Query 006016
Match_columns 664
No_of_seqs 403 out of 1854
Neff 6.2
Searched_HMMs 46136
Date Thu Mar 28 17:08:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5038 Ca2+-dependent lipid-b 100.0 3E-64 6.5E-69 578.2 31.3 392 111-541 148-570 (1227)
2 cd04016 C2_Tollip C2 domain pr 99.8 4.3E-19 9.4E-24 164.1 14.1 117 401-527 1-121 (121)
3 cd08681 C2_fungal_Inn1p-like C 99.8 7.7E-18 1.7E-22 153.6 12.9 115 402-527 1-118 (118)
4 cd08682 C2_Rab11-FIP_classI C2 99.7 1.5E-17 3.2E-22 154.0 12.5 116 404-526 1-126 (126)
5 cd04042 C2A_MCTP_PRT C2 domain 99.7 3.3E-17 7.1E-22 150.5 13.7 117 404-529 2-121 (121)
6 cd08391 C2A_C2C_Synaptotagmin_ 99.7 3.4E-17 7.3E-22 149.4 12.6 113 402-527 1-121 (121)
7 cd08379 C2D_MCTP_PRT_plant C2 99.7 4.3E-17 9.3E-22 151.9 12.1 113 403-523 1-125 (126)
8 cd08376 C2B_MCTP_PRT C2 domain 99.7 8.5E-17 1.8E-21 146.3 13.1 112 403-528 1-115 (116)
9 cd04024 C2A_Synaptotagmin-like 99.7 8.8E-17 1.9E-21 148.2 13.3 120 402-527 1-128 (128)
10 cd08375 C2_Intersectin C2 doma 99.7 1.1E-16 2.3E-21 151.0 13.8 119 396-527 9-135 (136)
11 cd04044 C2A_Tricalbin-like C2 99.7 1.1E-16 2.3E-21 146.7 12.7 119 401-529 1-124 (124)
12 cd04036 C2_cPLA2 C2 domain pre 99.7 1.4E-16 3.1E-21 145.8 13.2 114 404-527 2-117 (119)
13 cd04046 C2_Calpain C2 domain p 99.7 3.1E-16 6.7E-21 145.5 14.8 122 400-530 1-124 (126)
14 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 2.1E-16 4.5E-21 145.9 13.3 116 404-527 2-121 (121)
15 cd08678 C2_C21orf25-like C2 do 99.7 3.1E-16 6.8E-21 145.2 14.3 122 404-531 1-123 (126)
16 cd04015 C2_plant_PLD C2 domain 99.7 2.9E-16 6.3E-21 151.7 14.6 122 400-528 5-158 (158)
17 cd08400 C2_Ras_p21A1 C2 domain 99.7 4E-16 8.6E-21 144.9 14.8 120 402-529 4-124 (126)
18 cd04022 C2A_MCTP_PRT_plant C2 99.7 2.7E-16 5.9E-21 145.7 12.7 117 404-528 2-126 (127)
19 cd04019 C2C_MCTP_PRT_plant C2 99.7 4E-16 8.7E-21 149.5 13.7 121 403-529 1-133 (150)
20 cd08378 C2B_MCTP_PRT_plant C2 99.7 4.9E-16 1.1E-20 143.4 13.2 113 404-527 2-119 (121)
21 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 7.3E-16 1.6E-20 143.5 13.7 123 403-528 1-133 (133)
22 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 8.2E-16 1.8E-20 141.5 13.3 118 403-526 1-123 (123)
23 KOG1030 Predicted Ca2+-depende 99.7 3.5E-16 7.7E-21 149.8 10.8 92 400-498 4-98 (168)
24 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.8E-15 3.9E-20 137.9 14.3 115 402-527 1-118 (119)
25 cd08395 C2C_Munc13 C2 domain t 99.6 1.8E-15 3.8E-20 139.9 12.5 105 404-508 2-112 (120)
26 cd04014 C2_PKC_epsilon C2 doma 99.6 2.9E-15 6.4E-20 139.7 14.0 113 401-529 3-130 (132)
27 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 4.4E-15 9.5E-20 136.8 13.4 115 404-526 2-120 (121)
28 cd08381 C2B_PI3K_class_II C2 d 99.6 2E-15 4.4E-20 139.5 11.0 105 401-506 12-121 (122)
29 cd04029 C2A_SLP-4_5 C2 domain 99.6 2.7E-15 5.7E-20 139.3 11.5 111 396-507 9-125 (125)
30 cd08373 C2A_Ferlin C2 domain f 99.6 7.3E-15 1.6E-19 136.1 14.1 117 408-533 2-121 (127)
31 cd04028 C2B_RIM1alpha C2 domai 99.6 5.5E-15 1.2E-19 141.1 12.6 106 401-508 28-138 (146)
32 cd04050 C2B_Synaptotagmin-like 99.6 3E-15 6.5E-20 134.3 10.0 98 403-508 1-102 (105)
33 cd08677 C2A_Synaptotagmin-13 C 99.6 2.5E-15 5.4E-20 138.1 9.5 107 396-505 8-117 (118)
34 cd04041 C2A_fungal C2 domain f 99.6 3.5E-15 7.5E-20 135.3 9.7 99 402-506 1-106 (111)
35 cd08382 C2_Smurf-like C2 domai 99.6 1.5E-14 3.4E-19 133.5 13.4 115 404-525 2-122 (123)
36 cd04010 C2B_RasA3 C2 domain se 99.6 9.7E-15 2.1E-19 139.7 12.4 121 404-525 2-147 (148)
37 cd08393 C2A_SLP-1_2 C2 domain 99.6 5.7E-15 1.2E-19 137.0 10.5 110 397-507 10-125 (125)
38 cd04043 C2_Munc13_fungal C2 do 99.6 2.3E-14 5E-19 132.2 14.4 115 403-529 2-122 (126)
39 cd08387 C2A_Synaptotagmin-8 C2 99.6 7.2E-15 1.6E-19 135.4 10.8 108 397-507 11-123 (124)
40 cd04039 C2_PSD C2 domain prese 99.6 8.6E-15 1.9E-19 132.7 10.7 91 402-498 1-99 (108)
41 cd04027 C2B_Munc13 C2 domain s 99.6 2.7E-14 5.9E-19 132.6 13.4 112 403-525 2-127 (127)
42 cd04052 C2B_Tricalbin-like C2 99.6 1.4E-14 3E-19 131.5 10.9 101 418-530 10-111 (111)
43 cd04017 C2D_Ferlin C2 domain f 99.6 6.3E-14 1.4E-18 131.6 14.8 117 403-530 2-134 (135)
44 cd08385 C2A_Synaptotagmin-1-5- 99.6 2.1E-14 4.7E-19 132.1 11.0 108 397-507 11-123 (124)
45 cd08676 C2A_Munc13-like C2 dom 99.6 2.5E-14 5.4E-19 137.6 11.7 107 396-506 22-153 (153)
46 cd08685 C2_RGS-like C2 domain 99.5 1.9E-14 4.1E-19 132.6 9.5 106 400-506 10-119 (119)
47 cd04030 C2C_KIAA1228 C2 domain 99.5 2.9E-14 6.3E-19 131.5 10.7 109 397-506 11-126 (127)
48 cd08688 C2_KIAA0528-like C2 do 99.5 2.5E-14 5.4E-19 129.5 10.0 99 404-508 1-109 (110)
49 cd08394 C2A_Munc13 C2 domain f 99.5 4.3E-14 9.4E-19 131.4 11.8 99 402-509 2-102 (127)
50 cd04031 C2A_RIM1alpha C2 domai 99.5 3.3E-14 7.1E-19 130.7 10.6 109 397-507 11-125 (125)
51 cd08680 C2_Kibra C2 domain fou 99.5 2.3E-14 4.9E-19 133.2 9.6 111 396-506 8-124 (124)
52 cd04051 C2_SRC2_like C2 domain 99.5 3.1E-14 6.6E-19 131.3 10.3 112 403-523 1-125 (125)
53 PLN03008 Phospholipase D delta 99.5 4.5E-14 9.8E-19 163.1 14.0 129 399-534 11-183 (868)
54 cd08690 C2_Freud-1 C2 domain f 99.5 1.1E-13 2.4E-18 133.3 14.4 123 405-532 5-141 (155)
55 cd04045 C2C_Tricalbin-like C2 99.5 1E-13 2.2E-18 127.8 12.8 100 402-508 1-103 (120)
56 cd08392 C2A_SLP-3 C2 domain fi 99.5 4.3E-14 9.3E-19 132.0 10.2 109 397-506 10-127 (128)
57 cd04040 C2D_Tricalbin-like C2 99.5 1.1E-13 2.4E-18 125.5 12.0 110 404-522 1-113 (115)
58 cd04038 C2_ArfGAP C2 domain pr 99.5 1.5E-13 3.3E-18 131.1 13.3 90 401-497 1-92 (145)
59 cd08521 C2A_SLP C2 domain firs 99.5 6.2E-14 1.3E-18 128.5 10.0 109 397-506 9-123 (123)
60 cd04049 C2_putative_Elicitor-r 99.5 1.1E-13 2.3E-18 127.6 11.4 101 402-508 1-108 (124)
61 cd08386 C2A_Synaptotagmin-7 C2 99.5 1.1E-13 2.3E-18 127.5 11.4 108 397-507 11-124 (125)
62 cd08388 C2A_Synaptotagmin-4-11 99.5 1E-13 2.3E-18 129.2 10.7 108 397-507 11-127 (128)
63 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 1.3E-13 2.9E-18 133.8 10.7 110 398-508 23-138 (162)
64 cd04032 C2_Perforin C2 domain 99.5 1.9E-13 4.2E-18 127.6 11.2 92 398-495 24-118 (127)
65 cd08383 C2A_RasGAP C2 domain ( 99.5 4E-13 8.6E-18 121.9 12.6 113 404-527 2-117 (117)
66 cd04011 C2B_Ferlin C2 domain s 99.5 2.6E-13 5.6E-18 122.9 11.1 98 403-508 5-110 (111)
67 cd04013 C2_SynGAP_like C2 doma 99.5 5.4E-13 1.2E-17 127.3 13.5 125 399-532 8-143 (146)
68 cd08390 C2A_Synaptotagmin-15-1 99.5 3.4E-13 7.3E-18 123.7 11.5 109 396-507 8-122 (123)
69 PLN03200 cellulose synthase-in 99.5 1.4E-13 3E-18 171.8 10.8 120 400-529 1978-2101(2102)
70 cd08389 C2A_Synaptotagmin-14_1 99.5 2.9E-13 6.3E-18 125.4 10.2 108 396-507 10-123 (124)
71 cd08691 C2_NEDL1-like C2 domai 99.5 1.1E-12 2.4E-17 124.0 14.0 119 403-525 2-136 (137)
72 cd08675 C2B_RasGAP C2 domain s 99.4 4.4E-13 9.5E-18 126.5 11.1 104 404-509 1-121 (137)
73 cd04018 C2C_Ferlin C2 domain t 99.4 5.7E-13 1.2E-17 128.0 11.2 99 404-508 2-125 (151)
74 cd08686 C2_ABR C2 domain in th 99.4 9.9E-13 2.1E-17 120.8 12.2 97 404-506 1-107 (118)
75 cd04021 C2_E3_ubiquitin_ligase 99.4 1.7E-12 3.7E-17 120.4 13.4 115 403-525 3-124 (125)
76 cd04037 C2E_Ferlin C2 domain f 99.4 8.6E-13 1.9E-17 122.2 11.1 90 403-496 1-93 (124)
77 cd04048 C2A_Copine C2 domain f 99.4 7.4E-13 1.6E-17 121.5 10.5 101 408-508 6-114 (120)
78 cd08384 C2B_Rabphilin_Doc2 C2 99.4 2.8E-13 6.1E-18 126.3 7.7 108 397-507 8-120 (133)
79 cd04009 C2B_Munc13-like C2 dom 99.4 8.6E-13 1.9E-17 123.6 10.1 97 400-496 14-118 (133)
80 cd04026 C2_PKC_alpha_gamma C2 99.4 1.2E-12 2.7E-17 121.7 10.8 105 402-508 13-121 (131)
81 KOG1028 Ca2+-dependent phospho 99.4 2.2E-12 4.8E-17 142.8 12.9 135 395-533 160-299 (421)
82 cd08405 C2B_Synaptotagmin-7 C2 99.4 2E-12 4.3E-17 121.3 10.6 107 397-506 10-121 (136)
83 cd00275 C2_PLC_like C2 domain 99.4 9.7E-12 2.1E-16 114.5 14.2 120 403-527 3-127 (128)
84 cd08402 C2B_Synaptotagmin-1 C2 99.4 2.1E-12 4.6E-17 121.1 9.9 108 396-506 9-121 (136)
