Query 006015
Match_columns 664
No_of_seqs 414 out of 3987
Neff 11.2
Searched_HMMs 46136
Date Thu Mar 28 17:07:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006015.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006015hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.4E-39 2.9E-44 368.8 24.2 520 71-627 68-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.2E-39 9.2E-44 364.7 23.3 514 98-645 68-584 (968)
3 KOG4341 F-box protein containi 100.0 4.7E-30 1E-34 236.1 13.5 389 12-491 71-461 (483)
4 KOG4194 Membrane glycoprotein 99.9 3.2E-28 6.9E-33 232.8 -3.0 366 227-617 79-447 (873)
5 KOG4194 Membrane glycoprotein 99.9 8.1E-28 1.8E-32 230.1 -2.2 408 174-607 49-466 (873)
6 KOG4341 F-box protein containi 99.9 4.9E-25 1.1E-29 203.2 10.3 315 227-567 139-460 (483)
7 KOG2120 SCF ubiquitin ligase, 99.9 3E-24 6.5E-29 188.9 11.6 288 12-331 97-390 (419)
8 KOG0472 Leucine-rich repeat pr 99.9 7.9E-25 1.7E-29 200.4 -6.5 483 98-627 44-545 (565)
9 KOG0444 Cytoskeletal regulator 99.9 3.1E-24 6.8E-29 207.4 -7.0 369 124-546 6-375 (1255)
10 KOG0618 Serine/threonine phosp 99.9 2.7E-24 5.9E-29 217.4 -8.5 463 101-620 23-488 (1081)
11 KOG0444 Cytoskeletal regulator 99.8 1.3E-23 2.9E-28 203.1 -5.6 364 200-617 5-370 (1255)
12 KOG0618 Serine/threonine phosp 99.8 1.5E-23 3.2E-28 212.1 -7.4 463 127-643 23-487 (1081)
13 KOG0472 Leucine-rich repeat pr 99.8 1E-22 2.3E-27 186.6 -9.0 504 12-572 20-541 (565)
14 cd00116 LRR_RI Leucine-rich re 99.8 3.9E-17 8.4E-22 161.5 24.1 208 405-617 80-315 (319)
15 cd00116 LRR_RI Leucine-rich re 99.8 2.8E-17 6.1E-22 162.5 22.6 186 406-596 108-317 (319)
16 PLN03210 Resistant to P. syrin 99.8 3.4E-18 7.3E-23 194.1 13.3 313 203-547 590-907 (1153)
17 PLN03210 Resistant to P. syrin 99.7 1.6E-17 3.5E-22 188.7 12.4 336 199-570 555-904 (1153)
18 KOG2120 SCF ubiquitin ligase, 99.6 1.4E-14 3.1E-19 128.4 9.5 186 279-466 186-373 (419)
19 KOG4237 Extracellular matrix p 99.5 4.1E-16 8.9E-21 143.5 -2.3 290 126-441 68-357 (498)
20 KOG4237 Extracellular matrix p 99.5 2.7E-15 5.9E-20 138.2 0.8 271 380-660 67-375 (498)
21 PRK15387 E3 ubiquitin-protein 99.5 3.7E-14 8.1E-19 149.2 5.2 203 380-628 262-465 (788)
22 KOG1909 Ran GTPase-activating 99.4 4.2E-12 9E-17 115.9 14.8 256 296-571 23-310 (382)
23 KOG1909 Ran GTPase-activating 99.4 2.6E-12 5.7E-17 117.2 12.4 190 404-598 90-310 (382)
24 KOG3207 Beta-tubulin folding c 99.4 1.2E-13 2.5E-18 129.5 2.9 216 352-573 119-340 (505)
25 KOG1947 Leucine rich repeat pr 99.4 6E-12 1.3E-16 132.6 13.1 252 317-570 177-438 (482)
26 KOG1947 Leucine rich repeat pr 99.3 1.6E-11 3.4E-16 129.4 14.7 205 326-552 241-446 (482)
27 PRK15387 E3 ubiquitin-protein 99.3 3.8E-12 8.3E-17 134.3 8.7 32 484-517 424-455 (788)
28 PRK15370 E3 ubiquitin-protein 99.2 1.9E-11 4.1E-16 130.0 5.7 118 304-444 179-296 (754)
29 KOG3207 Beta-tubulin folding c 99.2 1.1E-11 2.5E-16 116.3 3.5 164 147-314 118-282 (505)
30 PRK15370 E3 ubiquitin-protein 99.0 5E-10 1.1E-14 119.3 9.1 75 176-263 178-252 (754)
31 KOG0617 Ras suppressor protein 99.0 2E-12 4.3E-17 105.3 -6.9 159 429-627 32-191 (264)
32 KOG0617 Ras suppressor protein 98.9 3.3E-12 7.1E-17 104.0 -9.1 156 404-573 31-187 (264)
33 KOG2982 Uncharacterized conser 98.9 1.4E-09 3E-14 97.2 4.8 162 225-391 44-210 (418)
34 PF14580 LRR_9: Leucine-rich r 98.8 8.2E-10 1.8E-14 94.9 1.2 13 605-617 136-148 (175)
35 PF14580 LRR_9: Leucine-rich r 98.8 1.6E-09 3.6E-14 93.0 1.4 103 406-517 19-123 (175)
36 KOG1259 Nischarin, modulator o 98.8 2E-09 4.4E-14 96.3 1.8 13 326-338 180-192 (490)
37 PF12937 F-box-like: F-box-lik 98.8 2.6E-09 5.6E-14 70.1 1.8 38 13-52 1-38 (47)
38 COG5238 RNA1 Ran GTPase-activa 98.8 1.8E-07 3.9E-12 82.9 12.9 197 400-601 87-318 (388)
39 COG5238 RNA1 Ran GTPase-activa 98.7 1.5E-07 3.3E-12 83.3 11.9 97 296-392 23-132 (388)
40 KOG3665 ZYG-1-like serine/thre 98.6 7.2E-08 1.6E-12 102.0 8.7 145 430-579 122-270 (699)
41 KOG1259 Nischarin, modulator o 98.6 1.3E-08 2.7E-13 91.3 2.3 139 481-634 283-424 (490)
42 KOG4658 Apoptotic ATPase [Sign 98.6 1.8E-08 3.9E-13 109.5 2.9 250 202-469 523-783 (889)
43 KOG3665 ZYG-1-like serine/thre 98.6 1.4E-07 3E-12 99.9 8.6 162 150-336 122-283 (699)
44 KOG4658 Apoptotic ATPase [Sign 98.5 6.9E-08 1.5E-12 105.0 3.5 130 175-310 544-675 (889)
45 PF00646 F-box: F-box domain; 98.5 3.9E-08 8.4E-13 65.2 0.7 40 12-53 2-41 (48)
46 KOG2982 Uncharacterized conser 98.4 3.8E-07 8.3E-12 82.0 5.1 213 303-520 45-262 (418)
47 KOG1859 Leucine-rich repeat pr 98.4 2E-08 4.3E-13 101.0 -3.8 129 431-573 165-293 (1096)
48 smart00256 FBOX A Receptor for 98.3 5.4E-07 1.2E-11 57.4 3.2 36 16-53 1-36 (41)
49 COG4886 Leucine-rich repeat (L 98.2 1.4E-06 3E-11 88.8 4.0 201 384-607 97-298 (394)
50 KOG1859 Leucine-rich repeat pr 98.1 2.8E-07 6.1E-12 93.0 -1.9 108 478-598 183-291 (1096)
51 KOG3864 Uncharacterized conser 98.0 3.9E-06 8.5E-11 71.5 3.5 85 407-492 102-186 (221)
52 COG4886 Leucine-rich repeat (L 98.0 3.5E-06 7.5E-11 85.8 3.2 154 407-576 141-294 (394)
53 PF13855 LRR_8: Leucine rich r 98.0 2.2E-06 4.7E-11 60.2 0.6 60 406-467 1-60 (61)
54 PF13855 LRR_8: Leucine rich r 97.9 3.4E-06 7.4E-11 59.2 1.4 60 176-237 1-60 (61)
55 KOG3864 Uncharacterized conser 97.9 8.7E-06 1.9E-10 69.4 3.2 89 431-521 102-190 (221)
56 PLN03150 hypothetical protein; 97.8 3.5E-05 7.5E-10 82.4 6.7 107 432-545 420-527 (623)
57 KOG0531 Protein phosphatase 1, 97.8 2.5E-06 5.4E-11 86.9 -2.4 175 404-601 93-270 (414)
58 PLN03150 hypothetical protein; 97.7 6.5E-05 1.4E-09 80.3 7.3 107 228-339 420-526 (623)
59 KOG0532 Leucine-rich repeat (L 97.6 2.2E-06 4.7E-11 84.4 -6.0 150 405-572 97-247 (722)
60 KOG4579 Leucine-rich repeat (L 97.5 3.8E-05 8.2E-10 61.1 1.5 92 528-626 48-140 (177)
61 KOG2739 Leucine-rich acidic nu 97.4 2E-05 4.3E-10 70.4 -1.7 86 481-570 42-127 (260)
62 KOG4308 LRR-containing protein 97.4 3.1E-05 6.7E-10 78.7 -0.9 189 382-576 89-307 (478)
63 KOG2123 Uncharacterized conser 97.3 4.1E-05 8.8E-10 68.7 -0.5 102 429-539 18-123 (388)
64 KOG0531 Protein phosphatase 1, 97.3 0.00011 2.4E-09 75.0 2.3 130 455-601 71-201 (414)
65 KOG0532 Leucine-rich repeat (L 97.3 7.9E-06 1.7E-10 80.6 -6.1 188 409-617 78-268 (722)
66 KOG1644 U2-associated snRNP A' 97.2 0.00017 3.7E-09 61.7 2.3 12 455-466 63-74 (233)
67 KOG4308 LRR-containing protein 97.2 0.00015 3.3E-09 73.8 2.3 316 280-621 89-445 (478)
68 KOG2739 Leucine-rich acidic nu 97.2 7.5E-05 1.6E-09 66.8 -0.4 85 531-617 63-151 (260)
69 PF12799 LRR_4: Leucine Rich r 97.1 0.00017 3.7E-09 46.0 0.7 37 534-573 2-38 (44)
70 KOG2123 Uncharacterized conser 97.1 0.0002 4.4E-09 64.4 1.0 102 176-284 19-123 (388)
71 KOG4579 Leucine-rich repeat (L 97.0 0.00043 9.2E-09 55.3 2.2 101 534-638 28-129 (177)
72 KOG1644 U2-associated snRNP A' 96.9 0.00095 2.1E-08 57.3 3.9 62 480-543 62-123 (233)
73 PF12799 LRR_4: Leucine Rich r 96.9 0.0016 3.4E-08 41.6 3.6 38 406-445 1-38 (44)
74 PRK15386 type III secretion pr 96.6 0.0026 5.6E-08 62.4 5.0 80 446-543 43-122 (426)
75 PRK15386 type III secretion pr 96.6 0.0038 8.3E-08 61.3 5.9 136 404-569 50-187 (426)
76 KOG0281 Beta-TrCP (transducin 96.1 0.0043 9.3E-08 57.3 2.9 42 9-52 71-116 (499)
77 PLN03215 ascorbic acid mannose 95.9 0.0059 1.3E-07 59.2 3.0 40 11-51 2-41 (373)
78 smart00367 LRR_CC Leucine-rich 95.8 0.013 2.8E-07 32.4 3.0 22 456-477 2-23 (26)
79 KOG2997 F-box protein FBX9 [Ge 95.7 0.0069 1.5E-07 55.7 2.5 44 9-52 103-149 (366)
80 smart00367 LRR_CC Leucine-rich 95.5 0.017 3.7E-07 31.9 2.7 23 532-554 1-23 (26)
81 PF13516 LRR_6: Leucine Rich r 94.6 0.023 4.9E-07 30.6 1.5 23 558-580 1-23 (24)
82 PF00560 LRR_1: Leucine Rich R 92.6 0.027 5.9E-07 29.5 -0.4 19 560-579 1-19 (22)
83 PF13306 LRR_5: Leucine rich r 92.4 0.02 4.3E-07 47.5 -1.7 119 480-612 10-129 (129)
84 PF13306 LRR_5: Leucine rich r 92.2 0.029 6.3E-07 46.5 -0.9 102 123-234 10-111 (129)
85 PF13013 F-box-like_2: F-box-l 91.7 0.25 5.3E-06 38.6 3.8 35 12-48 21-57 (109)
86 PF13516 LRR_6: Leucine Rich r 91.3 0.1 2.2E-06 28.0 0.9 21 430-451 2-22 (24)
87 PF13504 LRR_7: Leucine rich r 90.2 0.21 4.6E-06 24.2 1.4 15 559-573 1-15 (17)
88 smart00368 LRR_RI Leucine rich 89.3 0.41 8.9E-06 26.9 2.3 22 559-580 2-23 (28)
89 KOG3763 mRNA export factor TAP 86.7 0.94 2E-05 46.0 4.5 39 97-135 216-254 (585)
90 smart00368 LRR_RI Leucine rich 85.5 0.99 2.2E-05 25.3 2.4 18 432-450 4-21 (28)
91 KOG3763 mRNA export factor TAP 83.3 2.1 4.6E-05 43.6 5.2 39 454-492 216-254 (585)
92 smart00369 LRR_TYP Leucine-ric 82.5 0.45 9.7E-06 26.1 0.2 13 560-572 3-15 (26)
93 smart00370 LRR Leucine-rich re 82.5 0.45 9.7E-06 26.1 0.2 13 560-572 3-15 (26)
94 KOG0274 Cdc4 and related F-box 81.4 0.49 1.1E-05 49.5 0.2 46 9-56 104-149 (537)
95 smart00365 LRR_SD22 Leucine-ri 64.2 5.4 0.00012 21.9 1.5 15 559-573 2-16 (26)
96 PF09372 PRANC: PRANC domain; 58.7 6.7 0.00015 30.3 1.8 25 11-37 70-94 (97)
97 PF07723 LRR_2: Leucine Rich R 55.5 12 0.00026 20.5 1.9 25 152-176 2-26 (26)
98 KOG3926 F-box proteins [Amino 53.5 22 0.00047 32.7 4.3 40 10-50 199-238 (332)
99 KOG4242 Predicted myosin-I-bin 49.1 51 0.0011 33.4 6.3 146 426-575 296-456 (553)
100 KOG3735 Tropomodulin and leiom 41.0 48 0.001 31.9 4.7 81 370-451 188-275 (353)
101 smart00364 LRR_BAC Leucine-ric 36.7 10 0.00022 20.8 -0.2 12 590-601 6-17 (26)
102 KOG2502 Tub family proteins [G 26.0 41 0.00088 32.5 1.7 41 11-52 43-90 (355)
103 KOG0473 Leucine-rich repeat pr 25.3 2.7 5.8E-05 37.7 -5.7 84 531-621 40-124 (326)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.4e-39 Score=368.77 Aligned_cols=520 Identities=18% Similarity=0.141 Sum_probs=393.6
Q ss_pred CCCCcEeeccCCCCCChhHHHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcC
Q 006015 71 YSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAK 150 (664)
Q Consensus 71 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~ 150 (664)
..+++.|+++++ .+.......+. .+++|+.|++++|......+ ..++..+++|+.|++++|...+.. + ...++
T Consensus 68 ~~~v~~L~L~~~-~i~~~~~~~~~--~l~~L~~L~Ls~n~~~~~ip-~~~~~~l~~L~~L~Ls~n~l~~~~-p--~~~l~ 140 (968)
T PLN00113 68 SSRVVSIDLSGK-NISGKISSAIF--RLPYIQTINLSNNQLSGPIP-DDIFTTSSSLRYLNLSNNNFTGSI-P--RGSIP 140 (968)
T ss_pred CCcEEEEEecCC-CccccCChHHh--CCCCCCEEECCCCccCCcCC-hHHhccCCCCCEEECcCCcccccc-C--ccccC
Confidence 346888998864 34433333343 68899999999987543333 233447899999999988433322 1 24578
Q ss_pred CCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcce
Q 006015 151 NLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLED 230 (664)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~ 230 (664)
+|++|++++|. ++.. ++.....+++|++|++++|...+..+... .++++|++|++++|.+.+..|..++++++|+.
T Consensus 141 ~L~~L~Ls~n~-~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 141 NLETLDLSNNM-LSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSL--TNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCEEECcCCc-cccc-CChHHhcCCCCCEEECccCcccccCChhh--hhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 99999999987 4322 23334568999999999986555555443 48899999999999998888999999999999
Q ss_pred EeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEe
Q 006015 231 LILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKL 310 (664)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l 310 (664)
|++++|......+ ..++. +++|++|++++|..... ++..+..+++|+.|+++++ .+.+..+..+..+++|+.|++
T Consensus 217 L~L~~n~l~~~~p-~~l~~-l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L 291 (968)
T PLN00113 217 IYLGYNNLSGEIP-YEIGG-LTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQN-KLSGPIPPSIFSLQKLISLDL 291 (968)
T ss_pred EECcCCccCCcCC-hhHhc-CCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCC-eeeccCchhHhhccCcCEEEC
Confidence 9999987654333 34666 89999999998875433 5667788999999999988 677777888889999999999
Q ss_pred cCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCC
Q 006015 311 DGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESC 390 (664)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 390 (664)
++|.+....+..+. .+++|+.|++.+|.... ..+..+..+++|+.|++++|..... ++..+..+++|+.|++++|
T Consensus 292 s~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 292 SDNSLSGEIPELVI-QLQNLEILHLFSNNFTG--KIPVALTSLPRLQVLQLWSNKFSGE--IPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred cCCeeccCCChhHc-CCCCCcEEECCCCccCC--cCChhHhcCCCCCEEECcCCCCcCc--CChHHhCCCCCcEEECCCC
Confidence 99988877777776 78999999999886322 3455567889999999998874322 3445567899999999987
Q ss_pred CCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCC
Q 006015 391 TLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGIT 470 (664)
Q Consensus 391 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~ 470 (664)
... ......+. .+++|+.|++++|.+.+..+..+..+++|+.|++++| .++...+..+. .+++|+.|++++|. ++
T Consensus 367 ~l~-~~~p~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n-~l~~~~p~~~~-~l~~L~~L~Ls~N~-l~ 441 (968)
T PLN00113 367 NLT-GEIPEGLC-SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-SFSGELPSEFT-KLPLVYFLDISNNN-LQ 441 (968)
T ss_pred eeE-eeCChhHh-CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCC-EeeeECChhHh-cCCCCCEEECcCCc-cc
Confidence 652 22233344 6789999999999998888888999999999999999 88766555555 78999999999987 54
Q ss_pred hHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhh
Q 006015 471 DSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVG 550 (664)
Q Consensus 471 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 550 (664)
. .++..+..+++|+.|++++|. +.+..+..+ ..++|+.|++++| .++.. ++..+.++++|+.|++++|+. . +
T Consensus 442 ~-~~~~~~~~l~~L~~L~L~~n~-~~~~~p~~~-~~~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~--~ 513 (968)
T PLN00113 442 G-RINSRKWDMPSLQMLSLARNK-FFGGLPDSF-GSKRLENLDLSRN-QFSGA-VPRKLGSLSELMQLKLSENKL-S--G 513 (968)
T ss_pred C-ccChhhccCCCCcEEECcCce-eeeecCccc-ccccceEEECcCC-ccCCc-cChhhhhhhccCEEECcCCcc-e--e
Confidence 2 344445678999999999998 654444333 4588999999999 45442 566778899999999999953 2 2
Q ss_pred HHH-HHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHH-HHHHHHhCCcccceeee-hhhcccCChh
Q 006015 551 MLP-LAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNG-LAAALLACGGITKVKLQ-AAFKQLLPQP 627 (664)
Q Consensus 551 ~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~-~~~~~~~~~~L~~l~l~-n~~~~~~p~~ 627 (664)
..| ....+++|+.|++++|.+++..|..++. +++|+.+++++|.+.+ +|..+.++++|+.++++ |.+.+.+|..
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~---l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSE---MPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhC---cccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 222 2334799999999999999888877655 4556688899999985 56666679999999999 9999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.2e-39 Score=364.74 Aligned_cols=514 Identities=18% Similarity=0.143 Sum_probs=402.8
Q ss_pred cCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCC
Q 006015 98 SFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKN 177 (664)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (664)
..+++.|+++++...... ...+. .+++|+.|++++|...+......+..+++|++|++++|......+ ...+++
T Consensus 68 ~~~v~~L~L~~~~i~~~~-~~~~~-~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~ 141 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKI-SSAIF-RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP----RGSIPN 141 (968)
T ss_pred CCcEEEEEecCCCccccC-ChHHh-CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC----ccccCC
Confidence 357999999988643332 23333 899999999999844334444455589999999999997332211 134899
Q ss_pred cceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEE
Q 006015 178 LKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKAL 257 (664)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 257 (664)
|++|++++|...+..+... ..+++|++|++++|.+.+..|..++++++|++|++++|......+ ..+.. +++|+.|
T Consensus 142 L~~L~Ls~n~~~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~-l~~L~~L 217 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDI--GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIP-RELGQ-MKSLKWI 217 (968)
T ss_pred CCEEECcCCcccccCChHH--hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCC-hHHcC-cCCccEE
Confidence 9999999996555555443 589999999999999988899999999999999999987655433 35666 9999999
Q ss_pred eccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCC
Q 006015 258 DMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSK 337 (664)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (664)
++++|..... ++..+..+++|+.|+++++ .+.+..+..+.++++|+.|++++|.+.+..+..+. .+++|++|++++
T Consensus 218 ~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~ 293 (968)
T PLN00113 218 YLGYNNLSGE--IPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSD 293 (968)
T ss_pred ECcCCccCCc--CChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcC
Confidence 9999875433 5566788999999999998 77778888999999999999999998877777777 789999999998
Q ss_pred CCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCC
Q 006015 338 CDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNE 417 (664)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 417 (664)
|. +.. .++..+..+++|+.|++++|..... .+..+..+++|+.|++++|... ......+. .+++|+.|++++|.
T Consensus 294 n~-l~~-~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~-~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 294 NS-LSG-EIPELVIQLQNLEILHLFSNNFTGK--IPVALTSLPRLQVLQLWSNKFS-GEIPKNLG-KHNNLTVLDLSTNN 367 (968)
T ss_pred Ce-ecc-CCChhHcCCCCCcEEECCCCccCCc--CChhHhcCCCCCEEECcCCCCc-CcCChHHh-CCCCCcEEECCCCe
Confidence 86 322 3556678899999999999874332 3444567999999999997753 23333444 78999999999999
Q ss_pred CChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCH
Q 006015 418 IDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITD 497 (664)
Q Consensus 418 ~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 497 (664)
+.+..+..+..+++|+.|++++| .+....+..+. .+++|+.|++++|. ++. .++..+..+++|+.|++++|. +++
T Consensus 368 l~~~~p~~~~~~~~L~~L~l~~n-~l~~~~p~~~~-~~~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~Ls~N~-l~~ 442 (968)
T PLN00113 368 LTGEIPEGLCSSGNLFKLILFSN-SLEGEIPKSLG-ACRSLRRVRLQDNS-FSG-ELPSEFTKLPLVYFLDISNNN-LQG 442 (968)
T ss_pred eEeeCChhHhCcCCCCEEECcCC-EecccCCHHHh-CCCCCCEEECcCCE-eee-ECChhHhcCCCCCEEECcCCc-ccC
Confidence 98888888888999999999999 88776666666 79999999999998 542 345566789999999999998 887
Q ss_pred HHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHH-HHhcCcccCeeeeccCCCChhHH
Q 006015 498 SSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLP-LAHFSQNLRQINLSYTSVTDVGL 576 (664)
Q Consensus 498 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~ 576 (664)
.....+..+++|+.|++++|...+. ++..+ ..++|+.|++++|+. .. ..+ ....+++|+.|++++|.+.+..|
T Consensus 443 ~~~~~~~~l~~L~~L~L~~n~~~~~--~p~~~-~~~~L~~L~ls~n~l-~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 443 RINSRKWDMPSLQMLSLARNKFFGG--LPDSF-GSKRLENLDLSRNQF-SG--AVPRKLGSLSELMQLKLSENKLSGEIP 516 (968)
T ss_pred ccChhhccCCCCcEEECcCceeeee--cCccc-ccccceEEECcCCcc-CC--ccChhhhhhhccCEEECcCCcceeeCC
Confidence 7777778899999999999954322 44433 568999999999953 32 222 22347899999999999998888
Q ss_pred HHhhCCcccccceeeccCCCCHHHHHH-HHHhCCcccceeee-hhhcccCChhHHHHHHhcceEEEeeccc
Q 006015 577 LSLASISCLQNMTILHLKGLSLNGLAA-ALLACGGITKVKLQ-AAFKQLLPQPLIDHLQARGCVFQWRNKV 645 (664)
Q Consensus 577 ~~l~~~~~L~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~-n~~~~~~p~~~~~~~~~~~~~~~~~~~~ 645 (664)
..+.. +++|+.+++++|.+++..+ .+..+++|+.|+|+ |.+.+.+|..+.....+...+++.|...
