Query 006015
Match_columns 664
No_of_seqs 414 out of 3987
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 13:42:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 1.8E-42 6.1E-47 373.0 44.8 491 10-579 3-526 (594)
2 3ogk_B Coronatine-insensitive 100.0 1.9E-43 6.6E-48 380.2 33.3 504 12-569 12-548 (592)
3 3rgz_A Protein brassinosteroid 100.0 5.3E-46 1.8E-50 409.0 -11.0 422 200-644 221-716 (768)
4 3rgz_A Protein brassinosteroid 100.0 3.7E-45 1.3E-49 402.3 -7.5 570 42-645 39-693 (768)
5 1ziw_A TOLL-like receptor 3; i 100.0 8.2E-42 2.8E-46 373.2 1.9 566 66-659 43-638 (680)
6 3t6q_A CD180 antigen; protein- 100.0 7.8E-41 2.7E-45 360.6 0.2 516 74-626 35-565 (606)
7 1ziw_A TOLL-like receptor 3; i 100.0 5E-39 1.7E-43 351.2 -0.5 546 72-643 25-595 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-39 8.2E-44 348.9 -4.2 492 98-626 31-563 (606)
9 3t6q_A CD180 antigen; protein- 100.0 1.2E-38 4.1E-43 343.5 -0.5 527 95-658 29-574 (606)
10 3ogk_B Coronatine-insensitive 100.0 1.3E-33 4.4E-38 303.6 35.7 470 119-625 67-579 (592)
11 2p1m_B Transport inhibitor res 100.0 2.2E-33 7.6E-38 302.1 37.0 407 199-617 102-539 (594)
12 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-38 8.2E-43 341.1 -5.4 501 124-659 31-573 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.8E-35 9.6E-40 313.4 3.9 476 97-625 24-514 (549)
14 3j0a_A TOLL-like receptor 5; m 100.0 2E-37 6.7E-42 344.5 -14.0 523 97-657 22-573 (844)
15 1z7x_W Ribonuclease inhibitor; 100.0 2.6E-30 9.1E-35 268.8 35.4 171 404-579 225-418 (461)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-34 7.1E-39 306.7 3.6 468 125-649 26-514 (549)
17 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-29 5.6E-34 262.8 39.7 398 126-579 4-447 (461)
18 2z63_A TOLL-like receptor 4, v 100.0 2.5E-35 8.5E-40 315.6 -6.1 493 97-627 26-537 (570)
19 2z63_A TOLL-like receptor 4, v 100.0 2.8E-35 9.7E-40 315.2 -10.0 490 72-600 28-532 (570)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-33 5.6E-38 297.3 -0.7 444 176-650 21-486 (520)
21 3j0a_A TOLL-like receptor 5; m 100.0 1E-34 3.6E-39 322.6 -11.4 492 124-646 23-540 (844)
22 2z7x_B TOLL-like receptor 1, v 100.0 7.3E-32 2.5E-36 284.7 9.4 436 99-599 21-481 (520)
23 4eco_A Uncharacterized protein 100.0 4.2E-32 1.5E-36 291.4 -3.7 372 246-644 201-623 (636)
24 4ecn_A Leucine-rich repeat pro 100.0 2.8E-31 9.7E-36 288.8 0.6 372 247-646 444-865 (876)
25 4ecn_A Leucine-rich repeat pro 100.0 1.3E-30 4.5E-35 283.6 1.3 354 199-578 445-846 (876)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.9E-32 3.4E-36 285.8 -7.5 106 200-315 74-181 (562)
27 4eco_A Uncharacterized protein 100.0 7.8E-31 2.7E-35 281.5 -0.7 329 218-573 239-601 (636)
28 4g8a_A TOLL-like receptor 4; l 100.0 8.7E-31 3E-35 284.7 -4.0 530 97-659 50-595 (635)
29 2ast_B S-phase kinase-associat 99.9 7E-27 2.4E-31 231.9 21.4 294 9-365 5-304 (336)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.1E-29 1.4E-33 265.7 4.6 179 405-600 330-511 (562)
31 1o6v_A Internalin A; bacterial 99.9 8E-27 2.7E-31 241.8 19.4 346 175-601 45-390 (466)
32 3v47_A TOLL-like receptor 5B a 99.9 6E-29 2E-33 258.0 -0.0 374 202-625 30-412 (455)
33 1o6v_A Internalin A; bacterial 99.9 4.9E-26 1.7E-30 235.9 21.4 346 148-573 44-389 (466)
34 4g8a_A TOLL-like receptor 4; l 99.9 3.9E-29 1.3E-33 271.7 -4.1 515 73-625 53-584 (635)
35 3v47_A TOLL-like receptor 5B a 99.9 1.3E-27 4.6E-32 247.8 6.7 317 200-544 77-406 (455)
36 4fmz_A Internalin; leucine ric 99.9 7.6E-25 2.6E-29 218.2 23.7 280 200-543 42-321 (347)
37 4fmz_A Internalin; leucine ric 99.9 1.1E-24 3.8E-29 217.0 23.5 303 251-598 43-345 (347)
38 3bz5_A Internalin-J, INLJ; leu 99.9 2.6E-26 8.8E-31 235.4 7.6 285 275-630 103-396 (457)
39 3bz5_A Internalin-J, INLJ; leu 99.9 1.6E-25 5.6E-30 229.5 10.0 204 124-365 41-244 (457)
40 1jl5_A Outer protein YOPM; leu 99.9 3.9E-27 1.3E-31 241.3 -5.5 401 125-627 11-417 (454)
41 1jl5_A Outer protein YOPM; leu 99.9 2.9E-25 9.8E-30 227.4 2.8 347 175-600 10-371 (454)
42 3o6n_A APL1; leucine-rich repe 99.9 4.2E-24 1.5E-28 216.2 11.3 306 149-517 44-349 (390)
43 3o6n_A APL1; leucine-rich repe 99.9 5.9E-24 2E-28 215.2 7.0 316 175-579 44-359 (390)
44 3oja_B Anopheles plasmodium-re 99.9 2.8E-23 9.7E-28 221.7 11.0 297 200-532 73-369 (597)
45 2id5_A Lingo-1, leucine rich r 99.9 1.4E-24 4.8E-29 226.2 0.6 285 296-599 49-333 (477)
46 2id5_A Lingo-1, leucine rich r 99.9 3.2E-24 1.1E-28 223.5 2.5 137 405-548 199-335 (477)
47 2ast_B S-phase kinase-associat 99.9 4E-21 1.4E-25 190.4 21.7 241 252-504 70-314 (336)
48 3oja_B Anopheles plasmodium-re 99.9 3.1E-23 1E-27 221.5 6.7 313 200-575 49-361 (597)
49 2ca6_A RAN GTPase-activating p 99.9 1.2E-20 3.9E-25 190.6 19.9 165 404-573 92-288 (386)
50 2ca6_A RAN GTPase-activating p 99.8 4.2E-19 1.4E-23 179.1 25.8 248 296-575 25-319 (386)
51 1xku_A Decorin; proteoglycan, 99.8 6.7E-21 2.3E-25 187.9 7.3 265 177-517 32-303 (330)
52 3goz_A Leucine-rich repeat-con 99.8 8.7E-19 3E-23 174.8 18.4 260 333-601 3-299 (362)
53 1xku_A Decorin; proteoglycan, 99.8 1.4E-20 4.8E-25 185.6 4.4 181 404-597 143-330 (330)
54 1ogq_A PGIP-2, polygalacturona 99.8 8E-23 2.7E-27 199.2 -12.8 202 404-619 99-302 (313)
55 3goz_A Leucine-rich repeat-con 99.8 7.4E-18 2.5E-22 168.0 21.2 226 349-579 45-304 (362)
56 2ft3_A Biglycan; proteoglycan, 99.8 7E-21 2.4E-25 187.8 -0.8 132 406-543 193-330 (332)
57 2z80_A TOLL-like receptor 2, v 99.8 6.6E-21 2.3E-25 189.8 -2.0 285 326-625 29-318 (353)
58 3o53_A Protein LRIM1, AGAP0063 99.8 3.7E-20 1.3E-24 181.0 3.4 217 300-543 31-247 (317)
59 2ft3_A Biglycan; proteoglycan, 99.8 6.5E-21 2.2E-25 188.1 -4.5 295 99-440 33-330 (332)
60 2z80_A TOLL-like receptor 2, v 99.8 1.8E-19 6.3E-24 179.3 5.1 140 404-575 172-317 (353)
61 1ogq_A PGIP-2, polygalacturona 99.8 3.2E-21 1.1E-25 187.9 -7.7 61 176-238 50-113 (313)
62 3zyi_A Leucine-rich repeat-con 99.8 1.8E-20 6.2E-25 193.2 -3.5 232 379-625 74-307 (452)
63 3zyj_A Leucine-rich repeat-con 99.8 2.2E-20 7.7E-25 191.8 -3.4 231 379-624 63-295 (440)
64 2z66_A Variable lymphocyte rec 99.7 1.7E-20 5.8E-25 183.0 -5.9 168 404-577 124-292 (306)
65 2z66_A Variable lymphocyte rec 99.7 6.9E-21 2.3E-25 185.7 -8.7 234 379-625 27-265 (306)
66 3o53_A Protein LRIM1, AGAP0063 99.7 2.2E-19 7.6E-24 175.5 1.5 265 305-626 12-281 (317)
67 1wwl_A Monocyte differentiatio 99.7 4.5E-20 1.6E-24 179.9 -4.2 209 352-573 93-310 (312)
68 1ozn_A Reticulon 4 receptor; N 99.7 3.5E-19 1.2E-23 171.5 2.0 210 406-626 32-243 (285)
69 3zyj_A Leucine-rich repeat-con 99.7 1.5E-19 5.2E-24 185.6 -1.5 229 354-599 64-292 (440)
70 3zyi_A Leucine-rich repeat-con 99.7 1.8E-19 6.1E-24 185.8 -1.0 229 354-599 75-303 (452)
71 4fcg_A Uncharacterized protein 99.7 1.2E-18 4E-23 170.7 2.9 231 278-543 81-311 (328)
72 1ozn_A Reticulon 4 receptor; N 99.7 1.7E-18 5.7E-23 166.8 2.4 238 303-580 32-269 (285)
73 3oja_A Leucine-rich immune mol 99.7 2E-19 7E-24 186.0 -6.1 247 341-617 17-270 (487)
74 4fcg_A Uncharacterized protein 99.7 1.5E-18 5.1E-23 170.0 0.4 232 175-440 80-311 (328)
75 3oja_A Leucine-rich immune mol 99.7 4E-18 1.4E-22 176.3 3.4 236 279-567 35-270 (487)
76 2z62_A TOLL-like receptor 4, v 99.7 1.6E-18 5.5E-23 166.0 -0.4 209 406-625 28-241 (276)
77 1wwl_A Monocyte differentiatio 99.7 3.1E-18 1E-22 167.0 1.0 205 404-622 93-310 (312)
78 3g06_A SSPH2 (leucine-rich rep 99.7 4.4E-17 1.5E-21 171.7 9.6 228 302-582 80-307 (622)
79 3g06_A SSPH2 (leucine-rich rep 99.7 1.9E-16 6.3E-21 167.0 13.6 261 279-603 41-301 (622)
80 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.7E-21 155.4 8.4 192 379-600 40-231 (308)
81 3rfs_A Internalin B, repeat mo 99.6 1.6E-17 5.5E-22 158.3 1.0 203 404-628 39-242 (272)
82 4glp_A Monocyte differentiatio 99.6 2.3E-17 7.9E-22 160.7 2.1 183 378-573 115-308 (310)
83 2z62_A TOLL-like receptor 4, v 99.6 1.6E-18 5.3E-23 166.1 -6.5 211 430-649 28-241 (276)
84 3rfs_A Internalin B, repeat mo 99.6 2.8E-17 9.4E-22 156.7 2.1 188 377-584 60-247 (272)
85 4glp_A Monocyte differentiatio 99.6 1.3E-17 4.3E-22 162.5 -0.4 228 379-621 63-307 (310)
86 1h6u_A Internalin H; cell adhe 99.6 1.6E-16 5.6E-21 154.1 6.4 193 352-573 39-231 (308)
87 3un9_A NLR family member X1; l 99.6 6.9E-15 2.4E-19 145.6 16.4 190 405-599 71-283 (372)
88 2o6q_A Variable lymphocyte rec 99.6 1E-16 3.4E-21 152.7 -0.9 181 406-622 37-219 (270)
89 1p9a_G Platelet glycoprotein I 99.5 6.9E-17 2.3E-21 155.0 -5.0 202 404-623 8-210 (290)
90 1p9a_G Platelet glycoprotein I 99.5 3E-16 1E-20 150.6 -0.9 202 377-599 7-208 (290)
91 2o6q_A Variable lymphocyte rec 99.5 9.7E-16 3.3E-20 145.9 2.2 202 355-572 17-218 (270)
92 1h6t_A Internalin B; cell adhe 99.5 8.2E-15 2.8E-19 140.7 5.0 149 404-573 66-214 (291)
93 2xwt_C Thyrotropin receptor; s 99.5 2.1E-16 7.2E-21 147.6 -6.5 129 381-517 32-166 (239)
94 4ezg_A Putative uncharacterize 99.5 1.4E-14 4.9E-19 130.4 5.3 107 481-598 87-193 (197)
95 1h6t_A Internalin B; cell adhe 99.5 3.7E-14 1.3E-18 136.1 8.4 171 404-600 44-214 (291)
96 3un9_A NLR family member X1; l 99.5 1.9E-13 6.6E-18 135.3 13.2 172 429-605 71-258 (372)
97 4ezg_A Putative uncharacterize 99.5 3.8E-14 1.3E-18 127.6 6.6 154 404-573 42-195 (197)
98 2xwt_C Thyrotropin receptor; s 99.4 3.1E-15 1E-19 139.7 -2.6 197 406-617 31-234 (239)
99 1m9s_A Internalin B; cell inva 99.4 3.9E-14 1.3E-18 149.2 4.5 149 404-573 63-211 (605)
100 3m19_A Variable lymphocyte rec 99.4 2.1E-14 7.3E-19 134.9 0.2 59 407-467 36-94 (251)
101 3m19_A Variable lymphocyte rec 99.4 4.8E-14 1.7E-18 132.5 2.6 155 380-543 35-189 (251)
102 2o6s_A Variable lymphocyte rec 99.4 1.8E-14 6.1E-19 131.2 -0.6 163 406-584 28-190 (208)
103 3cvr_A Invasion plasmid antige 99.4 5E-14 1.7E-18 146.6 2.6 190 407-630 60-252 (571)
104 1m9s_A Internalin B; cell inva 99.4 3.3E-13 1.1E-17 142.2 7.9 172 404-601 41-212 (605)
105 3e4g_A ATP synthase subunit S, 99.3 1.6E-12 5.5E-17 110.7 7.6 91 431-523 62-155 (176)
106 1xeu_A Internalin C; cellular 99.3 1.1E-13 3.8E-18 130.5 -0.5 168 407-601 20-187 (263)
107 1xeu_A Internalin C; cellular 99.3 6.4E-13 2.2E-17 125.3 1.9 149 404-574 39-187 (263)
108 2je0_A Acidic leucine-rich nuc 99.3 1.3E-12 4.4E-17 111.7 2.8 59 480-543 40-98 (149)
109 3e4g_A ATP synthase subunit S, 99.3 7.6E-12 2.6E-16 106.6 7.3 104 406-510 61-170 (176)
110 2o6s_A Variable lymphocyte rec 99.2 5.1E-13 1.7E-17 121.5 -0.9 135 479-627 49-184 (208)
111 2ell_A Acidic leucine-rich nuc 99.2 4.2E-13 1.4E-17 117.4 -2.2 33 585-617 119-155 (168)
112 1dce_A Protein (RAB geranylger 99.2 1.9E-13 6.4E-18 143.2 -6.4 122 482-616 441-567 (567)
113 2xot_A Amphoterin-induced prot 99.2 9.2E-13 3.1E-17 130.9 -1.5 180 409-599 21-202 (361)
114 2je0_A Acidic leucine-rich nuc 99.2 1.3E-11 4.5E-16 105.3 5.7 130 405-542 16-149 (149)
115 2xot_A Amphoterin-induced prot 99.2 5.4E-12 1.8E-16 125.4 3.6 156 408-572 41-202 (361)
116 2ell_A Acidic leucine-rich nuc 99.2 5E-12 1.7E-16 110.5 2.9 131 405-543 23-157 (168)
117 3cvr_A Invasion plasmid antige 99.2 4.8E-12 1.6E-16 131.7 3.1 153 404-584 98-255 (571)
118 2v9t_B SLIT homolog 2 protein 99.2 5E-12 1.7E-16 115.6 2.7 135 406-547 32-166 (220)
119 4ay9_X Follicle-stimulating ho 99.2 3E-13 1E-17 133.9 -6.7 205 125-339 30-234 (350)
120 1dce_A Protein (RAB geranylger 99.2 1.9E-13 6.5E-18 143.1 -9.3 194 352-575 347-549 (567)
121 3sb4_A Hypothetical leucine ri 99.2 3.8E-12 1.3E-16 124.8 0.4 271 327-615 24-327 (329)
122 3e6j_A Variable lymphocyte rec 99.1 9.4E-12 3.2E-16 114.7 2.6 34 407-440 41-74 (229)
123 3sb4_A Hypothetical leucine ri 99.1 6.3E-12 2.2E-16 123.2 1.0 104 148-263 23-135 (329)
124 2v70_A SLIT-2, SLIT homolog 2 99.1 1.5E-11 5.2E-16 112.4 2.7 132 407-545 33-165 (220)
125 1a9n_A U2A', U2A'; complex (nu 99.1 2.1E-11 7.2E-16 107.3 3.4 36 429-467 18-53 (176)
126 2v9t_B SLIT homolog 2 protein 99.1 5.3E-12 1.8E-16 115.5 -1.0 132 456-621 32-165 (220)
127 4ay9_X Follicle-stimulating ho 99.1 1.9E-13 6.4E-18 135.4 -11.8 223 379-617 29-254 (350)
128 3e6j_A Variable lymphocyte rec 99.1 2.7E-11 9.2E-16 111.6 2.9 133 430-572 40-172 (229)
129 1a9n_A U2A', U2A'; complex (nu 99.1 6.1E-11 2.1E-15 104.3 3.5 105 404-517 17-123 (176)
130 1ds9_A Outer arm dynein; leuci 99.0 5E-12 1.7E-16 113.8 -3.8 108 425-543 43-150 (198)
131 2ra8_A Uncharacterized protein 99.0 8.5E-10 2.9E-14 108.0 11.7 57 404-464 170-227 (362)
132 2v70_A SLIT-2, SLIT homolog 2 99.0 5.7E-11 1.9E-15 108.6 2.3 132 381-518 33-164 (220)
133 1ds9_A Outer arm dynein; leuci 99.0 7.8E-12 2.7E-16 112.5 -4.9 126 477-615 43-180 (198)
134 1io0_A Tropomodulin; LRR prote 99.0 7.4E-09 2.5E-13 91.3 14.3 116 454-572 34-164 (185)
135 2ra8_A Uncharacterized protein 99.0 2.2E-09 7.6E-14 105.0 11.5 82 326-413 137-226 (362)
136 1io0_A Tropomodulin; LRR prote 99.0 1.3E-08 4.4E-13 89.7 14.5 127 472-600 26-165 (185)
137 4b8c_D Glucose-repressible alc 98.9 2.5E-11 8.5E-16 131.4 -4.4 111 423-544 217-327 (727)
138 4b8c_D Glucose-repressible alc 98.9 3.8E-11 1.3E-15 130.0 -4.8 149 402-569 220-369 (727)
139 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 1.6E-09 5.6E-14 72.5 3.6 42 9-52 5-46 (53)
140 1w8a_A SLIT protein; signaling 98.8 4E-10 1.4E-14 100.5 0.2 109 431-545 30-138 (192)
141 2wfh_A SLIT homolog 2 protein 98.7 3.6E-09 1.2E-13 94.2 2.6 108 430-545 31-138 (193)
142 1w8a_A SLIT protein; signaling 98.7 3.1E-09 1.1E-13 94.6 2.1 78 179-263 11-89 (192)
143 4fs7_A Uncharacterized protein 98.7 2.7E-10 9.2E-15 114.6 -5.6 61 478-543 316-376 (394)
144 2o6r_A Variable lymphocyte rec 98.7 4.6E-09 1.6E-13 92.3 3.0 61 480-543 74-134 (177)
145 2o6r_A Variable lymphocyte rec 98.7 6.5E-09 2.2E-13 91.4 3.6 110 406-520 28-137 (177)
146 2wfh_A SLIT homolog 2 protein 98.7 8.2E-09 2.8E-13 91.9 4.2 107 406-518 31-137 (193)
147 4fs7_A Uncharacterized protein 98.7 7.3E-10 2.5E-14 111.5 -4.1 36 479-516 340-375 (394)
148 4fdw_A Leucine rich hypothetic 98.6 1.8E-09 6.1E-14 107.9 -4.7 33 483-517 249-281 (401)
149 4fdw_A Leucine rich hypothetic 98.5 9.5E-09 3.3E-13 102.6 -2.0 58 404-465 321-379 (401)
150 1pgv_A TMD-1, tropomodulin TMD 98.4 5.8E-06 2E-10 71.8 14.1 121 371-492 32-167 (197)
151 3g39_A Variable lymphocyte rec 98.4 1.3E-07 4.4E-12 82.1 2.6 61 481-544 53-113 (170)
152 1pgv_A TMD-1, tropomodulin TMD 98.3 1.1E-05 3.7E-10 70.1 13.5 69 454-524 39-114 (197)
153 2r9u_A Variable lymphocyte rec 98.3 2.2E-07 7.5E-12 80.9 2.7 61 481-544 56-116 (174)
154 3g39_A Variable lymphocyte rec 98.2 9.5E-08 3.3E-12 82.9 -2.3 108 508-625 10-119 (170)
155 4gt6_A Cell surface protein; l 98.1 1.5E-07 5E-12 94.6 -2.1 102 404-517 286-388 (394)
156 4gt6_A Cell surface protein; l 98.1 6.2E-07 2.1E-11 90.0 2.0 61 478-543 307-367 (394)
157 2r9u_A Variable lymphocyte rec 98.1 1.6E-06 5.3E-11 75.5 2.9 84 430-518 33-116 (174)
158 2ifg_A High affinity nerve gro 97.8 1.3E-06 4.5E-11 86.0 -2.7 107 511-625 12-120 (347)
159 2e31_A FBS1, F-box only protei 97.7 7.2E-06 2.5E-10 75.9 1.8 41 10-52 48-89 (297)
160 2ifg_A High affinity nerve gro 97.7 1.3E-05 4.3E-10 78.9 2.9 85 404-493 29-114 (347)
161 3l2o_B F-box only protein 4; s 97.7 1.1E-05 3.6E-10 73.5 2.0 42 11-54 3-44 (312)
162 3rw6_A Nuclear RNA export fact 97.7 0.00011 3.7E-09 67.8 8.2 82 403-488 167-257 (267)
163 3rw6_A Nuclear RNA export fact 97.6 9.9E-05 3.4E-09 68.1 7.1 82 530-615 167-257 (267)
164 3v7d_B Cell division control p 97.3 6.8E-05 2.3E-09 77.1 2.4 44 6-51 8-51 (464)
165 1p22_A F-BOX/WD-repeat protein 97.2 0.00013 4.5E-09 74.3 2.7 44 7-52 5-52 (435)
166 4h09_A Hypothetical leucine ri 97.1 4.4E-05 1.5E-09 76.1 -1.7 60 479-542 283-342 (379)
167 4h09_A Hypothetical leucine ri 97.0 0.0001 3.4E-09 73.4 0.2 11 251-261 45-55 (379)
168 2ovr_B FBW7, F-BOX/WD repeat p 96.9 0.00017 5.8E-09 73.7 0.7 43 7-51 13-55 (445)
169 3rfe_A Platelet glycoprotein I 86.0 0.43 1.5E-05 38.3 2.8 17 529-545 51-67 (130)
170 3rfe_A Platelet glycoprotein I 82.4 1.2 4.2E-05 35.6 4.0 39 202-240 31-69 (130)
171 2lz0_A Uncharacterized protein 41.6 8.3 0.00028 28.9 1.0 34 480-515 18-51 (100)
172 2lz0_A Uncharacterized protein 33.1 8.2 0.00028 28.9 -0.3 15 424-438 14-28 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1.8e-42 Score=372.99 Aligned_cols=491 Identities=21% Similarity=0.284 Sum_probs=280.8
Q ss_pred ccccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhhcccccccc--ccHHHHHhhCCCCcEeeccCCCCCCh
Q 006015 10 INLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQ--EHLPAVLIRYSNTTHLDLSLYPRIND 87 (664)
Q Consensus 10 ~~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~l~~~~~~~~ 87 (664)
.|.|++|||||+.+||+ ||+..+|+.++++|||+|+++....+..+..... ......+.+++++++|+++++..+.+
T Consensus 3 ~d~~~~LPdevL~~If~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFS-FIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp -------CHHHHHHHHH-TCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred ccchhhCCHHHHHHHHh-hcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 37899999999999999 9997899999999999999995544443333222 22455667777777777776543322
Q ss_pred hHHHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHH-hcCCCcEEEccCccccChH
Q 006015 88 HSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALA-EAKNLEKLWMGRCKMVTDM 166 (664)
Q Consensus 88 ~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~ 166 (664)
... .+..| ......++..+...+++|++|++++| .+.+..+..+. .+++|++|++++|..+++.
T Consensus 82 ~~l--~~~~~------------~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 146 (594)
T 2p1m_B 82 FNL--VPDGW------------GGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146 (594)
T ss_dssp GTC--SCTTS------------CCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred ccc--ccccc------------cchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence 111 00000 01223344555556666666666666 35544444444 4566666666665445554
Q ss_pred HHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhc----cCCCcceEeccCCC-CCCH
Q 006015 167 GVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSIL----KLQHLEDLILEGCF-GIDD 241 (664)
Q Consensus 167 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~----~l~~L~~L~l~~~~-~~~~ 241 (664)
++..+...|++|++|++++ |.+++..+..+. .+++|++|++++|. .+..
T Consensus 147 ~l~~~~~~~~~L~~L~L~~--------------------------~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~ 200 (594)
T 2p1m_B 147 GLAAIAATCRNLKELDLRE--------------------------SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200 (594)
T ss_dssp HHHHHHHHCTTCCEEECTT--------------------------CEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH
T ss_pred HHHHHHHhCCCCCEEeCcC--------------------------CccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH
Confidence 4455444455555555544 443333322222 45677777777765 3455
Q ss_pred HHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCC-Cc----HhHHHHhhcCCCccEEEecCCccC
Q 006015 242 CSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSP-VT----LSIANGLKKLSMLQSIKLDGSVVT 316 (664)
Q Consensus 242 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~----~~~~~~l~~l~~L~~L~l~~~~~~ 316 (664)
..+..+...+++|++|++++|... ..++..+..+++|++|++..+.. +. ...+..+.++++|+.|.
T Consensus 201 ~~l~~l~~~~~~L~~L~L~~~~~~--~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls------- 271 (594)
T 2p1m_B 201 SALERLVTRCPNLKSLKLNRAVPL--EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS------- 271 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCTTSCH--HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE-------
T ss_pred HHHHHHHHhCCCCcEEecCCCCcH--HHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc-------
Confidence 555555444788888888877433 23666777777777777665421 11 11222334444444441
Q ss_pred HhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHH
Q 006015 317 RAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPRE 396 (664)
Q Consensus 317 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 396 (664)
.+.. .....++..+..+++|++|++++|. +++..+..+...+++|++|++.+| +.+.
T Consensus 272 -----------------~~~~---~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~ 328 (594)
T 2p1m_B 272 -----------------GFWD---AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDA 328 (594)
T ss_dssp -----------------CCBT---CCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHH
T ss_pred -----------------CCcc---cchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHH
Confidence 1211 2222333333344555555555554 444444444445555555555544 3344
Q ss_pred HHHHHHhhCCCCCEEEc---------cCCCCChhhHHhhcc-CCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcC--
Q 006015 397 AFVLIGQRCRFLEELDL---------TDNEIDDEGLKSISR-CSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLY-- 464 (664)
Q Consensus 397 ~~~~~~~~~~~L~~L~l---------~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~-- 464 (664)
.+..+...+++|++|++ ..+.+++.....+.. +++|+.|.+..+ .+++.++..+...+++|+.|+++
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEeecc
Confidence 44444444555555555 223455554444443 666666655544 66666666665556777777776
Q ss_pred ---CCCCCC----hHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhc-CCCCCEEEccCCCCCCHHHHHHHHhcCCcCc
Q 006015 465 ---RCVGIT----DSGILTIACGCPDLEMINIAYLKDITDSSLLSLSK-CSRLNTFESRGCPLITSLGLAAIAVGCKQLI 536 (664)
Q Consensus 465 ---~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 536 (664)
+|..++ +.++..++.+|++|++|++++ .+++..+..+.. +++|+.|++++| .+++.++.....++++|+
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~ 484 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLR 484 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcC
Confidence 455566 566666667777777777766 367766666665 677777777777 466666666656677777
Q ss_pred EEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHh
Q 006015 537 KLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSL 579 (664)
Q Consensus 537 ~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l 579 (664)
+|++++|+ +++.+.......+++|+.|++++|+++..+...+
T Consensus 485 ~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 526 (594)
T 2p1m_B 485 KLEIRDCP-FGDKALLANASKLETMRSLWMSSCSVSFGACKLL 526 (594)
T ss_dssp EEEEESCS-CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHH
T ss_pred EEECcCCC-CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHH
Confidence 77777774 3555555555556777777777777766666555
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.9e-43 Score=380.16 Aligned_cols=504 Identities=19% Similarity=0.248 Sum_probs=347.9
Q ss_pred ccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhhcccccccc--ccHHHHHhhCCCCcEeeccCCCCCChhH
Q 006015 12 LFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQ--EHLPAVLIRYSNTTHLDLSLYPRINDHS 89 (664)
Q Consensus 12 ~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~L~l~~~~~~~~~~ 89 (664)
...+||||++.+||+ ||+..+++.++++|||+|+.+....+..+..... ..+...+.+++++++|+++++..+.+..
T Consensus 12 ~~~~LPdeil~~I~~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 90 (592)
T 3ogk_B 12 SCVATVDDVIEQVMT-YITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFN 90 (592)
T ss_dssp CCCCCGGGTHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGT
T ss_pred ccCCCCHHHHHHHHH-hcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcc
Confidence 334899999999999 9933999999999999999997766655554433 3467788999999999999875443321
Q ss_pred HHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHh-cCC-CcEEEccCccccChHH
Q 006015 90 LFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAE-AKN-LEKLWMGRCKMVTDMG 167 (664)
Q Consensus 90 ~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~~~~~~~ 167 (664)
. ++. ........++..+...|++|++|++++| .+.+.....+.. +++ |++|++++|..+++.+
T Consensus 91 ~--~~~------------~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~ 155 (592)
T 3ogk_B 91 L--IPE------------NWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDG 155 (592)
T ss_dssp C--SCT------------TSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHH
T ss_pred c--ccc------------cccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHH
Confidence 1 110 1113445667777778999999999998 677777777766 444 9999999988777777
Q ss_pred HHHHHhcCCCcceEeccccCCcChhH---HHHHHHcCCcCcEEeccCCCCCC----chhhhhccCCCcceEeccCCCCCC
Q 006015 168 VGCIAVGCKNLKLISLKWCLGVGDLG---VGLIAVKCKEIRSLDLSYLPITN----KCLPSILKLQHLEDLILEGCFGID 240 (664)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~~----~~~~~l~~l~~L~~L~l~~~~~~~ 240 (664)
+..+...|++|++|++++|. +.+.+ +..+...+++|++|+++++.+++ ..+..+.++++|+.|++.+|....
T Consensus 156 l~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 156 LLSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HHHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred HHHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 88888788999999998884 32222 33344577888888887776652 122222334445555444443322
Q ss_pred HHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCC--cHhHHHHhhcCCCccEEEecCCccCHh
Q 006015 241 DCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPV--TLSIANGLKKLSMLQSIKLDGSVVTRA 318 (664)
Q Consensus 241 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~ 318 (664)
++..+..+++|++|+++..... ....+..+..+++|+.|++.++.. ..
T Consensus 235 -----------------------------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~ 284 (592)
T 3ogk_B 235 -----------------------------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NE 284 (592)
T ss_dssp -----------------------------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TT
T ss_pred -----------------------------HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hH
Confidence 3334444455555554422111 012223345556777777766421 11
Q ss_pred HHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCC---------
Q 006015 319 GLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMES--------- 389 (664)
Q Consensus 319 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--------- 389 (664)
.+. +...+++|++|++++|. +++..+...+..+++|++|++++ .+.+..+..+...+++|++|++++
T Consensus 285 l~~-~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~ 360 (592)
T 3ogk_B 285 MPI-LFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMED 360 (592)
T ss_dssp GGG-GGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSS
T ss_pred HHH-HHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCcccccccc
Confidence 222 22256777777777776 66666666667777777777772 245566666667777888888874
Q ss_pred -CCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhcc-CCCccEEcccC---CCCCCh----HhHHHHhhCCCCCcE
Q 006015 390 -CTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISR-CSKLSVLKLGI---CLNITG----EGLAHVGMCCSKLKE 460 (664)
Q Consensus 390 -~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~~---~~~l~~----~~~~~l~~~~~~L~~ 460 (664)
|..+++.++..+...+++|++|+++.+.+++..+..++. +++|+.|++++ +..+++ .++..+...+++|++
T Consensus 361 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~ 440 (592)
T 3ogk_B 361 EEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440 (592)
T ss_dssp TTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCE
T ss_pred ccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCE
Confidence 667777777777767888888888777888877777766 88888888862 336665 356666667899999
Q ss_pred EEcCCCC-CCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhh-hcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEE
Q 006015 461 LDLYRCV-GITDSGILTIACGCPDLEMINIAYLKDITDSSLLSL-SKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKL 538 (664)
Q Consensus 461 L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (664)
|++++|. .+++.++..+...+++|++|++++|. +++.....+ ..+++|++|++++|+ +++.+++.....+++|++|
T Consensus 441 L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 518 (592)
T 3ogk_B 441 FAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYL 518 (592)
T ss_dssp EEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEE
T ss_pred EEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCee
Confidence 9997655 37777888887788999999999887 887665544 578999999999995 7877788888889999999
Q ss_pred eccCccccChhhHHHHHhcCcccCeeeeccC
Q 006015 539 DIKWCHNINDVGMLPLAHFSQNLRQINLSYT 569 (664)
Q Consensus 539 ~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n 569 (664)
++++|+ +++.+...+...+|.+....+..+
T Consensus 519 ~ls~n~-it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 519 WVQGYR-ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEESCB-CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred ECcCCc-CCHHHHHHHHHhCCCcEEEEecCc
Confidence 999994 788777777666787777666655
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.3e-46 Score=408.99 Aligned_cols=422 Identities=18% Similarity=0.161 Sum_probs=223.0
Q ss_pred cCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhc-cC
Q 006015 200 KCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSS-IG 278 (664)
Q Consensus 200 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~ 278 (664)
.+++|++|++++|.+++..+..+..+++|++|++++|...+..+. . . +++|++|++++|..... ++..+.. ++
T Consensus 221 ~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~-~-l~~L~~L~L~~n~l~~~--ip~~~~~~~~ 294 (768)
T 3rgz_A 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L-P-LKSLQYLSLAENKFTGE--IPDFLSGACD 294 (768)
T ss_dssp TCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C-C-CTTCCEEECCSSEEEES--CCCCSCTTCT
T ss_pred cCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--c-c-cCCCCEEECcCCccCCc--cCHHHHhhcC
Confidence 444455555554444444444444455555555544433221111 0 1 44455555544432211 1111222 36
Q ss_pred CCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHH-HHhcCCCccEEEcCCCCCCCchhHHHHHhhCC-Cc
Q 006015 279 GLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKA-IGDWCVSLKELSLSKCDGVTDEGLSYVATKHR-DL 356 (664)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L 356 (664)
+|+.|+++++ .+.+..+..+..+++|++|++++|.+.+..+.. +. .+++|++|++++|. +.. .++..+..++ +|
T Consensus 295 ~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~-~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~~~L 370 (768)
T 3rgz_A 295 TLTGLDLSGN-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNE-FSG-ELPESLTNLSASL 370 (768)
T ss_dssp TCSEEECCSS-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT-TCTTCCEEECCSSE-EEE-CCCTTHHHHTTTC
T ss_pred cCCEEECcCC-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh-cCCCCCEEeCcCCc-cCc-cccHHHHhhhcCC
Confidence 6666666666 555555666677777777777777665444433 44 66777777777664 111 1111223333 56
Q ss_pred cEEecCCCCCCChHHHHHHH-hcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEE
Q 006015 357 RKLDITCCRKISDVSITHVT-SSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVL 435 (664)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (664)
+.|++++|..... ....+. ..+++|+.|++++|... ......+. .+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 371 ~~L~Ls~N~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 371 LTLDLSSNNFSGP-ILPNLCQNPKNTLQELYLQNNGFT-GKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp SEEECCSSEEEEE-CCTTTTCSTTCCCCEEECCSSEEE-EECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred cEEEccCCCcCCC-cChhhhhcccCCccEEECCCCccc-cccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 6666665542111 010110 11456666666665431 11112222 66777777777777666666667777777777
Q ss_pred cccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEcc
Q 006015 436 KLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESR 515 (664)
Q Consensus 436 ~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~ 515 (664)
++++| .++...+..+. .+++|++|++++|. ++. .++..+..+++|++|++++|. +++..+..+..+++|+.|+++
T Consensus 448 ~L~~n-~l~~~~p~~~~-~l~~L~~L~L~~N~-l~~-~~p~~l~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 448 KLWLN-MLEGEIPQELM-YVKTLETLILDFND-LTG-EIPSGLSNCTNLNWISLSNNR-LTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp ECCSS-CCCSCCCGGGG-GCTTCCEEECCSSC-CCS-CCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGCTTCCEEECC
T ss_pred ECCCC-cccCcCCHHHc-CCCCceEEEecCCc-ccC-cCCHHHhcCCCCCEEEccCCc-cCCcCChHHhcCCCCCEEECC
Confidence 77777 66554444444 56777777777766 431 233345566777777777776 666666666777777777777
Q ss_pred CCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHH-------------------------------------------
Q 006015 516 GCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGML------------------------------------------- 552 (664)
Q Consensus 516 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~------------------------------------------- 552 (664)
+| .++.. ++..+.++++|++|++++|+..+.....
T Consensus 523 ~N-~l~~~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 523 NN-SFSGN-IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp SS-CCEEE-CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CC-cccCc-CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 77 33321 4455666777777777776432110000
Q ss_pred ------------------------H-HHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHH-HHHHHH
Q 006015 553 ------------------------P-LAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNG-LAAALL 606 (664)
Q Consensus 553 ------------------------~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~-~~~~~~ 606 (664)
+ ....+++|+.|++++|++++.+|..++.++ .|+.+++++|.+++ +|..+.
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~---~L~~L~Ls~N~l~g~ip~~l~ 677 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP---YLFILNLGHNDISGSIPDEVG 677 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCT---TCCEEECCSSCCCSCCCGGGG
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccc---cCCEEeCcCCccCCCCChHHh
Confidence 0 000134566666666666666655544333 33456666666653 444444
Q ss_pred hCCcccceeee-hhhcccCChhHHHHHHhcceEEEeecc
Q 006015 607 ACGGITKVKLQ-AAFKQLLPQPLIDHLQARGCVFQWRNK 644 (664)
Q Consensus 607 ~~~~L~~l~l~-n~~~~~~p~~~~~~~~~~~~~~~~~~~ 644 (664)
++++|+.|+|+ |.+.+.+|..+.....+...++++|..
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 56666666666 666666665544444444444444433
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-45 Score=402.26 Aligned_cols=570 Identities=21% Similarity=0.206 Sum_probs=420.7
Q ss_pred hHHHHHHHHhhhccccccccc------c---HHHHHhhCCCCcEeeccCCCCCChhHHHHHhhhccCccceEecCCCCCC
Q 006015 42 CKSFYITESKHRKKLKPLRQE------H---LPAVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGF 112 (664)
Q Consensus 42 ck~W~~~~~~~~~~~~~~~~~------~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~ 112 (664)
|-+|..+... ...++.++.. . ++..+..+++|+.++++... +.. .+..+ ..+++|++|++++|...
T Consensus 39 ~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~-~~~-l~~~~--~~l~~L~~L~Ls~n~l~ 113 (768)
T 3rgz_A 39 PCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSH-ING-SVSGF--KCSASLTSLDLSRNSLS 113 (768)
T ss_dssp GGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSC-EEE-CCCCC--CCCTTCCEEECCSSEEE
T ss_pred CcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCC-cCC-Cchhh--ccCCCCCEEECCCCcCC
Confidence 4467776554 2233333321 1 56677777777877777532 111 01112 25789999999999754
Q ss_pred ChHHH-HHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHH--HHhcCCCcceEeccccCCc
Q 006015 113 SSSGL-LSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGC--IAVGCKNLKLISLKWCLGV 189 (664)
Q Consensus 113 ~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~ 189 (664)
+..+. ..+. .+++|++|++++|..........+..+++|++|++++|. ++...... ....+++|++|++++|...
T Consensus 114 ~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 191 (768)
T 3rgz_A 114 GPVTTLTSLG-SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKIS 191 (768)
T ss_dssp EEGGGGGGGG-GCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEE
T ss_pred CcCCChHHHh-CCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCccc
Confidence 32221 1333 899999999999843332222223678999999999998 54433222 2567999999999998655
Q ss_pred ChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhh
Q 006015 190 GDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLG 269 (664)
Q Consensus 190 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 269 (664)
+..+. ..+++|++|++++|.+.+..+. ++++++|++|++++|...+..+ ..+.. +++|++|++++|.......
T Consensus 192 ~~~~~----~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~-l~~L~~L~Ls~n~l~~~~~ 264 (768)
T 3rgz_A 192 GDVDV----SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS-RAIST-CTELKLLNISSNQFVGPIP 264 (768)
T ss_dssp SCCBC----TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH-HHTTT-CSSCCEEECCSSCCEESCC
T ss_pred ccCCc----ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc-HHHhc-CCCCCEEECCCCcccCccC
Confidence 44433 4889999999999999876666 8999999999999988765433 35666 9999999999987543211
Q ss_pred HHHHHhccCCCcEeecCCCCCCcHhHHHHhhcC-CCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHH
Q 006015 270 LSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKL-SMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSY 348 (664)
Q Consensus 270 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 348 (664)
. ..+++|+.|+++++ .+.+..+..+... ++|++|++++|.+.+..+..+. .+++|++|++++|. +...--..
T Consensus 265 --~--~~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~-l~~~ip~~ 337 (768)
T 3rgz_A 265 --P--LPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNN-FSGELPMD 337 (768)
T ss_dssp --C--CCCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSE-EEEECCHH
T ss_pred --c--cccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCc-ccCcCCHH
Confidence 1 16789999999998 6666667777664 9999999999988776666777 78999999999986 32111223
Q ss_pred HHhhCCCccEEecCCCCCCChHHHHHHHhcCC-CCcEEEcCCCCCCCHHHHHHHH-hhCCCCCEEEccCCCCChhhHHhh
Q 006015 349 VATKHRDLRKLDITCCRKISDVSITHVTSSCT-GLTSLRMESCTLVPREAFVLIG-QRCRFLEELDLTDNEIDDEGLKSI 426 (664)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l 426 (664)
.+..+++|++|++++|..... ++..+..++ +|+.|++++|... ...+..+. ..+++|++|++++|.+.+..+..+
T Consensus 338 ~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~~L~~L~Ls~N~l~-~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 338 TLLKMRGLKVLDLSFNEFSGE--LPESLTNLSASLLTLDLSSNNFS-GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp HHTTCTTCCEEECCSSEEEEC--CCTTHHHHTTTCSEEECCSSEEE-EECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred HHhcCCCCCEEeCcCCccCcc--ccHHHHhhhcCCcEEEccCCCcC-CCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 467899999999999863211 112223444 9999999997652 11122222 126789999999999998888999
Q ss_pred ccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcC
Q 006015 427 SRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKC 506 (664)
Q Consensus 427 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 506 (664)
.++++|+.|++++| .++...+..+. .+++|+.|++++|. ++. .++..+..+++|++|++++|. +++..+..+..+
T Consensus 415 ~~l~~L~~L~Ls~N-~l~~~~p~~l~-~l~~L~~L~L~~n~-l~~-~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l 489 (768)
T 3rgz_A 415 SNCSELVSLHLSFN-YLSGTIPSSLG-SLSKLRDLKLWLNM-LEG-EIPQELMYVKTLETLILDFND-LTGEIPSGLSNC 489 (768)
T ss_dssp GGCTTCCEEECCSS-EEESCCCGGGG-GCTTCCEEECCSSC-CCS-CCCGGGGGCTTCCEEECCSSC-CCSCCCGGGGGC
T ss_pred hcCCCCCEEECcCC-cccCcccHHHh-cCCCCCEEECCCCc-ccC-cCCHHHcCCCCceEEEecCCc-ccCcCCHHHhcC
Confidence 99999999999999 88765555555 78999999999998 542 344556778999999999998 888888889999
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHH-HHhcCcccCeeeeccCCCChhHHHHhhC----
Q 006015 507 SRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLP-LAHFSQNLRQINLSYTSVTDVGLLSLAS---- 581 (664)
Q Consensus 507 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~l~~---- 581 (664)
++|++|++++| .++.. ++..+..+++|++|++++|+. . +..| ....+++|+.|++++|++++.+|..+..
T Consensus 490 ~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N~l-~--~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 490 TNLNWISLSNN-RLTGE-IPKWIGRLENLAILKLSNNSF-S--GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp TTCCEEECCSS-CCCSC-CCGGGGGCTTCCEEECCSSCC-E--EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred CCCCEEEccCC-ccCCc-CChHHhcCCCCCEEECCCCcc-c--CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 99999999999 45432 677788999999999999954 2 2222 2334899999999999988777655432
Q ss_pred ---------------------------------------------------------------CcccccceeeccCCCCH
Q 006015 582 ---------------------------------------------------------------ISCLQNMTILHLKGLSL 598 (664)
Q Consensus 582 ---------------------------------------------------------------~~~L~~L~~l~l~~n~~ 598 (664)
+..++.|+.+++++|.+
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 33456788999999999
Q ss_pred HH-HHHHHHhCCcccceeee-hhhcccCChhHHHHHHhcceEEEeeccc
Q 006015 599 NG-LAAALLACGGITKVKLQ-AAFKQLLPQPLIDHLQARGCVFQWRNKV 645 (664)
Q Consensus 599 ~~-~~~~~~~~~~L~~l~l~-n~~~~~~p~~~~~~~~~~~~~~~~~~~~ 645 (664)
++ +|..+.+++.|+.|+|+ |.+.+.+|..+.....+...++++|...
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 85 56666779999999999 9999999998877777888888887765
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.2e-42 Score=373.18 Aligned_cols=566 Identities=16% Similarity=0.128 Sum_probs=389.4
Q ss_pred HHHhhCCCCcEeeccCCCCCChhHHHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHH
Q 006015 66 AVLIRYSNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAA 145 (664)
Q Consensus 66 ~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 145 (664)
..+..+++|+.|+++++ .+.......+. .+++|++|++++|.... .+...+. .+++|++|++++| .+....+..
T Consensus 43 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~L~~n~l~~-l~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~ 116 (680)
T 1ziw_A 43 ANFTRYSQLTSLDVGFN-TISKLEPELCQ--KLPMLKVLNLQHNELSQ-LSDKTFA-FCTNLTELHLMSN-SIQKIKNNP 116 (680)
T ss_dssp GGGGGGTTCSEEECCSS-CCCCCCTTHHH--HCTTCCEEECCSSCCCC-CCTTTTT-TCTTCSEEECCSS-CCCCCCSCT
T ss_pred HHHhCCCcCcEEECCCC-ccCccCHHHHh--cccCcCEEECCCCccCc-cChhhhc-cCCCCCEEECCCC-ccCccChhH
Confidence 34677788888888864 34433333333 56788888888875332 2211222 6788888888887 455544456
Q ss_pred HHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHH-HHcCCcCcEEeccCCCCCCchhhhhcc
Q 006015 146 LAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLI-AVKCKEIRSLDLSYLPITNKCLPSILK 224 (664)
Q Consensus 146 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~l~~ 224 (664)
+..+++|++|++++|. ++... ...+..+++|++|++++|. +...+...+ ...+++|+.|++++|.+++..+..+..
T Consensus 117 ~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNG-LSSTK-LGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp TTTCTTCCEEECCSSC-CSCCC-CCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred ccccCCCCEEECCCCc-ccccC-chhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 7778888888888876 33322 1122357888888888874 333333322 125678888888888888777778888
Q ss_pred CCCcceEeccCCCCCCHHHHHHHHH--cCCCCCEEeccCCCCcChhhHHHHHhcc--CCCcEeecCCCCCCcHhHHHHhh
Q 006015 225 LQHLEDLILEGCFGIDDCSLAALKH--RCKSLKALDMSSCQNISHLGLSSLTSSI--GGLQQLTLAHGSPVTLSIANGLK 300 (664)
Q Consensus 225 l~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~ 300 (664)
+++|+.|.+.++..... ....+.. ..++|+.|++++|..... .+..+..+ ++|+.|+++++ .+....+..+.
T Consensus 194 l~~L~~L~l~~~~l~~~-~~~~~~~~l~~~~L~~L~L~~n~l~~~--~~~~~~~l~~~~L~~L~Ls~n-~l~~~~~~~~~ 269 (680)
T 1ziw_A 194 IGRLFGLFLNNVQLGPS-LTEKLCLELANTSIRNLSLSNSQLSTT--SNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFA 269 (680)
T ss_dssp SSEECEEECTTCCCHHH-HHHHHHHHHTTSCCCEEECTTSCCCEE--CTTTTGGGGGSCCCEEECTTS-CCCEECTTTTT
T ss_pred hhhhhhhhccccccChh-hHHHHHHHhhhccccEEEccCCccccc--ChhHhhccCcCCCCEEECCCC-CcCccCccccc
Confidence 88888888887654322 2222211 158899999998864332 12234444 45999999998 67766677889
Q ss_pred cCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCch---hHH----HHHhhCCCccEEecCCCCCCChHHHH
Q 006015 301 KLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDE---GLS----YVATKHRDLRKLDITCCRKISDVSIT 373 (664)
Q Consensus 301 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~---~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~ 373 (664)
.+++|+.|++++|.+....+..+. .+++|+.|++.++...... .++ ..+..+++|++|++++|.. ... .+
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l-~~~-~~ 346 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI-PGI-KS 346 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB-CCC-CT
T ss_pred CcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc-CCC-Ch
Confidence 999999999999988776666666 7899999999875311100 011 1346789999999998863 322 22
Q ss_pred HHHhcCCCCcEEEcCCCCC----CCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHH
Q 006015 374 HVTSSCTGLTSLRMESCTL----VPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLA 449 (664)
Q Consensus 374 ~~~~~~~~L~~L~l~~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~ 449 (664)
..+..+++|++|++++|.. ++...+..+ ..++|+.|++++|.+....+..+..+++|+.|++++| .++.....
T Consensus 347 ~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 423 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN-EIGQELTG 423 (680)
T ss_dssp TTTTTCTTCCEEECTTCBSCCCEECTTTTGGG--TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCEEECCS
T ss_pred hHhccccCCcEEECCCCchhhhhcchhhhccc--ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC-cCccccCc
Confidence 3356789999999998753 111111111 2368999999999999988889999999999999999 77653332
Q ss_pred HHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCC--HHHHHhhhcCCCCCEEEccCCCCCCHHHHHH
Q 006015 450 HVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDIT--DSSLLSLSKCSRLNTFESRGCPLITSLGLAA 527 (664)
Q Consensus 450 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~ 527 (664)
.....+++|++|++++|. ++. .....+..+++|++|++++|. ++ +..+..+..+++|+.|++++| .++.. .+.
T Consensus 424 ~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i-~~~ 498 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNK-YLQ-LTRNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNN-NIANI-NDD 498 (680)
T ss_dssp GGGTTCTTCCEEECCSCS-EEE-CCTTTTTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSS-CCCCC-CTT
T ss_pred ccccCcccccEEecCCCC-cce-eChhhhhcCcccccchhcccc-ccccccCCcccccCCCCCEEECCCC-CCCcC-Chh
Confidence 223479999999999997 432 122344578999999999987 54 334566888999999999999 55542 345
Q ss_pred HHhcCCcCcEEeccCccccChhhHH-------HHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHH
Q 006015 528 IAVGCKQLIKLDIKWCHNINDVGML-------PLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNG 600 (664)
Q Consensus 528 ~~~~~~~L~~L~l~~~~~i~~~~~~-------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~ 600 (664)
.+.++++|++|++++|+ ++..... .....+++|+.|++++|+++...+.. +..+++|+.+++++|.++.
T Consensus 499 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~---~~~l~~L~~L~Ls~N~l~~ 574 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV---FKDLFELKIIDLGLNNLNT 574 (680)
T ss_dssp TTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCCC
T ss_pred hhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH---cccccCcceeECCCCCCCc
Confidence 57789999999999994 4332110 11344799999999999998643322 5667777899999999999
Q ss_pred HHHHHHh-CCcccceeee-hhhcccCChhHH-HHHHhcceEEEeecccccccC-Cc-ccccccc
Q 006015 601 LAAALLA-CGGITKVKLQ-AAFKQLLPQPLI-DHLQARGCVFQWRNKVFQAEL-DP-KSWKLLL 659 (664)
Q Consensus 601 ~~~~~~~-~~~L~~l~l~-n~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 659 (664)
+++..+. +++|+.|+++ |.+.+..|..+. ....+...++..|+..|+|.. .. ..|....
T Consensus 575 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~ 638 (680)
T 1ziw_A 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET 638 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC
T ss_pred CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhc
Confidence 9888765 9999999999 888854444333 344567777777777776653 22 4465443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.8e-41 Score=360.56 Aligned_cols=516 Identities=17% Similarity=0.158 Sum_probs=306.8
Q ss_pred CcEeeccCCCCCChhHHHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCc
Q 006015 74 TTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLE 153 (664)
Q Consensus 74 l~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 153 (664)
++.|+++++ .+.......+. .+++|++|++++|.... .....+. .+++|++|++++| .+....+..+..+++|+
T Consensus 35 l~~L~Ls~n-~i~~~~~~~~~--~l~~L~~L~Ls~n~i~~-~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 108 (606)
T 3t6q_A 35 TECLEFSFN-VLPTIQNTTFS--RLINLTFLDLTRCQIYW-IHEDTFQ-SQHRLDTLVLTAN-PLIFMAETALSGPKALK 108 (606)
T ss_dssp CCEEECTTC-CCSEECTTTST--TCTTCSEEECTTCCCCE-ECTTTTT-TCTTCCEEECTTC-CCSEECTTTTSSCTTCC
T ss_pred CcEEEccCC-ccCcCChhHhc--cCccceEEECCCCccce-eChhhcc-CccccCeeeCCCC-cccccChhhhccccccc
Confidence 555555542 33322221122 44555555555554221 1111111 4555555555555 33333334455555555
Q ss_pred EEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcc--eE
Q 006015 154 KLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLE--DL 231 (664)
Q Consensus 154 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~--~L 231 (664)
+|++++|. ++...... +..+++|++|++++|. +...+...+ ..+++|+.|++++|.+++..+..++.+++|+ .|
T Consensus 109 ~L~L~~n~-i~~l~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L 184 (606)
T 3t6q_A 109 HLFFIQTG-ISSIDFIP-LHNQKTLESLYLGSNH-ISSIKLPKG-FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184 (606)
T ss_dssp EEECTTSC-CSCGGGSC-CTTCTTCCEEECCSSC-CCCCCCCTT-CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEE
T ss_pred EeeccccC-cccCCcch-hccCCcccEEECCCCc-ccccCcccc-cCCcccCEEEcccCcccccChhhhhhhcccceeEE
Confidence 55555554 33221111 2335555555555552 222111111 1355555555555555544455555555555 55
Q ss_pred eccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeec--CCCC-----CCcHhHHHHhhcCCC
Q 006015 232 ILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTL--AHGS-----PVTLSIANGLKKLSM 304 (664)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~-----~~~~~~~~~l~~l~~ 304 (664)
++++|......+. .+ . ..+|++|++++|.. ++..+..+.++....+ .... .+.......+... +
T Consensus 185 ~l~~n~l~~~~~~-~~-~-~~~L~~L~l~~~~~-----~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~-~ 255 (606)
T 3t6q_A 185 NLNGNDIAGIEPG-AF-D-SAVFQSLNFGGTQN-----LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-S 255 (606)
T ss_dssp ECTTCCCCEECTT-TT-T-TCEEEEEECTTCSC-----HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS-E
T ss_pred ecCCCccCccChh-Hh-h-hccccccccCCchh-----HHHHhhhccccchhheechhhccccccccChhHhchhhcC-c
Confidence 5555443322111 11 1 34555555555441 2333334443332222 1110 1111122222222 7
Q ss_pred ccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcE
Q 006015 305 LQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTS 384 (664)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (664)
|+.|+++++.+.......+. .+++|++|+++++. ++ .++..+..+++|++|++++|.. ... .+..+..+++|+.
