Query 006015
Match_columns 664
No_of_seqs 414 out of 3987
Neff 11.2
Searched_HMMs 13730
Date Mon Mar 25 13:42:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006015.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006015hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.9 1.5E-20 1.1E-24 192.9 34.8 170 405-579 254-446 (460)
2 d1z7xw1 c.10.1.1 (W:1-460) Rib 99.9 1.3E-19 9.5E-24 185.9 37.7 230 329-564 199-459 (460)
3 d2astb2 c.10.1.3 (B:2136-2419) 99.9 2E-21 1.4E-25 183.6 20.6 255 307-575 4-262 (284)
4 d2astb2 c.10.1.3 (B:2136-2419) 99.9 4.2E-21 3E-25 181.4 22.1 218 278-504 46-267 (284)
5 d2omza2 c.10.2.1 (A:33-416) In 99.8 1E-18 7.4E-23 174.4 20.5 189 378-596 195-383 (384)
6 d2omza2 c.10.2.1 (A:33-416) In 99.8 2.6E-18 1.9E-22 171.4 20.8 190 351-569 194-383 (384)
7 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.7 2.4E-15 1.8E-19 146.5 22.0 120 455-578 157-292 (344)
8 d2ca6a1 c.10.1.2 (A:2-345) Rna 99.7 3.8E-14 2.8E-18 137.9 29.0 258 297-573 25-316 (344)
9 d1ogqa_ c.10.2.8 (A:) Polygala 99.6 1.2E-19 9.1E-24 174.9 -12.9 200 404-617 99-299 (313)
10 d1ozna_ c.10.2.7 (A:) Reticulo 99.6 2.8E-16 2E-20 148.6 2.4 211 406-627 32-244 (284)
11 d1xkua_ c.10.2.7 (A:) Decorin 99.5 2.3E-15 1.7E-19 144.0 8.0 246 203-497 11-256 (305)
12 d1ogqa_ c.10.2.8 (A:) Polygala 99.5 1.2E-17 8.6E-22 160.8 -9.8 132 177-315 51-186 (313)
13 d1ozna_ c.10.2.7 (A:) Reticulo 99.5 1.7E-15 1.2E-19 143.1 3.6 238 303-580 32-269 (284)
14 d1h6ua2 c.10.2.1 (A:36-262) In 99.5 2.1E-14 1.6E-18 130.3 9.4 185 407-618 42-226 (227)
15 d1xkua_ c.10.2.7 (A:) Decorin 99.5 3.3E-15 2.4E-19 142.9 4.0 82 278-364 171-252 (305)
16 d1p9ag_ c.10.2.7 (G:) von Will 99.5 2.3E-15 1.7E-19 140.4 0.2 176 407-621 32-208 (266)
17 d1h6ua2 c.10.2.1 (A:36-262) In 99.4 1.5E-13 1.1E-17 124.6 9.9 186 379-594 40-225 (227)
18 d1p9ag_ c.10.2.7 (G:) von Will 99.4 8.6E-15 6.2E-19 136.4 0.7 178 380-572 31-208 (266)
19 d1h6ta2 c.10.2.1 (A:31-240) In 99.4 3.6E-13 2.6E-17 120.0 8.4 98 407-517 47-144 (210)
20 d1h6ta2 c.10.2.1 (A:31-240) In 99.4 1.6E-13 1.2E-17 122.3 6.0 166 428-618 44-209 (210)
21 d2omxa2 c.10.2.1 (A:37-235) In 99.4 9E-13 6.6E-17 116.3 10.6 148 405-573 39-186 (199)
22 d2omxa2 c.10.2.1 (A:37-235) In 99.3 1.9E-13 1.4E-17 120.7 4.9 163 427-614 37-199 (199)
23 d1jl5a_ c.10.2.6 (A:) Leucine 99.2 6E-11 4.3E-15 115.6 15.0 56 506-573 283-338 (353)
24 d1fs1a1 a.158.1.1 (A:109-149) 99.1 1.4E-11 1E-15 74.9 3.6 38 13-52 1-38 (41)
25 d1jl5a_ c.10.2.6 (A:) Leucine 99.1 1.4E-10 1E-14 112.9 12.1 71 454-541 282-352 (353)
26 d1a9na_ c.10.2.4 (A:) Spliceso 99.1 6.7E-12 4.9E-16 105.7 1.2 14 504-517 60-73 (162)
27 d1a9na_ c.10.2.4 (A:) Spliceso 99.1 1.6E-11 1.2E-15 103.4 2.7 105 405-517 17-122 (162)
28 d1w8aa_ c.10.2.7 (A:) Slit {Fr 99.0 3.3E-12 2.4E-16 111.8 -3.6 154 430-598 29-182 (192)
29 d1dcea3 c.10.2.2 (A:444-567) R 99.0 1E-10 7.3E-15 93.2 3.4 88 503-599 16-103 (124)
30 d1xwdc1 c.10.2.7 (C:18-259) Fo 99.0 3.4E-12 2.5E-16 117.0 -6.3 201 406-617 29-233 (242)
31 d1dcea3 c.10.2.2 (A:444-567) R 98.9 8.3E-11 6.1E-15 93.7 1.2 11 559-569 90-100 (124)
32 d1m9la_ c.10.3.1 (A:) Outer ar 98.9 2.1E-11 1.5E-15 106.6 -3.2 126 478-615 44-180 (198)
33 d1xwdc1 c.10.2.7 (C:18-259) Fo 98.9 1.3E-11 9.8E-16 112.9 -5.1 182 404-595 51-234 (242)
34 d1m9la_ c.10.3.1 (A:) Outer ar 98.7 1.8E-09 1.3E-13 94.0 3.0 110 144-263 42-151 (198)
35 d1w8aa_ c.10.2.7 (A:) Slit {Fr 98.7 1.8E-09 1.3E-13 94.0 2.1 61 277-339 77-137 (192)
36 d1nexb1 a.158.1.1 (B:270-369) 98.6 2.5E-09 1.8E-13 81.0 1.3 41 10-52 3-43 (100)
37 d1pgva_ c.10.1.1 (A:) Tropomod 98.6 3.2E-07 2.3E-11 77.0 14.0 94 372-466 7-110 (167)
38 d1pgva_ c.10.1.1 (A:) Tropomod 98.6 4.4E-07 3.2E-11 76.1 14.3 94 448-543 7-110 (167)
39 d1io0a_ c.10.1.1 (A:) Tropomod 98.5 1.4E-06 9.9E-11 73.1 16.0 67 450-517 11-84 (166)
40 d1io0a_ c.10.1.1 (A:) Tropomod 98.5 1.5E-06 1.1E-10 72.8 15.8 120 372-492 9-142 (166)
41 d2ovrb1 a.158.1.1 (B:2263-2364 98.5 1.6E-08 1.1E-12 77.1 1.9 44 7-52 13-56 (102)
42 d2ifga3 c.10.2.7 (A:36-191) Hi 98.3 2E-08 1.4E-12 83.4 -1.5 87 531-621 29-116 (156)
43 d1p22a1 a.158.1.1 (A:135-252) 98.2 2.5E-07 1.8E-11 72.2 3.1 43 9-53 7-53 (118)
44 d2ifga3 c.10.2.7 (A:36-191) Hi 98.2 2.6E-08 1.9E-12 82.6 -3.8 117 533-656 8-128 (156)
45 d1koha1 c.10.2.3 (A:201-362) m 97.7 1.4E-05 1E-09 66.1 5.5 8 251-258 145-152 (162)
46 d1koha1 c.10.2.3 (A:201-362) m 97.7 2E-05 1.4E-09 65.3 5.6 87 399-488 58-152 (162)
No 1
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.89 E-value=1.5e-20 Score=192.91 Aligned_cols=170 Identities=19% Similarity=0.162 Sum_probs=90.6
Q ss_pred CCCCCEEEccCCCCChhhH----HhhccCCCccEEcccCCCCCChHhHHHHhh----CCCCCcEEEcCCCCCCChHH---
Q 006015 405 CRFLEELDLTDNEIDDEGL----KSISRCSKLSVLKLGICLNITGEGLAHVGM----CCSKLKELDLYRCVGITDSG--- 473 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~--- 473 (664)
...++.++++++.+..... ..+...+.++.+++++| .+++.+...+.. ....|+.+.+++|. +++.+
T Consensus 254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n-~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~-l~~~~~~~ 331 (460)
T d1z7xw1 254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSH 331 (460)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccc-cccccccchhhccccccccccccccccccc-hhhhhhhh
Confidence 3445555555554443322 22233455555566555 555544443321 23456666666654 44333
Q ss_pred HHHHHhcCCCCCEEeccCCCCCCHHHHHhhh-----cCCCCCEEEccCCCCCCHHHH---HHHHhcCCcCcEEeccCccc
Q 006015 474 ILTIACGCPDLEMINIAYLKDITDSSLLSLS-----KCSRLNTFESRGCPLITSLGL---AAIAVGCKQLIKLDIKWCHN 545 (664)
Q Consensus 474 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~ 545 (664)
+......+++|++|+|++|. +++.....+. ..+.|++|++++| .+++.++ ...+..+++|++|++++| .
T Consensus 332 l~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~ 408 (460)
T d1z7xw1 332 FSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-C 408 (460)
T ss_dssp HHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-S
T ss_pred cccccccccchhhhheeeec-ccCcccchhhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCC-c
Confidence 22333445566666666665 6554443332 2455666666666 5655433 334455667777777766 5
Q ss_pred cChhhHHHHHhc----CcccCeeeeccCCCChhHHHHh
Q 006015 546 INDVGMLPLAHF----SQNLRQINLSYTSVTDVGLLSL 579 (664)
Q Consensus 546 i~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~l 579 (664)
+++.+...+... ...|+.|++.+|.+.+.....+
T Consensus 409 i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l 446 (460)
T d1z7xw1 409 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446 (460)
T ss_dssp CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence 666666555432 2357777777777666555544
No 2
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.88 E-value=1.3e-19 Score=185.90 Aligned_cols=230 Identities=20% Similarity=0.210 Sum_probs=130.5
Q ss_pred CccEEEcCCCCCCCc--hhHHHHHhhCCCccEEecCCCCCCCh---HHHHHHHhcCCCCcEEEcCCCCCCCHHHHH---H
Q 006015 329 SLKELSLSKCDGVTD--EGLSYVATKHRDLRKLDITCCRKISD---VSITHVTSSCTGLTSLRMESCTLVPREAFV---L 400 (664)
Q Consensus 329 ~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~ 400 (664)
....+.+..+....+ ......+...+.++.+.+.++..... ............++.+++++|... ..... .
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~-~~~~~~~~~ 277 (460)
T d1z7xw1 199 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT-AKGCGDLCR 277 (460)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC-HHHHHHHHH
T ss_pred cccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccc-ccccccccc
Confidence 445555555432111 11223344556666666666542111 111223334556777777765542 22211 1
Q ss_pred HHhhCCCCCEEEccCCCCChhhHHhhc-----cCCCccEEcccCCCCCChHhHHHHh---hCCCCCcEEEcCCCCCCChH
Q 006015 401 IGQRCRFLEELDLTDNEIDDEGLKSIS-----RCSKLSVLKLGICLNITGEGLAHVG---MCCSKLKELDLYRCVGITDS 472 (664)
Q Consensus 401 ~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~ 472 (664)
.....+.++.++++++.+.+.+...+. ....|+.+++++| .+++.+...+. ..+++|++|++++|. +++.
T Consensus 278 ~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~~ 355 (460)
T d1z7xw1 278 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNNR-LEDA 355 (460)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHH
T ss_pred cccccccccccccccccccccccchhhcccccccccccccccccc-chhhhhhhhcccccccccchhhhheeeec-ccCc
Confidence 122567777777777777665554443 2356778888877 77766554443 345678888888776 7766
Q ss_pred HHHHHHh----cCCCCCEEeccCCCCCCHHHHHh----hhcCCCCCEEEccCCCCCCHHHHHHHHh----cCCcCcEEec
Q 006015 473 GILTIAC----GCPDLEMINIAYLKDITDSSLLS----LSKCSRLNTFESRGCPLITSLGLAAIAV----GCKQLIKLDI 540 (664)
Q Consensus 473 ~~~~~~~----~~~~L~~L~l~~~~~l~~~~~~~----l~~~~~L~~L~l~~~~~l~~~~~~~~~~----~~~~L~~L~l 540 (664)
++..+.. ..+.|++|++++|. +++..... +..+++|++|+|++| .+++.++..... +...|+.|++
T Consensus 356 g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l 433 (460)
T d1z7xw1 356 GVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVL 433 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred ccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEEC
Confidence 6554432 34568888888886 77765544 345678888888888 677766555443 2336888888
Q ss_pred cCccccChhhHHHH---HhcCcccCee
Q 006015 541 KWCHNINDVGMLPL---AHFSQNLRQI 564 (664)
Q Consensus 541 ~~~~~i~~~~~~~~---~~~~~~L~~L 564 (664)
.++ .+.+.....+ ....|+|+.|
T Consensus 434 ~~~-~~~~~~~~~l~~l~~~~~~l~~~ 459 (460)
T d1z7xw1 434 YDI-YWSEEMEDRLQALEKDKPSLRVI 459 (460)
T ss_dssp TTC-CCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CCC-CCCHHHHHHHHHHHHhCCCCEEe
Confidence 887 4444333322 2224555543
No 3
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87 E-value=2e-21 Score=183.65 Aligned_cols=255 Identities=15% Similarity=0.230 Sum_probs=176.3
Q ss_pred EEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEE
Q 006015 307 SIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLR 386 (664)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 386 (664)
.+++++..+.......+.. ..+..+.+.... +.. .. .......+|++|++++|. ++...+..++.++++|++|.