T Consensus 517 ~~~~~---l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 517 DELSS---CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred hHHcC---ccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 77655 4556688999999987654 44559999999999 9999999998766656666676666554
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.97 E-value=4.7e-30 Score=236.05 Aligned_cols=389 Identities=22% Similarity=0.406 Sum_probs=267.9
Q ss_pred ccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhhccccccccccHHHHHhhCCCCcEeeccCC-CCCChhHH
Q 006015 12 LFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQEHLPAVLIRYSNTTHLDLSLY-PRINDHSL 90 (664)
Q Consensus 12 ~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~-~~~~~~~~ 90 (664)
.--.||+|++..||+ +|+ .+++.+++.+|+-|+..+.+..-+ +..|+... ..+....+
T Consensus 71 ~~~~LPpEl~lkvFS-~LD-tksl~r~a~~c~~~n~~AlD~~~~-------------------q~idL~t~~rDv~g~VV 129 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFS-MLD-TKSLCRAAQCCTMWNKLALDGSCW-------------------QHIDLFTFQRDVDGGVV 129 (483)
T ss_pred ccccCCHHHHHHHHH-HHh-HHHHHHHHHHHHHhhhhhhccccc-------------------eeeehhcchhcCCCcce
Confidence 344699999999999 999 999999999999999997754332 33333321 12233344
Q ss_pred HHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHh-cCCCcEEEccCccccChHHHH
Q 006015 91 FAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAE-AKNLEKLWMGRCKMVTDMGVG 169 (664)
Q Consensus 91 ~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~ 169 (664)
..+...+...|+.|.+++|.......+..+...||++++|++.+|..+++.....+.+ |++|++|.+..|..+++..+.
T Consensus 130 ~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 130 ENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred ehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 5566667788999999999988888999999899999999999998888877766665 688999999998888888888
Q ss_pred HHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHH
Q 006015 170 CIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKH 249 (664)
Q Consensus 170 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 249 (664)
.+...|++|+++++++|..+...++..+.+++..++.+...+| .......+..+..
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC------------------------~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC------------------------LELELEALLKAAA 265 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc------------------------ccccHHHHHHHhc
Confidence 8888899999999999887777666666666666665555443 3344444444444
Q ss_pred cCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCC
Q 006015 250 RCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVS 329 (664)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~ 329 (664)
.++.+.++++..|..+++..+..+-..+..|+.+..+++. .+++.....+++++.+
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t------------------------~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCT------------------------DITDEVLWALGQHCHN 321 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCC------------------------CCchHHHHHHhcCCCc
Confidence 4555555555555544444433333333333333333331 2234444555556777
Q ss_pred ccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCC
Q 006015 330 LKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLE 409 (664)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (664)
|+.|.+..|..+++.++...-.+++.|+.+++..|..+.+..+.....+++.|+.+.++.|..+++++...+...-
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~---- 397 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS---- 397 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc----
Confidence 7777777777666666666666677777777777766666656666666777777777766666666544333100
Q ss_pred EEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEec
Q 006015 410 ELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINI 489 (664)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 489 (664)
.....|..+.+++|+.+++..++.+. .|++|+.+++.+|..++..++..+..++|+++...+
T Consensus 398 -----------------c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 398 -----------------CSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred -----------------ccccccceeeecCCCCchHHHHHHHh-hCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 01345777778888777777777666 788888888888888888888888888888776655
Q ss_pred cC
Q 006015 490 AY 491 (664)
Q Consensus 490 ~~ 491 (664)
-.
T Consensus 460 ~a 461 (483)
T KOG4341|consen 460 FA 461 (483)
T ss_pred cc
Confidence 44
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=3.2e-28 Score=232.85 Aligned_cols=366 Identities=17% Similarity=0.173 Sum_probs=205.9
Q ss_pred CcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCcc
Q 006015 227 HLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQ 306 (664)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 306 (664)
.-+.|++++|. .....+..|.+ +++|+++.+..|.... +|.+.+...+|+.|++.+| .+.....+.+..++.|+
T Consensus 79 ~t~~LdlsnNk-l~~id~~~f~n-l~nLq~v~l~~N~Lt~---IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 79 QTQTLDLSNNK-LSHIDFEFFYN-LPNLQEVNLNKNELTR---IPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALR 152 (873)
T ss_pred ceeeeeccccc-cccCcHHHHhc-CCcceeeeeccchhhh---cccccccccceeEEeeecc-ccccccHHHHHhHhhhh
Confidence 44568888854 44444555666 8888888888876433 4555555566778887777 56655666677777777
Q ss_pred EEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEE
Q 006015 307 SIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLR 386 (664)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 386 (664)
.|+|+.|.++......+. .-.++++|+++++. +++.+. ..+..+.+|..|.++.|. ++... ...+.+++.|+.|+
T Consensus 153 slDLSrN~is~i~~~sfp-~~~ni~~L~La~N~-It~l~~-~~F~~lnsL~tlkLsrNr-ittLp-~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFP-AKVNIKKLNLASNR-ITTLET-GHFDSLNSLLTLKLSRNR-ITTLP-QRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhchhhcccCCCCC-CCCCceEEeecccc-cccccc-ccccccchheeeecccCc-ccccC-HHHhhhcchhhhhh
Confidence 777777766543332222 23567777777765 433222 123445566666676665 33322 23345566666666
Q ss_pred cCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCC
Q 006015 387 MESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRC 466 (664)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 466 (664)
+..|..--.++ .. ++.+++|+.|.+..|.+..-.-.+|-.+.++++|++..| ++....-..+. ++..|+.|++++|
T Consensus 228 LnrN~irive~-lt-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lf-gLt~L~~L~lS~N 303 (873)
T KOG4194|consen 228 LNRNRIRIVEG-LT-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLF-GLTSLEQLDLSYN 303 (873)
T ss_pred ccccceeeehh-hh-hcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhccccc-ccchhhhhccchh
Confidence 66654311111 11 225666666666666655544455555666666666666 55554333333 5666666666665
Q ss_pred CCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCcccc
Q 006015 467 VGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNI 546 (664)
Q Consensus 467 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i 546 (664)
. +.. .-....+.|++|++|+|++|. ++....+.+..+..|++|.|+.| .++.. -...|..+.+|++|++++|. +
T Consensus 304 a-I~r-ih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~Le~LnLs~N-si~~l-~e~af~~lssL~~LdLr~N~-l 377 (873)
T KOG4194|consen 304 A-IQR-IHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQLEELNLSHN-SIDHL-AEGAFVGLSSLHKLDLRSNE-L 377 (873)
T ss_pred h-hhe-eecchhhhcccceeEeccccc-cccCChhHHHHHHHhhhhccccc-chHHH-HhhHHHHhhhhhhhcCcCCe-E
Confidence 5 331 122334456666666666665 66666666666666666666666 44442 33445556666666666662 2
Q ss_pred C---hhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee
Q 006015 547 N---DVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ 617 (664)
Q Consensus 547 ~---~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~ 617 (664)
. +++..++. ++++|+.|++.+|++..+.-.+| ..|..|+.+++.+|.+..+.+..|.--.|++|.+.
T Consensus 378 s~~IEDaa~~f~-gl~~LrkL~l~gNqlk~I~krAf---sgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 378 SWCIEDAAVAFN-GLPSLRKLRLTGNQLKSIPKRAF---SGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred EEEEecchhhhc-cchhhhheeecCceeeecchhhh---ccCcccceecCCCCcceeecccccccchhhhhhhc
Confidence 1 01222222 25666666666666655443443 33444446666666666665555552266666555
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=8.1e-28 Score=230.08 Aligned_cols=408 Identities=18% Similarity=0.132 Sum_probs=302.4
Q ss_pred cCCCcce-EeccccCCcChhHHHHHHHcC-CcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcC
Q 006015 174 GCKNLKL-ISLKWCLGVGDLGVGLIAVKC-KEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRC 251 (664)
Q Consensus 174 ~~~~L~~-L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 251 (664)
.|+.... |+.++. .+....-..+.+.+ +.-+.|++++|.+....+..|.++++|+.+++..|..... + .++...
T Consensus 49 ~c~c~~~lldcs~~-~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~I-P--~f~~~s 124 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDR-ELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRI-P--RFGHES 124 (873)
T ss_pred cCCCCceeeecCcc-ccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhc-c--cccccc
Confidence 3665544 345544 34333222221122 3467899999999999999999999999999998654432 2 344436
Q ss_pred CCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCcc
Q 006015 252 KSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLK 331 (664)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 331 (664)
.+|+.|++.+|...+. -...+..++.|+.|+++.| .++......|..-.++++|+|++|.++......+. .+.+|.
T Consensus 125 ghl~~L~L~~N~I~sv--~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~ 200 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSV--TSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLL 200 (873)
T ss_pred cceeEEeeeccccccc--cHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccccccccccccc-ccchhe
Confidence 7799999999875443 2344667789999999998 55544445566667999999999999887777777 788999
Q ss_pred EEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCC--CCHHHHHHHHhhCCCCC
Q 006015 332 ELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTL--VPREAFVLIGQRCRFLE 409 (664)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~ 409 (664)
.|.++.+. ++.- -...++++++|+.|++..|.. .... ...+.++++|+.|.+..|.. +.+.. +. .+.+++
T Consensus 201 tlkLsrNr-ittL-p~r~Fk~L~~L~~LdLnrN~i-rive-~ltFqgL~Sl~nlklqrN~I~kL~DG~---Fy-~l~kme 272 (873)
T KOG4194|consen 201 TLKLSRNR-ITTL-PQRSFKRLPKLESLDLNRNRI-RIVE-GLTFQGLPSLQNLKLQRNDISKLDDGA---FY-GLEKME 272 (873)
T ss_pred eeecccCc-cccc-CHHHhhhcchhhhhhccccce-eeeh-hhhhcCchhhhhhhhhhcCcccccCcc---ee-eecccc
Confidence 99999987 4422 234567899999999988762 2221 22356799999999998765 22222 22 789999
Q ss_pred EEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEec
Q 006015 410 ELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINI 489 (664)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 489 (664)
+|++..|++....-.++.++..|+.|++++| .|....+..+. .++.|++|+++.|. ++. --+..+..+..|++|+|
T Consensus 273 ~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~Ws-ftqkL~~LdLs~N~-i~~-l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 273 HLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWS-FTQKLKELDLSSNR-ITR-LDEGSFRVLSQLEELNL 348 (873)
T ss_pred eeecccchhhhhhcccccccchhhhhccchh-hhheeecchhh-hcccceeEeccccc-ccc-CChhHHHHHHHhhhhcc
Confidence 9999999998888888889999999999999 99887777776 78999999999987 652 22333445688999999
Q ss_pred cCCCCCCHHHHHhhhcCCCCCEEEccCCCC---CCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeee
Q 006015 490 AYLKDITDSSLLSLSKCSRLNTFESRGCPL---ITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINL 566 (664)
Q Consensus 490 ~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~---l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l 566 (664)
++|. ++......|..+++|+.|+|++|.. +.+ -...+.+++.|++|++.|| ++..+....+. ++++|++|||
T Consensus 349 s~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IED--aa~~f~gl~~LrkL~l~gN-qlk~I~krAfs-gl~~LE~LdL 423 (873)
T KOG4194|consen 349 SHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIED--AAVAFNGLPSLRKLRLTGN-QLKSIPKRAFS-GLEALEHLDL 423 (873)
T ss_pred cccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEec--chhhhccchhhhheeecCc-eeeecchhhhc-cCcccceecC
Confidence 9998 9988888899999999999999831 223 3456778999999999999 55555444443 4899999999
Q ss_pred ccCCCChhHHHHhhCCcccccceeec---cCCCCHHHHHHHHHh
Q 006015 567 SYTSVTDVGLLSLASISCLQNMTILH---LKGLSLNGLAAALLA 607 (664)
Q Consensus 567 ~~n~l~~~~~~~l~~~~~L~~L~~l~---l~~n~~~~~~~~~~~ 607 (664)
.+|.|..+.+.+|..+ .|++|.+-. +-.+++.-++.-+..
T Consensus 424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~ 466 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYR 466 (873)
T ss_pred CCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHh
Confidence 9999999999888776 666554322 224566666665544
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.92 E-value=4.9e-25 Score=203.19 Aligned_cols=315 Identities=26% Similarity=0.493 Sum_probs=255.7
Q ss_pred CcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCcc
Q 006015 227 HLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQ 306 (664)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 306 (664)
.|+.|++.++..+.+.+...+...||++++|.+.+|..+++..+..+-. .+++|+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~-------------------------~C~~l~ 193 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR-------------------------YCRKLR 193 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHH-------------------------hcchhh
Confidence 4555556665555555555555555555555555555444433333333 345666
Q ss_pred EEEecCC-ccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEE
Q 006015 307 SIKLDGS-VVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSL 385 (664)
Q Consensus 307 ~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (664)
+|++..| .+++...+.+++.|++|+++.++.|+.+...++......+..++++...+|...+...+......++.+..+
T Consensus 194 ~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~l 273 (483)
T KOG4341|consen 194 HLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKL 273 (483)
T ss_pred hhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhcc
Confidence 6666663 566777777888999999999999998888888888889999999988899988888888888888889999
Q ss_pred EcCCCCCCCHHHHHHHHhhCCCCCEEEccCC-CCChhhHHhhcc-CCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEc
Q 006015 386 RMESCTLVPREAFVLIGQRCRFLEELDLTDN-EIDDEGLKSISR-CSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDL 463 (664)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l 463 (664)
++..|..+++.....+...+..|+.+..+++ .+++....+++. +++|+.|.+.+|.++++.++..+..+++.|+.+++
T Consensus 274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 9999999999998888888999999999885 677777777765 89999999999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhc----CCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEe
Q 006015 464 YRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSK----CSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLD 539 (664)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 539 (664)
.+|..+++..+.....+|+.|+.+.+++|..+++.....+.. ...|+.+++++|+.+++. .-+.+..|++|++++
T Consensus 354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~-~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA-TLEHLSICRNLERIE 432 (483)
T ss_pred cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH-HHHHHhhCcccceee
Confidence 999988887788888999999999999999899987777764 568999999999999886 556677899999999
Q ss_pred ccCccccChhhHHHHHhcCcccCeeeec
Q 006015 540 IKWCHNINDVGMLPLAHFSQNLRQINLS 567 (664)
Q Consensus 540 l~~~~~i~~~~~~~~~~~~~~L~~L~l~ 567 (664)
+.+|+.++..++.++..++|+++...+.
T Consensus 433 l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 433 LIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred eechhhhhhhhhHHHHhhCccceehhhc
Confidence 9999999999999998889988876543
No 7
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3e-24 Score=188.86 Aligned_cols=288 Identities=22% Similarity=0.277 Sum_probs=190.2
Q ss_pred ccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhhccccc------cccccHHHHHhhCCCCcEeeccCCCCC
Q 006015 12 LFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKP------LRQEHLPAVLIRYSNTTHLDLSLYPRI 85 (664)
Q Consensus 12 ~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~L~l~~~~~~ 85 (664)
.|+.||||++..||+ .|+ .+++.+++.|||||+++..+.+.|.+. ++.+.+.+.+.+ .+..+.+-. ..+
T Consensus 97 ~~~slpDEill~IFs-~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar-~~~ 171 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFS-CLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLAR-SFM 171 (419)
T ss_pred CcccCCHHHHHHHHH-hcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcch-hhh
Confidence 589999999999999 999 999999999999999998876655432 222222222222 122222221 111
Q ss_pred ChhHHHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccCh
Q 006015 86 NDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTD 165 (664)
Q Consensus 86 ~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 165 (664)
.+..+.+...-.-.+|++++|+... ++...+..+...|.+|+.|.+.+. .+.+.....+++-.+|+.|+++.|.+++.
T Consensus 172 ~~prlae~~~~frsRlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~ 249 (419)
T KOG2120|consen 172 DQPRLAEHFSPFRSRLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTE 249 (419)
T ss_pred cCchhhhhhhhhhhhhHHhhcchhh-eeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccch
Confidence 2222333332234568888888764 556666667778888888888887 67777777888888888888888888888
Q ss_pred HHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHH
Q 006015 166 MGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLA 245 (664)
Q Consensus 166 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 245 (664)
.++.-+..+|..|..|++++|....+.-...++.--++|+.|+++++. .......+.
T Consensus 250 n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r-----------------------rnl~~sh~~ 306 (419)
T KOG2120|consen 250 NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR-----------------------RNLQKSHLS 306 (419)
T ss_pred hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH-----------------------hhhhhhHHH
Confidence 888888888888888888888655555333333334556666655542 112222444
Q ss_pred HHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHh
Q 006015 246 ALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGD 325 (664)
Q Consensus 246 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~ 325 (664)
.+..+||+|.+||+++|...+. +....+..++.|++|.++.|+.+.....-.+...|.|.+|++.|+- ++...+.+.+
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v-sdt~mel~~e 384 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV-SDTTMELLKE 384 (419)
T ss_pred HHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc-CchHHHHHHH
Confidence 5666688888888888776666 4455566777788888877766655555566677778888877763 3333444444
Q ss_pred cCCCcc
Q 006015 326 WCVSLK 331 (664)
Q Consensus 326 ~~~~L~ 331 (664)
.+++|+
T Consensus 385 ~~~~lk 390 (419)
T KOG2120|consen 385 MLSHLK 390 (419)
T ss_pred hCcccc
Confidence 555554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=7.9e-25 Score=200.40 Aligned_cols=483 Identities=17% Similarity=0.151 Sum_probs=300.3
Q ss_pred cCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCC
Q 006015 98 SFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKN 177 (664)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (664)
...+..+.+++|....... .+ +.++.++.|++.++. .. ..++++.++..++.+++++++ +... +.-..+.++
T Consensus 44 qv~l~~lils~N~l~~l~~--dl-~nL~~l~vl~~~~n~-l~-~lp~aig~l~~l~~l~vs~n~-ls~l--p~~i~s~~~ 115 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEVLRE--DL-KNLACLTVLNVHDNK-LS-QLPAAIGELEALKSLNVSHNK-LSEL--PEQIGSLIS 115 (565)
T ss_pred hcchhhhhhccCchhhccH--hh-hcccceeEEEeccch-hh-hCCHHHHHHHHHHHhhcccch-Hhhc--cHHHhhhhh
Confidence 3447777777775322111 11 266778888888763 32 245677888888888888876 3322 333334778
Q ss_pred cceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEE
Q 006015 178 LKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKAL 257 (664)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 257 (664)
|..++++++ .....+.+. ..+..++.++..+|++. ..|+.++.+.+|..+.+.++..... +...+ . ++.|+++
T Consensus 116 l~~l~~s~n-~~~el~~~i--~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i-~-m~~L~~l 188 (565)
T KOG0472|consen 116 LVKLDCSSN-ELKELPDSI--GRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHI-A-MKRLKHL 188 (565)
T ss_pred hhhhhcccc-ceeecCchH--HHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHH-H-HHHHHhc
Confidence 888888877 344444444 36777888888888776 5677777888888888887654332 22222 2 6778888
Q ss_pred eccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCC
Q 006015 258 DMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSK 337 (664)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (664)
+...|.... ++.-++++.+|+.|++..+ .+. ..| .|..+..|+++.++.|.+.. .++...+.++++..|++.+
T Consensus 189 d~~~N~L~t---lP~~lg~l~~L~~LyL~~N-ki~-~lP-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRd 261 (565)
T KOG0472|consen 189 DCNSNLLET---LPPELGGLESLELLYLRRN-KIR-FLP-EFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRD 261 (565)
T ss_pred ccchhhhhc---CChhhcchhhhHHHHhhhc-ccc-cCC-CCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccc
Confidence 877665333 5566677777888888777 332 233 67777788888888777643 4455555778888888887
Q ss_pred CCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCC--H----HHHHHHHhhCCC-CCE
Q 006015 338 CDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVP--R----EAFVLIGQRCRF-LEE 410 (664)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~----~~~~~~~~~~~~-L~~ 410 (664)
++ +. .++..+..+++|+.|++++|. ++. ++..++++ +|+.|.+.||..-+ . .+-..+.+.+.+ .+.
T Consensus 262 Nk-lk--e~Pde~clLrsL~rLDlSNN~-is~--Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~ 334 (565)
T KOG0472|consen 262 NK-LK--EVPDEICLLRSLERLDLSNND-ISS--LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKD 334 (565)
T ss_pred cc-cc--cCchHHHHhhhhhhhcccCCc-ccc--CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhcc
Confidence 75 43 455555667788888888776 333 33334555 77777777766511 0 011111111111 000
Q ss_pred EEccCC---CCC-----hhhHHhhccCCCccEEcccCCCCCChHhHHHHhh-CCCCCcEEEcCCCCCCChHHHHHHHhcC
Q 006015 411 LDLTDN---EID-----DEGLKSISRCSKLSVLKLGICLNITGEGLAHVGM-CCSKLKELDLYRCVGITDSGILTIACGC 481 (664)
Q Consensus 411 L~l~~~---~~~-----~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 481 (664)
=.++.. ..+ ...........+.+.|++++- ++++...+.|.. .-.-....++++|. +. .++.-+..+
T Consensus 335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNq-L~--elPk~L~~l 410 (565)
T KOG0472|consen 335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQ-LC--ELPKRLVEL 410 (565)
T ss_pred CCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccch-Hh--hhhhhhHHH
Confidence 011111 000 001111122456777877776 666543332221 12336778888876 32 333333333
Q ss_pred CC-CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhc-Cc
Q 006015 482 PD-LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHF-SQ 559 (664)
Q Consensus 482 ~~-L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~-~~ 559 (664)
.. .+.+.++++ .-+..+..+..+++|..|++++| .+.+ +|..+..+-.|+.|+++.|. ....|-+-+ +.
T Consensus 411 kelvT~l~lsnn--~isfv~~~l~~l~kLt~L~L~NN-~Ln~--LP~e~~~lv~Lq~LnlS~Nr----Fr~lP~~~y~lq 481 (565)
T KOG0472|consen 411 KELVTDLVLSNN--KISFVPLELSQLQKLTFLDLSNN-LLND--LPEEMGSLVRLQTLNLSFNR----FRMLPECLYELQ 481 (565)
T ss_pred HHHHHHHHhhcC--ccccchHHHHhhhcceeeecccc-hhhh--cchhhhhhhhhheecccccc----cccchHHHhhHH
Confidence 32 334555554 34566677888999999999999 5655 67777788889999999995 344554443 34
Q ss_pred ccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee-hhhcccCChh
Q 006015 560 NLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQLLPQP 627 (664)
Q Consensus 560 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~ 627 (664)
.++.+-.++|++....+..+ .++++|..+++.+|.+..+|+.+.+|.+|++|++. |+|. .|..