85 cd08408 C2B_Synaptotagmin-14_1 99.4 2.2E-12 4.9E-17 121.9 10.0 110 396-506 9-123 (138)
86 cd04035 C2A_Rabphilin_Doc2 C2 99.4 3.1E-12 6.7E-17 117.7 10.4 106 397-503 10-120 (123)
87 cd08404 C2B_Synaptotagmin-4 C2 99.4 1.8E-12 3.9E-17 121.7 8.4 106 399-507 12-122 (136)
88 cd08406 C2B_Synaptotagmin-12 C 99.3 2.2E-12 4.7E-17 121.8 8.5 107 397-506 10-121 (136)
89 cd08407 C2B_Synaptotagmin-13 C 99.3 2.2E-12 4.8E-17 122.1 8.4 108 396-506 9-123 (138)
90 KOG0696 Serine/threonine prote 99.3 4.3E-13 9.3E-18 143.2 3.5 106 401-508 179-288 (683)
91 cd00276 C2B_Synaptotagmin C2 d 99.3 2.1E-12 4.6E-17 119.8 6.8 107 399-508 11-122 (134)
92 cd08403 C2B_Synaptotagmin-3-5- 99.3 2.8E-12 6E-17 120.0 7.6 107 397-506 9-120 (134)
93 cd08410 C2B_Synaptotagmin-17 C 99.3 5.3E-12 1.1E-16 118.7 9.5 109 396-506 8-121 (135)
94 cd08692 C2B_Tac2-N C2 domain s 99.3 9.7E-12 2.1E-16 117.1 9.0 98 396-494 8-110 (135)
95 cd04047 C2B_Copine C2 domain s 99.3 1.7E-11 3.7E-16 110.5 10.2 89 408-497 6-101 (110)
96 cd08409 C2B_Synaptotagmin-15 C 99.3 8.2E-12 1.8E-16 117.8 8.4 109 397-506 10-122 (137)
97 KOG1011 Neurotransmitter relea 99.2 3.9E-11 8.4E-16 132.6 10.8 121 397-528 290-424 (1283)
98 PF00168 C2: C2 domain; Inter 99.2 6E-11 1.3E-15 100.0 7.8 82 404-488 1-85 (85)
99 PF10296 DUF2404: Putative int 99.1 3.3E-10 7.1E-15 99.8 10.9 87 198-284 1-89 (91)
100 PLN02270 phospholipase D alpha 99.1 6.1E-10 1.3E-14 129.3 13.6 126 400-534 6-154 (808)
101 cd00030 C2 C2 domain. The C2 d 99.0 2.3E-09 5E-14 91.2 10.1 97 404-505 1-101 (102)
102 smart00239 C2 Protein kinase C 99.0 2.5E-09 5.4E-14 91.8 10.3 92 404-498 2-96 (101)
103 COG5038 Ca2+-dependent lipid-b 99.0 9.7E-10 2.1E-14 129.6 9.4 123 399-529 1037-1162(1227)
104 KOG2059 Ras GTPase-activating 99.0 1.7E-09 3.7E-14 121.8 9.6 125 403-535 6-132 (800)
105 cd08374 C2F_Ferlin C2 domain s 98.8 1.2E-08 2.7E-13 96.0 9.5 92 404-498 2-125 (133)
106 PLN02223 phosphoinositide phos 98.8 6.2E-08 1.3E-12 108.9 13.9 104 401-508 408-519 (537)
107 PLN02952 phosphoinositide phos 98.7 1.1E-07 2.3E-12 108.9 13.8 119 401-527 469-596 (599)
108 KOG1028 Ca2+-dependent phospho 98.7 3.1E-08 6.7E-13 110.1 9.0 98 395-493 291-393 (421)
109 KOG1264 Phospholipase C [Lipid 98.7 9.1E-08 2E-12 108.9 11.0 130 402-536 1065-1197(1267)
110 KOG1328 Synaptic vesicle prote 98.6 8.5E-09 1.8E-13 116.0 1.3 130 396-528 108-301 (1103)
111 PLN02352 phospholipase D epsil 98.5 6.3E-07 1.4E-11 104.4 12.5 121 398-533 6-135 (758)
112 PLN02222 phosphoinositide phos 98.5 1.1E-06 2.4E-11 100.4 14.1 104 401-508 451-563 (581)
113 PLN02230 phosphoinositide phos 98.5 8.4E-07 1.8E-11 101.6 13.0 104 401-508 468-580 (598)
114 PLN02228 Phosphoinositide phos 98.4 1.8E-06 3.9E-11 98.4 13.6 123 401-529 430-562 (567)
115 KOG0169 Phosphoinositide-speci 98.4 1.3E-06 2.8E-11 100.4 10.8 120 403-528 617-744 (746)
116 cd08689 C2_fungal_Pkc1p C2 dom 98.4 7.1E-07 1.5E-11 80.4 6.3 84 404-497 1-89 (109)
117 KOG1031 Predicted Ca2+-depende 98.1 4.7E-06 1E-10 92.4 7.0 115 402-526 3-134 (1169)
118 KOG2059 Ras GTPase-activating 98.1 6.3E-06 1.4E-10 93.7 7.7 117 410-528 139-276 (800)
119 KOG1328 Synaptic vesicle prote 98.0 2.7E-06 5.8E-11 96.5 2.2 97 400-496 945-1049(1103)
120 KOG1326 Membrane-associated pr 97.7 2.8E-05 6.1E-10 91.3 3.7 88 403-494 614-704 (1105)
121 KOG3532 Predicted protein kina 97.6 0.00072 1.6E-08 76.9 13.3 228 192-433 99-360 (1051)
122 KOG0905 Phosphoinositide 3-kin 97.5 6.4E-05 1.4E-09 89.4 4.5 106 400-506 1522-1633(1639)
123 PLN02964 phosphatidylserine de 97.3 0.00029 6.3E-09 81.9 6.1 91 396-497 48-140 (644)
124 KOG1013 Synaptic vesicle prote 96.9 0.0013 2.8E-08 69.8 5.2 92 397-489 228-324 (362)
125 KOG3837 Uncharacterized conser 96.8 0.001 2.3E-08 72.1 4.2 125 401-530 366-505 (523)
126 cd08683 C2_C2cd3 C2 domain fou 96.8 0.0021 4.5E-08 60.1 5.1 100 404-505 1-142 (143)
127 KOG1327 Copine [Signal transdu 96.7 0.003 6.4E-08 71.4 6.6 87 409-496 143-236 (529)
128 KOG1011 Neurotransmitter relea 96.5 0.0076 1.6E-07 68.4 8.2 104 403-506 1126-1235(1283)
129 KOG1013 Synaptic vesicle prote 96.5 0.00071 1.5E-08 71.7 -0.0 135 397-532 88-233 (362)
130 KOG2060 Rab3 effector RIM1 and 96.0 0.0057 1.2E-07 66.0 3.6 109 398-508 265-379 (405)
131 cd08684 C2A_Tac2-N C2 domain f 95.5 0.013 2.8E-07 51.5 3.4 87 405-497 2-95 (103)
132 KOG1326 Membrane-associated pr 95.2 0.0055 1.2E-07 72.7 0.0 100 402-508 206-317 (1105)
133 KOG1452 Predicted Rho GTPase-a 93.8 0.1 2.2E-06 55.3 5.7 113 399-528 48-167 (442)
134 PF10358 NT-C2: N-terminal C2 93.6 2.3 4.9E-05 39.9 14.0 124 402-535 7-142 (143)
135 PF12416 DUF3668: Cep120 prote 92.5 1.1 2.4E-05 48.9 11.4 121 404-532 2-136 (340)
136 PF15627 CEP76-C2: CEP76 C2 do 91.6 2.2 4.9E-05 41.5 11.1 124 402-532 9-154 (156)
137 KOG1265 Phospholipase C [Lipid 90.8 0.42 9.2E-06 56.8 6.2 92 401-497 702-797 (1189)
138 cd08398 C2_PI3K_class_I_alpha 90.8 1.1 2.3E-05 43.8 8.1 88 402-493 8-105 (158)
139 cd08380 C2_PI3K_like C2 domain 90.6 0.89 1.9E-05 43.7 7.4 90 403-494 9-107 (156)
140 cd08693 C2_PI3K_class_I_beta_d 89.8 1.3 2.7E-05 43.8 7.9 90 402-493 8-119 (173)
141 KOG1327 Copine [Signal transdu 88.1 0.95 2.1E-05 51.7 6.3 62 437-498 40-106 (529)
142 PF00792 PI3K_C2: Phosphoinosi 87.4 8.4 0.00018 36.4 11.5 54 441-494 23-85 (142)
143 cd08397 C2_PI3K_class_III C2 d 85.6 2.3 5E-05 41.5 6.7 73 420-494 29-107 (159)
144 cd08399 C2_PI3K_class_I_gamma 82.1 11 0.00023 37.6 9.8 71 403-477 11-88 (178)
145 cd04012 C2A_PI3K_class_II C2 d 80.6 5.6 0.00012 39.0 7.3 91 402-494 8-119 (171)
146 PF14429 DOCK-C2: C2 domain in 74.5 12 0.00026 37.0 7.7 54 440-493 61-120 (184)
147 cd08687 C2_PKN-like C2 domain 71.6 23 0.0005 31.7 7.8 85 420-527 8-92 (98)
148 cd08695 C2_Dock-B C2 domains f 71.6 31 0.00068 34.7 9.8 55 439-493 54-113 (189)
149 cd08694 C2_Dock-A C2 domains f 69.7 20 0.00043 36.4 7.9 54 439-492 54-114 (196)
150 PF12273 RCR: Chitin synthesis 68.8 4.2 9.1E-05 38.1 2.8 29 134-162 1-29 (130)
151 KOG2238 Uncharacterized conser 67.1 2.2 4.8E-05 50.5 0.7 95 191-285 333-429 (795)
152 PF11618 DUF3250: Protein of u 64.0 24 0.00053 32.2 6.7 83 441-528 14-105 (107)
153 KOG1329 Phospholipase D1 [Lipi 61.8 12 0.00026 45.3 5.4 108 419-533 136-245 (887)
154 smart00142 PI3K_C2 Phosphoinos 60.4 29 0.00063 30.9 6.5 73 404-478 13-92 (100)
155 cd08697 C2_Dock-D C2 domains f 60.0 1.4E+02 0.0029 30.1 11.7 55 439-493 57-123 (185)
156 PF15625 CC2D2AN-C2: CC2D2A N- 59.9 38 0.00082 33.2 7.8 71 420-496 36-108 (168)
157 cd08696 C2_Dock-C C2 domains f 49.7 1.4E+02 0.0031 29.8 9.9 56 438-493 54-118 (179)
158 cd08679 C2_DOCK180_related C2 49.3 48 0.001 32.6 6.6 53 440-493 55-115 (178)
159 KOG0694 Serine/threonine prote 42.6 9.3 0.0002 45.0 0.4 95 421-531 28-124 (694)
160 KOG4269 Rac GTPase-activating 42.2 12 0.00027 45.1 1.3 75 397-477 754-828 (1112)
161 PTZ00447 apical membrane antig 37.1 2.5E+02 0.0054 31.0 9.9 108 404-526 60-171 (508)
162 PF14316 DUF4381: Domain of un 35.1 57 0.0012 31.1 4.5 18 190-207 66-83 (146)
163 PF09451 ATG27: Autophagy-rela 34.6 17 0.00038 38.3 0.9 22 134-155 197-218 (268)
164 PF05545 FixQ: Cbb3-type cytoc 31.8 48 0.001 25.7 2.8 28 134-164 11-38 (49)
165 PF11044 TMEMspv1-c74-12: Plec 30.4 81 0.0018 24.4 3.6 27 129-155 1-27 (49)
166 PF11669 WBP-1: WW domain-bind 27.5 74 0.0016 28.8 3.6 15 141-155 27-41 (102)
167 PF10268 Tmemb_161AB: Predicte 26.3 46 0.00099 38.3 2.5 42 114-155 435-480 (486)
168 KOG2419 Phosphatidylserine dec 24.0 12 0.00025 43.8 -2.7 59 398-463 276-340 (975)
No 1
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=100.00 E-value=3e-64 Score=578.24 Aligned_cols=392 Identities=21% Similarity=0.411 Sum_probs=338.2
Q ss_pred ChhHHHHhhheeeeeeCCCCchhhhhhhhHHH----HHHHHHHHHHHHh--hhhhhcccchhhhhcCCCCCCCCccceee
Q 006016 111 DPLVDKLRTQLGVIHPMPSPPINRNIAGLFVF----FFFVGVAFDKLWT--SRKRNSKMRNEDKLRGAWPQVPTSFSLFL 184 (664)
Q Consensus 111 ~~~~~~~~~~~~~i~~~~~p~~~r~~~gl~~~----~f~v~~~~~~ly~--~~r~~R~~~~d~~~~e~~~~~~~~~~~~~ 184 (664)
+.+..+||+++++++- -+++-|++|-+.+ +|||+++|.++|| +.|.+|+.| |+++++ ++ .