T Consensus 256 L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~-l~--~lp~~l~~l~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFH-CFSGLQELDLTATH-LS--ELPSGLVGLSTLKKLVLSANKF-ENL-CQISASNFPSLTH 329 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTT-TCTTCSEEECTTSC-CS--CCCSSCCSCTTCCEEECTTCCC-SBG-GGGCGGGCTTCSE
T ss_pred eeEEEeecCccCccCHHHhc-cccCCCEEeccCCc-cC--CCChhhcccccCCEEECccCCc-CcC-chhhhhccCcCCE
Confidence 88899998887665555555 68899999999886 43 3444456788999999998874 322 2234567889999
Q ss_pred EEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhh--HHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEE
Q 006015 385 LRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEG--LKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELD 462 (664)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 462 (664)
|++++|..........+ ..+++|++|++++|.+.... +..+..+++|+.|++++| .+.......+. .+++|++|+
T Consensus 330 L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~ 406 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCL-ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFK-ECPQLELLD 406 (606)
T ss_dssp EECCSCSSCCBCCSSTT-TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTTTT-TCTTCSEEE
T ss_pred EECCCCCcccccchhhh-hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHHhc-CCccCCeEE
Confidence 99988764321111112 27889999999998888765 567888899999999998 77665444444 788999999
Q ss_pred cCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHH--HHHHhcCCcCcEEec
Q 006015 463 LYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGL--AAIAVGCKQLIKLDI 540 (664)
Q Consensus 463 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l 540 (664)
+++|. ++.......+..+++|++|++++|. ++...+..+..+++|++|++++| .+++..+ +..+..+++|++|++
T Consensus 407 l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 407 LAFTR-LKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp CTTCC-EECCTTCCTTTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEEC
T ss_pred CCCCc-CCCcccchhhhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEEC
Confidence 99887 4322223335678899999999987 77777777888999999999998 4433111 134668899999999
Q ss_pred cCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHH-hCCcccceeee-h
Q 006015 541 KWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALL-ACGGITKVKLQ-A 618 (664)
Q Consensus 541 ~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l~-n 618 (664)
++| .++..... ....+++|+.|++++|++++..|..+ .+++.| .+++++|.++++++..+ .+++|+.++++ |
T Consensus 484 s~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l---~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 484 SFC-DLSSIDQH-AFTSLKMMNHVDLSHNRLTSSSIEAL---SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp TTS-CCCEECTT-TTTTCTTCCEEECCSSCCCGGGGGGG---TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred CCC-ccCccChh-hhccccCCCEEECCCCccCcCChhHh---Cccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence 998 44432211 22347899999999999988776554 455666 78889999888766544 48899999999 8
Q ss_pred hhcccCCh
Q 006015 619 AFKQLLPQ 626 (664)
Q Consensus 619 ~~~~~~p~ 626 (664)
++.+..+.
T Consensus 558 ~~~c~c~~ 565 (606)
T 3t6q_A 558 PLDCTCSN 565 (606)
T ss_dssp CEECSGGG
T ss_pred CccccCCc
Confidence 88766664
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5e-39 Score=351.16 Aligned_cols=546 Identities=15% Similarity=0.093 Sum_probs=329.5
Q ss_pred CCCcEeeccCCCCCChhHHHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCC
Q 006015 72 SNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKN 151 (664)
Q Consensus 72 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 151 (664)
++++.|+++++ .+.......+. .+++|++|++++|..... ....+. .+++|++|++++| .+.......+..+++
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~-~~~~~~-~l~~L~~L~L~~n-~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAANFT--RYSQLTSLDVGFNTISKL-EPELCQ-KLPMLKVLNLQHN-ELSQLSDKTFAFCTN 98 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGGGG--GGTTCSEEECCSSCCCCC-CTTHHH-HCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred CCCcEEECCCC-CCCCcCHHHHh--CCCcCcEEECCCCccCcc-CHHHHh-cccCcCEEECCCC-ccCccChhhhccCCC
Confidence 34666666653 33322222222 456666666666643222 112222 5666666666666 344433334566666
Q ss_pred CcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhc--cCCCcc
Q 006015 152 LEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSIL--KLQHLE 229 (664)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~--~l~~L~ 229 (664)
|++|++++|. ++... +..+..+++|++|++++|...+ .+...+ ..+++|++|++++|.+++..+..+. .+++|+
T Consensus 99 L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 99 LTELHLMSNS-IQKIK-NNPFVKQKNLITLDLSHNGLSS-TKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLK 174 (680)
T ss_dssp CSEEECCSSC-CCCCC-SCTTTTCTTCCEEECCSSCCSC-CCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred CCEEECCCCc-cCccC-hhHccccCCCCEEECCCCcccc-cCchhh-cccccCCEEEccCCcccccCHHHhhcccccccc
Confidence 6666666665 33221 1122346666666666663222 211111 2566666666666666655444443 346666
Q ss_pred eEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHH--hccCCCcEeecCCCCCCcHhHHHHhhcCCC--c
Q 006015 230 DLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLT--SSIGGLQQLTLAHGSPVTLSIANGLKKLSM--L 305 (664)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~--L 305 (664)
.|++++|...... ...+.. +++|+.+++.++.... ....... ...++|+.|+++++ .+.+..+..+..++. |
T Consensus 175 ~L~L~~n~l~~~~-~~~~~~-l~~L~~L~l~~~~l~~-~~~~~~~~~l~~~~L~~L~L~~n-~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 175 KLELSSNQIKEFS-PGCFHA-IGRLFGLFLNNVQLGP-SLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp EEECTTCCCCCBC-TTGGGG-SSEECEEECTTCCCHH-HHHHHHHHHHTTSCCCEEECTTS-CCCEECTTTTGGGGGSCC
T ss_pred EEECCCCcccccC-hhhhhh-hhhhhhhhccccccCh-hhHHHHHHHhhhccccEEEccCC-cccccChhHhhccCcCCC
Confidence 6666665443321 122333 5666666666554321 1111111 12367888888877 565555666666644 8
Q ss_pred cEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHH---H----HHHhc
Q 006015 306 QSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSI---T----HVTSS 378 (664)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~----~~~~~ 378 (664)
+.|++++|.+....+..+. .+++|++|+++++. +.. ..+..+..+++|+.|+++++........ + ..+..
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 251 TMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNN-IQH-LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CEEECTTSCCCEECTTTTT-TCTTCCEEECCSCC-BSE-ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CEEECCCCCcCccCccccc-CcccccEeeCCCCc-cCc-cChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 8888888877665555555 67888888888775 322 1233456778888888876542211110 0 12345
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChh--hHHhhcc--CCCccEEcccCCCCCChHhHHHHhhC
Q 006015 379 CTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDE--GLKSISR--CSKLSVLKLGICLNITGEGLAHVGMC 454 (664)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~--~~~L~~L~l~~~~~l~~~~~~~l~~~ 454 (664)
+++|++|++++|.... .....+ ..+++|++|++++|.+... ....+.. .++|+.|++++| .++......+. .
T Consensus 328 l~~L~~L~l~~n~l~~-~~~~~~-~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n-~l~~~~~~~~~-~ 403 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPG-IKSNMF-TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFS-W 403 (680)
T ss_dssp CTTCCEEECCSCCBCC-CCTTTT-TTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTS-CCCEECTTTTT-T
T ss_pred CCCCCEEECCCCccCC-CChhHh-ccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCC-CCCeEChhhhh-C
Confidence 7888888888766422 111122 2678888888887754321 1122222 357888888888 77765444444 7
Q ss_pred CCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCc
Q 006015 455 CSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQ 534 (664)
Q Consensus 455 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 534 (664)
+++|+.|++++|. ++.......+.++++|++|++++|. +++.....+..+++|+.|++++|..-....++..+.++++
T Consensus 404 l~~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 404 LGHLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp CTTCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred CCCCCEEeCCCCc-CccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 8999999999987 4321122345678999999999997 7777777788899999999999842111124556778999
Q ss_pred CcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHh-----hCCcccccceeeccCCCCHHHHHHHHHh-C
Q 006015 535 LIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSL-----ASISCLQNMTILHLKGLSLNGLAAALLA-C 608 (664)
Q Consensus 535 L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-----~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~ 608 (664)
|+.|++++|+ ++..... ....+++|++|++++|++++.....+ ..+..+++|+.+++++|.++.+|+..+. +
T Consensus 482 L~~L~Ls~N~-l~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 482 LTILDLSNNN-IANINDD-MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp CCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCEEECCCCC-CCcCChh-hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence 9999999994 4432211 12347999999999999887533222 1267788888999999999998876554 9
Q ss_pred Ccccceeee-hhhcccCChhHH-HHHHhcceEEEeec
Q 006015 609 GGITKVKLQ-AAFKQLLPQPLI-DHLQARGCVFQWRN 643 (664)
Q Consensus 609 ~~L~~l~l~-n~~~~~~p~~~~-~~~~~~~~~~~~~~ 643 (664)
++|+.|+++ |.+. .+|+... ....++..++..|.
T Consensus 560 ~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 560 FELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred cCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCc
Confidence 999999999 8888 5665533 33455666665553
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-39 Score=348.92 Aligned_cols=492 Identities=16% Similarity=0.088 Sum_probs=280.6
Q ss_pred cCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCC
Q 006015 98 SFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKN 177 (664)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (664)
.+++++|++++|... ......+. .+++|++|++++| .+....+..|..+++|++|++++|. ++... +..+..+++
T Consensus 31 ~~~l~~L~Ls~n~l~-~~~~~~~~-~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~-p~~~~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLK-ILKSYSFS-NFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP-IQSFS-PGSFSGLTS 105 (606)
T ss_dssp CTTCCEEECTTSCCC-EECTTTTT-TCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCCCC-TTSSTTCTT
T ss_pred CCCcCEEECCCCCcC-EeChhhcc-CCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc-ccccC-hhhcCCccc
Confidence 355666666666432 22111222 5666666666666 4444444455666666666666665 33221 222334666
Q ss_pred cceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCC-chhhhhccCCCcceEeccCCCCCCH--HHHHHHHHcCCC-
Q 006015 178 LKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITN-KCLPSILKLQHLEDLILEGCFGIDD--CSLAALKHRCKS- 253 (664)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~~~~~- 253 (664)
|++|++++|. +...+...+ ..+++|++|++++|.+.+ ..|..++++++|++|++++|..... ..+..+.. ++.
T Consensus 106 L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~~ 182 (606)
T 3vq2_A 106 LENLVAVETK-LASLESFPI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE-NPQV 182 (606)
T ss_dssp CCEEECTTSC-CCCSSSSCC-TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH-CTTC
T ss_pred CCEEEccCCc-ccccccccc-CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc-cccc
Confidence 6666666663 222221111 356666666666666654 3456666666666666666544321 11222222 322
Q ss_pred CCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEe-----------------------
Q 006015 254 LKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKL----------------------- 310 (664)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l----------------------- 310 (664)
+++|++++|..... +.......+|+.|+++++.......+..+.++++|+.+++
T Consensus 183 l~~L~l~~n~l~~~---~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~ 259 (606)
T 3vq2_A 183 NLSLDMSLNPIDFI---QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259 (606)
T ss_dssp CCEEECTTCCCCEE---CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred cceeeccCCCccee---CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence 44566666553221 1111122256666666652222445555555555555554
Q ss_pred ----------cCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCC
Q 006015 311 ----------DGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCT 380 (664)
Q Consensus 311 ----------~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (664)
..+.+.+..+. +. .+++|+.|++.++. +.. ++ .+..+++|++|++++|.. ... +.+ .++
T Consensus 260 ~l~l~~l~l~~~~~~~~~~~~-~~-~l~~L~~L~l~~~~-~~~--l~-~l~~~~~L~~L~l~~n~l-~~l--p~~--~l~ 328 (606)
T 3vq2_A 260 DVTIDEFRLTYTNDFSDDIVK-FH-CLANVSAMSLAGVS-IKY--LE-DVPKHFKWQSLSIIRCQL-KQF--PTL--DLP 328 (606)
T ss_dssp GSEEEEEEECCCTTCCGGGGS-CG-GGTTCSEEEEESCC-CCC--CC-CCCTTCCCSEEEEESCCC-SSC--CCC--CCS
T ss_pred hccHhheeccccccccccccc-cc-cCCCCCEEEecCcc-chh--hh-hccccccCCEEEcccccC-ccc--ccC--CCC
Confidence 33344444443 33 56777777777765 222 22 345667778888877764 332 222 677
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhh--HHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCC
Q 006015 381 GLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEG--LKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKL 458 (664)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 458 (664)
+|+.|++++|..+... .+. .+++|++|++++|.+.... +..+..+++|+.|++++| .++... ..+. .+++|
T Consensus 329 ~L~~L~l~~n~~~~~~---~~~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~-~l~~L 401 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF---KKV-ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMS-ANFM-GLEEL 401 (606)
T ss_dssp SCCEEEEESCSSCEEC---CCC-CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEEC-CCCT-TCTTC
T ss_pred ccceeeccCCcCccch---hhc-cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccch-hhcc-CCCCC
Confidence 7888888777543322 222 6777888888877776542 556667778888888877 555432 2222 57778
Q ss_pred cEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEE
Q 006015 459 KELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKL 538 (664)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (664)
+.|++++|. ++.......+..+++|++|++++|. +++..+..+..+++|++|++++| .+++..++..+.++++|++|
T Consensus 402 ~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 402 QHLDFQHST-LKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp CEEECTTSE-EESTTTTTTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEE
T ss_pred CeeECCCCc-cCCccChhhhhccccCCEEECcCCC-CCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEE
Confidence 888888776 3322111344567788888888876 66666666777788888888877 34331134456677788888
Q ss_pred eccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCC-cccceeee
Q 006015 539 DIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACG-GITKVKLQ 617 (664)
Q Consensus 539 ~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~-~L~~l~l~ 617 (664)
++++|+ ++..... ....+++|++|++++|++++..|..+ ..+++|+.+++++|.++.+|..+..++ +|+.++++
T Consensus 479 ~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 479 DLSKCQ-LEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHY---NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLT 553 (606)
T ss_dssp ECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGT---TTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECC
T ss_pred ECCCCc-CCccChh-hhcccccCCEEECCCCcCCCcCHHHc---cCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEcc
Confidence 888873 3322111 12336778888888888777665554 344455577777787777777655565 48888887
Q ss_pred -hhhcccCCh
Q 006015 618 -AAFKQLLPQ 626 (664)
Q Consensus 618 -n~~~~~~p~ 626 (664)
|++....+.
T Consensus 554 ~N~~~c~c~~ 563 (606)
T 3vq2_A 554 NNSVACICEH 563 (606)
T ss_dssp SCCCCCSSTT
T ss_pred CCCcccCCcc
Confidence 777655553
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-38 Score=343.49 Aligned_cols=527 Identities=15% Similarity=0.095 Sum_probs=373.2
Q ss_pred hhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhc
Q 006015 95 KITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVG 174 (664)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 174 (664)
....+.+++|++++|... ......+. .+++|++|++++| .+....+..|..+++|++|++++|. ++... +..+..
T Consensus 29 ~~l~~~l~~L~Ls~n~i~-~~~~~~~~-~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~ 103 (606)
T 3t6q_A 29 GTLPNSTECLEFSFNVLP-TIQNTTFS-RLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANP-LIFMA-ETALSG 103 (606)
T ss_dssp TTSCTTCCEEECTTCCCS-EECTTTST-TCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CSEEC-TTTTSS
T ss_pred CCCCCcCcEEEccCCccC-cCChhHhc-cCccceEEECCCC-ccceeChhhccCccccCeeeCCCCc-ccccC-hhhhcc
Confidence 334568999999999743 33222333 8899999999998 5666667788999999999999987 44332 233456
Q ss_pred CCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCC
Q 006015 175 CKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSL 254 (664)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (664)
+++|++|++++|. +...+...+ ..+++|++|++++|.+.+..++.+..+++|+.|++++|..... ....++. +++|
T Consensus 104 l~~L~~L~L~~n~-i~~l~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~-l~~L 179 (606)
T 3t6q_A 104 PKALKHLFFIQTG-ISSIDFIPL-HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL-SKEDMSS-LQQA 179 (606)
T ss_dssp CTTCCEEECTTSC-CSCGGGSCC-TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE-CHHHHHT-TTTC
T ss_pred cccccEeeccccC-cccCCcchh-ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc-Chhhhhh-hccc
Confidence 8999999999984 444322222 4889999999999988875555566699999999999876543 2334666 8999
Q ss_pred C--EEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCC--------ccCHhHHHHHH
Q 006015 255 K--ALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGS--------VVTRAGLKAIG 324 (664)
Q Consensus 255 ~--~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~--------~~~~~~~~~l~ 324 (664)
+ .|++++|..... ........+|+.|+++++. ..+..+..+.+++...+... .+.......+.
T Consensus 180 ~~l~L~l~~n~l~~~---~~~~~~~~~L~~L~l~~~~----~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGI---EPGAFDSAVFQSLNFGGTQ----NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp CSEEEECTTCCCCEE---CTTTTTTCEEEEEECTTCS----CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred ceeEEecCCCccCcc---ChhHhhhccccccccCCch----hHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 9 889988875432 1112334678999998883 33445555555544443322 12222222222
Q ss_pred hcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhh
Q 006015 325 DWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQR 404 (664)
Q Consensus 325 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 404 (664)
-.+|+.|+++++. +... ....+..+++|++|++++|.. +. ++..+..+++|++|++++|... ......+. .
T Consensus 253 --~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~l-~~--lp~~l~~l~~L~~L~l~~n~l~-~~~~~~~~-~ 323 (606)
T 3t6q_A 253 --EMSVESINLQKHY-FFNI-SSNTFHCFSGLQELDLTATHL-SE--LPSGLVGLSTLKKLVLSANKFE-NLCQISAS-N 323 (606)
T ss_dssp --GSEEEEEECTTCC-CSSC-CTTTTTTCTTCSEEECTTSCC-SC--CCSSCCSCTTCCEEECTTCCCS-BGGGGCGG-G
T ss_pred --cCceeEEEeecCc-cCcc-CHHHhccccCCCEEeccCCcc-CC--CChhhcccccCCEEECccCCcC-cCchhhhh-c
Confidence 1379999999986 3321 223357889999999999863 32 3334567899999999998753 22222333 8
Q ss_pred CCCCCEEEccCCCCChhhH-HhhccCCCccEEcccCCCCCChHh--HHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcC
Q 006015 405 CRFLEELDLTDNEIDDEGL-KSISRCSKLSVLKLGICLNITGEG--LAHVGMCCSKLKELDLYRCVGITDSGILTIACGC 481 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 481 (664)
+++|++|++++|.+....+ ..+..+++|+.|++++| .++... ...+. .+++|++|++++|. ++. ..+..+..+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~-~l~~L~~L~l~~n~-l~~-~~~~~~~~l 399 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLR-NLSHLQSLNLSYNE-PLS-LKTEAFKEC 399 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTTTT-TCTTCCEEECCSCS-CEE-ECTTTTTTC
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC-ccccccCcchhcc-cCCCCCEEECCCCc-CCc-CCHHHhcCC
Confidence 9999999999998874443 45888999999999999 887654 33344 78999999999997 442 233455678
Q ss_pred CCCCEEeccCCCCCCHHHH-HhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHH--HHHhcC
Q 006015 482 PDLEMINIAYLKDITDSSL-LSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGML--PLAHFS 558 (664)
Q Consensus 482 ~~L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~--~~~~~~ 558 (664)
++|++|++++|. +++..+ ..+..+++|+.|++++| .++.. .+..+.++++|++|++++|+ ++..... .....+
T Consensus 400 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l 475 (606)
T 3t6q_A 400 PQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHS-LLDIS-SEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTL 475 (606)
T ss_dssp TTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTC-CCBTT-CTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGC
T ss_pred ccCCeEECCCCc-CCCcccchhhhCcccCCEEECCCC-ccCCc-CHHHHhCCCCCCEEECCCCC-CCccccccchhhccC
Confidence 999999999998 665443 34788999999999999 45442 45567789999999999995 3332111 123458
Q ss_pred cccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCcccceeee-hhhcccCChhHHHHHHhcc
Q 006015 559 QNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGITKVKLQ-AAFKQLLPQPLIDHLQARG 636 (664)
Q Consensus 559 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~-n~~~~~~p~~~~~~~~~~~ 636 (664)
++|+.|++++|++++..|..+ .++++|+.+++++|.+++.++..+. ++.| .|+++ |.+.+..|..+.....+..
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAF---TSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred CCccEEECCCCccCccChhhh---ccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence 999999999999998776554 5566677999999999887665544 8999 99999 9999666665666666788
Q ss_pred eEEEeecccccccCCc-cccccc
Q 006015 637 CVFQWRNKVFQAELDP-KSWKLL 658 (664)
Q Consensus 637 ~~~~~~~~~~~~~~~~-~~~~~~ 658 (664)
.++..|+..|+|.... ..|..+
T Consensus 552 L~l~~N~~~c~c~~~~~~~w~~~ 574 (606)
T 3t6q_A 552 INLRQNPLDCTCSNIYFLEWYKE 574 (606)
T ss_dssp EECTTCCEECSGGGHHHHHHHHH
T ss_pred EeCCCCCccccCCcHHHHHHHHh
Confidence 8888887777775443 345543
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=1.3e-33 Score=303.61 Aligned_cols=470 Identities=16% Similarity=0.220 Sum_probs=325.1
Q ss_pred HHHhhCCCCcEEecccCcCCCh--------------HHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCC-cceEec
Q 006015 119 SLTLSCKNLKEIDISNAVSLKD--------------AGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKN-LKLISL 183 (664)
Q Consensus 119 ~l~~~~~~L~~L~l~~~~~~~~--------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l 183 (664)
.+...+++|++|++++|....+ ........+++|++|++++|. +++..+..+...+++ |++|++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEEC
Confidence 3444677788888766532211 111122245555555555553 554444444443444 555555
Q ss_pred cccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q 006015 184 KWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQ 263 (664)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (664)
.+|..+.......+...|++|++|++++|.+++.. ...+..+...+++|++|+++++.
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~----------------------~~~l~~~~~~~~~L~~L~L~~n~ 203 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD----------------------GKWLHELAQHNTSLEVLNFYMTE 203 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC----------------------SHHHHHHHHHCCCCCEEECTTCC
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc----------------------hhHHHHHHhcCCCccEEEeeccC
Confidence 55543333333333345555555555554433221 11122233337888888887766
Q ss_pred Cc--ChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccC---HhHHHHHHhcCCCccEEEcCCC
Q 006015 264 NI--SHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVT---RAGLKAIGDWCVSLKELSLSKC 338 (664)
Q Consensus 264 ~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~---~~~~~~l~~~~~~L~~L~l~~~ 338 (664)
.. ....++..+..+++|+.|+++++ .+. ..+..+..+++|+.|+++..... ......+. .+++|+.|.+.++
T Consensus 204 ~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~ 280 (592)
T 3ogk_B 204 FAKISPKDLETIARNCRSLVSVKVGDF-EIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV-FPRKLCRLGLSYM 280 (592)
T ss_dssp CSSCCHHHHHHHHHHCTTCCEEECSSC-BGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC-CCTTCCEEEETTC
T ss_pred CCccCHHHHHHHHhhCCCCcEEeccCc-cHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhh-ccccccccCcccc
Confidence 43 44567777888899999999887 444 36788999999999999854221 11122233 6789999999875
Q ss_pred CCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEcc----
Q 006015 339 DGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLT---- 414 (664)
Q Consensus 339 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~---- 414 (664)
. ...++..+..+++|++|++++|. +++..+...+..+++|+.|++. ..+.+..+..+...+++|++|+++
T Consensus 281 ~---~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~l~~~~~~~~~L~~L~L~~g~~ 354 (592)
T 3ogk_B 281 G---PNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGAD 354 (592)
T ss_dssp C---TTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHHHHHHHHHCTTCCEEEEECCCC
T ss_pred c---hhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHHHHHHHHhCCCCCEEEeecCcc
Confidence 3 33566677889999999999998 7877777778899999999998 345677888888799999999999
Q ss_pred -------CCCCChhhHHhhc-cCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCC---CCCCCh----HHHHHHHh
Q 006015 415 -------DNEIDDEGLKSIS-RCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYR---CVGITD----SGILTIAC 479 (664)
Q Consensus 415 -------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~---~~~~~~----~~~~~~~~ 479 (664)
.+.+++.....+. .+++|++|+++.+ .+++..+..+...+++|+.|++++ |..+++ .++..++.
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~ 433 (592)
T 3ogk_B 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433 (592)
T ss_dssp SSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH
T ss_pred ccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH
Confidence 3578877666644 5999999999777 999999999987799999999973 556775 57888899
Q ss_pred cCCCCCEEeccCCC-CCCHHHHHhhhc-CCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhc
Q 006015 480 GCPDLEMINIAYLK-DITDSSLLSLSK-CSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHF 557 (664)
Q Consensus 480 ~~~~L~~L~l~~~~-~l~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~ 557 (664)
+|++|++|++++|. .+++..+..+.. +++|++|++++| .+++.+++..+.++++|++|++++|+ +++.+.......
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~ 511 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK 511 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence 99999999998765 378888887775 899999999999 68888889999999999999999996 788777777777
Q ss_pred CcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHH-HHH-HHhCCcccceeeehhhcccCC
Q 006015 558 SQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGL-AAA-LLACGGITKVKLQAAFKQLLP 625 (664)
Q Consensus 558 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~-~~~-~~~~~~L~~l~l~n~~~~~~p 625 (664)
+++|++|++++|++++.+...++ ..++.+.+..+..+..... +.+ .......+.+...+.+.|..|
T Consensus 512 l~~L~~L~ls~n~it~~~~~~l~--~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 579 (592)
T 3ogk_B 512 LPSLRYLWVQGYRASMTGQDLMQ--MARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLAGQRT 579 (592)
T ss_dssp CSSCCEEEEESCBCCTTCTTGGG--GCCTTEEEEEECCC---------------CCCEEEEEECTTCSCS
T ss_pred cCccCeeECcCCcCCHHHHHHHH--HhCCCcEEEEecCccccccccccCCcCCcchhheEeeeecCCCcc
Confidence 99999999999999987765553 2344555555554422222 111 122456777776766666543
No 11
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2.2e-33 Score=302.06 Aligned_cols=407 Identities=23% Similarity=0.334 Sum_probs=278.8
Q ss_pred HcCCcCcEEeccCCCCCCchhhhhc-cCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcC--hhhHHHHHh
Q 006015 199 VKCKEIRSLDLSYLPITNKCLPSIL-KLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNIS--HLGLSSLTS 275 (664)
Q Consensus 199 ~~~~~L~~L~l~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~ 275 (664)
..+++|++|+++++.+++..+..+. .+++|++|++.+|...++..+..+...+++|++|++++|.... ...+.....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 3455555555555555544444444 3556666666655444444444444336777777776665221 112333334
Q ss_pred ccCCCcEeecCCCC-CCcHh-HHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCC-CCch---hHHHH
Q 006015 276 SIGGLQQLTLAHGS-PVTLS-IANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDG-VTDE---GLSYV 349 (664)
Q Consensus 276 ~~~~L~~L~l~~~~-~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~---~~~~~ 349 (664)
.+++|+.|+++++. .+... ....+..+++|+.|+++++......+..+. .+++|++|.+..+.. +... .+...
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQ-RAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHH-HCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHh-cCCcceEcccccccCccchhhHHHHHHH
Confidence 56677777777663 23322 333345577888888877733233333444 778888888776542 2221 24445
Q ss_pred HhhCCCccEE-ecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhc-
Q 006015 350 ATKHRDLRKL-DITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSIS- 427 (664)
Q Consensus 350 ~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~- 427 (664)
+.++++|+.+ .+.+ .....++.....+++|++|++++|. +++..+..+...+++|++|+++++ +.+.....+.
T Consensus 261 l~~~~~L~~Ls~~~~---~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~ 335 (594)
T 2p1m_B 261 LSGCKELRCLSGFWD---AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS 335 (594)
T ss_dssp HHTCTTCCEEECCBT---CCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred HhcCCCcccccCCcc---cchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence 6889999999 4443 3344455555678999999999988 778888877779999999999988 6665555555
Q ss_pred cCCCccEEcc--------cCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEecc-----CCCC
Q 006015 428 RCSKLSVLKL--------GICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIA-----YLKD 494 (664)
Q Consensus 428 ~~~~L~~L~l--------~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~ 494 (664)
.+++|+.|++ .++..+++.++..+...+++|++|.+..+ .+++.++..+...+++|++|+++ +|..
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~-~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR-QMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES-CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC-CcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 4899999999 33448999888888878999999977644 59988888888889999999999 5666
Q ss_pred CC----HHHHHh-hhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccC
Q 006015 495 IT----DSSLLS-LSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYT 569 (664)
Q Consensus 495 l~----~~~~~~-l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n 569 (664)
++ +..... +..+++|+.|++++ .+++.++......+++|+.|++++| .+++.+...+...+++|+.|++++|
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-CSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-CCcHHHHHHHHhcCCCcCEEECcCC
Confidence 87 444433 56799999999977 7888777777777999999999999 5788888777677999999999999
Q ss_pred CCChhHHHHhhCCcccccceeeccCCCCHHH--HHHHHHhCCcccceeee
Q 006015 570 SVTDVGLLSLASISCLQNMTILHLKGLSLNG--LAAALLACGGITKVKLQ 617 (664)
Q Consensus 570 ~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~--~~~~~~~~~~L~~l~l~ 617 (664)
.+++.++..+. ..+++|+.+++++|.++. +......+|.|+...+.
T Consensus 492 ~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~ 539 (594)
T 2p1m_B 492 PFGDKALLANA--SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVID 539 (594)
T ss_dssp SCCHHHHHHTG--GGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEEC
T ss_pred CCcHHHHHHHH--HhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEec
Confidence 99887766543 334555566666666543 32222348888766665
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-38 Score=341.15 Aligned_cols=501 Identities=15% Similarity=0.083 Sum_probs=361.4
Q ss_pred CCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCc
Q 006015 124 CKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKE 203 (664)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (664)
.+++++|++++| .+.......+..+++|++|++++|. ++... +..+..+++|++|++++|. +...+...+ .++++
T Consensus 31 ~~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~-~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~-~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCE-IETIE-DKAWHGLHHLSNLILTGNP-IQSFSPGSF-SGLTS 105 (606)
T ss_dssp CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCEEC-TTTTTTCTTCCEEECTTCC-CCCCCTTSS-TTCTT
T ss_pred CCCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCc-ccccC-HHHhhchhhcCEeECCCCc-ccccChhhc-CCccc
Confidence 378999999998 5666666688999999999999997 55432 3334569999999999994 444433333 58999
Q ss_pred CcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcCh--hhHHHHHhccCC-C
Q 006015 204 IRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISH--LGLSSLTSSIGG-L 280 (664)
Q Consensus 204 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~-L 280 (664)
|++|++++|.+.+..+..++++++|++|++++|..........++. +++|++|++++|..... ..+. .+..++. +
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~~l 183 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN-LTNLVHVDLSYNYIQTITVNDLQ-FLRENPQVN 183 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGT-CTTCCEEECCSSCCCEECTTTTH-HHHHCTTCC
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhh-cCCCCEEEccCCcceecChhhhh-hhhcccccc
Confidence 9999999999987777789999999999999987654221224666 99999999999874432 1111 1223333 5
Q ss_pred cEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCC-----------------------
Q 006015 281 QQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSK----------------------- 337 (664)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~----------------------- 337 (664)
+.++++++ .+....+..+.. .+|+.|+++++.+...........+++++.+.+..
T Consensus 184 ~~L~l~~n-~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l 261 (606)
T 3vq2_A 184 LSLDMSLN-PIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261 (606)
T ss_dssp CEEECTTC-CCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred ceeeccCC-CcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence 68999998 565444444444 48999999999887544443333788887766531
Q ss_pred ---------CCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCC
Q 006015 338 ---------CDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFL 408 (664)
Q Consensus 338 ---------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (664)
...+.. ..+. +..+++|+.|+++++.. ... + .+..+++|+.|++++|.. .. +..+ .+++|
T Consensus 262 ~l~~l~l~~~~~~~~-~~~~-~~~l~~L~~L~l~~~~~-~~l--~-~l~~~~~L~~L~l~~n~l-~~--lp~~--~l~~L 330 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSD-DIVK-FHCLANVSAMSLAGVSI-KYL--E-DVPKHFKWQSLSIIRCQL-KQ--FPTL--DLPFL 330 (606)
T ss_dssp EEEEEEECCCTTCCG-GGGS-CGGGTTCSEEEEESCCC-CCC--C-CCCTTCCCSEEEEESCCC-SS--CCCC--CCSSC
T ss_pred cHhheeccccccccc-cccc-cccCCCCCEEEecCccc-hhh--h-hccccccCCEEEcccccC-cc--cccC--CCCcc
Confidence 111221 1222 56788999999998874 332 2 345678999999999876 21 1122 78899
Q ss_pred CEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHh--HHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCE
Q 006015 409 EELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEG--LAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEM 486 (664)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (664)
++|+++++...... .+..+++|+.|++++| .++... ...+. .+++|++|++++|. ++. ++..+..+++|++
T Consensus 331 ~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~-~~~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 331 KSLTLTMNKGSISF--KKVALPSLSYLDLSRN-ALSFSGCCSYSDL-GTNSLRHLDLSFNG-AII--MSANFMGLEELQH 403 (606)
T ss_dssp CEEEEESCSSCEEC--CCCCCTTCCEEECCSS-CEEEEEECCHHHH-CCSCCCEEECCSCS-EEE--ECCCCTTCTTCCE
T ss_pred ceeeccCCcCccch--hhccCCCCCEEECcCC-ccCCCcchhhhhc-cCCcccEeECCCCc-ccc--chhhccCCCCCCe
Confidence 99999998555433 6678999999999999 877643 34444 79999999999997 542 3345567899999
Q ss_pred EeccCCCCCCHHHH-HhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeee
Q 006015 487 INIAYLKDITDSSL-LSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQIN 565 (664)
Q Consensus 487 L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~ 565 (664)
|++++|. +.+..+ ..+..+++|+.|++++|. ++.. .+..+.++++|++|++++|+ ++..........+++|+.|+
T Consensus 404 L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 404 LDFQHST-LKRVTEFSAFLSLEKLLYLDISYTN-TKID-FDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp EECTTSE-EESTTTTTTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEE
T ss_pred eECCCCc-cCCccChhhhhccccCCEEECcCCC-CCcc-chhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEE
Confidence 9999998 666554 678889999999999994 4432 45567789999999999994 33211122233579999999
Q ss_pred eccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHH-HHHhCCcccceeee-hhhcccCChhHHHHH-HhcceEEEee
Q 006015 566 LSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAA-ALLACGGITKVKLQ-AAFKQLLPQPLIDHL-QARGCVFQWR 642 (664)
Q Consensus 566 l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~-~~~~~~~L~~l~l~-n~~~~~~p~~~~~~~-~~~~~~~~~~ 642 (664)
+++|++++..+.. +.++++|+.+++++|.++++++ .+.++++|+.|+++ |.+. .+|..+.... .+...++..|
T Consensus 480 Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 480 LSKCQLEQISWGV---FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CTTSCCCEECTTT---TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSC
T ss_pred CCCCcCCccChhh---hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCC
Confidence 9999999877655 4556677799999999998744 45559999999999 8888 7787644443 3677788877
Q ss_pred cccccccCCc-ccccccc
Q 006015 643 NKVFQAELDP-KSWKLLL 659 (664)
Q Consensus 643 ~~~~~~~~~~-~~~~~~~ 659 (664)
+..|.|.... ..|..+.
T Consensus 556 ~~~c~c~~~~~~~~l~~~ 573 (606)
T 3vq2_A 556 SVACICEHQKFLQWVKEQ 573 (606)
T ss_dssp CCCCSSTTHHHHTTTTTS
T ss_pred CcccCCccHHHHHHHHcC
Confidence 7777665543 4565543
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.8e-35 Score=313.37 Aligned_cols=476 Identities=13% Similarity=0.115 Sum_probs=274.0
Q ss_pred ccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCC
Q 006015 97 TSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCK 176 (664)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (664)
..++|++|++++|... ......+ ..+++|++|++++| .+....+..+..+++|++|++++|. ++... +..+..++
T Consensus 24 ~~~~L~~L~Ls~n~l~-~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNKIT-YIGHGDL-RACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLS-SSWFGPLS 98 (549)
T ss_dssp CCTTCCEEECCSSCCC-EECSSTT-SSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCC-HHHHTTCT
T ss_pred CCCCccEEECcCCccC-ccChhhh-hcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccC-HHHhccCC
Confidence 3467888888877532 2221222 26777888888777 4555555566777777777777776 44433 33344577
Q ss_pred CcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchh-hhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCC
Q 006015 177 NLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCL-PSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLK 255 (664)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (664)
+|++|++++|. +...+.......+++|++|++++|.+.+..+ ..+.++++|++|++++|...+.. ...+.. +++|+
T Consensus 99 ~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~-l~~L~ 175 (549)
T 2z81_A 99 SLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKS-IRDIH 175 (549)
T ss_dssp TCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTT-CSEEE
T ss_pred CCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-hhhhhc-cccCc
Confidence 77777777773 3221110011366777777777775333333 46666777777777766544321 123444 66777
Q ss_pred EEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhH---HHHhhcCCCccEEEecCCccCHhHHHHHHh---cCCC
Q 006015 256 ALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSI---ANGLKKLSMLQSIKLDGSVVTRAGLKAIGD---WCVS 329 (664)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~~ 329 (664)
+|+++++..... ....+..+++|+.|+++++ .+.+.. ......+++|+.|++.++.+.+..+..+.. .+++
T Consensus 176 ~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~ 252 (549)
T 2z81_A 176 HLTLHLSESAFL--LEIFADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252 (549)
T ss_dssp EEEEECSBSTTH--HHHHHHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTT
T ss_pred eEecccCccccc--chhhHhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcc
Confidence 777766653321 1122345666777777665 333210 011223456666666666665555444431 3455
Q ss_pred ccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHH---HHHHHHhhCC
Q 006015 330 LKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPRE---AFVLIGQRCR 406 (664)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~ 406 (664)
|+.+++.+|.......+. .. .......+++|+.|.+.++...... .+..+....+
T Consensus 253 L~~l~l~~~~~~~~~~~~----------~~------------~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~ 310 (549)
T 2z81_A 253 LSEVEFDDCTLNGLGDFN----------PS------------ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE 310 (549)
T ss_dssp CCEEEEESCEEECCSCCC----------CC------------TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHST
T ss_pred cccccccccccccccccc----------cc------------chhhhhhhcccccccccccccchhhhcccchhhhhhcc
Confidence 666666555310000000 00 0000123444555555443321100 0011122456
Q ss_pred CCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHH--hhCCCCCcEEEcCCCCCCChHH-HHHHHhcCCC
Q 006015 407 FLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHV--GMCCSKLKELDLYRCVGITDSG-ILTIACGCPD 483 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~ 483 (664)
+|+.|+++++.+.......+..+++|+.|++++| .+++..+... ...+++|++|++++|. ++... ....+..+++
T Consensus 311 ~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~ 388 (549)
T 2z81_A 311 KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKN 388 (549)
T ss_dssp TCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTT
T ss_pred cceEEEeccCccccCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCC
Confidence 7778888777766433333346778888888887 7776544321 2357788888888876 54322 2345667788
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCe
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQ 563 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 563 (664)
|++|++++|. ++. .+..+..+++|++|++++| .++. ++.. -.++|++|++++|+ ++... ..+++|++
T Consensus 389 L~~L~Ls~N~-l~~-lp~~~~~~~~L~~L~Ls~N-~l~~--l~~~--~~~~L~~L~Ls~N~-l~~~~-----~~l~~L~~ 455 (549)
T 2z81_A 389 LTSLDISRNT-FHP-MPDSCQWPEKMRFLNLSST-GIRV--VKTC--IPQTLEVLDVSNNN-LDSFS-----LFLPRLQE 455 (549)
T ss_dssp CCEEECTTCC-CCC-CCSCCCCCTTCCEEECTTS-CCSC--CCTT--SCTTCSEEECCSSC-CSCCC-----CCCTTCCE
T ss_pred CCEEECCCCC-Ccc-CChhhcccccccEEECCCC-Cccc--ccch--hcCCceEEECCCCC-hhhhc-----ccCChhcE
Confidence 8888888886 663 3345566788888888888 4443 2111 12588888888884 43321 34788999
Q ss_pred eeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHH-hCCcccceeee-hhhcccCC
Q 006015 564 INLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALL-ACGGITKVKLQ-AAFKQLLP 625 (664)
Q Consensus 564 L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l~-n~~~~~~p 625 (664)
|++++|+++. +| ....+++|+.+++++|.++++++..+ .+++|+.|+++ |++.+..|
T Consensus 456 L~Ls~N~l~~-ip----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 456 LYISRNKLKT-LP----DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EECCSSCCSS-CC----CGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EECCCCccCc-CC----CcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999998874 22 23446677788888898888877644 48999999999 88887777
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=344.51 Aligned_cols=523 Identities=16% Similarity=0.073 Sum_probs=355.0
Q ss_pred ccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCC
Q 006015 97 TSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCK 176 (664)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (664)
..+++++|++++|... ......+. .+++|+.|++++|.......+..+..+++|++|++++|. +.... +..+..++
T Consensus 22 lp~~l~~LdLs~N~i~-~i~~~~~~-~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~-p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR-TVTASSFP-FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLH-PDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCC-EECSSSCS-SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEEC-TTSSCSCS
T ss_pred CCCCcCEEECCCCcCC-ccChhHCc-ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccC-HhHccCCc
Confidence 4578999999998643 22222232 789999999999865555556778899999999999987 54432 33445689
Q ss_pred CcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchh-hhhccCCCcceEeccCCCCCCH--HHHHHHHHcCCC
Q 006015 177 NLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCL-PSILKLQHLEDLILEGCFGIDD--CSLAALKHRCKS 253 (664)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~~~~~ 253 (664)
+|++|++++|...+..+.......+++|++|++++|.+.+..+ ..++++++|++|++++|..... ..+..+. .++
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~--~~~ 175 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ--GKT 175 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH--HCS
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc--CCc
Confidence 9999999998544433322112478999999999998877654 5788999999999998765432 2222222 178
Q ss_pred CCEEeccCCCCcChhhHHHHHhccC------CCcEeecCCCCCCcHhHHHHhhcC---CCccEEEecCC---------cc
Q 006015 254 LKALDMSSCQNISHLGLSSLTSSIG------GLQQLTLAHGSPVTLSIANGLKKL---SMLQSIKLDGS---------VV 315 (664)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~~l~~l---~~L~~L~l~~~---------~~ 315 (664)
|+.|++++|...... +..+..++ .|+.|+++++ .+....+..+... .+++.+.+..+ .+
T Consensus 176 L~~L~L~~n~l~~~~--~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 176 LSFFSLAANSLYSRV--SVDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp SCCCEECCSBSCCCC--CCCCCSSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred cceEECCCCcccccc--ccchhhcCCccccCceeEEecCCC-cCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 999999988654321 11122223 3899999887 5555555444432 56778877632 22
Q ss_pred CHhHHHHHHh-cCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCC
Q 006015 316 TRAGLKAIGD-WCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVP 394 (664)
Q Consensus 316 ~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 394 (664)
.......+.. ..++|+.|+++++. +... .+..+..+++|+.|++++|.. ... .+..+..+++|+.|++++|...
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~L~~n~i-~~~-~~~~~~~l~~L~~L~Ls~N~l~- 327 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGF-VFSL-NSRVFETLKDLKVLNLAYNKI-NKI-ADEAFYGLDNLQVLNLSYNLLG- 327 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCC-CCEE-CSCCSSSCCCCCEEEEESCCC-CEE-CTTTTTTCSSCCEEEEESCCCS-
T ss_pred CCCChhhhhccccCCccEEECCCCc-cccc-ChhhhhcCCCCCEEECCCCcC-CCC-ChHHhcCCCCCCEEECCCCCCC-
Confidence 2222222221 13689999998876 3321 233456788999999998863 322 1233467889999999987642
Q ss_pred HHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHH
Q 006015 395 REAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGI 474 (664)
Q Consensus 395 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 474 (664)
......+. .+++|+.|++++|.+....+..+..+++|+.|++++| .++... .+++|+.|.+++|. ++ .+
T Consensus 328 ~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~------~~~~L~~L~l~~N~-l~--~l 396 (844)
T 3j0a_A 328 ELYSSNFY-GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN-ALTTIH------FIPSIPDIFLSGNK-LV--TL 396 (844)
T ss_dssp CCCSCSCS-SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETC-CSCCCS------SCCSCSEEEEESCC-CC--CC
T ss_pred ccCHHHhc-CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCC-CCCccc------CCCCcchhccCCCC-cc--cc
Confidence 11112222 7889999999999888777777888999999999998 776532 37889999999887 43 12
Q ss_pred HHHHhcCCCCCEEeccCCCCCCHH-HHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChh---h
Q 006015 475 LTIACGCPDLEMINIAYLKDITDS-SLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDV---G 550 (664)
Q Consensus 475 ~~~~~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~---~ 550 (664)
+ ....+++.|++++|. +++. ....+..+++|+.|++++| .++.......+..+++|+.|++++|. ++.. +
T Consensus 397 ~---~~~~~l~~L~ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~ 470 (844)
T 3j0a_A 397 P---KINLTANLIHLSENR-LENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM-LQLAWETE 470 (844)
T ss_dssp C---CCCTTCCEEECCSCC-CCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSC
T ss_pred c---ccccccceeecccCc-cccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc-cccccccc
Confidence 1 235688999999987 6653 3344568999999999999 44431111233457899999999994 3311 1
Q ss_pred HH-HHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee-hhhcccCChhH
Q 006015 551 ML-PLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQLLPQPL 628 (664)
Q Consensus 551 ~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~~ 628 (664)
.. .....+++|+.|++++|++++..+.. +..+++|+.+++++|.++++++..+. ++|+.|+++ |.+.+..|..+
T Consensus 471 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~~ 546 (844)
T 3j0a_A 471 LCWDVFEGLSHLQVLYLNHNYLNSLPPGV---FSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDVF 546 (844)
T ss_dssp CCSSCSSCBCCEECCCCCHHHHTTCCTTS---SSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCCC
T ss_pred cchhhhcCcccccEEECCCCcccccChhH---ccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhHh
Confidence 11 11223689999999999988766543 55666777999999999988765555 899999999 99998877653
Q ss_pred HHHHHhcceEEEeecccccccCCc-ccccc
Q 006015 629 IDHLQARGCVFQWRNKVFQAELDP-KSWKL 657 (664)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 657 (664)
. .+...++..|+..|.|.... ..|..
T Consensus 547 ~---~L~~l~l~~Np~~C~c~~~~f~~~~~ 573 (844)
T 3j0a_A 547 V---SLSVLDITHNKFICECELSTFINWLN 573 (844)
T ss_dssp S---SCCEEEEEEECCCCSSSCCSHHHHHH
T ss_pred C---CcCEEEecCCCcccccccHHHHHHHH
Confidence 2 46677888888888776543 33543
No 15
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.6e-30 Score=268.77 Aligned_cols=171 Identities=24% Similarity=0.295 Sum_probs=73.2
Q ss_pred hCCCCCEEEccCCCCChhhHHhhc-----cCCCccEEcccCCCCCChHhHHHHh---hCCCCCcEEEcCCCCCCChHHHH
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSIS-----RCSKLSVLKLGICLNITGEGLAHVG---MCCSKLKELDLYRCVGITDSGIL 475 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~ 475 (664)
.+++|++|++++|.+.+.+...+. .+++|+.|++++| .+++.+...+. ..+++|++|++++|. +++.+..
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~ 302 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGAR 302 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHH
Confidence 344444444444444443322221 2445555555555 44444322221 134555555555544 4333322
Q ss_pred HHHhc----CCCCCEEeccCCCCCCHHH----HHhhhcCCCCCEEEccCCCCCCHHHHHHHHh---c-CCcCcEEeccCc
Q 006015 476 TIACG----CPDLEMINIAYLKDITDSS----LLSLSKCSRLNTFESRGCPLITSLGLAAIAV---G-CKQLIKLDIKWC 543 (664)
Q Consensus 476 ~~~~~----~~~L~~L~l~~~~~l~~~~----~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~---~-~~~L~~L~l~~~ 543 (664)
.+... .++|++|++++|. +++.. ...+..+++|++|++++| .+++.++..... . .++|++|++++|
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 22221 1355555555554 44332 222334455555555555 444433322221 1 345555555555
Q ss_pred cccChhhHHHHH---hcCcccCeeeeccCCCChhHHHHh
Q 006015 544 HNINDVGMLPLA---HFSQNLRQINLSYTSVTDVGLLSL 579 (664)
Q Consensus 544 ~~i~~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~l 579 (664)
.+++.+...+. ..+++|++|++++|++++.+...+
T Consensus 381 -~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l 418 (461)
T 1z7x_W 381 -DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 418 (461)
T ss_dssp -CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHH
T ss_pred -CCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHH
Confidence 34443322221 124555555555555555544333
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-34 Score=306.67 Aligned_cols=468 Identities=13% Similarity=0.101 Sum_probs=289.4
Q ss_pred CCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcC
Q 006015 125 KNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEI 204 (664)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (664)
++|++|++++| .+....+..+..+++|++|++++|. ++... +..+..+++|++|++++| .+...+...+ ..+++|
T Consensus 26 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIE-GDAFYSLGSLEHLDLSDN-HLSSLSSSWF-GPLSSL 100 (549)
T ss_dssp TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECTTS-CCCSCCHHHH-TTCTTC
T ss_pred CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccC-hhhccccccCCEEECCCC-ccCccCHHHh-ccCCCC
Confidence 45666666665 3444333445555666666666554 33221 111223455555555554 2222222222 244555
Q ss_pred cEEeccCCCCCC-chhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEe
Q 006015 205 RSLDLSYLPITN-KCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQL 283 (664)
Q Consensus 205 ~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (664)
++|++++|.+++ ..+..++++++|++|++++|...+..+. ..+..+++|++|
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---------------------------~~~~~l~~L~~L 153 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR---------------------------IDFAGLTSLNEL 153 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT---------------------------TTTTTCCEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCH---------------------------hhhhcccccCee
Confidence 555555554443 1233344444444444444432222111 123445555566
Q ss_pred ecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhH--HHHHhhCCCccEEec
Q 006015 284 TLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGL--SYVATKHRDLRKLDI 361 (664)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l 361 (664)
+++++ .+.+..+..+..+++|+.|+++++.+... +..+...+++|+.|+++++. +....+ ......+++|+.|++
T Consensus 154 ~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~L~~L~l 230 (549)
T 2z81_A 154 EIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFL-LEIFADILSSVRYLELRDTN-LARFQFSPLPVDEVSSPMKKLAF 230 (549)
T ss_dssp EEEET-TCCEECTTTTTTCSEEEEEEEECSBSTTH-HHHHHHSTTTBSEEEEESCB-CTTCCCCCCSSCCCCCCCCEEEE
T ss_pred eccCC-cccccChhhhhccccCceEecccCccccc-chhhHhhcccccEEEccCCc-cccccccccchhhhhhcccceec
Confidence 66555 44444556666777777777777765433 33333356777777777765 221100 011234677888888
Q ss_pred CCCCCCChHHHHHH---HhcCCCCcEEEcCCCCCCCHH-----HHHHHHhhCCCCCEEEccCCCCChhh-----HHhhcc
Q 006015 362 TCCRKISDVSITHV---TSSCTGLTSLRMESCTLVPRE-----AFVLIGQRCRFLEELDLTDNEIDDEG-----LKSISR 428 (664)
Q Consensus 362 ~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~l~~ 428 (664)
+++. +.+.....+ ...+++|+.+++++|...... .... ...+++++.|++.++.+.... ...+..
T Consensus 231 ~~n~-l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~ 308 (549)
T 2z81_A 231 RGSV-LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV-VSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308 (549)
T ss_dssp ESCE-EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC-CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHH
T ss_pred cccc-cchhHHHHHHHHhhhhccccccccccccccccccccccchhh-hhhhcccccccccccccchhhhcccchhhhhh
Confidence 7765 344333322 345678888888776542100 0011 125788999999988765432 111233
Q ss_pred CCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHH--HHhcCCCCCEEeccCCCCCCHHHH--Hhhh
Q 006015 429 CSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILT--IACGCPDLEMINIAYLKDITDSSL--LSLS 504 (664)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~--~~l~ 504 (664)
.++|+.|++++| .++.. +..+...+++|++|++++|. +++..... .+..+++|++|++++|. +++... ..+.
T Consensus 309 ~~~L~~L~l~~n-~l~~i-p~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~ 384 (549)
T 2z81_A 309 LEKVKRITVENS-KVFLV-PCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILL 384 (549)
T ss_dssp STTCCEEEEESS-CCCCC-CHHHHHHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGG
T ss_pred cccceEEEeccC-ccccC-CHHHHhcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCc-ccccccchhhhh
Confidence 678999999999 78754 34444479999999999998 76433322 24678999999999998 876543 5688
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcc
Q 006015 505 KCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISC 584 (664)
Q Consensus 505 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 584 (664)
.+++|++|++++| .++. ++..+..+++|++|++++|. ++... . ...++|+.|++++|++++. ...
T Consensus 385 ~l~~L~~L~Ls~N-~l~~--lp~~~~~~~~L~~L~Ls~N~-l~~l~---~-~~~~~L~~L~Ls~N~l~~~-------~~~ 449 (549)
T 2z81_A 385 TLKNLTSLDISRN-TFHP--MPDSCQWPEKMRFLNLSSTG-IRVVK---T-CIPQTLEVLDVSNNNLDSF-------SLF 449 (549)
T ss_dssp GCTTCCEEECTTC-CCCC--CCSCCCCCTTCCEEECTTSC-CSCCC---T-TSCTTCSEEECCSSCCSCC-------CCC
T ss_pred cCCCCCEEECCCC-CCcc--CChhhcccccccEEECCCCC-ccccc---c-hhcCCceEEECCCCChhhh-------ccc
Confidence 9999999999999 6664 56666788999999999994 44321 0 1137999999999999873 246
Q ss_pred cccceeeccCCCCHHHHHHHHHhCCcccceeee-hhhcccCChhHHHHHHhcceEEEeeccccccc
Q 006015 585 LQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQLLPQPLIDHLQARGCVFQWRNKVFQAE 649 (664)
Q Consensus 585 L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 649 (664)
+++|+.+++++|.++.+|. ...+++|+.|+|+ |.+.+..|..+.....+...++..|+..+.|.
T Consensus 450 l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 450 LPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 7788899999999998876 3459999999999 99997666655555667788888887776664
No 17
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.6e-29 Score=262.83 Aligned_cols=398 Identities=20% Similarity=0.249 Sum_probs=205.3
Q ss_pred CCcEEecccCcCCChHHHHH-HHhcCCCcEEEccCccccChHH---HHHHHhcCCCcceEeccccCCcChhHHHHHHHcC
Q 006015 126 NLKEIDISNAVSLKDAGAAA-LAEAKNLEKLWMGRCKMVTDMG---VGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKC 201 (664)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 201 (664)
+|++|+++++ .+.+..... +..+++|++|++++|. +++.+ +......+++|++|++++| .+++.....++..+
T Consensus 4 ~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 4 DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTT
T ss_pred cceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHH
Confidence 4455555544 333333322 4455556666666555 44432 2233334566666666665 34444444444445
Q ss_pred C----cCcEEeccCCCCCCc----hhhhhccCCCcceEeccCCCCCCHHHHHHHHHc----CCCCCEEeccCCCCcChhh
Q 006015 202 K----EIRSLDLSYLPITNK----CLPSILKLQHLEDLILEGCFGIDDCSLAALKHR----CKSLKALDMSSCQNISHLG 269 (664)
Q Consensus 202 ~----~L~~L~l~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~ 269 (664)
+ +|++|++++|.+++. .+..+..+++|++|++++|. +++.....+... .++|++|++++|......
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~- 158 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS- 158 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG-
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH-
Confidence 4 577777777766642 35556667777777777655 333333333321 234666666555422111
Q ss_pred HHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHh----cCCCccEEEcCCCCCCCchh
Q 006015 270 LSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGD----WCVSLKELSLSKCDGVTDEG 345 (664)
Q Consensus 270 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~ 345 (664)
. ..++..+..+++|++|++++|.+.+.....+.. ..++|++|++++|. +++.+
T Consensus 159 ~----------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~ 215 (461)
T 1z7x_W 159 C----------------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDN 215 (461)
T ss_dssp H----------------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTH
T ss_pred H----------------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHH
Confidence 0 123444555566666666666655544444432 23466666666664 33322
Q ss_pred ---HHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhh
Q 006015 346 ---LSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEG 422 (664)
Q Consensus 346 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 422 (664)
+...+..+++|++|++++|. +++.....+.. .+...+++|++|++++|.+++..
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~----------------------~~~~~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNK-LGDVGMAELCP----------------------GLLHPSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHH----------------------HHTSTTCCCCEEECTTSCCCHHH
T ss_pred HHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHH----------------------HHhcCCCCceEEECcCCCCCHHH
Confidence 34444555666666666554 33322221111 11112444555555555444432
Q ss_pred ----HHhhccCCCccEEcccCCCCCChHhHHHHhh----CCCCCcEEEcCCCCCCChHH---HHHHHhcCCCCCEEeccC
Q 006015 423 ----LKSISRCSKLSVLKLGICLNITGEGLAHVGM----CCSKLKELDLYRCVGITDSG---ILTIACGCPDLEMINIAY 491 (664)
Q Consensus 423 ----~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~ 491 (664)
+..+.++++|+.|++++| .+++.+...+.. ..++|++|++++|. +++.+ +...+..+++|++|++++
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~ 350 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISN 350 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccC
Confidence 233334555555555555 555544443332 22466666666665 44332 344455566666666666
Q ss_pred CCCCCHHHHHhhhc-----CCCCCEEEccCCCCCCHH---HHHHHHhcCCcCcEEeccCccccChhhHHHHHhcC----c
Q 006015 492 LKDITDSSLLSLSK-----CSRLNTFESRGCPLITSL---GLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFS----Q 559 (664)
Q Consensus 492 ~~~l~~~~~~~l~~-----~~~L~~L~l~~~~~l~~~---~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~----~ 559 (664)
|. +++.....+.. .++|++|++++| .+++. .++..+..+++|++|++++| .+++.+...+...+ .