T Consensus 482 ~lEtllas~nqi~~vd~~~l---~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 482 TLETLLASNNQIGSVDPSGL---KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred HHHHHHhccccccccChHHh---hhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC--CCHH
Confidence 55556666688888776654 55566669999999999999999999999999999 8888 4544
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=3.1e-24 Score=207.38 Aligned_cols=369 Identities=18% Similarity=0.111 Sum_probs=198.2
Q ss_pred CCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCc
Q 006015 124 CKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKE 203 (664)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (664)
+|-++-+|+++|...++..+.....+++++-|.|.... +.. ++.-...|.+|++|.+..|..+.- .-+. ..+|.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~-L~~--vPeEL~~lqkLEHLs~~HN~L~~v-hGEL--s~Lp~ 79 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK-LEQ--VPEELSRLQKLEHLSMAHNQLISV-HGEL--SDLPR 79 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhh-hhh--ChHHHHHHhhhhhhhhhhhhhHhh-hhhh--ccchh
Confidence 45666777777755555566666677777777776643 222 233333466666666666532222 2121 25566
Q ss_pred CcEEeccCCCCCC-chhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcE
Q 006015 204 IRSLDLSYLPITN-KCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQ 282 (664)
Q Consensus 204 L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (664)
|+.+.+..|++.+ -+|..+.++..|..|+++.|..... +..+.. -.++-.|++++|...+
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev--P~~LE~-AKn~iVLNLS~N~Iet---------------- 140 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV--PTNLEY-AKNSIVLNLSYNNIET---------------- 140 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhhhc--chhhhh-hcCcEEEEcccCcccc----------------
Confidence 6666666664443 2344555555555555555432211 111222 3444445555444322
Q ss_pred eecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecC
Q 006015 283 LTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDIT 362 (664)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (664)
.....+.++..|-.|++++|.+... +..+. .+..|++|.+++++ +....+. -+..+.+|+.|+++
T Consensus 141 -----------IPn~lfinLtDLLfLDLS~NrLe~L-PPQ~R-RL~~LqtL~Ls~NP-L~hfQLr-QLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 141 -----------IPNSLFINLTDLLFLDLSNNRLEML-PPQIR-RLSMLQTLKLSNNP-LNHFQLR-QLPSMTSLSVLHMS 205 (1255)
T ss_pred -----------CCchHHHhhHhHhhhccccchhhhc-CHHHH-HHhhhhhhhcCCCh-hhHHHHh-cCccchhhhhhhcc
Confidence 2222333444444455555544222 22222 34455555555544 1100110 11223334444444
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCC
Q 006015 363 CCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLN 442 (664)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 442 (664)
+.. -+-..++..+..+.+|..++++.|+. ...+..+. ++++|+.|++++|+++... ...+...+|+.|+++.| +
T Consensus 206 ~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~L--p~vPecly-~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrN-Q 279 (1255)
T KOG0444|consen 206 NTQ-RTLDNIPTSLDDLHNLRDVDLSENNL--PIVPECLY-KLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRN-Q 279 (1255)
T ss_pred ccc-chhhcCCCchhhhhhhhhccccccCC--CcchHHHh-hhhhhheeccCcCceeeee-ccHHHHhhhhhhccccc-h
Confidence 432 12222333344556666666666554 22334444 6667777777777665521 22334567777777777 6
Q ss_pred CChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCH
Q 006015 443 ITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITS 522 (664)
Q Consensus 443 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~ 522 (664)
++.. +..++ .++.|+.|.+..|+ ++-+++++-+..+.+|+.+...+|. + +..++.+.+|++|+.|.|+.|..++
T Consensus 280 Lt~L-P~avc-KL~kL~kLy~n~Nk-L~FeGiPSGIGKL~~Levf~aanN~-L-ElVPEglcRC~kL~kL~L~~NrLiT- 353 (1255)
T KOG0444|consen 280 LTVL-PDAVC-KLTKLTKLYANNNK-LTFEGIPSGIGKLIQLEVFHAANNK-L-ELVPEGLCRCVKLQKLKLDHNRLIT- 353 (1255)
T ss_pred hccc-hHHHh-hhHHHHHHHhccCc-ccccCCccchhhhhhhHHHHhhccc-c-ccCchhhhhhHHHHHhcccccceee-
Confidence 6652 44555 67777777777666 6666777777777777777777764 3 4566777778888888887775443
Q ss_pred HHHHHHHhcCCcCcEEeccCcccc
Q 006015 523 LGLAAIAVGCKQLIKLDIKWCHNI 546 (664)
Q Consensus 523 ~~~~~~~~~~~~L~~L~l~~~~~i 546 (664)
+|+.+.-++.|+.|+++.|+.+
T Consensus 354 --LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 354 --LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred --chhhhhhcCCcceeeccCCcCc
Confidence 5666667777888888877653
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=2.7e-24 Score=217.38 Aligned_cols=463 Identities=18% Similarity=0.149 Sum_probs=280.7
Q ss_pred cceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcce
Q 006015 101 LQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKL 180 (664)
Q Consensus 101 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 180 (664)
+.+|+++.|.....+ +. +.+++-+|++|+++++ .+.+ .+..+..+.+|+.|.++.|. +...+ .-..+..+|++
T Consensus 23 ~~~ln~~~N~~l~~p-l~-~~~~~v~L~~l~lsnn-~~~~-fp~~it~l~~L~~ln~s~n~-i~~vp--~s~~~~~~l~~ 95 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRP-LE-FVEKRVKLKSLDLSNN-QISS-FPIQITLLSHLRQLNLSRNY-IRSVP--SSCSNMRNLQY 95 (1081)
T ss_pred HHhhhccccccccCc-hH-HhhheeeeEEeecccc-cccc-CCchhhhHHHHhhcccchhh-HhhCc--hhhhhhhcchh
Confidence 777778777654433 33 3335555888888876 3443 24466677778888887765 33322 22233677777
Q ss_pred EeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEecc
Q 006015 181 ISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMS 260 (664)
Q Consensus 181 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 260 (664)
+.|.++ .....|... ..+.+|+.|++++|.+. ..|..+..+..+..+..++|..+ ..++. ..++.+++.
T Consensus 96 lnL~~n-~l~~lP~~~--~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~-----~~lg~--~~ik~~~l~ 164 (1081)
T KOG0618|consen 96 LNLKNN-RLQSLPASI--SELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI-----QRLGQ--TSIKKLDLR 164 (1081)
T ss_pred heeccc-hhhcCchhH--HhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh-----hhhcc--ccchhhhhh
Confidence 777766 455555444 35677777777777655 45555556666666666655111 11222 125555555
Q ss_pred CCCCcChhhHHHHHhccCCCcE-eecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCC
Q 006015 261 SCQNISHLGLSSLTSSIGGLQQ-LTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCD 339 (664)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~L~~-L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (664)
.+..... +. .....+++ |+++++ .+. ...+..+.+|+.|....+.+..... ..++|+.|+...|+
T Consensus 165 ~n~l~~~--~~---~~i~~l~~~ldLr~N-~~~---~~dls~~~~l~~l~c~rn~ls~l~~-----~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 165 LNVLGGS--FL---IDIYNLTHQLDLRYN-EME---VLDLSNLANLEVLHCERNQLSELEI-----SGPSLTALYADHNP 230 (1081)
T ss_pred hhhcccc--hh---cchhhhheeeecccc-hhh---hhhhhhccchhhhhhhhcccceEEe-----cCcchheeeeccCc
Confidence 4443221 11 11223333 666666 222 2334556666666666665533211 34677777777776
Q ss_pred CCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCC
Q 006015 340 GVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEID 419 (664)
Q Consensus 340 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (664)
..+ ... ...-.+|+.++++.+.. .. ++.+...+.+|+.+.+..|.. ...+..+. ...+|+.|.+..|.+.
T Consensus 231 l~~--~~~--~p~p~nl~~~dis~n~l-~~--lp~wi~~~~nle~l~~n~N~l--~~lp~ri~-~~~~L~~l~~~~nel~ 300 (1081)
T KOG0618|consen 231 LTT--LDV--HPVPLNLQYLDISHNNL-SN--LPEWIGACANLEALNANHNRL--VALPLRIS-RITSLVSLSAAYNELE 300 (1081)
T ss_pred cee--ecc--ccccccceeeecchhhh-hc--chHHHHhcccceEecccchhH--HhhHHHHh-hhhhHHHHHhhhhhhh
Confidence 221 111 11235677888877653 22 346667788888888877665 33444444 5677777777777665
Q ss_pred hhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHH
Q 006015 420 DEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSS 499 (664)
Q Consensus 420 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 499 (664)
. .+..+...+.|++|++..| ++.+.....+......|+.|..+.++ +..-. ..--...+.|+.|.+.+|. +++..
T Consensus 301 y-ip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp-~~~e~~~~~Lq~LylanN~-Ltd~c 375 (1081)
T KOG0618|consen 301 Y-IPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNK-LSTLP-SYEENNHAALQELYLANNH-LTDSC 375 (1081)
T ss_pred h-CCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhcc-ccccc-cccchhhHHHHHHHHhcCc-ccccc
Confidence 5 3445556778888888888 77664332222112235556555544 22100 1111124678889999998 99999
Q ss_pred HHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHh
Q 006015 500 LLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSL 579 (664)
Q Consensus 500 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 579 (664)
+..+..+++|+.|+|++| .++.. ....+.++..|+.|+++||. ++... .....++.|+.|...+|.+.. .|
T Consensus 376 ~p~l~~~~hLKVLhLsyN-rL~~f-pas~~~kle~LeeL~LSGNk-L~~Lp--~tva~~~~L~tL~ahsN~l~~-fP--- 446 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYN-RLNSF-PASKLRKLEELEELNLSGNK-LTTLP--DTVANLGRLHTLRAHSNQLLS-FP--- 446 (1081)
T ss_pred hhhhccccceeeeeeccc-ccccC-CHHHHhchHHhHHHhcccch-hhhhh--HHHHhhhhhHHHhhcCCceee-ch---
Confidence 999999999999999999 56543 44567789999999999994 33222 222347899999999998765 44
Q ss_pred hCCcccccceeeccCCCCHHHHHHHHH-hCCcccceeee-hhh
Q 006015 580 ASISCLQNMTILHLKGLSLNGLAAALL-ACGGITKVKLQ-AAF 620 (664)
Q Consensus 580 ~~~~~L~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l~-n~~ 620 (664)
.+.++..|+++|++.|.++.+.-..- ..|+|+.||++ |.-
T Consensus 447 -e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 -ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 35556677799999999886532222 24899999999 653
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.3e-23 Score=203.11 Aligned_cols=364 Identities=16% Similarity=0.108 Sum_probs=192.3
Q ss_pred cCCcCcEEeccCCCCC-CchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccC
Q 006015 200 KCKEIRSLDLSYLPIT-NKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIG 278 (664)
Q Consensus 200 ~~~~L~~L~l~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (664)
-+|-.+-.++++|.++ +..|.....++.++-|.+....... .++.++. +.+|++|.+++|...+ +...+..++
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~--vPeEL~~-lqkLEHLs~~HN~L~~---vhGELs~Lp 78 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQ--VPEELSR-LQKLEHLSMAHNQLIS---VHGELSDLP 78 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhh--ChHHHHH-HhhhhhhhhhhhhhHh---hhhhhccch
Confidence 3466777888888777 4566677778888888887643322 2345666 8888888888776544 344456667
Q ss_pred CCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccE
Q 006015 279 GLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRK 358 (664)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 358 (664)
.|+.+.+..+.--...+|..+..+..|+.|+++.|++.. .+..+. ..+++-.|+++++. +... -...+.++..|-.
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE-~AKn~iVLNLS~N~-IetI-Pn~lfinLtDLLf 154 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLE-YAKNSIVLNLSYNN-IETI-PNSLFINLTDLLF 154 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhh-hhcCcEEEEcccCc-cccC-CchHHHhhHhHhh
Confidence 777777777633344566667777777777777776632 344444 45677777777765 2211 1122345556666
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCC-ChhhHHhhccCCCccEEcc
Q 006015 359 LDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEI-DDEGLKSISRCSKLSVLKL 437 (664)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l 437 (664)
|++++|.. . .++.-.+.+.+|++|.+++|... -..+..+. .+++|+.|.+++++- .+..|..+..+.+|+.+++
T Consensus 155 LDLS~NrL-e--~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 155 LDLSNNRL-E--MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hccccchh-h--hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 67766552 1 13333455666666666665541 22222232 445555555655422 2233444445555555555
Q ss_pred cCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCC
Q 006015 438 GICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGC 517 (664)
Q Consensus 438 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (664)
+.| ++... ++.+. ++++|+.|++++|. ++. +.. ....+.+|++|+++.|
T Consensus 230 S~N-~Lp~v-Pecly-~l~~LrrLNLS~N~-ite--L~~-------------------------~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 230 SEN-NLPIV-PECLY-KLRNLRRLNLSGNK-ITE--LNM-------------------------TEGEWENLETLNLSRN 278 (1255)
T ss_pred ccc-CCCcc-hHHHh-hhhhhheeccCcCc-eee--eec-------------------------cHHHHhhhhhhccccc
Confidence 555 44431 23333 45555555555554 331 111 1122334444444444
Q ss_pred CCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCC
Q 006015 518 PLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLS 597 (664)
Q Consensus 518 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~ 597 (664)
+++. +|+.+..++.|++|.+.+| .++-.|+....+.+.+|+.+...+|.+. ..|+.++.|..|+ -+.++.|+
T Consensus 279 -QLt~--LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~---kL~L~~Nr 350 (1255)
T KOG0444|consen 279 -QLTV--LPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ---KLKLDHNR 350 (1255)
T ss_pred -hhcc--chHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH---Hhcccccc
Confidence 3333 4444444455555555444 3344444333333444454444444432 2344444444333 23344555
Q ss_pred HHHHHHHHHhCCcccceeee
Q 006015 598 LNGLAAALLACGGITKVKLQ 617 (664)
Q Consensus 598 ~~~~~~~~~~~~~L~~l~l~ 617 (664)
+..+|+.+--++.|+.||++
T Consensus 351 LiTLPeaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 351 LITLPEAIHLLPDLKVLDLR 370 (1255)
T ss_pred eeechhhhhhcCCcceeecc
Confidence 55555544445555555555
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-23 Score=212.09 Aligned_cols=463 Identities=14% Similarity=0.089 Sum_probs=303.4
Q ss_pred CcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcE
Q 006015 127 LKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRS 206 (664)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 206 (664)
+..|+++.|..+. .+.+.+.+..+|+.|++++|. +.+.+ .-...+++|+.|+++.| .+...+... .++.+|++
T Consensus 23 ~~~ln~~~N~~l~-~pl~~~~~~v~L~~l~lsnn~-~~~fp--~~it~l~~L~~ln~s~n-~i~~vp~s~--~~~~~l~~ 95 (1081)
T KOG0618|consen 23 LQILNLRRNSLLS-RPLEFVEKRVKLKSLDLSNNQ-ISSFP--IQITLLSHLRQLNLSRN-YIRSVPSSC--SNMRNLQY 95 (1081)
T ss_pred HHhhhcccccccc-CchHHhhheeeeEEeeccccc-cccCC--chhhhHHHHhhcccchh-hHhhCchhh--hhhhcchh
Confidence 7778888774333 235555556668888888876 44433 22233678888888877 555555443 36778888
Q ss_pred EeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecC
Q 006015 207 LDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLA 286 (664)
Q Consensus 207 L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 286 (664)
+.+.+|.+. ..|..+..+++|+.|++++|.+...... +.. +..+..+..++|..+.. ++. ..++.+++.
T Consensus 96 lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~--i~~-lt~~~~~~~s~N~~~~~------lg~-~~ik~~~l~ 164 (1081)
T KOG0618|consen 96 LNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLV--IEV-LTAEEELAASNNEKIQR------LGQ-TSIKKLDLR 164 (1081)
T ss_pred heeccchhh-cCchhHHhhhcccccccchhccCCCchh--HHh-hhHHHHHhhhcchhhhh------hcc-ccchhhhhh
Confidence 888877655 5677788888888888888766553322 333 56666777776632221 111 126677776
Q ss_pred CCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCC
Q 006015 287 HGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRK 366 (664)
Q Consensus 287 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 366 (664)
.+ .+.+.++..+..+.. .|++..|.+.. ..+. .+++|+.+....+... .+...-++|+.|+.+.|..
T Consensus 165 ~n-~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls-~~~~l~~l~c~rn~ls------~l~~~g~~l~~L~a~~n~l 231 (1081)
T KOG0618|consen 165 LN-VLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLS-NLANLEVLHCERNQLS------ELEISGPSLTALYADHNPL 231 (1081)
T ss_pred hh-hcccchhcchhhhhe--eeecccchhhh---hhhh-hccchhhhhhhhcccc------eEEecCcchheeeeccCcc
Confidence 66 555566666665555 68888887752 1222 5677888877765421 1122457888888888874
Q ss_pred CChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChH
Q 006015 367 ISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGE 446 (664)
Q Consensus 367 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 446 (664)
.+. .....-.+|+.++++.+... .++.+...|.+|+.++..+|.+ ...+..+....+|+.|.+.+| .+..
T Consensus 232 ~~~----~~~p~p~nl~~~dis~n~l~---~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~y- 301 (1081)
T KOG0618|consen 232 TTL----DVHPVPLNLQYLDISHNNLS---NLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEY- 301 (1081)
T ss_pred eee----ccccccccceeeecchhhhh---cchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhh-
Confidence 311 11123458899999987663 2224444899999999999888 446677777888999998888 6655
Q ss_pred hHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcC-CCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHH
Q 006015 447 GLAHVGMCCSKLKELDLYRCVGITDSGILTIACGC-PDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGL 525 (664)
Q Consensus 447 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~ 525 (664)
+..+...+..|+.|++..|. +.. .....+... .+|+.|+.+.++ +....-..=..++.|+.|.+.+| .+++..+
T Consensus 302 -ip~~le~~~sL~tLdL~~N~-L~~-lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~ 376 (1081)
T KOG0618|consen 302 -IPPFLEGLKSLRTLDLQSNN-LPS-LPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANN-HLTDSCF 376 (1081)
T ss_pred -CCCcccccceeeeeeehhcc-ccc-cchHHHhhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcC-cccccch
Confidence 23334468899999999887 432 111222222 236666666665 43322111123678899999999 7777655
Q ss_pred HHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHH
Q 006015 526 AAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAAL 605 (664)
Q Consensus 526 ~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~ 605 (664)
+ .+.++++|+.|++++|+ ++......+ ..++.|++|++|+|+++. +|..+..+..|+ .+.+.+|.+..+| .+
T Consensus 377 p-~l~~~~hLKVLhLsyNr-L~~fpas~~-~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~---tL~ahsN~l~~fP-e~ 448 (1081)
T KOG0618|consen 377 P-VLVNFKHLKVLHLSYNR-LNSFPASKL-RKLEELEELNLSGNKLTT-LPDTVANLGRLH---TLRAHSNQLLSFP-EL 448 (1081)
T ss_pred h-hhccccceeeeeecccc-cccCCHHHH-hchHHhHHHhcccchhhh-hhHHHHhhhhhH---HHhhcCCceeech-hh
Confidence 5 56689999999999994 332222222 237889999999999987 667776666555 7779999999998 78
Q ss_pred HhCCcccceeee-hhhcccCChhHHHHHHhcceEEEeec
Q 006015 606 LACGGITKVKLQ-AAFKQLLPQPLIDHLQARGCVFQWRN 643 (664)
Q Consensus 606 ~~~~~L~~l~l~-n~~~~~~p~~~~~~~~~~~~~~~~~~ 643 (664)
.+.++|+.+|++ |.++...-+.......+.+.++++|.
T Consensus 449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 789999999999 88885544432333556778887776
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1e-22 Score=186.60 Aligned_cols=504 Identities=18% Similarity=0.128 Sum_probs=289.7
Q ss_pred ccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhhccccccccccHHHHHhhCCCCcEeeccCCCCCChhHHH
Q 006015 12 LFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQEHLPAVLIRYSNTTHLDLSLYPRINDHSLF 91 (664)
Q Consensus 12 ~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~ 91 (664)
...+.|.||+..... .-. --.+|.+ +.....-+...+.+.+...+..+..++.|++.+.. .. ..+.
T Consensus 20 ~l~~vp~~vyq~~~t-~~e----------~e~wW~q-v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~-l~-~lp~ 85 (565)
T KOG0472|consen 20 SLKDVPTEVYQINLT-TGE----------GENWWEQ-VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK-LS-QLPA 85 (565)
T ss_pred hhhhccHHHHHHHhh-ccc----------hhhhhhh-cchhhhhhccCchhhccHhhhcccceeEEEeccch-hh-hCCH
Confidence 566777777654433 111 1234433 33333333333344455666777778888877642 22 1222
Q ss_pred HHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHH
Q 006015 92 AISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCI 171 (664)
Q Consensus 92 ~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 171 (664)
++. ....+..++++++.....+ ..+. ..+++..++.+++. ..+ .++.+..+..|+.++..+|. +... +.-
T Consensus 86 aig--~l~~l~~l~vs~n~ls~lp--~~i~-s~~~l~~l~~s~n~-~~e-l~~~i~~~~~l~dl~~~~N~-i~sl--p~~ 155 (565)
T KOG0472|consen 86 AIG--ELEALKSLNVSHNKLSELP--EQIG-SLISLVKLDCSSNE-LKE-LPDSIGRLLDLEDLDATNNQ-ISSL--PED 155 (565)
T ss_pred HHH--HHHHHHHhhcccchHhhcc--HHHh-hhhhhhhhhccccc-eee-cCchHHHHhhhhhhhccccc-cccC--chH
Confidence 222 3445677777777533222 1222 55677778877763 222 34567777888888877776 3332 222
Q ss_pred HhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcC
Q 006015 172 AVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRC 251 (664)
Q Consensus 172 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~ 251 (664)
...|.+|..+++.++ .+...+...+ .++.|++|+...|.++ ..|+.++.+.+|..|++..|....-. +|.. |
T Consensus 156 ~~~~~~l~~l~~~~n-~l~~l~~~~i--~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP---ef~g-c 227 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGN-KLKALPENHI--AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRFLP---EFPG-C 227 (565)
T ss_pred HHHHHHHHHhhcccc-chhhCCHHHH--HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccccCC---CCCc-c
Confidence 223677778888777 5555565555 3778888888777665 67888888888888888886644322 3555 7
Q ss_pred CCCCEEeccCCCCcChhhHH-HHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCc
Q 006015 252 KSLKALDMSSCQNISHLGLS-SLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSL 330 (664)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (664)
..|++|+++.|.... ++ .....++++..|+++.+ .+. +.|..+.-+++|++|++++|.++.. +..++ .+ .|
T Consensus 228 s~L~Elh~g~N~i~~---lpae~~~~L~~l~vLDLRdN-klk-e~Pde~clLrsL~rLDlSNN~is~L-p~sLg-nl-hL 299 (565)
T KOG0472|consen 228 SLLKELHVGENQIEM---LPAEHLKHLNSLLVLDLRDN-KLK-EVPDEICLLRSLERLDLSNNDISSL-PYSLG-NL-HL 299 (565)
T ss_pred HHHHHHHhcccHHHh---hHHHHhcccccceeeecccc-ccc-cCchHHHHhhhhhhhcccCCccccC-Ccccc-cc-ee
Confidence 788888887765322 33 34457788888888887 444 5677778888888888888877543 33444 44 67
Q ss_pred cEEEcCCCCCCCc------hhHHHHHhhCCC-ccEEecCCCCCCCh-------HHHHHHHhcCCCCcEEEcCCCCC--CC
Q 006015 331 KELSLSKCDGVTD------EGLSYVATKHRD-LRKLDITCCRKISD-------VSITHVTSSCTGLTSLRMESCTL--VP 394 (664)
Q Consensus 331 ~~L~l~~~~~~~~------~~~~~~~~~~~~-L~~L~l~~~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~--~~ 394 (664)
+.|.+.+++-.+- .+-...++.+.+ .+.=.++....-+. ...++ .....+.+.|.+++-.. ++
T Consensus 300 ~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~-~~~~i~tkiL~~s~~qlt~VP 378 (565)
T KOG0472|consen 300 KFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD-IYAIITTKILDVSDKQLTLVP 378 (565)
T ss_pred eehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc-hhhhhhhhhhcccccccccCC
Confidence 7777777762110 011111111110 11111111110000 00011 12244567777765332 55
Q ss_pred HHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCcc-EEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHH
Q 006015 395 REAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLS-VLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSG 473 (664)
Q Consensus 395 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 473 (664)
++.+.+.. -.-...++++.|++.. .|..+..++.+. .+.++++ .++ .....+. .+++|..|++++|. +. .