T Consensus 148 ~~~y~~w~qs~~i~l~---~~v~Swifg~~~fs~~slffii~~~~~vY~~~~~rv~rnir-d~v~~~--------~~--~ 213 (1227)
T COG5038 148 KKFYGDWYQSVAIVLI---GSVASWIFGYLGFSFASLFFIILVTMYVYRTCIKRVRRNIR-DLVQQE--------LS--E 213 (1227)
T ss_pred HHHhhhhhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--------HH--H
Confidence 3466778887776655 5677777765544 8999999999999 455666666 999887 22 2
Q ss_pred cccCCCCCchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhcCCCCCcceEEEeEEeeCCCCceeeeEeeeecCCCCeE
Q 006016 185 EKDLQRKESVEWVNMVLGKLWKVYRGGIENWIIGLLQPVIDDLKKPDYVERVEIKQFSLGDDPLSVRNVERRTSRRVNDL 264 (664)
Q Consensus 185 e~~~~~~EsveWLN~~L~k~Wp~~~~~is~~I~~~le~iL~~~~~P~fi~sl~~~~ftLG~~pPrI~~Vr~~~~~~~~~l 264 (664)
|+...++||+||||++|+|+||+++|.+++.|.+++|+.|+. ..|+||++++|++||||++||||.+||+|++.+.|.+
T Consensus 214 ek~~nd~ESveWLNtfL~KfW~i~eP~iSqqV~dqvn~~la~-~iPsFI~~l~l~efTLGsk~PrI~~Irsyp~te~dtv 292 (1227)
T COG5038 214 EKLENDYESVEWLNTFLQKFWPIIEPSISQQVVDQVNQQLAE-AIPSFIDALALDEFTLGSKPPRIDGIRSYPSTESDTV 292 (1227)
T ss_pred HhhhcchhHHHHHHHHHHhheeccChHHHHHHHHHHHHHHHh-hcchhhhhhhhhhcccCCCCCceeeeeecCCCCCceE
Confidence 344456999999999999999999999999999999999999 6899999999999999999999999999999999999
Q ss_pred EEEEEEEEeCCC---------------cEEEEEEeeccccCeeEEEEEEEEEEEEEEEEEEEecCCCCccCeeeEEeecC
Q 006016 265 QYQIGLRYTGGA---------------RMLLMLSLKFGIIPIAVPVGVRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSL 329 (664)
Q Consensus 265 ~lD~dv~~~g~~---------------~I~L~v~l~~g~~g~~lpV~V~~l~~~G~lRV~l~L~~~~P~v~~v~vsFle~ 329 (664)
.|||+++|++++ +|.|.+..++++..+++||.|+|+.|+|++||+++||+.+||+++|++||+|.
T Consensus 293 ~mD~~~sftP~d~sD~t~~~~r~~vn~kIsL~v~~Gk~~~~~~lPI~Vedl~f~g~~Rvr~~L~~~~PfiktV~~~Lle~ 372 (1227)
T COG5038 293 VMDVDFSFTPHDISDVTATSARASVNPKISLVVKKGKSFGSFTLPILVEDLFFKGRVRVRVELMSKYPFIKTVSFQLLEV 372 (1227)
T ss_pred EEEeeeccCccchhhhhhHHHhhhcCcceeEEEEeeeeeeEEeccEEEEeeeeeEEEEEEEEecCCCcceeEEEEEEecC
Confidence 999999999963 46666666655444899999999999999999999999999999999999999
Q ss_pred ceEEEEEeEec----ccccccchhHHHHHHHHHHhhcccceeeccceeecccCCccCCCCccccccccccCCCceeeEEE
Q 006016 330 PKIKFELSPFR----LFNLMAIPVLSMFLKKLLTEDLPRLFVRPKKIVLDFQKGKAVGPVANDLKSGEQDRNEDFVGELS 405 (664)
Q Consensus 330 P~idf~lk~lg----~~di~~iPgL~~~I~~~I~~~l~~~lV~P~~l~i~l~~~~a~gP~~~dl~sg~~~~~~~~~GvL~ 405 (664)
|++||.++|+| ++|||+||||++||+++|+.++++|+++|+++++|+.+++++ ....++|+|.
T Consensus 373 Pe~df~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~-------------~s~~aIGVv~ 439 (1227)
T COG5038 373 PEFDFILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAG-------------DSGTAIGVVE 439 (1227)
T ss_pred cceeEEEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhcc-------------ccCCeeEEEE
Confidence 99999999998 689999999999999999999999999999999999997642 1456899999
Q ss_pred EEEEeceecccc----cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-C
Q 006016 406 VTLVDARKLFYI----YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-A 480 (664)
Q Consensus 406 VtV~~Ar~L~~~----~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-k 480 (664)
|+|.+|++|+.. .+..|||+++.+.+... .||++.++++||+|||++++++.+. +++|.++|||.+.+ +
T Consensus 440 vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~-----gkT~v~~nt~nPvwNEt~Yi~lns~-~d~L~LslyD~n~~~s 513 (1227)
T COG5038 440 VKIKSAEGLKKSDSTINGTVDPYITVTFSDRVI-----GKTRVKKNTLNPVWNETFYILLNSF-TDPLNLSLYDFNSFKS 513 (1227)
T ss_pred EEEeeccCcccccccccCCCCceEEEEeccccC-----CccceeeccCCccccceEEEEeccc-CCceeEEEEeccccCC
Confidence 999999999976 78899999999877654 3799999999999999999999987 89999999998775 9
Q ss_pred CceeEeEEeecCcccCCCcc-ceEEEecCCcccCCCceeeEEEEEEEEEecCCCCcchhhhc
Q 006016 481 DISIGTGEVDLGSLKDTVPT-DRIVELRGGWGLFKNGFTGELLLRLTYKAYVEDEEDDTTMA 541 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~~~~~~-d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~~~ee~~~~~~ 541 (664)
|+.+|++.++|..|.+.... +..+.+. .+.+..|+|+++++|+|+.++.-.+....
T Consensus 514 d~vvG~~~l~L~~L~~~~~~~ne~~e~~-----~~~k~vGrL~yDl~ffp~~e~k~~~~~s~ 570 (1227)
T COG5038 514 DKVVGSTQLDLALLHQNPVKKNELYEFL-----RNTKNVGRLTYDLRFFPVIEDKKELKGSV 570 (1227)
T ss_pred cceeeeEEechHHhhhccccccceeeee-----ccCccceEEEEeeeeecccCCcccccccc
Confidence 99999999999999886443 3344432 24589999999999999999855544444
No 2
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.80 E-value=4.3e-19 Score=164.11 Aligned_cols=117 Identities=24% Similarity=0.380 Sum_probs=99.9
Q ss_pred eeEEEEEEEeceecccc-cCCCCcEEEEEeccccccceeeeeeEEeCC-CCCccccceEEEEEecCCCcEEEEEEEecCC
Q 006016 401 VGELSVTLVDARKLFYI-YGKPDPYVVLSLGDQIIRSKKNSQTTVFGP-PGEPIWNQDFHLLVANPRKQKLYIQVKDSFG 478 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~-tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~ 478 (664)
+|+|+|+|++|++++.. .|++||||++.++++.. +|+++.+ +.||+|||+|+|.+... ...|.|+|||+|.
T Consensus 1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~------kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~ 73 (121)
T cd04016 1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVY------ETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERA 73 (121)
T ss_pred CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEE------EeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCC
Confidence 48999999999998877 79999999999988653 6888865 79999999999999765 5789999999998
Q ss_pred C-CCceeEeEEeecC-cccCCCccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 479 F-ADISIGTGEVDLG-SLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 479 ~-kDd~LG~~~IdL~-~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
+ +|++||.+.++|. .+..+...+.|++|.+. .+.+..|+|+|.|+|
T Consensus 74 ~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~---~~~~~~g~i~l~l~y 121 (121)
T cd04016 74 FTMDERIAWTHITIPESVFNGETLDDWYSLSGK---QGEDKEGMINLVFSY 121 (121)
T ss_pred CcCCceEEEEEEECchhccCCCCccccEeCcCc---cCCCCceEEEEEEeC
Confidence 6 7999999999996 56666667999999652 234578999999987
No 3
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.76 E-value=7.7e-18 Score=153.60 Aligned_cols=115 Identities=30% Similarity=0.399 Sum_probs=99.3
Q ss_pred eEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeC-CCCCccccceEEEEEecCCCcEEEEEEEecCC
Q 006016 402 GELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFG-PPGEPIWNQDFHLLVANPRKQKLYIQVKDSFG 478 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik-~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~ 478 (664)
|.|+|+|++|++|++. .+++||||+++++++. ++|+++. ++.||+|||+|.|.+.....+.|.++|||++.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~------~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~ 74 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVT------KKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK 74 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCc------cccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC
Confidence 7899999999999987 7889999999998754 3577764 57999999999999987657899999999987
Q ss_pred CCCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 479 FADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 479 ~kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
.+|++||++.+++.++..+...+.|++|.+ +++..|+|+++++|
T Consensus 75 ~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-----~~~~~G~i~l~l~f 118 (118)
T cd08681 75 RKPDLIGDTEVDLSPALKEGEFDDWYELTL-----KGRYAGEVYLELTF 118 (118)
T ss_pred CCCcceEEEEEecHHHhhcCCCCCcEEecc-----CCcEeeEEEEEEEC
Confidence 679999999999999877666788999864 23689999999987
No 4
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.74 E-value=1.5e-17 Score=153.96 Aligned_cols=116 Identities=22% Similarity=0.358 Sum_probs=97.1
Q ss_pred EEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec-----CCCcEEEEEEEec
Q 006016 404 LSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN-----PRKQKLYIQVKDS 476 (664)
Q Consensus 404 L~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~-----~~~q~L~I~V~D~ 476 (664)
++|+|++|++|+.. .|.+||||++.++++. ++|+++++++||+|||+|.|.+.. ...+.|.++|||+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~------~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~ 74 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEK------YSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHR 74 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECCee------eeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEc
Confidence 47999999999977 7889999999997653 479999999999999999999976 3478899999999
Q ss_pred CCC-CCceeEeEEeecCccc--CCCccceEEEecCCcccCCCceeeEEEEEEE
Q 006016 477 FGF-ADISIGTGEVDLGSLK--DTVPTDRIVELRGGWGLFKNGFTGELLLRLT 526 (664)
Q Consensus 477 d~~-kDd~LG~~~IdL~~L~--~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~ 526 (664)
+.+ +|++||++.++|+++. .+...+.|++|.+... ...+..|+|+++++
T Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~-~~~~~~Gei~l~~~ 126 (126)
T cd08682 75 NLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG-KDDKERGEIEVDIQ 126 (126)
T ss_pred cccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC-CCccccceEEEEeC
Confidence 986 7999999999999987 4456689999975311 23457899999874
No 5
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.73 E-value=3.3e-17 Score=150.52 Aligned_cols=117 Identities=27% Similarity=0.378 Sum_probs=102.6
Q ss_pred EEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-C
Q 006016 404 LSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-A 480 (664)
Q Consensus 404 L~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-k 480 (664)
|+|+|++|++|+.. .|.+||||++.+++.. .++|+++.++.||+|||+|.|.+... .+.|.++|||++.. +
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~-----~~kT~~~~~t~nP~Wne~f~f~v~~~-~~~l~~~v~D~d~~~~ 75 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKT-----VYKSKTIYKNLNPVWDEKFTLPIEDV-TQPLYIKVFDYDRGLT 75 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEE-----EEEeeeccCCCCCccceeEEEEecCC-CCeEEEEEEeCCCCCC
Confidence 78999999999977 7899999999997632 45799999999999999999999876 68999999999986 8
Q ss_pred CceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEe
Q 006016 481 DISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKA 529 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P 529 (664)
|++||.+.++|.++..+...+.|++|.+. .+.+..|+|++.++|.|
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~---~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 76 DDFMGSAFVDLSTLELNKPTEVKLKLEDP---NSDEDLGYISLVVTLTP 121 (121)
T ss_pred CcceEEEEEEHHHcCCCCCeEEEEECCCC---CCccCceEEEEEEEECC
Confidence 99999999999999988788899999753 12467999999999976
No 6
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.73 E-value=3.4e-17 Score=149.41 Aligned_cols=113 Identities=29% Similarity=0.436 Sum_probs=99.6
Q ss_pred eEEEEEEEeceecccc-c-------CCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEE
Q 006016 402 GELSVTLVDARKLFYI-Y-------GKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQV 473 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~-~-------G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V 473 (664)
|+|+|+|++|++|+.. . |.+||||+++++++. ++|++++++.||+|||+|.|.+.....+.|.++|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~------~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v 74 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQT------FKSKVIKENLNPKWNEVYEAVVDEVPGQELEIEL 74 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEe------EEccccCCCCCCcccceEEEEeCCCCCCEEEEEE
Confidence 7899999999999876 2 578999999998743 4799999999999999999999876678999999
Q ss_pred EecCCCCCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 474 KDSFGFADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 474 ~D~d~~kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
||++..+|++||.+.++|.++..+...+.|++|++ ...|+|+++++|
T Consensus 75 ~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~-------~~~G~~~~~~~~ 121 (121)
T cd08391 75 FDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLED-------VKSGRLHLKLEW 121 (121)
T ss_pred EecCCCCCCcEEEEEEEHHHhcccCccceEEECcC-------CCCceEEEEEeC
Confidence 99988899999999999999988777789999864 368999999876
No 7
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.72 E-value=4.3e-17 Score=151.87 Aligned_cols=113 Identities=25% Similarity=0.274 Sum_probs=96.0
Q ss_pred EEEEEEEecee---cccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecC
Q 006016 403 ELSVTLVDARK---LFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSF 477 (664)
Q Consensus 403 vL~VtV~~Ar~---L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d 477 (664)
.|+|+|++|++ |+.. .|++||||+++++++.. +|+++++++||+|||+|+|.+.++ ...|.++|||++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~------rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d 73 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWV------RTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNS 73 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEe------EcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECC
Confidence 38999999999 6666 78999999999987653 699999999999999999999876 569999999998
Q ss_pred CC-------CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEE
Q 006016 478 GF-------ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLL 523 (664)
Q Consensus 478 ~~-------kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L 523 (664)
.. +|++||++.++|..+..+...+.|++|.... ..+.+..|+|++
T Consensus 74 ~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~~~~~~g~l~~ 125 (126)
T cd08379 74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN-PSGVKKMGELEC 125 (126)
T ss_pred CccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC-CCCccCCcEEEe
Confidence 75 8999999999999999887788999996431 123467888875
No 8
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.71 E-value=8.5e-17 Score=146.30 Aligned_cols=112 Identities=31% Similarity=0.417 Sum_probs=99.1
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF- 479 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~- 479 (664)
+|+|+|++|++|+.. .+.+||||+++++++. ++|++++++.||.|||+|.|.+.+...+.|.++|||++..