T Consensus 351 n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~ 427 (461)
T 1z7x_W 351 NR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGC 427 (461)
T ss_dssp SB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTC
T ss_pred Cc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCc
Confidence 65 66555554442 556777777777 55542 24555566777777777777 55666655554432 3
Q ss_pred ccCeeeeccCCCChhHHHHh
Q 006015 560 NLRQINLSYTSVTDVGLLSL 579 (664)
Q Consensus 560 ~L~~L~l~~n~l~~~~~~~l 579 (664)
+|+.|++.++.......+.+
T Consensus 428 ~L~~L~~~~~~~~~~~~~~l 447 (461)
T 1z7x_W 428 LLEQLVLYDIYWSEEMEDRL 447 (461)
T ss_dssp CCCEEECTTCCCCHHHHHHH
T ss_pred chhheeecccccCHHHHHHH
Confidence 57777777776665544443
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.5e-35 Score=315.60 Aligned_cols=493 Identities=16% Similarity=0.134 Sum_probs=343.5
Q ss_pred ccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCC
Q 006015 97 TSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCK 176 (664)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (664)
..+++++|++++|... ......+. .+++|++|++++| .+.......+..+++|++|++++|. ++... +..+..++
T Consensus 26 l~~~l~~L~Ls~n~l~-~~~~~~~~-~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~ 100 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLR-HLGSYSFF-SFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLA-LGAFSGLS 100 (570)
T ss_dssp SCSSCCEEECCSCCCC-EECTTTTT-TCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEEC-TTTTTTCT
T ss_pred ccccccEEEccCCccC-ccChhHhh-CCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCc-CCccC-HhhhcCcc
Confidence 4568999999999643 22222333 7899999999998 5666666778889999999999987 54432 23344589
Q ss_pred CcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCC-chhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCC-
Q 006015 177 NLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITN-KCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSL- 254 (664)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L- 254 (664)
+|++|++++|. +...+...+ ..+++|++|++++|.+.+ ..|..++++++|++|++++|...... ...+.. +++|
T Consensus 101 ~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~-l~~L~ 176 (570)
T 2z63_A 101 SLQKLVAVETN-LASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-CTDLRV-LHQMP 176 (570)
T ss_dssp TCCEEECTTSC-CCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC-GGGGHH-HHTCT
T ss_pred ccccccccccc-cccCCCccc-cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec-HHHccc-hhccc
Confidence 99999999884 443332222 488999999999998886 46888999999999999987654321 122333 5556
Q ss_pred ---CEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCcc---------CHhHHHH
Q 006015 255 ---KALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVV---------TRAGLKA 322 (664)
Q Consensus 255 ---~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~---------~~~~~~~ 322 (664)
+.+++++|...... +..+.. .+|+.|+++++.......+..+..+++++.+.+....+ .......
T Consensus 177 ~~~~~L~l~~n~l~~~~--~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQ--PGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp TCCCEEECTTCCCCEEC--TTTTTT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred hhhhhcccCCCCceecC--HHHhcc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 78999887643321 122222 36889988887444455677778888887766543211 1111111
Q ss_pred HHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHH
Q 006015 323 IGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIG 402 (664)
Q Consensus 323 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 402 (664)
+. . -.++.+.+.++..+.. ..+..+..+++|++|+++++.. .. ++.....+ +|++|++++|.... +..
T Consensus 254 l~-~-l~l~~l~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l-~~--l~~~~~~~-~L~~L~l~~n~~~~---l~~-- 321 (570)
T 2z63_A 254 LC-N-LTIEEFRLAYLDYYLD-DIIDLFNCLTNVSSFSLVSVTI-ER--VKDFSYNF-GWQHLELVNCKFGQ---FPT-- 321 (570)
T ss_dssp GG-G-SEEEEEEEEETTEEES-CSTTTTGGGTTCSEEEEESCEE-CS--CCBCCSCC-CCSEEEEESCBCSS---CCB--
T ss_pred cc-c-cchhhhhhhcchhhhh-hchhhhcCcCcccEEEecCccc-hh--hhhhhccC-CccEEeeccCcccc---cCc--
Confidence 11 1 1356666665521211 2334456789999999998863 22 33334456 89999999987531 111
Q ss_pred hhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHh--HHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhc
Q 006015 403 QRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEG--LAHVGMCCSKLKELDLYRCVGITDSGILTIACG 480 (664)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 480 (664)
..+++|++|+++++.+...... ..+++|+.|++++| .++... ...+. .+++|++|++++|. ++. +...+..
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n-~l~~~~~~~~~~~-~~~~L~~L~l~~n~-l~~--~~~~~~~ 394 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRN-GLSFKGCCSQSDF-GTTSLKYLDLSFNG-VIT--MSSNFLG 394 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSS-CCBEEEEEEHHHH-TCSCCCEEECCSCS-EEE--EEEEEET
T ss_pred ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCC-ccCcccccccccc-ccCccCEEECCCCc-ccc--ccccccc
Confidence 2689999999999887654433 67899999999999 887643 34444 79999999999997 432 1222567
Q ss_pred CCCCCEEeccCCCCCCHHHH-HhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCc
Q 006015 481 CPDLEMINIAYLKDITDSSL-LSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQ 559 (664)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~ 559 (664)
+++|++|++++|. +++..+ ..+..+++|++|++++| .++.. .+..+.++++|++|++++|+ +.+.........++
T Consensus 395 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 395 LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELR 470 (570)
T ss_dssp CTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCT
T ss_pred cCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCC-ccccc-chhhhhcCCcCcEEECcCCc-Cccccchhhhhccc
Confidence 8999999999997 655433 46778999999999999 44332 45567789999999999994 33211222333489
Q ss_pred ccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHH-hCCcccceeee-hhhcccCChh
Q 006015 560 NLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALL-ACGGITKVKLQ-AAFKQLLPQP 627 (664)
Q Consensus 560 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l~-n~~~~~~p~~ 627 (664)
+|+.|++++|++++..|..++ ++++|+.+++++|.++++++..+ ++++|+.|+++ |.+.+..|..
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFN---SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTT---TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCEEECCCCccccCChhhhh---cccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 999999999999987666554 55666788999999999877654 49999999999 9999888854
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.8e-35 Score=315.19 Aligned_cols=490 Identities=16% Similarity=0.110 Sum_probs=335.3
Q ss_pred CCCcEeeccCCCCCChhHHHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCC
Q 006015 72 SNTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKN 151 (664)
Q Consensus 72 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 151 (664)
++++.|+++++ .+.......+. .+++|++|++++|.. .......+. .+++|++|++++| .+....+..+..+++
T Consensus 28 ~~l~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~Ls~n~i-~~i~~~~~~-~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSFN-PLRHLGSYSFF--SFPELQVLDLSRCEI-QTIEDGAYQ-SLSHLSTLILTGN-PIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCSC-CCCEECTTTTT--TCSSCCEEECTTCCC-CEECTTTTT-TCTTCCEEECTTC-CCCEECTTTTTTCTT
T ss_pred ccccEEEccCC-ccCccChhHhh--CCCCceEEECCCCcC-CccCccccc-CchhCCEEeCcCC-cCCccCHhhhcCccc
Confidence 45999999975 44443332233 689999999999963 333322233 7999999999998 566666678889999
Q ss_pred CcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcC-hhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCc--
Q 006015 152 LEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVG-DLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHL-- 228 (664)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L-- 228 (664)
|++|++++|. ++..+... +..+++|++|++++|.... ..+..+ .++++|++|++++|.+++..+..++.+++|
T Consensus 102 L~~L~L~~n~-l~~l~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 102 LQKLVAVETN-LASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp CCEEECTTSC-CCCSTTCS-CTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred cccccccccc-cccCCCcc-ccccccccEEecCCCccceecChhhh--cccCCCCEEeCcCCccceecHHHccchhccch
Confidence 9999999987 44432111 4469999999999984333 223222 589999999999999988777788888888
Q ss_pred --ceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCC-----CCCcHhHHHHhhc
Q 006015 229 --EDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHG-----SPVTLSIANGLKK 301 (664)
Q Consensus 229 --~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-----~~~~~~~~~~l~~ 301 (664)
+.|++++|...... ...+. ..+|++|+++++. .....++..+..+++++...+... ..+.......+..
T Consensus 178 ~~~~L~l~~n~l~~~~-~~~~~--~~~L~~L~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 178 LNLSLDLSLNPMNFIQ-PGAFK--EIRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp CCCEEECTTCCCCEEC-TTTTT--TCEEEEEEEESCC-SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred hhhhcccCCCCceecC-HHHhc--cCcceeEeccccc-ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 89999997654432 22233 3489999999875 333456777888888876655321 0111111112222
Q ss_pred CC--CccEEEecCC-ccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhc
Q 006015 302 LS--MLQSIKLDGS-VVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSS 378 (664)
Q Consensus 302 l~--~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (664)
++ .++.+++.++ .+.+..+..+. .+++|++|+++++. +. .++..+..+ +|++|++++|... . ++. ..
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~-l~--~l~~~~~~~-~L~~L~l~~n~~~-~--l~~--~~ 323 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVT-IE--RVKDFSYNF-GWQHLELVNCKFG-Q--FPT--LK 323 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCE-EC--SCCBCCSCC-CCSEEEEESCBCS-S--CCB--CB
T ss_pred ccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCcc-ch--hhhhhhccC-CccEEeeccCccc-c--cCc--cc
Confidence 22 3566666665 33333344444 67888888888875 22 233334556 8889998888643 2 111 36
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhh--HHhhccCCCccEEcccCCCCCChHhHHHHhhCCC
Q 006015 379 CTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEG--LKSISRCSKLSVLKLGICLNITGEGLAHVGMCCS 456 (664)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 456 (664)
+++|+.|++++|........ ..+++|++|++++|.+.... +..+..+++|+.|++++| .+...... + ..++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~-~~l~ 396 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN-F-LGLE 396 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEEE-E-ETCT
T ss_pred ccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC-cccccccc-c-cccC
Confidence 78899999988765322111 37889999999998887654 567778899999999998 77654332 3 3789
Q ss_pred CCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCc
Q 006015 457 KLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLI 536 (664)
Q Consensus 457 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 536 (664)
+|++|++++|. ++.......+.++++|++|++++|. +++..+..+..+++|+.|++++| .+++..++..+..+++|+
T Consensus 397 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 397 QLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCC
T ss_pred CCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCC
Confidence 99999999887 4322222345678999999999997 77777777888999999999999 443222455677889999
Q ss_pred EEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHH
Q 006015 537 KLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNG 600 (664)
Q Consensus 537 ~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~ 600 (664)
+|++++| .++..... ....+++|++|++++|++++..+.. +.++++|+.+++++|.+++
T Consensus 474 ~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 474 FLDLSQC-QLEQLSPT-AFNSLSSLQVLNMASNQLKSVPDGI---FDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp EEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTT---TTTCTTCCEEECCSSCBCC
T ss_pred EEECCCC-ccccCChh-hhhcccCCCEEeCCCCcCCCCCHHH---hhcccCCcEEEecCCcccC
Confidence 9999999 44433211 2234789999999999988865544 4555666788888887753
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.6e-33 Score=297.35 Aligned_cols=444 Identities=13% Similarity=0.073 Sum_probs=273.8
Q ss_pred CCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCC
Q 006015 176 KNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLK 255 (664)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (664)
++|++|++++| .+...+...+ ..+++|++|++++|.+++..+..++++++|++|++++|.... .+. . . +++|+
T Consensus 21 ~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~--~-~-l~~L~ 93 (520)
T 2z7x_B 21 QKTTILNISQN-YISELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISC--H-P-TVNLK 93 (520)
T ss_dssp TTCSEEECCSS-CCCCCCHHHH-TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EEC--C-C-CCCCS
T ss_pred ccccEEECCCC-cccccChhhc-cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCc--c-c-cCCcc
Confidence 55666666666 3333333322 366677777777776666656666777777777777665442 111 1 2 67777
Q ss_pred EEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCc--cEEEecCCcc--CHhHHHHHHhcCC-Cc
Q 006015 256 ALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSML--QSIKLDGSVV--TRAGLKAIGDWCV-SL 330 (664)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~l~~~~~-~L 330 (664)
+|++++|.... ..++..+..+++|+.|+++++ .+.+ ..+..+++| +.|++++|.+ ....+..+. .+. ..
T Consensus 94 ~L~L~~N~l~~-~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~-~l~~~~ 167 (520)
T 2z7x_B 94 HLDLSFNAFDA-LPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ-DFNTES 167 (520)
T ss_dssp EEECCSSCCSS-CCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT-TCCEEE
T ss_pred EEeccCCcccc-ccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeeccccccccccccccc-ccccce
Confidence 77777765432 112344566777777777776 4443 345555666 7777777766 333333332 221 12
Q ss_pred cEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCC---CC-hHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHh--h
Q 006015 331 KELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRK---IS-DVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQ--R 404 (664)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~ 404 (664)
..+++.++.... ......+..+++|+.+++++|.. .. -......+..+++|+.|+++++.. .+..+..+.. .
T Consensus 168 l~l~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l-~~~~~~~~~~~~~ 245 (520)
T 2z7x_B 168 LHIVFPTNKEFH-FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET-TWNSFIRILQLVW 245 (520)
T ss_dssp EEEECCSSSCCC-CCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE-EHHHHHHHHHHHH
T ss_pred EEEEeccCcchh-hhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc-CHHHHHHHHHHhh
Confidence 244555543211 11111234567778887777641 00 011112345678888888877554 3333332221 3
Q ss_pred CCCCCEEEccCCCCChhhHHhh-----ccCCCccEEcccCCCCCCh--HhHHHHhhCCCCCcEEEcCCCCCCChHHHHHH
Q 006015 405 CRFLEELDLTDNEIDDEGLKSI-----SRCSKLSVLKLGICLNITG--EGLAHVGMCCSKLKELDLYRCVGITDSGILTI 477 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~l~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 477 (664)
+++|++|++++|.+.+..+..+ .++++|+.+++++| .+.- ..+..+. ..++|+.|++++|. +.....
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n-~~~~p~~~~~~~~-~~~~L~~L~l~~n~-l~~~~~--- 319 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD-VFGFPQSYIYEIF-SNMNIKNFTVSGTR-MVHMLC--- 319 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEEC-CCCSCTHHHHHHH-HTCCCSEEEEESSC-CCCCCC---
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEecccccc-ceecchhhhhccc-ccCceeEEEcCCCc-cccccc---
Confidence 5688899998888776666666 77888888888888 5521 1122222 23578888888887 432211
Q ss_pred HhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCH-HHHHHHHhcCCcCcEEeccCccccCh-hhHHHHH
Q 006015 478 ACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITS-LGLAAIAVGCKQLIKLDIKWCHNIND-VGMLPLA 555 (664)
Q Consensus 478 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~i~~-~~~~~~~ 555 (664)
...+++|++|++++|. +++..+..+..+++|++|++++| .++. ..++..+..+++|++|++++|+. +. ... ...
T Consensus 320 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l-~~~l~~-~~~ 395 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSV-SYDEKK-GDC 395 (520)
T ss_dssp CSSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCC-BCCGGG-CSC
T ss_pred hhhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcC-Cccccc-chh
Confidence 1467888889998887 87767777888888899999888 4543 23566778888899999988843 32 111 112
Q ss_pred hcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee-hhhcccCChh-HHHHHH
Q 006015 556 HFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQLLPQP-LIDHLQ 633 (664)
Q Consensus 556 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~-~~~~~~ 633 (664)
..+++|+.|++++|++++..+..+ + ++|+.+++++|.++.+|..++.+++|+.|+++ |.+. .+|.. +.....
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l---~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 469 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCL---P--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS 469 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSC---C--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred ccCccCCEEECcCCCCCcchhhhh---c--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc
Confidence 336888888888888877664332 2 56778888888888888877788888888888 7777 67765 333345
Q ss_pred hcceEEEeecccccccC
Q 006015 634 ARGCVFQWRNKVFQAEL 650 (664)
Q Consensus 634 ~~~~~~~~~~~~~~~~~ 650 (664)
+...++..|+..|.|..
T Consensus 470 L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 470 LQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCEEECCSSCBCCCHHH
T ss_pred ccEEECcCCCCcccCCc
Confidence 66777777776666643
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1e-34 Score=322.60 Aligned_cols=492 Identities=15% Similarity=0.066 Sum_probs=351.0
Q ss_pred CCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCc
Q 006015 124 CKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKE 203 (664)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (664)
.+++++|++++| .+....+..+..+++|++|++++|....... +..+.++++|++|++++|. +.......+ ..+++
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~-~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSSK-IYFLHPDAF-QGLFH 98 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTCC-CCEECTTSS-CSCSS
T ss_pred CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCCc-CcccCHhHc-cCCcc
Confidence 478999999998 5666666788899999999999995443322 2334569999999999994 444433333 48999
Q ss_pred CcEEeccCCCCCCchhhh--hccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhcc--CC
Q 006015 204 IRSLDLSYLPITNKCLPS--ILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSI--GG 279 (664)
Q Consensus 204 L~~L~l~~~~l~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~ 279 (664)
|++|++++|.+++..+.. +.++++|++|++++|...+......+.. +++|++|++++|...... +..+..+ ++
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~-L~~L~~L~Ls~N~i~~~~--~~~l~~l~~~~ 175 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK-LNSLKSIDFSSNQIFLVC--EHELEPLQGKT 175 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT-CSSCCEEEEESSCCCCCC--SGGGHHHHHCS
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh-CCCCCEEECCCCcCCeeC--HHHcccccCCc
Confidence 999999999998766665 8899999999999987765432234565 999999999998753321 1112222 79
Q ss_pred CcEeecCCCCCCcHhHHHHhhcCCC------ccEEEecCCccCHhHHHHHHhc--CCCccEEEcCCCC--------CCCc
Q 006015 280 LQQLTLAHGSPVTLSIANGLKKLSM------LQSIKLDGSVVTRAGLKAIGDW--CVSLKELSLSKCD--------GVTD 343 (664)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~l~~------L~~L~l~~~~~~~~~~~~l~~~--~~~L~~L~l~~~~--------~~~~ 343 (664)
|+.|+++.+ .+....+..+..+++ |+.|++++|.+....+..+... ..+++.+.+..+. .+.+
T Consensus 176 L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~ 254 (844)
T 3j0a_A 176 LSFFSLAAN-SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD 254 (844)
T ss_dssp SCCCEECCS-BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred cceEECCCC-ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence 999999988 555544444444444 9999999998776655555432 2578888876321 0111
Q ss_pred hhHHHHHhh--CCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChh
Q 006015 344 EGLSYVATK--HRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDE 421 (664)
Q Consensus 344 ~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (664)
.. ...+.. .++|+.|++++|.. ... .+..+..+++|+.|++++|.. .......+. .+++|++|++++|.+...
T Consensus 255 ~~-~~~f~~l~~~~L~~L~Ls~n~l-~~~-~~~~~~~l~~L~~L~L~~n~i-~~~~~~~~~-~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 255 PD-QNTFAGLARSSVRHLDLSHGFV-FSL-NSRVFETLKDLKVLNLAYNKI-NKIADEAFY-GLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp GG-GTTTTTTTTSCCCEEECTTCCC-CEE-CSCCSSSCCCCCEEEEESCCC-CEECTTTTT-TCSSCCEEEEESCCCSCC
T ss_pred CC-hhhhhccccCCccEEECCCCcc-ccc-ChhhhhcCCCCCEEECCCCcC-CCCChHHhc-CCCCCCEEECCCCCCCcc
Confidence 11 111122 37899999998863 322 233356789999999999765 222222233 789999999999999887
Q ss_pred hHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHH
Q 006015 422 GLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLL 501 (664)
Q Consensus 422 ~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 501 (664)
.+..+..+++|+.|++++| .++......+. .+++|+.|++++|. ++. +..+++|+.|++++|. ++...
T Consensus 330 ~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~-~l~~L~~L~Ls~N~-l~~------i~~~~~L~~L~l~~N~-l~~l~-- 397 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKN-HIAIIQDQTFK-FLEKLQTLDLRDNA-LTT------IHFIPSIPDIFLSGNK-LVTLP-- 397 (844)
T ss_dssp CSCSCSSCTTCCEEECCSC-CCCCCCSSCSC-SCCCCCEEEEETCC-SCC------CSSCCSCSEEEEESCC-CCCCC--
T ss_pred CHHHhcCCCCCCEEECCCC-CCCccChhhhc-CCCCCCEEECCCCC-CCc------ccCCCCcchhccCCCC-ccccc--
Confidence 7888999999999999999 88765443343 78999999999987 542 1237899999999997 66321
Q ss_pred hhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHh--
Q 006015 502 SLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSL-- 579 (664)
Q Consensus 502 ~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l-- 579 (664)
....+++.|++++| .++.......+.++++|+.|++++|+ ++..........+++|+.|++++|.++...+..+
T Consensus 398 --~~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~ 473 (844)
T 3j0a_A 398 --KINLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473 (844)
T ss_dssp --CCCTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred --ccccccceeecccC-ccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCCccccccccccch
Confidence 12568999999999 56554455667799999999999994 3322111112236899999999999874322111
Q ss_pred hCCcccccceeeccCCCCHHHHHHHHHh-CCcccceeee-hhhcccCChhHHHHHHhcceEEEeecccc
Q 006015 580 ASISCLQNMTILHLKGLSLNGLAAALLA-CGGITKVKLQ-AAFKQLLPQPLIDHLQARGCVFQWRNKVF 646 (664)
Q Consensus 580 ~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~-n~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 646 (664)
..+..+++|+.+++++|.++++++..+. +++|+.|+|+ |.+.+..|.. .. ..+...+++.|....
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~-~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LP-ANLEILDISRNQLLA 540 (844)
T ss_dssp SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC-CC-SCCCEEEEEEECCCC
T ss_pred hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh-hh-ccccEEECCCCcCCC
Confidence 2367788899999999999999887655 9999999999 8888544433 22 456777888877653
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=7.3e-32 Score=284.72 Aligned_cols=436 Identities=14% Similarity=0.128 Sum_probs=196.5
Q ss_pred CccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCc
Q 006015 99 FTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNL 178 (664)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 178 (664)
++|++|++++|.... .....+. .+++|++|++++| .+....+..+..+++|++|++++|. ++..+ .. .+++|
T Consensus 21 ~~L~~L~Ls~n~i~~-~~~~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp--~~--~l~~L 92 (520)
T 2z7x_B 21 QKTTILNISQNYISE-LWTSDIL-SLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK-LVKIS--CH--PTVNL 92 (520)
T ss_dssp TTCSEEECCSSCCCC-CCHHHHT-TCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC-CCEEE--CC--CCCCC
T ss_pred ccccEEECCCCcccc-cChhhcc-ccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc-eeecC--cc--ccCCc
Confidence 566677776665322 2222232 5666666666666 4444444556666666666666665 33221 11 35666
Q ss_pred ceEeccccCCcC-hhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCc--ceEeccCCCC--CCHHHHHHHHHcCCC
Q 006015 179 KLISLKWCLGVG-DLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHL--EDLILEGCFG--IDDCSLAALKHRCKS 253 (664)
Q Consensus 179 ~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L--~~L~l~~~~~--~~~~~~~~l~~~~~~ 253 (664)
++|++++|...+ ..+..+ ..+++|++|++++|.+++ ..+..+++| +.|++++|.. .... +.. +..
T Consensus 93 ~~L~L~~N~l~~~~~p~~~--~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~-~~~----l~~ 162 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEF--GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKED-PEG----LQD 162 (520)
T ss_dssp SEEECCSSCCSSCCCCGGG--GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCC-TTT----TTT
T ss_pred cEEeccCCccccccchhhh--ccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccc-ccc----ccc
Confidence 666666653222 111111 355666666666665554 233344444 6666655543 1111 001 222
Q ss_pred CC----EEeccCCCCcChhhHHHHHhccCCCcEeecCCCC------CCcHhHHHHhhcCCCccEEEecCCccCHhHHHHH
Q 006015 254 LK----ALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGS------PVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAI 323 (664)
Q Consensus 254 L~----~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l 323 (664)
++ .+++++|..... .....+..+++|+.++++++. .+.+.. ..+..+++|+.|++.++.+.+..+..+
T Consensus 163 l~~~~l~l~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~l~~~~~~~~ 240 (520)
T 2z7x_B 163 FNTESLHIVFPTNKEFHF-ILDVSVKTVANLELSNIKCVLEDNKCSYFLSIL-AKLQTNPKLSNLTLNNIETTWNSFIRI 240 (520)
T ss_dssp CCEEEEEEECCSSSCCCC-CCCCCCTTCSEEEECCEEECCSTTTTHHHHHHH-HGGGGCTTCCEEEEEEEEEEHHHHHHH
T ss_pred cccceEEEEeccCcchhh-hhhhhhhcccceeeccccccccccccceeecch-hhhccccchhhccccccccCHHHHHHH
Confidence 22 333333332211 011122345556666665541 022222 255566666666666665554433332
Q ss_pred Hh--cCCCccEEEcCCCCCCCchhHHHHH-----hhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHH
Q 006015 324 GD--WCVSLKELSLSKCDGVTDEGLSYVA-----TKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPRE 396 (664)
Q Consensus 324 ~~--~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 396 (664)
.. ..++|++|++++|. +.+ .++..+ ..+++|+.++++++.. . ++..
T Consensus 241 ~~~~~~~~L~~L~l~~n~-l~~-~~p~~~~~~~~~~l~~L~~l~l~~n~~-~------------------------~p~~ 293 (520)
T 2z7x_B 241 LQLVWHTTVWYFSISNVK-LQG-QLDFRDFDYSGTSLKALSIHQVVSDVF-G------------------------FPQS 293 (520)
T ss_dssp HHHHHTSSCSEEEEEEEE-EES-CCCCCCCCCCSCCCCEEEEEEEEECCC-C------------------------SCTH
T ss_pred HHHhhhCcccEEEeeccc-ccC-ccccchhhcccccCceeEeccccccce-e------------------------cchh
Confidence 21 13456666665543 110 011111 3344444445444432 0 1111
Q ss_pred HHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCCh-HHHH
Q 006015 397 AFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITD-SGIL 475 (664)
Q Consensus 397 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~ 475 (664)
.+.... ..++|+.|+++++.+.... ....+++|+.|++++| .+++..+..+. .+++|++|++++|. ++. ..++
T Consensus 294 ~~~~~~-~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~l~~~~ 367 (520)
T 2z7x_B 294 YIYEIF-SNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN-LLTDTVFENCG-HLTELETLILQMNQ-LKELSKIA 367 (520)
T ss_dssp HHHHHH-HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTCC-CCSSCCEEECCSSC-CCBHHHHH
T ss_pred hhhccc-ccCceeEEEcCCCcccccc--chhhCCcccEEEeECC-ccChhhhhhhc-cCCCCCEEEccCCc-cCccccch
Confidence 122111 2234555555554443311 1134455555555555 44443333222 45555555555554 332 1333
Q ss_pred HHHhcCCCCCEEeccCCCCCCH-HHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcC-CcCcEEeccCccccChhhHHH
Q 006015 476 TIACGCPDLEMINIAYLKDITD-SSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGC-KQLIKLDIKWCHNINDVGMLP 553 (664)
Q Consensus 476 ~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~ 553 (664)
..+..+++|++|++++|. +++ .....+..+++|++|++++| .++.. ++ ..+ ++|+.|++++| .++. +..
T Consensus 368 ~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~-~~---~~l~~~L~~L~Ls~N-~l~~--ip~ 438 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSN-ILTDT-IF---RCLPPRIKVLDLHSN-KIKS--IPK 438 (520)
T ss_dssp HHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSS-CCCGG-GG---GSCCTTCCEEECCSS-CCCC--CCG
T ss_pred HHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCC-CCCcc-hh---hhhcccCCEEECCCC-cccc--cch
Confidence 444555555555555555 443 22223445556666666665 33321 11 122 45666666666 3331 111
Q ss_pred HHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHH
Q 006015 554 LAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLN 599 (664)
Q Consensus 554 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~ 599 (664)
....+++|++|++++|+++... .. .+..+++|+.+++++|.++
T Consensus 439 ~~~~l~~L~~L~L~~N~l~~l~-~~--~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 439 QVVKLEALQELNVASNQLKSVP-DG--IFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp GGGGCTTCCEEECCSSCCCCCC-TT--TTTTCTTCCEEECCSSCBC
T ss_pred hhhcCCCCCEEECCCCcCCccC-HH--HhccCCcccEEECcCCCCc
Confidence 1123566666666666665422 11 1444455556666666654
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=4.2e-32 Score=291.36 Aligned_cols=372 Identities=12% Similarity=0.064 Sum_probs=261.0
Q ss_pred HHHHcCCCCCEEeccCCCCcCh---------------hhHHHHHh--ccCCCcEeecCCCCCCcHhHHHHhhcCCCccEE
Q 006015 246 ALKHRCKSLKALDMSSCQNISH---------------LGLSSLTS--SIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSI 308 (664)
Q Consensus 246 ~l~~~~~~L~~L~l~~~~~~~~---------------~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 308 (664)
.++. +++|++|++++|..... ..++..+. .+++|+.|++++| .+.+..|..+.++++|++|
T Consensus 201 ~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 201 AVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC-PNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC-TTCSSCCTTTTTCSSCCEE
T ss_pred HHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC-cCCccChHHHhcCCCCCEE
Confidence 3555 88999999988874431 01445555 8889999999988 6667778888899999999
Q ss_pred EecCCc-cCH-hHHHHHHh-----cCCCccEEEcCCCCCCCchhHHH--HHhhCCCccEEecCCCCCCChHHHHHHHhcC
Q 006015 309 KLDGSV-VTR-AGLKAIGD-----WCVSLKELSLSKCDGVTDEGLSY--VATKHRDLRKLDITCCRKISDVSITHVTSSC 379 (664)
Q Consensus 309 ~l~~~~-~~~-~~~~~l~~-----~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (664)
++++|. +++ ..+..+.. .+++|++|++++|. ++ .++. .+..+++|+.|++++|...... + .+..+
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~i--p-~~~~l 352 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK--TFPVETSLQKMKKLGMLECLYNQLEGKL--P-AFGSE 352 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS--SCCCHHHHTTCTTCCEEECCSCCCEEEC--C-CCEEE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC--ccCchhhhccCCCCCEEeCcCCcCccch--h-hhCCC
Confidence 999997 887 67777762 13899999999886 44 3444 6788899999999988743232 2 44667
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhhCCC-CCEEEccCCCCChhhHHhhccC--CCccEEcccCCCCCChHhHHHHhh---
Q 006015 380 TGLTSLRMESCTLVPREAFVLIGQRCRF-LEELDLTDNEIDDEGLKSISRC--SKLSVLKLGICLNITGEGLAHVGM--- 453 (664)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~l~~~~~~~l~~--- 453 (664)
++|+.|++++|... .....+. .+++ |++|++++|.+. ..+..+... ++|+.|++++| .++...+..+..
T Consensus 353 ~~L~~L~L~~N~l~--~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 353 IKLASLNLAYNQIT--EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEESEEECCSSEEE--ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSS-CTTTTTTCSSCTTCS
T ss_pred CCCCEEECCCCccc--cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCC-cCCCcchhhhccccc
Confidence 88999999887652 1222233 6777 999999999888 456666554 48999999999 777644333220
Q ss_pred ---CCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcC-------CCCCEEEccCCCCCCHH
Q 006015 454 ---CCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKC-------SRLNTFESRGCPLITSL 523 (664)
Q Consensus 454 ---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~-------~~L~~L~l~~~~~l~~~ 523 (664)
.+++|+.|++++|. ++ ......+..+++|++|++++|. ++......+... ++|+.|++++| .++.
T Consensus 428 ~~~~~~~L~~L~Ls~N~-l~-~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~- 502 (636)
T 4eco_A 428 TPFKGINVSSINLSNNQ-IS-KFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTK- 502 (636)
T ss_dssp SCCCCCCEEEEECCSSC-CC-SCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCB-
T ss_pred ccccCCCCCEEECcCCc-cC-cCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCc-
Confidence 45689999999987 55 2223455668999999999987 774333333322 38999999999 5664
Q ss_pred HHHHHHh--cCCcCcEEeccCccccChhhHHHHHhcCcccCeeee------ccCCCChhHHHHhhCCcccccceeeccCC
Q 006015 524 GLAAIAV--GCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINL------SYTSVTDVGLLSLASISCLQNMTILHLKG 595 (664)
Q Consensus 524 ~~~~~~~--~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l------~~n~l~~~~~~~l~~~~~L~~L~~l~l~~ 595 (664)
++..+. .+++|+.|++++|+ ++. +......+++|+.|++ ++|++.+..|..++. +++|+.+++++
T Consensus 503 -lp~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~---l~~L~~L~Ls~ 575 (636)
T 4eco_A 503 -LSDDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL---CPSLTQLQIGS 575 (636)
T ss_dssp -CCGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG---CSSCCEEECCS
T ss_pred -cChhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc---CCCCCEEECCC
Confidence 666665 88999999999994 332 2222334899999999 456677777666544 55666888999
Q ss_pred CCHHHHHHHHHhCCcccceeee-hhhcccCChhHHHHHHhcceEEEeecc
Q 006015 596 LSLNGLAAALLACGGITKVKLQ-AAFKQLLPQPLIDHLQARGCVFQWRNK 644 (664)
Q Consensus 596 n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~~~~~~~~~~~~~~~~~~ 644 (664)
|.+..+|..++ ++|+.|+++ |.+....+.............+.++..
T Consensus 576 N~l~~ip~~~~--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~ 623 (636)
T 4eco_A 576 NDIRKVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623 (636)
T ss_dssp SCCCBCCSCCC--TTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTT
T ss_pred CcCCccCHhHh--CcCCEEECcCCCCccccHHhcchhhhcccceeecCCc
Confidence 99987776543 899999999 877755545555555444445544433
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.8e-31 Score=288.81 Aligned_cols=372 Identities=12% Similarity=0.063 Sum_probs=263.9
Q ss_pred HHHcCCCCCEEeccCCCCcCh---------------hhHHHHHh--ccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEE
Q 006015 247 LKHRCKSLKALDMSSCQNISH---------------LGLSSLTS--SIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIK 309 (664)
Q Consensus 247 l~~~~~~L~~L~l~~~~~~~~---------------~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~ 309 (664)
++. +++|++|++++|..... ..++..+. .+++|+.|++++| .+.+..|..+.++++|+.|+
T Consensus 444 l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCSCCGGGGGCSSCCEEE
T ss_pred Hhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCccChHHHhCCCCCCEEE
Confidence 555 88999999998875431 01444444 8889999999988 66667788899999999999
Q ss_pred ecCCc-cCH-hHHHHHHh------cCCCccEEEcCCCCCCCchhHHH--HHhhCCCccEEecCCCCCCChHHHHHHHhcC
Q 006015 310 LDGSV-VTR-AGLKAIGD------WCVSLKELSLSKCDGVTDEGLSY--VATKHRDLRKLDITCCRKISDVSITHVTSSC 379 (664)
Q Consensus 310 l~~~~-~~~-~~~~~l~~------~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (664)
+++|. +++ ..+..+.. .+++|+.|++++|. +. .++. .+..+++|+.|++++|.. .. ++ .+..+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~--~ip~~~~l~~L~~L~~L~Ls~N~l-~~--lp-~~~~L 594 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LE--EFPASASLQKMVKLGLLDCVHNKV-RH--LE-AFGTN 594 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CC--BCCCHHHHTTCTTCCEEECTTSCC-CB--CC-CCCTT
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CC--ccCChhhhhcCCCCCEEECCCCCc-cc--ch-hhcCC
Confidence 99997 877 66666651 23489999999886 44 4444 678899999999998874 33 33 45678
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhhCCC-CCEEEccCCCCChhhHHhhccCC--CccEEcccCCCCCChHhHH---HHh-
Q 006015 380 TGLTSLRMESCTLVPREAFVLIGQRCRF-LEELDLTDNEIDDEGLKSISRCS--KLSVLKLGICLNITGEGLA---HVG- 452 (664)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~l~~~~~~---~l~- 452 (664)
++|+.|++++|... .....+. .+++ |+.|++++|.+. ..+..+...+ +|+.|++++| .+...... .+.
T Consensus 595 ~~L~~L~Ls~N~l~--~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE--EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDD 669 (876)
T ss_dssp SEESEEECCSSCCS--CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS-CTTTTSSSCSSCTTT
T ss_pred CcceEEECcCCccc--cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC-cCCCccccchhhhcc
Confidence 89999999987653 2222233 6777 999999999887 4555565543 4999999999 77653211 000
Q ss_pred hCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhh-------cCCCCCEEEccCCCCCCHHHH
Q 006015 453 MCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLS-------KCSRLNTFESRGCPLITSLGL 525 (664)
Q Consensus 453 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-------~~~~L~~L~l~~~~~l~~~~~ 525 (664)
..+++|+.|++++|. ++ .....++..+++|+.|++++|. ++......+. ++++|+.|+|++| .++. +
T Consensus 670 ~~~~~L~~L~Ls~N~-L~-~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~--l 743 (876)
T 4ecn_A 670 YKGINASTVTLSYNE-IQ-KFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTS--L 743 (876)
T ss_dssp CCCCCEEEEECCSSC-CC-SCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCC--C
T ss_pred ccCCCcCEEEccCCc-CC-ccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCC-CCcc--c
Confidence 024589999999987 55 2233445578999999999987 7743333222 2338999999999 6664 6
Q ss_pred HHHHh--cCCcCcEEeccCccccChhhHHHHHhcCcccCeeeecc------CCCChhHHHHhhCCcccccceeeccCCCC
Q 006015 526 AAIAV--GCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSY------TSVTDVGLLSLASISCLQNMTILHLKGLS 597 (664)
Q Consensus 526 ~~~~~--~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~------n~l~~~~~~~l~~~~~L~~L~~l~l~~n~ 597 (664)
+..+. .+++|+.|++++|+ ++. +......+++|+.|++++ |++.+..|..+.. +++|+.+++++|.
T Consensus 744 p~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~---L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 744 SDDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT---CPSLIQLQIGSND 817 (876)
T ss_dssp CGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGG---CSSCCEEECCSSC
T ss_pred hHHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhc---CCCCCEEECCCCC
Confidence 66665 88999999999994 433 222233589999999976 6677777665544 5566688899999
Q ss_pred HHHHHHHHHhCCcccceeee-hhhcccCChhHHHHHHhcceEEEeecccc
Q 006015 598 LNGLAAALLACGGITKVKLQ-AAFKQLLPQPLIDHLQARGCVFQWRNKVF 646 (664)
Q Consensus 598 ~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 646 (664)
+..+|..+ .++|+.|+|+ |.+....+.............+.++....
T Consensus 818 L~~Ip~~l--~~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 818 IRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCBCCSCC--CSSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred CCccCHhh--cCCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 97777664 3799999999 88886777776676666666666665443
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.3e-30 Score=283.56 Aligned_cols=354 Identities=16% Similarity=0.136 Sum_probs=197.5
Q ss_pred HcCCcCcEEeccCCCCCC-----------------chhhhhc--cCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEec
Q 006015 199 VKCKEIRSLDLSYLPITN-----------------KCLPSIL--KLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDM 259 (664)
Q Consensus 199 ~~~~~L~~L~l~~~~l~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l 259 (664)
.++++|+.|++++|.+++ .+|..++ ++++|+.|++++|...+..+ ..+.. +++|+.|++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~-L~~L~~L~L 522 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYD-LPELQSLNI 522 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGG-CSSCCEEEC
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhC-CCCCCEEEC
Confidence 356666666666666665 2555555 66666666666665444333 23444 666666666
Q ss_pred cCCCCcChhhHHHHHhcc-------CCCcEeecCCCCCCcHhHHH--HhhcCCCccEEEecCCccCHhHHHHHHhcCCCc
Q 006015 260 SSCQNISHLGLSSLTSSI-------GGLQQLTLAHGSPVTLSIAN--GLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSL 330 (664)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (664)
++|.......++..+..+ ++|+.|+++++ .+. .+|. .+..+++|+.|++++|.+. ..+ .+. .+++|
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~-~L~~L 597 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFG-TNVKL 597 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCC-TTSEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhc-CCCcc
Confidence 666522221233333333 36666666666 444 4444 5666666666666666655 333 333 55666
Q ss_pred cEEEcCCCCCCCchhHHHHHhhCCC-ccEEecCCCCCCChHHHHHHHhcC--CCCcEEEcCCCCCCCHHH-H-HHHH-hh
Q 006015 331 KELSLSKCDGVTDEGLSYVATKHRD-LRKLDITCCRKISDVSITHVTSSC--TGLTSLRMESCTLVPREA-F-VLIG-QR 404 (664)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~-~-~~~~-~~ 404 (664)
+.|++++|. +. .++..+..+++ |+.|++++|.. .. ++..+... ++|+.|++++|....... + ..+. -.
T Consensus 598 ~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~L-~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 598 TDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNKL-KY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYK 671 (876)
T ss_dssp SEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSCC-CS--CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCC
T ss_pred eEEECcCCc-cc--cchHHHhhccccCCEEECcCCCC-Cc--CchhhhccccCCCCEEECcCCcCCCccccchhhhcccc
Confidence 666666664 32 23333455566 66666666652 21 22222222 236677776655421000 0 0000 02
Q ss_pred CCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhh-------CCCCCcEEEcCCCCCCChHHHHHH
Q 006015 405 CRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGM-------CCSKLKELDLYRCVGITDSGILTI 477 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~~~~~~ 477 (664)
+++|+.|++++|.+.......+..+++|+.|++++| .++.. +..+.. ++++|+.|++++|. ++ .++..
T Consensus 672 ~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~i-p~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~--~lp~~ 746 (876)
T 4ecn_A 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSI-PENSLKPKDGNYKNTYLLTTIDLRFNK-LT--SLSDD 746 (876)
T ss_dssp CCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCC-CTTSSSCTTSCCTTGGGCCEEECCSSC-CC--CCCGG
T ss_pred CCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCcc-ChHHhccccccccccCCccEEECCCCC-Cc--cchHH
Confidence 346777777777776433334446777777777777 66632 111111 12377788887776 54 33444
Q ss_pred Hh--cCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCC-----CCCHHHHHHHHhcCCcCcEEeccCccccChhh
Q 006015 478 AC--GCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCP-----LITSLGLAAIAVGCKQLIKLDIKWCHNINDVG 550 (664)
Q Consensus 478 ~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~-----~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~ 550 (664)
+. .+++|+.|++++|. +++ .+..+..+++|+.|++++|+ .+.. .++..+.++++|+.|++++|+ ++.
T Consensus 747 l~~~~l~~L~~L~Ls~N~-L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~-~ip~~l~~L~~L~~L~Ls~N~-L~~-- 820 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNC-FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR-QWPTGITTCPSLIQLQIGSND-IRK-- 820 (876)
T ss_dssp GSTTTCTTCCEEECCSSC-CSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC-CCCTTGGGCSSCCEEECCSSC-CCB--
T ss_pred hhhccCCCcCEEEeCCCC-CCc-cchhhhcCCCCCEEECCCCCCcccccccc-cChHHHhcCCCCCEEECCCCC-CCc--
Confidence 43 67788888888876 665 35566677888888886632 2222 145566778888888888884 332
Q ss_pred HHHHHhcCcccCeeeeccCCCChhHHHH
Q 006015 551 MLPLAHFSQNLRQINLSYTSVTDVGLLS 578 (664)
Q Consensus 551 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 578 (664)
+|.. ..++|+.|+|++|++....+..
T Consensus 821 -Ip~~-l~~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 821 -VDEK-LTPQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp -CCSC-CCSSSCEEECCSCTTCEEECGG
T ss_pred -cCHh-hcCCCCEEECCCCCCCccChHH
Confidence 2221 2468888888888876654333
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=9.9e-32 Score=285.84 Aligned_cols=106 Identities=25% Similarity=0.100 Sum_probs=47.0
Q ss_pred cCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCC
Q 006015 200 KCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGG 279 (664)
Q Consensus 200 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (664)
.+++|++|++++|.+++..+..+..+++|++|++++|.... .+.. . +++|++|++++|.... ..++..+..+++
T Consensus 74 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~---~-l~~L~~L~Ls~N~l~~-l~~p~~~~~l~~ 147 (562)
T 3a79_B 74 FLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC---P-MASLRHLDLSFNDFDV-LPVCKEFGNLTK 147 (562)
T ss_dssp TCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC---C-CTTCSEEECCSSCCSB-CCCCGGGGGCTT
T ss_pred cCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc---c-cccCCEEECCCCCccc-cCchHhhcccCc
Confidence 44555555555555554444445555555555555544321 1110 1 4555555555544221 111223444555
Q ss_pred CcEeecCCCCCCcHhHHHHhhcCCCc--cEEEecCCcc
Q 006015 280 LQQLTLAHGSPVTLSIANGLKKLSML--QSIKLDGSVV 315 (664)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 315 (664)
|+.|+++++ .+... .+..+++| +.|++++|.+
T Consensus 148 L~~L~L~~n-~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 148 LTFLGLSAA-KFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEEEEECS-BCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred ccEEecCCC-ccccC---chhhhhhceeeEEEeecccc
Confidence 555555554 33321 22223333 5555555544
No 27
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=7.8e-31 Score=281.53 Aligned_cols=329 Identities=15% Similarity=0.120 Sum_probs=160.7
Q ss_pred hhhhhc--cCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhcc------CCCcEeecCCCC
Q 006015 218 CLPSIL--KLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSI------GGLQQLTLAHGS 289 (664)
Q Consensus 218 ~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~------~~L~~L~l~~~~ 289 (664)
+|..++ ++++|++|++++|...+..+ ..++. +++|++|++++|.......++..+..+ ++|+.|+++++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n- 315 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN- 315 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTT-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-
T ss_pred CchhhhhcccCCCCEEEecCCcCCccCh-HHHhc-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-
Confidence 444444 45555555555544333222 12333 455555555554422211233333332 45555555554
Q ss_pred CCcHhHHH--HhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCC-ccEEecCCCCC
Q 006015 290 PVTLSIAN--GLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRD-LRKLDITCCRK 366 (664)
Q Consensus 290 ~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~ 366 (664)
.+. .+|. .+..+++|+.|++++|.+.+..+ .+. .+++|++|++++|. +. .++..+..+++ |++|++++|..
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~l 389 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNKL 389 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE-EEEEESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSCC
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC-CCCCCCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCcC
Confidence 333 3333 45555555555555554443333 222 34455555555543 21 22222344444 55555555442
Q ss_pred CChHHHHHHHhc--CCCCcEEEcCCCCCCCHHHHHHHH------hhCCCCCEEEccCCCCChhhHHhhccCCCccEEccc
Q 006015 367 ISDVSITHVTSS--CTGLTSLRMESCTLVPREAFVLIG------QRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLG 438 (664)
Q Consensus 367 ~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 438 (664)
+. ++..+.. +++|+.|++++|.... .....+. -.+++|++|++++|.+.......+..+++|+.|+++
T Consensus 390 -~~--lp~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 390 -KY--IPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp -SS--CCSCCCTTCSSCEEEEECCSSCTTT-TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred -cc--cchhhhhcccCccCEEECcCCcCCC-cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence 21 1111111 2245555555544311 0000000 023466666666666664333334446666666666
Q ss_pred CCCCCChHhHHHHhhC-------CCCCcEEEcCCCCCCChHHHHHHHh--cCCCCCEEeccCCCCCCHHHHHhhhcCCCC
Q 006015 439 ICLNITGEGLAHVGMC-------CSKLKELDLYRCVGITDSGILTIAC--GCPDLEMINIAYLKDITDSSLLSLSKCSRL 509 (664)
Q Consensus 439 ~~~~l~~~~~~~l~~~-------~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 509 (664)
+| .++.. ....... +++|+.|++++|. ++ .++..+. .+++|++|++++|. +++ .+..+..+++|
T Consensus 466 ~N-~l~~i-~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~~~l~~L~~L~Ls~N~-l~~-ip~~~~~l~~L 538 (636)
T 4eco_A 466 GN-MLTEI-PKNSLKDENENFKNTYLLTSIDLRFNK-LT--KLSDDFRATTLPYLVGIDLSYNS-FSK-FPTQPLNSSTL 538 (636)
T ss_dssp SS-CCSBC-CSSSSEETTEECTTGGGCCEEECCSSC-CC--BCCGGGSTTTCTTCCEEECCSSC-CSS-CCCGGGGCSSC
T ss_pred CC-CCCCc-CHHHhccccccccccCCccEEECcCCc-CC--ccChhhhhccCCCcCEEECCCCC-CCC-cChhhhcCCCC
Confidence 66 55532 1111111 1267777777766 44 2333333 56777777777776 665 45566677777
Q ss_pred CEEEccC------CCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCCh
Q 006015 510 NTFESRG------CPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTD 573 (664)
Q Consensus 510 ~~L~l~~------~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 573 (664)
+.|++++ |..... ++..+.++++|++|++++|+ ++.. |.. ..++|+.|++++|++..
T Consensus 539 ~~L~Ls~N~~ls~N~l~~~--~p~~l~~l~~L~~L~Ls~N~-l~~i---p~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 539 KGFGIRNQRDAQGNRTLRE--WPEGITLCPSLTQLQIGSND-IRKV---NEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp CEEECCSCBCTTCCBCCCC--CCTTGGGCSSCCEEECCSSC-CCBC---CSC-CCTTCCEEECCSCTTCE
T ss_pred CEEECCCCcccccCccccc--ChHHHhcCCCCCEEECCCCc-CCcc---CHh-HhCcCCEEECcCCCCcc
Confidence 7777744 322222 45556678888888888884 3322 211 23788888888887554
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=8.7e-31 Score=284.73 Aligned_cols=530 Identities=15% Similarity=0.065 Sum_probs=301.0
Q ss_pred ccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCC
Q 006015 97 TSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCK 176 (664)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (664)
-.+++++|+|++|.. +..+...+. .+++|+.|++++| .+.......|..+++|++|+|++|. ++... ...+.+++
T Consensus 50 lp~~~~~LdLs~N~i-~~l~~~~f~-~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~-~~~f~~L~ 124 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPL-RHLGSYSFF-SFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLA-LGAFSGLS 124 (635)
T ss_dssp SCTTCCEEECTTSCC-CEECTTTTT-TCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEEC-GGGGTTCT
T ss_pred CCcCCCEEEeeCCCC-CCCCHHHHh-CCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc-CCCCC-HHHhcCCC
Confidence 345788888888753 332222232 6778888888877 5655555667777888888888776 44433 23344577
Q ss_pred CcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCC-chhhhhccCCCcceEeccCCCCCCH--HHHHHHHHcCCC
Q 006015 177 NLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITN-KCLPSILKLQHLEDLILEGCFGIDD--CSLAALKHRCKS 253 (664)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~~~~~ 253 (664)
+|++|++++| .+...+...+ ..+++|++|++++|.+.. ..+..++.+++|++|++++|..... ..+..+......
T Consensus 125 ~L~~L~Ls~N-~l~~l~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 125 SLQKLVAVET-NLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp TCCEEECTTS-CCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCEEECCCC-cCCCCChhhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 7788877777 3443333222 367777777777777654 3456666777777777777654332 222233331123
Q ss_pred CCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCcc------CHhHHHHHHhcC
Q 006015 254 LKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVV------TRAGLKAIGDWC 327 (664)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~------~~~~~~~l~~~~ 327 (664)
...++++.+..... +........++.+.+..+..........+..+..++...+..... .......+. ..
T Consensus 203 ~~~~~ls~n~l~~i---~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~-~~ 278 (635)
T 4g8a_A 203 NLSLDLSLNPMNFI---QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE-GL 278 (635)
T ss_dssp CCEEECTTCCCCEE---CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG-GG
T ss_pred hhhhhcccCccccc---CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc-cc
Confidence 34566665543211 111112233455666555222233445566666666555532211 110111111 22
Q ss_pred CCccEEEcCCCC-CCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCC
Q 006015 328 VSLKELSLSKCD-GVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCR 406 (664)
Q Consensus 328 ~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 406 (664)
..+....+.... ..........+....+++.+.+.++..... .. ......++.|++.+|...... ...++
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~-~~~~~~L~~L~l~~~~~~~~~-----~~~l~ 349 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV---KD-FSYNFGWQHLELVNCKFGQFP-----TLKLK 349 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC---GG-GGSCCCCSEEEEESCEESSCC-----CCBCT
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc---cc-cccchhhhhhhcccccccCcC-----cccch
Confidence 233333322211 011111222234556677777766542111 11 234667888888776542110 01456
Q ss_pred CCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHh--HHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCC
Q 006015 407 FLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEG--LAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDL 484 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (664)
.|+.+++..+..... .....+++|+.|++++| .+.... ..... .+.+|+.+++..+.... +...+..+++|
T Consensus 350 ~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~-~~~~L~~L~~~~~~~~~---~~~~~~~l~~L 422 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRN-GLSFKGCCSQSDF-GTISLKYLDLSFNGVIT---MSSNFLGLEQL 422 (635)
T ss_dssp TCCEEEEESCCSCCB--CCCCBCTTCCEEECCSS-CCBEEEECCHHHH-SCSCCCEEECCSCSEEE---ECSCCTTCTTC
T ss_pred hhhhcccccccCCCC--cccccccccccchhhcc-ccccccccccchh-hhhhhhhhhcccccccc---ccccccccccc
Confidence 778888777655442 23345788888888887 554322 22233 67788888888765321 22233457888
Q ss_pred CEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCee
Q 006015 485 EMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQI 564 (664)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L 564 (664)
+.+++.++..........+..+++++.++++.| .+... .+..+..++.|+.|++++|...... .......+++|++|
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFL 499 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEE
T ss_pred cchhhhhcccccccccccccccccccccccccc-ccccc-cccccccchhhhhhhhhhccccccc-CchhhhhccccCEE
Confidence 888888776344334455667888888888887 33321 3445567788888888888532211 11122336788888
Q ss_pred eeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCcccceeee-hhhcccCChhHHHH-HHhcceEEEe
Q 006015 565 NLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGITKVKLQ-AAFKQLLPQPLIDH-LQARGCVFQW 641 (664)
Q Consensus 565 ~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~-n~~~~~~p~~~~~~-~~~~~~~~~~ 641 (664)
++++|++++..|..| .++++|+.+++++|.++++++..+. +++|+.|+|+ |.+.+..|..+... ..++..+++.
T Consensus 500 ~Ls~N~L~~l~~~~f---~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 500 DLSQCQLEQLSPTAF---NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp ECTTSCCCEECTTTT---TTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTT
T ss_pred ECCCCccCCcChHHH---cCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeC
Confidence 888888887666554 4455666888888888888766555 8888888888 88886666554333 2456677777
Q ss_pred ecccccccCCc-ccccccc
Q 006015 642 RNKVFQAELDP-KSWKLLL 659 (664)
Q Consensus 642 ~~~~~~~~~~~-~~~~~~~ 659 (664)
|++.|+|...+ ..|..+.
T Consensus 577 Np~~C~C~~~~~~~wl~~~ 595 (635)
T 4g8a_A 577 NDFACTCEHQSFLQWIKDQ 595 (635)
T ss_dssp CCBCCSGGGHHHHHHHHHT
T ss_pred CCCcccCCcHHHHHHHHhC
Confidence 77776665444 4465443
No 29
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.95 E-value=7e-27 Score=231.92 Aligned_cols=294 Identities=21% Similarity=0.243 Sum_probs=165.0
Q ss_pred cccccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhhccccccccccHHHHHhhCCCCcEeeccCCCCCChh
Q 006015 9 KINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRKKLKPLRQEHLPAVLIRYSNTTHLDLSLYPRINDH 88 (664)
Q Consensus 9 ~~~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~ 88 (664)
+...|++||+|++.+||+ ||+ .+++.++++|||+|++++.... .++.++++++ .+.+.
T Consensus 5 ~~~~~~~LP~eil~~If~-~L~-~~d~~~~~~vc~~W~~~~~~~~-------------------~~~~l~l~~~-~~~~~ 62 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASDES-------------------LWQTLDLTGK-NLHPD 62 (336)
T ss_dssp --CCSSSSCHHHHHHHHT-TSC-HHHHHHTTSSCHHHHHHHTCST-------------------TSSEEECTTC-BCCHH
T ss_pred ccCChhhCCHHHHHHHHH-hCC-HHHHHHHHHHHHHHHHHhcCch-------------------hheeeccccc-cCCHH
Confidence 456799999999999999 999 9999999999999999965321 2567777763 33332
Q ss_pred HHHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHH
Q 006015 89 SLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGV 168 (664)
Q Consensus 89 ~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 168 (664)
.. .....++++.++++++....... .+. .+++|++|++++| . +++.++
T Consensus 63 ~~---~~~~~~~l~~L~l~~n~l~~~~~--~~~-~~~~L~~L~L~~~-------------------------~-l~~~~~ 110 (336)
T 2ast_B 63 VT---GRLLSQGVIAFRCPRSFMDQPLA--EHF-SPFRVQHMDLSNS-------------------------V-IEVSTL 110 (336)
T ss_dssp HH---HHHHHTTCSEEECTTCEECSCCC--SCC-CCBCCCEEECTTC-------------------------E-ECHHHH
T ss_pred HH---HhhhhccceEEEcCCccccccch--hhc-cCCCCCEEEccCC-------------------------C-cCHHHH
Confidence 22 22123566666666654221111 011 3444555555544 3 333333
Q ss_pred HHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCC-CCCCc-hhhhhccCCCcceEeccCCCCCCHHHH-H
Q 006015 169 GCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYL-PITNK-CLPSILKLQHLEDLILEGCFGIDDCSL-A 245 (664)
Q Consensus 169 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~-~ 245 (664)
..+...+++|++|++++| .+.+.....+ ..+++|++|++++| .+++. .+..+..+++|++|++++|..+++..+ .
T Consensus 111 ~~~~~~~~~L~~L~L~~~-~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 188 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGL-RLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 188 (336)
T ss_dssp HHHHTTBCCCSEEECTTC-BCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCc-ccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence 444444444444444444 2222222222 23455555555554 34432 223344455555555555523333222 2
Q ss_pred HHHHcCC-CCCEEeccCCC-CcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCC-ccCHhHHHH
Q 006015 246 ALKHRCK-SLKALDMSSCQ-NISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGS-VVTRAGLKA 322 (664)
Q Consensus 246 ~l~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~ 322 (664)
.+.. ++ +|++|++++|. ......++..+..+++|+.|+++++..+++..+..+..+++|+.|++++| .+.+.....