T Consensus 379 dEVfea~~--~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn-~is-fv~~~l~-~l~kLt~L~L~NN~-Ln--~ 449 (565)
T KOG0472|consen 379 DEVFEAAK--SEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNN-KIS-FVPLELS-QLQKLTFLDLSNNL-LN--D 449 (565)
T ss_pred HHHHHHhh--hcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcC-ccc-cchHHHH-hhhcceeeecccch-hh--h
Confidence 66655432 2346678888877654 344444433333 3444444 333 2233333 67888888888766 42 4
Q ss_pred HHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHH
Q 006015 474 ILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLP 553 (664)
Q Consensus 474 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~ 553 (664)
++.-+.++..|+.|+++.|. +. ..++.+.....++.+-.+++ ++... -++.+.++.+|..|++.+|. ...+.|
T Consensus 450 LP~e~~~lv~Lq~LnlS~Nr-Fr-~lP~~~y~lq~lEtllas~n-qi~~v-d~~~l~nm~nL~tLDL~nNd---lq~IPp 522 (565)
T KOG0472|consen 450 LPEEMGSLVRLQTLNLSFNR-FR-MLPECLYELQTLETLLASNN-QIGSV-DPSGLKNMRNLTTLDLQNND---LQQIPP 522 (565)
T ss_pred cchhhhhhhhhheecccccc-cc-cchHHHhhHHHHHHHHhccc-ccccc-ChHHhhhhhhcceeccCCCc---hhhCCh
Confidence 44445556678888888875 44 34455555556666666666 56553 23346678888888888873 244455
Q ss_pred HHhcCcccCeeeeccCCCC
Q 006015 554 LAHFSQNLRQINLSYTSVT 572 (664)
Q Consensus 554 ~~~~~~~L~~L~l~~n~l~ 572 (664)
..+++.+|++|++++|++.
T Consensus 523 ~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 523 ILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhccccceeEEEecCCccC
Confidence 6667888888888888877
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=3.9e-17 Score=161.54 Aligned_cols=208 Identities=25% Similarity=0.275 Sum_probs=93.2
Q ss_pred CCCCCEEEccCCCCChhhHHhhccCC---CccEEcccCCCCCChHhHHHHh---hCC-CCCcEEEcCCCCCCChH---HH
Q 006015 405 CRFLEELDLTDNEIDDEGLKSISRCS---KLSVLKLGICLNITGEGLAHVG---MCC-SKLKELDLYRCVGITDS---GI 474 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~l~~~~~~~l~---~~~-~~L~~L~l~~~~~~~~~---~~ 474 (664)
+++|++|+++++.+.......+..+. +|+.|++++| .+++.+...+. ..+ ++|++|++++|. ++.. .+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHH
Confidence 44555555554444433333332222 2555555555 44433222211 122 455555555554 3321 12
Q ss_pred HHHHhcCCCCCEEeccCCCCCCHHHHHh----hhcCCCCCEEEccCCCCCCHHH---HHHHHhcCCcCcEEeccCccccC
Q 006015 475 LTIACGCPDLEMINIAYLKDITDSSLLS----LSKCSRLNTFESRGCPLITSLG---LAAIAVGCKQLIKLDIKWCHNIN 547 (664)
Q Consensus 475 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~----l~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~i~ 547 (664)
...+..+++|++|++++|. +++..... +..+++|+.|++++| .+++.+ +...+..+++|++|++++| .++
T Consensus 158 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~ 234 (319)
T cd00116 158 AKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDN-NLT 234 (319)
T ss_pred HHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCC-cCc
Confidence 2333344555555555554 44332222 223445555555555 333322 2233344555666666665 344
Q ss_pred hhhHHHHHhcC----cccCeeeeccCCCChhHHHHh-hCCcccccceeeccCCCCHHHH-----HHHHHhC-Ccccceee
Q 006015 548 DVGMLPLAHFS----QNLRQINLSYTSVTDVGLLSL-ASISCLQNMTILHLKGLSLNGL-----AAALLAC-GGITKVKL 616 (664)
Q Consensus 548 ~~~~~~~~~~~----~~L~~L~l~~n~l~~~~~~~l-~~~~~L~~L~~l~l~~n~~~~~-----~~~~~~~-~~L~~l~l 616 (664)
+.++..+...+ +.|++|++++|.+++.+...+ ..++.+++|+.+++++|.+..- ...+... +.|+++++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 44444443332 456666666666554333322 1244445555566666555432 1122222 46666665
Q ss_pred e
Q 006015 617 Q 617 (664)
Q Consensus 617 ~ 617 (664)
.
T Consensus 315 ~ 315 (319)
T cd00116 315 K 315 (319)
T ss_pred C
Confidence 4
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=2.8e-17 Score=162.53 Aligned_cols=186 Identities=26% Similarity=0.311 Sum_probs=100.2
Q ss_pred CCCCEEEccCCCCChhhH----HhhccC-CCccEEcccCCCCCChHhHHHH---hhCCCCCcEEEcCCCCCCChHHHHHH
Q 006015 406 RFLEELDLTDNEIDDEGL----KSISRC-SKLSVLKLGICLNITGEGLAHV---GMCCSKLKELDLYRCVGITDSGILTI 477 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~ 477 (664)
++|++|++++|.+.+... ..+..+ ++|+.|++++| .++..+...+ ...++.|++|++++|. +++.++..+
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l 185 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRAL 185 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHH
Confidence 336666665555553222 223334 56666666666 5553322221 2244566667766665 554443332
Q ss_pred ---HhcCCCCCEEeccCCCCCCHHHHHh----hhcCCCCCEEEccCCCCCCHHHHHHHHhcC----CcCcEEeccCcccc
Q 006015 478 ---ACGCPDLEMINIAYLKDITDSSLLS----LSKCSRLNTFESRGCPLITSLGLAAIAVGC----KQLIKLDIKWCHNI 546 (664)
Q Consensus 478 ---~~~~~~L~~L~l~~~~~l~~~~~~~----l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~----~~L~~L~l~~~~~i 546 (664)
+..+++|++|++++|. +++..... +..+++|+.|++++| .+++.++......+ +.|++|++++| .+
T Consensus 186 ~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i 262 (319)
T cd00116 186 AEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCN-DI 262 (319)
T ss_pred HHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCC-cCchHHHHHHHHHHhccCCCceEEEccCC-CC
Confidence 2334467777777765 55444332 334666777777776 45554444444333 57777777777 45
Q ss_pred ChhhHHHHHh---cCcccCeeeeccCCCChhHHHHhhC-Cccc-ccceeeccCCC
Q 006015 547 NDVGMLPLAH---FSQNLRQINLSYTSVTDVGLLSLAS-ISCL-QNMTILHLKGL 596 (664)
Q Consensus 547 ~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~l~~-~~~L-~~L~~l~l~~n 596 (664)
++.+...+.. .+++|+.+++++|.+++.+...++. +... ..|+.+++..|
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 5444443332 2467777777777777665544432 3323 35556666554
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.76 E-value=3.4e-18 Score=194.14 Aligned_cols=313 Identities=18% Similarity=0.218 Sum_probs=168.6
Q ss_pred cCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcE
Q 006015 203 EIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQ 282 (664)
Q Consensus 203 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (664)
+|+.|.+.++.+. ..|..+ ...+|+.|++.++....- +..+.. +++|+.|+++++..... ++. +..+++|+.
T Consensus 590 ~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L--~~~~~~-l~~Lk~L~Ls~~~~l~~--ip~-ls~l~~Le~ 661 (1153)
T PLN03210 590 KLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKL--WDGVHS-LTGLRNIDLRGSKNLKE--IPD-LSMATNLET 661 (1153)
T ss_pred ccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccccc--cccccc-CCCCCEEECCCCCCcCc--CCc-cccCCcccE
Confidence 3555555555433 233333 345555555555443221 111222 55566666655433222 111 344556666
Q ss_pred eecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecC
Q 006015 283 LTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDIT 362 (664)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (664)
|++.+|..+ ...|..+..+++|+.|++++|......+..+ .+++|+.|++++|..+. .++ ....+|+.|+++
T Consensus 662 L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~--~~p---~~~~nL~~L~L~ 733 (1153)
T PLN03210 662 LKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLK--SFP---DISTNISWLDLD 733 (1153)
T ss_pred EEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCcc--ccc---cccCCcCeeecC
Confidence 666555322 3445555666666666666653222222222 35566666666664322 121 123456666666
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEEcCCCCCCC--H---HHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcc
Q 006015 363 CCRKISDVSITHVTSSCTGLTSLRMESCTLVP--R---EAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKL 437 (664)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (664)
++. +.. ++... .+++|++|.+.++.... . ..........++|+.|++++|......+..++++++|+.|++
T Consensus 734 ~n~-i~~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 734 ETA-IEE--FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred CCc-ccc--ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 554 221 11111 35566666665432100 0 000011113467888888877666666777777888888888
Q ss_pred cCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCC
Q 006015 438 GICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGC 517 (664)
Q Consensus 438 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (664)
++|..++.. .... .+++|+.|++++|..+. .++. ..++|++|+++++. ++. .+..+..+++|+.|++++|
T Consensus 810 s~C~~L~~L--P~~~-~L~sL~~L~Ls~c~~L~--~~p~---~~~nL~~L~Ls~n~-i~~-iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 810 ENCINLETL--PTGI-NLESLESLDLSGCSRLR--TFPD---ISTNISDLNLSRTG-IEE-VPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred CCCCCcCee--CCCC-CccccCEEECCCCCccc--cccc---cccccCEeECCCCC-Ccc-ChHHHhcCCCCCEEECCCC
Confidence 877555432 1111 46788888888877553 2221 23578888888876 653 3456777888888888888
Q ss_pred CCCCHHHHHHHHhcCCcCcEEeccCccccC
Q 006015 518 PLITSLGLAAIAVGCKQLIKLDIKWCHNIN 547 (664)
Q Consensus 518 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 547 (664)
..+.. ++.....+++|+.+++++|..+.
T Consensus 880 ~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 880 NNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCcCc--cCcccccccCCCeeecCCCcccc
Confidence 77765 44455677788888888886554
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=1.6e-17 Score=188.71 Aligned_cols=336 Identities=16% Similarity=0.162 Sum_probs=198.9
Q ss_pred HcCCcCcEEeccCCCC------CCchhhhhccCC-CcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHH
Q 006015 199 VKCKEIRSLDLSYLPI------TNKCLPSILKLQ-HLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLS 271 (664)
Q Consensus 199 ~~~~~L~~L~l~~~~l------~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~ 271 (664)
.++++|+.|.+..+.. ....|..+..++ +|+.|.+.++....-. . .+ . ..+|++|++.++.... ++
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP-~-~f-~-~~~L~~L~L~~s~l~~---L~ 627 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP-S-NF-R-PENLVKLQMQGSKLEK---LW 627 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC-C-cC-C-ccCCcEEECcCccccc---cc
Confidence 4677788877765422 223444455543 5777877765432221 1 12 2 5678888887765322 33
Q ss_pred HHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHh
Q 006015 272 SLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVAT 351 (664)
Q Consensus 272 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 351 (664)
..+..+++|+.|+++++..+. ..| .+..+++|+.|++.+|......+..+. .+++|+.|++++|..+. .++..+
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~-~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~--~Lp~~i- 701 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLK-EIP-DLSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCENLE--ILPTGI- 701 (1153)
T ss_pred cccccCCCCCEEECCCCCCcC-cCC-ccccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCCCcC--ccCCcC-
Confidence 334567778888887763332 222 366677888888887755455555665 67788888888776444 222222
Q ss_pred hCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCCh-------hhHH
Q 006015 352 KHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDD-------EGLK 424 (664)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------~~~~ 424 (664)
++++|+.|++++|..+.. ++ ....+|+.|+++++.. . .++... .+++|++|.+.++.... ..+.
T Consensus 702 ~l~sL~~L~Lsgc~~L~~--~p---~~~~nL~~L~L~~n~i-~--~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKS--FP---DISTNISWLDLDETAI-E--EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CCCCCCEEeCCCCCCccc--cc---cccCCcCeeecCCCcc-c--cccccc-cccccccccccccchhhccccccccchh
Confidence 567788888887764332 11 2245777777777653 1 111111 45677777776532111 0111
Q ss_pred hhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhh
Q 006015 425 SISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLS 504 (664)
Q Consensus 425 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 504 (664)
.....++|+.|++++|..+.. .+..+. ++++|+.|++++|..+. .++... .+++|+.|++++|..+.... .
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~-lP~si~-~L~~L~~L~Ls~C~~L~--~LP~~~-~L~sL~~L~Ls~c~~L~~~p----~ 843 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVE-LPSSIQ-NLHKLEHLEIENCINLE--TLPTGI-NLESLESLDLSGCSRLRTFP----D 843 (1153)
T ss_pred hhhccccchheeCCCCCCccc-cChhhh-CCCCCCEEECCCCCCcC--eeCCCC-CccccCEEECCCCCcccccc----c
Confidence 122246788888888743333 234444 67888888888877554 233222 46788888888887554211 1
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCC
Q 006015 505 KCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTS 570 (664)
Q Consensus 505 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~ 570 (664)
..++|+.|++++| .++. +|..+..+++|+.|++++|+.+..... ....+++|+.+++++|.
T Consensus 844 ~~~nL~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 844 ISTNISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCc
Confidence 2357888888887 5554 666777888888888888876554322 12236777788888775
No 18
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.4e-14 Score=128.39 Aligned_cols=186 Identities=23% Similarity=0.380 Sum_probs=104.5
Q ss_pred CCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccE
Q 006015 279 GLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRK 358 (664)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 358 (664)
.++.++++............+..+.+|+.|.+.|..+.+.....++ .-.+|+.|+++.|.+++..++.-++.+|..|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3555555554112223334455666777777777777777666666 456777777777777776666667777777777
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCC-CCHHHHHHHHhhCCCCCEEEccCC-CCChhhHHhhccCCCccEEc
Q 006015 359 LDITCCRKISDVSITHVTSSCTGLTSLRMESCTL-VPREAFVLIGQRCRFLEELDLTDN-EIDDEGLKSISRCSKLSVLK 436 (664)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~ 436 (664)
|+++.|....+.....+..-.++|+.|+++|+.. +....+..+...||+|.+|+++++ .+++.....+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 7777776544442233333345666666666533 223344444445666666666553 44444455555555555555
Q ss_pred ccCCCCCChHhHHHHhhCCCCCcEEEcCCC
Q 006015 437 LGICLNITGEGLAHVGMCCSKLKELDLYRC 466 (664)
Q Consensus 437 l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 466 (664)
++.|..+....+-.+. ..|.|.+|++.||
T Consensus 345 lsRCY~i~p~~~~~l~-s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELN-SKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeec-cCcceEEEEeccc
Confidence 5555444333333333 4455555555554
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.53 E-value=4.1e-16 Score=143.53 Aligned_cols=290 Identities=16% Similarity=0.049 Sum_probs=167.2
Q ss_pred CCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCc
Q 006015 126 NLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIR 205 (664)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 205 (664)
.-++++|..| .+..++...|..+++||.|+|++|. ++..+ +..++++++|.+|.+.++..+++.+-..| .++..++
T Consensus 68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F-~gL~slq 143 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNN-ISFIA-PDAFKGLASLLSLVLYGNNKITDLPKGAF-GGLSSLQ 143 (498)
T ss_pred cceEEEeccC-CcccCChhhccchhhhceecccccc-hhhcC-hHhhhhhHhhhHHHhhcCCchhhhhhhHh-hhHHHHH
Confidence 4566777776 6777777788888888888888876 66555 44445577777777777557777777766 4777788
Q ss_pred EEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeec
Q 006015 206 SLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTL 285 (664)
Q Consensus 206 ~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (664)
.|.+.-+++.......+..+++|..|.+..+..... .-..+.. +..++.+.+..++...+= +++.+..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i-~~~tf~~-l~~i~tlhlA~np~icdC-------nL~wla~--- 211 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSI-CKGTFQG-LAAIKTLHLAQNPFICDC-------NLPWLAD--- 211 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhh-ccccccc-hhccchHhhhcCcccccc-------ccchhhh---
Confidence 887777777766666777777777777776543221 1112222 455566655554432210 0010000
Q ss_pred CCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCC
Q 006015 286 AHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCR 365 (664)
Q Consensus 286 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 365 (664)
.....+..++.........+....+.......+......+.+=-.+.|. .....-...++.+++|++|++++|.
T Consensus 212 -----~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~-~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 212 -----DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDF-PDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred -----HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccC-cCCcChHHHHhhcccceEeccCCCc
Confidence 0001111122222222222222222222222222111111111111111 2222333446788888888888876
Q ss_pred CCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCC
Q 006015 366 KISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICL 441 (664)
Q Consensus 366 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (664)
++... ...+.....+++|.+..|.. ...-...++++..|+.|++.+|+|+...+.+|.....|..|.+-.|+
T Consensus 286 -i~~i~-~~aFe~~a~l~eL~L~~N~l--~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 286 -ITRIE-DGAFEGAAELQELYLTRNKL--EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred -cchhh-hhhhcchhhhhhhhcCcchH--HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 44432 33445677888888888665 33334455578888899999998888888888888888888888773
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=2.7e-15 Score=138.22 Aligned_cols=271 Identities=16% Similarity=0.096 Sum_probs=190.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCc
Q 006015 380 TGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLK 459 (664)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 459 (664)
+.-..+++..|.. +. .+...++.+++|+.|++++|.|+.+.+.+|..+++|..|.+.++.+|++..-..|. ++..|+
T Consensus 67 ~~tveirLdqN~I-~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~-gL~slq 143 (498)
T KOG4237|consen 67 PETVEIRLDQNQI-SS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG-GLSSLQ 143 (498)
T ss_pred CcceEEEeccCCc-cc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh-hHHHHH
Confidence 3567777777553 22 22333347889999999999999988999998888888888773388886555555 788888
Q ss_pred EEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHH----------HHHH
Q 006015 460 ELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGL----------AAIA 529 (664)
Q Consensus 460 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~----------~~~~ 529 (664)
.|.+.-|+ +. -.....+..+++|..|.+.+|. +.......+..+.+++.+++..|+.+.+-.+ +..+
T Consensus 144 rLllNan~-i~-Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 144 RLLLNANH-IN-CIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHhcChhh-hc-chhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 88887766 43 3456677778999999999987 7766666788888899998888764322100 0000
Q ss_pred hcC----------------------CcCcEE--e-ccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcc
Q 006015 530 VGC----------------------KQLIKL--D-IKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISC 584 (664)
Q Consensus 530 ~~~----------------------~~L~~L--~-l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 584 (664)
+.. .+++.+ . -+.| ..........+..+++|+.|++++|+|+.+...+|....
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d-~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a- 298 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSED-FPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA- 298 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhcccc-CcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh-
Confidence 000 011111 1 1122 222233333344589999999999999998877765555
Q ss_pred cccceeeccCCCCHHHHHHHHHh-CCcccceeee-hhhcccCChhHHHHHHhcceEEEeecccccccCCc-cccccccc
Q 006015 585 LQNMTILHLKGLSLNGLAAALLA-CGGITKVKLQ-AAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDP-KSWKLLLE 660 (664)
Q Consensus 585 L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~-n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 660 (664)
+++.+++..|++..+....|. +..|+.|+|. |+++...|-.+.....+....+..|++.|+|..++ ..|...-+
T Consensus 299 --~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 299 --ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred --hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC
Confidence 555888999999999888776 9999999999 99997777665555667888888999999997777 56776544
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=3.7e-14 Score=149.24 Aligned_cols=203 Identities=19% Similarity=0.154 Sum_probs=120.6
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCc
Q 006015 380 TGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLK 459 (664)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 459 (664)
++|+.|++++|... .+.. ..++|+.|++++|++... +. ..++|+.|++++| .++.. .. ...+|+
T Consensus 262 ~sL~~L~Ls~N~L~---~Lp~---lp~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N-~L~~L--p~---lp~~L~ 325 (788)
T PRK15387 262 PGLLELSIFSNPLT---HLPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDN-QLASL--PA---LPSELC 325 (788)
T ss_pred cccceeeccCCchh---hhhh---chhhcCEEECcCCccccc-cc---cccccceeECCCC-ccccC--CC---Cccccc
Confidence 45566666554421 1111 224566666666665532 11 1356777777776 55542 11 224566
Q ss_pred EEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEe
Q 006015 460 ELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLD 539 (664)
Q Consensus 460 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 539 (664)
.|.+++|. ++ .++.. .++|++|++++|. ++.... ..++|+.|++++| .++. ++.. .++|+.|+
T Consensus 326 ~L~Ls~N~-L~--~LP~l---p~~Lq~LdLS~N~-Ls~LP~----lp~~L~~L~Ls~N-~L~~--LP~l---~~~L~~Ld 388 (788)
T PRK15387 326 KLWAYNNQ-LT--SLPTL---PSGLQELSVSDNQ-LASLPT----LPSELYKLWAYNN-RLTS--LPAL---PSGLKELI 388 (788)
T ss_pred ccccccCc-cc--ccccc---ccccceEecCCCc-cCCCCC----CCcccceehhhcc-cccc--Cccc---ccccceEE
Confidence 67777665 43 22221 1367777777776 653221 1346777777777 4543 3332 34788888
Q ss_pred ccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee-h
Q 006015 540 IKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-A 618 (664)
Q Consensus 540 l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n 618 (664)
+++|+ ++.. |. ..++|+.|++++|+++. +|. + ...|..+++++|.++.+|..+.++++|+.|+|+ |
T Consensus 389 Ls~N~-Lt~L---P~--l~s~L~~LdLS~N~Lss-IP~----l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 389 VSGNR-LTSL---PV--LPSELKELMVSGNRLTS-LPM----L--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred ecCCc-ccCC---CC--cccCCCEEEccCCcCCC-CCc----c--hhhhhhhhhccCcccccChHHhhccCCCeEECCCC
Confidence 88883 3321 11 13678888888888875 332 1 135567888888888888888888888889988 8
Q ss_pred hhcccCChhH
Q 006015 619 AFKQLLPQPL 628 (664)
Q Consensus 619 ~~~~~~p~~~ 628 (664)
.+++..|..+
T Consensus 456 ~Ls~~~~~~L 465 (788)
T PRK15387 456 PLSERTLQAL 465 (788)
T ss_pred CCCchHHHHH
Confidence 8887777764
No 22
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.42 E-value=4.2e-12 Score=115.90 Aligned_cols=256 Identities=24% Similarity=0.284 Sum_probs=118.8
Q ss_pred HHHhhcCCCccEEEecCCccCHhHHHHHHhcC---CCccEEEcCCCCCCCch---h-------HHHHHhhCCCccEEecC
Q 006015 296 ANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWC---VSLKELSLSKCDGVTDE---G-------LSYVATKHRDLRKLDIT 362 (664)
Q Consensus 296 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~---~~L~~L~l~~~~~~~~~---~-------~~~~~~~~~~L~~L~l~ 362 (664)
.+.+.....++.++++||.+.....+.+++.+ ++|+..++++. ++.. . +...+..+|+|++++|+
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 34455667888888888888777666665444 34555555432 1111 1 12223345566666666
Q ss_pred CCCCCC--hHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCC
Q 006015 363 CCRKIS--DVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGIC 440 (664)
Q Consensus 363 ~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (664)
+|..-. ...+..++.++.+|++|.+.+|..- ..+-..++..+ .+|. .....+.-++|+++..+.|
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al---~~l~---------~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRAL---FELA---------VNKKAASKPKLRVFICGRN 167 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHH---HHHH---------HHhccCCCcceEEEEeecc
Confidence 554211 1222334444444444444444321 11111111000 0000 0011223456777777776
Q ss_pred CCCChHhHHHH---hhCCCCCcEEEcCCCCCCChHHH---HHHHhcCCCCCEEeccCCCCCCHHHHHhhh----cCCCCC
Q 006015 441 LNITGEGLAHV---GMCCSKLKELDLYRCVGITDSGI---LTIACGCPDLEMINIAYLKDITDSSLLSLS----KCSRLN 510 (664)
Q Consensus 441 ~~l~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~ 510 (664)
.+.+.+...+ .+..+.|+.+.++.|. +-..++ ..-+..|++|+.|++.+|. ++...-..+. .+++|+
T Consensus 168 -rlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 168 -RLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLR 244 (382)
T ss_pred -ccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchhe
Confidence 6655443332 3345677777777665 333333 3334456666666666665 5544433322 345555
Q ss_pred EEEccCCCCCCHHHHHHHH----hcCCcCcEEeccCccccChhhHHHHHh---cCcccCeeeeccCCC
Q 006015 511 TFESRGCPLITSLGLAAIA----VGCKQLIKLDIKWCHNINDVGMLPLAH---FSQNLRQINLSYTSV 571 (664)
Q Consensus 511 ~L~l~~~~~l~~~~~~~~~----~~~~~L~~L~l~~~~~i~~~~~~~~~~---~~~~L~~L~l~~n~l 571 (664)
.|.+++| .+...|...++ ...|.|+.|.+.+| .|+..+...+.. ..|.|..|+|++|.+
T Consensus 245 El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 245 ELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eeccccc-ccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 5555555 33332222211 22445555555555 333322222111 134555555555554
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.41 E-value=2.6e-12 Score=117.16 Aligned_cols=190 Identities=23% Similarity=0.373 Sum_probs=127.2
Q ss_pred hCCCCCEEEccCCCCChhhHHhh----ccCCCccEEcccCCCCCChHhHHHHhh------------CCCCCcEEEcCCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSI----SRCSKLSVLKLGICLNITGEGLAHVGM------------CCSKLKELDLYRCV 467 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~l~~~~~~~l~~------------~~~~L~~L~l~~~~ 467 (664)
.+|.|++++|++|.+...++..| ..+..|+.|.+.+| .+...+-..+++ .-+.|+.+...+|.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 56677777777777666555444 34677777777777 666544333221 34788888888776
Q ss_pred CCCh---HHHHHHHhcCCCCCEEeccCCCCCCHHHH----HhhhcCCCCCEEEccCCCCCCHH---HHHHHHhcCCcCcE
Q 006015 468 GITD---SGILTIACGCPDLEMINIAYLKDITDSSL----LSLSKCSRLNTFESRGCPLITSL---GLAAIAVGCKQLIK 537 (664)
Q Consensus 468 ~~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~l~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~~~L~~ 537 (664)
+.+ ..+...++.++.|+.+.++.|. +..... +.+..|++|+.|+|.+| ..+.. .+...+..+++|+.