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~------~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~ 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEK------YKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGK 74 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEe------EecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCC
Confidence 489999999999987 7889999999997643 4799999999999999999999876678999999999986
Q ss_pred CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEE
Q 006016 480 ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYK 528 (664)
Q Consensus 480 kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~ 528 (664)
+|++||++.++|+++..+...+.|++|.+ ..|+|++.++|.
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~w~~L~~--------~~G~~~~~~~~~ 115 (116)
T cd08376 75 KDEFIGRCEIDLSALPREQTHSLELELED--------GEGSLLLLLTLT 115 (116)
T ss_pred CCCeEEEEEEeHHHCCCCCceEEEEEccC--------CCcEEEEEEEec
Confidence 89999999999999988878889999854 369999999874
No 9
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.71 E-value=8.8e-17 Score=148.24 Aligned_cols=120 Identities=26% Similarity=0.355 Sum_probs=100.7
Q ss_pred eEEEEEEEeceecccc----cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecC
Q 006016 402 GELSVTLVDARKLFYI----YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSF 477 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~----~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d 477 (664)
|+|+|+|++|++|+.. .+.+||||++.++++. ++|++++++.||.|||+|.|.+.....+.|.++|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~------~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~ 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQR------FKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKD 74 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEE------EecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECC
Confidence 7899999999999875 3678999999997643 47999999999999999999998765789999999999
Q ss_pred CC-CCceeEeEEeecCcccC---CCccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 478 GF-ADISIGTGEVDLGSLKD---TVPTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 478 ~~-kDd~LG~~~IdL~~L~~---~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
.. +|++||.+.++|.++.. ....+.|+.|.+.....+....|+|+++++|
T Consensus 75 ~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 75 RFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 86 89999999999999873 3345789999754222334689999999986
No 10
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.71 E-value=1.1e-16 Score=150.98 Aligned_cols=119 Identities=29% Similarity=0.448 Sum_probs=99.5
Q ss_pred CCCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQV 473 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V 473 (664)
......|.|+|+|++|++|+.. .|.+||||++.++++. ++|++++++.||.|||+|.|.+.++..+.|.++|
T Consensus 9 ~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~------~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V 82 (136)
T cd08375 9 QRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQE------HKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITV 82 (136)
T ss_pred cCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEe------eeccccCCCCCCccCceEEEEecCccCCEEEEEE
Confidence 3456789999999999999987 7899999999997654 4799999999999999999999877678999999
Q ss_pred EecCCC-CCceeEeEEeecCcccCCC-----ccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 474 KDSFGF-ADISIGTGEVDLGSLKDTV-----PTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 474 ~D~d~~-kDd~LG~~~IdL~~L~~~~-----~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
||++.. +|++||++.++|.++.... ....|..+ ..+.+|+|++++++
T Consensus 83 ~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~-------~~~~~g~i~l~~~~ 135 (136)
T cd08375 83 FDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL-------HEVPTGEVVVKLDL 135 (136)
T ss_pred EECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc-------ccccceeEEEEEEe
Confidence 999975 7999999999999997621 12233333 45788999999986
No 11
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=1.1e-16 Score=146.67 Aligned_cols=119 Identities=31% Similarity=0.394 Sum_probs=98.7
Q ss_pred eeEEEEEEEeceecccc---cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecC
Q 006016 401 VGELSVTLVDARKLFYI---YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSF 477 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~~---~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d 477 (664)
+|+|+|+|++|++|+.. .+.+||||++++++. ...++|++++++.||.|||.|.|.+.. ..+.|.++|||++
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~~-~~~~l~~~v~d~~ 75 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVNS-LTEPLNLTVYDFN 75 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeCC-CCCEEEEEEEecC
Confidence 48999999999999864 467899999999873 123579999999999999999999884 4789999999998
Q ss_pred CC-CCceeEeEEeecCcccCCCccc-eEEEecCCcccCCCceeeEEEEEEEEEe
Q 006016 478 GF-ADISIGTGEVDLGSLKDTVPTD-RIVELRGGWGLFKNGFTGELLLRLTYKA 529 (664)
Q Consensus 478 ~~-kDd~LG~~~IdL~~L~~~~~~d-~~~~L~~~~~~~~~k~~G~I~L~L~y~P 529 (664)
.. +|++||.+.++|.++......+ .+..+. .+++..|+|+++++|+|
T Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~-----~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 76 DKRKDKLIGTAEFDLSSLLQNPEQENLTKNLL-----RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCceeEEEEEEHHHhccCccccCcchhhh-----cCCccceEEEEEEEeCC
Confidence 86 8999999999999998765543 333332 24578899999999987
No 12
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.70 E-value=1.4e-16 Score=145.82 Aligned_cols=114 Identities=24% Similarity=0.249 Sum_probs=98.1
Q ss_pred EEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCCCC
Q 006016 404 LSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGFAD 481 (664)
Q Consensus 404 L~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~kD 481 (664)
|.|+|++|++|+.. .+.+||||++++.+... ..++|++++++.||+|||+|.|.+.....+.|.|+|||++..+|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~---~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~~~ 78 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASD---EKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYVMD 78 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCC---ccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCCCC
Confidence 78999999999987 68899999999865321 23589999999999999999999987656789999999998889
Q ss_pred ceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 482 ISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 482 d~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
++||++.+++.++..+...+.|++|.+ +..|++++++..
T Consensus 79 ~~iG~~~~~l~~l~~g~~~~~~~~L~~-------~~~g~l~~~~~~ 117 (119)
T cd04036 79 DHLGTVLFDVSKLKLGEKVRVTFSLNP-------QGKEELEVEFLL 117 (119)
T ss_pred cccEEEEEEHHHCCCCCcEEEEEECCC-------CCCceEEEEEEe
Confidence 999999999999988878889999854 468998888764
No 13
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.70 E-value=3.1e-16 Score=145.47 Aligned_cols=122 Identities=19% Similarity=0.163 Sum_probs=101.9
Q ss_pred eeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecC
Q 006016 400 FVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSF 477 (664)
Q Consensus 400 ~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d 477 (664)
+.++|+|+|++|++|+.. .|.+||||++.++++. .+|++++++.||+|||+|.|.+.+. ...|.++|||++
T Consensus 1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~------~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~i~V~d~~ 73 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGES------VRSPVQKDTLSPEFDTQAIFYRKKP-RSPIKIQVWNSN 73 (126)
T ss_pred CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEE------EEeCccCCCCCCcccceEEEEecCC-CCEEEEEEEECC
Confidence 357999999999999987 7899999999998764 3799999999999999999988775 789999999998
Q ss_pred CCCCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEec
Q 006016 478 GFADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKAY 530 (664)
Q Consensus 478 ~~kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~ 530 (664)
..+|++||.+.+++.++.. ....++.|+......+++..|+|.+++++.+-
T Consensus 74 ~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 74 LLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 8889999999999988643 34566777532233466899999999988764
No 14
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.69 E-value=2.1e-16 Score=145.93 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=98.6
Q ss_pred EEEEEEeceecccc---cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-
Q 006016 404 LSVTLVDARKLFYI---YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF- 479 (664)
Q Consensus 404 L~VtV~~Ar~L~~~---~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~- 479 (664)
|.|+|.+|++|+.. .|.+||||.+.++++. .++|+++++|+||+|||+|.|.+.+. ...|.+.|||++..
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~-----~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEE-----VFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCcc-----EEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCCC
Confidence 67999999999985 4788999999997543 35799999999999999999999864 57999999999986
Q ss_pred CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 480 ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 480 kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
+|++||.+.++|+++..+...+.|++|+.. ...++..|+|++.+++
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~--~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYGKDTWFPLQPV--DADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCCcEeeEEEEcc--CCCCcccEEEEEEEEC
Confidence 899999999999999887778899999642 2234568999999864
No 15
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.69 E-value=3.1e-16 Score=145.24 Aligned_cols=122 Identities=19% Similarity=0.312 Sum_probs=101.7
Q ss_pred EEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-CCc
Q 006016 404 LSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-ADI 482 (664)
Q Consensus 404 L~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-kDd 482 (664)
|.|+|++|++|+...|.+||||+++++... ..++|++++++.||+|||+|.|.+... .+.|.++|||++.. +|+
T Consensus 1 l~v~v~~A~~L~~~~g~~dpyv~v~~~~~~----~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~~~~~ 75 (126)
T cd08678 1 LLVKNIKANGLSEAAGSSNPYCVLEMDEPP----QKYQSSTQKNTSNPFWDEHFLFELSPN-SKELLFEVYDNGKKSDSK 75 (126)
T ss_pred CEEEEEEecCCCCCCCCcCCEEEEEECCCC----cEEEeEEEecCCCCccCceEEEEeCCC-CCEEEEEEEECCCCCCCc
Confidence 579999999997766789999999997422 135899999999999999999998654 67899999999986 799
Q ss_pred eeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEecC
Q 006016 483 SIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKAYV 531 (664)
Q Consensus 483 ~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~ 531 (664)
+||++.++++++..+.....|++|+... ..+.+..|+|++++.|.+..
T Consensus 76 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~-~~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 76 FLGLAIVPFDELRKNPSGRQIFPLQGRP-YEGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred eEEEEEEeHHHhccCCceeEEEEecCCC-CCCCCcceEEEEEEEEeccc
Confidence 9999999999998876778899997531 12356799999999997644
No 16
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.69 E-value=2.9e-16 Score=151.69 Aligned_cols=122 Identities=21% Similarity=0.313 Sum_probs=102.1
Q ss_pred eeeEEEEEEEeceecccc--------------------------------cCCCCcEEEEEeccccccceeeeeeEEeCC
Q 006016 400 FVGELSVTLVDARKLFYI--------------------------------YGKPDPYVVLSLGDQIIRSKKNSQTTVFGP 447 (664)
Q Consensus 400 ~~GvL~VtV~~Ar~L~~~--------------------------------~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~ 447 (664)
-.|+|.|+|.+|++|+++ .|.+||||++.+++.. ..+|+++++
T Consensus 5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~-----~~rT~v~~~ 79 (158)
T cd04015 5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGAR-----VARTRVIEN 79 (158)
T ss_pred EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeE-----eeEEEEeCC
Confidence 369999999999999863 3557999999998754 247999999
Q ss_pred CCCccccceEEEEEecCCCcEEEEEEEecCCCCCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 448 PGEPIWNQDFHLLVANPRKQKLYIQVKDSFGFADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 448 tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
+.||+|||+|.|.+... .+.|.++|||++..++++||++.++++++..+...+.|++|.+.. ....+..|+|+++++|
T Consensus 80 ~~nP~WnE~F~~~~~~~-~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~-~~~~~~~~~l~v~~~f 157 (158)
T cd04015 80 SENPVWNESFHIYCAHY-ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSN-GKPPKPGAKIRVSLQF 157 (158)
T ss_pred CCCCccceEEEEEccCC-CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCC-CCCCCCCCEEEEEEEE
Confidence 99999999999998765 578999999999888899999999999998887789999996531 1122457899999998
Q ss_pred E
Q 006016 528 K 528 (664)
Q Consensus 528 ~ 528 (664)
+
T Consensus 158 ~ 158 (158)
T cd04015 158 T 158 (158)
T ss_pred C
Confidence 4
No 17
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.69 E-value=4e-16 Score=144.92 Aligned_cols=120 Identities=26% Similarity=0.382 Sum_probs=99.2
Q ss_pred eEEEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-C
Q 006016 402 GELSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-A 480 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-k 480 (664)
..|+|+|++|++|+.. +.+||||++.+++.. ..+|++ +++.||.|||+|.|.+..+..+.+.|.|||++.. +
T Consensus 4 ~~L~V~Vi~A~~L~~~-~~~DPYv~v~l~~~~-----~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~ 76 (126)
T cd08400 4 RSLQLNVLEAHKLPVK-HVPHPYCVISLNEVK-----VARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSK 76 (126)
T ss_pred eEEEEEEEEeeCCCCC-CCCCeeEEEEECCEe-----EEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCC
Confidence 4699999999999864 578999999997643 236887 4689999999999987665456899999999885 8
Q ss_pred CceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEe
Q 006016 481 DISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKA 529 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P 529 (664)
|++||.+.++|.++..+...+.|+.|.+. ...+.+..|+|+++++|.+
T Consensus 77 d~~iG~v~i~l~~l~~~~~~~~W~~L~~~-~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 77 DSEIAEVTVQLSKLQNGQETDEWYPLSSA-SPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred CCeEEEEEEEHhHccCCCcccEeEEcccC-CCCCCCcCcEEEEEEEEEc
Confidence 99999999999999887778899999653 1123467899999999986
No 18
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.68 E-value=2.7e-16 Score=145.71 Aligned_cols=117 Identities=21% Similarity=0.245 Sum_probs=98.2
Q ss_pred EEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC---CcEEEEEEEecCC
Q 006016 404 LSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR---KQKLYIQVKDSFG 478 (664)
Q Consensus 404 L~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~---~q~L~I~V~D~d~ 478 (664)
|.|+|++|++|+.. .|.+||||+++++++. ++|++++++.||+|||+|.|.+..+. ...|.++|||++.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~------~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDGQK------KRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECCEE------ecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 89999999999987 6889999999998754 36999999999999999999987542 3689999999987
Q ss_pred C--CCceeEeEEeecCccc-CCCccceEEEecCCcccCCCceeeEEEEEEEEE
Q 006016 479 F--ADISIGTGEVDLGSLK-DTVPTDRIVELRGGWGLFKNGFTGELLLRLTYK 528 (664)
Q Consensus 479 ~--kDd~LG~~~IdL~~L~-~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~ 528 (664)
. +|++||++.++++++. .+.....|++|++. ...++.+|+|++++.+.