T Consensus 189 ~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 189 AVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 2333 66 66666666664 34444555666666777777776663355555666777777777777777 454544444
Q ss_pred HHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCC
Q 006015 323 IGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCR 365 (664)
Q Consensus 323 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 365 (664)
+. .+++|+.|++++| +++..+..+...++.|+ +++|.
T Consensus 268 l~-~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L~---l~~n~ 304 (336)
T 2ast_B 268 LG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ---INCSH 304 (336)
T ss_dssp GG-GCTTCCEEECTTS--SCTTCHHHHHHHSTTSE---ESCCC
T ss_pred Hh-cCCCCCEEeccCc--cCHHHHHHHHhhCcceE---Eeccc
Confidence 55 5777888888777 66556655554555554 55444
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=4.1e-29 Score=265.66 Aligned_cols=179 Identities=12% Similarity=0.095 Sum_probs=96.5
Q ss_pred CCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCCh-HHHHHHHhcCCC
Q 006015 405 CRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITD-SGILTIACGCPD 483 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~ 483 (664)
..+|++|+++++.+.... ....+++|+.|++++| .+++..+..+. .+++|++|++++|. ++. ..++..+..+++
T Consensus 330 ~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQN-VFTDSVFQGCS-TLKRLQTLILQRNG-LKNFFKVALMTKNMSS 404 (562)
T ss_dssp TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS-CCCTTTTTTCC-SCSSCCEEECCSSC-CCBTTHHHHTTTTCTT
T ss_pred cCcceEEEccCCCccccc--CccCCCCceEEECCCC-ccccchhhhhc-ccCCCCEEECCCCC-cCCcccchhhhcCCCC
Confidence 345666666666554321 1134566666666666 55553333333 56666666666665 432 133444555666
Q ss_pred CCEEeccCCCCCCH-HHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcC-CcCcEEeccCccccChhhHHHHHhcCccc
Q 006015 484 LEMINIAYLKDITD-SSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGC-KQLIKLDIKWCHNINDVGMLPLAHFSQNL 561 (664)
Q Consensus 484 L~~L~l~~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~~~~~~~~L 561 (664)
|++|++++|. +++ .....+..+++|+.|++++| .+++. .+..+ ++|++|++++| .++.. .+....+++|
T Consensus 405 L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~----~~~~l~~~L~~L~L~~N-~l~~i--p~~~~~l~~L 475 (562)
T 3a79_B 405 LETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSN-MLTGS----VFRCLPPKVKVLDLHNN-RIMSI--PKDVTHLQAL 475 (562)
T ss_dssp CCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSS-CCCGG----GGSSCCTTCSEEECCSS-CCCCC--CTTTTSSCCC
T ss_pred CCEEECCCCc-CCCccChhhhcCcccCCEEECCCC-CCCcc----hhhhhcCcCCEEECCCC-cCccc--ChhhcCCCCC
Confidence 6666666665 544 33333555667777777776 34331 12233 46777777777 33321 1111246677
Q ss_pred CeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHH
Q 006015 562 RQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNG 600 (664)
Q Consensus 562 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~ 600 (664)
+.|++++|+++.. |.. .+..+++|+.+++++|.+.+
T Consensus 476 ~~L~L~~N~l~~l-~~~--~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 476 QELNVASNQLKSV-PDG--VFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp SEEECCSSCCCCC-CTT--STTTCTTCCCEECCSCCBCC
T ss_pred CEEECCCCCCCCC-CHH--HHhcCCCCCEEEecCCCcCC
Confidence 7777777777642 222 14445555667777776653
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=8e-27 Score=241.75 Aligned_cols=346 Identities=20% Similarity=0.229 Sum_probs=166.3
Q ss_pred CCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCC
Q 006015 175 CKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSL 254 (664)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (664)
+++|+.|++.++ .+...+. ...+++|++|++++|.+++..+ +.++++|++|++++|......+ +.. +++|
T Consensus 45 l~~l~~L~l~~~-~i~~l~~---~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~-l~~L 114 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKSIDG---VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LAN-LTNL 114 (466)
T ss_dssp HHTCCEEECCSS-CCCCCTT---GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTT-CTTC
T ss_pred hccccEEecCCC-CCccCcc---hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh---hcC-CCCC
Confidence 345666666655 2332221 1355666666666665554322 5556666666666554443322 333 5555
Q ss_pred CEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEE
Q 006015 255 KALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELS 334 (664)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (664)
++|++++|..... . .+..+++|++|++++|.+.... .+. .+++|++|+
T Consensus 115 ~~L~L~~n~l~~~---------------------------~--~~~~l~~L~~L~l~~n~l~~~~--~~~-~l~~L~~L~ 162 (466)
T 1o6v_A 115 TGLTLFNNQITDI---------------------------D--PLKNLTNLNRLELSSNTISDIS--ALS-GLTSLQQLS 162 (466)
T ss_dssp CEEECCSSCCCCC---------------------------G--GGTTCTTCSEEEEEEEEECCCG--GGT-TCTTCSEEE
T ss_pred CEEECCCCCCCCC---------------------------h--HHcCCCCCCEEECCCCccCCCh--hhc-cCCcccEee
Confidence 5555555543221 1 1444455555555555443321 122 445555555
Q ss_pred cCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEcc
Q 006015 335 LSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLT 414 (664)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (664)
+.++ +.. .. .+..+++|+.|++++|.. ... ..+..+++|++|++++|....... +. .+++|++|+++
T Consensus 163 l~~~--~~~--~~-~~~~l~~L~~L~l~~n~l-~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~-~l~~L~~L~l~ 229 (466)
T 1o6v_A 163 FGNQ--VTD--LK-PLANLTTLERLDISSNKV-SDI---SVLAKLTNLESLIATNNQISDITP---LG-ILTNLDELSLN 229 (466)
T ss_dssp EEES--CCC--CG-GGTTCTTCCEEECCSSCC-CCC---GGGGGCTTCSEEECCSSCCCCCGG---GG-GCTTCCEEECC
T ss_pred cCCc--ccC--ch-hhccCCCCCEEECcCCcC-CCC---hhhccCCCCCEEEecCCccccccc---cc-ccCCCCEEECC
Confidence 5432 111 11 134555555555555542 211 113345555555555544321111 12 45566666666
Q ss_pred CCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCC
Q 006015 415 DNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKD 494 (664)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 494 (664)
+|.+.+. ..+..+++|+.|++++| .++.... + ..+++|++|++++|. ++.. .. +..+++|++|++++|.
T Consensus 230 ~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~-~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~L~~n~- 298 (466)
T 1o6v_A 230 GNQLKDI--GTLASLTNLTDLDLANN-QISNLAP--L-SGLTKLTELKLGANQ-ISNI--SP-LAGLTALTNLELNENQ- 298 (466)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSS-CCCCCGG--G-TTCTTCSEEECCSSC-CCCC--GG-GTTCTTCSEEECCSSC-
T ss_pred CCCcccc--hhhhcCCCCCEEECCCC-ccccchh--h-hcCCCCCEEECCCCc-cCcc--cc-ccCCCccCeEEcCCCc-
Confidence 6555542 34455566666666666 5544322 2 255666666666655 3321 11 3455666666666655
Q ss_pred CCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChh
Q 006015 495 ITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDV 574 (664)
Q Consensus 495 l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 574 (664)
+++... +..+++|+.|++++| .+++. .+ +..+++|++|++++| .++.. +....+++|+.|++++|++++.
T Consensus 299 l~~~~~--~~~l~~L~~L~L~~n-~l~~~-~~--~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 299 LEDISP--ISNLKNLTYLTLYFN-NISDI-SP--VSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CSCCGG--GGGCTTCSEEECCSS-CCSCC-GG--GGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSCCCBC
T ss_pred ccCchh--hcCCCCCCEEECcCC-cCCCc-hh--hccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCCccCcc
Confidence 443322 455666666666666 33331 11 345566666666666 23322 1222356666666666666554
Q ss_pred HHHHhhCCcccccceeeccCCCCHHHH
Q 006015 575 GLLSLASISCLQNMTILHLKGLSLNGL 601 (664)
Q Consensus 575 ~~~~l~~~~~L~~L~~l~l~~n~~~~~ 601 (664)
.| +..+++|+.+++++|.+++.
T Consensus 369 ~~-----~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 369 TP-----LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp GG-----GTTCTTCCEEECCCEEEECC
T ss_pred ch-----hhcCCCCCEEeccCCcccCC
Confidence 43 33334444555555555543
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=6e-29 Score=257.98 Aligned_cols=374 Identities=16% Similarity=0.127 Sum_probs=203.4
Q ss_pred CcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCc
Q 006015 202 KEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQ 281 (664)
Q Consensus 202 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (664)
++|++|++++|.+++..+..++++++|++|++++|......+...+.. +++|++|++++|..... .+..+..+++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~-l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~ 106 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG-LSSLIILKLDYNQFLQL--ETGAFNGLANLE 106 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT-CTTCCEEECTTCTTCEE--CTTTTTTCTTCC
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccc-cccCCEEeCCCCccCcc--ChhhccCcccCC
Confidence 567777777777776666677777777777777765543322223444 66677777766653221 122344555566
Q ss_pred EeecCCCCCCcHhHHHH--hhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhC--CCcc
Q 006015 282 QLTLAHGSPVTLSIANG--LKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKH--RDLR 357 (664)
Q Consensus 282 ~L~l~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~ 357 (664)
.|+++++ .+.+..+.. +..+++|++|++++|.+....+..+...+++|++|++++|. +.... +..+..+ .+|+
T Consensus 107 ~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~l~~l~~~~L~ 183 (455)
T 3v47_A 107 VLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSIC-EEDLLNFQGKHFT 183 (455)
T ss_dssp EEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCC-TTTSGGGTTCEEE
T ss_pred EEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccC-hhhhhcccccccc
Confidence 6666555 444433333 55556666666666655443333212245555555555543 11100 0001111 3344
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccC---CCccE
Q 006015 358 KLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRC---SKLSV 434 (664)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~ 434 (664)
.|+++++...... . ..+.......+. .+++|++|++++|.+.+..+..+... ++|+.
T Consensus 184 ~L~l~~n~l~~~~-~------------------~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~ 243 (455)
T 3v47_A 184 LLRLSSITLQDMN-E------------------YWLGWEKCGNPF-KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243 (455)
T ss_dssp EEECTTCBCTTCS-T------------------TCTTHHHHCCTT-TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEE
T ss_pred ccccccCcccccc-h------------------hhcccccccccc-ccceeeeEecCCCcccccchhhhhccccccceee
Confidence 4444433311000 0 000000000011 23455555555555555444444332 45555
Q ss_pred EcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEc
Q 006015 435 LKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFES 514 (664)
Q Consensus 435 L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l 514 (664)
|++++| ....... ....+..+ ... .+.. ..+++|++|++++|. +++..+..+..+++|++|++
T Consensus 244 L~l~~~-~~~~~~~-----~~~~~~~~-----~~~---~~~~--~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 306 (455)
T 3v47_A 244 LILSNS-YNMGSSF-----GHTNFKDP-----DNF---TFKG--LEASGVKTCDLSKSK-IFALLKSVFSHFTDLEQLTL 306 (455)
T ss_dssp EECTTC-TTTSCCT-----TCCSSCCC-----CTT---TTGG--GTTSCCCEEECCSSC-CCEECTTTTTTCTTCCEEEC
T ss_pred Eeeccc-ccccccc-----chhhhccC-----ccc---cccc--ccccCceEEEecCcc-ccccchhhcccCCCCCEEEC
Confidence 555555 2211100 00000000 000 0000 123678888888877 77666777778888888888
Q ss_pred cCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccC
Q 006015 515 RGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLK 594 (664)
Q Consensus 515 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~ 594 (664)
++| .++.. .+..+.++++|++|++++| .++..... ....+++|++|++++|++++..+..+ ..+++|+.++++
T Consensus 307 s~n-~l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~L~ 379 (455)
T 3v47_A 307 AQN-EINKI-DDNAFWGLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSYNHIRALGDQSF---LGLPNLKELALD 379 (455)
T ss_dssp TTS-CCCEE-CTTTTTTCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCSSCCCEECTTTT---TTCTTCCEEECC
T ss_pred CCC-ccccc-ChhHhcCcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCCCcccccChhhc---cccccccEEECC
Confidence 888 45442 3445667888888888888 44332211 22347889999999999888666554 445566688889
Q ss_pred CCCHHHHHHHHHh-CCcccceeee-hhhcccCC
Q 006015 595 GLSLNGLAAALLA-CGGITKVKLQ-AAFKQLLP 625 (664)
Q Consensus 595 ~n~~~~~~~~~~~-~~~L~~l~l~-n~~~~~~p 625 (664)
+|.++.+++..+. +++|+.|+++ |.+.+..|
T Consensus 380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999888876654 8999999999 99998888
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=4.9e-26 Score=235.86 Aligned_cols=346 Identities=19% Similarity=0.202 Sum_probs=218.1
Q ss_pred hcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCC
Q 006015 148 EAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQH 227 (664)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~ 227 (664)
.+++++.|++.++. +... +. ...+++|++|++++|. +...+. ...+++|++|++++|.+.+..+ +.++++
T Consensus 44 ~l~~l~~L~l~~~~-i~~l--~~-~~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 113 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-IKSI--DG-VEYLNNLTQINFSNNQ-LTDITP---LKNLTKLVDILMNNNQIADITP--LANLTN 113 (466)
T ss_dssp HHHTCCEEECCSSC-CCCC--TT-GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred HhccccEEecCCCC-CccC--cc-hhhhcCCCEEECCCCc-cCCchh---hhccccCCEEECCCCccccChh--hcCCCC
Confidence 45789999999987 4432 22 3459999999999994 444443 2589999999999999886554 889999
Q ss_pred cceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccE
Q 006015 228 LEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQS 307 (664)
Q Consensus 228 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~ 307 (664)
|++|++++|......+ +.. +++|++|++++|...... .+..+++|+.|++++. .... ..+..+++|+.
T Consensus 114 L~~L~L~~n~l~~~~~---~~~-l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~~--~~~~--~~~~~l~~L~~ 181 (466)
T 1o6v_A 114 LTGLTLFNNQITDIDP---LKN-LTNLNRLELSSNTISDIS----ALSGLTSLQQLSFGNQ--VTDL--KPLANLTTLER 181 (466)
T ss_dssp CCEEECCSSCCCCCGG---GTT-CTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEEES--CCCC--GGGTTCTTCCE
T ss_pred CCEEECCCCCCCCChH---HcC-CCCCCEEECCCCccCCCh----hhccCCcccEeecCCc--ccCc--hhhccCCCCCE
Confidence 9999999987665432 555 999999999998754421 2566777777777543 2221 12666677777
Q ss_pred EEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEc
Q 006015 308 IKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRM 387 (664)
Q Consensus 308 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 387 (664)
|+++++.+.... .+. .+++|++|++++|. +.... . +..+++|++|++++|.
T Consensus 182 L~l~~n~l~~~~--~l~-~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~---------------------- 232 (466)
T 1o6v_A 182 LDISSNKVSDIS--VLA-KLTNLESLIATNNQ-ISDIT--P-LGILTNLDELSLNGNQ---------------------- 232 (466)
T ss_dssp EECCSSCCCCCG--GGG-GCTTCSEEECCSSC-CCCCG--G-GGGCTTCCEEECCSSC----------------------
T ss_pred EECcCCcCCCCh--hhc-cCCCCCEEEecCCc-ccccc--c-ccccCCCCEEECCCCC----------------------
Confidence 777776654321 122 45566666666554 22111 0 3344555555555443
Q ss_pred CCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCC
Q 006015 388 ESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCV 467 (664)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 467 (664)
.... ..+. .+++|++|++++|.+.+..+ +..+++|+.|++++| .++.... +. .+++|+.|++++|.
T Consensus 233 ----l~~~---~~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~~-~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 233 ----LKDI---GTLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGAN-QISNISP--LA-GLTALTNLELNENQ 298 (466)
T ss_dssp ----CCCC---GGGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSS-CCCCCGG--GT-TCTTCSEEECCSSC
T ss_pred ----cccc---hhhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCC-ccCcccc--cc-CCCccCeEEcCCCc
Confidence 2111 1122 55666666666666555332 556666777777766 5555322 22 56777777777665
Q ss_pred CCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccC
Q 006015 468 GITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNIN 547 (664)
Q Consensus 468 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 547 (664)
+++. .. +..+++|++|++++|. +++..+ +..+++|+.|++++| .+++. ..+.++++|++|++++|+ ++
T Consensus 299 -l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~-l~ 366 (466)
T 1o6v_A 299 -LEDI--SP-ISNLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNN-KVSDV---SSLANLTNINWLSAGHNQ-IS 366 (466)
T ss_dssp -CSCC--GG-GGGCTTCSEEECCSSC-CSCCGG--GGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CC
T ss_pred -ccCc--hh-hcCCCCCCEEECcCCc-CCCchh--hccCccCCEeECCCC-ccCCc---hhhccCCCCCEEeCCCCc-cC
Confidence 4321 11 4566777777777776 654433 566777777777777 44442 245577788888888774 33
Q ss_pred hhhHHHHHhcCcccCeeeeccCCCCh
Q 006015 548 DVGMLPLAHFSQNLRQINLSYTSVTD 573 (664)
Q Consensus 548 ~~~~~~~~~~~~~L~~L~l~~n~l~~ 573 (664)
+. .+ ...+++|+.|++++|++++
T Consensus 367 ~~--~~-~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 367 DL--TP-LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp BC--GG-GTTCTTCCEEECCCEEEEC
T ss_pred cc--ch-hhcCCCCCEEeccCCcccC
Confidence 22 23 3447888888888887765
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.94 E-value=3.9e-29 Score=271.74 Aligned_cols=515 Identities=16% Similarity=0.102 Sum_probs=316.8
Q ss_pred CCcEeeccCCCCCChhHHHHHhhhccCccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCC
Q 006015 73 NTTHLDLSLYPRINDHSLFAISKITSFTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNL 152 (664)
Q Consensus 73 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L 152 (664)
.+++|++++ +.+.......+. .+++|++|+|++|.. ...+..++ ..+++|++|++++| .+.......|..+++|
T Consensus 53 ~~~~LdLs~-N~i~~l~~~~f~--~l~~L~~L~Ls~N~i-~~i~~~~f-~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSYSFF--SFPELQVLDLSRCEI-QTIEDGAY-QSLSHLSTLILTGN-PIQSLALGAFSGLSSL 126 (635)
T ss_dssp TCCEEECTT-SCCCEECTTTTT--TCTTCCEEECTTCCC-CEECTTTT-TTCTTCCEEECTTC-CCCEECGGGGTTCTTC
T ss_pred CCCEEEeeC-CCCCCCCHHHHh--CCCCCCEEECCCCcC-CCcChhHh-cCCCCCCEEEccCC-cCCCCCHHHhcCCCCC
Confidence 599999997 456544433333 688999999999964 33322223 37899999999999 5766666788999999
Q ss_pred cEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcc---
Q 006015 153 EKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLE--- 229 (664)
Q Consensus 153 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~--- 229 (664)
++|++++|. ++... ...+..+++|++|++++|. +...........+++|++|++++|.+++..+..+..+.+++
T Consensus 127 ~~L~Ls~N~-l~~l~-~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 127 QKLVAVETN-LASLE-NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp CEEECTTSC-CCCST-TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CEEECCCCc-CCCCC-hhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 999999997 54432 2224568999999999984 33322212225789999999999999887777776655443
Q ss_pred -eEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCC-----CCCcHhHHHHhhcCC
Q 006015 230 -DLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHG-----SPVTLSIANGLKKLS 303 (664)
Q Consensus 230 -~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-----~~~~~~~~~~l~~l~ 303 (664)
.++++.+...... .. ... ...++.+++.++. .........+..+..++...+... ..+.......+....
T Consensus 204 ~~~~ls~n~l~~i~-~~-~~~-~~~~~~l~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQ-PG-AFK-EIRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp CEEECTTCCCCEEC-TT-TTT-TCEEEEEEEESCC-SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhcccCcccccC-cc-ccc-chhhhhhhhhccc-ccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 5666665443211 11 111 4556778887764 233334556777777776665321 011111222333444
Q ss_pred CccEEEecCCccC---HhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCC
Q 006015 304 MLQSIKLDGSVVT---RAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCT 380 (664)
Q Consensus 304 ~L~~L~l~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (664)
.+....+..+... ......+. ...+++.+.+..+.... +. .+.....++.|++.++...... ...++
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~---~~-~~~~~~~L~~L~l~~~~~~~~~-----~~~l~ 349 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFN-CLTNVSSFSLVSVTIER---VK-DFSYNFGWQHLELVNCKFGQFP-----TLKLK 349 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTG-GGTTCSEEEEESCEEEE---CG-GGGSCCCCSEEEEESCEESSCC-----CCBCT
T ss_pred chhhhhhhhhhhcccccchhhhhh-hhccccccccccccccc---cc-ccccchhhhhhhcccccccCcC-----cccch
Confidence 4444444433211 11111111 44667777776654111 11 1245667888887776421110 12466
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChh--hHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCC
Q 006015 381 GLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDE--GLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKL 458 (664)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 458 (664)
.|+.+.+..+...... .. ..+++|+.++++.+.+... .+..+....+|+.+++..+ .+.... ..+ ..+++|
T Consensus 350 ~L~~l~l~~n~~~~~~---~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~-~~~~~~-~~~-~~l~~L 422 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNAF---SE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN-GVITMS-SNF-LGLEQL 422 (635)
T ss_dssp TCCEEEEESCCSCCBC---CC-CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSC-SEEEEC-SCC-TTCTTC
T ss_pred hhhhcccccccCCCCc---cc-ccccccccchhhccccccccccccchhhhhhhhhhhcccc-cccccc-ccc-cccccc
Confidence 7777777765432111 11 1567888888888766442 2344455778888888777 443321 112 257888
Q ss_pred cEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEE
Q 006015 459 KELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKL 538 (664)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (664)
+.+++.++.... ......+..+++++.+++++|. +.......+..+++|+.|++++|..... ..+..+..+++|++|
T Consensus 423 ~~l~l~~~~~~~-~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~Ls~N~~~~~-~~~~~~~~l~~L~~L 499 (635)
T 4g8a_A 423 EHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQEN-FLPDIFTELRNLTFL 499 (635)
T ss_dssp CEEECTTSEEES-TTSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGG-EECSCCTTCTTCCEE
T ss_pred cchhhhhccccc-cccccccccccccccccccccc-cccccccccccchhhhhhhhhhcccccc-cCchhhhhccccCEE
Confidence 888887765322 1222334567788888888877 6666666677788888888888743322 134456678888888
Q ss_pred eccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-C-Ccccceee
Q 006015 539 DIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-C-GGITKVKL 616 (664)
Q Consensus 539 ~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~-~~L~~l~l 616 (664)
++++|+ ++.... .....+++|++|+|++|++++..+.. +..+++|+.+++++|.++++++..+. + ++|+.|+|
T Consensus 500 ~Ls~N~-L~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 500 DLSQCQ-LEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFP---YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp ECTTSC-CCEECT-TTTTTCTTCCEEECTTSCCCBCCCGG---GTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred ECCCCc-cCCcCh-HHHcCCCCCCEEECCCCcCCCCChhH---HhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 888883 333221 11234788888888888888765544 44455666888888888887665544 4 67888888
Q ss_pred e-hhhcccCC
Q 006015 617 Q-AAFKQLLP 625 (664)
Q Consensus 617 ~-n~~~~~~p 625 (664)
+ |++...-.
T Consensus 575 ~~Np~~C~C~ 584 (635)
T 4g8a_A 575 TQNDFACTCE 584 (635)
T ss_dssp TTCCBCCSGG
T ss_pred eCCCCcccCC
Confidence 8 77765433
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.3e-27 Score=247.79 Aligned_cols=317 Identities=15% Similarity=0.068 Sum_probs=150.5
Q ss_pred cCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHH-HHHHcCCCCCEEeccCCCCcChhhHHHHHhccC
Q 006015 200 KCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLA-ALKHRCKSLKALDMSSCQNISHLGLSSLTSSIG 278 (664)
Q Consensus 200 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (664)
.+++|++|++++|.+++..+..+.++++|++|++++|...+..+.. .+.. +++|++|++++|...... ....+..++
T Consensus 77 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~-~~~~~~~l~ 154 (455)
T 3v47_A 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP-LTSLEMLVLRDNNIKKIQ-PASFFLNMR 154 (455)
T ss_dssp TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTT-CTTCCEEECCSSBCCSCC-CCGGGGGCT
T ss_pred ccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccC-cccCCEEECCCCccCccC-cccccCCCC
Confidence 4566666666666665555556666666666666665544322111 1333 566666666655432210 011234455
Q ss_pred CCcEeecCCCCCCcHhHHHHhhcC--CCccEEEecCCccCHhHHHH--------HHhcCCCccEEEcCCCCCCCchhHHH
Q 006015 279 GLQQLTLAHGSPVTLSIANGLKKL--SMLQSIKLDGSVVTRAGLKA--------IGDWCVSLKELSLSKCDGVTDEGLSY 348 (664)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~--------l~~~~~~L~~L~l~~~~~~~~~~~~~ 348 (664)
+|+.|+++++ .+.+..+..+..+ .+|+.|+++++.+....... +. .+++|++|++++|. +.......
T Consensus 155 ~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~n~-l~~~~~~~ 231 (455)
T 3v47_A 155 RFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF-KNTSITTLDLSGNG-FKESMAKR 231 (455)
T ss_dssp TCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT-TTCEEEEEECTTSC-CCHHHHHH
T ss_pred cccEEeCCCC-cccccChhhhhccccccccccccccCcccccchhhcccccccccc-ccceeeeEecCCCc-ccccchhh
Confidence 5555555554 3333333333333 35555555555443211100 01 22344455554443 22111111
Q ss_pred HHh--hCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhh
Q 006015 349 VAT--KHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSI 426 (664)
Q Consensus 349 ~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 426 (664)
+.. ..++|+.|++++|...... + ....+..+ . ...+. ....++|++|++++|.+.+..+..+
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~-~-----~~~~~~~~-----~---~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~ 295 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSS-F-----GHTNFKDP-----D---NFTFK--GLEASGVKTCDLSKSKIFALLKSVF 295 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCC-T-----TCCSSCCC-----C---TTTTG--GGTTSCCCEEECCSSCCCEECTTTT
T ss_pred hhccccccceeeEeeccccccccc-c-----chhhhccC-----c---ccccc--cccccCceEEEecCccccccchhhc
Confidence 111 1144444444444321110 0 00000000 0 00000 0024577777777777776666667
Q ss_pred ccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcC
Q 006015 427 SRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKC 506 (664)
Q Consensus 427 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 506 (664)
..+++|+.|++++| .+++.....+. .+++|++|++++|. ++. ..+..+..+++|++|++++|. +++..+..+..+
T Consensus 296 ~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l 370 (455)
T 3v47_A 296 SHFTDLEQLTLAQN-EINKIDDNAFW-GLTHLLKLNLSQNF-LGS-IDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGL 370 (455)
T ss_dssp TTCTTCCEEECTTS-CCCEECTTTTT-TCTTCCEEECCSSC-CCE-ECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred ccCCCCCEEECCCC-cccccChhHhc-CcccCCEEECCCCc-cCC-cChhHhcCcccCCEEECCCCc-ccccChhhcccc
Confidence 77777777777777 66654333333 56666666666665 432 122334456666666666665 555555556666
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCcc
Q 006015 507 SRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCH 544 (664)
Q Consensus 507 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 544 (664)
++|++|++++| .++.. .+..+..+++|++|++++|+
T Consensus 371 ~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 371 PNLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp TTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ccccEEECCCC-ccccC-CHhHhccCCcccEEEccCCC
Confidence 66666666666 33331 12233455555555555554
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=7.6e-25 Score=218.22 Aligned_cols=280 Identities=19% Similarity=0.166 Sum_probs=126.3
Q ss_pred cCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCC
Q 006015 200 KCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGG 279 (664)
Q Consensus 200 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (664)
.+++|++|+++++.+... +.+..+++|++|++++|......+ +.. +++|++|++++|.....
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~---~~~-l~~L~~L~L~~n~i~~~------------ 103 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP---LSN-LVKLTNLYIGTNKITDI------------ 103 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG---GTT-CTTCCEEECCSSCCCCC------------
T ss_pred hcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh---hhc-CCcCCEEEccCCcccCc------------
Confidence 456777777777665532 235556666666666654433221 333 55555555555432211
Q ss_pred CcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEE
Q 006015 280 LQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKL 359 (664)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (664)
..+..+++|++|++++|.+..... +. .+++|++|++++|....... .+..+++|++|
T Consensus 104 -----------------~~~~~l~~L~~L~l~~n~i~~~~~--~~-~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L 160 (347)
T 4fmz_A 104 -----------------SALQNLTNLRELYLNEDNISDISP--LA-NLTKMYSLNLGANHNLSDLS---PLSNMTGLNYL 160 (347)
T ss_dssp -----------------GGGTTCTTCSEEECTTSCCCCCGG--GT-TCTTCCEEECTTCTTCCCCG---GGTTCTTCCEE
T ss_pred -----------------hHHcCCCcCCEEECcCCcccCchh--hc-cCCceeEEECCCCCCccccc---chhhCCCCcEE
Confidence 124455555555555555443222 22 45566666665554332111 13455555555
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccC
Q 006015 360 DITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGI 439 (664)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (664)
++++|....... +..+++|+.|++++|....... + ..+++|+.++++++.+.+... +..+++|+.|++++
T Consensus 161 ~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~-~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~ 230 (347)
T 4fmz_A 161 TVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP---L-ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGN 230 (347)
T ss_dssp ECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG---G-GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred EecCCCcCCchh----hccCCCCCEEEccCCccccccc---c-cCCCccceeecccCCCCCCch--hhcCCcCCEEEccC
Confidence 555554222111 2344555555555443321111 1 144555555555554444322 44455555555555
Q ss_pred CCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCC
Q 006015 440 CLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPL 519 (664)
Q Consensus 440 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 519 (664)
| .+++... ...+++|++|++++|. +++. ..+..+++|++|++++|. +++. ..+..+++|+.|++++| .
T Consensus 231 n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~L~~n-~ 298 (347)
T 4fmz_A 231 N-KITDLSP---LANLSQLTWLEIGTNQ-ISDI---NAVKDLTKLKMLNVGSNQ-ISDI--SVLNNLSQLNSLFLNNN-Q 298 (347)
T ss_dssp S-CCCCCGG---GTTCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEECCSSC-CCCC--GGGGGCTTCSEEECCSS-C
T ss_pred C-ccCCCcc---hhcCCCCCEEECCCCc-cCCC---hhHhcCCCcCEEEccCCc-cCCC--hhhcCCCCCCEEECcCC-c
Confidence 5 4443222 2244555555555543 3221 122334445555555443 3332 23344444444444444 2
Q ss_pred CCHHHHHHHHhcCCcCcEEeccCc
Q 006015 520 ITSLGLAAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 520 l~~~~~~~~~~~~~~L~~L~l~~~ 543 (664)
++.. .+..+..+++|++|++++|
T Consensus 299 l~~~-~~~~l~~l~~L~~L~L~~n 321 (347)
T 4fmz_A 299 LGNE-DMEVIGGLTNLTTLFLSQN 321 (347)
T ss_dssp CCGG-GHHHHHTCTTCSEEECCSS
T ss_pred CCCc-ChhHhhccccCCEEEccCC
Confidence 3221 2233344444444444444
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.1e-24 Score=217.02 Aligned_cols=303 Identities=20% Similarity=0.211 Sum_probs=162.3
Q ss_pred CCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCc
Q 006015 251 CKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSL 330 (664)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (664)
+++|++|+++++...... .+..+++|+.|+++++ .+.+..+ +..+++|++|++++|.+... ..+. .+++|
T Consensus 43 l~~L~~L~l~~~~i~~~~----~~~~~~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~-~l~~L 112 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQ----GIEYLTNLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTNKITDI--SALQ-NLTNL 112 (347)
T ss_dssp HTTCSEEECCSSCCCCCT----TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGT-TCTTC
T ss_pred cccccEEEEeCCccccch----hhhhcCCccEEEccCC-ccccchh--hhcCCcCCEEEccCCcccCc--hHHc-CCCcC
Confidence 455555555554432211 1344555555555555 3332222 66677777777777766543 2343 67778
Q ss_pred cEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCE
Q 006015 331 KELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEE 410 (664)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (664)
++|++++|. +... .. +..+++|+.|++++|........ +..+++|+.|++++|....... + ..+++|++
T Consensus 113 ~~L~l~~n~-i~~~--~~-~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~---~-~~l~~L~~ 181 (347)
T 4fmz_A 113 RELYLNEDN-ISDI--SP-LANLTKMYSLNLGANHNLSDLSP---LSNMTGLNYLTVTESKVKDVTP---I-ANLTDLYS 181 (347)
T ss_dssp SEEECTTSC-CCCC--GG-GTTCTTCCEEECTTCTTCCCCGG---GTTCTTCCEEECCSSCCCCCGG---G-GGCTTCSE
T ss_pred CEEECcCCc-ccCc--hh-hccCCceeEEECCCCCCcccccc---hhhCCCCcEEEecCCCcCCchh---h-ccCCCCCE
Confidence 888877765 3321 11 55677777777777754443211 4556677777776655432211 2 25666777
Q ss_pred EEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEecc
Q 006015 411 LDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIA 490 (664)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 490 (664)
|++++|.+.+... +..+++|+.|++++| .+++... + ..+++|++|++++|. +++.. . +..+++|++|+++
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~--~-~~~~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVN-QITDITP--V-ANMTRLNSLKIGNNK-ITDLS--P-LANLSQLTWLEIG 251 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCGG--G-GGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECC
T ss_pred EEccCCccccccc--ccCCCccceeecccC-CCCCCch--h-hcCCcCCEEEccCCc-cCCCc--c-hhcCCCCCEEECC
Confidence 7776666655332 555666666666666 5554322 2 256666666666665 33211 1 4556666666666
Q ss_pred CCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCC
Q 006015 491 YLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTS 570 (664)
Q Consensus 491 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~ 570 (664)
+|. +++. ..+..+++|+.|++++| .++.. ..+..+++|++|++++| .++......+ ..+++|+.|++++|+
T Consensus 252 ~n~-l~~~--~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~L~~n-~l~~~~~~~l-~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 252 TNQ-ISDI--NAVKDLTKLKMLNVGSN-QISDI---SVLNNLSQLNSLFLNNN-QLGNEDMEVI-GGLTNLTTLFLSQNH 322 (347)
T ss_dssp SSC-CCCC--GGGTTCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSS-CCCGGGHHHH-HTCTTCSEEECCSSS
T ss_pred CCc-cCCC--hhHhcCCCcCEEEccCC-ccCCC---hhhcCCCCCCEEECcCC-cCCCcChhHh-hccccCCEEEccCCc
Confidence 665 5432 34555666666666666 34331 23445666666666666 3333332222 235666666666666
Q ss_pred CChhHHHHhhCCcccccceeeccCCCCH
Q 006015 571 VTDVGLLSLASISCLQNMTILHLKGLSL 598 (664)
Q Consensus 571 l~~~~~~~l~~~~~L~~L~~l~l~~n~~ 598 (664)
+++..+ +..+++|+.+++++|.+
T Consensus 323 l~~~~~-----~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 323 ITDIRP-----LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCCCGG-----GGGCTTCSEESSSCC--
T ss_pred cccccC-----hhhhhccceeehhhhcc
Confidence 655433 33344444555555554
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.6e-26 Score=235.42 Aligned_cols=285 Identities=14% Similarity=0.162 Sum_probs=148.2
Q ss_pred hccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCC
Q 006015 275 SSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHR 354 (664)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 354 (664)
..+++|+.|+++++ .+.+. .+..+++|++|++++|.+... .+. .+++|++|++++|..+.... +..++
T Consensus 103 ~~l~~L~~L~L~~N-~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~-~l~~L~~L~l~~n~~~~~~~----~~~l~ 170 (457)
T 3bz5_A 103 TPLTKLTYLNCDTN-KLTKL---DVSQNPLLTYLNCARNTLTEI---DVS-HNTQLTELDCHLNKKITKLD----VTPQT 170 (457)
T ss_dssp TTCTTCCEEECCSS-CCSCC---CCTTCTTCCEEECTTSCCSCC---CCT-TCTTCCEEECTTCSCCCCCC----CTTCT
T ss_pred CCCCcCCEEECCCC-cCCee---cCCCCCcCCEEECCCCcccee---ccc-cCCcCCEEECCCCCcccccc----cccCC
Confidence 33444444444444 33221 144555555555555555432 122 45566666666554333221 34556
Q ss_pred CccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccE
Q 006015 355 DLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSV 434 (664)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (664)
+|+.|++++|.. +... +..+++|+.|++++|..... .+. .+++|++|++++|++.+. + +..+++|+.
T Consensus 171 ~L~~L~ls~n~l-~~l~----l~~l~~L~~L~l~~N~l~~~----~l~-~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~ 237 (457)
T 3bz5_A 171 QLTTLDCSFNKI-TELD----VSQNKLLNRLNCDTNNITKL----DLN-QNIQLTFLDCSSNKLTEI-D--VTPLTQLTY 237 (457)
T ss_dssp TCCEEECCSSCC-CCCC----CTTCTTCCEEECCSSCCSCC----CCT-TCTTCSEEECCSSCCSCC-C--CTTCTTCSE
T ss_pred cCCEEECCCCcc-ceec----cccCCCCCEEECcCCcCCee----ccc-cCCCCCEEECcCCccccc-C--ccccCCCCE
Confidence 666666666542 2211 34556666666666544221 122 566677777776666652 2 556666777
Q ss_pred EcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEc
Q 006015 435 LKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFES 514 (664)
Q Consensus 435 L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l 514 (664)
|++++| .++... ...+++|+.|+++++ +|+.|++++|..+.... +..+++|+.|++
T Consensus 238 L~l~~N-~l~~~~----~~~l~~L~~L~l~~n----------------~L~~L~l~~n~~~~~~~---~~~l~~L~~L~L 293 (457)
T 3bz5_A 238 FDCSVN-PLTELD----VSTLSKLTTLHCIQT----------------DLLEIDLTHNTQLIYFQ---AEGCRKIKELDV 293 (457)
T ss_dssp EECCSS-CCSCCC----CTTCTTCCEEECTTC----------------CCSCCCCTTCTTCCEEE---CTTCTTCCCCCC
T ss_pred EEeeCC-cCCCcC----HHHCCCCCEEeccCC----------------CCCEEECCCCccCCccc---ccccccCCEEEC
Confidence 777766 665532 124555555554432 23344444443111111 223444444444
Q ss_pred cCCCCCCHHHHHH--------HHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccc
Q 006015 515 RGCPLITSLGLAA--------IAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQ 586 (664)
Q Consensus 515 ~~~~~l~~~~~~~--------~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 586 (664)
++|+.++. ++. .+.++++|++|++++|+ ++.. + ...+++|+.|++++|++++ +++|.
T Consensus 294 s~n~~l~~--l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l---~-l~~l~~L~~L~l~~N~l~~--------l~~L~ 358 (457)
T 3bz5_A 294 THNTQLYL--LDCQAAGITELDLSQNPKLVYLYLNNTE-LTEL---D-VSHNTKLKSLSCVNAHIQD--------FSSVG 358 (457)
T ss_dssp TTCTTCCE--EECTTCCCSCCCCTTCTTCCEEECTTCC-CSCC---C-CTTCTTCSEEECCSSCCCB--------CTTGG
T ss_pred CCCcccce--eccCCCcceEechhhcccCCEEECCCCc-cccc---c-cccCCcCcEEECCCCCCCC--------ccccc
Confidence 44432211 000 01233677788888773 3332 2 3347788888888888775 23333
Q ss_pred cceeeccCCCCHHHHHHHHHhCCcccceeee-hhhcccCChhHHH
Q 006015 587 NMTILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQLLPQPLID 630 (664)
Q Consensus 587 ~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~~~~ 630 (664)
.+++.+|.+.+. ..+..|+.++++ |.++|.+|..+..
T Consensus 359 ---~L~l~~n~l~g~----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 359 ---KIPALNNNFEAE----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp ---GSSGGGTSEEEE----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ---cccccCCcEEec----ceeeecCccccccCcEEEEcChhHhc
Confidence 344556666544 246778889999 9999999987444
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=1.6e-25 Score=229.48 Aligned_cols=204 Identities=17% Similarity=0.173 Sum_probs=93.9
Q ss_pred CCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCc
Q 006015 124 CKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKE 203 (664)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (664)
+++|++|++++| .+... +.+..+++|++|++++|. ++..+ ...+++|++|++++|. +...+ ...+++
T Consensus 41 l~~L~~L~Ls~n-~l~~~--~~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDM--TGIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-LTNLD----VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSS-CCCCC--TTGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCCC----CTTCTT
T ss_pred cCCCCEEEccCC-CcccC--hhhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-Cceee----cCCCCc
Confidence 345555555554 22221 134445555555555554 33321 2234555555555552 22222 135555
Q ss_pred CcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEe
Q 006015 204 IRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQL 283 (664)
Q Consensus 204 L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (664)
|++|++++|.+++. + ++.+++|++|++++|..... .+.. +++|++|++++|...... .+..+++|+.|
T Consensus 108 L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l----~l~~-l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L 175 (457)
T 3bz5_A 108 LTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI----DVSH-NTQLTELDCHLNKKITKL----DVTPQTQLTTL 175 (457)
T ss_dssp CCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC----CCTT-CTTCCEEECTTCSCCCCC----CCTTCTTCCEE
T ss_pred CCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee----cccc-CCcCCEEECCCCCccccc----ccccCCcCCEE
Confidence 66666655555542 1 45555566666555544331 1233 555555555555333221 12344455555
Q ss_pred ecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCC
Q 006015 284 TLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITC 363 (664)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 363 (664)
+++++ .+.+. + +..+++|+.|++++|.+... .+. .+++|+.|++++|. ++. ++ +..+++|+.|++++
T Consensus 176 ~ls~n-~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~-~l~~L~~L~Ls~N~-l~~--ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 176 DCSFN-KITEL-D--VSQNKLLNRLNCDTNNITKL---DLN-QNIQLTFLDCSSNK-LTE--ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp ECCSS-CCCCC-C--CTTCTTCCEEECCSSCCSCC---CCT-TCTTCSEEECCSSC-CSC--CC--CTTCTTCSEEECCS
T ss_pred ECCCC-cccee-c--cccCCCCCEEECcCCcCCee---ccc-cCCCCCEEECcCCc-ccc--cC--ccccCCCCEEEeeC
Confidence 55554 33321 1 44455555555555554432 122 44555555555554 222 11 34455555555555
Q ss_pred CC
Q 006015 364 CR 365 (664)
Q Consensus 364 ~~ 365 (664)
|.
T Consensus 243 N~ 244 (457)
T 3bz5_A 243 NP 244 (457)
T ss_dssp SC
T ss_pred Cc
Confidence 54
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.91 E-value=3.9e-27 Score=241.28 Aligned_cols=401 Identities=15% Similarity=0.131 Sum_probs=205.5
Q ss_pred CCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcC
Q 006015 125 KNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEI 204 (664)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (664)
.+|++|+++++ .++ ..+..+..+++|++|++++|. +... ++.....+++|+.+++.+| ...++
T Consensus 11 ~~L~~L~l~~n-~l~-~iP~~i~~L~~L~~L~l~~n~-~~~~-~p~~~~~l~~L~~l~l~~c-------------~~~~l 73 (454)
T 1jl5_A 11 TFLQEPLRHSS-NLT-EMPVEAENVKSKTEYYNAWSE-WERN-APPGNGEQREMAVSRLRDC-------------LDRQA 73 (454)
T ss_dssp -------------------------CCHHHHHHHHHH-HHHT-SCTTSCCCHHHHHHHHHHH-------------HHHTC
T ss_pred ccchhhhcccC-chh-hCChhHhcccchhhhhccCCc-cccc-CCcccccchhcchhhhhhh-------------hccCC
Confidence 45666666665 333 344556666777777766654 2110 0111111222322233222 12446
Q ss_pred cEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEee
Q 006015 205 RSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLT 284 (664)
Q Consensus 205 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (664)
++|+++++.+++ .|. -.++|+.|++++|...+.. ...++|++|++++|....... ..++|+.|+
T Consensus 74 ~~L~l~~~~l~~-lp~---~~~~L~~L~l~~n~l~~lp------~~~~~L~~L~l~~n~l~~l~~------~~~~L~~L~ 137 (454)
T 1jl5_A 74 HELELNNLGLSS-LPE---LPPHLESLVASCNSLTELP------ELPQSLKSLLVDNNNLKALSD------LPPLLEYLG 137 (454)
T ss_dssp SEEECTTSCCSC-CCS---CCTTCSEEECCSSCCSSCC------CCCTTCCEEECCSSCCSCCCS------CCTTCCEEE
T ss_pred CEEEecCCcccc-CCC---CcCCCCEEEccCCcCCccc------cccCCCcEEECCCCccCcccC------CCCCCCEEE
Confidence 666666665553 111 1256666666665544311 114567777776665432111 114677777
Q ss_pred cCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCC
Q 006015 285 LAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCC 364 (664)
Q Consensus 285 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (664)
++++ .+.+ ++ .+..+++|++|++++|.+... + ...++|++|++++|. +.. ++ .+..+++|+.|++++|
T Consensus 138 L~~n-~l~~-lp-~~~~l~~L~~L~l~~N~l~~l-p----~~~~~L~~L~L~~n~-l~~--l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 138 VSNN-QLEK-LP-ELQNSSFLKIIDVDNNSLKKL-P----DLPPSLEFIAAGNNQ-LEE--LP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCSS-CCSS-CC-CCTTCTTCCEEECCSSCCSCC-C----CCCTTCCEEECCSSC-CSS--CC-CCTTCTTCCEEECCSS
T ss_pred CcCC-CCCC-Cc-ccCCCCCCCEEECCCCcCccc-C----CCcccccEEECcCCc-CCc--Cc-cccCCCCCCEEECCCC
Confidence 7776 4443 33 477777888888888776531 1 133578888888775 332 22 2567788888888877
Q ss_pred CCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCC
Q 006015 365 RKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNIT 444 (664)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (664)
.... ++ ...++|+.|++++|.... +..+. .+++|++|++++|++... +. ..++|+.|++++| .++
T Consensus 206 ~l~~---l~---~~~~~L~~L~l~~n~l~~---lp~~~-~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N-~l~ 270 (454)
T 1jl5_A 206 SLKK---LP---DLPLSLESIVAGNNILEE---LPELQ-NLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDN-YLT 270 (454)
T ss_dssp CCSS---CC---CCCTTCCEEECCSSCCSS---CCCCT-TCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSS-CCS
T ss_pred cCCc---CC---CCcCcccEEECcCCcCCc---ccccC-CCCCCCEEECCCCcCCcc-cc---cccccCEEECCCC-ccc
Confidence 6322 11 123578888888875421 11233 788888999988877652 11 2478899999988 776
Q ss_pred hHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcC-CCCCEEEccCCCCCCHH
Q 006015 445 GEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKC-SRLNTFESRGCPLITSL 523 (664)
Q Consensus 445 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~-~~L~~L~l~~~~~l~~~ 523 (664)
.. ...+++|++|++++|. ++. ++ .-.++|++|++++|. +++ +..+ ++|+.|++++| .++.
T Consensus 271 ~l-----~~~~~~L~~L~ls~N~-l~~--l~---~~~~~L~~L~l~~N~-l~~-----i~~~~~~L~~L~Ls~N-~l~~- 331 (454)
T 1jl5_A 271 DL-----PELPQSLTFLDVSENI-FSG--LS---ELPPNLYYLNASSNE-IRS-----LCDLPPSLEELNVSNN-KLIE- 331 (454)
T ss_dssp CC-----CCCCTTCCEEECCSSC-CSE--ES---CCCTTCCEEECCSSC-CSE-----ECCCCTTCCEEECCSS-CCSC-
T ss_pred cc-----CcccCcCCEEECcCCc-cCc--cc---CcCCcCCEEECcCCc-CCc-----ccCCcCcCCEEECCCC-cccc-
Confidence 52 1245789999999887 542 11 113689999999987 664 3344 48999999998 4543
Q ss_pred HHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCCh--hHHHHhhCCcccccceeeccCCCCHHHH
Q 006015 524 GLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTD--VGLLSLASISCLQNMTILHLKGLSLNGL 601 (664)
Q Consensus 524 ~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~~l~l~~n~~~~~ 601 (664)
++. .+++|++|++++|. ++.... .+++|+.|++++|++++ ..|..+ ..|.. ++....+
T Consensus 332 -lp~---~~~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~L~~N~l~~l~~ip~~l------~~L~~----n~~~~~i 391 (454)
T 1jl5_A 332 -LPA---LPPRLERLIASFNH-LAEVPE-----LPQNLKQLHVEYNPLREFPDIPESV------EDLRM----NSHLAEV 391 (454)
T ss_dssp -CCC---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSCCSSCCCCCTTC------CEEEC----CC-----
T ss_pred -ccc---cCCcCCEEECCCCc-cccccc-----hhhhccEEECCCCCCCcCCCChHHH------Hhhhh----ccccccc
Confidence 332 36889999999984 443221 46899999999999887 333322 22221 2222233
Q ss_pred HHHHHhCCcccceeee-hhhcc--cCChh
Q 006015 602 AAALLACGGITKVKLQ-AAFKQ--LLPQP 627 (664)
Q Consensus 602 ~~~~~~~~~L~~l~l~-n~~~~--~~p~~ 627 (664)
|. .+++|+.|+++ |.+.+ .+|..
T Consensus 392 ~~---~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 392 PE---LPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp -----------------------------
T ss_pred cc---ccCcCCEEECCCCcCCccccchhh
Confidence 32 14788888888 87776 66665
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=2.9e-25 Score=227.44 Aligned_cols=347 Identities=13% Similarity=0.080 Sum_probs=161.2
Q ss_pred CCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCc-------------ceEeccCCCCCCH
Q 006015 175 CKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHL-------------EDLILEGCFGIDD 241 (664)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L-------------~~L~l~~~~~~~~ 241 (664)
..+|++|+++++ .++.+|..+ .++++|++|++++|.+.+..|..++++++| ++|++++|...+.
T Consensus 10 ~~~L~~L~l~~n-~l~~iP~~i--~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSS-NLTEMPVEA--ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred cccchhhhcccC-chhhCChhH--hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 355666666665 335555443 467777777777777666677777766655 6666666554331
Q ss_pred HHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcC-CCccEEEecCCccCHhHH
Q 006015 242 CSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKL-SMLQSIKLDGSVVTRAGL 320 (664)
Q Consensus 242 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~ 320 (664)
.. ..++|++|++++|.... ++ ...++|+.|+++++ .+.+ +... ++|++|++++|.+.. .+
T Consensus 87 p~------~~~~L~~L~l~~n~l~~---lp---~~~~~L~~L~l~~n-~l~~-----l~~~~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 87 PE------LPPHLESLVASCNSLTE---LP---ELPQSLKSLLVDNN-NLKA-----LSDLPPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp CS------CCTTCSEEECCSSCCSS---CC---CCCTTCCEEECCSS-CCSC-----CCSCCTTCCEEECCSSCCSS-CC
T ss_pred CC------CcCCCCEEEccCCcCCc---cc---cccCCCcEEECCCC-ccCc-----ccCCCCCCCEEECcCCCCCC-Cc
Confidence 11 14566666666655332 11 12356666666665 3332 1112 466666666665543 22
Q ss_pred HHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHH
Q 006015 321 KAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVL 400 (664)
Q Consensus 321 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 400 (664)
.+. .+++|++|++++|. +.. ++ ...++|++|++++|.. ... +. +..+++|+.|++++|....
T Consensus 148 -~~~-~l~~L~~L~l~~N~-l~~--lp---~~~~~L~~L~L~~n~l-~~l--~~-~~~l~~L~~L~l~~N~l~~------ 209 (454)
T 1jl5_A 148 -ELQ-NSSFLKIIDVDNNS-LKK--LP---DLPPSLEFIAAGNNQL-EEL--PE-LQNLPFLTAIYADNNSLKK------ 209 (454)
T ss_dssp -CCT-TCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCC-SSC--CC-CTTCTTCCEEECCSSCCSS------
T ss_pred -ccC-CCCCCCEEECCCCc-Ccc--cC---CCcccccEEECcCCcC-CcC--cc-ccCCCCCCEEECCCCcCCc------
Confidence 233 55666666666654 221 11 1224666666666542 221 11 3455666666666654321
Q ss_pred HHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhc
Q 006015 401 IGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACG 480 (664)
Q Consensus 401 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 480 (664)
+....++|++|++++|.+.. .+ .++.+++|+.|++++| .++.. ...+++|+.|++++|. ++. ++ ..
T Consensus 210 l~~~~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N-~l~~l-----~~~~~~L~~L~l~~N~-l~~--l~---~~ 275 (454)
T 1jl5_A 210 LPDLPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNN-LLKTL-----PDLPPSLEALNVRDNY-LTD--LP---EL 275 (454)
T ss_dssp CCCCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS-CCSSC-----CSCCTTCCEEECCSSC-CSC--CC---CC
T ss_pred CCCCcCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCC-cCCcc-----cccccccCEEECCCCc-ccc--cC---cc
Confidence 00122456666666665552 22 3555666666666666 55431 1123566666666655 331 11 12
Q ss_pred CCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcC-CcCcEEeccCccccChhhHHHHHhcCc
Q 006015 481 CPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGC-KQLIKLDIKWCHNINDVGMLPLAHFSQ 559 (664)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~~~~~~~ 559 (664)
.++|++|++++|. +++.. .-.++|+.|++++| .++. + ..+ ++|++|++++|+ ++.. + ..++
T Consensus 276 ~~~L~~L~ls~N~-l~~l~----~~~~~L~~L~l~~N-~l~~--i----~~~~~~L~~L~Ls~N~-l~~l---p--~~~~ 337 (454)
T 1jl5_A 276 PQSLTFLDVSENI-FSGLS----ELPPNLYYLNASSN-EIRS--L----CDLPPSLEELNVSNNK-LIEL---P--ALPP 337 (454)
T ss_dssp CTTCCEEECCSSC-CSEES----CCCTTCCEEECCSS-CCSE--E----CCCCTTCCEEECCSSC-CSCC---C--CCCT
T ss_pred cCcCCEEECcCCc-cCccc----CcCCcCCEEECcCC-cCCc--c----cCCcCcCCEEECCCCc-cccc---c--ccCC
Confidence 3556666666655 44311 01245666666665 3332 1 122 356666666653 2221 1 1145
Q ss_pred ccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHH
Q 006015 560 NLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNG 600 (664)
Q Consensus 560 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~ 600 (664)
+|+.|++++|+++. .|. .+++|+.+++++|.+++
T Consensus 338 ~L~~L~L~~N~l~~-lp~------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 338 RLERLIASFNHLAE-VPE------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSCCSC-CCC------CCTTCCEEECCSSCCSS
T ss_pred cCCEEECCCCcccc-ccc------hhhhccEEECCCCCCCc
Confidence 56666666666553 111 23445555566665554
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4.2e-24 Score=216.19 Aligned_cols=306 Identities=15% Similarity=0.121 Sum_probs=147.6
Q ss_pred cCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCc
Q 006015 149 AKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHL 228 (664)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L 228 (664)
+++++.|+++++. ++..+ ..++..+++|++|++++| .+...+...+ ..+++|++|++++|.+++..+..+..+++|
T Consensus 44 l~~l~~l~l~~~~-l~~l~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKLP-AALLDSFRQVELLNLNDL-QIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEESCE-ESEEC-THHHHHCCCCSEEECTTS-CCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecCCc-hhhCC-hhHhcccccCcEEECCCC-cccccChhhc-cCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 4556666666554 33332 222333555555555554 2332222222 244555555555555544444444445555
Q ss_pred ceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEE
Q 006015 229 EDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSI 308 (664)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 308 (664)
++|++++|..... + ...+..+++|+.|+++++ .+....+..+..+++|+.|
T Consensus 120 ~~L~L~~n~l~~l-~---------------------------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 120 TVLVLERNDLSSL-P---------------------------RGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp CEEECCSSCCCCC-C---------------------------TTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEE
T ss_pred CEEECCCCccCcC-C---------------------------HHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEE
Confidence 5555554432211 1 111234445555555544 3333334445666667777
Q ss_pred EecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcC
Q 006015 309 KLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRME 388 (664)
Q Consensus 309 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 388 (664)
++++|.+.... +. .+++|+.|+++++. +... ...++|++|++++|.. .... ....++|+.|+++
T Consensus 171 ~l~~n~l~~~~---~~-~l~~L~~L~l~~n~-l~~~------~~~~~L~~L~l~~n~l-~~~~----~~~~~~L~~L~l~ 234 (390)
T 3o6n_A 171 QLSSNRLTHVD---LS-LIPSLFHANVSYNL-LSTL------AIPIAVEELDASHNSI-NVVR----GPVNVELTILKLQ 234 (390)
T ss_dssp ECCSSCCSBCC---GG-GCTTCSEEECCSSC-CSEE------ECCSSCSEEECCSSCC-CEEE----CCCCSSCCEEECC
T ss_pred ECCCCcCCccc---cc-cccccceeeccccc-cccc------CCCCcceEEECCCCee-eecc----ccccccccEEECC
Confidence 77666654432 22 45667777766654 2211 2334666666666542 2110 0123556666666
Q ss_pred CCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCC
Q 006015 389 SCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVG 468 (664)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 468 (664)
+|..... ..+ ..+++|++|++++|.+.+..+..+..+++|+.|++++| .++... .....+++|++|++++|.