T Consensus 169 -len~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 169 -LENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred -cccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHHHHHhcccchhee
Confidence 333 3466677778888888888876 554333 45567888888888888 44432 24556667778888
Q ss_pred EeccCccccChhhHHHHHh----cCcccCeeeeccCCCChhHHHHhhC-CcccccceeeccCCCCH
Q 006015 538 LDIKWCHNINDVGMLPLAH----FSQNLRQINLSYTSVTDVGLLSLAS-ISCLQNMTILHLKGLSL 598 (664)
Q Consensus 538 L~l~~~~~i~~~~~~~~~~----~~~~L~~L~l~~n~l~~~~~~~l~~-~~~L~~L~~l~l~~n~~ 598 (664)
|++++| .+...|...+.. ..|+|+.|.+.+|.|+......+.. +...+.|..|++++|.+
T Consensus 246 l~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred eccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888888 677777766543 3678888888888877666544332 33466777777888877
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.2e-13 Score=129.47 Aligned_cols=216 Identities=17% Similarity=0.160 Sum_probs=127.8
Q ss_pred hCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhh-ccCC
Q 006015 352 KHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSI-SRCS 430 (664)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~ 430 (664)
++.+|+++.+.+++ +...........|++++.|+++.|-......+..+++.+|+|+.|+++.|++....-... ..++
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 44455555555444 333332234455666666666665544455566666667777777777665433111111 1356
Q ss_pred CccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCC
Q 006015 431 KLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLN 510 (664)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~ 510 (664)
.|+.|.++.| .++...+..+...+|+|+.|.+.+|..+....... .-+..|+.|+|++|..++.........+|.|+
T Consensus 198 ~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccccccchh
Confidence 7788888888 77777777777678888888888774332211111 12356788888887755544455566788888
Q ss_pred EEEccCCCCCCHHHHHHH-----HhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCCh
Q 006015 511 TFESRGCPLITSLGLAAI-----AVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTD 573 (664)
Q Consensus 511 ~L~l~~~~~l~~~~~~~~-----~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 573 (664)
.|.++.| .+++...++. ...+++|++|++..| .|.+-....-...+++|+.|.+..|.++.
T Consensus 275 ~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 275 QLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhcccc-CcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhcccccccc
Confidence 8888877 5555333332 445778888888887 34333333333336777777777776543
No 25
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.35 E-value=6e-12 Score=132.63 Aligned_cols=252 Identities=31% Similarity=0.450 Sum_probs=113.0
Q ss_pred HhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCC-CCCChH--HHHHHHhcCCCCcEEEcCCCCCC
Q 006015 317 RAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCC-RKISDV--SITHVTSSCTGLTSLRMESCTLV 393 (664)
Q Consensus 317 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 393 (664)
......+...++.|+.+.+.+|..+.+.++......++.|++|+++++ ...... ........+++|+.|+++.+..+
T Consensus 177 ~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 177 DKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred HHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhcc
Confidence 333333443456666666666655555445555556666666666552 111111 11223334455555555555545
Q ss_pred CHHHHHHHHhhCCCCCEEEccCCC-CChhhHHhhcc-CCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCC---CC
Q 006015 394 PREAFVLIGQRCRFLEELDLTDNE-IDDEGLKSISR-CSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRC---VG 468 (664)
Q Consensus 394 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~---~~ 468 (664)
++.++..++..|++|+.|.+.++. +++.+...+.. ++.|+.|++++|..+++.++..+..++++|+.+.+..+ ..
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~ 336 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPS 336 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCcc
Confidence 555555555445555555544443 44444444333 44455555555544444444444444554444433322 22
Q ss_pred CChHHHHHHHhcCC-CCCEEeccCCCCCCHHHHHhhhcCCCCC-EEEccCCCCCCHHHHHHHHhcCCcCcEEeccCcccc
Q 006015 469 ITDSGILTIACGCP-DLEMINIAYLKDITDSSLLSLSKCSRLN-TFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNI 546 (664)
Q Consensus 469 ~~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i 546 (664)
+++..+........ .+..+.+.+|+++++....... ..... .+.+.+|+.++ .++......+..++.|+++.|..+
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccCCccceEecccCccc
Confidence 33333322222221 3333333333333333333322 12222 34444444443 333333333334566666666555
Q ss_pred ChhhHHHHHhcCcccCeeeeccCC
Q 006015 547 NDVGMLPLAHFSQNLRQINLSYTS 570 (664)
Q Consensus 547 ~~~~~~~~~~~~~~L~~L~l~~n~ 570 (664)
++..+......+.+++.+++.++.
T Consensus 415 t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 415 TDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred cccchHHHhhhhhccccCCccCcc
Confidence 554444433334455555555554
No 26
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.33 E-value=1.6e-11 Score=129.41 Aligned_cols=205 Identities=29% Similarity=0.499 Sum_probs=110.7
Q ss_pred cCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhC
Q 006015 326 WCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRC 405 (664)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (664)
.+++|+.|++..+..+++.++......|++|++|.+.+|..+++..+..+...++.|++|+++.|..+++.++..+..+|
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 44555555555554455555555554555566655555555555555555555666666666666655555565555566
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCC-hHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNIT-GEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDL 484 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (664)
++++.+.+....- ++.++.+.+.++.... +.........+++++.+.+.+|. .++.+....+.+|+.|
T Consensus 321 ~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 321 PNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL 389 (482)
T ss_pred cchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc
Confidence 6666655433211 4455555555543333 23444445566777777777666 5555554555555555
Q ss_pred CEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHH
Q 006015 485 EMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGML 552 (664)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~ 552 (664)
+ ..+..+. .....++.|.++.|..++...+......+..++.+++.+|..++..+..
T Consensus 390 ~-~~l~~~~----------~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~ 446 (482)
T KOG1947|consen 390 T-ESLELRL----------CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLE 446 (482)
T ss_pred c-hHHHHHh----------ccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhh
Confidence 2 2222111 1122267777777766665544443333666777777777665554443
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.31 E-value=3.8e-12 Score=134.25 Aligned_cols=32 Identities=22% Similarity=0.093 Sum_probs=13.3
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCC
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGC 517 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (664)
|+.|++++|. ++. .+..+.++++|+.|++++|
T Consensus 424 L~~L~Ls~Nq-Lt~-LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 424 LLSLSVYRNQ-LTR-LPESLIHLSSETTVNLEGN 455 (788)
T ss_pred hhhhhhccCc-ccc-cChHHhhccCCCeEECCCC
Confidence 4444444443 332 2233344444444444444
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.18 E-value=1.9e-11 Score=129.98 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=54.6
Q ss_pred CccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCc
Q 006015 304 MLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLT 383 (664)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (664)
+...|+++++.++. .+..+ .++|+.|++++|. ++ .++..+ .++|+.|++++|. +.. ++..+ .++|+
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I---p~~L~~L~Ls~N~-Lt--sLP~~l--~~nL~~L~Ls~N~-Lts--LP~~l--~~~L~ 244 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI---PEQITTLILDNNE-LK--SLPENL--QGNIKTLYANSNQ-LTS--IPATL--PDTIQ 244 (754)
T ss_pred CceEEEeCCCCcCc-CCccc---ccCCcEEEecCCC-CC--cCChhh--ccCCCEEECCCCc-ccc--CChhh--hcccc
Confidence 55677777665543 22222 1457777777664 33 222221 2466666666654 222 11111 23566
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCC
Q 006015 384 SLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNIT 444 (664)
Q Consensus 384 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (664)
.|++++|... .....+ ..+|+.|++++|++.. .+..+ .++|+.|++++| .++
T Consensus 245 ~L~Ls~N~L~--~LP~~l---~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N-~Lt 296 (754)
T PRK15370 245 EMELSINRIT--ELPERL---PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDN-SIR 296 (754)
T ss_pred EEECcCCccC--cCChhH---hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCC-ccc
Confidence 6666655432 111111 1345556665555542 22222 135555555555 444
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.1e-11 Score=116.33 Aligned_cols=164 Identities=21% Similarity=0.195 Sum_probs=87.1
Q ss_pred HhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhh-ccC
Q 006015 147 AEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSI-LKL 225 (664)
Q Consensus 147 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-~~l 225 (664)
+++.+|+++.|.++. +..++.....+.||+++.|+++.|-.-.-.++..++..+|+|+.|+++.|.+..-.-... ..+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 346677777777766 665555455666777777777777444555666666777777777777775442111111 135
Q ss_pred CCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCc
Q 006015 226 QHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSML 305 (664)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 305 (664)
++|+.|.++.|.+.... ...+...+|+|+.|.+..|....... .....+..|++|+++++..+........+.++.|
T Consensus 197 ~~lK~L~l~~CGls~k~-V~~~~~~fPsl~~L~L~~N~~~~~~~--~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L 273 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKD-VQWILLTFPSLEVLYLEANEIILIKA--TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL 273 (505)
T ss_pred hhhheEEeccCCCCHHH-HHHHHHhCCcHHHhhhhcccccceec--chhhhhhHHhhccccCCcccccccccccccccch
Confidence 66666666666555322 22333336666666666653221111 1112234455555555533332222334444555
Q ss_pred cEEEecCCc
Q 006015 306 QSIKLDGSV 314 (664)
Q Consensus 306 ~~L~l~~~~ 314 (664)
+.|+++.+.
T Consensus 274 ~~Lnls~tg 282 (505)
T KOG3207|consen 274 NQLNLSSTG 282 (505)
T ss_pred hhhhccccC
Confidence 555554443
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.04 E-value=5e-10 Score=119.31 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=36.3
Q ss_pred CCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCC
Q 006015 176 KNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLK 255 (664)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (664)
.+...|+++++ .+...|... .++|+.|++++|.++ ..|..+. ++|+.|++++|.+... +. .+ .++|+
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~I----p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~-~l---~~~L~ 244 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACI----PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PA-TL---PDTIQ 244 (754)
T ss_pred cCceEEEeCCC-CcCcCCccc----ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Ch-hh---hcccc
Confidence 34556666655 333333221 145666666666655 2333332 3566666666543321 11 11 23566
Q ss_pred EEeccCCC
Q 006015 256 ALDMSSCQ 263 (664)
Q Consensus 256 ~L~l~~~~ 263 (664)
.|++++|.
T Consensus 245 ~L~Ls~N~ 252 (754)
T PRK15370 245 EMELSINR 252 (754)
T ss_pred EEECcCCc
Confidence 66666554
No 31
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.04 E-value=2e-12 Score=105.25 Aligned_cols=159 Identities=17% Similarity=0.179 Sum_probs=71.0
Q ss_pred CCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCC
Q 006015 429 CSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSR 508 (664)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 508 (664)
...++.|.+++| .++.. +..++ .+.+|+.|.+.+|. + +.++..++++++|+.|+++-|. +. ..+..|+.+|.
T Consensus 32 ~s~ITrLtLSHN-Kl~~v-ppnia-~l~nlevln~~nnq-i--e~lp~~issl~klr~lnvgmnr-l~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVV-PPNIA-ELKNLEVLNLSNNQ-I--EELPTSISSLPKLRILNVGMNR-LN-ILPRGFGSFPA 103 (264)
T ss_pred hhhhhhhhcccC-ceeec-CCcHH-Hhhhhhhhhcccch-h--hhcChhhhhchhhhheecchhh-hh-cCccccCCCch
Confidence 344455555555 44432 22222 34455555555443 3 2333334444555555554443 21 23334444444
Q ss_pred CCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccc
Q 006015 509 LNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNM 588 (664)
Q Consensus 509 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 588 (664)
|+.|++..| .+....++.-|..+ ..|+.|++++|.+.- .|..+ .+|++|
T Consensus 104 levldltyn-nl~e~~lpgnff~m--------------------------~tlralyl~dndfe~-lp~dv---g~lt~l 152 (264)
T KOG0617|consen 104 LEVLDLTYN-NLNENSLPGNFFYM--------------------------TTLRALYLGDNDFEI-LPPDV---GKLTNL 152 (264)
T ss_pred hhhhhcccc-ccccccCCcchhHH--------------------------HHHHHHHhcCCCccc-CChhh---hhhcce
Confidence 444444444 33333333333334 455555555554332 22222 223333
Q ss_pred eeeccCCCCHHHHHHHHHhCCcccceeee-hhhcccCChh
Q 006015 589 TILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQLLPQP 627 (664)
Q Consensus 589 ~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~ 627 (664)
+++.+..|.+-.+|..+..+..|++|+++ |.+. .+|+.
T Consensus 153 qil~lrdndll~lpkeig~lt~lrelhiqgnrl~-vlppe 191 (264)
T KOG0617|consen 153 QILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT-VLPPE 191 (264)
T ss_pred eEEeeccCchhhCcHHHHHHHHHHHHhcccceee-ecChh
Confidence 35555555555555555555555555555 4444 44444
No 32
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.95 E-value=3.3e-12 Score=104.02 Aligned_cols=156 Identities=15% Similarity=0.101 Sum_probs=111.6
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+.+++.|.+++++++. .+..++.+.+|+.|++++| ++++. +..+. .++.|+.|.++-|. + ..++.-+.++|.
T Consensus 31 ~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nn-qie~l-p~~is-sl~klr~lnvgmnr-l--~~lprgfgs~p~ 103 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNN-QIEEL-PTSIS-SLPKLRILNVGMNR-L--NILPRGFGSFPA 103 (264)
T ss_pred chhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccc-hhhhc-Chhhh-hchhhhheecchhh-h--hcCccccCCCch
Confidence 66788899999998876 4567888999999999999 88774 34444 78999999998776 3 246677788999
Q ss_pred CCEEeccCCCCCCH-HHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccC
Q 006015 484 LEMINIAYLKDITD-SSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLR 562 (664)
Q Consensus 484 L~~L~l~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~ 562 (664)
|+.|++.+|. +.+ ..+..|.-+..|+-|.+++|. ..- ++..++++++|+.|.+++|..++.-. -.+.+..|+
T Consensus 104 levldltynn-l~e~~lpgnff~m~tlralyl~dnd-fe~--lp~dvg~lt~lqil~lrdndll~lpk---eig~lt~lr 176 (264)
T KOG0617|consen 104 LEVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND-FEI--LPPDVGKLTNLQILSLRDNDLLSLPK---EIGDLTRLR 176 (264)
T ss_pred hhhhhccccc-cccccCCcchhHHHHHHHHHhcCCC-ccc--CChhhhhhcceeEEeeccCchhhCcH---HHHHHHHHH
Confidence 9999999987 554 344556667778888888883 222 56666778888888888875432211 111245566
Q ss_pred eeeeccCCCCh
Q 006015 563 QINLSYTSVTD 573 (664)
Q Consensus 563 ~L~l~~n~l~~ 573 (664)
+|.+.+|.++-
T Consensus 177 elhiqgnrl~v 187 (264)
T KOG0617|consen 177 ELHIQGNRLTV 187 (264)
T ss_pred HHhcccceeee
Confidence 66666666553
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=1.4e-09 Score=97.24 Aligned_cols=162 Identities=16% Similarity=0.192 Sum_probs=106.1
Q ss_pred CCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHh-hcCC
Q 006015 225 LQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGL-KKLS 303 (664)
Q Consensus 225 l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~l~ 303 (664)
...++-+.+.++..-+......++..++.++++++.+|.......+..++.++|.|+.|+++.| .+...+ ..+ ....
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I-~~lp~p~~ 121 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDI-KSLPLPLK 121 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCcc-ccCccccc
Confidence 3355567777777666666667888789999999999998888889999999999999999988 443221 122 2445
Q ss_pred CccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCC----CCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcC
Q 006015 304 MLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCD----GVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSC 379 (664)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (664)
+|+.|.+.|+.+.......+...+|.+++|+++.+. .+.+.... ...+.+++++...|..........+.+.+
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e---~~s~~v~tlh~~~c~~~~w~~~~~l~r~F 198 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE---DWSTEVLTLHQLPCLEQLWLNKNKLSRIF 198 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccc---ccchhhhhhhcCCcHHHHHHHHHhHHhhc
Confidence 888999988888766666666677888888887763 11111111 12234555555555543333334444445
Q ss_pred CCCcEEEcCCCC
Q 006015 380 TGLTSLRMESCT 391 (664)
Q Consensus 380 ~~L~~L~l~~~~ 391 (664)
|++..+.+..|.
T Consensus 199 pnv~sv~v~e~P 210 (418)
T KOG2982|consen 199 PNVNSVFVCEGP 210 (418)
T ss_pred ccchheeeecCc
Confidence 555555555543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=8.2e-10 Score=94.89 Aligned_cols=13 Identities=8% Similarity=0.041 Sum_probs=6.2
Q ss_pred HHhCCcccceeee
Q 006015 605 LLACGGITKVKLQ 617 (664)
Q Consensus 605 ~~~~~~L~~l~l~ 617 (664)
+..+|+|+.||-.
T Consensus 136 i~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 136 IYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT-SEETTE
T ss_pred HHHcChhheeCCE
Confidence 3446777776633
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.79 E-value=1.6e-09 Score=93.04 Aligned_cols=103 Identities=29% Similarity=0.346 Sum_probs=21.0
Q ss_pred CCCCEEEccCCCCChhhHHhhc-cCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSIS-RCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDL 484 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (664)
..+++|++.++.|... +.++ .+.+|+.|++++| .++. ++.+. .++.|+.|++++|. +++.+ ..+...+|+|
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N-~I~~--l~~l~-~L~~L~~L~L~~N~-I~~i~-~~l~~~lp~L 90 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNN-QITK--LEGLP-GLPRLKTLDLSNNR-ISSIS-EGLDKNLPNL 90 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS----S-C-HHHHHH-TT-
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCC-CCcc--ccCcc-ChhhhhhcccCCCC-CCccc-cchHHhCCcC
Confidence 3455555555555442 2333 2445555555555 4443 22222 34555555555544 33210 1111234555
Q ss_pred CEEeccCCCCCCHH-HHHhhhcCCCCCEEEccCC
Q 006015 485 EMINIAYLKDITDS-SLLSLSKCSRLNTFESRGC 517 (664)
Q Consensus 485 ~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~ 517 (664)
++|++++|. +.+. ....+..+++|+.|++.+|
T Consensus 91 ~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 91 QELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp -EEE-TTS----SCCCCGGGGG-TT--EEE-TT-
T ss_pred CEEECcCCc-CCChHHhHHHHcCCCcceeeccCC
Confidence 555555544 3321 1233334444444444444
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=2e-09 Score=96.27 Aligned_cols=13 Identities=23% Similarity=0.598 Sum_probs=7.2
Q ss_pred cCCCccEEEcCCC
Q 006015 326 WCVSLKELSLSKC 338 (664)
Q Consensus 326 ~~~~L~~L~l~~~ 338 (664)
.|..|..|.+++.
T Consensus 180 f~~~l~~l~vs~~ 192 (490)
T KOG1259|consen 180 FCTQLVALVVTPV 192 (490)
T ss_pred hhhheeEEEecCC
Confidence 4455666665543
No 37
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.78 E-value=2.6e-09 Score=70.15 Aligned_cols=38 Identities=26% Similarity=0.443 Sum_probs=33.3
Q ss_pred cccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhh
Q 006015 13 FDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKH 52 (664)
Q Consensus 13 ~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~ 52 (664)
|+.||+||+.+||+ |++ .+|+.++++|||+|++++...
T Consensus 1 i~~LP~Eil~~If~-~L~-~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFS-YLD-PRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHT-TS--HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHCCh
Confidence 57899999999999 998 999999999999999998644
No 38
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.76 E-value=1.8e-07 Score=82.92 Aligned_cols=197 Identities=19% Similarity=0.185 Sum_probs=118.6
Q ss_pred HHHhhCCCCCEEEccCCCCChhhHH----hhccCCCccEEcccCCCCCChHhHHHHh------------hCCCCCcEEEc
Q 006015 400 LIGQRCRFLEELDLTDNEIDDEGLK----SISRCSKLSVLKLGICLNITGEGLAHVG------------MCCSKLKELDL 463 (664)
Q Consensus 400 ~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~l~~~~~~~l~------------~~~~~L~~L~l 463 (664)
++. .||.|+.++++.|.+....+. .+++...|.+|.+++| .+...+-..++ ..-|.|+.+..