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~--~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR--GLFSRVRGEIGLKVYIT 126 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC--CCCCCccEEEEEEEEEc
Confidence 5 7999999999999997 34556789999652 22345899999998763
No 19
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.68 E-value=4e-16 Score=149.54 Aligned_cols=121 Identities=26% Similarity=0.433 Sum_probs=100.1
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCC-CCCccccceEEEEEecCCCcEEEEEEEecCCC
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGP-PGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF 479 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~-tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~ 479 (664)
.|.|+|++|++|+.. .|.+||||+++++++. .+|+++.+ ++||+|||+|.|.+.++..+.|.++|||++..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~------~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~ 74 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQV------LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGP 74 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEE------eeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCC
Confidence 389999999999887 7899999999998754 36888866 69999999999999876567999999999985
Q ss_pred -CCceeEeEEeecCcccCC----CccceEEEecCCccc----CCCceeeEEEEEEEEEe
Q 006016 480 -ADISIGTGEVDLGSLKDT----VPTDRIVELRGGWGL----FKNGFTGELLLRLTYKA 529 (664)
Q Consensus 480 -kDd~LG~~~IdL~~L~~~----~~~d~~~~L~~~~~~----~~~k~~G~I~L~L~y~P 529 (664)
+|++||++.++|+++..+ ...++|++|.+.... ...+..|+|+++++|.+
T Consensus 75 ~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 75 NKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred CCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 899999999999998643 345899999764211 12367899999999974
No 20
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.67 E-value=4.9e-16 Score=143.45 Aligned_cols=113 Identities=27% Similarity=0.288 Sum_probs=97.0
Q ss_pred EEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCCCCce
Q 006016 404 LSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGFADIS 483 (664)
Q Consensus 404 L~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~kDd~ 483 (664)
|.|+|++|++|+.. .+||||++.++++. .+|++++++.||+|||+|.|.+..+..+.|.++|||++..+|++
T Consensus 2 L~V~Vi~a~~L~~~--~~Dpyv~v~l~~~~------~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~~~~~ 73 (121)
T cd08378 2 LYVRVVKARGLPAN--SNDPVVEVKLGNYK------GSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKAKDDF 73 (121)
T ss_pred EEEEEEEecCCCcc--cCCCEEEEEECCcc------ccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCCcCce
Confidence 88999999999877 78999999998643 37999999999999999999988766789999999999888999
Q ss_pred eEeEEeecCcccCCC-----ccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 484 IGTGEVDLGSLKDTV-----PTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 484 LG~~~IdL~~L~~~~-----~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
||++.++|+++.... ..+.|++|+.. .+.+..|+|++.+.|
T Consensus 74 lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~---~~~~~~G~i~l~~~~ 119 (121)
T cd08378 74 LGGVCFDLSEVPTRVPPDSPLAPQWYRLEDK---KGGRVGGELMLAVWF 119 (121)
T ss_pred eeeEEEEhHhCcCCCCCCCCCCcceEEccCC---CCCccceEEEEEEEe
Confidence 999999999986532 24689999763 225788999999976
No 21
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.67 E-value=7.3e-16 Score=143.47 Aligned_cols=123 Identities=29% Similarity=0.363 Sum_probs=100.0
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEecccc-ccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQI-IRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF 479 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~-~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~ 479 (664)
.|+|+|++|++|+.. .|.+||||++++.+.. ......++|++++++.||+|||+|.|.+... ...|.++|||++..
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~ 79 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL 79 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC
Confidence 389999999999987 6889999999997652 1111235899999999999999999998764 57899999999986
Q ss_pred -CCceeEeEEeecCcccCCCc------cceEEEecCCcccCCCceeeEEEEEEEEE
Q 006016 480 -ADISIGTGEVDLGSLKDTVP------TDRIVELRGGWGLFKNGFTGELLLRLTYK 528 (664)
Q Consensus 480 -kDd~LG~~~IdL~~L~~~~~------~d~~~~L~~~~~~~~~k~~G~I~L~L~y~ 528 (664)
+|++||.+.+++.++..... ...|++|++. ...++..|+|++++.|.
T Consensus 80 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~--~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 80 TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPR--SSKSRVKGHLRLYMAYL 133 (133)
T ss_pred CCCCeeEEEEEEHHHCCCcCccccccccchheeeeec--CCCCcceeEEEEEEeeC
Confidence 89999999999999976533 3579999742 22456899999999883
No 22
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.66 E-value=8.2e-16 Score=141.50 Aligned_cols=118 Identities=21% Similarity=0.247 Sum_probs=98.9
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF- 479 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~- 479 (664)
.|+|+|++|++|+.. .+.+||||++++++.. ++|++++++.||+|||+|.|.+.......|.|+|||++..
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~------~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQT------LETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVS 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEE------EeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCC
Confidence 389999999999887 6789999999997643 4799999999999999999999876568899999999875
Q ss_pred CCceeEeEEeecCcccCCCccceEEEecCCccc--CCCceeeEEEEEEE
Q 006016 480 ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGL--FKNGFTGELLLRLT 526 (664)
Q Consensus 480 kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~--~~~k~~G~I~L~L~ 526 (664)
+|++||.+.++|.++......+.|+.|...... ..++..|.|++.++
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 75 KNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 789999999999999876667889998653211 24578899998763
No 23
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.66 E-value=3.5e-16 Score=149.81 Aligned_cols=92 Identities=33% Similarity=0.543 Sum_probs=85.9
Q ss_pred eeeEEEEEEEeceecccc-c-CCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecC
Q 006016 400 FVGELSVTLVDARKLFYI-Y-GKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSF 477 (664)
Q Consensus 400 ~~GvL~VtV~~Ar~L~~~-~-G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d 477 (664)
+.|.|+|+|++|.+|..+ . +++||||++.+++++. ||+++++++||+|||.|.|.+.++ +..|+++|||+|
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~l------kT~~v~~n~NPeWNe~ltf~v~d~-~~~lkv~VyD~D 76 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKL------KTRVVYKNLNPEWNEELTFTVKDP-NTPLKVTVYDKD 76 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeee------eeeeecCCCCCcccceEEEEecCC-CceEEEEEEeCC
Confidence 579999999999999988 5 9999999999999875 689999999999999999999998 899999999999
Q ss_pred CC-CCceeEeEEeecCcccCCC
Q 006016 478 GF-ADISIGTGEVDLGSLKDTV 498 (664)
Q Consensus 478 ~~-kDd~LG~~~IdL~~L~~~~ 498 (664)
.+ +||++|.++|+|..+....
T Consensus 77 ~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 77 TFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCCcccccceeeeccHHHHHHh
Confidence 97 9999999999999987753
No 24
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.65 E-value=1.8e-15 Score=137.93 Aligned_cols=115 Identities=25% Similarity=0.312 Sum_probs=97.9
Q ss_pred eEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC
Q 006016 402 GELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF 479 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~ 479 (664)
|.|.|+|++|++|+.. .+.+||||++++++.. ++|++++++.||.|||+|.|.+.+. .+.|.++|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~------~~T~~~~~t~nP~W~e~f~~~~~~~-~~~l~~~v~d~~~~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNAR------LQTHTIYKTLNPEWNKIFTFPIKDI-HDVLEVTVYDEDKD 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEe------eecceecCCcCCccCcEEEEEecCc-CCEEEEEEEECCCC
Confidence 7899999999999987 7789999999997653 3799999999999999999998765 68999999999884
Q ss_pred -CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 480 -ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 480 -kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
++++||++.+++.++..+ ...|+.|.+. ....+..|+|.+++++
T Consensus 74 ~~~~~iG~~~~~l~~~~~~--~~~~~~l~~~--~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKNG--ERKWYALKDK--KLRTRAKGSILLEMDV 118 (119)
T ss_pred CCCceeeEEEEEHHHCCCC--CceEEECccc--CCCCceeeEEEEEEEe
Confidence 899999999999998654 4679998653 2244689999999876
No 25
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.64 E-value=1.8e-15 Score=139.90 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=87.3
Q ss_pred EEEEEEeceecccc-cCCCCcEEEEEecccccc-ceeeeeeEEeCCCCCccccceEEEEEecC---CCcEEEEEEEecCC
Q 006016 404 LSVTLVDARKLFYI-YGKPDPYVVLSLGDQIIR-SKKNSQTTVFGPPGEPIWNQDFHLLVANP---RKQKLYIQVKDSFG 478 (664)
Q Consensus 404 L~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~~-sk~~~kT~Vik~tlnPvWnEtf~f~V~~~---~~q~L~I~V~D~d~ 478 (664)
|+|+|++|++|+.. .|.+||||++++-+.... .+..++|+++++++||+|||+|.|.+... ....|.+.|||++.
T Consensus 2 L~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~ 81 (120)
T cd08395 2 VTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCF 81 (120)
T ss_pred EEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecc
Confidence 89999999999887 799999999998431111 12245899999999999999999999742 34679999999987
Q ss_pred C-CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 479 F-ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 479 ~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
. +|++||++.++|.++..+...+.|++|..
T Consensus 82 ~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 82 ARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 5 78999999999999998877888999854
No 26
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.64 E-value=2.9e-15 Score=139.73 Aligned_cols=113 Identities=24% Similarity=0.390 Sum_probs=97.4
Q ss_pred eeEEEEEEEeceecccc-c-----------CCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcE
Q 006016 401 VGELSVTLVDARKLFYI-Y-----------GKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQK 468 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~~-~-----------G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~ 468 (664)
.|.|+|+|++|++|+.. . |.+||||++.++++.. .+|++++++.||.|||+|.|.+.+ ...
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~-----~kT~~~~~t~~P~Wne~f~~~v~~--~~~ 75 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHI-----GKTSTKPKTNSPVWNEEFTTEVHN--GRN 75 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEE-----eEEeEcCCCCCCCcceeEEEEcCC--CCE
Confidence 58999999999999876 3 5789999999986542 478999999999999999999974 578
Q ss_pred EEEEEEecCCC-CCceeEeEEeecCcccC--CCccceEEEecCCcccCCCceeeEEEEEEEEEe
Q 006016 469 LYIQVKDSFGF-ADISIGTGEVDLGSLKD--TVPTDRIVELRGGWGLFKNGFTGELLLRLTYKA 529 (664)
Q Consensus 469 L~I~V~D~d~~-kDd~LG~~~IdL~~L~~--~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P 529 (664)
|.++|||++.. +|++||.+.++|.++.. +...+.|++|+ +.|+|+++++|..