T Consensus 235 ~n~l~~~---~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~--~~~~~l~~L~~L~L~~n~- 306 (390)
T 3o6n_A 235 HNNLTDT---AWL-LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALN--LYGQPIPTLKVLDLSHNH- 306 (390)
T ss_dssp SSCCCCC---GGG-GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEE--CSSSCCTTCCEEECCSSC-
T ss_pred CCCCccc---HHH-cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccC--cccCCCCCCCEEECCCCc-
Confidence 6554321 122 25666666666666666655566666666666666666 555421 111245556666665554
Q ss_pred CChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCC
Q 006015 469 ITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGC 517 (664)
Q Consensus 469 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (664)
++ .++..+..+++|++|++++|. +++.. +..+++|+.|++++|
T Consensus 307 l~--~~~~~~~~l~~L~~L~L~~N~-i~~~~---~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 307 LL--HVERNQPQFDRLENLYLDHNS-IVTLK---LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CC--CCGGGHHHHTTCSEEECCSSC-CCCCC---CCTTCCCSEEECCSS
T ss_pred ce--ecCccccccCcCCEEECCCCc-cceeC---chhhccCCEEEcCCC
Confidence 32 112122334555555555554 43321 334444444444444
No 43
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=5.9e-24 Score=215.15 Aligned_cols=316 Identities=17% Similarity=0.106 Sum_probs=168.7
Q ss_pred CCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCC
Q 006015 175 CKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSL 254 (664)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (664)
+++++.|++.++ .++..+...+ ..+++|+.|+++++.+++..+..+..+++|++|++++|......
T Consensus 44 l~~l~~l~l~~~-~l~~l~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------ 109 (390)
T 3o6n_A 44 LNNQKIVTFKNS-TMRKLPAALL-DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------------ 109 (390)
T ss_dssp GCCCSEEEEESC-EESEECTHHH-HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC------------
T ss_pred cCCceEEEecCC-chhhCChhHh-cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC------------
Confidence 466666666665 4454444433 35666666666666665544445555555555555554432211
Q ss_pred CEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEE
Q 006015 255 KALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELS 334 (664)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (664)
+..+..+++|+.|+++++ .+....+..+..+++|++|++++|.+....+..+. .+++|++|+
T Consensus 110 ----------------~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ 171 (390)
T 3o6n_A 110 ----------------PHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQ 171 (390)
T ss_dssp ----------------TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS-SCTTCCEEE
T ss_pred ----------------HHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc-CCCCCCEEE
Confidence 111233344444444444 33322223356677777777777766554443344 566677777
Q ss_pred cCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEcc
Q 006015 335 LSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLT 414 (664)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (664)
++++. ++... +..+++|+.|++++|.. ... . ..++|++|+++
T Consensus 172 l~~n~-l~~~~----~~~l~~L~~L~l~~n~l-~~~------~--------------------------~~~~L~~L~l~ 213 (390)
T 3o6n_A 172 LSSNR-LTHVD----LSLIPSLFHANVSYNLL-STL------A--------------------------IPIAVEELDAS 213 (390)
T ss_dssp CCSSC-CSBCC----GGGCTTCSEEECCSSCC-SEE------E--------------------------CCSSCSEEECC
T ss_pred CCCCc-CCccc----cccccccceeecccccc-ccc------C--------------------------CCCcceEEECC
Confidence 66654 33221 23455556665555432 110 1 22345555555
Q ss_pred CCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCC
Q 006015 415 DNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKD 494 (664)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 494 (664)
++.+..... ...++|+.|++++| .+++. ..+. .+++|++|++++|. ++. ..+..+..+++|++|++++|.
T Consensus 214 ~n~l~~~~~---~~~~~L~~L~l~~n-~l~~~--~~l~-~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~- 283 (390)
T 3o6n_A 214 HNSINVVRG---PVNVELTILKLQHN-NLTDT--AWLL-NYPGLVEVDLSYNE-LEK-IMYHPFVKMQRLERLYISNNR- 283 (390)
T ss_dssp SSCCCEEEC---CCCSSCCEEECCSS-CCCCC--GGGG-GCTTCSEEECCSSC-CCE-EESGGGTTCSSCCEEECCSSC-
T ss_pred CCeeeeccc---cccccccEEECCCC-CCccc--HHHc-CCCCccEEECCCCc-CCC-cChhHccccccCCEEECCCCc-
Confidence 555444211 12355666666666 55543 2222 55666666666665 432 122334456667777776665
Q ss_pred CCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChh
Q 006015 495 ITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDV 574 (664)
Q Consensus 495 l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 574 (664)
+++. +..+..+++|+.|++++| .++. ++..+..+++|++|++++|+ ++... ...+++|+.|++++|++...
T Consensus 284 l~~~-~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 284 LVAL-NLYGQPIPTLKVLDLSHN-HLLH--VERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCEE-ECSSSCCTTCCEEECCSS-CCCC--CGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSCEEHH
T ss_pred Cccc-CcccCCCCCCCEEECCCC-ccee--cCccccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCCccch
Confidence 5542 222345677777777777 4443 34445567777777777773 33332 23367888888888887776
Q ss_pred HHHHh
Q 006015 575 GLLSL 579 (664)
Q Consensus 575 ~~~~l 579 (664)
....+
T Consensus 355 ~~~~~ 359 (390)
T 3o6n_A 355 SLRAL 359 (390)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 55443
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.8e-23 Score=221.72 Aligned_cols=297 Identities=15% Similarity=0.093 Sum_probs=169.9
Q ss_pred cCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCC
Q 006015 200 KCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGG 279 (664)
Q Consensus 200 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (664)
.+++|+.|++++|.+++..+..++.+++|+.|++++|..... +...++. +++|++|++++|..... .+..+..+++
T Consensus 73 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~-l~~L~~L~L~~n~l~~l--~~~~~~~l~~ 148 (597)
T 3oja_B 73 SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQN-VPLLTVLVLERNDLSSL--PRGIFHNTPK 148 (597)
T ss_dssp HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTT-CTTCCEEECCSSCCCCC--CTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcC-CCCCCEEEeeCCCCCCC--CHHHhccCCC
Confidence 344444444444444433333444444444444444432221 1111222 44455555544432211 1112344555
Q ss_pred CcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEE
Q 006015 280 LQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKL 359 (664)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (664)
|+.|+++++ .+.+..+..+..+++|+.|++++|.+.... +. .+++|+.|+++++. +.. +...++|+.|
T Consensus 149 L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~-~l~~L~~L~l~~n~-l~~------l~~~~~L~~L 216 (597)
T 3oja_B 149 LTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD---LS-LIPSLFHANVSYNL-LST------LAIPIAVEEL 216 (597)
T ss_dssp CCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GG-GCTTCSEEECCSSC-CSE------EECCTTCSEE
T ss_pred CCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcC---hh-hhhhhhhhhcccCc-ccc------ccCCchhhee
Confidence 555555555 444444555667777777777777665432 22 56777777777764 332 1244567777
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccC
Q 006015 360 DITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGI 439 (664)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (664)
++++|.. .... ....++|+.|++++|..... ..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 217 ~ls~n~l-~~~~----~~~~~~L~~L~L~~n~l~~~---~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 217 DASHNSI-NVVR----GPVNVELTILKLQHNNLTDT---AWLL-NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp ECCSSCC-CEEE----CSCCSCCCEEECCSSCCCCC---GGGG-GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred eccCCcc-cccc----cccCCCCCEEECCCCCCCCC---hhhc-cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 7777653 2211 01235788888887765332 2233 778888888888888887777888888888888888
Q ss_pred CCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCC
Q 006015 440 CLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPL 519 (664)
Q Consensus 440 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 519 (664)
| .++.. ......+++|+.|++++|. ++ .++..+..+++|++|++++|. ++... +..+++|+.|++++| .
T Consensus 288 N-~l~~l--~~~~~~l~~L~~L~Ls~N~-l~--~i~~~~~~l~~L~~L~L~~N~-l~~~~---~~~~~~L~~L~l~~N-~ 356 (597)
T 3oja_B 288 N-RLVAL--NLYGQPIPTLKVLDLSHNH-LL--HVERNQPQFDRLENLYLDHNS-IVTLK---LSTHHTLKNLTLSHN-D 356 (597)
T ss_dssp S-CCCEE--ECSSSCCTTCCEEECCSSC-CC--CCGGGHHHHTTCSEEECCSSC-CCCCC---CCTTCCCSEEECCSS-C
T ss_pred C-CCCCC--CcccccCCCCcEEECCCCC-CC--ccCcccccCCCCCEEECCCCC-CCCcC---hhhcCCCCEEEeeCC-C
Confidence 8 77663 1222357888888888876 44 233334556788888888877 65432 556777888888877 3
Q ss_pred CCHHHHHHHHhcC
Q 006015 520 ITSLGLAAIAVGC 532 (664)
Q Consensus 520 l~~~~~~~~~~~~ 532 (664)
+.......++...
T Consensus 357 ~~~~~~~~~~~~~ 369 (597)
T 3oja_B 357 WDCNSLRALFRNV 369 (597)
T ss_dssp EEHHHHHHHTTTC
T ss_pred CCChhHHHHHHHH
Confidence 4444455444433
No 45
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=1.4e-24 Score=226.23 Aligned_cols=285 Identities=18% Similarity=0.128 Sum_probs=143.3
Q ss_pred HHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHH
Q 006015 296 ANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHV 375 (664)
Q Consensus 296 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 375 (664)
+..|..+++|++|++++|.+....+..+. .+++|++|+++++. +.... ...+..+++|++|++++|.. ... .+..
T Consensus 49 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~-~~~~ 123 (477)
T 2id5_A 49 QDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNR-LKLIP-LGVFTGLSNLTKLDISENKI-VIL-LDYM 123 (477)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CCSCC-TTSSTTCTTCCEEECTTSCC-CEE-CTTT
T ss_pred HhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCc-CCccC-cccccCCCCCCEEECCCCcc-ccC-ChhH
Confidence 33444555555555555544443333333 44555555555443 21100 11123455555555555442 111 1112
Q ss_pred HhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCC
Q 006015 376 TSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCC 455 (664)
Q Consensus 376 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 455 (664)
+..+++|++|++++|... ......+. .+++|++|++++|.+.......+..+++|+.|++++| .+.......+. .+
T Consensus 124 ~~~l~~L~~L~l~~n~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~-~l 199 (477)
T 2id5_A 124 FQDLYNLKSLEVGDNDLV-YISHRAFS-GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFK-RL 199 (477)
T ss_dssp TTTCTTCCEEEECCTTCC-EECTTSST-TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC-CCCEECTTCSC-SC
T ss_pred ccccccCCEEECCCCccc-eeChhhcc-CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC-cCcEeChhhcc-cC
Confidence 234555555555554321 11111122 5667777777777666655566666777777777776 66554333333 56
Q ss_pred CCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcC
Q 006015 456 SKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQL 535 (664)
Q Consensus 456 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 535 (664)
++|+.|++++|..+.. ++.......+|++|++++|. ++......+..+++|+.|++++| .++.. .+..+.++++|
T Consensus 200 ~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L 274 (477)
T 2id5_A 200 YRLKVLEISHWPYLDT--MTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYN-PISTI-EGSMLHELLRL 274 (477)
T ss_dssp TTCCEEEEECCTTCCE--ECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSS-CCCEE-CTTSCTTCTTC
T ss_pred cccceeeCCCCccccc--cCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCC-cCCcc-ChhhccccccC
Confidence 6777777776653321 11111123466777777665 66555556666666777777666 34331 22334556666
Q ss_pred cEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHH
Q 006015 536 IKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLN 599 (664)
Q Consensus 536 ~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~ 599 (664)
++|++++| .++..... ....+++|+.|++++|++++..+.. +..+++|+.+++++|.+.
T Consensus 275 ~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 275 QEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGNQLTTLEESV---FHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CEEECCSS-CCSEECTT-TBTTCTTCCEEECCSSCCSCCCGGG---BSCGGGCCEEECCSSCEE
T ss_pred CEEECCCC-ccceECHH-HhcCcccCCEEECCCCcCceeCHhH---cCCCcccCEEEccCCCcc
Confidence 66666666 33322111 1123566666666666666544332 334445556666666654
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.88 E-value=3.2e-24 Score=223.46 Aligned_cols=137 Identities=16% Similarity=0.060 Sum_probs=71.6
Q ss_pred CCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCC
Q 006015 405 CRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDL 484 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (664)
+++|++|+++++...+..+.......+|+.|++++| .++......+. .+++|+.|++++|. ++. .....+..+++|
T Consensus 199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L 274 (477)
T 2id5_A 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVR-HLVYLRFLNLSYNP-IST-IEGSMLHELLRL 274 (477)
T ss_dssp CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHT-TCTTCCEEECCSSC-CCE-ECTTSCTTCTTC
T ss_pred CcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhc-CccccCeeECCCCc-CCc-cChhhccccccC
Confidence 444444444444333333333333345555555555 55543333333 55566666666554 331 111223445666
Q ss_pred CEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccCh
Q 006015 485 EMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNIND 548 (664)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~ 548 (664)
++|++++|. +++..+..+..+++|+.|++++| .++.. .+..+..+++|+.|++++|+...+
T Consensus 275 ~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 275 QEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTL-EESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CEEECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCC-CGGGBSCGGGCCEEECCSSCEECS
T ss_pred CEEECCCCc-cceECHHHhcCcccCCEEECCCC-cCcee-CHhHcCCCcccCEEEccCCCccCc
Confidence 666666665 66555566666677777777776 44431 223445566777777777754433
No 47
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4e-21 Score=190.39 Aligned_cols=241 Identities=20% Similarity=0.310 Sum_probs=177.5
Q ss_pred CCCCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHh-HHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCc
Q 006015 252 KSLKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLS-IANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSL 330 (664)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (664)
++++.|+++++...... ..+..+++|+.|+++++ .+.+. .+..+..+++|++|++++|.+.+..+..+. .+++|
T Consensus 70 ~~l~~L~l~~n~l~~~~---~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPL---AEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNL 144 (336)
T ss_dssp TTCSEEECTTCEECSCC---CSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTC
T ss_pred ccceEEEcCCccccccc---hhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCC
Confidence 56666666655422211 11234567777777776 45544 666777788888888888888877777777 58888
Q ss_pred cEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCC-CCcEEEcCCCC-CCCHHHHHHHHhhCCCC
Q 006015 331 KELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCT-GLTSLRMESCT-LVPREAFVLIGQRCRFL 408 (664)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~~~~L 408 (664)
++|++++|..+++..++..+..+++|++|++++|..+++..+...+..++ +|++|++++|. .+++..+......+++|
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L 224 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 224 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence 88888888657766677778888889999998885577766777777888 99999998886 46666666666689999
Q ss_pred CEEEccCCC-CChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEE
Q 006015 409 EELDLTDNE-IDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMI 487 (664)
Q Consensus 409 ~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 487 (664)
++|++++|. +++..+..+.++++|+.|++++|..+++.++..+. .+++|+.|++++| +++.++..+...++.|
T Consensus 225 ~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~--i~~~~~~~l~~~l~~L--- 298 (336)
T 2ast_B 225 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHL--- 298 (336)
T ss_dssp SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHSTTS---
T ss_pred CEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc--cCHHHHHHHHhhCcce---
Confidence 999999988 77778888888999999999998767776665555 6899999999988 7776777665555554
Q ss_pred eccCCCCCCHHHHHhhh
Q 006015 488 NIAYLKDITDSSLLSLS 504 (664)
Q Consensus 488 ~l~~~~~l~~~~~~~l~ 504 (664)
++++|. +++..+..+.
T Consensus 299 ~l~~n~-l~~~~~~~~~ 314 (336)
T 2ast_B 299 QINCSH-FTTIARPTIG 314 (336)
T ss_dssp EESCCC-SCCTTCSSCS
T ss_pred EEeccc-CccccCCccc
Confidence 467766 7765554444
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3.1e-23 Score=221.47 Aligned_cols=313 Identities=12% Similarity=0.044 Sum_probs=159.5
Q ss_pred cCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCC
Q 006015 200 KCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGG 279 (664)
Q Consensus 200 ~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (664)
.+++++.++++++.++...+..+..+++|+.|++++|..... +...+.. +++|++|++++|..... .+..+..+++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~-l~~L~~L~L~~n~l~~~--~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAY-AHTIQKLYMGFNAIRYL--PPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTT-CTTCCEEECCSSCCCCC--CTTTTTTCTT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcC-CCCCCEEECCCCcCCCC--CHHHHcCCCC
Confidence 456778888887777654445566778888888887664432 2223444 77777777777764332 2233456667
Q ss_pred CcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEE
Q 006015 280 LQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKL 359 (664)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (664)
|+.|+++++ .+....+..|..+++|++|++++|.+....+..+. .+++|++|++++|. ++... +..+++|+.|
T Consensus 125 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~-l~~~~----~~~l~~L~~L 197 (597)
T 3oja_B 125 LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ-ATTSLQNLQLSSNR-LTHVD----LSLIPSLFHA 197 (597)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT-TCTTCCEEECTTSC-CSBCC----GGGCTTCSEE
T ss_pred CCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh-cCCcCcEEECcCCC-CCCcC----hhhhhhhhhh
Confidence 777777766 45443344456666777777776666554444444 55666666666654 33221 2345566666
Q ss_pred ecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccC
Q 006015 360 DITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGI 439 (664)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (664)
++++|.. .. +...++|+.|++++|...... ....++|+.|++++|.+.+ +..+..+++|+.|++++
T Consensus 198 ~l~~n~l-~~------l~~~~~L~~L~ls~n~l~~~~-----~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 198 NVSYNLL-ST------LAIPIAVEELDASHNSINVVR-----GPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 263 (597)
T ss_dssp ECCSSCC-SE------EECCTTCSEEECCSSCCCEEE-----CSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCS
T ss_pred hcccCcc-cc------ccCCchhheeeccCCcccccc-----cccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCC
Confidence 6655542 21 122344555555554331000 0012344455555444443 13344444444444444
Q ss_pred CCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCC
Q 006015 440 CLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPL 519 (664)
Q Consensus 440 ~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 519 (664)
| .++...+.. +..+++|++|++++|. +++. +..+..+++|+.|++++| .
T Consensus 264 N-~l~~~~~~~---------------------------~~~l~~L~~L~Ls~N~-l~~l-~~~~~~l~~L~~L~Ls~N-~ 312 (597)
T 3oja_B 264 N-ELEKIMYHP---------------------------FVKMQRLERLYISNNR-LVAL-NLYGQPIPTLKVLDLSHN-H 312 (597)
T ss_dssp S-CCCEEESGG---------------------------GTTCSSCCEEECTTSC-CCEE-ECSSSCCTTCCEEECCSS-C
T ss_pred C-ccCCCCHHH---------------------------hcCccCCCEEECCCCC-CCCC-CcccccCCCCcEEECCCC-C
Confidence 4 444332222 3344555555555544 4332 122233555555555555 3
Q ss_pred CCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhH
Q 006015 520 ITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVG 575 (664)
Q Consensus 520 l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 575 (664)
++. ++..+..+++|++|++++|+ +.... ...+++|+.|++++|++....
T Consensus 313 l~~--i~~~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 313 LLH--VERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp CCC--CGGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSCEEHHH
T ss_pred CCc--cCcccccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCCCCChh
Confidence 332 33334445555555555553 22221 122455666666666655443
No 49
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.2e-20 Score=190.55 Aligned_cols=165 Identities=18% Similarity=0.245 Sum_probs=84.8
Q ss_pred hCCCCCEEEccCCCCCh----hhHHhhccCCCccEEcccCCCCCChHhHHHHhhC---C---------CCCcEEEcCCCC
Q 006015 404 RCRFLEELDLTDNEIDD----EGLKSISRCSKLSVLKLGICLNITGEGLAHVGMC---C---------SKLKELDLYRCV 467 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~---------~~L~~L~l~~~~ 467 (664)
.+++|++|++++|.+.. ..+..+..+++|+.|++++| .+++.+...+... + ++|++|++++|.
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 45566666666665555 23344455566666666666 5554443333321 1 566666666655
Q ss_pred CCChHHHH---HHHhcCCCCCEEeccCCCCCCHHH----HH-hhhcCCCCCEEEccCCCCCCHH---HHHHHHhcCCcCc
Q 006015 468 GITDSGIL---TIACGCPDLEMINIAYLKDITDSS----LL-SLSKCSRLNTFESRGCPLITSL---GLAAIAVGCKQLI 536 (664)
Q Consensus 468 ~~~~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~----~~-~l~~~~~L~~L~l~~~~~l~~~---~~~~~~~~~~~L~ 536 (664)
+++.+++ ..+..+++|++|++++|. +++.. .. .+..+++|+.|++++| .+++. .++..+..+++|+
T Consensus 171 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 171 -LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp -CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCC
T ss_pred -CCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcC
Confidence 5433333 334455666666666664 55432 11 3445566666666666 34321 2344445556666
Q ss_pred EEeccCccccChhhHHHHHhc-----CcccCeeeeccCCCCh
Q 006015 537 KLDIKWCHNINDVGMLPLAHF-----SQNLRQINLSYTSVTD 573 (664)
Q Consensus 537 ~L~l~~~~~i~~~~~~~~~~~-----~~~L~~L~l~~n~l~~ 573 (664)
+|++++| .+++.+...+... +++|+.|++++|.+++
T Consensus 248 ~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 248 ELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp EEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred EEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 6666666 3444443332221 4556666666666555
No 50
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=4.2e-19 Score=179.09 Aligned_cols=248 Identities=16% Similarity=0.173 Sum_probs=118.0
Q ss_pred HHHhhcCCCccEEEecCCccCHhHHHHHHh---cCCCccEEEcCCCC--CCCch---h---HHHHHhhCCCccEEecCCC
Q 006015 296 ANGLKKLSMLQSIKLDGSVVTRAGLKAIGD---WCVSLKELSLSKCD--GVTDE---G---LSYVATKHRDLRKLDITCC 364 (664)
Q Consensus 296 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~--~~~~~---~---~~~~~~~~~~L~~L~l~~~ 364 (664)
+..+..+++|+.|++++|.+....+..++. .+++|++|++++|. .+.+. + +...+..+++|++|++++|
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 344556666777777777666655544332 35666666666653 11110 1 1112234455555555554
Q ss_pred CCCChH---HHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhcc----C--------
Q 006015 365 RKISDV---SITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISR----C-------- 429 (664)
Q Consensus 365 ~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~----~-------- 429 (664)
.. +.. .++..+..+++|++|++ ++|.+++..+..+.. +
T Consensus 105 ~l-~~~~~~~l~~~l~~~~~L~~L~L--------------------------~~n~l~~~~~~~l~~~l~~l~~~~~~~~ 157 (386)
T 2ca6_A 105 AF-GPTAQEPLIDFLSKHTPLEHLYL--------------------------HNNGLGPQAGAKIARALQELAVNKKAKN 157 (386)
T ss_dssp CC-CTTTHHHHHHHHHHCTTCCEEEC--------------------------CSSCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cC-CHHHHHHHHHHHHhCCCCCEEEC--------------------------cCCCCCHHHHHHHHHHHHHHhhhhhccc
Confidence 42 211 12222333444444444 444443332222222 1
Q ss_pred -CCccEEcccCCCCCChHhHHHH---hhCCCCCcEEEcCCCCCCChHHHHHH----HhcCCCCCEEeccCCCCCCH----
Q 006015 430 -SKLSVLKLGICLNITGEGLAHV---GMCCSKLKELDLYRCVGITDSGILTI----ACGCPDLEMINIAYLKDITD---- 497 (664)
Q Consensus 430 -~~L~~L~l~~~~~l~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~---- 497 (664)
++|+.|++++| .+++.++..+ ...+++|++|++++|. +++.++..+ +..+++|++|++++|. +++
T Consensus 158 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~ 234 (386)
T 2ca6_A 158 APPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSS 234 (386)
T ss_dssp CCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHH
T ss_pred CCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHH
Confidence 45555555555 5543333322 1145555666665554 554443322 2345566666666655 542
Q ss_pred HHHHhhhcCCCCCEEEccCCCCCCHHHH---HHHHhc--CCcCcEEeccCccccChhhHHHHH----hcCcccCeeeecc
Q 006015 498 SSLLSLSKCSRLNTFESRGCPLITSLGL---AAIAVG--CKQLIKLDIKWCHNINDVGMLPLA----HFSQNLRQINLSY 568 (664)
Q Consensus 498 ~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~~~--~~~L~~L~l~~~~~i~~~~~~~~~----~~~~~L~~L~l~~ 568 (664)
..+..+..+++|++|++++| .+++.+. +..+.. +++|++|++++| .++..+...+. ..+++|+.|++++
T Consensus 235 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 235 ALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp HHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 22334455566666666666 4544322 233322 566666666666 34443222211 2256666666666
Q ss_pred CCCChhH
Q 006015 569 TSVTDVG 575 (664)
Q Consensus 569 n~l~~~~ 575 (664)
|++++..
T Consensus 313 N~l~~~~ 319 (386)
T 2ca6_A 313 NRFSEED 319 (386)
T ss_dssp SBSCTTS
T ss_pred CcCCcch
Confidence 6666555
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=6.7e-21 Score=187.92 Aligned_cols=265 Identities=15% Similarity=0.103 Sum_probs=135.0
Q ss_pred CcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCE
Q 006015 177 NLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKA 256 (664)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (664)
+++.++++++ .+...+.. -.++++.|++++|.+++..+..+.++++|++|++++|...... ...+.. +++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~----~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~-l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKD----LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAP-LVKLER 104 (330)
T ss_dssp ETTEEECTTS-CCCSCCCS----CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTT-CTTCCE
T ss_pred CCeEEEecCC-CccccCcc----CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcC-CCCCCE
Confidence 5666766665 33333321 1256677777777666555555666666666666665443321 112333 555555
Q ss_pred EeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcC
Q 006015 257 LDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLS 336 (664)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 336 (664)
|++++|.... .+..+ .++|++|++++|.+.......+. .+++|+.|+++
T Consensus 105 L~Ls~n~l~~----------------------------l~~~~--~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~ 153 (330)
T 1xku_A 105 LYLSKNQLKE----------------------------LPEKM--PKTLQELRVHENEITKVRKSVFN-GLNQMIVVELG 153 (330)
T ss_dssp EECCSSCCSB----------------------------CCSSC--CTTCCEEECCSSCCCBBCHHHHT-TCTTCCEEECC
T ss_pred EECCCCcCCc----------------------------cChhh--cccccEEECCCCcccccCHhHhc-CCccccEEECC
Confidence 5555543211 00001 13555555555555444343343 45555555555
Q ss_pred CCCCCCc-hhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccC
Q 006015 337 KCDGVTD-EGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTD 415 (664)
Q Consensus 337 ~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (664)
++. +.. ......+..+++|+.|++++|.. +. ++.. ..++|++|++++
T Consensus 154 ~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~-----------------------l~~~-------~~~~L~~L~l~~ 201 (330)
T 1xku_A 154 TNP-LKSSGIENGAFQGMKKLSYIRIADTNI-TT-----------------------IPQG-------LPPSLTELHLDG 201 (330)
T ss_dssp SSC-CCGGGBCTTGGGGCTTCCEEECCSSCC-CS-----------------------CCSS-------CCTTCSEEECTT
T ss_pred CCc-CCccCcChhhccCCCCcCEEECCCCcc-cc-----------------------CCcc-------ccccCCEEECCC
Confidence 543 211 01112233444555555544431 10 0000 125677777777
Q ss_pred CCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCC
Q 006015 416 NEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDI 495 (664)
Q Consensus 416 ~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 495 (664)
|.+.+..+..+..+++|+.|++++| .++......+. .+++|++|++++|. ++ .++..+..+++|++|++++|. +
T Consensus 202 n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~-~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~~L~l~~N~-i 275 (330)
T 1xku_A 202 NKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLA-NTPHLRELHLNNNK-LV--KVPGGLADHKYIQVVYLHNNN-I 275 (330)
T ss_dssp SCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGG-GSTTCCEEECCSSC-CS--SCCTTTTTCSSCCEEECCSSC-C
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhcc-CCCCCCEEECCCCc-Cc--cCChhhccCCCcCEEECCCCc-C
Confidence 7776666666777777777777777 66654333333 56677777777665 43 233334556667777777765 5
Q ss_pred CHHHHHhhhc------CCCCCEEEccCC
Q 006015 496 TDSSLLSLSK------CSRLNTFESRGC 517 (664)
Q Consensus 496 ~~~~~~~l~~------~~~L~~L~l~~~ 517 (664)
++.....+.. .+.|+.|++++|
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSN 303 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred CccChhhcCCcccccccccccceEeecC
Confidence 5444433322 244455555555
No 52
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=8.7e-19 Score=174.78 Aligned_cols=260 Identities=13% Similarity=0.186 Sum_probs=175.1
Q ss_pred EEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHH---HHHHHhcCC-CCcEEEcCCCCCCCHHHHHHHH---hh-
Q 006015 333 LSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVS---ITHVTSSCT-GLTSLRMESCTLVPREAFVLIG---QR- 404 (664)
Q Consensus 333 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~---~~- 404 (664)
+.++.+. ++. .++.++...++|++|++++|. +++.. +...+..++ +|++|++++|.. ++.....+. ..
T Consensus 3 ~~ls~n~-~~~-~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~ 78 (362)
T 3goz_A 3 YKLTLHP-GSN-PVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSL-GFKNSDELVQILAAI 78 (362)
T ss_dssp EECCCCT-TCC-HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCG-GGSCHHHHHHHHHTS
T ss_pred ccccccc-chH-HHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCC-CHHHHHHHHHHHhcc
Confidence 3455543 331 455566566669999999887 44432 234556677 899999998754 333333333 12
Q ss_pred CCCCCEEEccCCCCChhhHHhhcc----C-CCccEEcccCCCCCChHhHHHHhh---C-CCCCcEEEcCCCCCCChH---
Q 006015 405 CRFLEELDLTDNEIDDEGLKSISR----C-SKLSVLKLGICLNITGEGLAHVGM---C-CSKLKELDLYRCVGITDS--- 472 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~----~-~~L~~L~l~~~~~l~~~~~~~l~~---~-~~~L~~L~l~~~~~~~~~--- 472 (664)
+++|++|++++|.+++..+..+.. + ++|+.|++++| .+++.+...+.. . .++|++|++++|. +++.
T Consensus 79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~ 156 (362)
T 3goz_A 79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSD 156 (362)
T ss_dssp CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHH
T ss_pred CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHH
Confidence 388999999999888766654443 4 78999999999 888776665543 2 4689999999887 6643
Q ss_pred HHHHHHhcCC-CCCEEeccCCCCCCHHHHHhhh----cC-CCCCEEEccCCCCCCHH---HHHHHHhc-CCcCcEEeccC
Q 006015 473 GILTIACGCP-DLEMINIAYLKDITDSSLLSLS----KC-SRLNTFESRGCPLITSL---GLAAIAVG-CKQLIKLDIKW 542 (664)
Q Consensus 473 ~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~l~----~~-~~L~~L~l~~~~~l~~~---~~~~~~~~-~~~L~~L~l~~ 542 (664)
.+...+..++ +|++|++++|. +++.....+. .+ ++|++|++++| .+++. .++..+.. .++|++|++++
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 3444455555 89999999987 7766654443 45 58999999988 45442 24445545 45899999999
Q ss_pred ccccChhhHHHHH---hcCcccCeeeeccCC---CChhHHHHhh-CCcccccceeeccCCCCHHHH
Q 006015 543 CHNINDVGMLPLA---HFSQNLRQINLSYTS---VTDVGLLSLA-SISCLQNMTILHLKGLSLNGL 601 (664)
Q Consensus 543 ~~~i~~~~~~~~~---~~~~~L~~L~l~~n~---l~~~~~~~l~-~~~~L~~L~~l~l~~n~~~~~ 601 (664)
| .+++.+...+. ..+++|+.|++++|. ++......+. .++.+++|+.+++++|.+...
T Consensus 235 N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 235 N-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp S-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred C-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 8 66776554433 336889999999988 5544444443 477888888888888887543
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.4e-20 Score=185.61 Aligned_cols=181 Identities=15% Similarity=0.123 Sum_probs=113.6
Q ss_pred hCCCCCEEEccCCCCCh--hhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcC
Q 006015 404 RCRFLEELDLTDNEIDD--EGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGC 481 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 481 (664)
.+++|+.|++++|.+.. ..+..+..+++|+.|++++| .++... . ...++|++|++++|. ++.. .+..+..+
T Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~-~---~~~~~L~~L~l~~n~-l~~~-~~~~~~~l 215 (330)
T 1xku_A 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIP-Q---GLPPSLTELHLDGNK-ITKV-DAASLKGL 215 (330)
T ss_dssp TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCC-S---SCCTTCSEEECTTSC-CCEE-CTGGGTTC
T ss_pred CCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCC-c---cccccCCEEECCCCc-CCcc-CHHHhcCC
Confidence 56666666666666643 33455666777777777777 555421 1 123677888887776 5421 12344567
Q ss_pred CCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHh-----
Q 006015 482 PDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAH----- 556 (664)
Q Consensus 482 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~----- 556 (664)
++|++|++++|. +++.....+..+++|++|++++| .++. ++..+..+++|++|++++| .++..+...+..
T Consensus 216 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~--lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~ 290 (330)
T 1xku_A 216 NNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVK--VPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNT 290 (330)
T ss_dssp TTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSS--CCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCT
T ss_pred CCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCcc--CChhhccCCCcCEEECCCC-cCCccChhhcCCccccc
Confidence 888888888887 77666667778888888888888 5553 5556677888888888888 444433222211
Q ss_pred cCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCC
Q 006015 557 FSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLS 597 (664)
Q Consensus 557 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~ 597 (664)
..++|+.|++++|++...... -..+..+.+++.+++++|+
T Consensus 291 ~~~~l~~l~l~~N~~~~~~i~-~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 291 KKASYSGVSLFSNPVQYWEIQ-PSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TSCCCSEEECCSSSSCGGGSC-GGGGTTCCCGGGEEC----
T ss_pred ccccccceEeecCcccccccC-ccccccccceeEEEecccC
Confidence 136788999999987642211 1235666677788888774
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=8e-23 Score=199.24 Aligned_cols=202 Identities=12% Similarity=0.045 Sum_probs=106.4
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCC-
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCP- 482 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~- 482 (664)
.+++|++|++++|.+....+..+.++++|++|++++| .++...+..+. .+++|++|++++|. ++. .++..+..++
T Consensus 99 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~-~l~~L~~L~L~~N~-l~~-~~p~~l~~l~~ 174 (313)
T 1ogq_A 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSIS-SLPNLVGITFDGNR-ISG-AIPDSYGSFSK 174 (313)
T ss_dssp GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGG-GCTTCCEEECCSSC-CEE-ECCGGGGCCCT
T ss_pred cCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCChHHh-cCCCCCeEECcCCc-ccC-cCCHHHhhhhh
Confidence 5556666666666555555555556666666666666 55433233333 45666666666655 321 1222233444
Q ss_pred CCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccC
Q 006015 483 DLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLR 562 (664)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~ 562 (664)
+|++|++++|. +++..+..+..++ |+.|++++| .++.. .+..+..+++|++|++++|+. + +..+....+++|+
T Consensus 175 ~L~~L~L~~N~-l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~l-~--~~~~~~~~l~~L~ 247 (313)
T 1ogq_A 175 LFTSMTISRNR-LTGKIPPTFANLN-LAFVDLSRN-MLEGD-ASVLFGSDKNTQKIHLAKNSL-A--FDLGKVGLSKNLN 247 (313)
T ss_dssp TCCEEECCSSE-EEEECCGGGGGCC-CSEEECCSS-EEEEC-CGGGCCTTSCCSEEECCSSEE-C--CBGGGCCCCTTCC
T ss_pred cCcEEECcCCe-eeccCChHHhCCc-ccEEECcCC-cccCc-CCHHHhcCCCCCEEECCCCce-e--eecCcccccCCCC
Confidence 56666666665 5544445555554 666666666 33221 334445566666666666632 1 1111123356666
Q ss_pred eeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee-hh
Q 006015 563 QINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-AA 619 (664)
Q Consensus 563 ~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~ 619 (664)
+|++++|++++..|..+. .+++|+.+++++|.+++..+....+++|+.++++ |.
T Consensus 248 ~L~Ls~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp EEECCSSCCEECCCGGGG---GCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred EEECcCCcccCcCChHHh---cCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 777776666655554433 3334446666666665332323346666666666 54
No 55
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.78 E-value=7.4e-18 Score=168.03 Aligned_cols=226 Identities=10% Similarity=0.086 Sum_probs=152.6
Q ss_pred HHhhCC-CccEEecCCCCCCChH---HHHHHHhcC-CCCcEEEcCCCCCC--CHHHHHHHHhhC-CCCCEEEccCCCCCh
Q 006015 349 VATKHR-DLRKLDITCCRKISDV---SITHVTSSC-TGLTSLRMESCTLV--PREAFVLIGQRC-RFLEELDLTDNEIDD 420 (664)
Q Consensus 349 ~~~~~~-~L~~L~l~~~~~~~~~---~~~~~~~~~-~~L~~L~l~~~~~~--~~~~~~~~~~~~-~~L~~L~l~~~~~~~ 420 (664)
.+..++ +|++|++++|. +++. .+...+... ++|++|++++|... ....+......+ ++|++|++++|.+++
T Consensus 45 ~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp HHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 334455 56666666554 2222 222222333 77777777776541 122233323355 899999999999988
Q ss_pred hhHHhhcc-----CCCccEEcccCCCCCChHhHHHHhh---CCC-CCcEEEcCCCCCCChH---HHHHHHhcC-CCCCEE
Q 006015 421 EGLKSISR-----CSKLSVLKLGICLNITGEGLAHVGM---CCS-KLKELDLYRCVGITDS---GILTIACGC-PDLEMI 487 (664)
Q Consensus 421 ~~~~~l~~-----~~~L~~L~l~~~~~l~~~~~~~l~~---~~~-~L~~L~l~~~~~~~~~---~~~~~~~~~-~~L~~L 487 (664)
.....+.. .++|++|++++| .+++.+...+.. .++ +|++|++++|. +++. .+...+..+ ++|++|
T Consensus 124 ~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L 201 (362)
T 3goz_A 124 KSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSL 201 (362)
T ss_dssp SCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEE
T ss_pred HHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEE
Confidence 77766543 369999999999 998766554432 444 99999999997 6543 345566667 499999
Q ss_pred eccCCCCCCHHHHH----hhhc-CCCCCEEEccCCCCCCH---HHHHHHHhcCCcCcEEeccCcc--ccChhhHHHHHh-
Q 006015 488 NIAYLKDITDSSLL----SLSK-CSRLNTFESRGCPLITS---LGLAAIAVGCKQLIKLDIKWCH--NINDVGMLPLAH- 556 (664)
Q Consensus 488 ~l~~~~~l~~~~~~----~l~~-~~~L~~L~l~~~~~l~~---~~~~~~~~~~~~L~~L~l~~~~--~i~~~~~~~~~~- 556 (664)
++++|. +++.... .+.. .++|++|++++| .+++ ..+...+..+++|+.|++++|+ .++..+...+..
T Consensus 202 ~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~ 279 (362)
T 3goz_A 202 DLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA 279 (362)
T ss_dssp ECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT
T ss_pred ECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH
Confidence 999998 8874433 3444 569999999999 5655 3345566788999999999994 244444444433
Q ss_pred --cCcccCeeeeccCCCChhHHHHh
Q 006015 557 --FSQNLRQINLSYTSVTDVGLLSL 579 (664)
Q Consensus 557 --~~~~L~~L~l~~n~l~~~~~~~l 579 (664)
.+++|+.|++++|++.+..+..+
T Consensus 280 ~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 280 FPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp STTCCEEEEECTTSCBCCGGGCHHH
T ss_pred hccCCceEEEecCCCcCCCcchHHH
Confidence 36789999999999988754443
No 56
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=7e-21 Score=187.82 Aligned_cols=132 Identities=19% Similarity=0.113 Sum_probs=77.2
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
++|++|++++|.+....+..+..+++|+.|++++| .++......+. .+++|++|++++|. ++ .++..+..+++|+
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~L~~N~-l~--~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLS-FLPTLRELHLDNNK-LS--RVPAGLPDLKLLQ 267 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGG-GCTTCCEEECCSSC-CC--BCCTTGGGCTTCC
T ss_pred CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhh-CCCCCCEEECCCCc-Ce--ecChhhhcCccCC
Confidence 56777777777777666666777777888888777 66654333333 66777777777775 44 2333345667777
Q ss_pred EEeccCCCCCCHHHHHhhhc------CCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCc
Q 006015 486 MINIAYLKDITDSSLLSLSK------CSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~------~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (664)
+|++++|. +++.....+.. .++|+.|++.+|+.......+..+..+++|+.+++++|
T Consensus 268 ~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 268 VVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp EEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred EEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 77777776 66555444433 24566666666642211112233445555555555554
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=6.6e-21 Score=189.78 Aligned_cols=285 Identities=15% Similarity=0.119 Sum_probs=201.2
Q ss_pred cCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhC
Q 006015 326 WCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRC 405 (664)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (664)
.|+.....+.+++. ++ .++. .-.++|++|++++|. ++... ...+..+++|+.|++++|.. .......+. .+
T Consensus 29 ~C~~~~~c~~~~~~-l~--~iP~--~~~~~L~~L~l~~n~-i~~~~-~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~-~l 99 (353)
T 2z80_A 29 SCDRNGICKGSSGS-LN--SIPS--GLTEAVKSLDLSNNR-ITYIS-NSDLQRCVNLQALVLTSNGI-NTIEEDSFS-SL 99 (353)
T ss_dssp EECTTSEEECCSTT-CS--SCCT--TCCTTCCEEECTTSC-CCEEC-TTTTTTCTTCCEEECTTSCC-CEECTTTTT-TC
T ss_pred CCCCCeEeeCCCCC-cc--cccc--cccccCcEEECCCCc-CcccC-HHHhccCCCCCEEECCCCcc-CccCHhhcC-CC
Confidence 34445555555443 22 1221 123589999999987 34321 22346789999999998764 322222233 78
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
++|++|++++|.+.......+.++++|++|++++| .++..........+++|++|++++|..++. .....+..+++|+
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~ 177 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLE 177 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCC
Confidence 99999999999998877777888999999999999 777533212233789999999999854542 2233456789999
Q ss_pred EEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhH--HHHHhcCcccCe
Q 006015 486 MINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGM--LPLAHFSQNLRQ 563 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~--~~~~~~~~~L~~ 563 (664)
+|++++|. +++..+..+..+++|++|++++| .++.. ....+..+++|++|++++| .++.... .+.......++.
T Consensus 178 ~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~ 253 (353)
T 2z80_A 178 ELEIDASD-LQSYEPKSLKSIQNVSHLILHMK-QHILL-LEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKK 253 (353)
T ss_dssp EEEEEETT-CCEECTTTTTTCSEEEEEEEECS-CSTTH-HHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCE
T ss_pred EEECCCCC-cCccCHHHHhccccCCeecCCCC-ccccc-hhhhhhhcccccEEECCCC-ccccccccccccccccchhhc
Confidence 99999998 88777788889999999999999 45553 3445567899999999999 4443321 222234678899
Q ss_pred eeeccCCCChhHHHHhh-CCcccccceeeccCCCCHHHHHHHHH-hCCcccceeee-hhhcccCC
Q 006015 564 INLSYTSVTDVGLLSLA-SISCLQNMTILHLKGLSLNGLAAALL-ACGGITKVKLQ-AAFKQLLP 625 (664)
Q Consensus 564 L~l~~n~l~~~~~~~l~-~~~~L~~L~~l~l~~n~~~~~~~~~~-~~~~L~~l~l~-n~~~~~~p 625 (664)
++++++.+++.....+. .+..+++|+.+++++|.++.+|..++ ++++|+.|+++ |.+.+..|
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 99999998886443322 14456667789999999999888865 49999999999 88887665
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=3.7e-20 Score=181.02 Aligned_cols=217 Identities=14% Similarity=0.130 Sum_probs=104.9
Q ss_pred hcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcC
Q 006015 300 KKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSC 379 (664)
Q Consensus 300 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (664)
..+++|+.|++++|.+....+..+. .+++|++|++++|. +.... . +..+++|++|++++|. ++.. ...
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l------~~~ 98 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNY-VQEL------LVG 98 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSSE-EEEE------EEC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCCc-cccc------cCC
Confidence 3344555555555555444444444 45555555555543 21111 0 3445555555555554 1211 123
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCc
Q 006015 380 TGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLK 459 (664)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 459 (664)
++|+.|++++|... ... ...+++|++|++++|.+....+..+..+++|+.|++++| .++......+...+++|+
T Consensus 99 ~~L~~L~l~~n~l~-~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~ 172 (317)
T 3o53_A 99 PSIETLHAANNNIS-RVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLE 172 (317)
T ss_dssp TTCCEEECCSSCCS-EEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCC
T ss_pred CCcCEEECCCCccC-CcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCC
Confidence 55555555554431 110 113456666666666666655556666666667776666 666544444443556666
Q ss_pred EEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEe
Q 006015 460 ELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLD 539 (664)
Q Consensus 460 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 539 (664)
+|++++|. ++.. .. ...+++|++|++++|. +++.... +..+++|+.|++++| .++. ++..+..+++|+.|+
T Consensus 173 ~L~L~~N~-l~~~--~~-~~~l~~L~~L~Ls~N~-l~~l~~~-~~~l~~L~~L~L~~N-~l~~--l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 173 HLNLQYNF-IYDV--KG-QVVFAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFD 243 (317)
T ss_dssp EEECTTSC-CCEE--EC-CCCCTTCCEEECCSSC-CCEECGG-GGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEE
T ss_pred EEECCCCc-Cccc--cc-ccccccCCEEECCCCc-CCcchhh-hcccCcccEEECcCC-cccc--hhhHhhcCCCCCEEE
Confidence 66666665 3321 10 1124555555555554 4433222 444555555555555 3332 222333344444444
Q ss_pred ccCc
Q 006015 540 IKWC 543 (664)
Q Consensus 540 l~~~ 543 (664)
+++|
T Consensus 244 l~~N 247 (317)
T 3o53_A 244 LRGN 247 (317)
T ss_dssp CTTC
T ss_pred ccCC
Confidence 4444
No 59
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=6.5e-21 Score=188.06 Aligned_cols=295 Identities=12% Similarity=0.103 Sum_probs=166.5
Q ss_pred CccceEecCCCCCCChHHHHHHHhhCCCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCc
Q 006015 99 FTLQSIDLSRSWGFSSSGLLSLTLSCKNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNL 178 (664)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 178 (664)
.+++.++++++.....+. . ..++|+.|++++| .+....+..+..+++|++|++++|. ++... +..+..+++|
T Consensus 33 c~l~~l~~~~~~l~~ip~-~----~~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L 104 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPK-E----ISPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK-ISKIH-EKAFSPLRKL 104 (332)
T ss_dssp EETTEEECCSSCCSSCCS-C----CCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEEC-GGGSTTCTTC
T ss_pred ccCCEEECCCCCccccCC-C----CCCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc-cCccC-HhHhhCcCCC
Confidence 356667766664322111 0 2357777777776 4555444566777777777777776 44332 2223447777
Q ss_pred ceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCH-HHHHHHHHcCCCCCEE
Q 006015 179 KLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDD-CSLAALKHRCKSLKAL 257 (664)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~~~~~L~~L 257 (664)
++|++++| .+...+... .++|++|++++|.++...+..+..+++|+.|++++|..... .....+.. + +|++|
T Consensus 105 ~~L~L~~n-~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-l-~L~~L 177 (332)
T 2ft3_A 105 QKLYISKN-HLVEIPPNL----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG-L-KLNYL 177 (332)
T ss_dssp CEEECCSS-CCCSCCSSC----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS-C-CCSCC
T ss_pred CEEECCCC-cCCccCccc----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccC-C-ccCEE
Confidence 77777777 344433322 26788888888877765555677788888888887665321 11112222 3 77777
Q ss_pred eccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCC
Q 006015 258 DMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSK 337 (664)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (664)
++++|..... +.. ..++|+.|+++++ .+....+..+..+++|+.|++++|.+....+..+. .+++|++|++++
T Consensus 178 ~l~~n~l~~l---~~~--~~~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~ 250 (332)
T 2ft3_A 178 RISEAKLTGI---PKD--LPETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDN 250 (332)
T ss_dssp BCCSSBCSSC---CSS--SCSSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCS
T ss_pred ECcCCCCCcc---Ccc--ccCCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCC
Confidence 7777664321 111 1256777777766 55544455666667777777777766554433444 566666666666
Q ss_pred CCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCC
Q 006015 338 CDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNE 417 (664)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 417 (664)
|. +. .++..+..+++|+.|++++|.. +......+. ... .....+.|+.|++++|.
T Consensus 251 N~-l~--~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~------------~~~---------~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 251 NK-LS--RVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFC------------PVG---------FGVKRAYYNGISLFNNP 305 (332)
T ss_dssp SC-CC--BCCTTGGGCTTCCEEECCSSCC-CBCCTTSSS------------CSS---------CCSSSCCBSEEECCSSS
T ss_pred Cc-Ce--ecChhhhcCccCCEEECCCCCC-CccChhHcc------------ccc---------cccccccccceEeecCc
Confidence 54 32 2333344555566666655542 211000000 000 00024667888888887
Q ss_pred CC--hhhHHhhccCCCccEEcccCC
Q 006015 418 ID--DEGLKSISRCSKLSVLKLGIC 440 (664)
Q Consensus 418 ~~--~~~~~~l~~~~~L~~L~l~~~ 440 (664)
+. ...+.++..+++|+.+++++|
T Consensus 306 ~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 306 VPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SCGGGSCGGGGTTBCCSTTEEC---
T ss_pred ccccccCcccccccchhhhhhcccc
Confidence 76 445567777888888888877
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.8e-19 Score=179.34 Aligned_cols=140 Identities=17% Similarity=0.108 Sum_probs=67.7
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+++|++|++++|.+....+..+..+++|+.|++++| .++... ..+...+++|+.|++++|. ++
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~-~~~~~~~~~L~~L~L~~n~-l~------------- 235 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLL-EIFVDVTSSVECLELRDTD-LD------------- 235 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-CSTTHH-HHHHHHTTTEEEEEEESCB-CT-------------
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC-ccccch-hhhhhhcccccEEECCCCc-cc-------------
Confidence 4556666666666665555555556666666666666 554432 2222245566666666554 32
Q ss_pred CCEEeccCCCCCCHHHHHh---hhcCCCCCEEEccCCCCCCHHH---HHHHHhcCCcCcEEeccCccccChhhHHHHHhc
Q 006015 484 LEMINIAYLKDITDSSLLS---LSKCSRLNTFESRGCPLITSLG---LAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHF 557 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~---l~~~~~L~~L~l~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~ 557 (664)
+..... ....+.++.++++++ .+++.. ++..+.++++|++|++++| .++.... .....
T Consensus 236 -------------~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~-~~~~~ 299 (353)
T 2z80_A 236 -------------TFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-GIFDR 299 (353)
T ss_dssp -------------TCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCT-TTTTT
T ss_pred -------------cccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEECCCC-CCCccCH-HHHhc
Confidence 211111 112344555555555 343322 3344555666666666666 2331110 01123
Q ss_pred CcccCeeeeccCCCChhH
Q 006015 558 SQNLRQINLSYTSVTDVG 575 (664)
Q Consensus 558 ~~~L~~L~l~~n~l~~~~ 575 (664)
+++|++|++++|+++...
T Consensus 300 l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 300 LTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CTTCCEEECCSSCBCCCH
T ss_pred CCCCCEEEeeCCCccCcC
Confidence 566666666666655543
No 61
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=3.2e-21 Score=187.93 Aligned_cols=61 Identities=15% Similarity=0.028 Sum_probs=29.1
Q ss_pred CCcceEeccccCCcC--hhHHHHHHHcCCcCcEEeccC-CCCCCchhhhhccCCCcceEeccCCCC
Q 006015 176 KNLKLISLKWCLGVG--DLGVGLIAVKCKEIRSLDLSY-LPITNKCLPSILKLQHLEDLILEGCFG 238 (664)
Q Consensus 176 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~ 238 (664)
.+++.|+++++...+ ..+..+ ..+++|++|++++ +.+.+..|..++++++|++|++++|..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l--~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 113 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC
T ss_pred ceEEEEECCCCCccCCcccChhH--hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee
Confidence 345555555553322 222221 3455555555553 455545555555555555555555443
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.8e-20 Score=193.20 Aligned_cols=232 Identities=17% Similarity=0.090 Sum_probs=179.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCC
Q 006015 379 CTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKL 458 (664)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 458 (664)
.++++.|++++|.. .......+. .+++|++|++++|.+....+..+.++++|+.|++++| .++......+. .+++|
T Consensus 74 ~~~l~~L~L~~n~i-~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L 149 (452)
T 3zyi_A 74 PSNTRYLNLMENNI-QMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFE-YLSKL 149 (452)
T ss_dssp CTTCSEEECCSSCC-CEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSS-SCTTC
T ss_pred CCCccEEECcCCcC-ceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhc-ccCCC
Confidence 36899999999765 322223333 8899999999999999888888999999999999999 88865433344 78999
Q ss_pred cEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEE
Q 006015 459 KELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKL 538 (664)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (664)
++|++++|. ++. .....+..+++|++|++++|..++......+..+++|+.|++++| .++. ++ .+..+++|++|
T Consensus 150 ~~L~L~~N~-l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~-~~~~l~~L~~L 223 (452)
T 3zyi_A 150 RELWLRNNP-IES-IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKD--MP-NLTPLVGLEEL 223 (452)
T ss_dssp CEEECCSCC-CCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSS--CC-CCTTCTTCCEE
T ss_pred CEEECCCCC-cce-eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccc--cc-cccccccccEE
Confidence 999999997 552 223345678999999999987788777777889999999999999 5554 33 35678899999
Q ss_pred eccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCcccceeee
Q 006015 539 DIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGITKVKLQ 617 (664)
Q Consensus 539 ~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~ 617 (664)
++++|+ ++..... ....+++|+.|++++|++++..+.. +..+++|+.+++++|.++.+++..+. +++|+.|+|+
T Consensus 224 ~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 298 (452)
T 3zyi_A 224 EMSGNH-FPEIRPG-SFHGLSSLKKLWVMNSQVSLIERNA---FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLH 298 (452)
T ss_dssp ECTTSC-CSEECGG-GGTTCTTCCEEECTTSCCCEECTTT---TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECC
T ss_pred ECcCCc-CcccCcc-cccCccCCCEEEeCCCcCceECHHH---hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEcc
Confidence 999994 4433221 2234799999999999998876554 45566777999999999998877765 9999999999
Q ss_pred -hhhcccCC
Q 006015 618 -AAFKQLLP 625 (664)
Q Consensus 618 -n~~~~~~p 625 (664)
|++...-.
T Consensus 299 ~Np~~CdC~ 307 (452)
T 3zyi_A 299 HNPWNCDCD 307 (452)
T ss_dssp SSCEECSTT
T ss_pred CCCcCCCCC
Confidence 87764443
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=2.2e-20 Score=191.78 Aligned_cols=231 Identities=17% Similarity=0.116 Sum_probs=177.7
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCC
Q 006015 379 CTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKL 458 (664)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 458 (664)
.++++.|++++|.. .......+. .+++|++|++++|.+....+..+.++++|+.|++++| .++......+. .+++|
T Consensus 63 ~~~l~~L~L~~n~i-~~~~~~~~~-~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L 138 (440)
T 3zyj_A 63 STNTRLLNLHENQI-QIIKVNSFK-HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFV-YLSKL 138 (440)
T ss_dssp CTTCSEEECCSCCC-CEECTTTTS-SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSC-SCSSC
T ss_pred CCCCcEEEccCCcC-CeeCHHHhh-CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhh-ccccC
Confidence 46899999998765 222222333 7899999999999999888888999999999999999 88865433344 78999
Q ss_pred cEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEE
Q 006015 459 KELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKL 538 (664)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (664)
++|++++|. ++. .....+..+++|++|++++|..++......+..+++|+.|++++| .++. ++ .+..+++|++|
T Consensus 139 ~~L~L~~N~-i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~-~~~~l~~L~~L 212 (440)
T 3zyj_A 139 KELWLRNNP-IES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLRE--IP-NLTPLIKLDEL 212 (440)
T ss_dssp CEEECCSCC-CCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSS--CC-CCTTCSSCCEE
T ss_pred ceeeCCCCc-ccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcc--cc-ccCCCcccCEE
Confidence 999999987 542 222345678999999999987687777777888999999999999 5654 33 35678899999
Q ss_pred eccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCcccceeee
Q 006015 539 DIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGITKVKLQ 617 (664)
Q Consensus 539 ~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~ 617 (664)
++++| .++..... ....+++|+.|++++|++++..+.. +..+++|+.+++++|.++.+++..+. +++|+.|+|+
T Consensus 213 ~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 287 (440)
T 3zyj_A 213 DLSGN-HLSAIRPG-SFQGLMHLQKLWMIQSQIQVIERNA---FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287 (440)
T ss_dssp ECTTS-CCCEECTT-TTTTCTTCCEEECTTCCCCEECTTS---STTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECC
T ss_pred ECCCC-ccCccChh-hhccCccCCEEECCCCceeEEChhh---hcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcC
Confidence 99999 44443221 2234789999999999998876544 55566777899999999998887766 8999999999
Q ss_pred -hhhcccC
Q 006015 618 -AAFKQLL 624 (664)
Q Consensus 618 -n~~~~~~ 624 (664)
|++...-
T Consensus 288 ~Np~~CdC 295 (440)
T 3zyj_A 288 HNPWNCNC 295 (440)
T ss_dssp SSCEECSS
T ss_pred CCCccCCC
Confidence 8776443
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=1.7e-20 Score=182.95 Aligned_cols=168 Identities=14% Similarity=0.049 Sum_probs=87.2
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+++|++|++++|.+....+..+..+++|+.|++++| .+++.........+++|++|++++|. ++. ..+..+..+++
T Consensus 124 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~ 200 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQ-LSPTAFNSLSS 200 (306)
T ss_dssp TCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCE-ECTTTTTTCTT
T ss_pred hccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCC-cCC-cCHHHhcCCCC
Confidence 5566666666666665555555666666666666666 55442111222255666666666665 432 11223345566
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCC-cCcEEeccCccccChhhHHHHHhcCcccC
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCK-QLIKLDIKWCHNINDVGMLPLAHFSQNLR 562 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~~~~i~~~~~~~~~~~~~~L~ 562 (664)
|++|++++|. +++.....+..+++|+.|++++| .++.. .+..+..++ +|++|++++|+...+.....+...+...+
T Consensus 201 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~ 277 (306)
T 2z66_A 201 LQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLN-HIMTS-KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 277 (306)
T ss_dssp CCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTS-CCCBC-SSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTG
T ss_pred CCEEECCCCc-cCccChhhccCcccCCEeECCCC-CCccc-CHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhh
Confidence 6666666665 55554445566666666766666 33331 222333443 66666666665433333333333333444
Q ss_pred eeeeccCCCChhHHH
Q 006015 563 QINLSYTSVTDVGLL 577 (664)
Q Consensus 563 ~L~l~~n~l~~~~~~ 577 (664)
.+.+..+.+....|.