T Consensus 4 ~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~-~~~-~~-~~~~~~~~L~~LdLs~~~-i~~~~l~~l~~~c~~L~~L~ 77 (284)
T d2astb2 4 TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSF-MDQ-PL-AEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLS 77 (284)
T ss_dssp EEECTTCBCCHHHHHHHHH--TTCSEEECTTCE-ECS-CC-CSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEE
T ss_pred EEECCCCCCCchHHHHHHh--ccceEeeccccc-ccc-ch-hhhccCCCCCEEECCCCc-cCHHHHHHHHHhCCCccccc
Confidence 5666666665555554442 234444444321 100 00 001133567778887764 56666666777778888888
Q ss_pred cCCCCCCCHHHHHHHHhhCCCCCEEEccCC-CCChhhHHhhc-cCCCccEEcccCCCCCChHhHHH-HhhCCCCCcEEEc
Q 006015 387 MESCTLVPREAFVLIGQRCRFLEELDLTDN-EIDDEGLKSIS-RCSKLSVLKLGICLNITGEGLAH-VGMCCSKLKELDL 463 (664)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~-l~~~~~~L~~L~l 463 (664)
+.+|. +++..+..++ .+++|++|++++| .+++.+...+. .+++|++|++++|..+++.+... +...+++|+.|++
T Consensus 78 L~~~~-l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l 155 (284)
T d2astb2 78 LEGLR-LSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 155 (284)
T ss_dssp CTTCB-CCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred ccccC-CCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhh
Confidence 87764 5666666666 6778888888774 67766655543 47888888888877787776644 4445688999999
Q ss_pred CCCC-CCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccC
Q 006015 464 YRCV-GITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKW 542 (664)
Q Consensus 464 ~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 542 (664)
++|. .+++.++..+..+||+|++|++++|..+++..+..+.++++|++|++++|..+++.++.. +.++|+|+.|++++
T Consensus 156 ~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~-L~~~~~L~~L~l~~ 234 (284)
T d2astb2 156 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE-LGEIPTLKTLQVFG 234 (284)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG-GGGCTTCCEEECTT
T ss_pred cccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHH-HhcCCCCCEEeeeC
Confidence 8863 578888888888899999999999887888888888889999999999988888765543 56788999999988
Q ss_pred ccccChhhHHHHHhcCcccCeeeeccCCCChhH
Q 006015 543 CHNINDVGMLPLAHFSQNLRQINLSYTSVTDVG 575 (664)
Q Consensus 543 ~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 575 (664)
| +++.+...+...+|+|+ +..+.+++..
T Consensus 235 ~--~~d~~l~~l~~~lp~L~---i~~~~ls~~~ 262 (284)
T d2astb2 235 I--VPDGTLQLLKEALPHLQ---INCSHFTTIA 262 (284)
T ss_dssp S--SCTTCHHHHHHHSTTSE---ESCCCSCCTT
T ss_pred C--CCHHHHHHHHHhCcccc---ccCccCCCCC
Confidence 8 56777777666566654 5566676644
No 4
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.87 E-value=4.2e-21 Score=181.37 Aligned_cols=218 Identities=20% Similarity=0.344 Sum_probs=169.2
Q ss_pred CCCcEeecCCCCCCcHh-HHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCc
Q 006015 278 GGLQQLTLAHGSPVTLS-IANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDL 356 (664)
Q Consensus 278 ~~L~~L~l~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (664)
.+|++|+++++ .+... ....+..+++|++|+++++.+.+..+..++ .+++|++|++++|..+++.++......+++|
T Consensus 46 ~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 46 FRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp BCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhc
Confidence 46677777666 34333 445567778888888888888887888877 6788999999888888888888777888999
Q ss_pred cEEecCCCCCCChHHHHHHH-hcCCCCcEEEcCCCC-CCCHHHHHHHHhhCCCCCEEEccCC-CCChhhHHhhccCCCcc
Q 006015 357 RKLDITCCRKISDVSITHVT-SSCTGLTSLRMESCT-LVPREAFVLIGQRCRFLEELDLTDN-EIDDEGLKSISRCSKLS 433 (664)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~ 433 (664)
++|++++|..+++..+.... ..+++|+.|++++|. .+++.++..++.++++|++|++++| .+++..+..+.++++|+
T Consensus 124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~ 203 (284)
T d2astb2 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203 (284)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence 99999988878777665443 345789999998864 5778888888878999999999886 68888888899999999
Q ss_pred EEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhh
Q 006015 434 VLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLS 504 (664)
Q Consensus 434 ~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 504 (664)
+|++++|..+++.++..+. .+|+|+.|++++| +++.++..+...+|+|+. +|..+++.....++
T Consensus 204 ~L~L~~C~~i~~~~l~~L~-~~~~L~~L~l~~~--~~d~~l~~l~~~lp~L~i----~~~~ls~~~~~~~~ 267 (284)
T d2astb2 204 HLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHLQI----NCSHFTTIARPTIG 267 (284)
T ss_dssp EEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS--SCTTCHHHHHHHSTTSEE----SCCCSCCTTCSSCS
T ss_pred EEECCCCCCCChHHHHHHh-cCCCCCEEeeeCC--CCHHHHHHHHHhCccccc----cCccCCCCCCCccC
Confidence 9999998789988887776 6899999999988 677788888888888763 33336654444443
No 5
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.80 E-value=1e-18 Score=174.41 Aligned_cols=189 Identities=20% Similarity=0.206 Sum_probs=92.4
Q ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCC
Q 006015 378 SCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSK 457 (664)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 457 (664)
.+++++.+.++++...... .. ..+++|++|+++++.+.+. ..+..+++|+.|++++| .+++.. .+. .+++
T Consensus 195 ~l~~~~~l~l~~n~i~~~~---~~-~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~--~~~-~~~~ 264 (384)
T d2omza2 195 KLTNLESLIATNNQISDIT---PL-GILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN-QISNLA--PLS-GLTK 264 (384)
T ss_dssp GCTTCSEEECCSSCCCCCG---GG-GGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS-CCCCCG--GGT-TCTT
T ss_pred cccccceeeccCCccCCCC---cc-cccCCCCEEECCCCCCCCc--chhhcccccchhccccC-ccCCCC--ccc-cccc
Confidence 4555555555554321110 11 1455666666666655542 24455566666666666 554422 222 4566
Q ss_pred CcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcE
Q 006015 458 LKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIK 537 (664)
Q Consensus 458 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 537 (664)
|+.|+++++. ++. +.. +..++.++.+.+.+|. +++ +..+..+++++.|++++| .+++ ++ .+..+++|++
T Consensus 265 L~~L~l~~~~-l~~--~~~-~~~~~~l~~l~~~~n~-l~~--~~~~~~~~~l~~L~ls~n-~l~~--l~-~l~~l~~L~~ 333 (384)
T d2omza2 265 LTELKLGANQ-ISN--ISP-LAGLTALTNLELNENQ-LED--ISPISNLKNLTYLTLYFN-NISD--IS-PVSSLTKLQR 333 (384)
T ss_dssp CSEEECCSSC-CCC--CGG-GTTCTTCSEEECCSSC-CSC--CGGGGGCTTCSEEECCSS-CCSC--CG-GGGGCTTCCE
T ss_pred CCEeeccCcc-cCC--CCc-cccccccccccccccc-ccc--ccccchhcccCeEECCCC-CCCC--Cc-ccccCCCCCE
Confidence 6666666554 321 111 2345556666666654 442 223455566666666665 3433 11 1445566666
Q ss_pred EeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCC
Q 006015 538 LDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGL 596 (664)
Q Consensus 538 L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n 596 (664)
|++++| .+++.. ....+++|++|++++|++++..| +.++++|+.+++++|
T Consensus 334 L~L~~n-~l~~l~---~l~~l~~L~~L~l~~N~l~~l~~-----l~~l~~L~~L~L~~N 383 (384)
T d2omza2 334 LFFANN-KVSDVS---SLANLTNINWLSAGHNQISDLTP-----LANLTRITQLGLNDQ 383 (384)
T ss_dssp EECCSS-CCCCCG---GGGGCTTCCEEECCSSCCCBCGG-----GTTCTTCSEEECCCE
T ss_pred EECCCC-CCCCCh---hHcCCCCCCEEECCCCcCCCChh-----hccCCCCCEeeCCCC
Confidence 666666 333322 12235666666666666555321 333444445555544
No 6
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}
Probab=99.78 E-value=2.6e-18 Score=171.43 Aligned_cols=190 Identities=22% Similarity=0.258 Sum_probs=113.4
Q ss_pred hhCCCccEEecCCCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCC
Q 006015 351 TKHRDLRKLDITCCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCS 430 (664)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 430 (664)
..+++++.+.++++.. .... . ...+++|+.|++++|..... ..+. .+++|+.++++++.+.+.. .+..++
T Consensus 194 ~~l~~~~~l~l~~n~i-~~~~--~-~~~~~~L~~L~l~~n~l~~~---~~l~-~l~~L~~L~l~~n~l~~~~--~~~~~~ 263 (384)
T d2omza2 194 AKLTNLESLIATNNQI-SDIT--P-LGILTNLDELSLNGNQLKDI---GTLA-SLTNLTDLDLANNQISNLA--PLSGLT 263 (384)
T ss_dssp GGCTTCSEEECCSSCC-CCCG--G-GGGCTTCCEEECCSSCCCCC---GGGG-GCTTCSEEECCSSCCCCCG--GGTTCT
T ss_pred ccccccceeeccCCcc-CCCC--c-ccccCCCCEEECCCCCCCCc---chhh-cccccchhccccCccCCCC--cccccc
Confidence 3555666666665542 2211 0 23456666666666543221 1122 5677777777777666532 356677
Q ss_pred CccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCC
Q 006015 431 KLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLN 510 (664)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~ 510 (664)
+|+.|+++++ .++.. ..+. .++.++.+.+.+|. +++ +. .+..+++++.|++++|. +++.. .+..+++|+
T Consensus 264 ~L~~L~l~~~-~l~~~--~~~~-~~~~l~~l~~~~n~-l~~--~~-~~~~~~~l~~L~ls~n~-l~~l~--~l~~l~~L~ 332 (384)
T d2omza2 264 KLTELKLGAN-QISNI--SPLA-GLTALTNLELNENQ-LED--IS-PISNLKNLTYLTLYFNN-ISDIS--PVSSLTKLQ 332 (384)
T ss_dssp TCSEEECCSS-CCCCC--GGGT-TCTTCSEEECCSSC-CSC--CG-GGGGCTTCSEEECCSSC-CSCCG--GGGGCTTCC
T ss_pred cCCEeeccCc-ccCCC--Cccc-cccccccccccccc-ccc--cc-ccchhcccCeEECCCCC-CCCCc--ccccCCCCC
Confidence 7777777777 66542 2223 56777777777766 432 11 24556777888887776 66432 366777888
Q ss_pred EEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccC
Q 006015 511 TFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYT 569 (664)
Q Consensus 511 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n 569 (664)
+|++++| .+++ ++ .+.++++|++|++++| .+++. .+ ...+++|+.|+|++|
T Consensus 333 ~L~L~~n-~l~~--l~-~l~~l~~L~~L~l~~N-~l~~l--~~-l~~l~~L~~L~L~~N 383 (384)
T d2omza2 333 RLFFANN-KVSD--VS-SLANLTNINWLSAGHN-QISDL--TP-LANLTRITQLGLNDQ 383 (384)
T ss_dssp EEECCSS-CCCC--CG-GGGGCTTCCEEECCSS-CCCBC--GG-GTTCTTCSEEECCCE
T ss_pred EEECCCC-CCCC--Ch-hHcCCCCCCEEECCCC-cCCCC--hh-hccCCCCCEeeCCCC
Confidence 8888887 5554 33 3567788888888777 34432 22 234678888888776
No 7
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.67 E-value=2.4e-15 Score=146.46 Aligned_cols=120 Identities=15% Similarity=0.198 Sum_probs=56.2
Q ss_pred CCCCcEEEcCCCCCCChHH---HHHHHhcCCCCCEEeccCCCCCCHHHHH-----hhhcCCCCCEEEccCCCCCCHHHH-
Q 006015 455 CSKLKELDLYRCVGITDSG---ILTIACGCPDLEMINIAYLKDITDSSLL-----SLSKCSRLNTFESRGCPLITSLGL- 525 (664)
Q Consensus 455 ~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~-----~l~~~~~L~~L~l~~~~~l~~~~~- 525 (664)
.+.|+.+.++++. +++.+ +...+..++.|+.|++++|. +++.... .+..+++|+.|++++| .+++.+.