T Consensus 76 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~---------~~G~l~l~~~~~~ 130 (132)
T cd04014 76 LELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE---------PQGKLHVKIELKG 130 (132)
T ss_pred EEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc---------CCcEEEEEEEEec
Confidence 99999998875 78999999999999987 45678899983 5799999999975
No 27
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.62 E-value=4.4e-15 Score=136.82 Aligned_cols=115 Identities=18% Similarity=0.284 Sum_probs=95.9
Q ss_pred EEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-C
Q 006016 404 LSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-A 480 (664)
Q Consensus 404 L~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-k 480 (664)
|.|+|++|++|+.. .|.+||||++.+++.. ..+|+++++++||+|||.|.|.+... .+.|.++|||++.. +
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~-----~~kT~v~~~t~nP~Wne~f~~~~~~~-~~~l~v~v~d~~~~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEV-----IIRTATVWKTLNPFWGEEYTVHLPPG-FHTVSFYVLDEDTLSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECCEe-----eeeeeeEcCCCCCcccceEEEeeCCC-CCEEEEEEEECCCCCC
Confidence 78999999999987 7899999999997643 34799999999999999999998754 57999999999985 8
Q ss_pred CceeEeEEeecCcccCC-CccceEEEecCCcccCCCceeeEEEEEEE
Q 006016 481 DISIGTGEVDLGSLKDT-VPTDRIVELRGGWGLFKNGFTGELLLRLT 526 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~~~-~~~d~~~~L~~~~~~~~~k~~G~I~L~L~ 526 (664)
|++||++.++++++... ...+.|+.|++. ....+..|+|++.++
T Consensus 76 d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~--~~~~~~~G~i~l~~~ 120 (121)
T cd04054 76 DDVIGKVSLTREVISAHPRGIDGWMNLTEV--DPDEEVQGEIHLELS 120 (121)
T ss_pred CCEEEEEEEcHHHhccCCCCCCcEEECeee--CCCCccccEEEEEEE
Confidence 99999999999888654 336789999652 223457899998875
No 28
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.62 E-value=2e-15 Score=139.54 Aligned_cols=105 Identities=21% Similarity=0.241 Sum_probs=89.1
Q ss_pred eeEEEEEEEeceecccc-cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEE-e--cCCCcEEEEEEEec
Q 006016 401 VGELSVTLVDARKLFYI-YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLV-A--NPRKQKLYIQVKDS 476 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V-~--~~~~q~L~I~V~D~ 476 (664)
.|.|.|+|++|++|+.. .+.+||||++++.....+. ..+||++++++.||+|||+|.|.+ . +.....|.++|||+
T Consensus 12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~-~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKT-TKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccC-CceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 58899999999999987 7889999999997543221 245899999999999999999987 2 33467899999999
Q ss_pred CCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 477 FGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 477 d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
+.. ++++||++.++|.++......+.|++|
T Consensus 91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 986 799999999999999877667889876
No 29
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.62 E-value=2.7e-15 Score=139.35 Aligned_cols=111 Identities=19% Similarity=0.273 Sum_probs=92.0
Q ss_pred CCCceeeEEEEEEEeceecccc---cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYI---YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLY 470 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~---~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~ 470 (664)
.+....|.|.|+|++|++|+.. .|.+||||++++.....+ ...+||++++++.||+|||+|.|.+... ....|.
T Consensus 9 ~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~-~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~ 87 (125)
T cd04029 9 SYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSR-QSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQ 87 (125)
T ss_pred EEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCcc-ccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEE
Confidence 3455678999999999999876 478999999998643321 1235899999999999999999998652 356899
Q ss_pred EEEEecCCC-CCceeEeEEeecCcccCCCccceEEEec
Q 006016 471 IQVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELR 507 (664)
Q Consensus 471 I~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~ 507 (664)
++|||++.. ++++||.+.++|.++......+.|++|+
T Consensus 88 ~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 88 LSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred EEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 999999985 8999999999999998887788999873
No 30
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=7.3e-15 Score=136.06 Aligned_cols=117 Identities=21% Similarity=0.240 Sum_probs=99.0
Q ss_pred EEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEEEEEecCCC-CCcee
Q 006016 408 LVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQVKDSFGF-ADISI 484 (664)
Q Consensus 408 V~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~V~D~d~~-kDd~L 484 (664)
|++|++|+...|.+||||++++++.. ++|++++++.||+|||+|.|.+... ..+.|.++|||++.. +|++|
T Consensus 2 vi~a~~L~~~~g~~Dpyv~v~~~~~~------~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~i 75 (127)
T cd08373 2 VVSLKNLPGLKGKGDRIAKVTFRGVK------KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLI 75 (127)
T ss_pred eEEeeCCcccCCCCCCEEEEEECCEe------eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceE
Confidence 57889988777789999999997653 3799999999999999999999754 478999999999985 88999
Q ss_pred EeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEecCCC
Q 006016 485 GTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKAYVED 533 (664)
Q Consensus 485 G~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~~~ 533 (664)
|++.++|+++..+.....|++|.+. .+....|+|++.++|.|....
T Consensus 76 G~~~~~l~~l~~~~~~~~~~~L~~~---~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 76 GSATVSLQDLVSEGLLEVTEPLLDS---NGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred EEEEEEhhHcccCCceEEEEeCcCC---CCCcccEEEEEEEEEeCCCCc
Confidence 9999999999887777889998642 123357999999999997754
No 31
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.61 E-value=5.5e-15 Score=141.05 Aligned_cols=106 Identities=22% Similarity=0.232 Sum_probs=89.2
Q ss_pred eeEEEEEEEeceecccc---cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEE-ec
Q 006016 401 VGELSVTLVDARKLFYI---YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVK-DS 476 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~~---~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~-D~ 476 (664)
.|.|.|+|++|++|+.. .|.+||||++++...... ...+||+++++++||+|||+|.|.+. .....|.++|| |+
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~-~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~ 105 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKC-IAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDY 105 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCcc-ccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCC
Confidence 58999999999999864 578999999999654321 12458999999999999999999998 55889999999 56
Q ss_pred CCC-CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 477 FGF-ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 477 d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
+.+ ++++||.+.++|+++..+.....|+.|.+
T Consensus 106 ~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 106 GRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCCCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence 665 88999999999999976666788999865
No 32
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.60 E-value=3e-15 Score=134.32 Aligned_cols=98 Identities=32% Similarity=0.476 Sum_probs=86.2
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCCC
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGFA 480 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~k 480 (664)
.|.|+|++|++|+.. .+.+||||+++++++. ++|++++++.||+|||+|.|.+.++..+.|.++|||++.
T Consensus 1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~------~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~-- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTT------QKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT-- 72 (105)
T ss_pred CEEEEEeeecCCCCcccCCCCCcEEEEEECCEE------EeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC--
Confidence 388999999999987 7889999999998743 369999999999999999999998767899999999986
Q ss_pred CceeEeEEeecCcccCCC--ccceEEEecC
Q 006016 481 DISIGTGEVDLGSLKDTV--PTDRIVELRG 508 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~~~~--~~d~~~~L~~ 508 (664)
|++||++.++|.++.... ..+.|++|.+
T Consensus 73 ~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 73 GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 889999999999997653 4578999865
No 33
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.60 E-value=2.5e-15 Score=138.15 Aligned_cols=107 Identities=13% Similarity=0.191 Sum_probs=86.7
Q ss_pred CCCceeeEEEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec--CCCcEEEEEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKLYIQV 473 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L~I~V 473 (664)
.+....|.|.|+|++|++|+ ..|.+||||++++.....+ ...+|+++++|+||+|||+|.|.+.. .....|.++|
T Consensus 8 ~Y~~~~~~L~V~vikA~~L~-~~g~sDPYVKv~L~~~~k~--~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V 84 (118)
T cd08677 8 SYDKQKAELHVNILEAENIS-VDAGCECYISGCVSVSEGQ--KEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL 84 (118)
T ss_pred EEcCcCCEEEEEEEEecCCC-CCCCCCeEEEEEEcCCcCc--cEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence 34455789999999999998 5566999999999753222 24589999999999999999999865 3467899999
Q ss_pred EecCCC-CCceeEeEEeecCcccCCCccceEEE
Q 006016 474 KDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVE 505 (664)
Q Consensus 474 ~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~ 505 (664)
||+|++ ++++||++.++++++......+.|..
T Consensus 85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred EeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 999997 99999999999998755545555643
No 34
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.60 E-value=3.5e-15 Score=135.34 Aligned_cols=99 Identities=29% Similarity=0.379 Sum_probs=83.7
Q ss_pred eEEEEEEEeceecccc--c-CCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC---CCcEEEEEEEe
Q 006016 402 GELSVTLVDARKLFYI--Y-GKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP---RKQKLYIQVKD 475 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~--~-G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~---~~q~L~I~V~D 475 (664)
|+|+|+|++|++|+.. . +.+||||++++.+.. +..++|+++++++||+|||+|.|.+... ..+.|.++|||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~---~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG---KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC---CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEe
Confidence 7899999999999987 5 899999999986542 2246899999999999999999988654 35789999999
Q ss_pred cCCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 476 SFGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 476 ~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
++.. +|++||.+.+++.++.. ...|+++
T Consensus 78 ~d~~~~dd~lG~~~i~l~~l~~---~~~~~~~ 106 (111)
T cd04041 78 SDRFTADDRLGRVEIDLKELIE---DRNWMGR 106 (111)
T ss_pred CCCCCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence 9986 89999999999999974 3456665
No 35
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.59 E-value=1.5e-14 Score=133.55 Aligned_cols=115 Identities=22% Similarity=0.294 Sum_probs=93.7
Q ss_pred EEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-C
Q 006016 404 LSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-A 480 (664)
Q Consensus 404 L~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-k 480 (664)
|+|+|++|++|+.. .+.+||||++++++. ..++|++++++.||.|||+|+|.+.. .+.|.++|||++.. +
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~-----~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGG-----QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKFKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECCc-----cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCCCC
Confidence 78999999999887 788999999999642 23579999999999999999999975 68999999999875 2
Q ss_pred --CceeEeEEeecCcccCCC-ccceEEEecCCcccCCCceeeEEEEEE
Q 006016 481 --DISIGTGEVDLGSLKDTV-PTDRIVELRGGWGLFKNGFTGELLLRL 525 (664)
Q Consensus 481 --Dd~LG~~~IdL~~L~~~~-~~d~~~~L~~~~~~~~~k~~G~I~L~L 525 (664)
|++||++.++++++.... ....|++|+...........|+|.+++
T Consensus 75 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 75 KDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 579999999999997643 336688885532223456789998876
No 36
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.59 E-value=9.7e-15 Score=139.73 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=94.6
Q ss_pred EEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEe---------------cCCCcE
Q 006016 404 LSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVA---------------NPRKQK 468 (664)
Q Consensus 404 L~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~---------------~~~~q~ 468 (664)
|.|+|++|++|+...|.+||||++++.+...+ +...+|+++++++||+|||+|.|.+. +.....
T Consensus 2 L~V~Vi~ArnL~~~~g~sDPYV~V~l~~~~~k-~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T cd04010 2 LSVRVIECSDLALKNGTCDPYASVTLIYSNKK-QDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE 80 (148)
T ss_pred EEEEEEeCcCCCCCCCCCCceEEEEEeCCccc-CcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence 78999999999877788999999999764211 12347999999999999999999985 122357
Q ss_pred EEEEEEecCCC-CCceeEeEEeecCcccCC-CccceEEEecCCccc--------CCCceeeEEEEEE
Q 006016 469 LYIQVKDSFGF-ADISIGTGEVDLGSLKDT-VPTDRIVELRGGWGL--------FKNGFTGELLLRL 525 (664)
Q Consensus 469 L~I~V~D~d~~-kDd~LG~~~IdL~~L~~~-~~~d~~~~L~~~~~~--------~~~k~~G~I~L~L 525 (664)
|.++|||++.. +|++||++.++|.++... ...+.|++|+..... .++...|.+++++
T Consensus 81 L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 81 LRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEec
Confidence 99999999985 899999999999999876 567889999653211 1234567777664
No 37
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.59 E-value=5.7e-15 Score=136.97 Aligned_cols=110 Identities=22% Similarity=0.244 Sum_probs=90.4
Q ss_pred CCceeeEEEEEEEeceecccc--c-CCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec--CCCcEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--Y-GKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKLYI 471 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~-G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L~I 471 (664)
+....+.|.|+|++|++|+.. . |.+||||++++...... ...+||+++++++||+|||+|.|.+.. .....|.+
T Consensus 10 y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~-~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~ 88 (125)
T cd08393 10 YDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSN-RGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNL 88 (125)
T ss_pred EECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCc-cccccCccCcCCCCCccCceEEEECCHHHhCCCEEEE
Confidence 344568899999999999987 3 78999999999644321 123589999999999999999999864 33578999
Q ss_pred EEEecCCC-CCceeEeEEeecCcccCCCccceEEEec
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELR 507 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~ 507 (664)
+|||++.. ++++||.+.++|.++........|++|+
T Consensus 89 ~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 89 SVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred EEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 99999985 8899999999999997766677898873
No 38
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.59 E-value=2.3e-14 Score=132.19 Aligned_cols=115 Identities=23% Similarity=0.303 Sum_probs=95.7
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF- 479 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~- 479 (664)
.|+|+|++|++|+.. .+.+||||++.+.+.. +..++|++++++.||.|||+|.|.+.....+.|.|+|||++..