T Consensus 278 ~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 278 QLLVEVERMECATPS 292 (306)
T ss_dssp GGBSCGGGCBEEESG
T ss_pred hhhccccccccCCch
Confidence 444444444443333
No 65
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=6.9e-21 Score=185.72 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=168.9
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhh--HHhhccCCCccEEcccCCCCCChHhHHHHhhCCC
Q 006015 379 CTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEG--LKSISRCSKLSVLKLGICLNITGEGLAHVGMCCS 456 (664)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 456 (664)
.++|+.|++++|... . ........+++|++|++++|.+.... +..+..+++|+.|++++| .++... ..+ ..++
T Consensus 27 ~~~l~~L~L~~n~l~-~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~-~~~-~~l~ 101 (306)
T 2z66_A 27 PSSATRLELESNKLQ-S-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMS-SNF-LGLE 101 (306)
T ss_dssp CTTCCEEECCSSCCC-C-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEE-EEE-ETCT
T ss_pred CCCCCEEECCCCccC-c-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccCh-hhc-CCCC
Confidence 468999999987652 1 11222237899999999999887543 456667899999999999 776421 223 3689
Q ss_pred CCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCc
Q 006015 457 KLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLI 536 (664)
Q Consensus 457 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 536 (664)
+|++|++++|. ++.......+..+++|++|++++|. ++......+..+++|++|++++| .++...++..+..+++|+
T Consensus 102 ~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 102 QLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCC
T ss_pred CCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCC
Confidence 99999999987 4422222345678999999999997 77777777888999999999999 443322455667889999
Q ss_pred EEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHH-hC-Ccccce
Q 006015 537 KLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALL-AC-GGITKV 614 (664)
Q Consensus 537 ~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~-~~-~~L~~l 614 (664)
+|++++| .++..... ....+++|+.|++++|++++..+.. +..+++|+.+++++|.+++.++..+ .+ ++|+.|
T Consensus 179 ~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L 253 (306)
T 2z66_A 179 FLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFP---YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253 (306)
T ss_dssp EEECTTS-CCCEECTT-TTTTCTTCCEEECTTSCCSBCCSGG---GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred EEECCCC-CcCCcCHH-HhcCCCCCCEEECCCCccCccChhh---ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence 9999999 44433211 2234789999999999988755434 4556677789999999887655443 46 489999
Q ss_pred eee-hhhcccCC
Q 006015 615 KLQ-AAFKQLLP 625 (664)
Q Consensus 615 ~l~-n~~~~~~p 625 (664)
+++ |.+.+..+
T Consensus 254 ~L~~N~~~~~c~ 265 (306)
T 2z66_A 254 NLTQNDFACTCE 265 (306)
T ss_dssp ECTTCCEECSGG
T ss_pred EccCCCeecccC
Confidence 999 88875544
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=2.2e-19 Score=175.47 Aligned_cols=265 Identities=15% Similarity=0.111 Sum_probs=132.3
Q ss_pred ccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcE
Q 006015 305 LQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTS 384 (664)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (664)
++..+++.+.+.. .+..+...+++|++|+++++. +.. ..+..+..+++|++|++++|....... +..+++|++
T Consensus 12 l~i~~ls~~~l~~-~~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~ 84 (317)
T 3o53_A 12 YKIEKVTDSSLKQ-ALASLRQSAWNVKELDLSGNP-LSQ-ISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRT 84 (317)
T ss_dssp EEEESCCTTTHHH-HHHHHHTTGGGCSEEECTTSC-CCC-CCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCE
T ss_pred eeEeeccccchhh-hHHHHhccCCCCCEEECcCCc-cCc-CCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCE
Confidence 4444455554422 233333356677777777765 332 123345666777777777665321110 334555555
Q ss_pred EEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcC
Q 006015 385 LRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLY 464 (664)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~ 464 (664)
|++++| .+.+ +...++|+.|++++| .++.... ..+++|++|+++
T Consensus 85 L~Ls~n--------------------------~l~~-----l~~~~~L~~L~l~~n-~l~~~~~----~~~~~L~~L~l~ 128 (317)
T 3o53_A 85 LDLNNN--------------------------YVQE-----LLVGPSIETLHAANN-NISRVSC----SRGQGKKNIYLA 128 (317)
T ss_dssp EECCSS--------------------------EEEE-----EEECTTCCEEECCSS-CCSEEEE----CCCSSCEEEECC
T ss_pred EECcCC--------------------------cccc-----ccCCCCcCEEECCCC-ccCCcCc----cccCCCCEEECC
Confidence 555554 3322 112244445555444 4443221 124455555555
Q ss_pred CCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhh-cCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCc
Q 006015 465 RCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLS-KCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (664)
+|. ++. .....+..+++|++|++++|. +++..+..+. .+++|++|++++| .++.. +. ...+++|++|++++|
T Consensus 129 ~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~-~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 129 NNK-ITM-LRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDV--KG-QVVFAKLKTLDLSSN 201 (317)
T ss_dssp SSC-CCS-GGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTS-CCCEE--EC-CCCCTTCCEEECCSS
T ss_pred CCC-CCC-ccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCC-cCccc--cc-ccccccCCEEECCCC
Confidence 554 321 111122334555555555554 5544444442 4556666666665 33331 11 113566666666666
Q ss_pred cccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHH--HHHHHHHhCCcccceeee--hh
Q 006015 544 HNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLN--GLAAALLACGGITKVKLQ--AA 619 (664)
Q Consensus 544 ~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~--n~ 619 (664)
.++... +....+++|+.|++++|+++. .|.. +..+++|+.+++++|.+. .++..+..+++|+.++++ +.
T Consensus 202 -~l~~l~--~~~~~l~~L~~L~L~~N~l~~-l~~~---~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~ 274 (317)
T 3o53_A 202 -KLAFMG--PEFQSAAGVTWISLRNNKLVL-IEKA---LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274 (317)
T ss_dssp -CCCEEC--GGGGGGTTCSEEECTTSCCCE-ECTT---CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -cCCcch--hhhcccCcccEEECcCCcccc-hhhH---hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchh
Confidence 333221 112335777777777777764 3322 444556667777777776 344444447777777777 45
Q ss_pred hcccCCh
Q 006015 620 FKQLLPQ 626 (664)
Q Consensus 620 ~~~~~p~ 626 (664)
+.+..|.
T Consensus 275 l~~~~~~ 281 (317)
T 3o53_A 275 LTGQNEE 281 (317)
T ss_dssp HHSSSSC
T ss_pred ccCCchh
Confidence 5544443
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=4.5e-20 Score=179.92 Aligned_cols=209 Identities=14% Similarity=0.122 Sum_probs=122.0
Q ss_pred hCCCccEEecCCCCCCChHHHHHH-HhcCCCCcEEEcCCCCCCCH-HHHHHHHh-hCCCCCEEEccCCCCChhhHHhhcc
Q 006015 352 KHRDLRKLDITCCRKISDVSITHV-TSSCTGLTSLRMESCTLVPR-EAFVLIGQ-RCRFLEELDLTDNEIDDEGLKSISR 428 (664)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~ 428 (664)
.+++|++|++++|...... ...+ ...+++|++|++++|..... ..+..+.. ..++|++|++++|.+....+..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTA-PPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCC-CCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchh-HHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4667777777766532111 1111 24567777777777654221 11111110 1278888888888888877778888
Q ss_pred CCCccEEcccCCCCCChHh--HHHH-hhCCCCCcEEEcCCCCCCCh--HHHHHHHhcCCCCCEEeccCCCCCCHHH-HHh
Q 006015 429 CSKLSVLKLGICLNITGEG--LAHV-GMCCSKLKELDLYRCVGITD--SGILTIACGCPDLEMINIAYLKDITDSS-LLS 502 (664)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~--~~~l-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~ 502 (664)
+++|+.|++++| .+.... +..+ ...+++|++|++++|. ++. .....++..+++|++|++++|. +++.. ...
T Consensus 172 l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 248 (312)
T 1wwl_A 172 FPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPS 248 (312)
T ss_dssp CSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSC
T ss_pred CCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhh
Confidence 888888888888 665431 2222 1467888888888887 552 2233455677888888888887 66544 233
Q ss_pred hhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCCh
Q 006015 503 LSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTD 573 (664)
Q Consensus 503 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 573 (664)
+..+++|++|++++| .++. ++..+. ++|++|++++| .++.. +....+++|++|++++|++++
T Consensus 249 ~~~l~~L~~L~Ls~N-~l~~--ip~~~~--~~L~~L~Ls~N-~l~~~---p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFT-GLKQ--VPKGLP--AKLSVLDLSYN-RLDRN---PSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCTTCCEEECTTS-CCSS--CCSSCC--SEEEEEECCSS-CCCSC---CCTTTSCEEEEEECTTCTTTC
T ss_pred hhhcCCCCEEECCCC-ccCh--hhhhcc--CCceEEECCCC-CCCCC---hhHhhCCCCCEEeccCCCCCC
Confidence 445667777777777 4442 322221 45566666655 23322 112234555555555555543
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=3.5e-19 Score=171.51 Aligned_cols=210 Identities=16% Similarity=0.084 Sum_probs=131.4
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
+++++|+++++.+....+..+..+++|+.|++++| .++......+. .+++|++|++++|..++. ..+..+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~-~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFT-GLALLEQLDLSDNAQLRS-VDPATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSCTTCCC-CCTTTTTTCTTCC
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcC-CccCCCEEeCCCCCCccc-cCHHHhcCCcCCC
Confidence 46666666666666655555666666777777666 66554333333 566677777766653331 1123344567777
Q ss_pred EEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeee
Q 006015 486 MINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQIN 565 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~ 565 (664)
+|++++|. +++..+..+..+++|++|++++| .++.. .+..+..+++|++|++++| .++..... ....+++|+.|+
T Consensus 109 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~ 183 (285)
T 1ozn_A 109 TLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQAL-PDDTFRDLGNLTHLFLHGN-RISSVPER-AFRGLHSLDRLL 183 (285)
T ss_dssp EEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEE
T ss_pred EEECCCCc-CCEECHhHhhCCcCCCEEECCCC-ccccc-CHhHhccCCCccEEECCCC-cccccCHH-HhcCccccCEEE
Confidence 77777776 66555566667777777777777 34331 2233556777788888777 33332211 122367888888
Q ss_pred eccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCcccceeee-hhhcccCCh
Q 006015 566 LSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGITKVKLQ-AAFKQLLPQ 626 (664)
Q Consensus 566 l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~-n~~~~~~p~ 626 (664)
+++|.+++..+..+ ..+++|+.+++++|.++.+++..+. +++|+.|+++ |.+....+.
T Consensus 184 l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 184 LHQNRVAHVHPHAF---RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp CCSSCCCEECTTTT---TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCcccccCHhHc---cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 88888877655444 4455666778888888887766444 8888888888 777755443
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=1.5e-19 Score=185.57 Aligned_cols=229 Identities=18% Similarity=0.131 Sum_probs=173.6
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCcc
Q 006015 354 RDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLS 433 (664)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (664)
++++.|++++|. +.... ...+.++++|+.|++++|.. .......+. .+++|++|++++|.+.......+..+++|+
T Consensus 64 ~~l~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~i-~~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIK-VNSFKHLRHLEILQLSRNHI-RTIEIGAFN-GLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCC-CCEEC-TTTTSSCSSCCEEECCSSCC-CEECGGGGT-TCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCCcEEEccCCc-CCeeC-HHHhhCCCCCCEEECCCCcC-CccChhhcc-CCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 689999999987 34322 23356799999999999764 322222333 789999999999999987777889999999
Q ss_pred EEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEE
Q 006015 434 VLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFE 513 (664)
Q Consensus 434 ~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~ 513 (664)
.|++++| .++......+. .+++|++|++++|..++. .....+.++++|++|++++|. ++.. ..+..+++|+.|+
T Consensus 140 ~L~L~~N-~i~~~~~~~~~-~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~-l~~~--~~~~~l~~L~~L~ 213 (440)
T 3zyj_A 140 ELWLRNN-PIESIPSYAFN-RIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCN-LREI--PNLTPLIKLDELD 213 (440)
T ss_dssp EEECCSC-CCCEECTTTTT-TCTTCCEEECCCCTTCCE-ECTTTTTTCSSCCEEECTTSC-CSSC--CCCTTCSSCCEEE
T ss_pred eeeCCCC-cccccCHHHhh-hCcccCEeCCCCCCCcce-eCcchhhcccccCeecCCCCc-Cccc--cccCCCcccCEEE
Confidence 9999999 88865444444 789999999999776652 122345678999999999997 7743 3577899999999
Q ss_pred ccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeecc
Q 006015 514 SRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHL 593 (664)
Q Consensus 514 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l 593 (664)
+++| .++.. .+..+.++++|++|++++| .++...... ...+++|+.|+|++|+++...+.. +..+++|+.+++
T Consensus 214 Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L 286 (440)
T 3zyj_A 214 LSGN-HLSAI-RPGSFQGLMHLQKLWMIQS-QIQVIERNA-FDNLQSLVEINLAHNNLTLLPHDL---FTPLHHLERIHL 286 (440)
T ss_dssp CTTS-CCCEE-CTTTTTTCTTCCEEECTTC-CCCEECTTS-STTCTTCCEEECTTSCCCCCCTTT---TSSCTTCCEEEC
T ss_pred CCCC-ccCcc-ChhhhccCccCCEEECCCC-ceeEEChhh-hcCCCCCCEEECCCCCCCccChhH---hccccCCCEEEc
Confidence 9999 56552 3567788999999999999 454433221 234799999999999998765444 455667778888
Q ss_pred CCCCHH
Q 006015 594 KGLSLN 599 (664)
Q Consensus 594 ~~n~~~ 599 (664)
++|.+.
T Consensus 287 ~~Np~~ 292 (440)
T 3zyj_A 287 HHNPWN 292 (440)
T ss_dssp CSSCEE
T ss_pred CCCCcc
Confidence 888764
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=1.8e-19 Score=185.79 Aligned_cols=229 Identities=18% Similarity=0.101 Sum_probs=173.2
Q ss_pred CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCcc
Q 006015 354 RDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLS 433 (664)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (664)
++++.|++++|. +.... +..+.++++|+.|++++|.. .......+. .+++|++|++++|.+.......+..+++|+
T Consensus 75 ~~l~~L~L~~n~-i~~~~-~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQ-ADTFRHLHHLEVLQLGRNSI-RQIEVGAFN-GLASLNTLELFDNWLTVIPSGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSSCC-CEECTTTTT-TCTTCCEEECCSSCCSBCCTTTSSSCTTCC
T ss_pred CCccEEECcCCc-CceEC-HHHcCCCCCCCEEECCCCcc-CCcChhhcc-CcccCCEEECCCCcCCccChhhhcccCCCC
Confidence 689999999987 34321 23356799999999999764 322222333 789999999999999987777888999999
Q ss_pred EEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEE
Q 006015 434 VLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFE 513 (664)
Q Consensus 434 ~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~ 513 (664)
.|++++| .++......+. .+++|++|++++|..++.. ....+.++++|++|++++|. +++. ..+..+++|+.|+
T Consensus 151 ~L~L~~N-~l~~~~~~~~~-~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~L~~L~L~~n~-l~~~--~~~~~l~~L~~L~ 224 (452)
T 3zyi_A 151 ELWLRNN-PIESIPSYAFN-RVPSLMRLDLGELKKLEYI-SEGAFEGLFNLKYLNLGMCN-IKDM--PNLTPLVGLEELE 224 (452)
T ss_dssp EEECCSC-CCCEECTTTTT-TCTTCCEEECCCCTTCCEE-CTTTTTTCTTCCEEECTTSC-CSSC--CCCTTCTTCCEEE
T ss_pred EEECCCC-CcceeCHhHHh-cCCcccEEeCCCCCCcccc-ChhhccCCCCCCEEECCCCc-cccc--ccccccccccEEE
Confidence 9999999 88865443444 7999999999997766531 22345678999999999997 7754 3577899999999
Q ss_pred ccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeecc
Q 006015 514 SRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHL 593 (664)
Q Consensus 514 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l 593 (664)
+++| .++.. .+..+.++++|++|++++| .++..... ....+++|+.|++++|+++...+.. +..+++|+.+++
T Consensus 225 Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L 297 (452)
T 3zyi_A 225 MSGN-HFPEI-RPGSFHGLSSLKKLWVMNS-QVSLIERN-AFDGLASLVELNLAHNNLSSLPHDL---FTPLRYLVELHL 297 (452)
T ss_dssp CTTS-CCSEE-CGGGGTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTS---STTCTTCCEEEC
T ss_pred CcCC-cCccc-CcccccCccCCCEEEeCCC-cCceECHH-HhcCCCCCCEEECCCCcCCccChHH---hccccCCCEEEc
Confidence 9999 55552 4567889999999999999 44433222 2234799999999999998755443 455667778888
Q ss_pred CCCCHH
Q 006015 594 KGLSLN 599 (664)
Q Consensus 594 ~~n~~~ 599 (664)
++|.+.
T Consensus 298 ~~Np~~ 303 (452)
T 3zyi_A 298 HHNPWN 303 (452)
T ss_dssp CSSCEE
T ss_pred cCCCcC
Confidence 888754
No 71
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=1.2e-18 Score=170.74 Aligned_cols=231 Identities=20% Similarity=0.227 Sum_probs=114.7
Q ss_pred CCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCcc
Q 006015 278 GGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLR 357 (664)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (664)
++++.|+++++ .+. .++..+..+++|++|++++|.+. ..+..+. .+++|++|++++|. +. .++..+..+++|+
T Consensus 81 ~~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~-l~--~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 81 PGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNP-LR--ALPASIASLNRLR 153 (328)
T ss_dssp TTCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCC-CC--CCCGGGGGCTTCC
T ss_pred cceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCc-cc--cCcHHHhcCcCCC
Confidence 33444444443 222 23334444555555555555554 2333333 45555555555553 22 2233344555566
Q ss_pred EEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcc
Q 006015 358 KLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKL 437 (664)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (664)
.|++++|...... ...+....+.+. ...+++|++|++++|.+. ..+..+.++++|+.|++
T Consensus 154 ~L~L~~n~~~~~~--------p~~~~~~~~~~~-----------~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 154 ELSIRACPELTEL--------PEPLASTDASGE-----------HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213 (328)
T ss_dssp EEEEEEETTCCCC--------CSCSEEEC-CCC-----------EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred EEECCCCCCcccc--------ChhHhhccchhh-----------hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence 6665554432210 011111111110 114666777777666665 34455666667777777
Q ss_pred cCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCC
Q 006015 438 GICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGC 517 (664)
Q Consensus 438 ~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (664)
++| .++.. +..+. .+++|++|++++|.... .++..+..+++|++|++++|. +.+..+..+..+++|+.|++++|
T Consensus 214 ~~N-~l~~l-~~~l~-~l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 214 RNS-PLSAL-GPAIH-HLPKLEELDLRGCTALR--NYPPIFGGRAPLKRLILKDCS-NLLTLPLDIHRLTQLEKLDLRGC 287 (328)
T ss_dssp ESS-CCCCC-CGGGG-GCTTCCEEECTTCTTCC--BCCCCTTCCCCCCEEECTTCT-TCCBCCTTGGGCTTCCEEECTTC
T ss_pred cCC-CCCcC-chhhc-cCCCCCEEECcCCcchh--hhHHHhcCCCCCCEEECCCCC-chhhcchhhhcCCCCCEEeCCCC
Confidence 766 55542 12222 56666666666665332 223334455666666666665 44444445556666666666666
Q ss_pred CCCCHHHHHHHHhcCCcCcEEeccCc
Q 006015 518 PLITSLGLAAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 518 ~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (664)
+..+. +|..+.++++|+.+++..+
T Consensus 288 ~~~~~--iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 288 VNLSR--LPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TTCCC--CCGGGGGSCTTCEEECCGG
T ss_pred Cchhh--ccHHHhhccCceEEeCCHH
Confidence 44443 4555556666666665544
No 72
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=1.7e-18 Score=166.79 Aligned_cols=238 Identities=16% Similarity=0.034 Sum_probs=148.2
Q ss_pred CCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCC
Q 006015 303 SMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGL 382 (664)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (664)
++|+.|+++++.+.......+. .+++|++|+++++. ++.. .+..+.. +++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~-~~~~L~~L~l~~n~-l~~~-~~~~~~~--------------------------l~~L 82 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNV-LARI-DAAAFTG--------------------------LALL 82 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CCEE-CTTTTTT--------------------------CTTC
T ss_pred CCceEEEeeCCcCCccCHHHcc-cCCCCCEEECCCCc-ccee-CHhhcCC--------------------------ccCC
Confidence 4666666666665543333333 45555566555543 2211 0112233 4455
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEE
Q 006015 383 TSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELD 462 (664)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 462 (664)
++|++++|..+.......+. .+++|++|++++|.+....+..+.++++|+.|++++| .++......+. .+++|++|+
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~ 159 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFR-DLGNLTHLF 159 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEE
T ss_pred CEEeCCCCCCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhc-cCCCccEEE
Confidence 55555554322211111222 5677888888877777766667777888888888888 77654333333 678888888
Q ss_pred cCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccC
Q 006015 463 LYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKW 542 (664)
Q Consensus 463 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 542 (664)
+++|. ++. .....+..+++|++|++++|. +++..+..+..+++|+.|++++| .++.. .+..+..+++|++|++++
T Consensus 160 l~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 160 LHGNR-ISS-VPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSAL-PTEALAPLRALQYLRLND 234 (285)
T ss_dssp CCSSC-CCE-ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCC-CHHHHTTCTTCCEEECCS
T ss_pred CCCCc-ccc-cCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcC-CHHHcccCcccCEEeccC
Confidence 88876 542 112234567889999999987 88777778888899999999998 55542 445678899999999999
Q ss_pred ccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhh
Q 006015 543 CHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLA 580 (664)
Q Consensus 543 ~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 580 (664)
|+...+.....+.. .++.+..+.+.+....|..+.
T Consensus 235 N~~~c~~~~~~~~~---~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 235 NPWVCDCRARPLWA---WLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp SCEECSGGGHHHHH---HHHHCCSEECCCBEEESGGGT
T ss_pred CCccCCCCcHHHHH---HHHhcccccCccccCCchHhC
Confidence 97655555444432 345555666766665665544
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2e-19 Score=186.02 Aligned_cols=247 Identities=17% Similarity=0.127 Sum_probs=166.0
Q ss_pred CCchhHHHHHhhC----CCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCC
Q 006015 341 VTDEGLSYVATKH----RDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDN 416 (664)
Q Consensus 341 ~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (664)
++...++..+..+ ++|+.|++++|.. ... .+..+..+++|+.|++++|....... + ..+++|++|++++|
T Consensus 17 ~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l-~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---l-~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 17 VTDSSLKQALASLRQSAWNVKELDLSGNPL-SQI-SAADLAPFTKLELLNLSSNVLYETLD---L-ESLSTLRTLDLNNN 90 (487)
T ss_dssp CCTTTHHHHHHTTSTTGGGCCEEECCSSCC-CCC-CGGGGTTCTTCCEEECTTSCCEEEEE---C-TTCTTCCEEECCSS
T ss_pred CchhhhHHHHHHhcccCCCccEEEeeCCcC-CCC-CHHHHhCCCCCCEEEeeCCCCCCCcc---c-ccCCCCCEEEecCC
Confidence 3344555555444 3799999988863 332 22345678889999998876532111 3 37888888888888
Q ss_pred CCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCC
Q 006015 417 EIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDIT 496 (664)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 496 (664)
.+.+. ...++|+.|++++| .++.... ..+++|+.|++++|. ++. ..+..+..+++|++|++++|. ++
T Consensus 91 ~l~~l-----~~~~~L~~L~L~~N-~l~~~~~----~~l~~L~~L~L~~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~-l~ 157 (487)
T 3oja_A 91 YVQEL-----LVGPSIETLHAANN-NISRVSC----SRGQGKKNIYLANNK-ITM-LRDLDEGCRSRVQYLDLKLNE-ID 157 (487)
T ss_dssp EEEEE-----EECTTCCEEECCSS-CCCCEEE----CCCSSCEEEECCSSC-CCS-GGGBCGGGGSSEEEEECTTSC-CC
T ss_pred cCCCC-----CCCCCcCEEECcCC-cCCCCCc----cccCCCCEEECCCCC-CCC-CCchhhcCCCCCCEEECCCCC-CC
Confidence 77652 23478888888888 7776432 246888888888887 542 223334567888888888887 77
Q ss_pred HHHHHhhh-cCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhH
Q 006015 497 DSSLLSLS-KCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVG 575 (664)
Q Consensus 497 ~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 575 (664)
+..+..+. .+++|+.|++++| .++.. +. ...+++|+.|++++|. ++.. .+....+++|+.|++++|.+++ .
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~-~~~l~~L~~L~Ls~N~-l~~~--~~~~~~l~~L~~L~Ls~N~l~~-l 229 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYN-FIYDV--KG-QVVFAKLKTLDLSSNK-LAFM--GPEFQSAAGVTWISLRNNKLVL-I 229 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTS-CCCEE--EC-CCCCTTCCEEECCSSC-CCEE--CGGGGGGTTCSEEECTTSCCCE-E
T ss_pred CcChHHHhhhCCcccEEecCCC-ccccc--cc-cccCCCCCEEECCCCC-CCCC--CHhHcCCCCccEEEecCCcCcc-c
Confidence 76666665 6888888888888 45442 21 2257888888888884 4432 2223346888888888888876 3
Q ss_pred HHHhhCCcccccceeeccCCCCHH--HHHHHHHhCCcccceeee
Q 006015 576 LLSLASISCLQNMTILHLKGLSLN--GLAAALLACGGITKVKLQ 617 (664)
Q Consensus 576 ~~~l~~~~~L~~L~~l~l~~n~~~--~~~~~~~~~~~L~~l~l~ 617 (664)
|.. +..+++|..+++++|.+. .++..+..++.|+.++++
T Consensus 230 p~~---l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 230 EKA---LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CTT---CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred chh---hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 333 445566678888888877 444545558888877765
No 74
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=1.5e-18 Score=169.97 Aligned_cols=232 Identities=16% Similarity=0.169 Sum_probs=118.9
Q ss_pred CCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCC
Q 006015 175 CKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSL 254 (664)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (664)
.++++.|+++++ .+..++... ..+++|++|++++|.++ .+|..++++++|++|++++|..... ...+.. +++|
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l--~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~l--p~~l~~-l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQA--FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRAL--PASIAS-LNRL 152 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCG--GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCC--CGGGGG-CTTC
T ss_pred ccceeEEEccCC-CchhcChhh--hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccC--cHHHhc-CcCC
Confidence 467777777776 344444332 25677777777777666 5666666677777777776654421 112444 6666
Q ss_pred CEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEE
Q 006015 255 KALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELS 334 (664)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (664)
++|++++|..... ++. .+....+ ...+..+++|+.|++++|.+. ..+..+. .+++|++|+
T Consensus 153 ~~L~L~~n~~~~~--~p~------~~~~~~~----------~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~ 212 (328)
T 4fcg_A 153 RELSIRACPELTE--LPE------PLASTDA----------SGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLK 212 (328)
T ss_dssp CEEEEEEETTCCC--CCS------CSEEEC-----------CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEE
T ss_pred CEEECCCCCCccc--cCh------hHhhccc----------hhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEE
Confidence 6666666543321 000 0101000 011334566666666666554 2333343 556666666
Q ss_pred cCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEcc
Q 006015 335 LSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLT 414 (664)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (664)
+++|. +. .++..+..+++|++|++++|..... ++..+..+++|+.|++++|..... ....+. .+++|++|+++
T Consensus 213 L~~N~-l~--~l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~-~p~~~~-~l~~L~~L~L~ 285 (328)
T 4fcg_A 213 IRNSP-LS--ALGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT-LPLDIH-RLTQLEKLDLR 285 (328)
T ss_dssp EESSC-CC--CCCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB-CCTTGG-GCTTCCEEECT
T ss_pred ccCCC-CC--cCchhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh-cchhhh-cCCCCCEEeCC
Confidence 66654 22 1222345566666666666553322 112233455555555555443221 111122 55566666666
Q ss_pred CCCCChhhHHhhccCCCccEEcccCC
Q 006015 415 DNEIDDEGLKSISRCSKLSVLKLGIC 440 (664)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (664)
+|.+.+..+..+.++++|+.+++..+
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhhccHHHhhccCceEEeCCHH
Confidence 66555555556666666666655544
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=4e-18 Score=176.32 Aligned_cols=236 Identities=14% Similarity=0.126 Sum_probs=119.3
Q ss_pred CCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccE
Q 006015 279 GLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRK 358 (664)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 358 (664)
+|+.|+++++ .+.+..+..+..+++|+.|++++|.+.+..+ +. .+++|++|++++|. ++
T Consensus 35 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~-~l~~L~~L~Ls~N~-l~---------------- 93 (487)
T 3oja_A 35 NVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD--LE-SLSTLRTLDLNNNY-VQ---------------- 93 (487)
T ss_dssp GCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT-TCTTCCEEECCSSE-EE----------------
T ss_pred CccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc-cCCCCCEEEecCCc-CC----------------
Confidence 5666666555 4444444555555555555555555433222 22 44455555555443 21
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEccc
Q 006015 359 LDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLG 438 (664)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 438 (664)
.. ...++|+.|++++|..... . ...+++|+.|++++|.+.+..+..++.+++|+.|+++
T Consensus 94 ----------~l------~~~~~L~~L~L~~N~l~~~-~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 152 (487)
T 3oja_A 94 ----------EL------LVGPSIETLHAANNNISRV-S----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK 152 (487)
T ss_dssp ----------EE------EECTTCCEEECCSSCCCCE-E----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECT
T ss_pred ----------CC------CCCCCcCEEECcCCcCCCC-C----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECC
Confidence 10 1224555555555433211 0 0134566666666666666555566666666666666
Q ss_pred CCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCC
Q 006015 439 ICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCP 518 (664)
Q Consensus 439 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 518 (664)
+| .++...+..+...+++|+.|++++|. ++.. +. ...+++|++|++++|. +++..+. +..+++|+.|++++|
T Consensus 153 ~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~--~~-~~~l~~L~~L~Ls~N~-l~~~~~~-~~~l~~L~~L~Ls~N- 224 (487)
T 3oja_A 153 LN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDV--KG-QVVFAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISLRNN- 224 (487)
T ss_dssp TS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEE--EC-CCCCTTCCEEECCSSC-CCEECGG-GGGGTTCSEEECTTS-
T ss_pred CC-CCCCcChHHHhhhCCcccEEecCCCc-cccc--cc-cccCCCCCEEECCCCC-CCCCCHh-HcCCCCccEEEecCC-
Confidence 66 66654444444456666666666665 4321 11 1135666666666665 5543332 555666666666666
Q ss_pred CCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeec
Q 006015 519 LITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLS 567 (664)
Q Consensus 519 ~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~ 567 (664)
.++. ++..+..+++|+.|++++|+. ...........++.|+.++++
T Consensus 225 ~l~~--lp~~l~~l~~L~~L~l~~N~l-~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 225 KLVL--IEKALRFSQNLEHFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCE--ECTTCCCCTTCCEEECTTCCB-CHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcc--cchhhccCCCCCEEEcCCCCC-cCcchHHHHHhCCCCcEEecc
Confidence 3433 344444556666666666632 212222223334555555543
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=1.6e-18 Score=166.04 Aligned_cols=209 Identities=19% Similarity=0.175 Sum_probs=139.2
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
+++++|+++++.+.+.....+.++++|+.|++++| .++......+. .+++|++|++++|. ++. .....+.++++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQ-SLSHLSTLILTGNP-IQS-LALGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTT-TCTTCCEEECTTCC-CCE-ECTTTTTTCTTCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHcc-CCcCCCEEECCCCc-cCc-cChhhhcCCcccc
Confidence 35777777777776655556667777777777777 66654333333 56777777777776 432 1123345677888
Q ss_pred EEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhH--HHHHhcCcccC-
Q 006015 486 MINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGM--LPLAHFSQNLR- 562 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~--~~~~~~~~~L~- 562 (664)
+|++++|. ++......+..+++|++|++++| .++...++..+.++++|++|++++| .++.... ......++.|.
T Consensus 104 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l 180 (276)
T 2z62_A 104 KLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180 (276)
T ss_dssp EEECTTSC-CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCE
T ss_pred EEECCCCC-ccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccce
Confidence 88888776 66555555777888888888888 4443224556778888888888888 4443321 11112233333
Q ss_pred eeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCcccceeee-hhhcccCC
Q 006015 563 QINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGITKVKLQ-AAFKQLLP 625 (664)
Q Consensus 563 ~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~-n~~~~~~p 625 (664)
.|++++|++++..+..+ ...+|+.+++++|.++.+++..+. +++|+.|+++ |++.+..|
T Consensus 181 ~L~ls~n~l~~~~~~~~----~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 181 SLDLSLNPMNFIQPGAF----KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEECCSSCCCEECTTSS----CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eeecCCCcccccCcccc----CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 78999999887543322 223688899999999888877655 8999999999 88887766
No 77
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.68 E-value=3.1e-18 Score=166.96 Aligned_cols=205 Identities=18% Similarity=0.173 Sum_probs=132.1
Q ss_pred hCCCCCEEEccCCCCChhhHHhh--ccCCCccEEcccCCCCCChHhHHHHhh----CCCCCcEEEcCCCCCCChHHHHHH
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSI--SRCSKLSVLKLGICLNITGEGLAHVGM----CCSKLKELDLYRCVGITDSGILTI 477 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~ 477 (664)
.+++|++|++++|.+.+..+..+ ..+++|+.|++++| .++.. +..+.. .+++|++|++++|. ++. ..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~-~~~~~ 168 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLN-FSCEQ 168 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCC-CCTTT
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcch-hHHHHHHHHhhcCCCcEEEeeCCC-Ccc-chHHH
Confidence 46777777777777766555554 66777888888777 66654 222221 12778888888776 432 12234
Q ss_pred HhcCCCCCEEeccCCCCCCHH--HHHhh--hcCCCCCEEEccCCCCCCH--HHHHHHHhcCCcCcEEeccCccccChhhH
Q 006015 478 ACGCPDLEMINIAYLKDITDS--SLLSL--SKCSRLNTFESRGCPLITS--LGLAAIAVGCKQLIKLDIKWCHNINDVGM 551 (664)
Q Consensus 478 ~~~~~~L~~L~l~~~~~l~~~--~~~~l--~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~L~~L~l~~~~~i~~~~~ 551 (664)
+..+++|++|++++|. +.+. .+..+ ..+++|++|++++| .++. ......+.++++|++|++++|+ ++....
T Consensus 169 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 245 (312)
T 1wwl_A 169 VRVFPALSTLDLSDNP-ELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAG 245 (312)
T ss_dssp CCCCSSCCEEECCSCT-TCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCC
T ss_pred hccCCCCCEEECCCCC-cCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccc
Confidence 4567788888888876 5543 23333 67788888888888 5552 1133455677888888888884 333221
Q ss_pred HHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee-hhhcc
Q 006015 552 LPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQ 622 (664)
Q Consensus 552 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~ 622 (664)
.+....+++|+.|++++|+++. +|..+ . ++|+.+++++|.++++|. +..+++|+.|+++ |.+.+
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~---~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLKQ-VPKGL---P--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCSS-CCSSC---C--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhhcCCCCEEECCCCccCh-hhhhc---c--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 1222236788888888888873 33322 2 577788888888888755 5558888888888 77663
No 78
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=4.4e-17 Score=171.74 Aligned_cols=228 Identities=19% Similarity=0.116 Sum_probs=112.3
Q ss_pred CCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCC
Q 006015 302 LSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTG 381 (664)
Q Consensus 302 l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (664)
+++|++|++++|.++.... .+++|++|++++|. ++. ++. .+++|+.|++++|.. +.. ...+++
T Consensus 80 l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~-l~~--l~~---~l~~L~~L~L~~N~l-~~l-----p~~l~~ 142 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV-----LPPGLLELSIFSNP-LTH--LPA---LPSGLCKLWIFGNQL-TSL-----PVLPPG 142 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC-----CCTTCCEEEECSCC-CCC--CCC---CCTTCCEEECCSSCC-SCC-----CCCCTT
T ss_pred CCCCCEEEcCCCcCCcCCC-----CCCCCCEEECcCCc-CCC--CCC---CCCCcCEEECCCCCC-CcC-----CCCCCC
Confidence 3455555555554432111 34555555555543 221 111 344555555555542 211 012355
Q ss_pred CcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEE
Q 006015 382 LTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKEL 461 (664)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L 461 (664)
|++|++++|.... +....++|+.|++++|.+.... ..+++|+.|++++| .++.. ....++|+.|
T Consensus 143 L~~L~Ls~N~l~~------l~~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N-~l~~l-----~~~~~~L~~L 206 (622)
T 3g06_A 143 LQELSVSDNQLAS------LPALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDN-QLASL-----PTLPSELYKL 206 (622)
T ss_dssp CCEEECCSSCCSC------CCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCC-----CCCCTTCCEE
T ss_pred CCEEECcCCcCCC------cCCccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCC-CCCCC-----CCccchhhEE
Confidence 5666665554321 0013355666666666555421 33456666666666 55431 1134566666
Q ss_pred EcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEecc
Q 006015 462 DLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIK 541 (664)
Q Consensus 462 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~ 541 (664)
++++|. ++. ++ ..+++|+.|++++|. ++... ..+++|+.|++++| .++. ++. .+++|+.|+++
T Consensus 207 ~L~~N~-l~~--l~---~~~~~L~~L~Ls~N~-L~~lp----~~l~~L~~L~Ls~N-~L~~--lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 207 WAYNNR-LTS--LP---ALPSGLKELIVSGNR-LTSLP----VLPSELKELMVSGN-RLTS--LPM---LPSGLLSLSVY 269 (622)
T ss_dssp ECCSSC-CSS--CC---CCCTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECC
T ss_pred ECcCCc-ccc--cC---CCCCCCCEEEccCCc-cCcCC----CCCCcCcEEECCCC-CCCc--CCc---ccccCcEEeCC
Confidence 666665 331 11 123566666666665 55322 34566666666666 4443 222 45666777776
Q ss_pred CccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCC
Q 006015 542 WCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASI 582 (664)
Q Consensus 542 ~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 582 (664)
+| .++.. ......+++|+.|++++|++++..+..+..+
T Consensus 270 ~N-~L~~l--p~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 270 RN-QLTRL--PESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp SS-CCCSC--CGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CC-CCCcC--CHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 66 33321 1122336667777777777766666655433
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=1.9e-16 Score=167.02 Aligned_cols=261 Identities=20% Similarity=0.155 Sum_probs=156.1
Q ss_pred CCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccE
Q 006015 279 GLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRK 358 (664)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 358 (664)
+++.|+++++ .++ .+|..+. ++|+.|++++|.+..... .+++|++|++++|. ++ .++. .+++|++
T Consensus 41 ~l~~L~ls~n-~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~-----~l~~L~~L~Ls~N~-l~--~lp~---~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGES-GLT-TLPDCLP--AHITTLVIPDNNLTSLPA-----LPPELRTLEVSGNQ-LT--SLPV---LPPGLLE 105 (622)
T ss_dssp CCCEEECCSS-CCS-CCCSCCC--TTCSEEEECSCCCSCCCC-----CCTTCCEEEECSCC-CS--CCCC---CCTTCCE
T ss_pred CCcEEEecCC-CcC-ccChhhC--CCCcEEEecCCCCCCCCC-----cCCCCCEEEcCCCc-CC--cCCC---CCCCCCE
Confidence 4666666655 343 2333332 688888888887753211 46788888888876 43 2222 6688888
Q ss_pred EecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEccc
Q 006015 359 LDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLG 438 (664)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 438 (664)
|++++|.. ... + ..+++|+.|++++|.... +...+++|++|++++|.+.... ...++|+.|+++
T Consensus 106 L~Ls~N~l-~~l--~---~~l~~L~~L~L~~N~l~~------lp~~l~~L~~L~Ls~N~l~~l~----~~~~~L~~L~L~ 169 (622)
T 3g06_A 106 LSIFSNPL-THL--P---ALPSGLCKLWIFGNQLTS------LPVLPPGLQELSVSDNQLASLP----ALPSELCKLWAY 169 (622)
T ss_dssp EEECSCCC-CCC--C---CCCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECC
T ss_pred EECcCCcC-CCC--C---CCCCCcCEEECCCCCCCc------CCCCCCCCCEEECcCCcCCCcC----CccCCCCEEECC
Confidence 88888763 221 1 146778888887765421 1113477888888877766421 124677777777
Q ss_pred CCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCC
Q 006015 439 ICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCP 518 (664)
Q Consensus 439 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 518 (664)
+| .++... ..+++|+.|++++|. ++. ++ ...++|+.|++++|. ++... ..+++|+.|++++|
T Consensus 170 ~N-~l~~l~-----~~~~~L~~L~Ls~N~-l~~--l~---~~~~~L~~L~L~~N~-l~~l~----~~~~~L~~L~Ls~N- 231 (622)
T 3g06_A 170 NN-QLTSLP-----MLPSGLQELSVSDNQ-LAS--LP---TLPSELYKLWAYNNR-LTSLP----ALPSGLKELIVSGN- 231 (622)
T ss_dssp SS-CCSCCC-----CCCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSSCC----CCCTTCCEEECCSS-
T ss_pred CC-CCCCCc-----ccCCCCcEEECCCCC-CCC--CC---CccchhhEEECcCCc-ccccC----CCCCCCCEEEccCC-
Confidence 77 666532 356777777777776 432 11 124677777777776 55321 12466777777777
Q ss_pred CCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCH
Q 006015 519 LITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSL 598 (664)
Q Consensus 519 ~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~ 598 (664)
.++. ++ ..+++|++|++++| .++.... .+++|+.|++++|+++. +|.. +.++++|+.+++++|.+
T Consensus 232 ~L~~--lp---~~l~~L~~L~Ls~N-~L~~lp~-----~~~~L~~L~Ls~N~L~~-lp~~---l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 232 RLTS--LP---VLPSELKELMVSGN-RLTSLPM-----LPSGLLSLSVYRNQLTR-LPES---LIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCSC--CC---CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSCCCS-CCGG---GGGSCTTCEEECCSCCC
T ss_pred ccCc--CC---CCCCcCcEEECCCC-CCCcCCc-----ccccCcEEeCCCCCCCc-CCHH---HhhccccCEEEecCCCC
Confidence 4444 22 45567777777777 3332221 35677777777777663 3433 33444555666777776
Q ss_pred HHHHH
Q 006015 599 NGLAA 603 (664)
Q Consensus 599 ~~~~~ 603 (664)
++..+
T Consensus 297 ~~~~~ 301 (622)
T 3g06_A 297 SERTL 301 (622)
T ss_dssp CHHHH
T ss_pred CCcCH
Confidence 65443
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=1.1e-16 Score=155.36 Aligned_cols=192 Identities=21% Similarity=0.269 Sum_probs=109.2
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCC
Q 006015 379 CTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKL 458 (664)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 458 (664)
+++|++|++++|....- ..+. .+++|++|++++|.+.+... +..+++|+.|++++| .+++. ..+. .+++|
T Consensus 40 l~~L~~L~l~~~~i~~l---~~~~-~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~--~~~~-~l~~L 109 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI---EGVQ-YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNV--SAIA-GLQSI 109 (308)
T ss_dssp HHTCCEEECTTSCCCCC---TTGG-GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCC--GGGT-TCTTC
T ss_pred cCCcCEEEeeCCCccCc---hhhh-ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCc--hhhc-CCCCC
Confidence 55677777777654221 1222 56777777777776665433 666777777777777 56553 2233 56677
Q ss_pred cEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEE
Q 006015 459 KELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKL 538 (664)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (664)
++|++++|. +++ +.. +..+++|++|++++|. +++... +..+++|+.|++++| .+++ ++. +..+++|+.|
T Consensus 110 ~~L~l~~n~-l~~--~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 110 KTLDLTSTQ-ITD--VTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNA-QVSD--LTP-LANLSKLTTL 178 (308)
T ss_dssp CEEECTTSC-CCC--CGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEE
T ss_pred CEEECCCCC-CCC--chh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCC-cCCC--Chh-hcCCCCCCEE
Confidence 777777666 442 122 4556677777777765 554332 556666667776666 4443 222 5566666666
Q ss_pred eccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHH
Q 006015 539 DIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNG 600 (664)
Q Consensus 539 ~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~ 600 (664)
++++| .++.... ...+++|++|++++|++++..+ +..+++|+.+++++|.++.
T Consensus 179 ~l~~n-~l~~~~~---l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 179 KADDN-KISDISP---LASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ECCSS-CCCCCGG---GGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEEEEEEEEC
T ss_pred ECCCC-ccCcChh---hcCCCCCCEEEccCCccCcccc-----ccCCCCCCEEEccCCeeec
Confidence 66666 3333221 2335666666666666665331 3444445555566655544
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=1.6e-17 Score=158.31 Aligned_cols=203 Identities=12% Similarity=0.110 Sum_probs=130.7
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+++|+.|+++++.+.. ...+..+++|+.|++++| .+++. ..+. .+++|++|++++|. ++. .....+..+++
T Consensus 39 ~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n-~l~~~--~~l~-~l~~L~~L~L~~n~-l~~-~~~~~~~~l~~ 110 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGN-KLHDI--SALK-ELTNLTYLILTGNQ-LQS-LPNGVFDKLTN 110 (272)
T ss_dssp HHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTS-CCCCC--GGGT-TCTTCCEEECTTSC-CCC-CCTTTTTTCTT
T ss_pred cccceeeeeeCCCCccc--ccccccCCCCcEEECCCC-CCCCc--hhhc-CCCCCCEEECCCCc-cCc-cChhHhcCCcC
Confidence 34566666666655543 234555666666666666 55542 2233 56677777777665 431 12223455677
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCe
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQ 563 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 563 (664)
|++|++++|. +++.....+..+++|++|++++| .++.. .+..+.++++|++|++++|+ ++.... .....+++|+.
T Consensus 111 L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~ 185 (272)
T 3rfs_A 111 LKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSL-PKGVFDKLTNLTELDLSYNQ-LQSLPE-GVFDKLTQLKD 185 (272)
T ss_dssp CCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCcc-CHHHhccCccCCEEECCCCC-cCccCH-HHhcCCccCCE
Confidence 7777777776 66655556677778888888877 45432 23345677888888888883 332221 11234788999
Q ss_pred eeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee-hhhcccCChhH
Q 006015 564 INLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQLLPQPL 628 (664)
Q Consensus 564 L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~~ 628 (664)
|++++|++++..+.. +..+++|+.+++++|.+. +.|+.|+.++++ |.+.|.+|..+
T Consensus 186 L~L~~N~l~~~~~~~---~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGV---FDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp EECCSSCCSCCCTTT---TTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTT
T ss_pred EECCCCcCCccCHHH---HhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcc
Confidence 999999888755433 455666778888888764 348899999999 99999998763
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=2.3e-17 Score=160.69 Aligned_cols=183 Identities=15% Similarity=0.092 Sum_probs=114.1
Q ss_pred cCCCCcEEEcCCCCCCCH---HHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHh-HH--HH
Q 006015 378 SCTGLTSLRMESCTLVPR---EAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEG-LA--HV 451 (664)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~-~~--~l 451 (664)
.+++|++|++++|..... .....+. .+++|++|++++|.+....+..+..+++|++|++++| .+.... .. ..
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~ 192 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDN-PGLGERGLMAALC 192 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSC-TTCHHHHHHTTSC
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCC-CCccchhhhHHHh
Confidence 344555555555443211 1112233 6788888888888887777778888889999999988 655421 11 11
Q ss_pred hhCCCCCcEEEcCCCCCCCh--HHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcC---CCCCEEEccCCCCCCHHHHH
Q 006015 452 GMCCSKLKELDLYRCVGITD--SGILTIACGCPDLEMINIAYLKDITDSSLLSLSKC---SRLNTFESRGCPLITSLGLA 526 (664)
Q Consensus 452 ~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~L~~L~l~~~~~l~~~~~~ 526 (664)
...+++|++|++++|. ++. .....++..+++|++|++++|. +++..+..+..+ ++|++|++++| .++. ++
T Consensus 193 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~--lp 267 (310)
T 4glp_A 193 PHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQ--VP 267 (310)
T ss_dssp TTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCS--CC
T ss_pred hhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCc--hh
Confidence 2367888888888887 542 2222345678888888988887 776555555554 68888888887 4543 33
Q ss_pred HHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCCh
Q 006015 527 AIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTD 573 (664)
Q Consensus 527 ~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 573 (664)
..+ .++|+.|++++| .++.. +....+++|+.|++++|++++
T Consensus 268 ~~~--~~~L~~L~Ls~N-~l~~~---~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 268 KGL--PAKLRVLDLSSN-RLNRA---PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCC--CSCCSCEECCSC-CCCSC---CCTTSCCCCSCEECSSTTTSC
T ss_pred hhh--cCCCCEEECCCC-cCCCC---chhhhCCCccEEECcCCCCCC
Confidence 222 256777777777 33322 112345677777777776654
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=1.6e-18 Score=166.15 Aligned_cols=211 Identities=16% Similarity=0.075 Sum_probs=163.0
Q ss_pred CCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCC
Q 006015 430 SKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRL 509 (664)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 509 (664)
++|+.|++++| .++......+. .+++|++|++++|. ++. .....+..+++|++|++++|. +++.....+..+++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~-~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFF-SFPELQVLDLSRCE-IQT-IEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTT-TCTTCSEEECTTCC-CCE-ECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTC
T ss_pred CCccEEECCCC-cccccCHhHhc-cccCCcEEECCCCc-CCc-cCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccc
Confidence 57999999999 88876554555 78999999999997 552 222345678999999999998 888777889999999
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccce
Q 006015 510 NTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMT 589 (664)
Q Consensus 510 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 589 (664)
++|++++| .++.. .+..+.++++|++|++++| .++...+......+++|++|++++|++++..+..+..+++++.+.
T Consensus 103 ~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 103 QKLVAVET-NLASL-ENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp CEEECTTS-CCCCS-TTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred cEEECCCC-Ccccc-CchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 99999999 44442 2224678999999999999 444433223344589999999999999987777777777777776
Q ss_pred -eeccCCCCHHHHHHHHHhCCcccceeee-hhhcccCChhH-HHHHHhcceEEEeeccccccc
Q 006015 590 -ILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQLLPQPL-IDHLQARGCVFQWRNKVFQAE 649 (664)
Q Consensus 590 -~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~ 649 (664)
.+++++|.++.+++..+...+|+.|+++ |.+. .+|... .....+...++..|+..+.|.
T Consensus 180 l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 180 LSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccCC
Confidence 7899999999988888777799999999 8887 555543 334456677777777776663
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=2.8e-17 Score=156.69 Aligned_cols=188 Identities=12% Similarity=0.009 Sum_probs=128.6
Q ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCC
Q 006015 377 SSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCS 456 (664)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 456 (664)
..+++|+.|++++|.... +..+. .+++|++|++++|.+.+..+..+..+++|+.|++++| .++......+. .++
T Consensus 60 ~~l~~L~~L~l~~n~l~~---~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~ 133 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHD---ISALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFD-KLT 133 (272)
T ss_dssp GGCTTCCEEECTTSCCCC---CGGGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT-TCT
T ss_pred ccCCCCcEEECCCCCCCC---chhhc-CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhc-cCC
Confidence 345556666665554322 11222 6777788888777777666666777788888888888 77654333333 678
Q ss_pred CCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCc
Q 006015 457 KLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLI 536 (664)
Q Consensus 457 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 536 (664)
+|++|++++|. ++. .....+..+++|++|++++|. +++.....+..+++|+.|++++| .++.. .+..+..+++|+
T Consensus 134 ~L~~L~L~~n~-l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~ 208 (272)
T 3rfs_A 134 NLTYLNLAHNQ-LQS-LPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQN-QLKSV-PDGVFDRLTSLQ 208 (272)
T ss_dssp TCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCC
T ss_pred CCCEEECCCCc-cCc-cCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCC-cCCcc-CHHHHhCCcCCC
Confidence 88888888876 542 222334567888888888887 77666666778888999999888 45442 344567788999
Q ss_pred EEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcc
Q 006015 537 KLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISC 584 (664)
Q Consensus 537 ~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~ 584 (664)
+|++++|+.. ..+++|+.++++.|.+++.+|..++.++.
T Consensus 209 ~L~l~~N~~~---------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 209 YIWLHDNPWD---------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp EEECCSSCBC---------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred EEEccCCCcc---------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 9999998542 22678889999999988887776665444
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.64 E-value=1.3e-17 Score=162.54 Aligned_cols=228 Identities=18% Similarity=0.144 Sum_probs=161.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHh--hCCCCCEEEccCCCCChhhHHhh--ccCCCccEEcccCCCCCChHh----HHH
Q 006015 379 CTGLTSLRMESCTLVPREAFVLIGQ--RCRFLEELDLTDNEIDDEGLKSI--SRCSKLSVLKLGICLNITGEG----LAH 450 (664)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~l~~~~----~~~ 450 (664)
...++.+.+.++.. ++..+..+.. .+++|++|++++|.+.+..+..+ ..+++|+.|++++| .++... ...
T Consensus 63 ~~~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~ 140 (310)
T 4glp_A 63 ALRVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQ 140 (310)
T ss_dssp SCCCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHH
T ss_pred hcceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHH
Confidence 44688899988654 4444333221 45789999999999988887777 78999999999999 877532 133
Q ss_pred HhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHH-H---HhhhcCCCCCEEEccCCCCCCHH-HH
Q 006015 451 VGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSS-L---LSLSKCSRLNTFESRGCPLITSL-GL 525 (664)
Q Consensus 451 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~---~~l~~~~~L~~L~l~~~~~l~~~-~~ 525 (664)
+. .+++|++|++++|. ++. .....+..+++|++|++++|. +.+.. . ..+..+++|++|++++| .++.. ..
T Consensus 141 ~~-~~~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~ 215 (310)
T 4glp_A 141 QW-LKPGLKVLSIAQAH-SPA-FSCEQVRAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGV 215 (310)
T ss_dssp TT-BCSCCCEEEEECCS-SCC-CCTTSCCCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHH
T ss_pred hh-hccCCCEEEeeCCC-cch-hhHHHhccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHH
Confidence 34 68999999999988 542 233445678999999999997 55432 1 22357899999999999 55531 12
Q ss_pred -HHHHhcCCcCcEEeccCccccChhhHHHHHh--cCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHH
Q 006015 526 -AAIAVGCKQLIKLDIKWCHNINDVGMLPLAH--FSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLA 602 (664)
Q Consensus 526 -~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~ 602 (664)
...+.++++|++|++++|+ ++......+.. .+++|++|++++|+++. +|..+ . ++|+.+++++|.+++++
T Consensus 216 ~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~---~--~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 216 CAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGL---P--AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp HHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCC---C--SCCSCEECCSCCCCSCC
T ss_pred HHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhh---c--CCCCEEECCCCcCCCCc
Confidence 2245788999999999994 44321111111 13799999999999884 44333 1 57778999999998875
Q ss_pred HHHHhCCcccceeee-hhhc
Q 006015 603 AALLACGGITKVKLQ-AAFK 621 (664)
Q Consensus 603 ~~~~~~~~L~~l~l~-n~~~ 621 (664)
. +..+++|+.|+++ |.+.
T Consensus 289 ~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp C-TTSCCCCSCEECSSTTTS
T ss_pred h-hhhCCCccEEECcCCCCC
Confidence 4 4458999999999 8776
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=1.6e-16 Score=154.06 Aligned_cols=193 Identities=20% Similarity=0.270 Sum_probs=139.9
Q ss_pred hCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCC
Q 006015 352 KHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSK 431 (664)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (664)
.+++|++|+++++.. ... + .+..+++|+.|++++|....... + ..+++|++|++++|.+.+. ..+..+++
T Consensus 39 ~l~~L~~L~l~~~~i-~~l--~-~~~~l~~L~~L~L~~n~i~~~~~---~-~~l~~L~~L~L~~n~l~~~--~~~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGTGV-TTI--E-GVQYLNNLIGLELKDNQITDLAP---L-KNLTKITELELSGNPLKNV--SAIAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTSCC-CCC--T-TGGGCTTCCEEECCSSCCCCCGG---G-TTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred HcCCcCEEEeeCCCc-cCc--h-hhhccCCCCEEEccCCcCCCChh---H-ccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence 567888899888763 332 2 24668889999998876532221 3 3788899999998888763 46778889
Q ss_pred ccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCE
Q 006015 432 LSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNT 511 (664)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~ 511 (664)
|+.|++++| .+++.. .+. .+++|++|++++|. ++.. .. +..+++|++|++++|. +++... +..+++|+.