T Consensus 157 ~~~L~~l~l~~n~-i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~ 233 (344)
T d2ca6a1 157 APPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSS 233 (344)
T ss_dssp CCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHH
T ss_pred Ccccceeeccccc-ccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhcccccccc-cccccccc
Confidence 4555555555544 44332 22233345555555555554 5443221 2334555555555555 3433322
Q ss_pred --HHHHhcCCcCcEEeccCccccChhhHHHHHhc-----CcccCeeeeccCCCChhHHHH
Q 006015 526 --AAIAVGCKQLIKLDIKWCHNINDVGMLPLAHF-----SQNLRQINLSYTSVTDVGLLS 578 (664)
Q Consensus 526 --~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~-----~~~L~~L~l~~n~l~~~~~~~ 578 (664)
...+..+++|++|++++| .+++.+...++.. .++|++|++++|+|++.+...
T Consensus 234 ~L~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~ 292 (344)
T d2ca6a1 234 ALAIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRT 292 (344)
T ss_dssp HHHHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHH
T ss_pred cccccccccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHH
Confidence 223344555555555555 4455444443321 234555555555555544333
No 8
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=99.65 E-value=3.8e-14 Score=137.86 Aligned_cols=258 Identities=17% Similarity=0.158 Sum_probs=127.6
Q ss_pred HHhhcCCCccEEEecCCccCHhHHHHHHhc---CCCccEEEcCCCCC--CCc---h---hHHHHHhhCCCccEEecCCCC
Q 006015 297 NGLKKLSMLQSIKLDGSVVTRAGLKAIGDW---CVSLKELSLSKCDG--VTD---E---GLSYVATKHRDLRKLDITCCR 365 (664)
Q Consensus 297 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~--~~~---~---~~~~~~~~~~~L~~L~l~~~~ 365 (664)
..+....+|+.|++++|.+.+.....++.. .++|+.+++.++.. ..+ . .+...+..+++|++|++++|.
T Consensus 25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 445666778888888887777776666543 36777777776531 111 0 123334456677777777664
Q ss_pred CCCh---HHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCC
Q 006015 366 KISD---VSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLN 442 (664)
Q Consensus 366 ~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 442 (664)
. ++ ..+...+...++|++|++++|.. +..+...++..+.. + .........+.|+.+.++++ .
T Consensus 105 i-~~~~~~~l~~~l~~~~~L~~L~l~~n~l-~~~~~~~l~~~l~~---~---------~~~~~~~~~~~L~~l~l~~n-~ 169 (344)
T d2ca6a1 105 F-GPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKIARALQE---L---------AVNKKAKNAPPLRSIICGRN-R 169 (344)
T ss_dssp C-CTTTHHHHHHHHHHCTTCCEEECCSSCC-HHHHHHHHHHHHHH---H---------HHHHHHHTCCCCCEEECCSS-C
T ss_pred c-ccccccchhhhhcccccchheecccccc-cccccccccccccc---c---------ccccccccCcccceeecccc-c
Confidence 2 22 22333444566666666666543 23322222210000 0 00000112344555555554 4
Q ss_pred CChHhHHHHh---hCCCCCcEEEcCCCCCCChHHHHHH----HhcCCCCCEEeccCCCCCCHHHHH----hhhcCCCCCE
Q 006015 443 ITGEGLAHVG---MCCSKLKELDLYRCVGITDSGILTI----ACGCPDLEMINIAYLKDITDSSLL----SLSKCSRLNT 511 (664)
Q Consensus 443 l~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~----~l~~~~~L~~ 511 (664)
+++.+...+. ..++.|+.|++++|. +++.++... +..+++|+.|++++|. +++.... .+..+++|++
T Consensus 170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~ 247 (344)
T d2ca6a1 170 LENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRE 247 (344)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCE
T ss_pred ccccccccccchhhhhhhhccccccccc-ccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchh
Confidence 4444333221 134555555555554 444433221 2334555555555554 5444322 2334556666
Q ss_pred EEccCCCCCCHHHHHHHH---hc--CCcCcEEeccCccccChhhHHHHHh----cCcccCeeeeccCCCCh
Q 006015 512 FESRGCPLITSLGLAAIA---VG--CKQLIKLDIKWCHNINDVGMLPLAH----FSQNLRQINLSYTSVTD 573 (664)
Q Consensus 512 L~l~~~~~l~~~~~~~~~---~~--~~~L~~L~l~~~~~i~~~~~~~~~~----~~~~L~~L~l~~n~l~~ 573 (664)
|++++| .+++.++..+. .. .+.|+.|++++| .+++.+...+.. .+++|+.|++++|.+.+
T Consensus 248 L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 248 LGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp EECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred hhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 666666 45554433332 22 245666666666 456555444332 25667777777776644
No 9
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.63 E-value=1.2e-19 Score=174.89 Aligned_cols=200 Identities=13% Similarity=0.045 Sum_probs=90.7
Q ss_pred hCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCC
Q 006015 404 RCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPD 483 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 483 (664)
++++|++|++++|++....+..+..+++|+.+++++| .+....+..+. .++.|+.+++++|. ++. .++..+..+..
T Consensus 99 ~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N-~~~~~~p~~l~-~l~~L~~l~l~~n~-l~~-~ip~~~~~l~~ 174 (313)
T d1ogqa_ 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSIS-SLPNLVGITFDGNR-ISG-AIPDSYGSFSK 174 (313)
T ss_dssp GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGG-GCTTCCEEECCSSC-CEE-ECCGGGGCCCT
T ss_pred cccccchhhhccccccccccccccchhhhcccccccc-cccccCchhhc-cCcccceeeccccc-ccc-ccccccccccc
Confidence 4555555555555554444444444555555555554 33322222222 45555555555544 221 12222223333
Q ss_pred C-CEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccC
Q 006015 484 L-EMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLR 562 (664)
Q Consensus 484 L-~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~ 562 (664)
+ +.+.+++|. +++..+..+..+.. ..+++.++..... ++..+..+++|+.+++.+|... +..+....+++|+
T Consensus 175 l~~~l~~~~n~-l~~~~~~~~~~l~~-~~l~l~~~~~~~~--~~~~~~~~~~l~~l~~~~~~l~---~~~~~~~~~~~L~ 247 (313)
T d1ogqa_ 175 LFTSMTISRNR-LTGKIPPTFANLNL-AFVDLSRNMLEGD--ASVLFGSDKNTQKIHLAKNSLA---FDLGKVGLSKNLN 247 (313)
T ss_dssp TCCEEECCSSE-EEEECCGGGGGCCC-SEEECCSSEEEEC--CGGGCCTTSCCSEEECCSSEEC---CBGGGCCCCTTCC
T ss_pred ccccccccccc-cccccccccccccc-ccccccccccccc--cccccccccccccccccccccc---ccccccccccccc
Confidence 2 455555544 44443444444332 2455554422111 2333344555666666655321 1122222345666
Q ss_pred eeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee
Q 006015 563 QINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ 617 (664)
Q Consensus 563 ~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~ 617 (664)
.|++++|++++.+|..++. +++|+.+++++|++++..+.+.++++|+.++++
T Consensus 248 ~L~Ls~N~l~g~iP~~l~~---L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~ 299 (313)
T d1ogqa_ 248 GLDLRNNRIYGTLPQGLTQ---LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA 299 (313)
T ss_dssp EEECCSSCCEECCCGGGGG---CTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred cccCccCeecccCChHHhC---CCCCCEEECcCCcccccCCCcccCCCCCHHHhC
Confidence 6666666666555544433 334445566666665321223335566666666
No 10
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.56 E-value=2.8e-16 Score=148.59 Aligned_cols=211 Identities=16% Similarity=0.093 Sum_probs=143.7
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
+++++|+|++|.++......|.++++|+.|+++++ .+.......+. .++.++.+.+..+..++.. ....+.++++|+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~-~~~~~~~l~~~~~~~~~~l-~~~~~~~l~~L~ 108 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFT-GLALLEQLDLSDNAQLRSV-DPATFHGLGRLH 108 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTT-TCTTCCEEECCSCTTCCCC-CTTTTTTCTTCC
T ss_pred CCCCEEECcCCcCCCCCHHHhhccccccccccccc-ccccccccccc-ccccccccccccccccccc-cchhhcccccCC
Confidence 35677777777777666666777778888888777 66654433333 5677777776655444321 123345678888
Q ss_pred EEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeee
Q 006015 486 MINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQIN 565 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~ 565 (664)
+|++++|. +.......+...++|+.+++++| .++.. .+..+..+++|+.|++++| .++.... ....++++|+.++
T Consensus 109 ~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N-~l~~i-~~~~f~~~~~L~~L~l~~N-~l~~l~~-~~f~~l~~L~~l~ 183 (284)
T d1ozna_ 109 TLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQAL-PDDTFRDLGNLTHLFLHGN-RISSVPE-RAFRGLHSLDRLL 183 (284)
T ss_dssp EEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEE
T ss_pred EEecCCcc-cccccccccchhcccchhhhccc-ccccc-ChhHhccccchhhcccccC-cccccch-hhhccccccchhh
Confidence 88888877 65555556667788888888888 55442 2345667788888888888 4433221 1223478899999
Q ss_pred eccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCcccceeee-hhhcccCChh
Q 006015 566 LSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGITKVKLQ-AAFKQLLPQP 627 (664)
Q Consensus 566 l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~-n~~~~~~p~~ 627 (664)
+++|++++..|..|.. +++|+.+++++|.+.++++..+. +++|+.|+++ |.+...-+..
T Consensus 184 l~~N~l~~i~~~~f~~---l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~ 244 (284)
T d1ozna_ 184 LHQNRVAHVHPHAFRD---LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (284)
T ss_dssp CCSSCCCEECTTTTTT---CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred hhhccccccChhHhhh---hhhcccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence 9999888876655444 45566888889998888776665 8999999998 8777555543
No 11
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.55 E-value=2.3e-15 Score=144.02 Aligned_cols=246 Identities=15% Similarity=0.106 Sum_probs=116.0
Q ss_pred cCcEEeccCCCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCCCcChhhHHHHHhccCCCcE
Q 006015 203 EIRSLDLSYLPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQNISHLGLSSLTSSIGGLQQ 282 (664)
Q Consensus 203 ~L~~L~l~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (664)
..+.++-++..++ .+|..+. +++++|++++|....-. ...|.. +++|++|++++|....
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~-~~~f~~-l~~L~~L~l~~n~~~~---------------- 69 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIK-DGDFKN-LKNLHTLILINNKISK---------------- 69 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBC-TTTTTT-CTTCCEEECCSSCCCC----------------
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcC-hhHhhc-cccccccccccccccc----------------
Confidence 3455666665555 3454442 56777777776543321 112333 6666666666655332
Q ss_pred eecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecC
Q 006015 283 LTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDIT 362 (664)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (664)
..+..|..+++|+.|++++|.+..... ...+.++.|.+..+. +.... ...+.....+..+...
T Consensus 70 -----------i~~~~f~~l~~L~~L~l~~n~l~~l~~----~~~~~l~~L~~~~n~-l~~l~-~~~~~~~~~~~~l~~~ 132 (305)
T d1xkua_ 70 -----------ISPGAFAPLVKLERLYLSKNQLKELPE----KMPKTLQELRVHENE-ITKVR-KSVFNGLNQMIVVELG 132 (305)
T ss_dssp -----------BCTTTTTTCTTCCEEECCSSCCSBCCS----SCCTTCCEEECCSSC-CCBBC-HHHHTTCTTCCEEECC
T ss_pred -----------cchhhhhCCCccCEecccCCccCcCcc----chhhhhhhhhccccc-hhhhh-hhhhhccccccccccc
Confidence 222334444444444444444322110 022344555544433 21111 1112334444444444
Q ss_pred CCCCCChHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCC
Q 006015 363 CCRKISDVSITHVTSSCTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLN 442 (664)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 442 (664)
.+...........+..+++|+.+.+.+|....-. ...+++|++|+++++......+..+..++.++.|++++| .