T Consensus 87 aLl-kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 87 ALL-KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHh-cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 344 677777777777766654443 3345677777777777 55533222111 13477888877
Q ss_pred CCCCCC--ChHHHHHHHhcCCCCCEEeccCCCCCCHHHHH-----hhhcCCCCCEEEccCCCCCCHHH---HHHHHhcCC
Q 006015 464 YRCVGI--TDSGILTIACGCPDLEMINIAYLKDITDSSLL-----SLSKCSRLNTFESRGCPLITSLG---LAAIAVGCK 533 (664)
Q Consensus 464 ~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----~l~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~~ 533 (664)
..|..- +.......+++-.+|+.+.+..|. |...... .+..+.+|+.|++.+| ..+..+ +...+...+
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDN-tft~~gS~~La~al~~W~ 242 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDN-TFTLEGSRYLADALCEWN 242 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeecccc-chhhhhHHHHHHHhcccc
Confidence 776522 223344555555678888888876 6554333 3345778888888888 444433 344455567
Q ss_pred cCcEEeccCccccChhhHHHHHh-----cCcccCeeeeccCCCChhHHHHh--hC--CcccccceeeccCCCCHHHH
Q 006015 534 QLIKLDIKWCHNINDVGMLPLAH-----FSQNLRQINLSYTSVTDVGLLSL--AS--ISCLQNMTILHLKGLSLNGL 601 (664)
Q Consensus 534 ~L~~L~l~~~~~i~~~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~~l--~~--~~~L~~L~~l~l~~n~~~~~ 601 (664)
.|+.|.+.+| .++..|...+.. ..|+|+.|...+|.+.+.....+ .. =..++.|..+...+|++...
T Consensus 243 ~lrEL~lnDC-lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 243 LLRELRLNDC-LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhhhccccch-hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 7888999888 666666655432 26889999999887544332110 00 12233444555667777654
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.74 E-value=1.5e-07 Score=83.34 Aligned_cols=97 Identities=20% Similarity=0.263 Sum_probs=58.1
Q ss_pred HHHhhcCCCccEEEecCCccCHhHHHHHHhcCC---CccEEEcCCCC-CCCchh-------HHHHHhhCCCccEEecCCC
Q 006015 296 ANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCV---SLKELSLSKCD-GVTDEG-------LSYVATKHRDLRKLDITCC 364 (664)
Q Consensus 296 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~---~L~~L~l~~~~-~~~~~~-------~~~~~~~~~~L~~L~l~~~ 364 (664)
...+..+..+..++++||.+......++++... +|+...++.-. +..... +...+-+||+|++.++++|
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 344555778888888888888777777765444 45555554321 000001 2233457788888888877
Q ss_pred CCCC--hHHHHHHHhcCCCCcEEEcCCCCC
Q 006015 365 RKIS--DVSITHVTSSCTGLTSLRMESCTL 392 (664)
Q Consensus 365 ~~~~--~~~~~~~~~~~~~L~~L~l~~~~~ 392 (664)
..-. ...+.+++.+...|++|.+++|..
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 5322 123455666677777777777654
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.64 E-value=7.2e-08 Score=101.98 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=80.3
Q ss_pred CCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCC
Q 006015 430 SKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRL 509 (664)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 509 (664)
.+|++|+++|...+...-+..++..+|+|+.|.+.+-. +..+.+..++.++|+|..|+++++. +++. ..++++++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISGTN-ISNL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCce-ecchhHHHHhhccCccceeecCCCC-ccCc--HHHhccccH
Confidence 45666666665444444445555566666666666544 3334456666666666666666655 5533 556666666
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHH-HHh---cCcccCeeeeccCCCChhHHHHh
Q 006015 510 NTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLP-LAH---FSQNLRQINLSYTSVTDVGLLSL 579 (664)
Q Consensus 510 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~-~~~---~~~~L~~L~l~~n~l~~~~~~~l 579 (664)
+.|.+.+-+..+...+.+.+ ++++|+.||||.-....+..+.. ..+ .+|+|+.||.|+..+.+...+.+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred HHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 66666665433323233333 56677777777654433331111 111 26677777777766666555443
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=1.3e-08 Score=91.32 Aligned_cols=139 Identities=14% Similarity=0.078 Sum_probs=96.4
Q ss_pred CCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcc
Q 006015 481 CPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQN 560 (664)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 560 (664)
.+.|+.+++++|. ++. .-+.+.-.|.++.|+++.| .+.. +. .+..+++|..||+++|.. .....+...+.+
T Consensus 283 Wq~LtelDLS~N~-I~~-iDESvKL~Pkir~L~lS~N-~i~~--v~-nLa~L~~L~~LDLS~N~L---s~~~Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQ-IDESVKLAPKLRRLILSQN-RIRT--VQ-NLAELPQLQLLDLSGNLL---AECVGWHLKLGN 353 (490)
T ss_pred Hhhhhhccccccc-hhh-hhhhhhhccceeEEecccc-ceee--eh-hhhhcccceEeecccchh---HhhhhhHhhhcC
Confidence 4568888888876 543 3344555788888888888 4433 22 255788888889888842 333333344678
Q ss_pred cCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHH--HHhCCcccceeee-hhhcccCChhHHHHHHh
Q 006015 561 LRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAA--LLACGGITKVKLQ-AAFKQLLPQPLIDHLQA 634 (664)
Q Consensus 561 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~--~~~~~~L~~l~l~-n~~~~~~p~~~~~~~~~ 634 (664)
.+.|.+++|.|.+ ++.+..|-+|..+++++|++..+.+. +.++|.|+.+.|. |++. .+|..-...+..
T Consensus 354 IKtL~La~N~iE~-----LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vdYRTKVLa~ 424 (490)
T KOG1259|consen 354 IKTLKLAQNKIET-----LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVDYRTKVLAR 424 (490)
T ss_pred EeeeehhhhhHhh-----hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccchHHHHHHHH
Confidence 8888888887654 56677788888888999998887653 3558889988888 7777 555544444443
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.61 E-value=1.8e-08 Score=109.46 Aligned_cols=250 Identities=21% Similarity=0.209 Sum_probs=127.7
Q ss_pred CcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCC-CCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCC
Q 006015 202 KEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFG-IDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGL 280 (664)
Q Consensus 202 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (664)
...+...+-++.+.. .+ .-..+++|++|-+..+.. ......+.|.. +|.|+.||+++|..... +|..++.+-+|
T Consensus 523 ~~~rr~s~~~~~~~~-~~-~~~~~~~L~tLll~~n~~~l~~is~~ff~~-m~~LrVLDLs~~~~l~~--LP~~I~~Li~L 597 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IA-GSSENPKLRTLLLQRNSDWLLEISGEFFRS-LPLLRVLDLSGNSSLSK--LPSSIGELVHL 597 (889)
T ss_pred hheeEEEEeccchhh-cc-CCCCCCccceEEEeecchhhhhcCHHHHhh-CcceEEEECCCCCccCc--CChHHhhhhhh
Confidence 445555555543321 11 112345677777777642 22233333444 88888888887654443 67777888888
Q ss_pred cEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEe
Q 006015 281 QQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLD 360 (664)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 360 (664)
+.|+++++ .+. .+|..+.+++.|.+|++..+......+ .+...+.+|++|.+.......+......+.++.+|+.+.
T Consensus 598 ryL~L~~t-~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 598 RYLDLSDT-GIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hcccccCC-Ccc-ccchHHHHHHhhheecccccccccccc-chhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 88888877 443 678888888888888888764322222 222257788888877654222223333345555555555
Q ss_pred cCCCCCCChHHHHHHHhcCCCCc----EEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhc-----c-CC
Q 006015 361 ITCCRKISDVSITHVTSSCTGLT----SLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSIS-----R-CS 430 (664)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~-~~ 430 (664)
...... .....+ .....|. .+.+.++... .....+. .+.+|+.|.+.++.+.+....... . ++
T Consensus 675 ~~~~s~---~~~e~l-~~~~~L~~~~~~l~~~~~~~~--~~~~~~~-~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~ 747 (889)
T KOG4658|consen 675 ITISSV---LLLEDL-LGMTRLRSLLQSLSIEGCSKR--TLISSLG-SLGNLEELSILDCGISEIVIEWEESLIVLLCFP 747 (889)
T ss_pred eecchh---HhHhhh-hhhHHHHHHhHhhhhcccccc--eeecccc-cccCcceEEEEcCCCchhhcccccccchhhhHH
Confidence 543221 111111 1122221 2222222211 1111122 566777777777665543221111 1 23
Q ss_pred CccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCC
Q 006015 431 KLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGI 469 (664)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 469 (664)
++..+.+.+|....+..... ..|+|+.|.+..|..+
T Consensus 748 ~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~l~~~~~~ 783 (889)
T KOG4658|consen 748 NLSKVSILNCHMLRDLTWLL---FAPHLTSLSLVSCRLL 783 (889)
T ss_pred HHHHHHhhccccccccchhh---ccCcccEEEEeccccc
Confidence 44444444443333322222 2366777777666644
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.58 E-value=1.4e-07 Score=99.89 Aligned_cols=162 Identities=18% Similarity=0.123 Sum_probs=115.6
Q ss_pred CCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcc
Q 006015 150 KNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLE 229 (664)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~ 229 (664)
.+|++|++++...+.......+...+|.|++|.+.+-.... .....++.++|+|..||++++++++. ..++++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 78999999998877777778888889999999999863333 33555667999999999999988854 7788999999
Q ss_pred eEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEE
Q 006015 230 DLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIK 309 (664)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 309 (664)
.|.+.+-.+.....+..+.. +++|+.||+|.........+. ....+.-..+|+|+.|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii---------------------~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFN-LKKLRVLDISRDKNNDDTKII---------------------EQYLECGMVLPELRFLD 256 (699)
T ss_pred HHhccCCCCCchhhHHHHhc-ccCCCeeeccccccccchHHH---------------------HHHHHhcccCccccEEe
Confidence 99999877777666777787 999999999875543322111 11122223356677777
Q ss_pred ecCCccCHhHHHHHHhcCCCccEEEcC
Q 006015 310 LDGSVVTRAGLKAIGDWCVSLKELSLS 336 (664)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~ 336 (664)
.+++.+.....+.+.+.-|+|+.+..-
T Consensus 257 cSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 257 CSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 777666666666655444555555433
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.49 E-value=6.9e-08 Score=104.98 Aligned_cols=130 Identities=19% Similarity=0.183 Sum_probs=67.2
Q ss_pred CCCcceEeccccCC-cChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCC
Q 006015 175 CKNLKLISLKWCLG-VGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKS 253 (664)
Q Consensus 175 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 253 (664)
+++|++|-+.++.. +...+..+| ..++.|+.|++++|.-.+..|..++.+-+|++|+++++... ..| ..+.+ +..
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff-~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP-~~l~~-Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFF-RSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLP-SGLGN-LKK 619 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHH-hhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccc-hHHHH-HHh
Confidence 56666666666532 333333333 46677777777766444466667777777777776664432 221 23444 666
Q ss_pred CCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCC-CCcHhHHHHhhcCCCccEEEe
Q 006015 254 LKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGS-PVTLSIANGLKKLSMLQSIKL 310 (664)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l 310 (664)
|.+|++..+..... ++.....+++|+.|.+.... ..+......+..+.+|+.+..
T Consensus 620 L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 620 LIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 66666665443222 23344445666666654431 122223333344444444444
No 45
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.47 E-value=3.9e-08 Score=65.16 Aligned_cols=40 Identities=30% Similarity=0.278 Sum_probs=34.2
Q ss_pred ccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhh
Q 006015 12 LFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHR 53 (664)
Q Consensus 12 ~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~ 53 (664)
+|.+||+|++.+||+ |++ ..++.+++.|||+|+.++....
T Consensus 2 ~~~~LP~~il~~Il~-~l~-~~~~~~l~~vsk~~~~~~~~~~ 41 (48)
T PF00646_consen 2 PLSDLPDEILQEILS-YLD-PKDLLRLSLVSKRWRSLVDSPR 41 (48)
T ss_dssp HHHHS-HHHHHHHHH-TS--HHHHHHHCTT-HHHHHHHTTHH
T ss_pred CHHHCCHHHHHHHHH-HCc-HHHHHHHHHHhhHHHHHHcCCC
Confidence 578999999999999 999 9999999999999999988654
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=3.8e-07 Score=81.99 Aligned_cols=213 Identities=16% Similarity=0.176 Sum_probs=130.6
Q ss_pred CCccEEEecCCccCHhH-HHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 006015 303 SMLQSIKLDGSVVTRAG-LKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTG 381 (664)
Q Consensus 303 ~~L~~L~l~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (664)
..++-+.+.++.+...+ ...++..+..++.+++.++....+..+..++.++|.|+.|+++.|+.-.+... ......+
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~n 122 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKN 122 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Ccccccc
Confidence 45667777777764433 44566677899999999988556667888889999999999998875433211 1123568
Q ss_pred CcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhh--HHhhcc-CCCccEEcccCCCCCChHhHHHHhhCCCCC
Q 006015 382 LTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEG--LKSISR-CSKLSVLKLGICLNITGEGLAHVGMCCSKL 458 (664)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~-~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 458 (664)
|+.|.+.+ ..++......+...+|.+++|.++.|.+...- ...... .+.+++|.+..|...--.....+.+.+|++
T Consensus 123 l~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 123 LRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred eEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 88888887 44556666666668888888888876321100 011111 235555655555111111223344456777
Q ss_pred cEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCH-HHHHhhhcCCCCCEEEccCCCCC
Q 006015 459 KELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITD-SSLLSLSKCSRLNTFESRGCPLI 520 (664)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~l 520 (664)
..+-+..|+ +.+..-......+|.+.-|+++.+. +.+ .....+..++.|..|.+.++|..
T Consensus 202 ~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 202 NSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hheeeecCc-ccchhhcccCCCCCcchhhhhcccc-cccHHHHHHHcCCchhheeeccCCccc
Confidence 777777776 4434444444455666666666665 443 34555666777777777776543
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=2e-08 Score=100.97 Aligned_cols=129 Identities=18% Similarity=0.178 Sum_probs=77.5
Q ss_pred CccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCC
Q 006015 431 KLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLN 510 (664)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~ 510 (664)
.|...+.++| .+.. +..-.+-++.|+.|++++|+ +++ +. .+..|+.|++|+|++|. +....--....|. |.
T Consensus 165 ~L~~a~fsyN-~L~~--mD~SLqll~ale~LnLshNk-~~~--v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYN-RLVL--MDESLQLLPALESLNLSHNK-FTK--VD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQ 235 (1096)
T ss_pred hHhhhhcchh-hHHh--HHHHHHHHHHhhhhccchhh-hhh--hH-HHHhcccccccccccch-hccccccchhhhh-he
Confidence 5666666666 5543 22222245778888888887 442 22 44567888888888876 6544333333455 78
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCCh
Q 006015 511 TFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTD 573 (664)
Q Consensus 511 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 573 (664)
.|.++|| .++. + ..+.++.+|+.||+++| .+.+-........+..|+.|+|.+|++--
T Consensus 236 ~L~lrnN-~l~t--L-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 236 LLNLRNN-ALTT--L-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred eeeeccc-HHHh--h-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8888887 3333 2 23346778888888887 44433333222335777888888887643
No 48
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.32 E-value=5.4e-07 Score=57.40 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=33.2
Q ss_pred ccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhh
Q 006015 16 LSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHR 53 (664)
Q Consensus 16 LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~ 53 (664)
||+|++..||+ |++ ..|+.+++.|||+|+.++....
T Consensus 1 lP~~ll~~I~~-~l~-~~d~~~~~~vc~~~~~~~~~~~ 36 (41)
T smart00256 1 LPDEILEEILS-KLP-PKDLLRLRKVSRRWRSLIDSHD 36 (41)
T ss_pred CCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhcChh
Confidence 79999999999 999 9999999999999999987543
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.16 E-value=1.4e-06 Score=88.75 Aligned_cols=201 Identities=22% Similarity=0.226 Sum_probs=127.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccC-CCccEEcccCCCCCChHhHHHHhhCCCCCcEEE
Q 006015 384 SLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRC-SKLSVLKLGICLNITGEGLAHVGMCCSKLKELD 462 (664)
Q Consensus 384 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 462 (664)
.+....+....+ ...+. ..+.++.+++.++.+.+. +...... ++|+.|+++++ .+.... ..+. .+++|+.|+
T Consensus 97 ~l~~~~~~~~~~--~~~~~-~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N-~i~~l~-~~~~-~l~~L~~L~ 169 (394)
T COG4886 97 SLDLNLNRLRSN--ISELL-ELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDN-KIESLP-SPLR-NLPNLKNLD 169 (394)
T ss_pred eeeccccccccC--chhhh-cccceeEEecCCcccccC-ccccccchhhccccccccc-chhhhh-hhhh-ccccccccc
Confidence 566666544121 11222 457788888888877763 2333344 38899999888 776631 2333 788999999
Q ss_pred cCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccC
Q 006015 463 LYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKW 542 (664)
Q Consensus 463 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 542 (664)
+++|+ ++ .++......+.|+.|++++|. +.+.... ......|+++.+++|+.+. ....+.+++++..+.+.+
T Consensus 170 l~~N~-l~--~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~~---~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 170 LSFND-LS--DLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNSIIE---LLSSLSNLKNLSGLELSN 241 (394)
T ss_pred cCCch-hh--hhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCccee---cchhhhhcccccccccCC
Confidence 99887 54 344444356888889998887 6543322 2344458888888884332 344556777888888777
Q ss_pred ccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh
Q 006015 543 CHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA 607 (664)
Q Consensus 543 ~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~ 607 (664)
|+. .+. ......+++++.|++++|.+++.. .+..+.+++.+++++|.+...++....
T Consensus 242 n~~-~~~--~~~~~~l~~l~~L~~s~n~i~~i~-----~~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 242 NKL-EDL--PESIGNLSNLETLDLSNNQISSIS-----SLGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred cee-eec--cchhccccccceeccccccccccc-----cccccCccCEEeccCccccccchhhhc
Confidence 743 221 222233677888888888887733 256667777888888887766554433
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.12 E-value=2.8e-07 Score=92.99 Aligned_cols=108 Identities=22% Similarity=0.334 Sum_probs=52.0
Q ss_pred HhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHH-hcCCcCcEEeccCccccChhhHHHHHh
Q 006015 478 ACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIA-VGCKQLIKLDIKWCHNINDVGMLPLAH 556 (664)
Q Consensus 478 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~~L~~L~l~~~~~i~~~~~~~~~~ 556 (664)
++-++.|+.|+|++|+ +++.. .+..|+.|+.|+|+.| .++. ++..- ..| .|..|.+++|...+ .-...
T Consensus 183 Lqll~ale~LnLshNk-~~~v~--~Lr~l~~LkhLDlsyN-~L~~--vp~l~~~gc-~L~~L~lrnN~l~t----L~gie 251 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNK-FTKVD--NLRRLPKLKHLDLSYN-CLRH--VPQLSMVGC-KLQLLNLRNNALTT----LRGIE 251 (1096)
T ss_pred HHHHHHhhhhccchhh-hhhhH--HHHhcccccccccccc-hhcc--ccccchhhh-hheeeeecccHHHh----hhhHH
Confidence 3344666666666665 55333 5556666666666666 3333 22111 122 26666666663211 11122
Q ss_pred cCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCH
Q 006015 557 FSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSL 598 (664)
Q Consensus 557 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~ 598 (664)
++.+|+.||+++|-+.+.. .+..+..|-.|..+++.||-+
T Consensus 252 ~LksL~~LDlsyNll~~hs--eL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHS--ELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhhhccchhHhhhhcch--hhhHHHHHHHHHHHhhcCCcc
Confidence 2455666666666544311 223344444455555555544
No 51
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=3.9e-06 Score=71.48 Aligned_cols=85 Identities=27% Similarity=0.409 Sum_probs=54.5
Q ss_pred CCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCE
Q 006015 407 FLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEM 486 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (664)
.++.++-+++.|..++.+.+.+++.++.|.+.+|..+.+.++..+....++|+.|++++|+.||+.++.-+ ..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHH
Confidence 35566666666666666666667777777777776667766666665566666666666666666655543 33566666
Q ss_pred EeccCC
Q 006015 487 INIAYL 492 (664)
Q Consensus 487 L~l~~~ 492 (664)
|.|.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 666553
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.00 E-value=3.5e-06 Score=85.84 Aligned_cols=154 Identities=24% Similarity=0.217 Sum_probs=82.3
Q ss_pred CCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCE
Q 006015 407 FLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEM 486 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (664)
+|+.|+++++.+... +..+..+++|+.|++++| .+++.... ....++|+.|+++++. ++ .++........|++
T Consensus 141 nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N-~l~~l~~~--~~~~~~L~~L~ls~N~-i~--~l~~~~~~~~~L~~ 213 (394)
T COG4886 141 NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN-DLSDLPKL--LSNLSNLNNLDLSGNK-IS--DLPPEIELLSALEE 213 (394)
T ss_pred hcccccccccchhhh-hhhhhccccccccccCCc-hhhhhhhh--hhhhhhhhheeccCCc-cc--cCchhhhhhhhhhh
Confidence 566666666555442 134555666666666666 55553221 1135666666666665 43 22222223344666
Q ss_pred EeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeee
Q 006015 487 INIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINL 566 (664)
Q Consensus 487 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l 566 (664)
+.+++|..+. .+..+.++.++..+.+.+++ +.. ++..+..+++++.|++++| .+++... .....+++.|++
T Consensus 214 l~~~~N~~~~--~~~~~~~~~~l~~l~l~~n~-~~~--~~~~~~~l~~l~~L~~s~n-~i~~i~~---~~~~~~l~~L~~ 284 (394)
T COG4886 214 LDLSNNSIIE--LLSSLSNLKNLSGLELSNNK-LED--LPESIGNLSNLETLDLSNN-QISSISS---LGSLTNLRELDL 284 (394)
T ss_pred hhhcCCccee--cchhhhhcccccccccCCce-eee--ccchhccccccceeccccc-ccccccc---ccccCccCEEec
Confidence 6676664122 33445556666666666663 222 2344556666777777777 3333322 233567777777
Q ss_pred ccCCCChhHH
Q 006015 567 SYTSVTDVGL 576 (664)
Q Consensus 567 ~~n~l~~~~~ 576 (664)
++|.++...+
T Consensus 285 s~n~~~~~~~ 294 (394)
T COG4886 285 SGNSLSNALP 294 (394)
T ss_pred cCccccccch
Confidence 7776665443
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.96 E-value=2.2e-06 Score=60.16 Aligned_cols=60 Identities=28% Similarity=0.278 Sum_probs=39.2
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCV 467 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 467 (664)
|+|++|++++|++.......|..+++|+.|++++| .++......+. .+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~-~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFS-NLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTT-TSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHc-CCCCCCEEeCcCCc
Confidence 45677777777776666666667777777777777 66654443333 66777777776664
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.94 E-value=3.4e-06 Score=59.16 Aligned_cols=60 Identities=20% Similarity=0.153 Sum_probs=42.1
Q ss_pred CCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCC
Q 006015 176 KNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCF 237 (664)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 237 (664)
|+|++|++++| .+..++...+ ..+++|++|++++|.+....+..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f-~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF-SNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT-TTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCC-CCCccCHHHH-cCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 46677777776 5555555444 467788888888877776666677778888888777764
No 55
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=8.7e-06 Score=69.43 Aligned_cols=89 Identities=24% Similarity=0.307 Sum_probs=67.9
Q ss_pred CccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCC
Q 006015 431 KLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLN 510 (664)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~ 510 (664)
.++.++-+++ .|..++++.+. .++.++.|.+.+|..+.|.++..+-.-.++|+.|+|++|+.||+.....+..+++|+
T Consensus 102 ~IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4667777777 77777787777 778888888888888877777777666778888888888878877777777777777
Q ss_pred EEEccCCCCCC
Q 006015 511 TFESRGCPLIT 521 (664)
Q Consensus 511 ~L~l~~~~~l~ 521 (664)
.|.+.+-+.+.