T Consensus 109 L~~L~l~~n-~l~~~~--~l~-~l~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~ 177 (308)
T 1h6u_A 109 IKTLDLTST-QITDVT--PLA-GLSNLQVLYLDLNQ-ITNI--SP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTT 177 (308)
T ss_dssp CCEEECTTS-CCCCCG--GGT-TCTTCCEEECCSSC-CCCC--GG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCE
T ss_pred CCEEECCCC-CCCCch--hhc-CCCCCCEEECCCCc-cCcC--cc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCE
Confidence 999999988 777643 233 78899999998887 5432 22 5678889999999887 775443 778889999
Q ss_pred EEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCCh
Q 006015 512 FESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTD 573 (664)
Q Consensus 512 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 573 (664)
|++++| .+++. +. +..+++|++|++++| .++... + ...+++|+.|++++|++++
T Consensus 178 L~l~~n-~l~~~--~~-l~~l~~L~~L~L~~N-~l~~~~--~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 178 LKADDN-KISDI--SP-LASLPNLIEVHLKNN-QISDVS--P-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECCSS-CCCCC--GG-GGGCTTCCEEECTTS-CCCBCG--G-GTTCTTCCEEEEEEEEEEC
T ss_pred EECCCC-ccCcC--hh-hcCCCCCCEEEccCC-ccCccc--c-ccCCCCCCEEEccCCeeec
Confidence 999888 55542 22 678889999999988 444433 2 3447889999999988765
No 87
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.62 E-value=6.9e-15 Score=145.65 Aligned_cols=190 Identities=15% Similarity=0.196 Sum_probs=121.9
Q ss_pred CCCCCEEEccCCCCChhhHHhhcc-----CCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHh
Q 006015 405 CRFLEELDLTDNEIDDEGLKSISR-----CSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIAC 479 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 479 (664)
.+.|++|++++|.++......+.. .++|+.|++++| .+++.+...+...+++|++|++++|. +++.+...+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHH
Confidence 356666666666666655544433 257777777777 77776666666566677777777776 66655544332
Q ss_pred ----cCCCCCEEeccCCCCCCHHHHHhh----hcCCCCCEEEccCCCCCCHHHH---HHHHhcCCcCcEEeccCccccCh
Q 006015 480 ----GCPDLEMINIAYLKDITDSSLLSL----SKCSRLNTFESRGCPLITSLGL---AAIAVGCKQLIKLDIKWCHNIND 548 (664)
Q Consensus 480 ----~~~~L~~L~l~~~~~l~~~~~~~l----~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~i~~ 548 (664)
.+++|++|++++|. +++.....+ ..+++|++|+|++| .+++.++ ...+..+++|+.|++++| .+++
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCH
Confidence 35677788887776 766555444 45777888888887 5665543 344556778888888888 6777
Q ss_pred hhHHHHHh---cCcccCeeeeccCCCChhHHHHhhCCccccc--ceeec--cCCCCHH
Q 006015 549 VGMLPLAH---FSQNLRQINLSYTSVTDVGLLSLASISCLQN--MTILH--LKGLSLN 599 (664)
Q Consensus 549 ~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~--L~~l~--l~~n~~~ 599 (664)
.+...+.. ..++|++|+|++|.|++.+...+..+..... |+.+. +.++.+.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 66655443 3578888888888888888877776555443 66766 6555554
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=1e-16 Score=152.70 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=86.6
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
+++++|+++++.+.......+.++++|++|++++| .++......+ ..+++|++|++++|.
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~-~~l~~L~~L~l~~n~------------------ 96 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIF-KELKNLETLWVTDNK------------------ 96 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTT-SSCTTCCEEECCSSC------------------
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhh-cCCCCCCEEECCCCc------------------
Confidence 34666666666555544445555566666666655 4443221111 244555555555544
Q ss_pred EEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeee
Q 006015 486 MINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQIN 565 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~ 565 (664)
++......+..+++|++|++++| .++.. .+..+..+++|++|++++| .++..... ....+++|+.|+
T Consensus 97 ---------l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~ 163 (270)
T 2o6q_A 97 ---------LQALPIGVFDQLVNLAELRLDRN-QLKSL-PPRVFDSLTKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELR 163 (270)
T ss_dssp ---------CCCCCTTTTTTCSSCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEE
T ss_pred ---------CCcCCHhHcccccCCCEEECCCC-ccCee-CHHHhCcCcCCCEEECCCC-cCCccCHh-HccCCcccceeE
Confidence 33333333444444444444444 22221 1222334455555555555 22211100 012245666666
Q ss_pred eccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCcccceeee-hhhcc
Q 006015 566 LSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGITKVKLQ-AAFKQ 622 (664)
Q Consensus 566 l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~-n~~~~ 622 (664)
+++|.+++..+.. +..+++|+.+++++|.++.+++..+. +++|+.|+++ |++..
T Consensus 164 L~~n~l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 164 LYNNQLKRVPEGA---FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCSSCCSCCCTTT---TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ecCCcCcEeChhH---hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 6666655533222 33444555666666666655554433 6667777776 65543
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=6.9e-17 Score=155.00 Aligned_cols=202 Identities=16% Similarity=0.123 Sum_probs=155.0
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.++++++++++++.++.. +..+ .++++.|++++| .++......+. .+++|++|++++|. ++.. ... ..+++
T Consensus 8 ~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N-~l~~~~~~~~~-~l~~L~~L~L~~n~-l~~~--~~~-~~l~~ 78 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSEN-LLYTFSLATLM-PYTRLTQLNLDRAE-LTKL--QVD-GTLPV 78 (290)
T ss_dssp CSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTS-CCSEEEGGGGT-TCTTCCEEECTTSC-CCEE--ECC-SCCTT
T ss_pred ccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCC-cCCccCHHHhh-cCCCCCEEECCCCc-cCcc--cCC-CCCCc
Confidence 678999999999887753 3333 368999999999 88876555555 79999999999988 6532 111 57899
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCe
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQ 563 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 563 (664)
|++|++++|. ++. .+..+..+++|++|++++| .++.. .+..+.++++|++|++++|+ ++.... .....+++|+.
T Consensus 79 L~~L~Ls~N~-l~~-l~~~~~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~ 152 (290)
T 1p9a_G 79 LGTLDLSHNQ-LQS-LPLLGQTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGNE-LKTLPP-GLLTPTPKLEK 152 (290)
T ss_dssp CCEEECCSSC-CSS-CCCCTTTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCEEECCCCc-CCc-CchhhccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCCC-CCccCh-hhcccccCCCE
Confidence 9999999997 763 3345678999999999999 55542 33567789999999999994 443221 11234789999
Q ss_pred eeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee-hhhccc
Q 006015 564 INLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQL 623 (664)
Q Consensus 564 L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~ 623 (664)
|++++|+++...+. .+..+++|+.+++++|.++.+|..++..++|+.++++ |++...
T Consensus 153 L~L~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 153 LSLANNNLTELPAG---LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp EECTTSCCSCCCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred EECCCCcCCccCHH---HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 99999999874432 2566777889999999999999988888999999999 877643
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.55 E-value=3e-16 Score=150.57 Aligned_cols=202 Identities=16% Similarity=0.141 Sum_probs=154.9
Q ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCC
Q 006015 377 SSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCS 456 (664)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 456 (664)
..++++++++++++.... .... -.++++.|++++|.+....+..+..+++|+.|++++| .++..... ..++
T Consensus 7 ~~l~~l~~l~~~~~~l~~--ip~~---~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~---~~l~ 77 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTA--LPPD---LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD---GTLP 77 (290)
T ss_dssp ECSTTCCEEECTTSCCSS--CCSC---CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC---SCCT
T ss_pred cccCCccEEECCCCCCCc--CCCC---CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC---CCCC
Confidence 457899999999866421 1111 2368999999999999888889999999999999999 88764332 3789
Q ss_pred CCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCc
Q 006015 457 KLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLI 536 (664)
Q Consensus 457 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~ 536 (664)
+|++|++++|. ++ .++..+..+++|++|++++|. ++......+..+++|+.|++++| .++.. .+..+..+++|+
T Consensus 78 ~L~~L~Ls~N~-l~--~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~ 151 (290)
T 1p9a_G 78 VLGTLDLSHNQ-LQ--SLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTL-PPGLLTPTPKLE 151 (290)
T ss_dssp TCCEEECCSSC-CS--SCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCC
T ss_pred cCCEEECCCCc-CC--cCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCC-CCCcc-ChhhcccccCCC
Confidence 99999999997 54 344455678999999999998 88777778899999999999999 55542 344567899999
Q ss_pred EEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHH
Q 006015 537 KLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLN 599 (664)
Q Consensus 537 ~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~ 599 (664)
.|++++|+ ++.... .....+++|+.|++++|+++. +|..+. .+..|+.+++++|.+.
T Consensus 152 ~L~L~~N~-l~~l~~-~~~~~l~~L~~L~L~~N~l~~-ip~~~~---~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 152 KLSLANNN-LTELPA-GLLNGLENLDTLLLQENSLYT-IPKGFF---GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp EEECTTSC-CSCCCT-TTTTTCTTCCEEECCSSCCCC-CCTTTT---TTCCCSEEECCSCCBC
T ss_pred EEECCCCc-CCccCH-HHhcCcCCCCEEECCCCcCCc-cChhhc---ccccCCeEEeCCCCcc
Confidence 99999994 443221 122347999999999999985 444433 3446678888888764
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.54 E-value=9.7e-16 Score=145.88 Aligned_cols=202 Identities=13% Similarity=0.071 Sum_probs=131.5
Q ss_pred CccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccE
Q 006015 355 DLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSV 434 (664)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (664)
..+.++++++.. +.. +. .-.++++.|++++|... ......+. .+++|++|+++++.+.......+..+++|+.
T Consensus 17 ~~~~l~~~~~~l-~~i--p~--~~~~~l~~L~l~~n~l~-~~~~~~~~-~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKL-TAI--PS--NIPADTKKLDLQSNKLS-SLPSKAFH-RLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCC-SSC--CS--CCCTTCSEEECCSSCCS-CCCTTSSS-SCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCC-Ccc--CC--CCCCCCCEEECcCCCCC-eeCHHHhc-CCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 466777776552 221 11 12357999999997652 22222233 7899999999999998766677788999999
Q ss_pred EcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEc
Q 006015 435 LKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFES 514 (664)
Q Consensus 435 L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l 514 (664)
|++++| .++......+. .+++|++|++++|. ++. .....+..+++|++|++++|. ++......+..+++|+.|++
T Consensus 90 L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~n~-l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 164 (270)
T 2o6q_A 90 LWVTDN-KLQALPIGVFD-QLVNLAELRLDRNQ-LKS-LPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL 164 (270)
T ss_dssp EECCSS-CCCCCCTTTTT-TCSSCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred EECCCC-cCCcCCHhHcc-cccCCCEEECCCCc-cCe-eCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEe
Confidence 999999 88764433333 68889999998887 442 122334567888888888886 77666566777788888888
Q ss_pred cCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCC
Q 006015 515 RGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVT 572 (664)
Q Consensus 515 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 572 (664)
++| .++.. .+..+.++++|++|++++| .++..... ....+++|+.|++++|++.
T Consensus 165 ~~n-~l~~~-~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 165 YNN-QLKRV-PEGAFDKLTELKTLKLDNN-QLKRVPEG-AFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CSS-CCSCC-CTTTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSSCBC
T ss_pred cCC-cCcEe-ChhHhccCCCcCEEECCCC-cCCcCCHH-HhccccCCCEEEecCCCee
Confidence 877 44431 2233456667777777776 33322111 1122566666666666643
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=8.2e-15 Score=140.68 Aligned_cols=149 Identities=23% Similarity=0.226 Sum_probs=89.8
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+++|++|++++|.+.+..+ +..+++|+.|++++| .+++. ..+. .+++|++|++++|. +++ + ..+..+++
T Consensus 66 ~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~--~~l~-~l~~L~~L~L~~n~-i~~--~-~~l~~l~~ 135 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDL--SSLK-DLKKLKSLSLEHNG-ISD--I-NGLVHLPQ 135 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCG--GGGT-TCTTCCEEECTTSC-CCC--C-GGGGGCTT
T ss_pred cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCC--hhhc-cCCCCCEEECCCCc-CCC--C-hhhcCCCC
Confidence 56666666666666655333 566666777777666 56552 2233 56677777777665 432 1 22445677
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCe
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQ 563 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 563 (664)
|++|++++|. +++. ..+..+++|+.|++++| .+++. +. +..+++|+.|++++| .+++.. ....+++|+.
T Consensus 136 L~~L~l~~n~-l~~~--~~l~~l~~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~L~~N-~i~~l~---~l~~l~~L~~ 204 (291)
T 1h6t_A 136 LESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDN-QISDI--VP-LAGLTKLQNLYLSKN-HISDLR---ALAGLKNLDV 204 (291)
T ss_dssp CCEEECCSSC-CCCC--GGGGGCTTCSEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCBCG---GGTTCTTCSE
T ss_pred CCEEEccCCc-CCcc--hhhccCCCCCEEEccCC-ccccc--hh-hcCCCccCEEECCCC-cCCCCh---hhccCCCCCE
Confidence 7777777765 5543 45666777777777777 44442 22 556777777777777 444432 1334677777
Q ss_pred eeeccCCCCh
Q 006015 564 INLSYTSVTD 573 (664)
Q Consensus 564 L~l~~n~l~~ 573 (664)
|++++|+++.
T Consensus 205 L~l~~n~i~~ 214 (291)
T 1h6t_A 205 LELFSQECLN 214 (291)
T ss_dssp EEEEEEEEEC
T ss_pred EECcCCcccC
Confidence 7777777655
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=2.1e-16 Score=147.60 Aligned_cols=129 Identities=10% Similarity=0.032 Sum_probs=60.5
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCC-CChhhHHhhccCCCccEEcccC-CCCCChHhHHHHhhCCCCC
Q 006015 381 GLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNE-IDDEGLKSISRCSKLSVLKLGI-CLNITGEGLAHVGMCCSKL 458 (664)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~~l~~~~~~~l~~~~~~L 458 (664)
+++.|++++|.. .......+. .+++|++|++++|. +.......+..+++|+.|++++ | .++......+. .+++|
T Consensus 32 ~l~~L~l~~n~l-~~i~~~~~~-~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~-~l~~L 107 (239)
T 2xwt_C 32 STQTLKLIETHL-RTIPSHAFS-NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALK-ELPLL 107 (239)
T ss_dssp TCCEEEEESCCC-SEECTTTTT-TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEE-CCTTC
T ss_pred cccEEEEeCCcc-eEECHHHcc-CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhC-CCCCC
Confidence 556666655443 111111122 45556666666554 5544444555555666666655 4 45443222222 45555
Q ss_pred cEEEcCCCCCCChHHHHHHHhcCCCCC---EEeccCCCCCCHHHHHhhhcCCCCC-EEEccCC
Q 006015 459 KELDLYRCVGITDSGILTIACGCPDLE---MINIAYLKDITDSSLLSLSKCSRLN-TFESRGC 517 (664)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~~~l~~~~~L~-~L~l~~~ 517 (664)
++|++++|. ++. ++. +..+++|+ +|++++|..++......+..+++|+ .|++++|
T Consensus 108 ~~L~l~~n~-l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 108 KFLGIFNTG-LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp CEEEEEEEC-CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred CEEeCCCCC-Ccc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 555555554 321 222 33444444 5555555224444444444455555 5555554
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=1.4e-14 Score=130.38 Aligned_cols=107 Identities=15% Similarity=0.194 Sum_probs=45.3
Q ss_pred CCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcc
Q 006015 481 CPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQN 560 (664)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~ 560 (664)
+++|++|++++|. +++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++|+.+++.. ....+++
T Consensus 87 l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~ 160 (197)
T 4ezg_A 87 LSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHS-AHDDS-ILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPE 160 (197)
T ss_dssp CTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSS-BCBGG-GHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSS
T ss_pred CCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCC-ccCcH-hHHHHhhCCCCCEEEccCCCCccccH---hhcCCCC
Confidence 4444444444443 44333444444444555555444 33221 22334444555555555553233321 1222455
Q ss_pred cCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCH
Q 006015 561 LRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSL 598 (664)
Q Consensus 561 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~ 598 (664)
|+.|++++|++++.. .+..+++|+.+++++|.+
T Consensus 161 L~~L~l~~n~i~~~~-----~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 161 LKSLNIQFDGVHDYR-----GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCEEECTTBCCCCCT-----TGGGCSSCCEEEECBC--
T ss_pred CCEEECCCCCCcChH-----HhccCCCCCEEEeeCccc
Confidence 555555555554411 233334444555555544
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.49 E-value=3.7e-14 Score=136.10 Aligned_cols=171 Identities=16% Similarity=0.158 Sum_probs=112.8
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+++|+.|+++++.+.+. ..+..+++|+.|++++| .+++... + ..+++|++|++++|. +++ ++. +..+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n-~l~~~~~--l-~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~ 113 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN-KLTDIKP--L-ANLKNLGWLFLDENK-VKD--LSS-LKDLKK 113 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCGG--G-TTCTTCCEEECCSSC-CCC--GGG-GTTCTT
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCC-ccCCCcc--c-ccCCCCCEEECCCCc-CCC--Chh-hccCCC
Confidence 456778888887777653 34677888888888888 7776433 3 377888888888876 543 222 566788
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCe
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQ 563 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 563 (664)
|++|++++|. +++. ..+..+++|+.|++++| .++. + ..+..+++|+.|++++| .++.... ...+++|+.
T Consensus 114 L~~L~L~~n~-i~~~--~~l~~l~~L~~L~l~~n-~l~~--~-~~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~ 182 (291)
T 1h6t_A 114 LKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNN-KITD--I-TVLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQN 182 (291)
T ss_dssp CCEEECTTSC-CCCC--GGGGGCTTCCEEECCSS-CCCC--C-GGGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCE
T ss_pred CCEEECCCCc-CCCC--hhhcCCCCCCEEEccCC-cCCc--c-hhhccCCCCCEEEccCC-ccccchh---hcCCCccCE
Confidence 8888888876 6653 45667778888888877 4544 2 34567777777777777 3443322 334677777
Q ss_pred eeeccCCCChhHHHHhhCCcccccceeeccCCCCHHH
Q 006015 564 INLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNG 600 (664)
Q Consensus 564 L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~ 600 (664)
|++++|.+++. ..+..+++|+.+++++|.+..
T Consensus 183 L~L~~N~i~~l-----~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISDL-----RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EECCSSCCCBC-----GGGTTCTTCSEEEEEEEEEEC
T ss_pred EECCCCcCCCC-----hhhccCCCCCEEECcCCcccC
Confidence 77777777663 224455556666666665543
No 96
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.48 E-value=1.9e-13 Score=135.27 Aligned_cols=172 Identities=20% Similarity=0.243 Sum_probs=139.8
Q ss_pred CCCccEEcccCCCCCChHhHHHHhhC----CCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhh
Q 006015 429 CSKLSVLKLGICLNITGEGLAHVGMC----CSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLS 504 (664)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 504 (664)
.+.|+.|++++| .+++.....+... .++|++|++++|. +++.++..+...+++|++|++++|. +++.....+.
T Consensus 71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHH
T ss_pred HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHH
Confidence 468999999999 8998776665532 3699999999998 8888888888888899999999997 9988877764
Q ss_pred -----cCCCCCEEEccCCCCCCHHH---HHHHHhcCCcCcEEeccCccccChhhHHHHHh---cCcccCeeeeccCCCCh
Q 006015 505 -----KCSRLNTFESRGCPLITSLG---LAAIAVGCKQLIKLDIKWCHNINDVGMLPLAH---FSQNLRQINLSYTSVTD 573 (664)
Q Consensus 505 -----~~~~L~~L~l~~~~~l~~~~---~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~---~~~~L~~L~l~~n~l~~ 573 (664)
..++|++|++++| .+++.+ +...+..+++|++|++++| .+++.+...+.. ..++|+.|+|++|.|++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 4689999999999 677655 3445578899999999999 678877665543 36799999999999999
Q ss_pred hHHHHhhC-CcccccceeeccCCCCHHHHHHHH
Q 006015 574 VGLLSLAS-ISCLQNMTILHLKGLSLNGLAAAL 605 (664)
Q Consensus 574 ~~~~~l~~-~~~L~~L~~l~l~~n~~~~~~~~~ 605 (664)
.+...+.. +...++|+.+++++|.++......
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 88776643 555677889999999997765443
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=3.8e-14 Score=127.58 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=119.9
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+++|++|+++++.+.+. + .+..+++|+.|++++| .+++. ..+. .+++|++|++++|. +++.. ...+..+++
T Consensus 42 ~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n-~~~~~--~~l~-~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~ 113 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNI-HATNY--NPIS-GLSNLERLRIMGKD-VTSDK-IPNLSGLTS 113 (197)
T ss_dssp HHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESC-CCSCC--GGGT-TCTTCCEEEEECTT-CBGGG-SCCCTTCTT
T ss_pred hcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCC-CCCcc--hhhh-cCCCCCEEEeECCc-cCccc-ChhhcCCCC
Confidence 567899999999988853 2 6888999999999999 77764 3444 78999999999987 65322 233567899
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCe
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQ 563 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 563 (664)
|++|++++|. +++..+..+..+++|++|++++|..+++ ++ .+.++++|++|++++| .+++.. ....+++|+.
T Consensus 114 L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n-~i~~~~---~l~~l~~L~~ 185 (197)
T 4ezg_A 114 LTLLDISHSA-HDDSILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFD-GVHDYR---GIEDFPKLNQ 185 (197)
T ss_dssp CCEEECCSSB-CBGGGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTB-CCCCCT---TGGGCSSCCE
T ss_pred CCEEEecCCc-cCcHhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCC-CCcChH---HhccCCCCCE
Confidence 9999999998 8887888899999999999999964666 33 5778999999999999 455533 3344799999
Q ss_pred eeeccCCCCh
Q 006015 564 INLSYTSVTD 573 (664)
Q Consensus 564 L~l~~n~l~~ 573 (664)
|++++|++.+
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 9999999764
No 98
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.44 E-value=3.1e-15 Score=139.65 Aligned_cols=197 Identities=13% Similarity=0.096 Sum_probs=125.4
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCC-CCCCChHHHHHHHhcCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYR-CVGITDSGILTIACGCPDL 484 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L 484 (664)
+++++|+++++.+.......+..+++|+.|++++|..++......+. .+++|++|++++ |. ++. .....+.++++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~-~l~~L~~L~l~~~n~-l~~-i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY-NLSKVTHIEIRNTRN-LTY-IDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEE-SCTTCCEEEEEEETT-CCE-ECTTSEECCTTC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcC-CCcCCcEEECCCCCC-eeE-cCHHHhCCCCCC
Confidence 36788888888877766667777888888888887226654333333 677888888887 44 542 112334567788
Q ss_pred CEEeccCCCCCCHHHHHhhhcCCCCC---EEEccCCCCCCHHHHHHHHhcCCcCc-EEeccCccccChhhHHHHHhcCcc
Q 006015 485 EMINIAYLKDITDSSLLSLSKCSRLN---TFESRGCPLITSLGLAAIAVGCKQLI-KLDIKWCHNINDVGMLPLAHFSQN 560 (664)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~---~L~l~~~~~l~~~~~~~~~~~~~~L~-~L~l~~~~~i~~~~~~~~~~~~~~ 560 (664)
++|++++|. +++.. .+..+++|+ .|++++|+.++.. .+..+.++++|+ .|++++| .++...... ...++
T Consensus 108 ~~L~l~~n~-l~~lp--~~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~--~~~~~ 180 (239)
T 2xwt_C 108 KFLGIFNTG-LKMFP--DLTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYNN-GFTSVQGYA--FNGTK 180 (239)
T ss_dssp CEEEEEEEC-CCSCC--CCTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCSC-CCCEECTTT--TTTCE
T ss_pred CEEeCCCCC-Ccccc--ccccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCCC-CCcccCHhh--cCCCC
Confidence 888888876 65422 266666776 8888887555442 223456777888 8888877 333322111 11367
Q ss_pred cCeeeeccCC-CChhHHHHhhCCccc-ccceeeccCCCCHHHHHHHHHhCCcccceeee
Q 006015 561 LRQINLSYTS-VTDVGLLSLASISCL-QNMTILHLKGLSLNGLAAALLACGGITKVKLQ 617 (664)
Q Consensus 561 L~~L~l~~n~-l~~~~~~~l~~~~~L-~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~ 617 (664)
|+.|++++|+ ++...+.. +..+ ++|+.+++++|.++.+|.. .+++|+.|+++
T Consensus 181 L~~L~L~~n~~l~~i~~~~---~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~ 234 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDA---FGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIAR 234 (239)
T ss_dssp EEEEECTTCTTCCEECTTT---TTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECT
T ss_pred CCEEEcCCCCCcccCCHHH---hhccccCCcEEECCCCccccCChh--HhccCceeecc
Confidence 8888888884 77644433 3444 5566777888887776654 46777777766
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.43 E-value=3.9e-14 Score=149.22 Aligned_cols=149 Identities=24% Similarity=0.229 Sum_probs=65.7
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+++|+.|++++|.+.+..+ +..+++|+.|+|++| .+++. ..+. .+++|+.|++++|. +++ + ..+..+++
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l--~~l~-~l~~L~~L~Ls~N~-l~~--l-~~l~~l~~ 132 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDL--SSLK-DLKKLKSLSLEHNG-ISD--I-NGLVHLPQ 132 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCC--TTST-TCTTCCEEECTTSC-CCC--C-GGGGGCTT
T ss_pred cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCC--hhhc-cCCCCCEEEecCCC-CCC--C-ccccCCCc
Confidence 34444444444444443222 444444444444444 44331 1222 34455555555444 321 1 11334455
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCe
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQ 563 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 563 (664)
|+.|+|++|. +++. ..+..+++|+.|+|++| .+++. .. +..+++|+.|++++| .+++. +....+++|+.
T Consensus 133 L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N-~l~~~--~~-l~~l~~L~~L~Ls~N-~i~~l---~~l~~l~~L~~ 201 (605)
T 1m9s_A 133 LESLYLGNNK-ITDI--TVLSRLTKLDTLSLEDN-QISDI--VP-LAGLTKLQNLYLSKN-HISDL---RALAGLKNLDV 201 (605)
T ss_dssp CSEEECCSSC-CCCC--GGGGSCTTCSEEECCSS-CCCCC--GG-GTTCTTCCEEECCSS-CCCBC---GGGTTCTTCSE
T ss_pred cCEEECCCCc-cCCc--hhhcccCCCCEEECcCC-cCCCc--hh-hccCCCCCEEECcCC-CCCCC---hHHccCCCCCE
Confidence 5555555554 4432 34445555555555555 33331 11 445555555555555 23322 11223555555
Q ss_pred eeeccCCCCh
Q 006015 564 INLSYTSVTD 573 (664)
Q Consensus 564 L~l~~n~l~~ 573 (664)
|+|++|++++
T Consensus 202 L~L~~N~l~~ 211 (605)
T 1m9s_A 202 LELFSQECLN 211 (605)
T ss_dssp EECCSEEEEC
T ss_pred EEccCCcCcC
Confidence 5555555544
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.41 E-value=2.1e-14 Score=134.91 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=27.5
Q ss_pred CCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCC
Q 006015 407 FLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCV 467 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 467 (664)
+++.|+++++.+....+..+.++++|+.|++++| .++......+. .+++|++|++++|.
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFD-DLTELGTLGLANNQ 94 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT-TCTTCCEEECTTSC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhc-cCCcCCEEECCCCc
Confidence 4555555555555444444555555555555555 44432222222 34444444444443
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.40 E-value=4.8e-14 Score=132.46 Aligned_cols=155 Identities=13% Similarity=0.044 Sum_probs=75.9
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCc
Q 006015 380 TGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLK 459 (664)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 459 (664)
++++.|++++|... ......+. .+++|++|++++|.+....+..+..+++|+.|++++| .++......+. .+++|+
T Consensus 35 ~~l~~L~L~~n~l~-~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQSTGLA-TLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFD-HLTQLD 110 (251)
T ss_dssp TTCCEEECTTSCCC-CCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTT-TCTTCC
T ss_pred CCCCEEEccCCCcC-ccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-cccccChhHhc-ccCCCC
Confidence 45666666665432 11111122 5666666666666666655555666666666666666 55543222222 455666
Q ss_pred EEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEe
Q 006015 460 ELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLD 539 (664)
Q Consensus 460 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 539 (664)
+|++++|. ++. .....+..+++|++|++++|. ++......+..+++|+.|++++| .++.. .+..+..+++|+.|+
T Consensus 111 ~L~L~~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 111 KLYLGGNQ-LKS-LPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTN-QLQSV-PHGAFDRLGKLQTIT 185 (251)
T ss_dssp EEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEE
T ss_pred EEEcCCCc-CCC-cChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCC-cCCcc-CHHHHhCCCCCCEEE
Confidence 66665554 331 111122344555555555554 44444444445555555555555 23221 112333444444444
Q ss_pred ccCc
Q 006015 540 IKWC 543 (664)
Q Consensus 540 l~~~ 543 (664)
+++|
T Consensus 186 l~~N 189 (251)
T 3m19_A 186 LFGN 189 (251)
T ss_dssp CCSC
T ss_pred eeCC
Confidence 4444
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=1.8e-14 Score=131.21 Aligned_cols=163 Identities=12% Similarity=-0.015 Sum_probs=114.8
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
+++++|+++++.+.......+..+++|+.|++++| .++......+. .+++|++|++++|. ++. .....+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFN-KLTSLTYLNLSTNQ-LQS-LPNGVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSSC-CCC-CCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcC-CCCCcCEEECCCCc-CCc-cCHhHhcCccCCC
Confidence 46777777777777655556677778888888877 77654322233 67788888888776 442 1223345678888
Q ss_pred EEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeee
Q 006015 486 MINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQIN 565 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~ 565 (664)
+|++++|. ++......+..+++|+.|++++| .++.. .+..+..+++|++|++++|+.. ..+++|+.|+
T Consensus 104 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~~~---------~~~~~l~~L~ 171 (208)
T 2o6s_A 104 ELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQN-QLKSV-PDGVFDRLTSLQYIWLHDNPWD---------CTCPGIRYLS 171 (208)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSCCBC---------CCTTTTHHHH
T ss_pred EEEcCCCc-CcccCHhHhccCCcCCEEECCCC-cccee-CHHHhccCCCccEEEecCCCee---------cCCCCHHHHH
Confidence 88888887 77666666778889999999888 45442 2334667889999999998542 2367899999
Q ss_pred eccCCCChhHHHHhhCCcc
Q 006015 566 LSYTSVTDVGLLSLASISC 584 (664)
Q Consensus 566 l~~n~l~~~~~~~l~~~~~ 584 (664)
++.|++++.+|..++.++.
T Consensus 172 ~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 172 EWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHHCTTTBBCTTSSBCT
T ss_pred HHHHhCCceeeccCccccC
Confidence 9999999888777665544
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=5e-14 Score=146.56 Aligned_cols=190 Identities=11% Similarity=0.098 Sum_probs=88.6
Q ss_pred CCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCE
Q 006015 407 FLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEM 486 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (664)
+++.|+++++.+.+ .+..+ .++|+.|++++| .++... ..+++|+.|++++|. ++. ++. +. .+|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N~-l~~--ip~-l~--~~L~~ 124 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQN-ALISLP-----ELPASLEYLDACDNR-LST--LPE-LP--ASLKH 124 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSC--CCC-CC--TTCCE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCC-CCcccc-----cccCCCCEEEccCCC-CCC--cch-hh--cCCCE
Confidence 45555555544443 22212 244555555555 444321 234555555555554 331 222 11 15555
Q ss_pred EeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeee
Q 006015 487 INIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINL 566 (664)
Q Consensus 487 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l 566 (664)
|++++|. +++... .+++|+.|++++| .++. ++. .+++|++|++++|+ ++.... ..++|+.|++
T Consensus 125 L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~-L~~lp~-----l~~~L~~L~L 187 (571)
T 3cvr_A 125 LDVDNNQ-LTMLPE----LPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNNQ-LTFLPE-----LPESLEALDV 187 (571)
T ss_dssp EECCSSC-CSCCCC----CCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEEC
T ss_pred EECCCCc-CCCCCC----cCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCCC-CCCcch-----hhCCCCEEEC
Confidence 5555554 443211 3455566666555 3333 222 34556666666662 222111 1156666666
Q ss_pred ccCCCChhHHHHhhC--CcccccceeeccCCCCHHHHHHHHHhCCcccceeee-hhhcccCChhHHH
Q 006015 567 SYTSVTDVGLLSLAS--ISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQLLPQPLID 630 (664)
Q Consensus 567 ~~n~l~~~~~~~l~~--~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~~~~ 630 (664)
++|+|+. +|. +.. ......|+.+++++|.++.+|..++.+++|+.|+|+ |.+.+.+|..+..
T Consensus 188 s~N~L~~-lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 188 STNLLES-LPA-VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSCCSS-CCC-CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred cCCCCCc-hhh-HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 6666553 221 211 000011156666666666666555556666666666 6666555555433
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=3.3e-13 Score=142.23 Aligned_cols=172 Identities=17% Similarity=0.167 Sum_probs=127.4
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+++|+.|+++++.+... ..+..+++|+.|+|++| .+++... +. .+++|+.|++++|. ++. ++ .+..+++
T Consensus 41 ~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N-~l~~~~~--l~-~l~~L~~L~Ls~N~-l~~--l~-~l~~l~~ 110 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN-KLTDIKP--LT-NLKNLGWLFLDENK-IKD--LS-SLKDLKK 110 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTS-CCCCCGG--GG-GCTTCCEEECCSSC-CCC--CT-TSTTCTT
T ss_pred cCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCC-CCCCChh--hc-cCCCCCEEECcCCC-CCC--Ch-hhccCCC
Confidence 567888888888877663 35778899999999999 7876443 33 78999999999887 543 22 3567889
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCe
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQ 563 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 563 (664)
|+.|++++|. +++. ..+..+++|+.|+|++| .++. + ..+..+++|+.|++++|. +.... + ...+++|+.
T Consensus 111 L~~L~Ls~N~-l~~l--~~l~~l~~L~~L~Ls~N-~l~~--l-~~l~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~ 179 (605)
T 1m9s_A 111 LKSLSLEHNG-ISDI--NGLVHLPQLESLYLGNN-KITD--I-TVLSRLTKLDTLSLEDNQ-ISDIV--P-LAGLTKLQN 179 (605)
T ss_dssp CCEEECTTSC-CCCC--GGGGGCTTCSEEECCSS-CCCC--C-GGGGSCTTCSEEECCSSC-CCCCG--G-GTTCTTCCE
T ss_pred CCEEEecCCC-CCCC--ccccCCCccCEEECCCC-ccCC--c-hhhcccCCCCEEECcCCc-CCCch--h-hccCCCCCE
Confidence 9999999987 7653 45778899999999998 5555 2 456788899999999884 44322 2 445788999
Q ss_pred eeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHH
Q 006015 564 INLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGL 601 (664)
Q Consensus 564 L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~ 601 (664)
|+|++|.+++. ..+..+++|+.+++++|.+...
T Consensus 180 L~Ls~N~i~~l-----~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 180 LYLSKNHISDL-----RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EECCSSCCCBC-----GGGTTCTTCSEEECCSEEEECC
T ss_pred EECcCCCCCCC-----hHHccCCCCCEEEccCCcCcCC
Confidence 99999988873 2355666777888888877654
No 105
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.34 E-value=1.6e-12 Score=110.70 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=50.4
Q ss_pred CccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhc---CCCCCEEeccCCCCCCHHHHHhhhcCC
Q 006015 431 KLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACG---CPDLEMINIAYLKDITDSSLLSLSKCS 507 (664)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~l~~~~ 507 (664)
+|+.|++++| .+++.++..+. .|++|++|++++|..+||.++..+... +++|++|+|++|.++++.....+.+++
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCC-CccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4555555555 45555555553 555555555555555555555555432 345555555555555555555555555
Q ss_pred CCCEEEccCCCCCCHH
Q 006015 508 RLNTFESRGCPLITSL 523 (664)
Q Consensus 508 ~L~~L~l~~~~~l~~~ 523 (664)
+|++|++++|+.+++.
T Consensus 140 ~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TCCEEEEESCTTCCCH
T ss_pred CCCEEECCCCCCCCch
Confidence 5555555555555543
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=1.1e-13 Score=130.52 Aligned_cols=168 Identities=16% Similarity=0.166 Sum_probs=109.8
Q ss_pred CCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCE
Q 006015 407 FLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEM 486 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (664)
++..++++++.+.+.. .+..+++|+.|++++| .+++.. .+. .+++|++|++++|. +++. .. +..+++|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n-~i~~l~--~l~-~l~~L~~L~L~~N~-i~~~--~~-l~~l~~L~~ 89 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNS-NIQSLA--GMQ-FFTNLKELHLSHNQ-ISDL--SP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTS-CCCCCT--TGG-GCTTCCEEECCSSC-CCCC--GG-GTTCSSCCE
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCC-Ccccch--HHh-hCCCCCEEECCCCc-cCCC--hh-hccCCCCCE
Confidence 3445556666665533 4566788888888888 776642 333 67888888888876 5432 22 567788888
Q ss_pred EeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeee
Q 006015 487 INIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINL 566 (664)
Q Consensus 487 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l 566 (664)
|++++|. +++.. .+.. ++|+.|++++| .++. ++ .+..+++|+.|++++| .+++.. ....+++|+.|++
T Consensus 90 L~L~~N~-l~~l~--~~~~-~~L~~L~L~~N-~l~~--~~-~l~~l~~L~~L~Ls~N-~i~~~~---~l~~l~~L~~L~L 157 (263)
T 1xeu_A 90 LSVNRNR-LKNLN--GIPS-ACLSRLFLDNN-ELRD--TD-SLIHLKNLEILSIRNN-KLKSIV---MLGFLSKLEVLDL 157 (263)
T ss_dssp EECCSSC-CSCCT--TCCC-SSCCEEECCSS-CCSB--SG-GGTTCTTCCEEECTTS-CCCBCG---GGGGCTTCCEEEC
T ss_pred EECCCCc-cCCcC--cccc-CcccEEEccCC-ccCC--Ch-hhcCcccccEEECCCC-cCCCCh---HHccCCCCCEEEC
Confidence 8888886 65432 2333 77888888888 5554 22 3567788888888887 444432 2334678888888
Q ss_pred ccCCCChhHHHHhhCCcccccceeeccCCCCHHHH
Q 006015 567 SYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGL 601 (664)
Q Consensus 567 ~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~ 601 (664)
++|++++. ..+..+++|+.+++++|.+...
T Consensus 158 ~~N~i~~~-----~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 158 HGNEITNT-----GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TTSCCCBC-----TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCcCcch-----HHhccCCCCCEEeCCCCcccCC
Confidence 88887764 3355566666777777766544
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.28 E-value=6.4e-13 Score=125.27 Aligned_cols=149 Identities=16% Similarity=0.136 Sum_probs=90.9
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+++|++|+++++.+.... .+..+++|+.|++++| .+++... + ..+++|++|++++|. +++ ++.. .. ++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N-~i~~~~~--l-~~l~~L~~L~L~~N~-l~~--l~~~-~~-~~ 107 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHN-QISDLSP--L-KDLTKLEELSVNRNR-LKN--LNGI-PS-AC 107 (263)
T ss_dssp HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--G-TTCSSCCEEECCSSC-CSC--CTTC-CC-SS
T ss_pred hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCC-ccCCChh--h-ccCCCCCEEECCCCc-cCC--cCcc-cc-Cc
Confidence 4456666666665555421 4555666666666666 5555332 2 256666666666665 332 1111 11 67
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCe
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQ 563 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 563 (664)
|++|++++|. +++. ..+..+++|+.|++++| .+++ ++ .+..+++|+.|++++| .+++. .....+++|+.
T Consensus 108 L~~L~L~~N~-l~~~--~~l~~l~~L~~L~Ls~N-~i~~--~~-~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~ 176 (263)
T 1xeu_A 108 LSRLFLDNNE-LRDT--DSLIHLKNLEILSIRNN-KLKS--IV-MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNW 176 (263)
T ss_dssp CCEEECCSSC-CSBS--GGGTTCTTCCEEECTTS-CCCB--CG-GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCE
T ss_pred ccEEEccCCc-cCCC--hhhcCcccccEEECCCC-cCCC--Ch-HHccCCCCCEEECCCC-cCcch---HHhccCCCCCE
Confidence 7777777776 6643 34667777888888777 4555 22 4567788888888888 44443 22334788888
Q ss_pred eeeccCCCChh
Q 006015 564 INLSYTSVTDV 574 (664)
Q Consensus 564 L~l~~n~l~~~ 574 (664)
|++++|+++..
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 88888887654
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=1.3e-12 Score=111.69 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=24.2
Q ss_pred cCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCc
Q 006015 480 GCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (664)
.+++|++|++++|. +++. ..+..+++|++|++++| .++.. ++..+..+++|++|++++|
T Consensus 40 ~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N 98 (149)
T 2je0_A 40 EFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGN 98 (149)
T ss_dssp TCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTS
T ss_pred hcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCC
Confidence 34444444444443 3322 33334444444444444 22221 2333333444444444444
No 109
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.26 E-value=7.6e-12 Score=106.59 Aligned_cols=104 Identities=17% Similarity=0.316 Sum_probs=86.6
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhC---CCCCcEEEcCCCCCCChHHHHHHHhcCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMC---CSKLKELDLYRCVGITDSGILTIACGCP 482 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (664)
..|++|++++|.+++.+...+..+++|+.|+|++|..++|.++..+... +++|++|++++|..+||.++..+ ..|+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 4689999999999999999898999999999999988999999998842 46899999999999999999876 4689
Q ss_pred CCCEEeccCCCCCCHHHH--Hhhh-cCCCCC
Q 006015 483 DLEMINIAYLKDITDSSL--LSLS-KCSRLN 510 (664)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~--~~l~-~~~~L~ 510 (664)
+|++|++++|+++++... ..+. .+|+++
T Consensus 140 ~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 999999999998987653 3332 466654
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.24 E-value=5.1e-13 Score=121.54 Aligned_cols=135 Identities=13% Similarity=0.094 Sum_probs=81.5
Q ss_pred hcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcC
Q 006015 479 CGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFS 558 (664)
Q Consensus 479 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~ 558 (664)
..+++|++|++++|. ++......+..+++|++|++++| .++.. .+..+.++++|++|++++|. ++.... .....+
T Consensus 49 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l 123 (208)
T 2o6s_A 49 DELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTN-QLQSL-PNGVFDKLTQLKELALNTNQ-LQSLPD-GVFDKL 123 (208)
T ss_dssp TTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTC
T ss_pred cccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCC-cCCcc-CHhHhcCccCCCEEEcCCCc-CcccCH-hHhccC
Confidence 344555555555554 54444444555666666666666 33321 22234566667777776663 332111 012236
Q ss_pred cccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee-hhhcccCChh
Q 006015 559 QNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQLLPQP 627 (664)
Q Consensus 559 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p~~ 627 (664)
++|+.|++++|++++..+.. +..+++|+.+++++|.+. ..+++|+.++++ |.+.+.+|..
T Consensus 124 ~~L~~L~l~~N~l~~~~~~~---~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 124 TQLKDLRLYQNQLKSVPDGV---FDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp TTCCEEECCSSCCSCCCTTT---TTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred CcCCEEECCCCccceeCHHH---hccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCceeecc
Confidence 78888888888877644322 455666678888888653 347899999999 9999999875
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=4.2e-13 Score=117.36 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=15.3
Q ss_pred cccceeeccCCCCHHHHHH----HHHhCCcccceeee
Q 006015 585 LQNMTILHLKGLSLNGLAA----ALLACGGITKVKLQ 617 (664)
Q Consensus 585 L~~L~~l~l~~n~~~~~~~----~~~~~~~L~~l~l~ 617 (664)
+++|+.+++++|.++.+++ .+..+++|+.|+++
T Consensus 119 l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 119 LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 3334444444444444433 22235555555555
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=1.9e-13 Score=143.22 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=84.7
Q ss_pred CCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCccc
Q 006015 482 PDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNL 561 (664)
Q Consensus 482 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L 561 (664)
..|+.|++++|. +++.. .+..+++|+.|++++| .++. +|..+.++++|+.|++++|+ ++.. |....+++|
T Consensus 441 ~~L~~L~Ls~n~-l~~lp--~~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N~-l~~l---p~l~~l~~L 510 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTVLC--HLEQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNA-LENV---DGVANLPRL 510 (567)
T ss_dssp TTCSEEECTTSC-CSSCC--CGGGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSC-CCCC---GGGTTCSSC
T ss_pred cCceEEEecCCC-CCCCc--CccccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCCC-CCCC---cccCCCCCC
Confidence 358888888886 76532 3777888888888888 5553 56677788888888888883 4432 333447888
Q ss_pred CeeeeccCCCChhH-HHHhhCCcccccceeeccCCCCHHHHHHH---HHh-CCcccceee
Q 006015 562 RQINLSYTSVTDVG-LLSLASISCLQNMTILHLKGLSLNGLAAA---LLA-CGGITKVKL 616 (664)
Q Consensus 562 ~~L~l~~n~l~~~~-~~~l~~~~~L~~L~~l~l~~n~~~~~~~~---~~~-~~~L~~l~l 616 (664)
+.|++++|++++.. |..++ .+++|+.+++++|.++++++. +.. +|+|+.|++
T Consensus 511 ~~L~Ls~N~l~~~~~p~~l~---~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 511 QELLLCNNRLQQSAAIQPLV---SCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECCSSCCCSSSTTGGGG---GCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cEEECCCCCCCCCCCcHHHh---cCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888888887754 55544 445555788888888776542 233 788887764
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.20 E-value=9.2e-13 Score=130.91 Aligned_cols=180 Identities=15% Similarity=0.081 Sum_probs=118.6
Q ss_pred CEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEe
Q 006015 409 EELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMIN 488 (664)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 488 (664)
+.++++++.+.. .+..+ .+.++.|++++| .++......+...+++|+.|++++|. ++. .....+..+++|++|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~-i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNF-ISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSS-CCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCE-ECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCc-cCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCc-cChhhccCCCCCCEEE
Confidence 577888777665 23222 346888999998 88775443333367888888888887 542 1123456778888888
Q ss_pred ccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHH--hcCcccCeeee
Q 006015 489 IAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLA--HFSQNLRQINL 566 (664)
Q Consensus 489 l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~--~~~~~L~~L~l 566 (664)
+++|. ++......+..+++|+.|+|++| .++.. .+..+.++++|+.|++++| .++......+. ..+++|+.|+|
T Consensus 95 Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~-~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 95 LSSNH-LHTLDEFLFSDLQALEVLLLYNN-HIVVV-DRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEEC
T ss_pred CCCCc-CCcCCHHHhCCCcCCCEEECCCC-cccEE-CHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEEC
Confidence 88887 77766667788888888888888 45442 2445667888888888888 44432211110 23678888888
Q ss_pred ccCCCChhHHHHhhCCcccccceeeccCCCCHH
Q 006015 567 SYTSVTDVGLLSLASISCLQNMTILHLKGLSLN 599 (664)
Q Consensus 567 ~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~ 599 (664)
++|+++...+..+..++.+ .++.+++.+|.+.
T Consensus 171 ~~N~l~~l~~~~~~~l~~~-~l~~l~l~~N~~~ 202 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAW-VKNGLYLHNNPLE 202 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHH-HHTTEECCSSCEE
T ss_pred CCCCCCccCHHHhhhccHh-hcceEEecCCCcc
Confidence 8888877666665555542 1345667777764
No 114
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=1.3e-11 Score=105.34 Aligned_cols=130 Identities=24% Similarity=0.238 Sum_probs=86.9
Q ss_pred CCCCCEEEccCCCCC-hhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 405 CRFLEELDLTDNEID-DEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+++++|++++|.+. +..+..+..+++|+.|++++| .+++. ..+. .+++|++|++++|. ++. .++..+..+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~-~l~~L~~L~Ls~n~-i~~-~~~~~~~~l~~ 89 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLP-KLNKLKKLELSDNR-VSG-GLEVLAEKCPN 89 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCC-CCTTCCEEECCSSC-CCS-CTHHHHHHCTT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhh-cCCCCCEEECCCCc-ccc-hHHHHhhhCCC
Confidence 356777777777766 344555566777777777777 67664 2233 67778888888776 542 25556666788
Q ss_pred CCEEeccCCCCCCHH-HHHhhhcCCCCCEEEccCCCCCCHHHH--HHHHhcCCcCcEEeccC
Q 006015 484 LEMINIAYLKDITDS-SLLSLSKCSRLNTFESRGCPLITSLGL--AAIAVGCKQLIKLDIKW 542 (664)
Q Consensus 484 L~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~ 542 (664)
|++|++++|. +++. .+..+..+++|++|++++| .++.... ...+..+++|+.|++++
T Consensus 90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888877 7664 3466777888888888888 4444211 24677788888888763
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.19 E-value=5.4e-12 Score=125.36 Aligned_cols=156 Identities=14% Similarity=0.085 Sum_probs=68.1
Q ss_pred CCEEEccCCCCChhhHHhhc-cCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCE
Q 006015 408 LEELDLTDNEIDDEGLKSIS-RCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEM 486 (664)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (664)
++.|++++|.+.......+. .+++|+.|++++| .++......+. .+++|++|++++|. ++. .....+..+++|++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~-~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFV-PVPNLRYLDLSSNH-LHT-LDEFLFSDLQALEV 116 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSSC-CCE-ECTTTTTTCTTCCE
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhcc-CCCCCCEEECCCCc-CCc-CCHHHhCCCcCCCE
Confidence 44455554444444334443 4455555555555 44443222222 44555555555544 321 11122334455555
Q ss_pred EeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHH---hcCCcCcEEeccCccccChhhHHHHHhcCcc--c
Q 006015 487 INIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIA---VGCKQLIKLDIKWCHNINDVGMLPLAHFSQN--L 561 (664)
Q Consensus 487 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~--L 561 (664)
|++++|. ++...+..+..+++|+.|+|++| .++.. ....+ ..+++|+.|++++| .++......+.. +++ +
T Consensus 117 L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~-l~~~~l 191 (361)
T 2xot_A 117 LLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRF-PVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQK-LPAWVK 191 (361)
T ss_dssp EECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCSC-CGGGTC----CTTCCEEECCSS-CCCCCCHHHHHH-SCHHHH
T ss_pred EECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCee-CHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhh-ccHhhc
Confidence 5555554 54444444555555555555555 33321 01111 24555555555555 333322222211 233 3
Q ss_pred CeeeeccCCCC
Q 006015 562 RQINLSYTSVT 572 (664)
Q Consensus 562 ~~L~l~~n~l~ 572 (664)
+.|++++|++.
T Consensus 192 ~~l~l~~N~~~ 202 (361)
T 2xot_A 192 NGLYLHNNPLE 202 (361)
T ss_dssp TTEECCSSCEE
T ss_pred ceEEecCCCcc
Confidence 55566655543
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.19 E-value=5e-12 Score=110.45 Aligned_cols=131 Identities=23% Similarity=0.175 Sum_probs=82.7
Q ss_pred CCCCCEEEccCCCCC-hhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 405 CRFLEELDLTDNEID-DEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.++|++|++++|.+. ...+..+..+++|+.|++++| .++.. ..+. .+++|++|++++|. ++.. ++..+..+++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~--~~~~-~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~ 96 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV--SNLP-KLPKLKKLELSENR-IFGG-LDMLAEKLPN 96 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC--SSCC-CCSSCCEEEEESCC-CCSC-CCHHHHHCTT
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh--hhhc-cCCCCCEEECcCCc-CchH-HHHHHhhCCC
Confidence 366777777777776 334455566778888888887 67664 2233 57777788887776 4421 4455556777
Q ss_pred CCEEeccCCCCCCHHH-HHhhhcCCCCCEEEccCCCCCCHHH--HHHHHhcCCcCcEEeccCc
Q 006015 484 LEMINIAYLKDITDSS-LLSLSKCSRLNTFESRGCPLITSLG--LAAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~l~~~ 543 (664)
|++|++++|. +++.. +..+..+++|+.|++++| .++... ....+..+++|++|++++|
T Consensus 97 L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 97 LTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 7777777776 66542 356666777777777777 333211 0135556666666666666
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=4.8e-12 Score=131.71 Aligned_cols=153 Identities=17% Similarity=0.047 Sum_probs=86.2
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
.+++|++|++++|.++. .+. +.. +|+.|++++| .++.... .+++|+.|++++|. ++. ++. .+++
T Consensus 98 ~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N-~l~~lp~-----~l~~L~~L~Ls~N~-l~~--lp~---~l~~ 161 (571)
T 3cvr_A 98 LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNN-QLTMLPE-----LPALLEYINADNNQ-LTM--LPE---LPTS 161 (571)
T ss_dssp CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSC--CCC---CCTT
T ss_pred ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCC-cCCCCCC-----cCccccEEeCCCCc-cCc--CCC---cCCC
Confidence 35566666666666655 222 332 6677777766 6555211 45667777777665 432 222 4566
Q ss_pred CCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhc-----CCcCcEEeccCccccChhhHHHHHhcC
Q 006015 484 LEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVG-----CKQLIKLDIKWCHNINDVGMLPLAHFS 558 (664)
Q Consensus 484 L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~-----~~~L~~L~l~~~~~i~~~~~~~~~~~~ 558 (664)
|++|++++|. +++... +. ++|+.|++++| .++. ++. +.. .+.|+.|++++| .++.. ......+
T Consensus 162 L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N-~L~~--lp~-~~~~L~~~~~~L~~L~Ls~N-~l~~l--p~~l~~l 229 (571)
T 3cvr_A 162 LEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTN-LLES--LPA-VPVRNHHSEETEIFFRCREN-RITHI--PENILSL 229 (571)
T ss_dssp CCEEECCSSC-CSCCCC--CC--TTCCEEECCSS-CCSS--CCC-CC--------CCEEEECCSS-CCCCC--CGGGGGS
T ss_pred cCEEECCCCC-CCCcch--hh--CCCCEEECcCC-CCCc--hhh-HHHhhhcccccceEEecCCC-cceec--CHHHhcC
Confidence 7777777776 554222 33 67777777777 4443 332 211 122377888877 33322 1112236
Q ss_pred cccCeeeeccCCCChhHHHHhhCCcc
Q 006015 559 QNLRQINLSYTSVTDVGLLSLASISC 584 (664)
Q Consensus 559 ~~L~~L~l~~n~l~~~~~~~l~~~~~ 584 (664)
++|+.|++++|++++..|..+..+..
T Consensus 230 ~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 230 DPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 77888888888888777777665443
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.18 E-value=5e-12 Score=115.63 Aligned_cols=135 Identities=16% Similarity=0.102 Sum_probs=81.5
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
++++.|+++++.+....+..+..+++|+.|++++| .++......+. .+++|++|++++|. ++. .....+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~-~l~~L~~L~Ls~N~-l~~-l~~~~f~~l~~L~ 107 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQ-GLRSLNSLVLYGNK-ITE-LPKSLFEGLFSLQ 107 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTT-TCSSCCEEECCSSC-CCC-CCTTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhh-CCcCCCEEECCCCc-CCc-cCHhHccCCCCCC
Confidence 45666666666666655556666667777777776 66654333443 56667777776665 431 1122344567777
Q ss_pred EEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccC
Q 006015 486 MINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNIN 547 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~ 547 (664)
+|++++|. ++...+..+..+++|+.|++++| .++.. .+..+..+++|+.|++++|+...
T Consensus 108 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 108 LLLLNANK-INCLRVDAFQDLHNLNLLSLYDN-KLQTI-AKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCC-CCEeCHHHcCCCCCCCEEECCCC-cCCEE-CHHHHhCCCCCCEEEeCCCCcCC
Confidence 77777776 66666666667777777777777 34331 22345556677777777765433
No 119
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.17 E-value=3e-13 Score=133.91 Aligned_cols=205 Identities=11% Similarity=-0.001 Sum_probs=103.0
Q ss_pred CCCcEEecccCcCCChHHHHHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcC
Q 006015 125 KNLKEIDISNAVSLKDAGAAALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEI 204 (664)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (664)
+++++|++++| .+.......|..+++|++|++++|...+... ...+.++++++++.+.++..+..++...+ ..+++|
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~~~~f-~~l~~L 106 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNL 106 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEECTTSB-CCCTTC
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccCchhh-hhcccc
Confidence 45666777666 4554444456667777777777765322211 12223455555544333224444433332 366777
Q ss_pred cEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcEee
Q 006015 205 RSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQLT 284 (664)
Q Consensus 205 ~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (664)
++|++++|.+....+..+....++..|++.++..+...+...+......++.|++++|.... ++.......+|+.+.
T Consensus 107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~---i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE---IHNSAFNGTQLDELN 183 (350)
T ss_dssp CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE---ECTTSSTTEEEEEEE
T ss_pred ccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC---CChhhccccchhHHh
Confidence 77777777666544444455556666666554443332222223212356666776665322 111122234566666
Q ss_pred cCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCC
Q 006015 285 LAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCD 339 (664)
Q Consensus 285 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (664)
+.++..+.......|..+++|+.|++++|.++..... .+.+|+.|.+.++.
T Consensus 184 l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~----~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY----GLENLKKLRARSTY 234 (350)
T ss_dssp CTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS----SCTTCCEEECTTCT
T ss_pred hccCCcccCCCHHHhccCcccchhhcCCCCcCccChh----hhccchHhhhccCC
Confidence 6544344433334456666666666666655432111 23455555554443
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=1.9e-13 Score=143.13 Aligned_cols=194 Identities=10% Similarity=0.079 Sum_probs=126.4
Q ss_pred hCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCC
Q 006015 352 KHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSK 431 (664)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (664)
.+++|+.|+++++.. + .++..+..+++|+.|+++++... .....+. ..+......+..++.+++
T Consensus 347 ~~~~L~~L~Ls~n~L-~--~Lp~~i~~l~~L~~L~l~~n~~l--~~l~~ll-----------~~~~~~~~~~~~l~~l~~ 410 (567)
T 1dce_A 347 TDEQLFRCELSVEKS-T--VLQSELESCKELQELEPENKWCL--LTIILLM-----------RALDPLLYEKETLQYFST 410 (567)
T ss_dssp TTTTSSSCCCCHHHH-H--HHHHHHHHHHHHHHHCTTCHHHH--HHHHHHH-----------HHHCTGGGHHHHHHHHHH
T ss_pred cCccceeccCChhhH-H--hhHHHHHHHHHHHHhccccchhh--hhHHHHH-----------HhcccccCCHHHHHHHHh
Confidence 466777777776652 2 35555666777777777543210 0011110 001123345566677777
Q ss_pred ccEEc-ccCCCCCChH--------hHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHh
Q 006015 432 LSVLK-LGICLNITGE--------GLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLS 502 (664)
Q Consensus 432 L~~L~-l~~~~~l~~~--------~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 502 (664)
|+.|+ ++.+ .+.+. .+..+. ...|+.|++++|. ++. ++. +..+++|+.|++++|. ++ ..+..