T Consensus 133 ~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~-----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~ 206 (305)
T d1xkua_ 133 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP-----QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-S 206 (305)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC-----SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-C
T ss_pred cccccccCCCccccccccccCccccccCCccccC-----cccCCccCEEECCCCcCCCCChhHhhccccccccccccc-c
Confidence 4332221111222334455555555554331100 013456666666666666555566666666666666666 5
Q ss_pred CChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCH
Q 006015 443 ITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITD 497 (664)
Q Consensus 443 l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 497 (664)
++......+. .+++|++|++++|. ++ .++..+..+++|++|++++|. ++.
T Consensus 207 l~~~~~~~~~-~l~~L~~L~L~~N~-L~--~lp~~l~~l~~L~~L~Ls~N~-i~~ 256 (305)
T d1xkua_ 207 ISAVDNGSLA-NTPHLRELHLNNNK-LV--KVPGGLADHKYIQVVYLHNNN-ISA 256 (305)
T ss_dssp CCEECTTTGG-GSTTCCEEECCSSC-CS--SCCTTTTTCSSCCEEECCSSC-CCC
T ss_pred cccccccccc-ccccceeeeccccc-cc--ccccccccccCCCEEECCCCc-cCc
Confidence 6554333333 55666666666664 33 222233445566666666654 443
No 12
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Probab=99.53 E-value=1.2e-17 Score=160.83 Aligned_cols=132 Identities=18% Similarity=0.128 Sum_probs=61.3
Q ss_pred CcceEeccccCCcCh--hHHHHHHHcCCcCcEEeccC-CCCCCchhhhhccCCCcceEeccCCCCCCHHHHHHHHHcCCC
Q 006015 177 NLKLISLKWCLGVGD--LGVGLIAVKCKEIRSLDLSY-LPITNKCLPSILKLQHLEDLILEGCFGIDDCSLAALKHRCKS 253 (664)
Q Consensus 177 ~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 253 (664)
+++.|+++++...+. ++... .++++|++|++++ |.+.+.+|..++++++|++|++++|.+.+..+. .+.. +++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l--~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~-~~~~-~~~ 126 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSL--ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQ-IKT 126 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGG--GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGG-CTT
T ss_pred EEEEEECCCCCCCCCCCCChHH--hcCccccccccccccccccccccccccccccchhhhccccccccccc-cccc-hhh
Confidence 466666666533332 22222 3566666666654 455555666666666666666666544332111 1222 555
Q ss_pred CCEEeccCCCCcChhhHHHHHhccCCCcEeecCCCCCCcHhHHHHhhcCCCc-cEEEecCCcc
Q 006015 254 LKALDMSSCQNISHLGLSSLTSSIGGLQQLTLAHGSPVTLSIANGLKKLSML-QSIKLDGSVV 315 (664)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L-~~L~l~~~~~ 315 (664)
|+.+++++|..... ++..+..++.++.++++++ .+.+..|..+..+.++ +.+.++++.+
T Consensus 127 L~~l~l~~N~~~~~--~p~~l~~l~~L~~l~l~~n-~l~~~ip~~~~~l~~l~~~l~~~~n~l 186 (313)
T d1ogqa_ 127 LVTLDFSYNALSGT--LPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp CCEEECCSSEEESC--CCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred hccccccccccccc--CchhhccCcccceeecccc-ccccccccccccccccccccccccccc
Confidence 55555555432221 2223344444444444444 3333333334333332 3444444433
No 13
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51 E-value=1.7e-15 Score=143.13 Aligned_cols=238 Identities=16% Similarity=0.041 Sum_probs=143.7
Q ss_pred CCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCccEEecCCCCCCChHHHHHHHhcCCCC
Q 006015 303 SMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLRKLDITCCRKISDVSITHVTSSCTGL 382 (664)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (664)
+++++|+|++|.++......+. .+++|++|+++++. +.... ...+.. .+.+
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~ls~n~-l~~i~-~~~~~~--------------------------~~~~ 82 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFR-ACRNLTILWLHSNV-LARID-AAAFTG--------------------------LALL 82 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSC-CCEEC-TTTTTT--------------------------CTTC
T ss_pred CCCCEEECcCCcCCCCCHHHhh-cccccccccccccc-ccccc-cccccc--------------------------cccc
Confidence 3567777777766544333344 55666666666554 22111 111123 3444
Q ss_pred cEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEE
Q 006015 383 TSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELD 462 (664)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~ 462 (664)
+.+.+..+..+.......+. ++++|++|+++++.+.......+...++|+.+++++| .++......+. .+++|+.|+
T Consensus 83 ~~l~~~~~~~~~~l~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~~f~-~~~~L~~L~ 159 (284)
T d1ozna_ 83 EQLDLSDNAQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFR-DLGNLTHLF 159 (284)
T ss_dssp CEEECCSCTTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTT-TCTTCCEEE
T ss_pred cccccccccccccccchhhc-ccccCCEEecCCcccccccccccchhcccchhhhccc-cccccChhHhc-cccchhhcc
Confidence 44444332222211111122 6677777777777666555566666777888888877 77654333333 677788888
Q ss_pred cCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccC
Q 006015 463 LYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKW 542 (664)
Q Consensus 463 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 542 (664)
+++|. ++. .....+.++++|+++.+++|. +++..+..+..+++|++|++++| .+... .+..+..+++|++|++++
T Consensus 160 l~~N~-l~~-l~~~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N-~i~~~-~~~~~~~~~~L~~L~l~~ 234 (284)
T d1ozna_ 160 LHGNR-ISS-VPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSAL-PTEALAPLRALQYLRLND 234 (284)
T ss_dssp CCSSC-CCE-ECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCC-CHHHHTTCTTCCEEECCS
T ss_pred cccCc-ccc-cchhhhccccccchhhhhhcc-ccccChhHhhhhhhccccccccc-ccccc-cccccccccccCEEEecC
Confidence 88776 542 122345567888888888887 77777778888889999999988 44442 556778889999999998
Q ss_pred ccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhh
Q 006015 543 CHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLA 580 (664)
Q Consensus 543 ~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 580 (664)
|+...+-....+. ..++.+....+++....|..+.
T Consensus 235 N~l~C~C~~~~l~---~~l~~~~~~~~~~~C~~p~~l~ 269 (284)
T d1ozna_ 235 NPWVCDCRARPLW---AWLQKFRGSSSEVPCSLPQRLA 269 (284)
T ss_dssp SCEECSGGGHHHH---HHHHHCCSEECCCBEEESGGGT
T ss_pred CCCCCCccchHHH---HHHHhCcCCCCceEeCCchHHc
Confidence 8765554443332 2344555556666655554443
No 14
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.50 E-value=2.1e-14 Score=130.29 Aligned_cols=185 Identities=19% Similarity=0.254 Sum_probs=79.3
Q ss_pred CCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCE
Q 006015 407 FLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEM 486 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (664)
+|++|++.++.+.+. ..+.++++|+.|++++| .+++.. .+. .+++|+.+.+++|. +++ +. .+.++++|+.
T Consensus 42 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n-~i~~~~--~l~-~l~~l~~l~~~~n~-~~~--i~-~l~~l~~L~~ 111 (227)
T d1h6ua2 42 GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN-QITDLA--PLK-NLTKITELELSGNP-LKN--VS-AIAGLQSIKT 111 (227)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCG--GGT-TCCSCCEEECCSCC-CSC--CG-GGTTCTTCCE
T ss_pred CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCc-eeeccc--ccc-cccccccccccccc-ccc--cc-cccccccccc
Confidence 444444444444331 23444444444444444 443321 122 44445555554443 221 11 1233455555
Q ss_pred EeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeee
Q 006015 487 INIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINL 566 (664)
Q Consensus 487 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l 566 (664)
+.+++|. ..+ ...+...+.++.+.++++. +... ..+.++++|+.|++++|. +.+.. + ...+++|++|++
T Consensus 112 l~l~~~~-~~~--~~~~~~~~~~~~l~~~~~~-~~~~---~~~~~~~~L~~L~l~~n~-~~~~~--~-l~~l~~L~~L~L 180 (227)
T d1h6ua2 112 LDLTSTQ-ITD--VTPLAGLSNLQVLYLDLNQ-ITNI---SPLAGLTNLQYLSIGNAQ-VSDLT--P-LANLSKLTTLKA 180 (227)
T ss_dssp EECTTSC-CCC--CGGGTTCTTCCEEECCSSC-CCCC---GGGGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEEC
T ss_pred ccccccc-ccc--cchhccccchhhhhchhhh-hchh---hhhccccccccccccccc-cccch--h-hcccccceeccc
Confidence 5555443 221 1223344455555555442 2110 112345555555555552 22111 1 123455555555
Q ss_pred ccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeeeh
Q 006015 567 SYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQA 618 (664)
Q Consensus 567 ~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~n 618 (664)
++|++++. ..+.++++|+.+++++|.++.+++ +.++++|+.|+++|
T Consensus 181 s~n~l~~l-----~~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 181 DDNKISDI-----SPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp CSSCCCCC-----GGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred CCCccCCC-----hhhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence 55555542 123344444455555555555543 33456666666553
No 15
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.49 E-value=3.3e-15 Score=142.92 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=35.8
Q ss_pred CCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCCCCCchhHHHHHhhCCCcc
Q 006015 278 GGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCDGVTDEGLSYVATKHRDLR 357 (664)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (664)
++|+.|+++++ ......+..+..++.++.|+++++.+....+..+. .+++|++|++++|. ++ .++..+..+++|+
T Consensus 171 ~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~-~l~~L~~L~L~~N~-L~--~lp~~l~~l~~L~ 245 (305)
T d1xkua_ 171 PSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNK-LV--KVPGGLADHKYIQ 245 (305)
T ss_dssp TTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSC-CS--SCCTTTTTCSSCC
T ss_pred CccCEEECCCC-cCCCCChhHhhcccccccccccccccccccccccc-ccccceeeeccccc-cc--ccccccccccCCC
Confidence 34444444444 22223334444555555555555544433333333 44555555555543 22 1222233444555
Q ss_pred EEecCCC
Q 006015 358 KLDITCC 364 (664)
Q Consensus 358 ~L~l~~~ 364 (664)
.|++++|
T Consensus 246 ~L~Ls~N 252 (305)
T d1xkua_ 246 VVYLHNN 252 (305)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 5555444
No 16
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.46 E-value=2.3e-15 Score=140.41 Aligned_cols=176 Identities=19% Similarity=0.229 Sum_probs=91.6
Q ss_pred CCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCE
Q 006015 407 FLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEM 486 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (664)
++++|++++|.+.......|.++++|+.|++++| .++... .+. .+++|++|++++|. ++. ....+..+++|+.
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~--~~~-~l~~L~~L~Ls~N~-l~~--~~~~~~~l~~L~~ 104 (266)
T d1p9ag_ 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQ--VDG-TLPVLGTLDLSHNQ-LQS--LPLLGQTLPALTV 104 (266)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEE--CCS-CCTTCCEEECCSSC-CSS--CCCCTTTCTTCCE
T ss_pred CCCEEECcCCcCCCcCHHHhhccccccccccccc-cccccc--ccc-cccccccccccccc-ccc--ccccccccccccc
Confidence 5666666666666655556666666666666666 555421 112 45566666666554 321 1222334455555
Q ss_pred EeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeee
Q 006015 487 INIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINL 566 (664)
Q Consensus 487 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l 566 (664)
|++++|. +.......+. .++++++|++++|. +..... .....+++|+.+++
T Consensus 105 L~l~~~~-~~~~~~~~~~--------------------------~l~~l~~L~l~~n~-l~~l~~-~~~~~l~~l~~l~l 155 (266)
T d1p9ag_ 105 LDVSFNR-LTSLPLGALR--------------------------GLGELQELYLKGNE-LKTLPP-GLLTPTPKLEKLSL 155 (266)
T ss_dssp EECCSSC-CCCCCSSTTT--------------------------TCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEEC
T ss_pred ccccccc-cceeeccccc--------------------------cccccccccccccc-cceecc-ccccccccchhccc
Confidence 5555544 3333333333 34455555555542 221110 01112456666666
Q ss_pred ccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCcccceeee-hhhc
Q 006015 567 SYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGGITKVKLQ-AAFK 621 (664)
Q Consensus 567 ~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~-n~~~ 621 (664)
++|++++..+.. +..+++|+.+++++|.++.+|+.++.+++|+.|+|+ |++.