T Consensus 180 ~L~l~~l~~v~ 190 (221)
T KOG3864|consen 180 RLHLYDLPYVA 190 (221)
T ss_pred HHHhcCchhhh
Confidence 77777765443
No 56
>PLN03150 hypothetical protein; Provisional
Probab=97.80 E-value=3.5e-05 Score=82.41 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=67.3
Q ss_pred ccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCE
Q 006015 432 LSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNT 511 (664)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~ 511 (664)
++.|+|+++ .+.......+. .+++|+.|++++|. ++ ..++..+..+++|+.|++++|. +++..+..+.++++|+.
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~-~L~~L~~L~Ls~N~-l~-g~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDIS-KLRHLQSINLSGNS-IR-GNIPPSLGSITSLEVLDLSYNS-FNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCC-CccccCCHHHh-CCCCCCEEECCCCc-cc-CcCChHHhCCCCCCEEECCCCC-CCCCCchHHhcCCCCCE
Confidence 566677766 66555455555 66777777777765 43 2344455667777777777776 66666677777777777
Q ss_pred EEccCCCCCCHHHHHHHHhc-CCcCcEEeccCccc
Q 006015 512 FESRGCPLITSLGLAAIAVG-CKQLIKLDIKWCHN 545 (664)
Q Consensus 512 L~l~~~~~l~~~~~~~~~~~-~~~L~~L~l~~~~~ 545 (664)
|++++| .++.. ++..+.. ..++..+++.+|+.
T Consensus 495 L~Ls~N-~l~g~-iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 495 LNLNGN-SLSGR-VPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred EECcCC-ccccc-CChHHhhccccCceEEecCCcc
Confidence 777777 34332 4444433 23566777777753
No 57
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.77 E-value=2.5e-06 Score=86.87 Aligned_cols=175 Identities=25% Similarity=0.275 Sum_probs=106.1
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+.+|+.+++.++.+..... .+..+++|++|++++| .|++. ..+. .++.|+.|++++|. +++ + ..+..+++
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N-~I~~i--~~l~-~l~~L~~L~l~~N~-i~~--~-~~~~~l~~ 163 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFN-KITKL--EGLS-TLTLLKELNLSGNL-ISD--I-SGLESLKS 163 (414)
T ss_pred cccceeeeeccccchhhccc-chhhhhcchheecccc-ccccc--cchh-hccchhhheeccCc-chh--c-cCCccchh
Confidence 56788888888887765321 1566788888888888 77763 3333 45668888888887 432 1 12233677
Q ss_pred CCEEeccCCCCCCHHHH-HhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCc--c
Q 006015 484 LEMINIAYLKDITDSSL-LSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQ--N 560 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~--~ 560 (664)
|+.+++++|. +..... . +..+.+++.+.+.+|...... .+..+..+..+++.+|......+... .. .
T Consensus 164 L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~----~~~~~~~l~~~~l~~n~i~~~~~l~~----~~~~~ 233 (414)
T KOG0531|consen 164 LKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIREIE----GLDLLKKLVLLSLLDNKISKLEGLNE----LVMLH 233 (414)
T ss_pred hhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchhccc----chHHHHHHHHhhcccccceeccCccc----chhHH
Confidence 8888888877 654443 2 567778888888887432221 12223334444666663211111111 12 3
Q ss_pred cCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHH
Q 006015 561 LRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGL 601 (664)
Q Consensus 561 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~ 601 (664)
|+.+++++|++.... ..++.+..+..+++.+|.+..+
T Consensus 234 L~~l~l~~n~i~~~~----~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 234 LRELYLSGNRISRSP----EGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred HHHHhcccCcccccc----ccccccccccccchhhcccccc
Confidence 788888888876531 3355566666777877777654
No 58
>PLN03150 hypothetical protein; Provisional
Probab=97.72 E-value=6.5e-05 Score=80.33 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=62.9
Q ss_pred cceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccE
Q 006015 228 LEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQS 307 (664)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 307 (664)
++.|++.++...+..+. .+.. +++|+.|++++|..... ++..+..+++|+.|++++| .+.+..|..+..+++|+.
T Consensus 420 v~~L~L~~n~L~g~ip~-~i~~-L~~L~~L~Ls~N~l~g~--iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPN-DISK-LRHLQSINLSGNSIRGN--IPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCH-HHhC-CCCCCEEECCCCcccCc--CChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCE
Confidence 44555555444332221 3444 56666666665543222 3444556666666666666 566666777777778888
Q ss_pred EEecCCccCHhHHHHHHhcCCCccEEEcCCCC
Q 006015 308 IKLDGSVVTRAGLKAIGDWCVSLKELSLSKCD 339 (664)
Q Consensus 308 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (664)
|++++|.+....+..+.....++..+++.+|.
T Consensus 495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECcCCcccccCChHHhhccccCceEEecCCc
Confidence 88887777766666665333455666666654
No 59
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.56 E-value=2.2e-06 Score=84.39 Aligned_cols=150 Identities=19% Similarity=0.169 Sum_probs=67.8
Q ss_pred CCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCC
Q 006015 405 CRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDL 484 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (664)
|..|+.+.+..|.+-. .+..+.++..|+.++|+.| ++... +..++ .--|+.|.+++|+ ++ .++.-+...+.|
T Consensus 97 f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~N-qlS~l-p~~lC--~lpLkvli~sNNk-l~--~lp~~ig~~~tl 168 (722)
T KOG0532|consen 97 FVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSN-QLSHL-PDGLC--DLPLKVLIVSNNK-LT--SLPEEIGLLPTL 168 (722)
T ss_pred HHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccc-hhhcC-Chhhh--cCcceeEEEecCc-cc--cCCcccccchhH
Confidence 3345555555544433 3455556666666666666 55442 22222 1235556665554 32 222222234555
Q ss_pred CEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHh-cCcccCe
Q 006015 485 EMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAH-FSQNLRQ 563 (664)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~-~~~~L~~ 563 (664)
..|+.+.|. +.. .+..+..+.+|+.|.+..| .+.. ++..+. .-.|.+||++.|+ +..+|... .+..|++
T Consensus 169 ~~ld~s~ne-i~s-lpsql~~l~slr~l~vrRn-~l~~--lp~El~-~LpLi~lDfScNk----is~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 169 AHLDVSKNE-IQS-LPSQLGYLTSLRDLNVRRN-HLED--LPEELC-SLPLIRLDFSCNK----ISYLPVDFRKMRHLQV 238 (722)
T ss_pred HHhhhhhhh-hhh-chHHhhhHHHHHHHHHhhh-hhhh--CCHHHh-CCceeeeecccCc----eeecchhhhhhhhhee
Confidence 555555554 221 2334444555555555555 2222 222222 2244555555542 22233222 2455555
Q ss_pred eeeccCCCC
Q 006015 564 INLSYTSVT 572 (664)
Q Consensus 564 L~l~~n~l~ 572 (664)
|.|.+|++.
T Consensus 239 l~LenNPLq 247 (722)
T KOG0532|consen 239 LQLENNPLQ 247 (722)
T ss_pred eeeccCCCC
Confidence 555555544
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.52 E-value=3.8e-05 Score=61.06 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=43.7
Q ss_pred HHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh
Q 006015 528 IAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA 607 (664)
Q Consensus 528 ~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~ 607 (664)
.+.....|..+++++|.. .+.. ..+....+.+..|++++|+|.+ .|+.++.++.|+ .++++.|.+...|..++.
T Consensus 48 ~l~~~~el~~i~ls~N~f-k~fp-~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr---~lNl~~N~l~~~p~vi~~ 121 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGF-KKFP-KKFTIKFPTATTLNLANNEISD-VPEELAAMPALR---SLNLRFNPLNAEPRVIAP 121 (177)
T ss_pred HHhCCceEEEEecccchh-hhCC-HHHhhccchhhhhhcchhhhhh-chHHHhhhHHhh---hcccccCccccchHHHHH
Confidence 333444555555555521 1111 1122223455566666666554 344444444443 444555666555555555
Q ss_pred CCcccceeee-hhhcccCCh
Q 006015 608 CGGITKVKLQ-AAFKQLLPQ 626 (664)
Q Consensus 608 ~~~L~~l~l~-n~~~~~~p~ 626 (664)
+-+|-+|+.. |... .+|.
T Consensus 122 L~~l~~Lds~~na~~-eid~ 140 (177)
T KOG4579|consen 122 LIKLDMLDSPENARA-EIDV 140 (177)
T ss_pred HHhHHHhcCCCCccc-cCcH
Confidence 5555555555 3333 4443
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.39 E-value=2e-05 Score=70.37 Aligned_cols=86 Identities=23% Similarity=0.281 Sum_probs=36.4
Q ss_pred CCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcc
Q 006015 481 CPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQN 560 (664)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 560 (664)
...|+.|.+.++. ++ ....+..+|+|+.|.++.|..-...++......+|+|++|++++| .+.+...+.-...+.+
T Consensus 42 ~~~le~ls~~n~g-lt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVG-LT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccc-ee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcc
Confidence 3445555555543 22 222333445555555555521112223333444455555555555 3333222222222444
Q ss_pred cCeeeeccCC
Q 006015 561 LRQINLSYTS 570 (664)
Q Consensus 561 L~~L~l~~n~ 570 (664)
|..|++.+|.
T Consensus 118 L~~Ldl~n~~ 127 (260)
T KOG2739|consen 118 LKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCC
Confidence 5555555554
No 62
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.37 E-value=3.1e-05 Score=78.69 Aligned_cols=189 Identities=25% Similarity=0.333 Sum_probs=91.1
Q ss_pred CcEEEcCCCCCCCHHHHHHHH---hhCCCCCEEEccCCCCChhhHHhhcc----C-CCccEEcccCCCCCChHhHHHHhh
Q 006015 382 LTSLRMESCTLVPREAFVLIG---QRCRFLEELDLTDNEIDDEGLKSISR----C-SKLSVLKLGICLNITGEGLAHVGM 453 (664)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~l~~----~-~~L~~L~l~~~~~l~~~~~~~l~~ 453 (664)
+.++.+.+|..- +.+...++ ...+.|+.|+++++.+.+.+...+.+ . +.++.|++..| .+++.+...+..
T Consensus 89 l~~L~L~~~~l~-~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANNRLG-DRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhCccc-cchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHH
Confidence 555666655432 22333222 24566777777777776655554443 1 35566666666 666555443322
Q ss_pred ---CCCCCcEEEcCCCCCCChHHHHHHH---h----cCCCCCEEeccCCCCCCHHHHHh----hhcCCC-CCEEEccCCC
Q 006015 454 ---CCSKLKELDLYRCVGITDSGILTIA---C----GCPDLEMINIAYLKDITDSSLLS----LSKCSR-LNTFESRGCP 518 (664)
Q Consensus 454 ---~~~~L~~L~l~~~~~~~~~~~~~~~---~----~~~~L~~L~l~~~~~l~~~~~~~----l~~~~~-L~~L~l~~~~ 518 (664)
....++.++++.|... ..+..... . ...++++|++++|. ++...... +...+. +..+++.+|
T Consensus 167 ~L~~~~~l~~l~l~~n~l~-~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n- 243 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLI-ELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASN- 243 (478)
T ss_pred HHhcccchhHHHHHhcccc-hhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhc-
Confidence 2456666666666632 22322211 1 13346666666665 44332222 222333 444555555
Q ss_pred CCCHHHHHHHH---hcC-CcCcEEeccCccccChhhHHHHHh---cCcccCeeeeccCCCChhHH
Q 006015 519 LITSLGLAAIA---VGC-KQLIKLDIKWCHNINDVGMLPLAH---FSQNLRQINLSYTSVTDVGL 576 (664)
Q Consensus 519 ~l~~~~~~~~~---~~~-~~L~~L~l~~~~~i~~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~ 576 (664)
.+.+.+..... ..+ +.++.++++.| .+++.+...... .++.++.+.+++|.+++...
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 44443332222 222 34455666666 444444443332 24555566666665555444
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=4.1e-05 Score=68.65 Aligned_cols=102 Identities=19% Similarity=0.126 Sum_probs=76.7
Q ss_pred CCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHH-HHHhhhcCC
Q 006015 429 CSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDS-SLLSLSKCS 507 (664)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~ 507 (664)
+.+.++|+.++| .++|..+ +..+|.|+.|.|+-|+ |+ .+ +-+..|++|++|+|..|. |.+. .+.++.++|
T Consensus 18 l~~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvNk-Is--sL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVNK-IS--SL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCC-CccHHHH---HHhcccceeEEeeccc-cc--cc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCc
Confidence 457789999999 8988543 4478999999999887 54 22 334678999999999987 6653 467888999
Q ss_pred CCCEEEccCCCCCCHHHH---HHHHhcCCcCcEEe
Q 006015 508 RLNTFESRGCPLITSLGL---AAIAVGCKQLIKLD 539 (664)
Q Consensus 508 ~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~ 539 (664)
+|+.|.|..||.....|- ...+.-+|+|++||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999998876654332 23456688888876
No 64
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.31 E-value=0.00011 Score=74.98 Aligned_cols=130 Identities=25% Similarity=0.273 Sum_probs=60.9
Q ss_pred CCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHh-hhcCCCCCEEEccCCCCCCHHHHHHHHhcCC
Q 006015 455 CSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLS-LSKCSRLNTFESRGCPLITSLGLAAIAVGCK 533 (664)
Q Consensus 455 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 533 (664)
+..++.+.+..+. +.. +...+..+.+|+.|++.+|. +.. ... +..+++|+.|++++| .|+.. ..+..++
T Consensus 71 l~~l~~l~l~~n~-i~~--~~~~l~~~~~l~~l~l~~n~-i~~--i~~~l~~~~~L~~L~ls~N-~I~~i---~~l~~l~ 140 (414)
T KOG0531|consen 71 LTSLKELNLRQNL-IAK--ILNHLSKLKSLEALDLYDNK-IEK--IENLLSSLVNLQVLDLSFN-KITKL---EGLSTLT 140 (414)
T ss_pred hHhHHhhccchhh-hhh--hhcccccccceeeeeccccc-hhh--cccchhhhhcchheecccc-ccccc---cchhhcc
Confidence 3444445554443 221 12223345666666666655 432 222 445666666666666 44331 1122444
Q ss_pred cCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHH
Q 006015 534 QLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGL 601 (664)
Q Consensus 534 ~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~ 601 (664)
.|+.|++.+|+ |+. +.....+++|+.+++++|.+...... . ...+..++.+++.+|.+..+
T Consensus 141 ~L~~L~l~~N~-i~~---~~~~~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 141 LLKELNLSGNL-ISD---ISGLESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred chhhheeccCc-chh---ccCCccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCchhcc
Confidence 56666666662 222 11111245666666666665553321 0 23344444555556555544
No 65
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.27 E-value=7.9e-06 Score=80.56 Aligned_cols=188 Identities=18% Similarity=0.136 Sum_probs=125.7
Q ss_pred CEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEe
Q 006015 409 EELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMIN 488 (664)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 488 (664)
...+++.|++.. .+.....+..|+.+.+..| .+... +..++ .+..|..++++.|. ++ .++.-+..|| |+.|-
T Consensus 78 ~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n-~~r~i-p~~i~-~L~~lt~l~ls~Nq-lS--~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 78 VFADLSRNRFSE-LPEEACAFVSLESLILYHN-CIRTI-PEAIC-NLEALTFLDLSSNQ-LS--HLPDGLCDLP-LKVLI 149 (722)
T ss_pred hhhhcccccccc-CchHHHHHHHHHHHHHHhc-cceec-chhhh-hhhHHHHhhhccch-hh--cCChhhhcCc-ceeEE
Confidence 345566666554 3445555667777777777 55543 34444 67788888888876 43 3333334444 88999
Q ss_pred ccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeecc
Q 006015 489 IAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSY 568 (664)
Q Consensus 489 l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~ 568 (664)
+++|+ ++. .++.++..++|..|+.+.| .+.. ++..+.++.+|+.|.++.|+. ...|-....-.|..||++.
T Consensus 150 ~sNNk-l~~-lp~~ig~~~tl~~ld~s~n-ei~s--lpsql~~l~slr~l~vrRn~l----~~lp~El~~LpLi~lDfSc 220 (722)
T KOG0532|consen 150 VSNNK-LTS-LPEEIGLLPTLAHLDVSKN-EIQS--LPSQLGYLTSLRDLNVRRNHL----EDLPEELCSLPLIRLDFSC 220 (722)
T ss_pred EecCc-ccc-CCcccccchhHHHhhhhhh-hhhh--chHHhhhHHHHHHHHHhhhhh----hhCCHHHhCCceeeeeccc
Confidence 99987 553 4455667788999999998 4433 677778888999999999853 1122111246788899999
Q ss_pred CCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh---CCcccceeee
Q 006015 569 TSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA---CGGITKVKLQ 617 (664)
Q Consensus 569 n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~---~~~L~~l~l~ 617 (664)
|+++. +|.. +..+++|+++-+.+|-++.-|+.++- ..-.+.|+.+
T Consensus 221 Nkis~-iPv~---fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 221 NKISY-LPVD---FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred Cceee-cchh---hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence 99876 5555 45566667888889999888888754 3344666655
No 66
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00017 Score=61.71 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=4.9
Q ss_pred CCCCcEEEcCCC
Q 006015 455 CSKLKELDLYRC 466 (664)
Q Consensus 455 ~~~L~~L~l~~~ 466 (664)
++.|..|.+..|
T Consensus 63 l~rL~tLll~nN 74 (233)
T KOG1644|consen 63 LPRLHTLLLNNN 74 (233)
T ss_pred ccccceEEecCC
Confidence 334444444433
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.24 E-value=0.00015 Score=73.78 Aligned_cols=316 Identities=24% Similarity=0.320 Sum_probs=150.9
Q ss_pred CcEeecCCCCCCcH----hHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCC----CccEEEcCCCCCCCchh---HHH
Q 006015 280 LQQLTLAHGSPVTL----SIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCV----SLKELSLSKCDGVTDEG---LSY 348 (664)
Q Consensus 280 L~~L~l~~~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~~~~~---~~~ 348 (664)
+..+.+.+| .+.+ .+...+...+.|+.|+++++.+.+.....+.+.++ .++.|.+..|. ++..+ +..
T Consensus 89 l~~L~L~~~-~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~-l~~~g~~~l~~ 166 (478)
T KOG4308|consen 89 LLHLSLANN-RLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCS-LTSEGAAPLAA 166 (478)
T ss_pred HHHhhhhhC-ccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccc-ccccchHHHHH
Confidence 555566555 3332 34455566677778888888777666666554333 34455555554 33222 222
Q ss_pred HHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHH----
Q 006015 349 VATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLK---- 424 (664)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---- 424 (664)
.+.....++.++++.|..... ...... ..+..-+....++++|++.++.++.....
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~-g~~~l~-------------------~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~ 226 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIEL-GLLVLS-------------------QALESAASPLSSLETLKLSRCGVTSSSCALLDE 226 (478)
T ss_pred HHhcccchhHHHHHhcccchh-hhHHHh-------------------hhhhhhhcccccHHHHhhhhcCcChHHHHHHHH
Confidence 333345555555555543211 010000 00000011234566666666655543332
Q ss_pred hhccCCC-ccEEcccCCCCCChHhHHHHhhCC----CCCcEEEcCCCCCCChHH---HHHHHhcCCCCCEEeccCCCCCC
Q 006015 425 SISRCSK-LSVLKLGICLNITGEGLAHVGMCC----SKLKELDLYRCVGITDSG---ILTIACGCPDLEMINIAYLKDIT 496 (664)
Q Consensus 425 ~l~~~~~-L~~L~l~~~~~l~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~ 496 (664)
.+...+. +..|++..| .+.+.+...+...+ +.++.+++..|. +++.+ +...+.+|++++.+.+++|+ +.
T Consensus 227 ~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~ 303 (478)
T KOG4308|consen 227 VLASGESLLRELDLASN-KLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNP-LT 303 (478)
T ss_pred HHhccchhhHHHHHHhc-CcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCc-cc
Confidence 2223333 555777777 77766655554333 345777777776 44433 44555567777777777777 55
Q ss_pred HHHHHhhh----cCCCCCEEEccCCCCCCHHH---HHHHHhcCCcCcEEeccCccccChhhHHHHHhc----CcccCeee
Q 006015 497 DSSLLSLS----KCSRLNTFESRGCPLITSLG---LAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHF----SQNLRQIN 565 (664)
Q Consensus 497 ~~~~~~l~----~~~~L~~L~l~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~----~~~L~~L~ 565 (664)
+.....+. ....+..+.+.++...+..+ +......-..+....++++ ...+.+....... -+.+..++
T Consensus 304 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 382 (478)
T KOG4308|consen 304 DYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELGISGN-RVGEEGLALLVLAKSNPKSELLRLS 382 (478)
T ss_pred cHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHHhhhc-cchHHHHHHHhhhhcccCcccchhh
Confidence 54443332 23445555555443332211 1111111122223333333 3333333222211 23355566
Q ss_pred eccCCCChhHHHHhh-CCcccccceeeccCCCCHHH-----HHHHHHhCCcccceeee-hhhc
Q 006015 566 LSYTSVTDVGLLSLA-SISCLQNMTILHLKGLSLNG-----LAAALLACGGITKVKLQ-AAFK 621 (664)
Q Consensus 566 l~~n~l~~~~~~~l~-~~~~L~~L~~l~l~~n~~~~-----~~~~~~~~~~L~~l~l~-n~~~ 621 (664)
+..+.+.+.+..+++ .+.+...+.+++++.|.... +.........++.+.++ |...
T Consensus 383 ~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 383 LNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNGSLKALRLSRNPIT 445 (478)
T ss_pred hhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcccchhhhhccChhh
Confidence 666655555544433 24445555566666555432 11222222266777777 5555
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.19 E-value=7.5e-05 Score=66.81 Aligned_cols=85 Identities=24% Similarity=0.230 Sum_probs=44.1
Q ss_pred cCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHH---HHHHh
Q 006015 531 GCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLA---AALLA 607 (664)
Q Consensus 531 ~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~---~~~~~ 607 (664)
.+|+|++|.++.|+.-...++..++..+|+|+++.+++|+|.. +..+..++.+++|..+++.++..+.+. ...|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 4556666666666333334444444455666666666666554 333444555555555555555444321 12233
Q ss_pred -CCcccceeee
Q 006015 608 -CGGITKVKLQ 617 (664)
Q Consensus 608 -~~~L~~l~l~ 617 (664)
+++|+.++-.