T Consensus 411 L~~L~~l~~n-~~~~L~~l~l~~n~i~~l~--~~~L~~L~Ls~n~-l~~--lp~-~~~l~~L~~L~Ls~N~-l~-~lp~~ 481 (567)
T 1dce_A 411 LKAVDPMRAA-YLDDLRSKFLLENSVLKME--YADVRVLHLAHKD-LTV--LCH-LEQLLLVTHLDLSHNR-LR-ALPPA 481 (567)
T ss_dssp HHHHCGGGHH-HHHHHHHHHHHHHHHHHHH--HTTCSEEECTTSC-CSS--CCC-GGGGTTCCEEECCSSC-CC-CCCGG
T ss_pred cccCcchhhc-ccchhhhhhhhcccccccC--ccCceEEEecCCC-CCC--CcC-ccccccCcEeecCccc-cc-ccchh
Confidence 77777 4444 33221 122222 2469999999987 653 444 6778999999999997 77 44568
Q ss_pred hhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhH
Q 006015 503 LSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVG 575 (664)
Q Consensus 503 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 575 (664)
+..+++|+.|++++| .++. ++ .+.++++|+.|++++| .++..........+++|+.|++++|++++..
T Consensus 482 ~~~l~~L~~L~Ls~N-~l~~--lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 482 LAALRCLEVLQASDN-ALEN--VD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp GGGCTTCCEEECCSS-CCCC--CG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred hhcCCCCCEEECCCC-CCCC--Cc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 889999999999999 6665 55 6788999999999999 4443321223345899999999999987754
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=3.8e-12 Score=124.82 Aligned_cols=271 Identities=12% Similarity=0.096 Sum_probs=127.4
Q ss_pred CCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCC-hH---H--------------HHHHHhc--------CC
Q 006015 327 CVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKIS-DV---S--------------ITHVTSS--------CT 380 (664)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~---~--------------~~~~~~~--------~~ 380 (664)
.+++++|.+.+. +....+..+...+++|+.|+|++|.... .. . ....+.+ ++
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 357889998874 4444454443338999999999886330 00 0 0111223 45
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCC---CCChHhHHHHhhCCCC
Q 006015 381 GLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICL---NITGEGLAHVGMCCSK 457 (664)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~l~~~~~~~l~~~~~~ 457 (664)
+|+.+.+.. . +....-.++. +|++|+.+++.++.+......+|..+.++..+...... .........+. .+..
T Consensus 102 ~L~~l~L~~-~-i~~I~~~aF~-~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~-~~~~ 177 (329)
T 3sb4_A 102 TLEKVILSE-K-IKNIEDAAFK-GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI-EGEP 177 (329)
T ss_dssp TCCC-CBCT-T-CCEECTTTTT-TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE-ESCC
T ss_pred CCcEEECCc-c-ccchhHHHhh-cCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc-cccc
Confidence 555555544 1 1111111111 45555555555554444444444444444444333210 00000000001 2333
Q ss_pred Cc-EEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhc-CCCCCEEEccCCCCCCHHHHHHHHhcCCcC
Q 006015 458 LK-ELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSK-CSRLNTFESRGCPLITSLGLAAIAVGCKQL 535 (664)
Q Consensus 458 L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 535 (664)
|+ .+.+.....+. ..+........+++.+.+.+. +.......+.. +++|+.+++++| .++.. ....|.+|++|
T Consensus 178 L~~~i~~~~~~~l~-~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I-~~~aF~~~~~L 252 (329)
T 3sb4_A 178 LETTIQVGAMGKLE-DEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT-NATTI-PDFTFAQKKYL 252 (329)
T ss_dssp CEEEEEECTTCCHH-HHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-CCCEE-CTTTTTTCTTC
T ss_pred cceeEEecCCCcHH-HHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-Cccee-cHhhhhCCCCC
Confidence 33 33333222111 111111112344555555553 34444444433 667777777765 34332 23345667777
Q ss_pred cEEeccCccccChhhHHHHHhcCcccC-eeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCcccc
Q 006015 536 IKLDIKWCHNINDVGMLPLAHFSQNLR-QINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGITK 613 (664)
Q Consensus 536 ~~L~l~~~~~i~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~ 613 (664)
+.|++.++ ++..+...+ .+|++|+ .+++.+ .++.+...+| .++++|+.+++++|.++.+++..|. |++|+.
T Consensus 253 ~~l~l~~n--i~~I~~~aF-~~~~~L~~~l~l~~-~l~~I~~~aF---~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 253 LKIKLPHN--LKTIGQRVF-SNCGRLAGTLELPA-SVTAIEFGAF---MGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp CEEECCTT--CCEECTTTT-TTCTTCCEEEEECT-TCCEECTTTT---TTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CEEECCcc--cceehHHHh-hCChhccEEEEEcc-cceEEchhhh---hCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 77777665 333222222 2366777 777766 5555444443 3344444566666777777665554 777776
Q ss_pred ee
Q 006015 614 VK 615 (664)
Q Consensus 614 l~ 615 (664)
++
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 65
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.14 E-value=9.4e-12 Score=114.67 Aligned_cols=34 Identities=26% Similarity=0.161 Sum_probs=14.2
Q ss_pred CCCEEEccCCCCChhhHHhhccCCCccEEcccCC
Q 006015 407 FLEELDLTDNEIDDEGLKSISRCSKLSVLKLGIC 440 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (664)
+|++|++++|.+....+..+..+++|+.|++++|
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N 74 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCC
Confidence 3444444444444433333334444444444444
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.13 E-value=6.3e-12 Score=123.22 Aligned_cols=104 Identities=16% Similarity=0.068 Sum_probs=56.1
Q ss_pred hcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcC-hhHHHHHHHcCCcCcEEeccCCCCCCchhhhhcc--
Q 006015 148 EAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVG-DLGVGLIAVKCKEIRSLDLSYLPITNKCLPSILK-- 224 (664)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~-- 224 (664)
.+.++++|.+++. +....+..+...+++|+.|++++|.... .... ..++.++.+.+..+.+. ...|..
T Consensus 23 ~~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~----~~~~~~~~~~~~~~~I~---~~aF~~~~ 93 (329)
T 3sb4_A 23 EANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA----GTYPNGKFYIYMANFVP---AYAFSNVV 93 (329)
T ss_dssp HHHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS----SSSGGGCCEEECTTEEC---TTTTEEEE
T ss_pred hhCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCcc----ccccccccccccccccC---HHHhcccc
Confidence 3467888888875 5555666666658889999888874331 1110 01222333333333322 223444
Q ss_pred ------CCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q 006015 225 ------LQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQ 263 (664)
Q Consensus 225 ------l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (664)
+++|+.|.+.. . +...+...|.. |++|+.+++.++.
T Consensus 94 ~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~-~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-K-IKNIEDAAFKG-CDNLKICQIRKKT 135 (329)
T ss_dssp TTEEEECTTCCC-CBCT-T-CCEECTTTTTT-CTTCCEEEBCCSS
T ss_pred cccccccCCCcEEECCc-c-ccchhHHHhhc-CcccceEEcCCCC
Confidence 67777777765 2 22222223444 6777777776654
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.12 E-value=1.5e-11 Score=112.43 Aligned_cols=132 Identities=16% Similarity=0.068 Sum_probs=70.4
Q ss_pred CCCEEEccCCCCChhhH-HhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 407 FLEELDLTDNEIDDEGL-KSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
.+++|++++|.+....+ ..+..+++|+.|++++| .++......+. .+++|++|++++|. ++. .....+..+++|+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~-~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~ 108 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFE-GASGVNEILLTSNR-LEN-VQHKMFKGLESLK 108 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSSC-CCC-CCGGGGTTCSSCC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhC-CCCCCCEEECCCCc-cCc-cCHhHhcCCcCCC
Confidence 44556666655555422 23455666666666666 55543322333 45666666666555 321 1122334556666
Q ss_pred EEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccc
Q 006015 486 MINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHN 545 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 545 (664)
+|++++|. ++...+..+..+++|+.|++++| .++.. .+..+..+++|+.|++++|+.
T Consensus 109 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 109 TLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN-QITTV-APGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EEECTTSC-CCCBCTTSSTTCTTCSEEECTTS-CCCCB-CTTTTTTCTTCCEEECCSCCE
T ss_pred EEECCCCc-CCeECHhHcCCCccCCEEECCCC-cCCEE-CHHHhcCCCCCCEEEecCcCC
Confidence 66666665 55555555666666666666666 33331 234455566666666666643
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=2.1e-11 Score=107.26 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=15.7
Q ss_pred CCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCC
Q 006015 429 CSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCV 467 (664)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 467 (664)
+++|+.|++++| .++.. ..+....++|+.|++++|.
T Consensus 18 ~~~L~~L~l~~n-~l~~i--~~~~~~~~~L~~L~Ls~N~ 53 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDNE 53 (176)
T ss_dssp TTSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSSC
T ss_pred cCCceEEEeeCC-CCchh--HHhhhcCCCCCEEECCCCC
Confidence 445555555555 44431 2222222344444444443
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.10 E-value=5.3e-12 Score=115.46 Aligned_cols=132 Identities=18% Similarity=0.186 Sum_probs=61.3
Q ss_pred CCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcC
Q 006015 456 SKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQL 535 (664)
Q Consensus 456 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 535 (664)
++|+.|++++|. ++. .....+..+++|++|++++|. ++...+..+..+++|++|++++| .++.. .+..+.++
T Consensus 32 ~~l~~L~l~~n~-i~~-i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l--- 103 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKV-IPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-KITEL-PKSLFEGL--- 103 (220)
T ss_dssp TTCCEEECCSSC-CCE-ECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS-CCCCC-CTTTTTTC---
T ss_pred cCCCEEECCCCc-CCC-cCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC-cCCcc-CHhHccCC---
Confidence 455566665554 331 111123344555555555554 54444444555555555555555 33221 11223334
Q ss_pred cEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCcccce
Q 006015 536 IKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGITKV 614 (664)
Q Consensus 536 ~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l 614 (664)
++|+.|++++|++++..+.. +..+++|+.+++++|.++.+++..+. +++|+.|
T Consensus 104 -----------------------~~L~~L~L~~N~l~~~~~~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 104 -----------------------FSLQLLLLNANKINCLRVDA---FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp -----------------------TTCCEEECCSSCCCCCCTTT---TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -----------------------CCCCEEECCCCCCCEeCHHH---cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 45555555555554433322 23333444555555555555444333 5556666
Q ss_pred eee-hhhc
Q 006015 615 KLQ-AAFK 621 (664)
Q Consensus 615 ~l~-n~~~ 621 (664)
+++ |.+.
T Consensus 158 ~L~~N~~~ 165 (220)
T 2v9t_B 158 HLAQNPFI 165 (220)
T ss_dssp ECCSSCEE
T ss_pred EeCCCCcC
Confidence 665 5544
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.10 E-value=1.9e-13 Score=135.37 Aligned_cols=223 Identities=14% Similarity=0.013 Sum_probs=152.4
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhh-HHhhccCCCccEE-cccCCCCCChHhHHHHhhCCC
Q 006015 379 CTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEG-LKSISRCSKLSVL-KLGICLNITGEGLAHVGMCCS 456 (664)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L-~l~~~~~l~~~~~~~l~~~~~ 456 (664)
.+++++|++++|.. +.. ....+.++++|++|++++|++.+.. ..+|.+++++..+ .+.+| +++......+. .++
T Consensus 29 ~~~l~~L~Ls~N~i-~~i-~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N-~l~~l~~~~f~-~l~ 104 (350)
T 4ay9_X 29 PRNAIELRFVLTKL-RVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN-NLLYINPEAFQ-NLP 104 (350)
T ss_dssp CTTCSEEEEESCCC-SEE-CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET-TCCEECTTSBC-CCT
T ss_pred CCCCCEEEccCCcC-CCc-CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC-cccccCchhhh-hcc
Confidence 36899999999765 221 1112238899999999999886543 4567788887764 44455 77765444444 789
Q ss_pred CCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCC-CCCEEEccCCCCCCHHHHHHHHhcCCcC
Q 006015 457 KLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCS-RLNTFESRGCPLITSLGLAAIAVGCKQL 535 (664)
Q Consensus 457 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L 535 (664)
+|++|++++|. ++.. ....+....++..+++.++..++......+..++ .++.|++++| .++. ++......++|
T Consensus 105 ~L~~L~l~~n~-l~~~-~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~--i~~~~f~~~~L 179 (350)
T 4ay9_X 105 NLQYLLISNTG-IKHL-PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQE--IHNSAFNGTQL 179 (350)
T ss_dssp TCCEEEEEEEC-CSSC-CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCE--ECTTSSTTEEE
T ss_pred ccccccccccc-cccC-Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccC--CChhhccccch
Confidence 99999999987 4321 1111223457888888887667766666666654 6899999999 6655 44444456789
Q ss_pred cEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCccccee
Q 006015 536 IKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVK 615 (664)
Q Consensus 536 ~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~ 615 (664)
++|++.+++.++..... ....+++|+.|++++|+++...+ ..+.+|++|+.+++.+ ++.+|. +.++++|+.++
T Consensus 180 ~~l~l~~~n~l~~i~~~-~f~~l~~L~~LdLs~N~l~~lp~---~~~~~L~~L~~l~~~~--l~~lP~-l~~l~~L~~l~ 252 (350)
T 4ay9_X 180 DELNLSDNNNLEELPND-VFHGASGPVILDISRTRIHSLPS---YGLENLKKLRARSTYN--LKKLPT-LEKLVALMEAS 252 (350)
T ss_dssp EEEECTTCTTCCCCCTT-TTTTEECCSEEECTTSCCCCCCS---SSCTTCCEEECTTCTT--CCCCCC-TTTCCSCCEEE
T ss_pred hHHhhccCCcccCCCHH-HhccCcccchhhcCCCCcCccCh---hhhccchHhhhccCCC--cCcCCC-chhCcChhhCc
Confidence 99999987665544321 22347999999999999987432 3367777777777644 445553 45589999999
Q ss_pred ee
Q 006015 616 LQ 617 (664)
Q Consensus 616 l~ 617 (664)
+.
T Consensus 253 l~ 254 (350)
T 4ay9_X 253 LT 254 (350)
T ss_dssp CS
T ss_pred CC
Confidence 87
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.09 E-value=2.7e-11 Score=111.61 Aligned_cols=133 Identities=14% Similarity=0.017 Sum_probs=63.8
Q ss_pred CCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCC
Q 006015 430 SKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRL 509 (664)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 509 (664)
++|+.|++++| .++......+. .+++|++|++++|. ++. .....+..+++|++|++++|. ++......+..+++|
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~-~l~~L~~L~L~~N~-l~~-i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFD-SLINLKELYLGSNQ-LGA-LPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCC-ccCccCHHHhh-CccCCcEEECCCCC-CCC-cChhhcccCCCcCEEECCCCc-CCccChhHhCcchhh
Confidence 45555555555 55443222232 45555555555554 321 111223445555555555554 554444445555555
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCC
Q 006015 510 NTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVT 572 (664)
Q Consensus 510 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 572 (664)
+.|++++| .++. ++..+..+++|+.|++++| .++.... .....+++|+.|++++|++.
T Consensus 115 ~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 115 KELFMCCN-KLTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CEEECCSS-CCCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred CeEeccCC-cccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence 55555555 3432 3334455555666666555 2222111 11122455666666666554
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.05 E-value=6.1e-11 Score=104.31 Aligned_cols=105 Identities=14% Similarity=0.052 Sum_probs=44.4
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccC-CCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRC-SKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCP 482 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (664)
.+++|+.|++++|.+... ..+..+ ++|+.|++++| .+++. ..+. .+++|++|++++|. ++.. ....+..++
T Consensus 17 ~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~--~~l~-~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~ 88 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN-EIRKL--DGFP-LLRRLKTLLVNNNR-ICRI-GEGLDQALP 88 (176)
T ss_dssp CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSS-CCCEE--CCCC-CCSSCCEEECCSSC-CCEE-CSCHHHHCT
T ss_pred CcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCC-CCCcc--cccc-cCCCCCEEECCCCc-cccc-CcchhhcCC
Confidence 345555555555555532 223332 25555555555 55442 1222 34455555555444 3210 111223344
Q ss_pred CCCEEeccCCCCCCHHHH-HhhhcCCCCCEEEccCC
Q 006015 483 DLEMINIAYLKDITDSSL-LSLSKCSRLNTFESRGC 517 (664)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~ 517 (664)
+|++|++++|. +++... ..+..+++|+.|++++|
T Consensus 89 ~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 89 DLTELILTNNS-LVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp TCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCC
Confidence 44444444444 332221 23334444444444444
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=5e-12 Score=113.76 Aligned_cols=108 Identities=22% Similarity=0.182 Sum_probs=45.4
Q ss_pred hhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhh
Q 006015 425 SISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLS 504 (664)
Q Consensus 425 ~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 504 (664)
.+..+++|+.|++++| .++... .+. .+++|+.|++++|. ++ .++..+..+++|++|++++|. +++.. .+.
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~--~~~-~l~~L~~L~l~~n~-l~--~l~~~~~~~~~L~~L~L~~N~-l~~l~--~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS--SLS-GMENLRILSLGRNL-IK--KIENLDAVADTLEELWISYNQ-IASLS--GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC--CHH-HHTTCCEEEEEEEE-EC--SCSSHHHHHHHCSEEEEEEEE-CCCHH--HHH
T ss_pred HHhcCCCCCEEECCCC-CCcccc--ccc-cCCCCCEEECCCCC-cc--cccchhhcCCcCCEEECcCCc-CCcCC--ccc
Confidence 4444455555555554 443321 222 34455555555443 22 122222233445555555544 44321 344
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCc
Q 006015 505 KCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 505 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (664)
.+++|+.|++++| .++..+....+..+++|++|++++|
T Consensus 113 ~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 113 KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence 4444555555444 3332111123444445555555544
No 131
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.05 E-value=8.5e-10 Score=107.98 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=30.6
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhh-CCCCCcEEEcC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGM-CCSKLKELDLY 464 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~~L~~L~l~ 464 (664)
.+|+|+.|+++++.-.. ...+ ..++|++|+|..| .++...+..+.. .+|+|+.|+|+
T Consensus 170 ~~P~L~~L~L~g~~~l~--l~~~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNLS--IGKK-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp TCTTCCEEEEECCBTCB--CCSC-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred cCCCCcEEEEeCCCCce--eccc-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEe
Confidence 56666666665541000 1112 2566666666666 666655555542 46666666664
No 132
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.03 E-value=5.7e-11 Score=108.60 Aligned_cols=132 Identities=16% Similarity=0.086 Sum_probs=95.5
Q ss_pred CCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcE
Q 006015 381 GLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKE 460 (664)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~ 460 (664)
.++.|++++|... .......+..+++|++|++++|.+....+..+..+++|+.|++++| .++......+. .+++|++
T Consensus 33 ~~~~L~L~~N~l~-~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~ 109 (220)
T 2v70_A 33 YTAELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFK-GLESLKT 109 (220)
T ss_dssp TCSEEECCSSCCC-EECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGT-TCSSCCE
T ss_pred CCCEEEcCCCcCC-ccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhc-CCcCCCE
Confidence 4556666665431 1111111237788888888888888777777888888999999888 77765444444 7888999
Q ss_pred EEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCC
Q 006015 461 LDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCP 518 (664)
Q Consensus 461 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 518 (664)
|++++|. ++. ..+..+..+++|++|++++|. ++...+..+..+++|+.|++++|+
T Consensus 110 L~Ls~N~-l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 110 LMLRSNR-ITC-VGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EECTTSC-CCC-BCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EECCCCc-CCe-ECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcC
Confidence 9998887 542 123345678899999999987 887777888899999999999995
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=7.8e-12 Score=112.48 Aligned_cols=126 Identities=19% Similarity=0.168 Sum_probs=69.7
Q ss_pred HHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHh
Q 006015 477 IACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAH 556 (664)
Q Consensus 477 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~ 556 (664)
.+..+++|++|++++|. +++.. .+..+++|+.|++++| .++. ++..+..+++|++|++++| .++.. +...
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l~--~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N-~l~~l---~~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKIS--SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIASL---SGIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCCC--CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEE-ECCCH---HHHH
T ss_pred HHhcCCCCCEEECCCCC-Ccccc--ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCC-cCCcC---Cccc
Confidence 33445555555555554 44321 4455566666666666 3332 3344445566777777776 33332 2223
Q ss_pred cCcccCeeeeccCCCChhHH-HHhhCCcccccceeeccCCCCHHHHHHH-----------HHhCCccccee
Q 006015 557 FSQNLRQINLSYTSVTDVGL-LSLASISCLQNMTILHLKGLSLNGLAAA-----------LLACGGITKVK 615 (664)
Q Consensus 557 ~~~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~~l~l~~n~~~~~~~~-----------~~~~~~L~~l~ 615 (664)
.+++|+.|++++|++++... .. +..+++|+.+++++|.+.+..+. +..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~---l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDK---LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHH---HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCcCCchhHHHH---HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 35677777777777665332 23 33344555666777766555322 44588999887
No 134
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.99 E-value=7.4e-09 Score=91.28 Aligned_cols=116 Identities=16% Similarity=0.201 Sum_probs=52.1
Q ss_pred CCCCCcEEEcCCCCCCChHHHHHH---HhcCCCCCEEeccCCCCCCHHHHHhhh----cCCCCCEEEccCCCCCCHHHHH
Q 006015 454 CCSKLKELDLYRCVGITDSGILTI---ACGCPDLEMINIAYLKDITDSSLLSLS----KCSRLNTFESRGCPLITSLGLA 526 (664)
Q Consensus 454 ~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~~~ 526 (664)
..++|++|++++|..+++.++..+ +..+++|++|+|++|. +++.....+. ..++|++|+|++| .+++.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~ 111 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGIL 111 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHH
Confidence 556666666666522555443332 2334555555555555 5554433332 2344555555555 44443322
Q ss_pred HH---HhcCCcCcEEec--cCccccChhhHHHHHhc---CcccCeeeeccCCCC
Q 006015 527 AI---AVGCKQLIKLDI--KWCHNINDVGMLPLAHF---SQNLRQINLSYTSVT 572 (664)
Q Consensus 527 ~~---~~~~~~L~~L~l--~~~~~i~~~~~~~~~~~---~~~L~~L~l~~n~l~ 572 (664)
.+ +...++|++|++ ++| .+++.+...+... .++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 22 223334444444 334 3444443332221 344444444444443
No 135
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=2.2e-09 Score=105.01 Aligned_cols=82 Identities=23% Similarity=0.125 Sum_probs=36.5
Q ss_pred cCCCccEEEcCCCCC----C---CchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHH
Q 006015 326 WCVSLKELSLSKCDG----V---TDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAF 398 (664)
Q Consensus 326 ~~~~L~~L~l~~~~~----~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 398 (664)
.+++|+.|.+..... + ....+..++..+|+|++|.++++....- +. . ..++|++|.+..|. ++...+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~-~-~~~~L~~L~L~~~~-l~~~~l 210 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GK-K-PRPNLKSLEIISGG-LPDSVV 210 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CS-C-BCTTCSEEEEECSB-CCHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---cc-c-cCCCCcEEEEecCC-CChHHH
Confidence 456777777754321 0 0112444555556666666655421111 11 0 14455555554433 334444
Q ss_pred HHHHh-hCCCCCEEEc
Q 006015 399 VLIGQ-RCRFLEELDL 413 (664)
Q Consensus 399 ~~~~~-~~~~L~~L~l 413 (664)
..++. .+|+|++|+|
T Consensus 211 ~~l~~~~lp~L~~L~L 226 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVL 226 (362)
T ss_dssp HHHHHSBCTTCCEEEE
T ss_pred HHHHHccCCCCcEEEE
Confidence 43332 3455555544
No 136
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.95 E-value=1.3e-08 Score=89.74 Aligned_cols=127 Identities=15% Similarity=0.156 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhh----cCCCCCEEEccCCCCCCHHHH---HHHHhcCCcCcEEeccCcc
Q 006015 472 SGILTIACGCPDLEMINIAYLKDITDSSLLSLS----KCSRLNTFESRGCPLITSLGL---AAIAVGCKQLIKLDIKWCH 544 (664)
Q Consensus 472 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~ 544 (664)
+.+...+..+++|++|++++|..+++.....+. ..++|++|+|++| .+++.+. ...+...++|++|++++|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N- 103 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN- 103 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-
Confidence 345556666677777777776226665544433 3566777777777 5665443 333445566777777776
Q ss_pred ccChhhHHHHHhc---CcccCeeee--ccCCCChhHHHHhhC-CcccccceeeccCCCCHHH
Q 006015 545 NINDVGMLPLAHF---SQNLRQINL--SYTSVTDVGLLSLAS-ISCLQNMTILHLKGLSLNG 600 (664)
Q Consensus 545 ~i~~~~~~~~~~~---~~~L~~L~l--~~n~l~~~~~~~l~~-~~~L~~L~~l~l~~n~~~~ 600 (664)
.+++.+...++.. .++|++|++ ++|.+++.+...+.. +...++|+.+++++|.+..
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 5666666555443 456777777 667777666555442 3444556666666666643
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.94 E-value=2.5e-11 Score=131.44 Aligned_cols=111 Identities=18% Similarity=0.068 Sum_probs=61.3
Q ss_pred HHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHh
Q 006015 423 LKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLS 502 (664)
Q Consensus 423 ~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 502 (664)
+..+..++.|+.|+|++| .+... ...+. .+++|++|+|++|. ++ .++..+..+++|++|+|++|. ++ ..+..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l-~~~~~-~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~-~lp~~ 288 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNI-SANIF-KYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LT-SLPAE 288 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCC-CGGGG-GCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CS-SCCSS
T ss_pred hhhhccCCCCcEEECCCC-CCCCC-Chhhc-CCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CC-ccChh
Confidence 344555666667777666 55432 12222 56666666666665 43 233334556666666666665 55 33445
Q ss_pred hhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCcc
Q 006015 503 LSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCH 544 (664)
Q Consensus 503 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 544 (664)
+..+++|++|+|++| .++. ++..+..+++|+.|++++|+
T Consensus 289 ~~~l~~L~~L~L~~N-~l~~--lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDN-MVTT--LPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp GGGGTTCSEEECCSS-CCCC--CCSSTTSCTTCCCEECTTSC
T ss_pred hcCCCCCCEEECCCC-CCCc--cChhhhcCCCccEEeCCCCc
Confidence 566666666666666 4443 44445566666666666663
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.90 E-value=3.8e-11 Score=130.05 Aligned_cols=149 Identities=16% Similarity=0.098 Sum_probs=98.7
Q ss_pred HhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcC
Q 006015 402 GQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGC 481 (664)
Q Consensus 402 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 481 (664)
...++.|+.|++++|.+.. .+..+..+++|+.|+|++| .++. .+..+. .+++|+.|+|++|. ++ .++..+..+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~-l~~~~~~l~~L~~L~Ls~N-~l~~-lp~~~~-~l~~L~~L~Ls~N~-l~--~lp~~~~~l 292 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN-ISANIFKYDFLTRLYLNGN-SLTE-LPAEIK-NLSNLRVLDLSHNR-LT--SLPAELGSC 292 (727)
T ss_dssp --CCCCCCEEECTTSCCSC-CCGGGGGCCSCSCCBCTTS-CCSC-CCGGGG-GGTTCCEEECTTSC-CS--SCCSSGGGG
T ss_pred hccCCCCcEEECCCCCCCC-CChhhcCCCCCCEEEeeCC-cCcc-cChhhh-CCCCCCEEeCcCCc-CC--ccChhhcCC
Confidence 3378899999999998874 4555668899999999999 8873 234444 78999999999988 65 445556778
Q ss_pred CCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCC-cCcEEeccCccccChhhHHHHHhcCcc
Q 006015 482 PDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCK-QLIKLDIKWCHNINDVGMLPLAHFSQN 560 (664)
Q Consensus 482 ~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~~~~i~~~~~~~~~~~~~~ 560 (664)
++|++|+|++|. ++.. +..+..+++|+.|+|++| .++.. ++..+..+. .+..+++++|.. + + .....
T Consensus 293 ~~L~~L~L~~N~-l~~l-p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~~~~~~~l~l~~N~l-~--~-----~~p~~ 360 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTTL-PWEFGNLCNLQFLGVEGN-PLEKQ-FLKILTEKSVTGLIFYLRDNRP-E--I-----PLPHE 360 (727)
T ss_dssp TTCSEEECCSSC-CCCC-CSSTTSCTTCCCEECTTS-CCCSH-HHHHHHHHHHHHHHHHHHHCCC-C--C-----CCCCC
T ss_pred CCCCEEECCCCC-CCcc-ChhhhcCCCccEEeCCCC-ccCCC-ChHHHhhcchhhhHHhhccCcc-c--C-----cCccc
Confidence 999999999997 7743 445888999999999999 45543 555554332 222366777632 1 1 11456
Q ss_pred cCeeeeccC
Q 006015 561 LRQINLSYT 569 (664)
Q Consensus 561 L~~L~l~~n 569 (664)
|+.|+++.|
T Consensus 361 l~~l~l~~n 369 (727)
T 4b8c_D 361 RRFIEINTD 369 (727)
T ss_dssp ---------
T ss_pred cceeEeecc
Confidence 778888777
No 139
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.84 E-value=1.6e-09 Score=72.45 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=36.0
Q ss_pred cccccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhh
Q 006015 9 KINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKH 52 (664)
Q Consensus 9 ~~~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~ 52 (664)
+...+..||+|++.+||+ ||+ .+++.+++.|||+|+.++...
T Consensus 5 ~~~~~~~LP~eil~~I~~-~L~-~~dl~~~~~Vck~w~~~~~~~ 46 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASDE 46 (53)
T ss_dssp ----CCSSCHHHHHHHHT-TSC-GGGHHHHHTTCHHHHHHHTCG
T ss_pred CCCCHHHCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhCCh
Confidence 456899999999999999 999 999999999999999998744
No 140
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.83 E-value=4e-10 Score=100.45 Aligned_cols=109 Identities=15% Similarity=0.040 Sum_probs=55.0
Q ss_pred CccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCC
Q 006015 431 KLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLN 510 (664)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~ 510 (664)
+|+.|++++| .++..........+++|++|++++|. ++. ..+..+.++++|++|++++|. +++.....+..+++|+
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 105 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTG-IEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLK 105 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCC-BCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCC
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCC-cCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCC
Confidence 5555555555 44443221112245555555555554 331 112233445566666666665 5555555555566666
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccc
Q 006015 511 TFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHN 545 (664)
Q Consensus 511 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 545 (664)
+|++++| .++.. .+..+..+++|++|++++|+.
T Consensus 106 ~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 106 TLNLYDN-QISCV-MPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EEECCSS-CCCEE-CTTSSTTCTTCCEEECTTCCB
T ss_pred EEECCCC-cCCee-CHHHhhcCCCCCEEEeCCCCc
Confidence 6666666 33331 233444556666666666643
No 141
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.71 E-value=3.6e-09 Score=94.15 Aligned_cols=108 Identities=14% Similarity=0.025 Sum_probs=53.5
Q ss_pred CCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCC
Q 006015 430 SKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRL 509 (664)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 509 (664)
++|+.|++++| .++... ..+. .+++|+.|++++|. ++. .....+.++++|++|++++|. ++......+..+++|
T Consensus 31 ~~l~~L~L~~n-~i~~ip-~~~~-~l~~L~~L~Ls~N~-i~~-i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVP-KELS-NYKHLTLIDLSNNR-IST-LSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEECCSS-CCCSCC-GGGG-GCTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTC
T ss_pred CCCCEEECCCC-cCchhH-HHhh-cccCCCEEECCCCc-CCE-eCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCC
Confidence 34555555555 444321 2222 45555555555554 321 111223445566666666655 555555555566666
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccc
Q 006015 510 NTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHN 545 (664)
Q Consensus 510 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 545 (664)
+.|++++| .++.. .+..+..+++|+.|++++|+.
T Consensus 105 ~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 105 RLLSLHGN-DISVV-PEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CEEECCSS-CCCBC-CTTTTTTCTTCCEEECCSSCE
T ss_pred CEEECCCC-CCCee-ChhhhhcCccccEEEeCCCCe
Confidence 66666666 33331 122344556666666666643
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.71 E-value=3.1e-09 Score=94.65 Aligned_cols=78 Identities=13% Similarity=0.038 Sum_probs=35.7
Q ss_pred ceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhh-hhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEE
Q 006015 179 KLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLP-SILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKAL 257 (664)
Q Consensus 179 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 257 (664)
++++++++ .++.++.. -.++++.|++++|.++...+. .+..+++|++|++++|.+....+ ..+.. +++|++|
T Consensus 11 ~~l~~s~~-~l~~ip~~----~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~-l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRD----IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEG-ASHIQEL 83 (192)
T ss_dssp TEEECTTS-CCSSCCSC----CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTT-CTTCCEE
T ss_pred CEEEcCCC-CcCcCccC----CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCC-cccCCEE
Confidence 45555555 33333321 123566666666655543332 24555555555555554333211 12222 4445555
Q ss_pred eccCCC
Q 006015 258 DMSSCQ 263 (664)
Q Consensus 258 ~l~~~~ 263 (664)
++++|.
T Consensus 84 ~Ls~N~ 89 (192)
T 1w8a_A 84 QLGENK 89 (192)
T ss_dssp ECCSCC
T ss_pred ECCCCc
Confidence 554443
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.71 E-value=2.7e-10 Score=114.64 Aligned_cols=61 Identities=21% Similarity=0.359 Sum_probs=30.4
Q ss_pred HhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCc
Q 006015 478 ACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 478 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (664)
+.+|.+|+.+++... ++......|.+|++|+.+.+..+ ++.. -...|.+|++|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I-~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKI-GANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEE-CTTTBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEe-hHHHhhCCCCCCEEEECCC
Confidence 344555666555442 44444455555666666665443 2211 1134455666666666543
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.70 E-value=4.6e-09 Score=92.33 Aligned_cols=61 Identities=13% Similarity=0.046 Sum_probs=26.2
Q ss_pred cCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCc
Q 006015 480 GCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (664)
.+++|++|++++|. ++......+..+++|+.|++++| .++.. .+..+..+++|++|++++|
T Consensus 74 ~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 74 KLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTN-QLKSV-PDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSS
T ss_pred CCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCC-cceEe-CHHHhcCCcccCEEEecCC
Confidence 34445555555544 44333333444455555555554 23221 1122233444444444444
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.70 E-value=6.5e-09 Score=91.37 Aligned_cols=110 Identities=13% Similarity=0.033 Sum_probs=76.9
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
++|++|+++++.+.......+..+++|++|++++| .++......+. .+++|++|++++|. ++. .....+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~l~~L~~L~l~~N~-l~~-~~~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFD-KLTKLTILYLHENK-LQS-LPNGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSSC-CCC-CCTTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHcc-CCCccCEEECCCCC-ccc-cCHHHhhCCcccC
Confidence 56777777777776655556677778888888887 77654332233 67888888888876 542 2223345678888
Q ss_pred EEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCC
Q 006015 486 MINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLI 520 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l 520 (664)
+|++++|. ++......+..+++|+.|++++|+..
T Consensus 104 ~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 104 ELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 88888886 77666666777889999999998543
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.69 E-value=8.2e-09 Score=91.85 Aligned_cols=107 Identities=18% Similarity=0.095 Sum_probs=67.8
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
+++++|++++|.+.. .+..+..+++|+.|++++| .++......+. .+++|++|++++|. ++. ..+..+..+++|+
T Consensus 31 ~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~-~l~~L~~L~Ls~N~-l~~-i~~~~f~~l~~L~ 105 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNN-RISTLSNQSFS-NMTQLLTLILSYNR-LRC-IPPRTFDGLKSLR 105 (193)
T ss_dssp TTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSSC-CCB-CCTTTTTTCTTCC
T ss_pred CCCCEEECCCCcCch-hHHHhhcccCCCEEECCCC-cCCEeCHhHcc-CCCCCCEEECCCCc-cCE-eCHHHhCCCCCCC
Confidence 356666666666653 3355666666777777666 66554333333 56677777777665 432 1122345677788
Q ss_pred EEeccCCCCCCHHHHHhhhcCCCCCEEEccCCC
Q 006015 486 MINIAYLKDITDSSLLSLSKCSRLNTFESRGCP 518 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 518 (664)
+|++++|. ++......+..+++|+.|++++|+
T Consensus 106 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 106 LLSLHGND-ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EEECCSSC-CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCC-CCeeChhhhhcCccccEEEeCCCC
Confidence 88888876 776666667778888888888874
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.66 E-value=7.3e-10 Score=111.46 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=19.1
Q ss_pred hcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccC
Q 006015 479 CGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRG 516 (664)
Q Consensus 479 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~ 516 (664)
.+|.+|+.+.+..+ ++......|.+|++|+.+++..
T Consensus 340 ~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 340 RGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred cCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 34555555555442 4444444555566666666544
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.55 E-value=1.8e-09 Score=107.90 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=14.6
Q ss_pred CCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCC
Q 006015 483 DLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGC 517 (664)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (664)
+|+.+.+.++ ++......|..|++|+.+.+.++
T Consensus 249 ~L~~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 249 GITTVKLPNG--VTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp CCSEEEEETT--CCEECTTTTTTCTTCCEEEEESS
T ss_pred CccEEEeCCC--ccEEChhHhhCCCCCCEEEeCCc
Confidence 4444444331 33333444444555555554443
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.47 E-value=9.5e-09 Score=102.62 Aligned_cols=58 Identities=5% Similarity=-0.027 Sum_probs=28.0
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCC-CCCcEEEcCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCC-SKLKELDLYR 465 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~-~~L~~L~l~~ 465 (664)
+|++|+.+.+.. .+......+|.+| +|+.+++.++ .+.......+. .+ .+++.|.+..
T Consensus 321 ~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~-~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 321 GNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWY-GFPDDITVIRVPA 379 (401)
T ss_dssp TCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCC-CSCTTCCEEEECG
T ss_pred CCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCC-CCccccccccc-CCCCCccEEEeCH
Confidence 555666666543 2444444555556 6666666655 33332111122 23 2555665554
No 150
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.40 E-value=5.8e-06 Score=71.83 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=65.1
Q ss_pred HHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHh---hCCCCCEEEccCCCCChhhHHhhc----cCCCccEEcccCCCCC
Q 006015 371 SITHVTSSCTGLTSLRMESCTLVPREAFVLIGQ---RCRFLEELDLTDNEIDDEGLKSIS----RCSKLSVLKLGICLNI 443 (664)
Q Consensus 371 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l 443 (664)
.+..+..+-+.|++|+++++..+.+.+...+++ .-+.|+.|+|++|.+.+.+..+++ .-+.|+.|+|+.| .|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~I 110 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FL 110 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cC
Confidence 344555556667777776654556665555442 234566666666666666554444 2456666666666 66
Q ss_pred ChHhHHHHhhCC---CCCcEEEcCCCC--CCChHH---HHHHHhcCCCCCEEeccCC
Q 006015 444 TGEGLAHVGMCC---SKLKELDLYRCV--GITDSG---ILTIACGCPDLEMINIAYL 492 (664)
Q Consensus 444 ~~~~~~~l~~~~---~~L~~L~l~~~~--~~~~~~---~~~~~~~~~~L~~L~l~~~ 492 (664)
++.+...+++.+ ..|++|+++++. .+.+.+ +...+..-+.|++|+++.+
T Consensus 111 g~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 111 TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 666655554322 346666665432 234332 3333333445555555443
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.36 E-value=1.3e-07 Score=82.11 Aligned_cols=61 Identities=11% Similarity=0.040 Sum_probs=26.2
Q ss_pred CCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCcc
Q 006015 481 CPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCH 544 (664)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 544 (664)
+++|++|++++|. ++......+..+++|+.|++++| .++.. .+..+.++++|++|++++|+
T Consensus 53 l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 53 LTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDN-QLKSI-PRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred cccCCEEECCCCC-cCccChhhccCCCCCCEEECCCC-ccCEe-CHHHhcCCCCCCEEEeCCCC
Confidence 3444444444443 44333333444444555555444 23221 11233445555555555553
No 152
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.31 E-value=1.1e-05 Score=70.15 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=30.2
Q ss_pred CCCCCcEEEcCCCCCCChHHHHHHHhc---CCCCCEEeccCCCCCCHHHHHhhh----cCCCCCEEEccCCCCCCHHH
Q 006015 454 CCSKLKELDLYRCVGITDSGILTIACG---CPDLEMINIAYLKDITDSSLLSLS----KCSRLNTFESRGCPLITSLG 524 (664)
Q Consensus 454 ~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~ 524 (664)
.-+.|++|+++++..+.+.+...+... -..|+.|+|++|. +++.....+. .-+.|++|+|++| .|++.|
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 445555555555423555443333222 2345555555554 4444433332 2334444444444 344433
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.30 E-value=2.2e-07 Score=80.92 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=26.0
Q ss_pred CCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCcc
Q 006015 481 CPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCH 544 (664)
Q Consensus 481 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 544 (664)
+++|++|++++|. ++......+..+++|+.|++++| .++.. .+..+..+++|++|++++|+
T Consensus 56 l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 56 LVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN-HLKSI-PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred CcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC-cccee-CHHHhccccCCCEEEeCCCC
Confidence 3444444444443 43333333344445555555544 33221 11224445555555555553
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.18 E-value=9.5e-08 Score=82.95 Aligned_cols=108 Identities=14% Similarity=0.074 Sum_probs=79.7
Q ss_pred CCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCccccc
Q 006015 508 RLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQN 587 (664)
Q Consensus 508 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 587 (664)
+.+.++++++ .++. ++.. -.++|++|++++|. ++.... .....+++|+.|++++|++++..+.. +..+++
T Consensus 10 ~~~~l~~s~n-~l~~--ip~~--~~~~l~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~---f~~l~~ 79 (170)
T 3g39_A 10 SGTTVDCSGK-SLAS--VPTG--IPTTTQVLYLYDNQ-ITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGV---FDKLTQ 79 (170)
T ss_dssp ETTEEECTTS-CCSS--CCSC--CCTTCSEEECCSSC-CCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTT---TTTCTT
T ss_pred CCCEEEeCCC-CcCc--cCcc--CCCCCcEEEcCCCc-CCccCh-hhhcCcccCCEEECCCCCcCccChhh---ccCCCC
Confidence 3578999998 5555 3322 24789999999994 443221 12234799999999999998755433 556777
Q ss_pred ceeeccCCCCHHHHHHHHHh-CCcccceeee-hhhcccCC
Q 006015 588 MTILHLKGLSLNGLAAALLA-CGGITKVKLQ-AAFKQLLP 625 (664)
Q Consensus 588 L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~-n~~~~~~p 625 (664)
|+.+++++|.++.+++..+. +++|+.|+|+ |.+....+
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 78999999999999887554 9999999999 88875443
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.14 E-value=1.5e-07 Score=94.59 Aligned_cols=102 Identities=17% Similarity=0.253 Sum_probs=51.5
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCC-CCCChHHHHHHHhcCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRC-VGITDSGILTIACGCP 482 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~ 482 (664)
+|++|+.+.+.. .+......+|.+|.+|+.+.|..+ ++..+-..+. +|.+|+.+.+..+ ..+.+ ..+.+|+
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~-~C~~L~~i~ip~sv~~I~~----~aF~~C~ 357 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFA-GCEQLERIAIPSSVTKIPE----SAFSNCT 357 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCTTCCEEEECTTCCBCCG----GGGTTCT
T ss_pred cccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhh-CCCCCCEEEECcccCEEhH----hHhhCCC
Confidence 566666666642 344444456666777777776543 4433333333 6677777777542 11221 2345677
Q ss_pred CCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCC
Q 006015 483 DLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGC 517 (664)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (664)
+|+.+++.++. .....+..+.+|+.+.+..+
T Consensus 358 ~L~~i~~~~~~----~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 358 ALNNIEYSGSR----SQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCCEEEESSCH----HHHHTCBCCCCC--------
T ss_pred CCCEEEECCce----eehhhhhccCCCCEEEeCCC
Confidence 77777777643 12345556667777766544
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.12 E-value=6.2e-07 Score=90.01 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=28.2
Q ss_pred HhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCc
Q 006015 478 ACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWC 543 (664)
Q Consensus 478 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 543 (664)
+.+|.+|+.+.|..+ ++......|.+|.+|+.+.+..+ ++.. -...|.+|++|+.+++.++
T Consensus 307 F~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I-~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VTKI-PESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CCBC-CGGGGTTCTTCCEEEESSC
T ss_pred ecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cCEE-hHhHhhCCCCCCEEEECCc
Confidence 344555555555442 44444444555555555555432 1111 1123445555555555544
No 157
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.05 E-value=1.6e-06 Score=75.47 Aligned_cols=84 Identities=12% Similarity=-0.000 Sum_probs=42.8
Q ss_pred CCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCC
Q 006015 430 SKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRL 509 (664)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 509 (664)
++|+.|++++| .++......+. .+++|++|++++|. ++. .....+..+++|++|++++|. ++......+..+++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~-~l~~L~~L~Ls~N~-l~~-i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFD-HLVNLQQLYFNSNK-LTA-IPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTT-TCTTCCEEECCSSC-CCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred CCCcEEEeCCC-CccccCHHHhc-CCcCCCEEECCCCC-CCc-cChhHhCCcchhhEEECCCCc-cceeCHHHhccccCC
Confidence 34444555444 44432222222 44555555555544 321 111123445666666666665 655444456667777
Q ss_pred CEEEccCCC
Q 006015 510 NTFESRGCP 518 (664)
Q Consensus 510 ~~L~l~~~~ 518 (664)
+.|++++|+
T Consensus 108 ~~L~L~~N~ 116 (174)
T 2r9u_A 108 THIYLYNNP 116 (174)
T ss_dssp SEEECCSSC
T ss_pred CEEEeCCCC
Confidence 777777774
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.78 E-value=1.3e-06 Score=86.03 Aligned_cols=107 Identities=13% Similarity=0.085 Sum_probs=79.2
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCcCcEEeccC-ccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccce
Q 006015 511 TFESRGCPLITSLGLAAIAVGCKQLIKLDIKW-CHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMT 589 (664)
Q Consensus 511 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~-~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 589 (664)
.++++++..++. +|. +..+++|++|++++ | .++..... ....+++|+.|+|++|+|++..+..|. +|++|+
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n-~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~~~~~~---~l~~L~ 83 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQ-HLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDAFH---FTPRLS 83 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCS-SCCEECGG-GSCSCCCCSEEECCSSCCCEECTTGGG---SCSCCC
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCC-CCCCcChh-HhccccCCCEEECCCCccceeCHHHhc---CCcCCC
Confidence 467776535665 666 78889999999997 6 54432211 223489999999999999987765554 455666
Q ss_pred eeccCCCCHHHHHHHHHhCCcccceeee-hhhcccCC
Q 006015 590 ILHLKGLSLNGLAAALLACGGITKVKLQ-AAFKQLLP 625 (664)
Q Consensus 590 ~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~~~~p 625 (664)
.+++++|.++++++..+....|+.|+|+ |.+...-.
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred EEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 8999999999999888774459999999 87774433
No 159
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.75 E-value=7.2e-06 Score=75.87 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=37.8
Q ss_pred ccccccccHHHHHHHHhhcccCccchh-HHHHHhHHHHHHHHhh
Q 006015 10 INLFDLLSEEIVFIILDCLNTNPFDKK-SFSLVCKSFYITESKH 52 (664)
Q Consensus 10 ~~~~~~LP~evl~~If~~~L~~~~~~~-~~~~vck~W~~~~~~~ 52 (664)
...+..||+|++..||+ ||| .++++ ++++|||+|+.++...
T Consensus 48 ~~~~~~LP~ell~~Il~-~Lp-~~~L~~r~~~VCk~Wr~l~~~~ 89 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLA-ELP-ATELVQACRLVCLRWKELVDGA 89 (297)
T ss_dssp CCCTTSSCHHHHHHHHH-TSC-HHHHHHTGGGTCHHHHHHHTSH
T ss_pred ccChhhCCHHHHHHHHH-cCC-HHHHHHHHHHHhHHHHHHhcCh
Confidence 35889999999999999 999 99999 9999999999998754
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.70 E-value=1.3e-05 Score=78.93 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=46.4
Q ss_pred hCCCCCEEEccC-CCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCC
Q 006015 404 RCRFLEELDLTD-NEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCP 482 (664)
Q Consensus 404 ~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (664)
.+++|++|+|++ |.+....+..|..+++|+.|+|++| .++......+. .+++|+.|+|++|. ++. .....+..++
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~L~l~~N~-l~~-~~~~~~~~~~ 104 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH-FTPRLSRLNLSFNA-LES-LSWKTVQGLS 104 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGG-SCSCCCEEECCSSC-CSC-CCSTTTCSCC
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhc-CCcCCCEEeCCCCc-cce-eCHHHcccCC
Confidence 555666666664 6666655556666666666666666 66554333333 56666666666665 331 1111222222
Q ss_pred CCCEEeccCCC
Q 006015 483 DLEMINIAYLK 493 (664)
Q Consensus 483 ~L~~L~l~~~~ 493 (664)
|+.|++.+|+
T Consensus 105 -L~~l~l~~N~ 114 (347)
T 2ifg_A 105 -LQELVLSGNP 114 (347)
T ss_dssp -CCEEECCSSC
T ss_pred -ceEEEeeCCC
Confidence 6666666655
No 161
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.70 E-value=1.1e-05 Score=73.52 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=38.2
Q ss_pred cccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhhc
Q 006015 11 NLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHRK 54 (664)
Q Consensus 11 ~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~~ 54 (664)
..++.||+||+.+||+ ||+ ++|+.+++.|||+||.++.+...
T Consensus 3 ~~l~~LP~ei~l~Ils-fL~-p~DL~~l~~vcr~Wr~la~D~~L 44 (312)
T 3l2o_B 3 STLTRLPIDVQLYILS-FLS-PHDLCQLGSTNHYWNETVRDPIL 44 (312)
T ss_dssp CHHHHSCHHHHHHHHH-TSC-HHHHHHHHTTCHHHHHHHTCHHH
T ss_pred chhHhCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhccchH
Confidence 3588999999999999 999 99999999999999999886643
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=0.00011 Score=67.84 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=44.8
Q ss_pred hhCCCCCEEEccCCCCCh--hhHHhhccCCCccEEcccCCCCCChH-hHHHHhhCCCCCcEEEcCCCCCCCh------HH
Q 006015 403 QRCRFLEELDLTDNEIDD--EGLKSISRCSKLSVLKLGICLNITGE-GLAHVGMCCSKLKELDLYRCVGITD------SG 473 (664)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~l~~~-~~~~l~~~~~~L~~L~l~~~~~~~~------~~ 473 (664)
.++++|+.|++++|.+.+ ..+..+..+++|+.|+|++| .+++. .+..+. .+ +|++|.+++|+ +.. ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~Np-l~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGNS-LCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTST-TGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCCc-CccccCcchhH
Confidence 356666666666666655 22344455666777777666 66553 122221 22 66677776666 432 12
Q ss_pred HHHHHhcCCCCCEEe
Q 006015 474 ILTIACGCPDLEMIN 488 (664)
Q Consensus 474 ~~~~~~~~~~L~~L~ 488 (664)
...++..+|+|+.|+
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 334455566666655
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.60 E-value=9.9e-05 Score=68.08 Aligned_cols=82 Identities=21% Similarity=0.258 Sum_probs=43.5
Q ss_pred hcCCcCcEEeccCccccChhh-HHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHH--------
Q 006015 530 VGCKQLIKLDIKWCHNINDVG-MLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNG-------- 600 (664)
Q Consensus 530 ~~~~~L~~L~l~~~~~i~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~-------- 600 (664)
.++++|+.|++++|. ++... +......+++|+.|+|++|++++. ..+..+..+ .|+.+++.+|.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccC-CcceEEccCCcCccccCcchhH
Confidence 345666666666663 33221 112223356666666666666653 223334444 56666666666653
Q ss_pred HHHHHHhCCccccee
Q 006015 601 LAAALLACGGITKVK 615 (664)
Q Consensus 601 ~~~~~~~~~~L~~l~ 615 (664)
....+..+|+|+.||
T Consensus 243 ~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 243 ISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHCTTCCEES
T ss_pred HHHHHHHCcccCeEC
Confidence 112233478888877
No 164
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.31 E-value=6.8e-05 Score=77.13 Aligned_cols=44 Identities=20% Similarity=0.026 Sum_probs=40.0
Q ss_pred ccccccccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHh
Q 006015 6 CSEKINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESK 51 (664)
Q Consensus 6 ~~~~~~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~ 51 (664)
+....|.+..||+|++.+||+ ||+ .+++.++++|||+|++++..
T Consensus 8 ~~~~~d~~~~lp~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 8 DNLKRDLITSLPFEISLKIFN-YLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp -CCCCCHHHHSCHHHHHHHHT-TSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred cccccCChHHCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHcC
Confidence 344679999999999999999 999 99999999999999999876
No 165
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.17 E-value=0.00013 Score=74.26 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=40.2
Q ss_pred cccccccccccHH----HHHHHHhhcccCccchhHHHHHhHHHHHHHHhh
Q 006015 7 SEKINLFDLLSEE----IVFIILDCLNTNPFDKKSFSLVCKSFYITESKH 52 (664)
Q Consensus 7 ~~~~~~~~~LP~e----vl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~ 52 (664)
....|++..||+| |+.+||+ ||+ .+++.++++|||+|+.++...
T Consensus 5 ~~~~d~~~~lp~e~~~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~~ 52 (435)
T 1p22_A 5 MLQRDFITALPARGLDHIAENILS-YLD-AKSLCAAELVCKEWYRVTSDG 52 (435)
T ss_dssp CSCCCHHHHTGGGTCHHHHHHHHT-TCC-HHHHHHHHHHCHHHHHHHHHT
T ss_pred hhhcChHHHCCcchHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 3457999999999 9999999 999 999999999999999998754
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.10 E-value=4.4e-05 Score=76.09 Aligned_cols=60 Identities=15% Similarity=0.282 Sum_probs=31.2
Q ss_pred hcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccC
Q 006015 479 CGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKW 542 (664)
Q Consensus 479 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 542 (664)
.+|++|+.+.+.++. ++......|.+|++|+.+.+..+ ++.. -...|.+|++|+.+.+..
T Consensus 283 ~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~--l~~I-~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 SGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA--LKTI-QVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEE-CTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccc-cceehhhhhcCCCCCCEEEcCcc--ccEE-HHHHhhCCCCCCEEEECC
Confidence 445566666665543 44444455556666666666432 2211 113455666666666654
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.04 E-value=0.0001 Score=73.45 Aligned_cols=11 Identities=9% Similarity=0.220 Sum_probs=6.1
Q ss_pred CCCCCEEeccC
Q 006015 251 CKSLKALDMSS 261 (664)
Q Consensus 251 ~~~L~~L~l~~ 261 (664)
..+|+.+.+..
T Consensus 45 ~~~i~~v~ip~ 55 (379)
T 4h09_A 45 RDRISEVRVNS 55 (379)
T ss_dssp GGGCSEEEECT
T ss_pred ccCCEEEEeCC
Confidence 45566666543
No 168
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.92 E-value=0.00017 Score=73.68 Aligned_cols=43 Identities=19% Similarity=0.348 Sum_probs=39.5
Q ss_pred cccccccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHh
Q 006015 7 SEKINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESK 51 (664)
Q Consensus 7 ~~~~~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~ 51 (664)
....|.++.||+|++.+||+ ||+ .+++.++++|||+|+.++..
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~-~l~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLS-FLE-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHT-TSC-HHHHHHHTTSCHHHHHHHTC
T ss_pred cccCChhHHCCHHHHHHHHH-hCC-HHHHHHHHHHhHHHHhhcCc
Confidence 44678999999999999999 999 99999999999999999764
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=85.99 E-value=0.43 Score=38.26 Aligned_cols=17 Identities=6% Similarity=-0.259 Sum_probs=8.2
Q ss_pred HhcCCcCcEEeccCccc
Q 006015 529 AVGCKQLIKLDIKWCHN 545 (664)
Q Consensus 529 ~~~~~~L~~L~l~~~~~ 545 (664)
+..+++|+.|+|.+|+.
T Consensus 51 f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 51 LDALPALRTAHLGANPW 67 (130)
T ss_dssp GGGCTTCCEEECCSSCC
T ss_pred hhhccccCEEEecCCCe
Confidence 33444555555555543
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=82.45 E-value=1.2 Score=35.55 Aligned_cols=39 Identities=15% Similarity=-0.136 Sum_probs=28.0
Q ss_pred CcCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCC
Q 006015 202 KEIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGID 240 (664)
Q Consensus 202 ~~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 240 (664)
++|+.|+|++|.|+......|..+++|+.|+|.+|...=
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 357888888887776555666777788888887776543
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.56 E-value=8.3 Score=28.85 Aligned_cols=34 Identities=18% Similarity=0.072 Sum_probs=13.8
Q ss_pred cCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEcc
Q 006015 480 GCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESR 515 (664)
Q Consensus 480 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~ 515 (664)
+|.+|+.+.|... ++......|.+|.+|+.+.+.
T Consensus 18 ~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 18 GNTVIREITVQPN--IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp TCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEEC
T ss_pred CCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEc
Confidence 3444444444431 333333334444444444443
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=33.06 E-value=8.2 Score=28.90 Aligned_cols=15 Identities=0% Similarity=0.036 Sum_probs=6.4
Q ss_pred HhhccCCCccEEccc
Q 006015 424 KSISRCSKLSVLKLG 438 (664)
Q Consensus 424 ~~l~~~~~L~~L~l~ 438 (664)
.+|..|.+|+.+.|.
T Consensus 14 ~aF~~c~~L~~i~iP 28 (100)
T 2lz0_A 14 SLFAGNTVIREITVQ 28 (100)
T ss_dssp CTTTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcC
Confidence 334444444444443
Done!