T Consensus 156 ~~N~l~~~~~~~---~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 156 ANNNLTELPAGL---LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp TTSCCSCCCTTT---TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccccccccCccc---cccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence 666666544333 334445556666666666666666666677777776 5544
No 17
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}
Probab=99.43 E-value=1.5e-13 Score=124.65 Aligned_cols=186 Identities=19% Similarity=0.247 Sum_probs=109.1
Q ss_pred CCCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCC
Q 006015 379 CTGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKL 458 (664)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L 458 (664)
+.+|+.|++.+|.... +..+. .+++|++|++++|.+.+.. .+..+++|+.+++++| .+++. ..+. .+++|
T Consensus 40 l~~L~~L~l~~~~i~~---l~~l~-~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n-~~~~i--~~l~-~l~~L 109 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTT---IEGVQ-YLNNLIGLELKDNQITDLA--PLKNLTKITELELSGN-PLKNV--SAIA-GLQSI 109 (227)
T ss_dssp HHTCCEEECTTSCCCC---CTTGG-GCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSC-CCSCC--GGGT-TCTTC
T ss_pred cCCcCEEECCCCCCCc---chhHh-cCCCCcEeecCCceeeccc--cccccccccccccccc-ccccc--cccc-ccccc
Confidence 3455566665554321 11222 6677777777776665532 3666777777777776 55542 2333 56777
Q ss_pred cEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEE
Q 006015 459 KELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKL 538 (664)
Q Consensus 459 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L 538 (664)
+.+.+++|...... .+...+.++.+.++++. +.. ...+..+++|+.|.+++| .+++ .. .+.++++|++|
T Consensus 110 ~~l~l~~~~~~~~~----~~~~~~~~~~l~~~~~~-~~~--~~~~~~~~~L~~L~l~~n-~~~~--~~-~l~~l~~L~~L 178 (227)
T d1h6ua2 110 KTLDLTSTQITDVT----PLAGLSNLQVLYLDLNQ-ITN--ISPLAGLTNLQYLSIGNA-QVSD--LT-PLANLSKLTTL 178 (227)
T ss_dssp CEEECTTSCCCCCG----GGTTCTTCCEEECCSSC-CCC--CGGGGGCTTCCEEECCSS-CCCC--CG-GGTTCTTCCEE
T ss_pred cccccccccccccc----hhccccchhhhhchhhh-hch--hhhhcccccccccccccc-cccc--ch-hhcccccceec
Confidence 77777776632211 12345677777777765 442 223566777788888777 3333 11 25577888888
Q ss_pred eccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccC
Q 006015 539 DIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLK 594 (664)
Q Consensus 539 ~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~ 594 (664)
++++| .+++.. ....+++|++|++++|++++.. .+.++++|+.++++
T Consensus 179 ~Ls~n-~l~~l~---~l~~l~~L~~L~Ls~N~lt~i~-----~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 179 KADDN-KISDIS---PLASLPNLIEVHLKNNQISDVS-----PLANTSNLFIVTLT 225 (227)
T ss_dssp ECCSS-CCCCCG---GGGGCTTCCEEECTTSCCCBCG-----GGTTCTTCCEEEEE
T ss_pred ccCCC-ccCCCh---hhcCCCCCCEEECcCCcCCCCc-----ccccCCCCCEEEee
Confidence 88887 444422 1334788888888888887633 24455555566654
No 18
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.42 E-value=8.6e-15 Score=136.44 Aligned_cols=178 Identities=16% Similarity=0.047 Sum_probs=127.3
Q ss_pred CCCcEEEcCCCCCCCHHHHHHHHhhCCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCc
Q 006015 380 TGLTSLRMESCTLVPREAFVLIGQRCRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLK 459 (664)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~ 459 (664)
++++.|++++|.. +......+. .+++|++|++++|.++.. ..++.+++|+.|++++| .++.. ......+++|+
T Consensus 31 ~~l~~L~Ls~N~i-~~l~~~~f~-~l~~L~~L~L~~N~l~~l--~~~~~l~~L~~L~Ls~N-~l~~~--~~~~~~l~~L~ 103 (266)
T d1p9ag_ 31 KDTTILHLSENLL-YTFSLATLM-PYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHN-QLQSL--PLLGQTLPALT 103 (266)
T ss_dssp TTCCEEECTTSCC-SEEEGGGGT-TCTTCCEEECTTSCCCEE--ECCSCCTTCCEEECCSS-CCSSC--CCCTTTCTTCC
T ss_pred cCCCEEECcCCcC-CCcCHHHhh-cccccccccccccccccc--ccccccccccccccccc-ccccc--ccccccccccc
Confidence 5799999999765 322222333 899999999999998863 34567899999999999 77753 22334789999
Q ss_pred EEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEe
Q 006015 460 ELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLD 539 (664)
Q Consensus 460 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 539 (664)
.|+++++.... .....+..++++++|.+++|. ++......+..+++|+.+++++| .++.. .+..+..+++|++|+
T Consensus 104 ~L~l~~~~~~~--~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N-~l~~~-~~~~~~~l~~L~~L~ 178 (266)
T d1p9ag_ 104 VLDVSFNRLTS--LPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANN-NLTEL-PAGLLNGLENLDTLL 178 (266)
T ss_dssp EEECCSSCCCC--CCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTS-CCSCC-CTTTTTTCTTCCEEE
T ss_pred cccccccccce--eeccccccccccccccccccc-cceeccccccccccchhcccccc-ccccc-Cccccccccccceee
Confidence 99999987322 122334567899999999997 87777777778889999999998 55542 334566778888888
Q ss_pred ccCccccChhhHHHHHhcCcccCeeeeccCCCC
Q 006015 540 IKWCHNINDVGMLPLAHFSQNLRQINLSYTSVT 572 (664)
Q Consensus 540 l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~ 572 (664)
+++|+ ++... .....+++|+.|+|++|++.
T Consensus 179 Ls~N~-L~~lp--~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 179 LQENS-LYTIP--KGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CCSSC-CCCCC--TTTTTTCCCSEEECCSCCBC
T ss_pred cccCC-CcccC--hhHCCCCCCCEEEecCCCCC
Confidence 88883 44321 11223577788888877754
No 19
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.37 E-value=3.6e-13 Score=120.02 Aligned_cols=98 Identities=14% Similarity=0.119 Sum_probs=39.3
Q ss_pred CCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCE
Q 006015 407 FLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEM 486 (664)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 486 (664)
+|++|+++++.+.+. ..+..+++|+.|++++| .+++.. .+. .+++|+.|++++|. +++ ++ .+..+++|+.
T Consensus 47 ~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n-~i~~l~--~~~-~l~~L~~L~l~~n~-i~~--l~-~l~~l~~L~~ 116 (210)
T d1h6ta2 47 SIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN-KLTDIK--PLA-NLKNLGWLFLDENK-VKD--LS-SLKDLKKLKS 116 (210)
T ss_dssp TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCG--GGT-TCTTCCEEECCSSC-CCC--GG-GGTTCTTCCE
T ss_pred CccEEECcCCCCCCc--hhHhhCCCCCEEeCCCc-cccCcc--ccc-cCcccccccccccc-ccc--cc-cccccccccc
Confidence 444444444444331 12334444444444444 444321 111 34444444444443 321 11 1233444444
Q ss_pred EeccCCCCCCHHHHHhhhcCCCCCEEEccCC
Q 006015 487 INIAYLKDITDSSLLSLSKCSRLNTFESRGC 517 (664)
Q Consensus 487 L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~ 517 (664)
|++++|. +.. ...+..+++++.+++++|
T Consensus 117 L~l~~~~-~~~--~~~l~~l~~l~~l~~~~n 144 (210)
T d1h6ta2 117 LSLEHNG-ISD--INGLVHLPQLESLYLGNN 144 (210)
T ss_dssp EECTTSC-CCC--CGGGGGCTTCCEEECCSS
T ss_pred ccccccc-ccc--cccccccccccccccccc
Confidence 4444443 221 123334444444444444
No 20
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.37 E-value=1.6e-13 Score=122.26 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=129.4
Q ss_pred cCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCC
Q 006015 428 RCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCS 507 (664)
Q Consensus 428 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~ 507 (664)
.+.+|+.|++++| .+++.. .+ +.+++|++|++++|. +++ +.. +..+++|++|++++|. +++. ..+..++
T Consensus 44 ~L~~L~~L~l~~~-~i~~l~--~l-~~l~~L~~L~L~~n~-i~~--l~~-~~~l~~L~~L~l~~n~-i~~l--~~l~~l~ 112 (210)
T d1h6ta2 44 ELNSIDQIIANNS-DIKSVQ--GI-QYLPNVTKLFLNGNK-LTD--IKP-LANLKNLGWLFLDENK-VKDL--SSLKDLK 112 (210)
T ss_dssp HHHTCCEEECTTS-CCCCCT--TG-GGCTTCCEEECCSSC-CCC--CGG-GTTCTTCCEEECCSSC-CCCG--GGGTTCT
T ss_pred HhcCccEEECcCC-CCCCch--hH-hhCCCCCEEeCCCcc-ccC--ccc-cccCcccccccccccc-cccc--ccccccc
Confidence 3568999999999 877632 33 379999999999997 654 222 3678999999999997 8753 3688899
Q ss_pred CCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCccccc
Q 006015 508 RLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQN 587 (664)
Q Consensus 508 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~ 587 (664)
+|+.|++++|. +.. + ..+.+++.++.+++++| .+++.. ....+++|+.+++++|++++. ..+.++++
T Consensus 113 ~L~~L~l~~~~-~~~--~-~~l~~l~~l~~l~~~~n-~l~~~~---~~~~l~~L~~l~l~~n~l~~i-----~~l~~l~~ 179 (210)
T d1h6ta2 113 KLKSLSLEHNG-ISD--I-NGLVHLPQLESLYLGNN-KITDIT---VLSRLTKLDTLSLEDNQISDI-----VPLAGLTK 179 (210)
T ss_dssp TCCEEECTTSC-CCC--C-GGGGGCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSSCCCCC-----GGGTTCTT
T ss_pred ccccccccccc-ccc--c-ccccccccccccccccc-cccccc---ccccccccccccccccccccc-----ccccCCCC
Confidence 99999999994 333 2 24668999999999999 444432 234489999999999999873 33667778
Q ss_pred ceeeccCCCCHHHHHHHHHhCCcccceeeeh
Q 006015 588 MTILHLKGLSLNGLAAALLACGGITKVKLQA 618 (664)
Q Consensus 588 L~~l~l~~n~~~~~~~~~~~~~~L~~l~l~n 618 (664)
|+.+++++|.++.++ .+.++++|+.|+|++
T Consensus 180 L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 180 LQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred CCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence 889999999998876 366699999999875
No 21
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.37 E-value=9e-13 Score=116.31 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=84.0
Q ss_pred CCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCC
Q 006015 405 CRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDL 484 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (664)
++++++|+++++.+.+. ..+..+++|++|++++| .+++.. .+. .+++|++|++++|.... +. .+.++++|
T Consensus 39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N-~l~~~~--~l~-~l~~L~~L~l~~n~~~~---~~-~l~~l~~L 108 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDIT--PLK-NLTKLVDILMNNNQIAD---IT-PLANLTNL 108 (199)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSS-CCCCCG--GGT-TCTTCCEEECCSSCCCC---CG-GGTTCTTC
T ss_pred hcCCCEEECCCCCCCCc--cccccCCCcCcCccccc-cccCcc--ccc-CCccccccccccccccc---cc-cccccccc
Confidence 45666666666655542 33555666777777766 665532 233 56667777776665222 11 13456677
Q ss_pred CEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCee
Q 006015 485 EMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQI 564 (664)
Q Consensus 485 ~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L 564 (664)
+.|++++|. ... ...+..+++|+.|++++| .+.. ++ .+..+++|++|++.+| .+++.. + ...+++|++|
T Consensus 109 ~~L~l~~~~-~~~--~~~~~~l~~L~~L~l~~n-~l~~--~~-~l~~~~~L~~L~l~~n-~l~~l~--~-l~~l~~L~~L 177 (199)
T d2omxa2 109 TGLTLFNNQ-ITD--IDPLKNLTNLNRLELSSN-TISD--IS-ALSGLTSLQQLNFSSN-QVTDLK--P-LANLTTLERL 177 (199)
T ss_dssp SEEECCSSC-CCC--CGGGTTCTTCSEEECCSS-CCCC--CG-GGTTCTTCSEEECCSS-CCCCCG--G-GTTCTTCCEE
T ss_pred ccccccccc-ccc--ccccchhhhhHHhhhhhh-hhcc--cc-cccccccccccccccc-cccCCc--c-ccCCCCCCEE
Confidence 777776665 332 223556667777777766 3333 22 2456667777777776 333321 1 2346777777
Q ss_pred eeccCCCCh
Q 006015 565 NLSYTSVTD 573 (664)
Q Consensus 565 ~l~~n~l~~ 573 (664)
++++|++++
T Consensus 178 ~ls~N~i~~ 186 (199)
T d2omxa2 178 DISSNKVSD 186 (199)
T ss_dssp ECCSSCCCC
T ss_pred ECCCCCCCC
Confidence 777777765
No 22
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}
Probab=99.35 E-value=1.9e-13 Score=120.75 Aligned_cols=163 Identities=17% Similarity=0.196 Sum_probs=120.8
Q ss_pred ccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcC
Q 006015 427 SRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKC 506 (664)
Q Consensus 427 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~ 506 (664)
..+++++.|+++++ .+++. ..+. .+++|++|++++|. +++ +.. +.++++|++|++++|. +... ..+..+
T Consensus 37 ~~l~~l~~L~l~~~-~i~~l--~~l~-~l~nL~~L~Ls~N~-l~~--~~~-l~~l~~L~~L~l~~n~-~~~~--~~l~~l 105 (199)
T d2omxa2 37 TDLDQVTTLQADRL-GIKSI--DGVE-YLNNLTQINFSNNQ-LTD--ITP-LKNLTKLVDILMNNNQ-IADI--TPLANL 105 (199)
T ss_dssp HHHTTCCEEECTTS-CCCCC--TTGG-GCTTCCEEECCSSC-CCC--CGG-GTTCTTCCEEECCSSC-CCCC--GGGTTC
T ss_pred HHhcCCCEEECCCC-CCCCc--cccc-cCCCcCcCcccccc-ccC--ccc-ccCCcccccccccccc-cccc--cccccc
Confidence 34678999999999 78763 3333 78999999999987 653 222 5788999999999987 5533 347789
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccc
Q 006015 507 SRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQ 586 (664)
Q Consensus 507 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 586 (664)
++|+.|++++|..... ..+.++++|+.|++++|+ +... +....+++|+.|++.+|++++. ..+.+++
T Consensus 106 ~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~n~-l~~~---~~l~~~~~L~~L~l~~n~l~~l-----~~l~~l~ 172 (199)
T d2omxa2 106 TNLTGLTLFNNQITDI----DPLKNLTNLNRLELSSNT-ISDI---SALSGLTSLQQLNFSSNQVTDL-----KPLANLT 172 (199)
T ss_dssp TTCSEEECCSSCCCCC----GGGTTCTTCSEEECCSSC-CCCC---GGGTTCTTCSEEECCSSCCCCC-----GGGTTCT
T ss_pred cccccccccccccccc----cccchhhhhHHhhhhhhh-hccc---ccccccccccccccccccccCC-----ccccCCC
Confidence 9999999999855432 235678999999999984 4332 2234478999999999998873 3356677
Q ss_pred cceeeccCCCCHHHHHHHHHhCCcccce
Q 006015 587 NMTILHLKGLSLNGLAAALLACGGITKV 614 (664)
Q Consensus 587 ~L~~l~l~~n~~~~~~~~~~~~~~L~~l 614 (664)
+|+.+++++|.++.++ .+.++++|+.|
T Consensus 173 ~L~~L~ls~N~i~~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 173 TLERLDISSNKVSDIS-VLAKLTNLESL 199 (199)
T ss_dssp TCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred CCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence 7778899999988775 35557887765
No 23
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.22 E-value=6e-11 Score=115.63 Aligned_cols=56 Identities=18% Similarity=0.308 Sum_probs=29.6
Q ss_pred CCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCCh
Q 006015 506 CSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTD 573 (664)
Q Consensus 506 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~ 573 (664)
+++|++|++++| .++. ++ ..+++|++|++++| .++... ..+++|++|++++|+++.