T Consensus 141 ll~~L~~LD~~ 151 (260)
T KOG2739|consen 141 LLPSLKYLDGC 151 (260)
T ss_pred Hhhhhcccccc
Confidence 5666655543
No 69
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.09 E-value=0.00017 Score=45.99 Aligned_cols=37 Identities=32% Similarity=0.427 Sum_probs=16.3
Q ss_pred cCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCCh
Q 006015 534 QLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTD 573 (664)
Q Consensus 534 ~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 573 (664)
+|++|++++| .+++.. +....+++|+.|++++|++++
T Consensus 2 ~L~~L~l~~N-~i~~l~--~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLP--PELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSS-S-SSHG--GHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCC-CCcccC--chHhCCCCCCEEEecCCCCCC
Confidence 4555555555 333211 112335555555555555543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.0002 Score=64.35 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=64.8
Q ss_pred CCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCC
Q 006015 176 KNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLK 255 (664)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (664)
.+.+.|++.+| .+.++.+. ..++.|+.|.|+-|.|+. ...+..|++|+.|+|..|.+.....+..+.+ +|+|+
T Consensus 19 ~~vkKLNcwg~-~L~DIsic---~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLkn-lpsLr 91 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISIC---EKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKN-LPSLR 91 (388)
T ss_pred HHhhhhcccCC-CccHHHHH---HhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhc-Cchhh
Confidence 34556666666 45554433 377777777777777663 3456667777777777777666666666666 78888
Q ss_pred EEeccCCCCcChhh---HHHHHhccCCCcEee
Q 006015 256 ALDMSSCQNISHLG---LSSLTSSIGGLQQLT 284 (664)
Q Consensus 256 ~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~ 284 (664)
.|.+..|+.....+ -...+..+|+|++|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88887766544332 223455666666665
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.00 E-value=0.00043 Score=55.28 Aligned_cols=101 Identities=15% Similarity=0.151 Sum_probs=71.0
Q ss_pred cCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccc
Q 006015 534 QLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITK 613 (664)
Q Consensus 534 ~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~ 613 (664)
.+..+++++|+....-...........|..++|++|.+.+ .|..|.. ....++.+++.+|.+..+|.++-.+|.|+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~--kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTI--KFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhh--ccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 5677888899532111111222234678889999999876 4444432 122456889999999999999777999999
Q ss_pred eeee-hhhcccCChhHHHHHHhcceE
Q 006015 614 VKLQ-AAFKQLLPQPLIDHLQARGCV 638 (664)
Q Consensus 614 l~l~-n~~~~~~p~~~~~~~~~~~~~ 638 (664)
|+++ |.+. ..|..+.+...+...+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhc
Confidence 9999 8888 7888877766655444
No 72
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.94 E-value=0.00095 Score=57.29 Aligned_cols=62 Identities=19% Similarity=0.088 Sum_probs=27.3
Q ss_pred cCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCc
Q 006015 480 GCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (664)
+++.|..|.+++|. |+...+..-..+|+|+.|.+.+| .+...+--.-+..||.|++|.+-+|
T Consensus 62 ~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred CccccceEEecCCc-ceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeeecCC
Confidence 34455555555554 44444433334445555555554 3322222222234444455544444
No 73
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.86 E-value=0.0016 Score=41.57 Aligned_cols=38 Identities=37% Similarity=0.478 Sum_probs=21.5
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCCh
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITG 445 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (664)
++|++|++++|++.+. +..++++++|+.|++++| .+++
T Consensus 1 ~~L~~L~l~~N~i~~l-~~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL-PPELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSH-GGHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCCCCccc-CchHhCCCCCCEEEecCC-CCCC
Confidence 3566666666666652 334666666666666666 5554
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.63 E-value=0.0026 Score=62.41 Aligned_cols=80 Identities=21% Similarity=0.222 Sum_probs=52.7
Q ss_pred HhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHH
Q 006015 446 EGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGL 525 (664)
Q Consensus 446 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~ 525 (664)
.....+. .+++++.|++++|. ++ .++. --++|+.|.+++|..++.. +..+ .++|+.|.+++|..+.. +
T Consensus 43 ~a~~r~~-~~~~l~~L~Is~c~-L~--sLP~---LP~sLtsL~Lsnc~nLtsL-P~~L--P~nLe~L~Ls~Cs~L~s--L 110 (426)
T PRK15386 43 EITPQIE-EARASGRLYIKDCD-IE--SLPV---LPNELTEITIENCNNLTTL-PGSI--PEGLEKLTVCHCPEISG--L 110 (426)
T ss_pred HHHHHHH-HhcCCCEEEeCCCC-Cc--ccCC---CCCCCcEEEccCCCCcccC-Cchh--hhhhhheEccCcccccc--c
Confidence 3344433 57999999999995 54 3331 1247999999998866432 2222 35899999999966543 2
Q ss_pred HHHHhcCCcCcEEeccCc
Q 006015 526 AAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 526 ~~~~~~~~~L~~L~l~~~ 543 (664)
+ ++|+.|++.++
T Consensus 111 P------~sLe~L~L~~n 122 (426)
T PRK15386 111 P------ESVRSLEIKGS 122 (426)
T ss_pred c------cccceEEeCCC
Confidence 2 46778887755
No 75
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.61 E-value=0.0038 Score=61.29 Aligned_cols=136 Identities=19% Similarity=0.291 Sum_probs=72.2
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+.+++.|++++|.+... + .+ .++|+.|.+++|..++.. +..+ .++|+.|.+++|..+. .++ ++
T Consensus 50 ~~~~l~~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsL-P~~L---P~nLe~L~Ls~Cs~L~--sLP------~s 113 (426)
T PRK15386 50 EARASGRLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTL-PGSI---PEGLEKLTVCHCPEIS--GLP------ES 113 (426)
T ss_pred HhcCCCEEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccC-Cchh---hhhhhheEccCccccc--ccc------cc
Confidence 568888888888765542 2 11 236888888887565332 2222 2578888888876453 222 45
Q ss_pred CCEEeccCCCCCCHHHHHhhhcC-CCCCEEEccCCCCCCHHHHHHHHhcC-CcCcEEeccCccccChhhHHHHHhcCccc
Q 006015 484 LEMINIAYLKDITDSSLLSLSKC-SRLNTFESRGCPLITSLGLAAIAVGC-KQLIKLDIKWCHNINDVGMLPLAHFSQNL 561 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~~~~~~~~L 561 (664)
|+.|++.++. .. .+..+ ++|+.|.+.++.......++. .+ ++|++|++++|..+. .| .....+|
T Consensus 114 Le~L~L~~n~-~~-----~L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~----LP-~~LP~SL 179 (426)
T PRK15386 114 VRSLEIKGSA-TD-----SIKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII----LP-EKLPESL 179 (426)
T ss_pred cceEEeCCCC-Cc-----ccccCcchHhheecccccccccccccc---ccCCcccEEEecCCCccc----Cc-ccccccC
Confidence 7777776543 22 12333 256666664432111111111 12 467777777775321 11 0113567
Q ss_pred CeeeeccC
Q 006015 562 RQINLSYT 569 (664)
Q Consensus 562 ~~L~l~~n 569 (664)
+.|+++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 77777655
No 76
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.10 E-value=0.0043 Score=57.32 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=38.5
Q ss_pred ccccccccc----HHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhh
Q 006015 9 KINLFDLLS----EEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKH 52 (664)
Q Consensus 9 ~~~~~~~LP----~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~ 52 (664)
-.|.++.|| ++|.+.||+ ||+ ..+++++-+|||+|+++..+.
T Consensus 71 qrDFi~~lP~~gl~hi~e~ils-yld-~~sLc~celv~k~W~r~l~dg 116 (499)
T KOG0281|consen 71 QRDFITALPEQGLDHIAENILS-YLD-ALSLCACELVCKEWKRVLSDG 116 (499)
T ss_pred HHHHHHhcccccHHHHHHHHHH-hcc-hhhhhHHHHHHHHHHHHhccc
Confidence 467899999 999999999 999 999999999999999997754
No 77
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.88 E-value=0.0059 Score=59.25 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=36.3
Q ss_pred cccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHh
Q 006015 11 NLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESK 51 (664)
Q Consensus 11 ~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~ 51 (664)
..|++||+|++..|.. +|+..-|+.+++.||+.||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~-~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAG-RLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHh-hCCcHHHHHHHHhhhhhHHHhccc
Confidence 3589999999999999 998789999999999999998663
No 78
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.83 E-value=0.013 Score=32.38 Aligned_cols=22 Identities=45% Similarity=0.845 Sum_probs=11.2
Q ss_pred CCCcEEEcCCCCCCChHHHHHH
Q 006015 456 SKLKELDLYRCVGITDSGILTI 477 (664)
Q Consensus 456 ~~L~~L~l~~~~~~~~~~~~~~ 477 (664)
++|++|++++|..++|.++..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4455555555555555554443
No 79
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.70 E-value=0.0069 Score=55.67 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=35.3
Q ss_pred cccccccccHHHHHHHHhhccc---CccchhHHHHHhHHHHHHHHhh
Q 006015 9 KINLFDLLSEEIVFIILDCLNT---NPFDKKSFSLVCKSFYITESKH 52 (664)
Q Consensus 9 ~~~~~~~LP~evl~~If~~~L~---~~~~~~~~~~vck~W~~~~~~~ 52 (664)
....|..|||||+..||.+-++ +.+++.++++|||.|+..++..
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~ 149 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP 149 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh
Confidence 3446789999999999994332 2588999999999999997744
No 80
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.49 E-value=0.017 Score=31.86 Aligned_cols=23 Identities=43% Similarity=0.817 Sum_probs=12.5
Q ss_pred CCcCcEEeccCccccChhhHHHH
Q 006015 532 CKQLIKLDIKWCHNINDVGMLPL 554 (664)
Q Consensus 532 ~~~L~~L~l~~~~~i~~~~~~~~ 554 (664)
|++|++|++++|+.++|.++..+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHH
Confidence 34555555555555555555443
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=94.59 E-value=0.023 Score=30.64 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=14.8
Q ss_pred CcccCeeeeccCCCChhHHHHhh
Q 006015 558 SQNLRQINLSYTSVTDVGLLSLA 580 (664)
Q Consensus 558 ~~~L~~L~l~~n~l~~~~~~~l~ 580 (664)
+++|++|+|++|+|++.++.+++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 36778888888888877776653
No 82
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.57 E-value=0.027 Score=29.55 Aligned_cols=19 Identities=32% Similarity=0.268 Sum_probs=12.4
Q ss_pred ccCeeeeccCCCChhHHHHh
Q 006015 560 NLRQINLSYTSVTDVGLLSL 579 (664)
Q Consensus 560 ~L~~L~l~~n~l~~~~~~~l 579 (664)
+|++||+++|+++. +|..+
T Consensus 1 ~L~~Ldls~n~l~~-ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLTS-IPSSF 19 (22)
T ss_dssp TESEEEETSSEESE-EGTTT
T ss_pred CccEEECCCCcCEe-CChhh
Confidence 47788888888773 44333
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.39 E-value=0.02 Score=47.52 Aligned_cols=119 Identities=18% Similarity=0.365 Sum_probs=38.6
Q ss_pred cCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCc
Q 006015 480 GCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQ 559 (664)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~ 559 (664)
+|++|+.+.+.. .+.......+..+++|+.+.+.+. +... -...+.++++|+.+.+.++ +...+. .....++
T Consensus 10 ~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i-~~~~F~~~~~l~~i~~~~~--~~~i~~-~~F~~~~ 81 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSI-GDNAFSNCKSLESITFPNN--LKSIGD-NAFSNCT 81 (129)
T ss_dssp T-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE--TTTTTT-TT-EEEEETST--T-EE-T-TTTTT-T
T ss_pred CCCCCCEEEECC--CeeEeChhhccccccccccccccc--cccc-ceeeeeccccccccccccc--cccccc-ccccccc
Confidence 445555555553 144444444555555666665543 2221 1123445555666666432 111111 1111256
Q ss_pred ccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCccc
Q 006015 560 NLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGIT 612 (664)
Q Consensus 560 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~ 612 (664)
+|+.+++..+ +.......+.. . .|+.+.+++ .+..++...|. |++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~---~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSN---C-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT-----T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcC---C-CceEEEECC-CccEECCccccccccCC
Confidence 6666666543 33333223332 2 333444433 34444444444 55553
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.22 E-value=0.029 Score=46.50 Aligned_cols=102 Identities=22% Similarity=0.432 Sum_probs=35.0
Q ss_pred hCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCC
Q 006015 123 SCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCK 202 (664)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (664)
.|++|+.+.+.. .+.......|..+++|+.+.+.+. +...+ ...+.++++|+.+.+.+ .+...+...+ ..++
T Consensus 10 ~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~-~~~F~~~~~l~~i~~~~--~~~~i~~~~F-~~~~ 81 (129)
T PF13306_consen 10 NCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNN--LTSIG-DNAFSNCKSLESITFPN--NLKSIGDNAF-SNCT 81 (129)
T ss_dssp T-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESST--TSCE--TTTTTT-TT-EEEEETS--TT-EE-TTTT-TT-T
T ss_pred CCCCCCEEEECC--CeeEeChhhccccccccccccccc--ccccc-eeeeecccccccccccc--cccccccccc-cccc
Confidence 455556555543 233333344555555666655542 22222 12223344555555543 1111221222 2455
Q ss_pred cCcEEeccCCCCCCchhhhhccCCCcceEecc
Q 006015 203 EIRSLDLSYLPITNKCLPSILKLQHLEDLILE 234 (664)
Q Consensus 203 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~ 234 (664)
+|+.+.+..+ +.......+.++ +|+.+.+.
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 5555555443 332223334444 55555544
No 85
>PF13013 F-box-like_2: F-box-like domain
Probab=91.75 E-value=0.25 Score=38.64 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=29.4
Q ss_pred ccccccHHHHHHHHhhcccCccchhHHHHHhH--HHHHH
Q 006015 12 LFDLLSEEIVFIILDCLNTNPFDKKSFSLVCK--SFYIT 48 (664)
Q Consensus 12 ~~~~LP~evl~~If~~~L~~~~~~~~~~~vck--~W~~~ 48 (664)
.+.+||+||+..||. |-+ ..+.......|+ +|..-
T Consensus 21 tl~DLP~ELl~~I~~-~C~-~~~l~~l~~~~~~~r~~r~ 57 (109)
T PF13013_consen 21 TLLDLPWELLQLIFD-YCN-DPILLALSRTCRAYRSWRD 57 (109)
T ss_pred chhhChHHHHHHHHh-hcC-cHHHHHHHHHHHHHHHHHH
Confidence 688999999999999 998 888888888887 44433
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.28 E-value=0.1 Score=28.01 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=8.6
Q ss_pred CCccEEcccCCCCCChHhHHHH
Q 006015 430 SKLSVLKLGICLNITGEGLAHV 451 (664)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~l 451 (664)
++|+.|+|++| .+++.++..+
T Consensus 2 ~~L~~L~l~~n-~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNN-QITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSS-BEHHHHHHHH
T ss_pred CCCCEEEccCC-cCCHHHHHHh
Confidence 34444444444 4444444433
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.24 E-value=0.21 Score=24.16 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=7.4
Q ss_pred cccCeeeeccCCCCh
Q 006015 559 QNLRQINLSYTSVTD 573 (664)
Q Consensus 559 ~~L~~L~l~~n~l~~ 573 (664)
++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTS 15 (17)
T ss_dssp TT-SEEEETSS--SS
T ss_pred CccCEEECCCCCCCC
Confidence 356677777776543
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=89.29 E-value=0.41 Score=26.87 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=16.3
Q ss_pred cccCeeeeccCCCChhHHHHhh
Q 006015 559 QNLRQINLSYTSVTDVGLLSLA 580 (664)
Q Consensus 559 ~~L~~L~l~~n~l~~~~~~~l~ 580 (664)
++|++|+|++|.+++.+...++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 5678888888888877766553
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=86.69 E-value=0.94 Score=45.95 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=24.2
Q ss_pred ccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccC
Q 006015 97 TSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNA 135 (664)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 135 (664)
..+.+..++|+.|.......+..+.+..|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 455566666666665555566666666666666666665
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=85.46 E-value=0.99 Score=25.30 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=7.5
Q ss_pred ccEEcccCCCCCChHhHHH
Q 006015 432 LSVLKLGICLNITGEGLAH 450 (664)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~ 450 (664)
|+.|+|++| .+++.+...
T Consensus 4 L~~LdL~~N-~i~~~G~~~ 21 (28)
T smart00368 4 LRELDLSNN-KLGDEGARA 21 (28)
T ss_pred cCEEECCCC-CCCHHHHHH
Confidence 444444444 444444333
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.32 E-value=2.1 Score=43.58 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=18.5
Q ss_pred CCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCC
Q 006015 454 CCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYL 492 (664)
Q Consensus 454 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 492 (664)
+.|.+..+.+++|....-+.+..+.+..|+|..|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 444555555554443322344444444555555555554
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.45 E-value=0.45 Score=26.08 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=5.6
Q ss_pred ccCeeeeccCCCC
Q 006015 560 NLRQINLSYTSVT 572 (664)
Q Consensus 560 ~L~~L~l~~n~l~ 572 (664)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444433
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.45 E-value=0.45 Score=26.08 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=5.6
Q ss_pred ccCeeeeccCCCC
Q 006015 560 NLRQINLSYTSVT 572 (664)
Q Consensus 560 ~L~~L~l~~n~l~ 572 (664)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444433
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=81.44 E-value=0.49 Score=49.49 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=40.8
Q ss_pred cccccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhhccc
Q 006015 9 KINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKL 56 (664)
Q Consensus 9 ~~~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~~~~ 56 (664)
..+.+..||.|+..+||. ||+ .+++..+++||+.|+.+......+.
T Consensus 104 ~~dfi~~lp~el~~~il~-~Ld-~~~l~~~~~v~~~w~~~~~~~~~~~ 149 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILS-FLD-GRDLLAVRQVCRNWNKLLDDDKVWW 149 (537)
T ss_pred ccchhhcccchhcccccc-cCC-HHHhhhhhhhcchhhhhhhccchhh
Confidence 457899999999999999 999 8999999999999999988665544
No 95
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.16 E-value=5.4 Score=21.92 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=11.2
Q ss_pred cccCeeeeccCCCCh
Q 006015 559 QNLRQINLSYTSVTD 573 (664)
Q Consensus 559 ~~L~~L~l~~n~l~~ 573 (664)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 567888888888754
No 96
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=58.73 E-value=6.7 Score=30.26 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.3
Q ss_pred cccccccHHHHHHHHhhcccCccchhH
Q 006015 11 NLFDLLSEEIVFIILDCLNTNPFDKKS 37 (664)
Q Consensus 11 ~~~~~LP~evl~~If~~~L~~~~~~~~ 37 (664)
+.|..||.|+-..|++ +|+ ..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~-~L~-~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILE-YLS-NKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHH-cCC-HHHHHH
Confidence 7899999999999999 999 777754
No 97
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=55.53 E-value=12 Score=20.51 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=12.1
Q ss_pred CcEEEccCccccChHHHHHHHhcCC
Q 006015 152 LEKLWMGRCKMVTDMGVGCIAVGCK 176 (664)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (664)
|++|.|.......+..+..+..+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 5566666555333334455444443
No 98
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=53.48 E-value=22 Score=32.70 Aligned_cols=40 Identities=18% Similarity=0.007 Sum_probs=32.7
Q ss_pred ccccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHH
Q 006015 10 INLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITES 50 (664)
Q Consensus 10 ~~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~ 50 (664)
.-.+.+||.|++..|+. ++++-+|+..+..|-..-+.+..
T Consensus 199 ~ltl~dLP~e~vl~Il~-rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILL-RLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred CCCcccchHHHHHHHHH-HccCcchHHHHHHhhHHHHHHHH
Confidence 45899999999999999 99989999998887655444443
No 99
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.06 E-value=51 Score=33.40 Aligned_cols=146 Identities=12% Similarity=0.011 Sum_probs=73.1
Q ss_pred hccCCCccEEcccCCCCCChHhHHHHhhCC-----CCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHH
Q 006015 426 ISRCSKLSVLKLGICLNITGEGLAHVGMCC-----SKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSL 500 (664)
Q Consensus 426 l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 500 (664)
++.-+++ +|++..+ ...++.+..+.-.+ ..=-++++..|+ ..+..+.....+-..++.|.+..+. +..+.-
T Consensus 296 fS~~~sg-hln~~~~-~~psE~lks~LLgla~ne~t~g~rldl~~cp-~~~a~vleaci~g~R~q~l~~rdnn-ldgeg~ 371 (553)
T KOG4242|consen 296 FSPDPSG-HLNSRPR-YTPSEKLKSMLLGLAENEATLGARLDLRRCP-LERAEVLEACIFGQRVQVLLQRDNN-LDGEGG 371 (553)
T ss_pred cCcCccc-ccccccc-cCchhhhhhhhcccccccccccccCChhhcc-ccccchhhccccceeeeEeeccccc-cccccc
Confidence 3334566 7777777 66555554432111 111345555666 3322233222223458888887765 443322
Q ss_pred H--hhhcCCCCCEEEccCCCC--CCH-----HHHHHHHhcCCcCcEEeccCccccChhhHHHHH-hcCcccCeeeeccCC
Q 006015 501 L--SLSKCSRLNTFESRGCPL--ITS-----LGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLA-HFSQNLRQINLSYTS 570 (664)
Q Consensus 501 ~--~l~~~~~L~~L~l~~~~~--l~~-----~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~-~~~~~L~~L~l~~n~ 570 (664)
. .+..-++.+.+++.+-.. +-+ ..+...-....-+..+.++.|+.-.+.+..... ..-+.+.+|++++|.
T Consensus 372 ~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~ 451 (553)
T KOG4242|consen 372 AVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNG 451 (553)
T ss_pred cccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCC
Confidence 2 233456777777765422 100 001111122335777888888543333322211 124788999999998
Q ss_pred CChhH
Q 006015 571 VTDVG 575 (664)
Q Consensus 571 l~~~~ 575 (664)
..+.+
T Consensus 452 mgd~g 456 (553)
T KOG4242|consen 452 MGDGG 456 (553)
T ss_pred cccCC
Confidence 76643
No 100
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=40.98 E-value=48 Score=31.89 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhh---CCCCCEEEccCCCCChhhHHhhc----cCCCccEEcccCCCC
Q 006015 370 VSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQR---CRFLEELDLTDNEIDDEGLKSIS----RCSKLSVLKLGICLN 442 (664)
Q Consensus 370 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~ 442 (664)
..+..+-.+-+.++.+++.+...++...+..+... .+..+.+.+.+++..+....++. -++.|+.|++.+| .
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnvesn-F 266 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVESN-F 266 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCchhHHHHHHHHhhcchhhheecccc-c
Confidence 33444445566777777777666666555555433 24455555555555554443332 2455666666666 5
Q ss_pred CChHhHHHH
Q 006015 443 ITGEGLAHV 451 (664)
Q Consensus 443 l~~~~~~~l 451 (664)
|+..++..+
T Consensus 267 Itg~gi~a~ 275 (353)
T KOG3735|consen 267 ITGLGIMAL 275 (353)
T ss_pred cccHHHHHH
Confidence 655554443
No 101
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=36.73 E-value=10 Score=20.84 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=5.3
Q ss_pred eeccCCCCHHHH
Q 006015 590 ILHLKGLSLNGL 601 (664)
Q Consensus 590 ~l~l~~n~~~~~ 601 (664)
.++.++|.++.+
T Consensus 6 ~L~vs~N~Lt~L 17 (26)
T smart00364 6 ELNVSNNQLTSL 17 (26)
T ss_pred eeecCCCccccC
Confidence 444444444444
No 102
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=26.02 E-value=41 Score=32.45 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=33.2
Q ss_pred cccccccHHHHHHHHhhcccCcc-------chhHHHHHhHHHHHHHHhh
Q 006015 11 NLFDLLSEEIVFIILDCLNTNPF-------DKKSFSLVCKSFYITESKH 52 (664)
Q Consensus 11 ~~~~~LP~evl~~If~~~L~~~~-------~~~~~~~vck~W~~~~~~~ 52 (664)
..+..||.|.+..|+. +....+ ..+++.-||+.|++++.+.
T Consensus 43 ~~~~~l~~~~L~d~~~-r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLK-RDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhh-hccccccccccccccccccchhhhhhhhcccc
Confidence 4788999999999999 886443 4577788999999986643
No 103
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=25.27 E-value=2.7 Score=37.72 Aligned_cols=84 Identities=11% Similarity=-0.037 Sum_probs=52.6
Q ss_pred cCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCc
Q 006015 531 GCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGG 610 (664)
Q Consensus 531 ~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~ 610 (664)
.+...+.||++.|+....-.-... ++.|..||++.|.+.- .|.. +.+++.+..++..+|..+..|......|.
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~---~t~~~rl~~sknq~~~-~~~d---~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSI---LTRLVRLDLSKNQIKF-LPKD---AKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHH---HHHHHHHhccHhhHhh-Chhh---HHHHHHHHHHHhhccchhhCCccccccCC
Confidence 456777888887743222111111 3556778888777543 3333 34455556667778888888877777888
Q ss_pred ccceeee-hhhc
Q 006015 611 ITKVKLQ-AAFK 621 (664)
Q Consensus 611 L~~l~l~-n~~~ 621 (664)
++.+++- +.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 8888877 6554
Done!