T Consensus 283 ~~~L~~L~Ls~N-~l~~--lp---~~~~~L~~L~L~~N-~L~~l~-----~~~~~L~~L~L~~N~L~~ 338 (353)
T d1jl5a_ 283 PPSLEELNVSNN-KLIE--LP---ALPPRLERLIASFN-HLAEVP-----ELPQNLKQLHVEYNPLRE 338 (353)
T ss_dssp CTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSS-CCSCCC-----CCCTTCCEEECCSSCCSS
T ss_pred CCCCCEEECCCC-ccCc--cc---cccCCCCEEECCCC-cCCccc-----cccCCCCEEECcCCcCCC
Confidence 456666666666 3332 22 13456666666666 333321 124566666666666554
No 24
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.13 E-value=1.4e-11 Score=74.92 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=35.1
Q ss_pred cccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhh
Q 006015 13 FDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKH 52 (664)
Q Consensus 13 ~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~ 52 (664)
++.||+||+.+||+ ||+ .+|+.++++|||+|++++...
T Consensus 1 f~~LP~eil~~If~-~L~-~~dl~~~~~Vcr~w~~l~~~~ 38 (41)
T d1fs1a1 1 WDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASDE 38 (41)
T ss_dssp CCSSCHHHHHHHHT-TSC-GGGHHHHHTTCHHHHHHHTCG
T ss_pred CCcCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhCCc
Confidence 57899999999999 999 999999999999999997643
No 25
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}
Probab=99.11 E-value=1.4e-10 Score=112.88 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=37.4
Q ss_pred CCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCC
Q 006015 454 CCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCK 533 (664)
Q Consensus 454 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 533 (664)
.+++|++|++++|. ++. ++ ..+++|+.|++++|. +++.. ..+++|++|++++|+ ++. ++. -..
T Consensus 282 ~~~~L~~L~Ls~N~-l~~--lp---~~~~~L~~L~L~~N~-L~~l~----~~~~~L~~L~L~~N~-L~~--lp~---~~~ 344 (353)
T d1jl5a_ 282 LPPSLEELNVSNNK-LIE--LP---ALPPRLERLIASFNH-LAEVP----ELPQNLKQLHVEYNP-LRE--FPD---IPE 344 (353)
T ss_dssp CCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSC-CSS--CCC---CCT
T ss_pred cCCCCCEEECCCCc-cCc--cc---cccCCCCEEECCCCc-CCccc----cccCCCCEEECcCCc-CCC--CCc---ccc
Confidence 34666666666665 331 11 234667777776665 55321 124567777777773 443 221 123
Q ss_pred cCcEEecc
Q 006015 534 QLIKLDIK 541 (664)
Q Consensus 534 ~L~~L~l~ 541 (664)
+|+.|.+.
T Consensus 345 ~L~~L~~~ 352 (353)
T d1jl5a_ 345 SVEDLRMN 352 (353)
T ss_dssp TCCEEECC
T ss_pred ccCeeECc
Confidence 56666553
No 26
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.09 E-value=6.7e-12 Score=105.70 Aligned_cols=14 Identities=21% Similarity=0.138 Sum_probs=6.0
Q ss_pred hcCCCCCEEEccCC
Q 006015 504 SKCSRLNTFESRGC 517 (664)
Q Consensus 504 ~~~~~L~~L~l~~~ 517 (664)
..+++|++|++++|
T Consensus 60 ~~l~~L~~L~ls~N 73 (162)
T d1a9na_ 60 PLLRRLKTLLVNNN 73 (162)
T ss_dssp CCCSSCCEEECCSS
T ss_pred ccCcchhhhhcccc
Confidence 33444444444444
No 27
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.07 E-value=1.6e-11 Score=103.37 Aligned_cols=105 Identities=15% Similarity=0.035 Sum_probs=44.6
Q ss_pred CCCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCC
Q 006015 405 CRFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDL 484 (664)
Q Consensus 405 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 484 (664)
+..+++|++++|+++.. ...+..+++|+.|++++| .++.. ..+. .+++|++|++++|. ++.. ....+..+++|
T Consensus 17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N-~i~~l--~~~~-~l~~L~~L~ls~N~-i~~l-~~~~~~~l~~L 89 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDN-EIRKL--DGFP-LLRRLKTLLVNNNR-ICRI-GEGLDQALPDL 89 (162)
T ss_dssp TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSS-CCCEE--CCCC-CCSSCCEEECCSSC-CCEE-CSCHHHHCTTC
T ss_pred cCcCcEEECCCCCCCcc-CccccccccCCEEECCCC-CCCcc--CCcc-cCcchhhhhccccc-ccCC-Ccccccccccc
Confidence 34555555555555443 122233455555555555 44432 1122 44455555555544 3210 01122334445
Q ss_pred CEEeccCCCCCCHH-HHHhhhcCCCCCEEEccCC
Q 006015 485 EMINIAYLKDITDS-SLLSLSKCSRLNTFESRGC 517 (664)
Q Consensus 485 ~~L~l~~~~~l~~~-~~~~l~~~~~L~~L~l~~~ 517 (664)
++|++++|. +++. ....+..+++|++|++++|
T Consensus 90 ~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N 122 (162)
T d1a9na_ 90 TELILTNNS-LVELGDLDPLASLKSLTYLCILRN 122 (162)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSS
T ss_pred ccceecccc-ccccccccccccccccchhhcCCC
Confidence 555554444 3322 1233344444444444444
No 28
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.03 E-value=3.3e-12 Score=111.85 Aligned_cols=154 Identities=15% Similarity=0.041 Sum_probs=80.4
Q ss_pred CCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCCEEeccCCCCCCHHHHHhhhcCCCC
Q 006015 430 SKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLEMINIAYLKDITDSSLLSLSKCSRL 509 (664)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L 509 (664)
+++++|+|++| .++..........+++|++|++++|. +.. .....+..+++|++|++++|. ++......|.++++|
T Consensus 29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~-~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L 104 (192)
T d1w8aa_ 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTG-IEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQL 104 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCC-BCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTC
T ss_pred CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc-ccc-ccccccccccccceeeecccc-ccccCHHHHhCCCcc
Confidence 45566666666 55432222222255666666666655 321 122334455666677776665 666556666667777
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccce
Q 006015 510 NTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMT 589 (664)
Q Consensus 510 ~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~ 589 (664)
++|+|++| .++.. .+..+..+++|++|++++|+...+.....+. ..++.+.+..+.++...| ..++.+.
T Consensus 105 ~~L~L~~N-~l~~i-~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~---~~l~~~~l~~~~~~c~~p------~~l~~~~ 173 (192)
T d1w8aa_ 105 KTLNLYDN-QISCV-MPGSFEHLNSLTSLNLASNPFNCNCHLAWFA---EWLRKKSLNGGAARCGAP------SKVRDVQ 173 (192)
T ss_dssp CEEECCSS-CCCEE-CTTSSTTCTTCCEEECTTCCBCCSGGGHHHH---HHHHHHCCSGGGCBBCSS------TTTTTSB
T ss_pred cccccCCc-ccccc-CHHHhcCCcccccccccccccccccchHHHh---hhhhhhcccCCCeEeCCC------hhhcCCE
Confidence 77777777 44442 2344556677777777777543333333222 224444555555543222 2334444
Q ss_pred eeccCCCCH
Q 006015 590 ILHLKGLSL 598 (664)
Q Consensus 590 ~l~l~~n~~ 598 (664)
+.+++.|.+
T Consensus 174 l~~L~~n~l 182 (192)
T d1w8aa_ 174 IKDLPHSEF 182 (192)
T ss_dssp GGGSCTTTC
T ss_pred eeecCHhhC
Confidence 555555544
No 29
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=98.97 E-value=1e-10 Score=93.21 Aligned_cols=88 Identities=14% Similarity=0.150 Sum_probs=35.5
Q ss_pred hhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCC
Q 006015 503 LSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASI 582 (664)
Q Consensus 503 l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 582 (664)
+..+++|++|++++| .++. ++..+..+++|+.|++++| .++... ....+++|+.|++++|++++... +..+
T Consensus 16 l~~l~~L~~L~ls~N-~l~~--lp~~~~~l~~L~~L~l~~N-~i~~l~---~~~~l~~L~~L~l~~N~i~~~~~--~~~l 86 (124)
T d1dcea3 16 LEQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDN-ALENVD---GVANLPRLQELLLCNNRLQQSAA--IQPL 86 (124)
T ss_dssp GGGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCCCG---GGTTCSSCCEEECCSSCCCSSST--TGGG
T ss_pred cccCCCCCEEECCCC-ccCc--chhhhhhhhcccccccccc-cccccC---ccccccccCeEECCCCccCCCCC--chhh
Confidence 344444444444444 3332 2223344444444444444 222211 11224455555555555443211 1223
Q ss_pred cccccceeeccCCCCHH
Q 006015 583 SCLQNMTILHLKGLSLN 599 (664)
Q Consensus 583 ~~L~~L~~l~l~~n~~~ 599 (664)
..+++|+.+++++|.++
T Consensus 87 ~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 87 VSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp GGCTTCCEEECTTSGGG
T ss_pred cCCCCCCEEECCCCcCC
Confidence 33344444455555443
No 30
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.97 E-value=3.4e-12 Score=116.97 Aligned_cols=201 Identities=12% Similarity=0.026 Sum_probs=102.1
Q ss_pred CCCCEEEccCCCCChhhHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCCCCC
Q 006015 406 RFLEELDLTDNEIDDEGLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCPDLE 485 (664)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 485 (664)
+++++|++++|.+......+|.++++|++|++++| .+...........++.++++.+..+..++. .....+.++++|+
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n-~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l~~L~ 106 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQ 106 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESC-TTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEECCTTCC
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhccc-cccceeeccccccccccccccccccccccc-ccccccccccccc
Confidence 46778888887777655556777778888888777 544322121222567777777765544442 1123345667777
Q ss_pred EEeccCCCCCCHHHH-HhhhcCCCCCEEEccCCCCCCHHHHHHHHhcC-CcCcEEeccCccccChhhHHHHHhcCcccCe
Q 006015 486 MINIAYLKDITDSSL-LSLSKCSRLNTFESRGCPLITSLGLAAIAVGC-KQLIKLDIKWCHNINDVGMLPLAHFSQNLRQ 563 (664)
Q Consensus 486 ~L~l~~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~ 563 (664)
++++++|. ++.... ..+..+..+..+...++ .+... ....+.++ ..++.|++++| .++.... .....+++..
T Consensus 107 ~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~-~l~~i-~~~~~~~~~~~l~~L~l~~n-~l~~i~~--~~~~~~~l~~ 180 (242)
T d1xwdc1 107 YLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNI-NIHTI-ERNSFVGLSFESVILWLNKN-GIQEIHN--CAFNGTQLDE 180 (242)
T ss_dssp EEEEESCC-CCSCCCCTTTCBSSCEEEEEESCT-TCCEE-CTTSSTTSBSSCEEEECCSS-CCCEECT--TTTTTCCEEE
T ss_pred ccccchhh-hccccccccccccccccccccccc-ccccc-cccccccccccceeeecccc-ccccccc--ccccchhhhc
Confidence 77777765 543221 11222333433343433 33221 01112222 25666666666 3332221 1112344444
Q ss_pred e-eeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCcccceeee
Q 006015 564 I-NLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGGITKVKLQ 617 (664)
Q Consensus 564 L-~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~L~~l~l~ 617 (664)
+ ++.+|+++...+.. +.++++|+.+++++|.++.+|+..+. +++|+.+++.
T Consensus 181 ~~~l~~n~l~~l~~~~---f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~ 233 (242)
T d1xwdc1 181 LNLSDNNNLEELPNDV---FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233 (242)
T ss_dssp EECTTCTTCCCCCTTT---TTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred cccccccccccccHHH---hcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence 4 34555555432221 44455555666666666666554333 5555555544
No 31
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=98.92 E-value=8.3e-11 Score=93.70 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=4.1
Q ss_pred cccCeeeeccC
Q 006015 559 QNLRQINLSYT 569 (664)
Q Consensus 559 ~~L~~L~l~~n 569 (664)
++|+.|++++|
T Consensus 90 ~~L~~L~l~~N 100 (124)
T d1dcea3 90 PRLVLLNLQGN 100 (124)
T ss_dssp TTCCEEECTTS
T ss_pred CCCCEEECCCC
Confidence 33333333333
No 32
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=98.91 E-value=2.1e-11 Score=106.63 Aligned_cols=126 Identities=18% Similarity=0.176 Sum_probs=68.2
Q ss_pred HhcCCCCCEEeccCCCCCCHHHHHhhhcCCCCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhc
Q 006015 478 ACGCPDLEMINIAYLKDITDSSLLSLSKCSRLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHF 557 (664)
Q Consensus 478 ~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~ 557 (664)
+..+++|++|++++|. +++. ..+..+++|+.|++++| .++. ++.....+++|+.|++++| .++.. +....
T Consensus 44 l~~L~~L~~L~Ls~n~-I~~i--~~l~~l~~L~~L~Ls~N-~i~~--i~~~~~~~~~L~~L~l~~N-~i~~l---~~~~~ 113 (198)
T d1m9la_ 44 LSTLKACKHLALSTNN-IEKI--SSLSGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYN-QIASL---SGIEK 113 (198)
T ss_dssp HHHTTTCCEEECSEEE-ESCC--CCHHHHTTCCEEECCEE-EECS--CSSHHHHHHHCCEEECSEE-ECCCH---HHHHH
T ss_pred HhcccccceeECcccC-CCCc--ccccCCccccChhhccc-cccc--ccccccccccccccccccc-ccccc---ccccc
Confidence 3445666666666655 5432 23555666666666666 3333 2223333456677777766 33332 11223
Q ss_pred CcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHH-----------HHHhCCccccee
Q 006015 558 SQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAA-----------ALLACGGITKVK 615 (664)
Q Consensus 558 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~-----------~~~~~~~L~~l~ 615 (664)
+++|+.|++++|++++... +..+.++++|+.+++++|.+...+. .+..+|+|+.||
T Consensus 114 l~~L~~L~L~~N~i~~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 114 LVNLRVLYMSNNKITNWGE--IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEECCCHHH--HHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccccchhccccc--cccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 5667777777777665322 1223444455566666666554332 234589999888
No 33
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.89 E-value=1.3e-11 Score=112.93 Aligned_cols=182 Identities=13% Similarity=0.042 Sum_probs=93.4
Q ss_pred hCCCCCEEEccCCCCChh-hHHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCChHHHHHHHhcCC
Q 006015 404 RCRFLEELDLTDNEIDDE-GLKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITDSGILTIACGCP 482 (664)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 482 (664)
++++|++|++++|.+... ...++..+++++.+.+..+..+.......+. .+++|++++++++. ++..........++
T Consensus 51 ~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~-~l~~L~~l~l~~~~-l~~~~~~~~~~~l~ 128 (242)
T d1xwdc1 51 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-NLPNLQYLLISNTG-IKHLPDVHKIHSLQ 128 (242)
T ss_dssp TCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEE-CCTTCCEEEEESCC-CCSCCCCTTTCBSS
T ss_pred ccchhhhhhhccccccceeecccccccccccccccccccccccccccccc-ccccccccccchhh-hccccccccccccc
Confidence 556666666666555432 2334555666666665543344443322222 56666666666654 33211111112223
Q ss_pred CCCEEeccCCCCCCHHHHHhhhcCC-CCCEEEccCCCCCCHHHHHHHHhcCCcCcEEeccCccccChhhHHHHHhcCccc
Q 006015 483 DLEMINIAYLKDITDSSLLSLSKCS-RLNTFESRGCPLITSLGLAAIAVGCKQLIKLDIKWCHNINDVGMLPLAHFSQNL 561 (664)
Q Consensus 483 ~L~~L~l~~~~~l~~~~~~~l~~~~-~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L 561 (664)
.+..+...++. +.......+..++ .++.|++++| .++. ++......+++.++...++..++..... ...++++|
T Consensus 129 ~l~~~~~~n~~-l~~i~~~~~~~~~~~l~~L~l~~n-~l~~--i~~~~~~~~~l~~~~~l~~n~l~~l~~~-~f~~l~~L 203 (242)
T d1xwdc1 129 KVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKN-GIQE--IHNCAFNGTQLDELNLSDNNNLEELPND-VFHGASGP 203 (242)
T ss_dssp CEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSS-CCCE--ECTTTTTTCCEEEEECTTCTTCCCCCTT-TTTTSCCC
T ss_pred ccccccccccc-cccccccccccccccceeeecccc-cccc--cccccccchhhhccccccccccccccHH-HhcCCCCC
Confidence 33333334433 5544444444443 6777787776 4443 2222334556666654444355443221 12347899
Q ss_pred CeeeeccCCCChhHHHHhhCCcccccceeeccCC
Q 006015 562 RQINLSYTSVTDVGLLSLASISCLQNMTILHLKG 595 (664)
Q Consensus 562 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~ 595 (664)
+.|++++|+++...+. .+.++++|+.+++.+
T Consensus 204 ~~L~Ls~N~l~~l~~~---~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 204 VILDISRTRIHSLPSY---GLENLKKLRARSTYN 234 (242)
T ss_dssp SEEECTTSCCCCCCSS---SCTTCCEEESSSEES
T ss_pred CEEECCCCcCCccCHH---HHcCCcccccCcCCC
Confidence 9999999988864432 356666666666544
No 34
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=98.72 E-value=1.8e-09 Score=93.98 Aligned_cols=110 Identities=20% Similarity=0.209 Sum_probs=54.8
Q ss_pred HHHHhcCCCcEEEccCccccChHHHHHHHhcCCCcceEeccccCCcChhHHHHHHHcCCcCcEEeccCCCCCCchhhhhc
Q 006015 144 AALAEAKNLEKLWMGRCKMVTDMGVGCIAVGCKNLKLISLKWCLGVGDLGVGLIAVKCKEIRSLDLSYLPITNKCLPSIL 223 (664)
Q Consensus 144 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 223 (664)
..+..+++|++|++++|. +++. .. ...+++|++|++++| .+...+.. ...+++|+.|++++|.++. ...+.
T Consensus 42 ~sl~~L~~L~~L~Ls~n~-I~~i--~~-l~~l~~L~~L~Ls~N-~i~~i~~~--~~~~~~L~~L~l~~N~i~~--l~~~~ 112 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNN-IEKI--SS-LSGMENLRILSLGRN-LIKKIENL--DAVADTLEELWISYNQIAS--LSGIE 112 (198)
T ss_dssp HHHHHTTTCCEEECSEEE-ESCC--CC-HHHHTTCCEEECCEE-EECSCSSH--HHHHHHCCEEECSEEECCC--HHHHH
T ss_pred hHHhcccccceeECcccC-CCCc--cc-ccCCccccChhhccc-cccccccc--ccccccccccccccccccc--ccccc
Confidence 345555555555555554 3322 11 122555555555555 23332211 1133456666666665553 23355
Q ss_pred cCCCcceEeccCCCCCCHHHHHHHHHcCCCCCEEeccCCC
Q 006015 224 KLQHLEDLILEGCFGIDDCSLAALKHRCKSLKALDMSSCQ 263 (664)
Q Consensus 224 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (664)
.+++|+.|++++|.......+..+.. +++|+.|++++|+
T Consensus 113 ~l~~L~~L~L~~N~i~~~~~~~~l~~-l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 113 KLVNLRVLYMSNNKITNWGEIDKLAA-LDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTT-TTTCSEEEECSSH
T ss_pred ccccccccccccchhccccccccccC-CCccceeecCCCc
Confidence 56666666666655444333344444 6666666666654
No 35
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=98.69 E-value=1.8e-09 Score=93.97 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=28.9
Q ss_pred cCCCcEeecCCCCCCcHhHHHHhhcCCCccEEEecCCccCHhHHHHHHhcCCCccEEEcCCCC
Q 006015 277 IGGLQQLTLAHGSPVTLSIANGLKKLSMLQSIKLDGSVVTRAGLKAIGDWCVSLKELSLSKCD 339 (664)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 339 (664)
+++|+.|+++++ .+....+..|.++++|++|+|++|.+....+..+. .+++|++|++++++
T Consensus 77 ~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~-~l~~L~~l~L~~N~ 137 (192)
T d1w8aa_ 77 ASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE-HLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST-TCTTCCEEECTTCC
T ss_pred ccccceeeeccc-cccccCHHHHhCCCcccccccCCccccccCHHHhc-CCcccccccccccc
Confidence 344444444444 33333334455555555666655555443333333 44555555555544
No 36
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.64 E-value=2.5e-09 Score=80.97 Aligned_cols=41 Identities=20% Similarity=0.041 Sum_probs=38.1
Q ss_pred ccccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhh
Q 006015 10 INLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKH 52 (664)
Q Consensus 10 ~~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~ 52 (664)
.|.++.||+||+.+||+ ||+ .+++.++++|||+|+.++...
T Consensus 3 ~D~~~~LP~Ell~~I~s-~Ld-~~dL~~~s~Vcr~W~~~~~~d 43 (100)
T d1nexb1 3 RDLITSLPFEISLKIFN-YLQ-FEDIINSLGVSQNWNKIIRKS 43 (100)
T ss_dssp CCHHHHSCHHHHHHHHT-TSC-HHHHHHHTTTCHHHHHHHHTC
T ss_pred CCchhhCCHHHHHHHHH-CCC-HHHHHHHHHHHHHHHHHHHCC
Confidence 58999999999999999 999 999999999999999997643
No 37
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=98.62 E-value=3.2e-07 Score=76.96 Aligned_cols=94 Identities=18% Similarity=0.236 Sum_probs=46.4
Q ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHh---hCCCCCEEEccCCCCChhhHHhhc----cCCCccEEcccCCCCCC
Q 006015 372 ITHVTSSCTGLTSLRMESCTLVPREAFVLIGQ---RCRFLEELDLTDNEIDDEGLKSIS----RCSKLSVLKLGICLNIT 444 (664)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~ 444 (664)
+..+..+.++|++|+++++..+++.++..++. ..++|++|++++|.+++.+...++ ..+.|+.|++++| .++
T Consensus 7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~ 85 (167)
T d1pgva_ 7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLT 85 (167)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCC
T ss_pred HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcc
Confidence 34444455666666666544455555444332 334555555555555554433322 2455555555555 555
Q ss_pred hHhHHHHhh---CCCCCcEEEcCCC
Q 006015 445 GEGLAHVGM---CCSKLKELDLYRC 466 (664)
Q Consensus 445 ~~~~~~l~~---~~~~L~~L~l~~~ 466 (664)
+.+...+++ ..++|++|+++++
T Consensus 86 ~~g~~~l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 86 PELLARLLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred hHHHHHHHHHHHhCCcCCEEECCCC
Confidence 555444432 2244555555543
No 38
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=98.60 E-value=4.4e-07 Score=76.07 Aligned_cols=94 Identities=17% Similarity=0.264 Sum_probs=46.5
Q ss_pred HHHHhhCCCCCcEEEcCCCCCCChHHHHHH---HhcCCCCCEEeccCCCCCCHHHHHhhh----cCCCCCEEEccCCCCC
Q 006015 448 LAHVGMCCSKLKELDLYRCVGITDSGILTI---ACGCPDLEMINIAYLKDITDSSLLSLS----KCSRLNTFESRGCPLI 520 (664)
Q Consensus 448 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~~~l 520 (664)
+..+..+.+.|++|+++++..++++++..+ +...+.|++|++++|. +++.....+. ..+.|++|++++| .+
T Consensus 7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n-~i 84 (167)
T d1pgva_ 7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN-FL 84 (167)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-BC
T ss_pred HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehh-hc
Confidence 344444556666666665444555544333 2334556666666655 5554443332 3455555555555 45
Q ss_pred CHHHHHHH---HhcCCcCcEEeccCc
Q 006015 521 TSLGLAAI---AVGCKQLIKLDIKWC 543 (664)
Q Consensus 521 ~~~~~~~~---~~~~~~L~~L~l~~~ 543 (664)
++.++..+ +...++|++|++++|
T Consensus 85 ~~~g~~~l~~aL~~n~sL~~L~l~~n 110 (167)
T d1pgva_ 85 TPELLARLLRSTLVTQSIVEFKADNQ 110 (167)
T ss_dssp CHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred chHHHHHHHHHHHhCCcCCEEECCCC
Confidence 54443332 223344555555544
No 39
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=98.54 E-value=1.4e-06 Score=73.13 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=30.7
Q ss_pred HHhhCCCCCcEEEcCCCCCCChHHHHHHHh---cCCCCCEEeccCCCCCCHHHHHhhh----cCCCCCEEEccCC
Q 006015 450 HVGMCCSKLKELDLYRCVGITDSGILTIAC---GCPDLEMINIAYLKDITDSSLLSLS----KCSRLNTFESRGC 517 (664)
Q Consensus 450 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~l~~~~~~~l~----~~~~L~~L~l~~~ 517 (664)
.+..+.|.|++|+++++..+++.++..++. .+++|++|++++|. +++.....+. ..++++.+++++|
T Consensus 11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~ 84 (166)
T d1io0a_ 11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 84 (166)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccc
Confidence 333344555555555544455444333332 34455555555554 5444433322 2344555555544
No 40
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=98.53 E-value=1.5e-06 Score=72.85 Aligned_cols=120 Identities=11% Similarity=0.167 Sum_probs=59.9
Q ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHh---hCCCCCEEEccCCCCChhhHHhhc----cCCCccEEcccCCCCCC
Q 006015 372 ITHVTSSCTGLTSLRMESCTLVPREAFVLIGQ---RCRFLEELDLTDNEIDDEGLKSIS----RCSKLSVLKLGICLNIT 444 (664)
Q Consensus 372 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~ 444 (664)
+..+..+.++|++|+++++..+++.++..++. ..++|++|++++|.+++.+...++ ..+.++.+++++| .++
T Consensus 9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~-~~~ 87 (166)
T d1io0a_ 9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FIS 87 (166)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCC
T ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc-ccc
Confidence 34444455666666666555555555554442 345566666666665555443332 2455666666655 555
Q ss_pred hHhHHHHhh---CCCCCcEEEcCCCC-CCChHH---HHHHHhcCCCCCEEeccCC
Q 006015 445 GEGLAHVGM---CCSKLKELDLYRCV-GITDSG---ILTIACGCPDLEMINIAYL 492 (664)
Q Consensus 445 ~~~~~~l~~---~~~~L~~L~l~~~~-~~~~~~---~~~~~~~~~~L~~L~l~~~ 492 (664)
+.+...+.+ ..++|+.++++.+. .+++.+ +...+..++.|+.|++..+
T Consensus 88 ~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~ 142 (166)
T d1io0a_ 88 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 142 (166)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence 555544432 33555554443321 244433 2233334555555555443
No 41
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.49 E-value=1.6e-08 Score=77.12 Aligned_cols=44 Identities=18% Similarity=0.349 Sum_probs=40.2
Q ss_pred cccccccccccHHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhh
Q 006015 7 SEKINLFDLLSEEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKH 52 (664)
Q Consensus 7 ~~~~~~~~~LP~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~ 52 (664)
.-..|+|+.||+||+.+||+ ||+ ++|+.+++.|||+|+.++.+.
T Consensus 13 ~~~~D~i~~LP~Eil~~Ils-~Ld-~~dL~~~~~vcr~w~~l~~~~ 56 (102)
T d2ovrb1 13 QFQRDFISLLPKELALYVLS-FLE-PKDLLQAAQTCRYWRILAEDN 56 (102)
T ss_dssp CCCCSTTTSSCHHHHHHHHT-TSC-HHHHHHHTTSCHHHHHHHTCS
T ss_pred hhccCChhhCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHHCCH
Confidence 34679999999999999999 999 999999999999999997754
No 42
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.31 E-value=2e-08 Score=83.36 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=48.1
Q ss_pred cCCcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCCCChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHhCCc
Q 006015 531 GCKQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTSVTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLACGG 610 (664)
Q Consensus 531 ~~~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~~~~ 610 (664)
.+++|++|++.+++.++......+ .++++|+.|++++|+|+...+.+| ..+++|+.+++++|.++.++...+....
T Consensus 29 ~l~~l~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~i~~~~f---~~l~~L~~L~Ls~N~l~~l~~~~~~~~~ 104 (156)
T d2ifga3 29 GAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRFVAPDAF---HFTPRLSRLNLSFNALESLSWKTVQGLS 104 (156)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCEECTTGG---GSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred CccccCeeecCCCccccccCchhh-ccccccCcceeeccccCCcccccc---cccccccceeccCCCCcccChhhhcccc
Confidence 445555555554433333222111 225666666666666666544443 3344555666777777766666666556
Q ss_pred ccceeee-hhhc
Q 006015 611 ITKVKLQ-AAFK 621 (664)
Q Consensus 611 L~~l~l~-n~~~ 621 (664)
|+.|+|+ |++.
T Consensus 105 l~~L~L~~Np~~ 116 (156)
T d2ifga3 105 LQELVLSGNPLH 116 (156)
T ss_dssp CCEEECCSSCCC
T ss_pred ccccccCCCccc
Confidence 7777777 6554
No 43
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.21 E-value=2.5e-07 Score=72.18 Aligned_cols=43 Identities=23% Similarity=0.280 Sum_probs=38.7
Q ss_pred ccccccccc----HHHHHHHHhhcccCccchhHHHHHhHHHHHHHHhhh
Q 006015 9 KINLFDLLS----EEIVFIILDCLNTNPFDKKSFSLVCKSFYITESKHR 53 (664)
Q Consensus 9 ~~~~~~~LP----~evl~~If~~~L~~~~~~~~~~~vck~W~~~~~~~~ 53 (664)
..|.++.|| |||+.+||+ ||+ .+|+.++++|||+|++++.+..
T Consensus 7 ~~D~i~~LP~~l~~EI~~~Ils-~Ld-~~dL~~~s~Vck~W~~l~~d~~ 53 (118)
T d1p22a1 7 QRDFITALPARGLDHIAENILS-YLD-AKSLCAAELVCKEWYRVTSDGM 53 (118)
T ss_dssp CCCHHHHTGGGTCHHHHHHHHT-TCC-HHHHHHHHHHCHHHHHHHHHTT
T ss_pred cccHHHHCCCCChHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHHcCHH
Confidence 457899999 599999999 999 9999999999999999987543
No 44
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.17 E-value=2.6e-08 Score=82.58 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=83.1
Q ss_pred CcCcEEeccCccccChhhHHHHHhcCcccCeeeeccCC-CChhHHHHhhCCcccccceeeccCCCCHHHHHHHHHh-CCc
Q 006015 533 KQLIKLDIKWCHNINDVGMLPLAHFSQNLRQINLSYTS-VTDVGLLSLASISCLQNMTILHLKGLSLNGLAAALLA-CGG 610 (664)
Q Consensus 533 ~~L~~L~l~~~~~i~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~~~L~~L~~l~l~~n~~~~~~~~~~~-~~~ 610 (664)
...+.++..++..+... .....+++|++|++++|+ ++...+.+ |.++++|+.+++++|.++.+++..+. +++
T Consensus 8 ~~~~~l~c~~~~~~~~p---~~l~~l~~l~~L~l~~n~~l~~i~~~~---f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~ 81 (156)
T d2ifga3 8 HGSSGLRCTRDGALDSL---HHLPGAENLTELYIENQQHLQHLELRD---LRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81 (156)
T ss_dssp SSSSCEECCSSCCCTTT---TTSCSCSCCSEEECCSCSSCCEECGGG---SCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred CCCCeEEecCCCCccCc---ccccCccccCeeecCCCccccccCchh---hccccccCcceeeccccCCccccccccccc
Confidence 34556666666332211 111236899999998775 87755444 66677788999999999999877766 999
Q ss_pred ccceeee-hhhcccCChhHHHHHHhcceEEEeecccccccCCc-cccc
Q 006015 611 ITKVKLQ-AAFKQLLPQPLIDHLQARGCVFQWRNKVFQAELDP-KSWK 656 (664)
Q Consensus 611 L~~l~l~-n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 656 (664)
|+.|+|+ |.+. .+|....+...+...++.+|+..|+|+... ..|.
T Consensus 82 L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~ 128 (156)
T d2ifga3 82 LSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWE 128 (156)
T ss_dssp CCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHH
T ss_pred ccceeccCCCCc-ccChhhhccccccccccCCCcccCCchHHHHHHHH
Confidence 9999999 8888 788777776677788888887777665433 3344
No 45
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.74 E-value=1.4e-05 Score=66.14 Aligned_cols=8 Identities=38% Similarity=0.364 Sum_probs=5.0
Q ss_pred CCCCCEEe
Q 006015 251 CKSLKALD 258 (664)
Q Consensus 251 ~~~L~~L~ 258 (664)
+|+|+.||
T Consensus 145 ~P~L~~LD 152 (162)
T d1koha1 145 FPKLLRLD 152 (162)
T ss_dssp STTCCEET
T ss_pred CCCCCEEC
Confidence 66666664
No 46
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.69 E-value=2e-05 Score=65.28 Aligned_cols=87 Identities=22% Similarity=0.190 Sum_probs=55.4
Q ss_pred HHHHhhCCCCCEEEccCCCCChhh--HHhhccCCCccEEcccCCCCCChHhHHHHhhCCCCCcEEEcCCCCCCCh-----
Q 006015 399 VLIGQRCRFLEELDLTDNEIDDEG--LKSISRCSKLSVLKLGICLNITGEGLAHVGMCCSKLKELDLYRCVGITD----- 471 (664)
Q Consensus 399 ~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~~~----- 471 (664)
..+...+++|++|++++|++++.. ...+..+++|+.|++++| .+++....... ...+|+.|++++|+ ++.
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l-~~~~L~~L~L~~Np-l~~~~~~~ 134 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKI-KGLKLEELWLDGNS-LSDTFRDQ 134 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGHHHH-TTCCCSSCCCTTST-TSSSSSSH
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccccchhhhhh-hccccceeecCCCC-cCcCcccc
Confidence 334446788888888888777532 344566788888888888 77764333333 34567888888876 321
Q ss_pred -HHHHHHHhcCCCCCEEe
Q 006015 472 -SGILTIACGCPDLEMIN 488 (664)
Q Consensus 472 -~~~~~~~~~~~~L~~L~ 488 (664)
.....++..+|+|+.|+
T Consensus 135 ~~y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 135 STYISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHHHTTSTTCCEET
T ss_pred hhHHHHHHHHCCCCCEEC
Confidence 23445566677777665
Done!