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~---~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGK---RRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCC---eeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCC
Confidence 589999999999987 7889999999876532 2346899999999999999999999876568899999999986
Q ss_pred CCceeEeEEeecCcccC---CCccceEEEecCCcccCCCceeeEEEEEEEEEe
Q 006016 480 ADISIGTGEVDLGSLKD---TVPTDRIVELRGGWGLFKNGFTGELLLRLTYKA 529 (664)
Q Consensus 480 kDd~LG~~~IdL~~L~~---~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P 529 (664)
+|++||++.++|.++.. +...+.|+.|. +.|++++++.|.-
T Consensus 79 ~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~---------~~g~i~l~~~~~~ 122 (126)
T cd04043 79 KHDLCGRASLKLDPKRFGDDGLPREIWLDLD---------TQGRLLLRVSMEG 122 (126)
T ss_pred CCceEEEEEEecCHHHcCCCCCCceEEEEcC---------CCCeEEEEEEEee
Confidence 89999999999998643 23457898883 4699999998853
No 39
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.59 E-value=7.2e-15 Score=135.41 Aligned_cols=108 Identities=24% Similarity=0.295 Sum_probs=91.3
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQ 472 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~ 472 (664)
+....|.|.|+|++|++|+.. .|.+||||++++..... ..++|++++++.||+|||+|.|.+... ....|.++
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~---~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~ 87 (124)
T cd08387 11 YDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS---NTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVL 87 (124)
T ss_pred ECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC---CcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEE
Confidence 344568999999999999987 78899999999953321 235899999999999999999988643 35689999
Q ss_pred EEecCCC-CCceeEeEEeecCcccCCCccceEEEec
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELR 507 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~ 507 (664)
|||++.. +|++||.+.++|+++..+...+.|+.|+
T Consensus 88 V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 88 LYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred EEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 9999986 8999999999999998777788999884
No 40
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.58 E-value=8.6e-15 Score=132.72 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=78.4
Q ss_pred eEEEEEEEeceecccc-c-----CCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC-CcEEEEEEE
Q 006016 402 GELSVTLVDARKLFYI-Y-----GKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR-KQKLYIQVK 474 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~-~-----G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~-~q~L~I~V~ 474 (664)
|+|.|+|++|++|+.. . +.+||||+++++++. +||+++++++||+|||+|.|.+.+.. ...|.++||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~------~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~ 74 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRV------FRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVL 74 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEe------EeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEE
Confidence 7999999999999975 1 358999999996543 47999999999999999999987543 457999999
Q ss_pred ecCCC-CCceeEeEEeecCcccCCC
Q 006016 475 DSFGF-ADISIGTGEVDLGSLKDTV 498 (664)
Q Consensus 475 D~d~~-kDd~LG~~~IdL~~L~~~~ 498 (664)
|++.. +|++||++.++|++|..+.
T Consensus 75 D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 75 DKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred ECCCCCCCcceEEEEEEHHHHHhhC
Confidence 99985 8999999999999997753
No 41
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.57 E-value=2.7e-14 Score=132.64 Aligned_cols=112 Identities=25% Similarity=0.417 Sum_probs=93.1
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCC--
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFG-- 478 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~-- 478 (664)
.|+|+|++|++|+.. .|.+||||++++++.. ++|++++++.||+|||+|.|.+..+ .+.|.++|||++.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~------~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~ 74 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTK------KRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDI 74 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEe------eecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCc
Confidence 589999999999987 7889999999997543 4799999999999999999998765 5789999999984
Q ss_pred ----------CCCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEE
Q 006016 479 ----------FADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRL 525 (664)
Q Consensus 479 ----------~kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L 525 (664)
.+|++||.+.+++.++.. ..+.|+.|... ....+.+|+|.+++
T Consensus 75 ~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~--~~~~~~~G~i~~~~ 127 (127)
T cd04027 75 KSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKR--TDKSAVSGAIRLHI 127 (127)
T ss_pred ccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccC--CCCCcEeEEEEEEC
Confidence 268999999999998753 35789999653 23446899999874
No 42
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=1.4e-14 Score=131.51 Aligned_cols=101 Identities=26% Similarity=0.379 Sum_probs=87.2
Q ss_pred cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCCCCceeEeEEeecCcccCC
Q 006016 418 YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGFADISIGTGEVDLGSLKDT 497 (664)
Q Consensus 418 ~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~kDd~LG~~~IdL~~L~~~ 497 (664)
.|.+||||.+.++++. ..+|++++++.||+|||+|.|.+.+...+.|.|+|||++..+|++||.+.++|.++...
T Consensus 10 ~G~~dPYv~v~v~~~~-----~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~ 84 (111)
T cd04052 10 TGLLSPYAELYLNGKL-----VYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDA 84 (111)
T ss_pred CCCCCceEEEEECCEE-----EEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhh
Confidence 6889999999998753 24788999999999999999999887678899999999988899999999999998653
Q ss_pred -CccceEEEecCCcccCCCceeeEEEEEEEEEec
Q 006016 498 -VPTDRIVELRGGWGLFKNGFTGELLLRLTYKAY 530 (664)
Q Consensus 498 -~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~ 530 (664)
...+.|+.|.+ ++.|+|+++++|.|+
T Consensus 85 ~~~~~~w~~L~~-------~~~G~i~~~~~~~p~ 111 (111)
T cd04052 85 TSVGQQWFPLSG-------NGQGRIRISALWKPV 111 (111)
T ss_pred hhccceeEECCC-------CCCCEEEEEEEEecC
Confidence 34578999854 468999999999985
No 43
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.56 E-value=6.3e-14 Score=131.56 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=94.0
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC---------CCcEEEE
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP---------RKQKLYI 471 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~---------~~q~L~I 471 (664)
.|+|+|++|++|+.. .|.+||||+++++++. ++|++++++.||.|||+|.|.+... ....|.+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~------~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v 75 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQS------QETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVV 75 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECCee------eEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEE
Confidence 489999999999887 7899999999997653 4799999999999999999975432 1257999
Q ss_pred EEEecCCC-CCceeEeEEe-ecCcccC---CCccceEEEecCCcccCCCceeeEEEEEEEEEec
Q 006016 472 QVKDSFGF-ADISIGTGEV-DLGSLKD---TVPTDRIVELRGGWGLFKNGFTGELLLRLTYKAY 530 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~I-dL~~L~~---~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~ 530 (664)
+|||++.. +|++||++.+ ++..+.. .....+|++|... +..+|+|.+.+.+.+.
T Consensus 76 ~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~-----~~~~Geil~~~~~~~~ 134 (135)
T cd04017 76 ELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG-----GQSAGELLAAFELIEV 134 (135)
T ss_pred EEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC-----CCchhheeEEeEEEEe
Confidence 99999985 8899999987 4444432 2456789999642 3579999999999875
No 44
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.55 E-value=2.1e-14 Score=132.14 Aligned_cols=108 Identities=25% Similarity=0.261 Sum_probs=90.9
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQ 472 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~ 472 (664)
+....|.|.|+|++|++|+.. .|.+||||++++.+... ..++|++++++.||+|||+|.|.+... ....|.++
T Consensus 11 y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~---~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~ 87 (124)
T cd08385 11 YDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFS 87 (124)
T ss_pred EeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC---CceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEE
Confidence 344568999999999999977 78899999999865432 245899999999999999999998642 35689999
Q ss_pred EEecCCC-CCceeEeEEeecCcccCCCccceEEEec
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELR 507 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~ 507 (664)
|||++.+ +|++||++.++|+++..+...+.|+.|.
T Consensus 88 V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 88 VYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred EEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 9999986 8899999999999997776778898873
No 45
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.55 E-value=2.5e-14 Score=137.59 Aligned_cols=107 Identities=25% Similarity=0.335 Sum_probs=90.4
Q ss_pred CCCceeeEEEEEEEeceecccc--cCCCCcEEEEEecccccc-----------------------ceeeeeeEEeCCCCC
Q 006016 396 RNEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIR-----------------------SKKNSQTTVFGPPGE 450 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~-----------------------sk~~~kT~Vik~tln 450 (664)
....+.+.|.|+|++|++|... .|.+||||++.+.....+ ....++|+++++++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 4567899999999999999987 789999999998643211 113578999999999
Q ss_pred ccccceEEEEEecCCCcEEEEEEEecCCCCCceeEeEEeecCcccCCCccceEEEe
Q 006016 451 PIWNQDFHLLVANPRKQKLYIQVKDSFGFADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 451 PvWnEtf~f~V~~~~~q~L~I~V~D~d~~kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
|.|||+|.|.+..+..+.|.|+|||++ |++||++.++++++... ..+.|+.|
T Consensus 102 P~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~-~~d~W~~L 153 (153)
T cd08676 102 PVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPSC-GLDSWFKL 153 (153)
T ss_pred CccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCCC-CCCCeEeC
Confidence 999999999998766789999999998 89999999999999843 46888875
No 46
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.54 E-value=1.9e-14 Score=132.62 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=87.7
Q ss_pred eeeEEEEEEEeceecccc-cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC-CcEEEEEEEecC
Q 006016 400 FVGELSVTLVDARKLFYI-YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR-KQKLYIQVKDSF 477 (664)
Q Consensus 400 ~~GvL~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~-~q~L~I~V~D~d 477 (664)
..|.|.|+|++|++|+.. .|.+||||++++...... ...+||++++++.||+|||+|.|.+.... ...|.++|||++
T Consensus 10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~-~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~ 88 (119)
T cd08685 10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEV-RFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL 88 (119)
T ss_pred cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCC-cceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence 357899999999999888 788999999999764322 23458999999999999999999986432 357899999998
Q ss_pred CC--CCceeEeEEeecCcccCCCccceEEEe
Q 006016 478 GF--ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 478 ~~--kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
.. ++++||.+.++|.++..+...+.||.|
T Consensus 89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 75 478999999999999866667888875
No 47
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.54 E-value=2.9e-14 Score=131.53 Aligned_cols=109 Identities=24% Similarity=0.261 Sum_probs=90.8
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQ 472 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~ 472 (664)
+....+.|.|+|++|++|+.. .+.+||||++.+.+... ....++|++++++.||+|||+|.|.+... ....|.++
T Consensus 11 y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~ 89 (127)
T cd04030 11 YSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKS-KSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVA 89 (127)
T ss_pred EeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCC-CCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEE
Confidence 344568999999999999988 68899999999865321 12346899999999999999999998643 35789999
Q ss_pred EEecCC---CCCceeEeEEeecCcccCCCccceEEEe
Q 006016 473 VKDSFG---FADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 473 V~D~d~---~kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
|||++. .+|++||.+.++|+++..+...+.|++|
T Consensus 90 v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 90 VKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred EEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 999986 3799999999999999777677889887
No 48
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.54 E-value=2.5e-14 Score=129.53 Aligned_cols=99 Identities=25% Similarity=0.358 Sum_probs=84.4
Q ss_pred EEEEEEeceecccc---cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccc-cceEEEEEecC--CCcEEEEEEEecC
Q 006016 404 LSVTLVDARKLFYI---YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIW-NQDFHLLVANP--RKQKLYIQVKDSF 477 (664)
Q Consensus 404 L~VtV~~Ar~L~~~---~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvW-nEtf~f~V~~~--~~q~L~I~V~D~d 477 (664)
|.|+|++|++|+.. .|.+||||+++++++ .++|+++++++||+| ||+|.|.+... ..+.|.|+|||++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~------~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d 74 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGST------TYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD 74 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECCe------eEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC
Confidence 67999999999876 578899999999763 347999999999999 99999998764 2578999999999
Q ss_pred CC-CCceeEeEEeecCcccC---CCccceEEEecC
Q 006016 478 GF-ADISIGTGEVDLGSLKD---TVPTDRIVELRG 508 (664)
Q Consensus 478 ~~-kDd~LG~~~IdL~~L~~---~~~~d~~~~L~~ 508 (664)
.. +|++||++.+++.++.. +...+.|++|.+
T Consensus 75 ~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 75 TYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 85 88999999999999977 344678998854
No 49
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.54 E-value=4.3e-14 Score=131.36 Aligned_cols=99 Identities=21% Similarity=0.227 Sum_probs=83.9
Q ss_pred eEEEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCCCC
Q 006016 402 GELSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGFAD 481 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~kD 481 (664)
|.|.|+|++|++|+.. +..||||.+.+++++ .+|++.++ .||.|||+|.|.+.+. ...|.|+|||++..+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~-~~~dPYV~Ik~g~~k------~kT~v~~~-~nP~WnE~F~F~~~~~-~~~L~v~V~dkd~~~D 72 (127)
T cd08394 2 SLLCVLVKKAKLDGAP-DKFNTYVTLKVQNVK------STTIAVRG-SQPCWEQDFMFEINRL-DLGLVIELWNKGLIWD 72 (127)
T ss_pred ceEEEEEEEeeCCCCC-CCCCCeEEEEECCEE------eEeeECCC-CCCceeeEEEEEEcCC-CCEEEEEEEeCCCcCC
Confidence 6899999999999654 445999999998754 36888877 5999999999999876 5669999999998899
Q ss_pred ceeEeEEeecCcccCCCcc--ceEEEecCC
Q 006016 482 ISIGTGEVDLGSLKDTVPT--DRIVELRGG 509 (664)
Q Consensus 482 d~LG~~~IdL~~L~~~~~~--d~~~~L~~~ 509 (664)
++||++.++|.++...... .+|++|+.+
T Consensus 73 D~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~ 102 (127)
T cd08394 73 TLVGTVWIPLSTIRQSNEEGPGEWLTLDSE 102 (127)
T ss_pred CceEEEEEEhHHcccCCCCCCCccEecChH
Confidence 9999999999999765444 789999653
No 50
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.54 E-value=3.3e-14 Score=130.72 Aligned_cols=109 Identities=22% Similarity=0.199 Sum_probs=86.8
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC---CCcEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP---RKQKLYI 471 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~---~~q~L~I 471 (664)
+....|.|.|+|++|++|+.. .+.+||||++++.+... ....++|++++++.||+|||+|.|.+... ....|.+
T Consensus 11 ~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~ 89 (125)
T cd04031 11 YDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRS-EKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEV 89 (125)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCC-ccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEE
Confidence 344568999999999999887 77899999999975322 12345899999999999999999986432 3578999
Q ss_pred EEEecCCC-CCceeEeEEeecCcccCCCccceEEEec
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELR 507 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~ 507 (664)
+|||++.. +|++||++.++|++... .....|++|+
T Consensus 90 ~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 90 TVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred EEEeCCCCCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 99999985 78999999999998332 2346788873
No 51
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.54 E-value=2.3e-14 Score=133.23 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=90.1
Q ss_pred CCCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYI 471 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I 471 (664)
.+....|.|.|+|++|+||+.. .|.+||||++++-....+.+..+||++++++.||+|||+|.|.+... ....|.+
T Consensus 8 ~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~ 87 (124)
T cd08680 8 RYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQV 87 (124)
T ss_pred EECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEE
Confidence 3445568899999999999987 67899999999876543222356899999999999999999998643 4679999
Q ss_pred EEEecCCC-CCceeEeEEeecCcccCCC-ccceEEEe
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSLKDTV-PTDRIVEL 506 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L~~~~-~~d~~~~L 506 (664)
+|||++.. ++++||.+.++|+++.... ....|+.|
T Consensus 88 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 88 DVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred EEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 99999885 8999999999999995543 35567654
No 52
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.54 E-value=3.1e-14 Score=131.29 Aligned_cols=112 Identities=24% Similarity=0.287 Sum_probs=92.4
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeC-CCCCccccceEEEEEecCC----CcEEEEEEEe
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFG-PPGEPIWNQDFHLLVANPR----KQKLYIQVKD 475 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik-~tlnPvWnEtf~f~V~~~~----~q~L~I~V~D 475 (664)
.|+|+|++|++|+.. .++.||||++++++.. .++|++.. ++.||.|||+|.|.+.... ...|.++|||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~-----~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d 75 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSH-----KQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYC 75 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECCCc-----ccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEE
Confidence 489999999999987 7899999999998721 13688774 5899999999999997763 6889999999
Q ss_pred cCC-CCCceeEeEEeecCcccCCCcc-----ceEEEecCCcccCCCceeeEEEE
Q 006016 476 SFG-FADISIGTGEVDLGSLKDTVPT-----DRIVELRGGWGLFKNGFTGELLL 523 (664)
Q Consensus 476 ~d~-~kDd~LG~~~IdL~~L~~~~~~-----d~~~~L~~~~~~~~~k~~G~I~L 523 (664)
++. .+|++||.+.++|.++..+... ..|+.|.+. .++.+|.|++
T Consensus 76 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~----~g~~~G~~~~ 125 (125)
T cd04051 76 ERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRP----SGKPQGVLNF 125 (125)
T ss_pred CCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECC----CCCcCeEEeC
Confidence 987 4899999999999999876443 578888652 4688999875
No 53
>PLN03008 Phospholipase D delta
Probab=99.54 E-value=4.5e-14 Score=163.12 Aligned_cols=129 Identities=22% Similarity=0.382 Sum_probs=108.8
Q ss_pred ceeeEEEEEEEeceecccc--------------------------------------------cCCCCcEEEEEeccccc
Q 006016 399 DFVGELSVTLVDARKLFYI--------------------------------------------YGKPDPYVVLSLGDQII 434 (664)
Q Consensus 399 ~~~GvL~VtV~~Ar~L~~~--------------------------------------------~G~sDPYV~vsl~~~~~ 434 (664)
.-.|.|.++|.+|++|+++ .+++||||++.+++++
T Consensus 11 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~r- 89 (868)
T PLN03008 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQAT- 89 (868)
T ss_pred EeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCcc-
Confidence 3579999999999988741 1356999999998754
Q ss_pred cceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCCCCceeEeEEeecCcccCCCccceEEEecCCcccCC
Q 006016 435 RSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGFADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFK 514 (664)
Q Consensus 435 ~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~ 514 (664)
+.||+++++++||+|||+|+|.+.++ ...|.++|||+|.+++++||++.++|+++..+...+.|++|.+... ..
T Consensus 90 ----v~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~-kp 163 (868)
T PLN03008 90 ----LARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASG-KP 163 (868)
T ss_pred ----eeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCC-CC
Confidence 34799999999999999999999986 5799999999999888999999999999999888899999976421 12
Q ss_pred CceeeEEEEEEEEEecCCCC
Q 006016 515 NGFTGELLLRLTYKAYVEDE 534 (664)
Q Consensus 515 ~k~~G~I~L~L~y~P~~~~e 534 (664)
.+..|+|+++|+|+|+.++.
T Consensus 164 ~k~~~kl~v~lqf~pv~~~~ 183 (868)
T PLN03008 164 PKAETAIFIDMKFTPFDQIH 183 (868)
T ss_pred CCCCcEEEEEEEEEEccccc
Confidence 35678999999999999864
No 54
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.53 E-value=1.1e-13 Score=133.26 Aligned_cols=123 Identities=21% Similarity=0.311 Sum_probs=93.3
Q ss_pred EEEEEecee--cccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC--------CcEEEEE
Q 006016 405 SVTLVDARK--LFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR--------KQKLYIQ 472 (664)
Q Consensus 405 ~VtV~~Ar~--L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~--------~q~L~I~ 472 (664)
.++|..|++ |+.. .+.+||||++++.-... .....||+++++|+||+|||+|.|.+.... ...|.++
T Consensus 5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~-~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNE-EPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCC-CCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 345555555 5555 67899999999721111 122468999999999999999999996531 4679999
Q ss_pred EEecCCC--CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEecCC
Q 006016 473 VKDSFGF--ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKAYVE 532 (664)
Q Consensus 473 V~D~d~~--kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~~ 532 (664)
|||++.+ +|++||++.++|+.+..+.....|++|.++ .+...|+|+++++......
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~----~k~~Gg~l~v~ir~r~p~~ 141 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG----RKATGGKLEVKVRLREPLT 141 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC----CCCcCCEEEEEEEecCCCc
Confidence 9999985 799999999999999887667779988643 3456789999999864443
No 55
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=1e-13 Score=127.84 Aligned_cols=100 Identities=25% Similarity=0.396 Sum_probs=87.5
Q ss_pred eEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC
Q 006016 402 GELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF 479 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~ 479 (664)
|+|+|+|++|++|+.. .+.+||||++.+++.. .++|++++++.||.|||+|.|.+... .+.|.|+|||++..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~-----~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIV-----KGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEE-----eeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCC
Confidence 7899999999999987 7899999999996532 35799999999999999999998776 68999999999986
Q ss_pred -CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 480 -ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 480 -kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
+|++||.+.++|.++..+ ..+.||.|.+
T Consensus 75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 889999999999999886 5677887755
No 56
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.52 E-value=4.3e-14 Score=132.00 Aligned_cols=109 Identities=19% Similarity=0.173 Sum_probs=88.6
Q ss_pred CCceeeEEEEEEEeceecccc--c-CCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--Y-GKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYI 471 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~-G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I 471 (664)
+....+.|.|+|++|++|+.. . |.+||||++++....... ...||++++++.||+|||+|.|.+... ....|.+
T Consensus 10 Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~-~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v 88 (128)
T cd08392 10 YNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHN-SKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQV 88 (128)
T ss_pred EeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCccc-ceeecccccCCCCCccceEEEEEcCHHHhCCcEEEE
Confidence 444568999999999999877 3 889999999997554222 245899999999999999999998653 3568999
Q ss_pred EEEecCCC-CCceeEeEEeecCcccCCC---ccceEEEe
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSLKDTV---PTDRIVEL 506 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L~~~~---~~d~~~~L 506 (664)
.|||++.. ++++||++.++|.++.... ....||+|
T Consensus 89 ~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 89 SVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred EEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 99999975 8899999999999985532 34678876
No 57
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.52 E-value=1.1e-13 Score=125.50 Aligned_cols=110 Identities=26% Similarity=0.391 Sum_probs=92.7
Q ss_pred EEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-C
Q 006016 404 LSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-A 480 (664)
Q Consensus 404 L~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-k 480 (664)
|+|+|++|++|+.. .+.+||||++.+.+.. .++|+++.++.+|+|||+|.|.+.....+.+.++|||++.. +
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~-----~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEK-----VFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCc-----ceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCC
Confidence 57899999999887 6789999999997632 35799999999999999999999876578999999999975 8
Q ss_pred CceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEE
Q 006016 481 DISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELL 522 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~ 522 (664)
+++||++.+++.++..+...+.|++|... ++...|.+.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~~~~L~~~----g~~~~~~~~ 113 (115)
T cd04040 76 DDLLGSAYIDLSDLEPEETTELTLPLDGQ----GGGKLGAVF 113 (115)
T ss_pred CCceEEEEEEHHHcCCCCcEEEEEECcCC----CCccCceEE
Confidence 99999999999999887777889998542 345566664
No 58
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.51 E-value=1.5e-13 Score=131.05 Aligned_cols=90 Identities=38% Similarity=0.606 Sum_probs=81.3
Q ss_pred eeEEEEEEEeceecccc-cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC
Q 006016 401 VGELSVTLVDARKLFYI-YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF 479 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~ 479 (664)
.|.|+|+|++|++|+.. .+.+||||+++++++. ++|++++++.||+|||+|.|.+.++ .+.+.++|||++.+
T Consensus 1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~------~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~ 73 (145)
T cd04038 1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQK------VKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTF 73 (145)
T ss_pred CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEE------EEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCC
Confidence 38999999999999877 7789999999998754 4799999999999999999999887 78999999999986
Q ss_pred -CCceeEeEEeecCcccCC
Q 006016 480 -ADISIGTGEVDLGSLKDT 497 (664)
Q Consensus 480 -kDd~LG~~~IdL~~L~~~ 497 (664)
+|++||++.+++.++...
T Consensus 74 ~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCCCEEEEEEEEHHHhhhh
Confidence 899999999999998664
No 59
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.51 E-value=6.2e-14 Score=128.49 Aligned_cols=109 Identities=20% Similarity=0.298 Sum_probs=88.9
Q ss_pred CCceeeEEEEEEEeceecccc---cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI---YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYI 471 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~---~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I 471 (664)
+....|.|.|+|++|++|+.. .+.+||||++++.+.... ...++|++++++.||+|||+|.|.+... ....|.+
T Consensus 9 y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~-~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i 87 (123)
T cd08521 9 YNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSK-QSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQL 87 (123)
T ss_pred EeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCc-CceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEE
Confidence 344568999999999999875 578899999998543221 1245899999999999999999988653 2568999
Q ss_pred EEEecCCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
+|||++.. ++++||.+.++|+++..+...+.||+|
T Consensus 88 ~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 88 SVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred EEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 99999975 889999999999999776667889875
No 60
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.51 E-value=1.1e-13 Score=127.64 Aligned_cols=101 Identities=31% Similarity=0.448 Sum_probs=87.8
Q ss_pred eEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeC-CCCCccccceEEEEEecC---CCcEEEEEEEe
Q 006016 402 GELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFG-PPGEPIWNQDFHLLVANP---RKQKLYIQVKD 475 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik-~tlnPvWnEtf~f~V~~~---~~q~L~I~V~D 475 (664)
|.|.|+|++|++|+.. .+.+||||+++++++. ++|++.+ ++.||+|||+|.|.+..+ ..+.|.|+|||
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~------~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d 74 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQE------RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMD 74 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEe------eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEE
Confidence 7899999999999987 7789999999997653 3577777 489999999999999876 35789999999
Q ss_pred cCCC-CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 476 SFGF-ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 476 ~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
.+.. +|++||.+.++|.++..+...+.|+.|..
T Consensus 75 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 75 KDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 9886 89999999999999988777788998854
No 61
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.51 E-value=1.1e-13 Score=127.55 Aligned_cols=108 Identities=23% Similarity=0.248 Sum_probs=89.3
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec---CCCcEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN---PRKQKLYI 471 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~---~~~q~L~I 471 (664)
+....+.|.|+|++|++|+.. .+.+||||++.+..... ...+|++++++.||+|||+|.|.+.. .....|.+
T Consensus 11 y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~---~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~ 87 (125)
T cd08386 11 YDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK---HKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYL 87 (125)
T ss_pred ECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC---cceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEE
Confidence 344568999999999999877 78899999999853322 13589999999999999999997532 23567999
Q ss_pred EEEecCCC-CCceeEeEEeecCcccCCCccceEEEec
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELR 507 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~ 507 (664)
+|||++.. ++++||.+.+++.++..+...+.|+.|+
T Consensus 88 ~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 88 QVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred EEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 99999975 8899999999999998777778899874
No 62
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.50 E-value=1e-13 Score=129.19 Aligned_cols=108 Identities=20% Similarity=0.229 Sum_probs=86.0
Q ss_pred CCceeeEEEEEEEeceecccc--c-CCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEE-Eec--CCCcEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--Y-GKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLL-VAN--PRKQKLY 470 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~-G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~-V~~--~~~q~L~ 470 (664)
+....+.|.|+|++|++|+.. . |.+||||++.+..... ...||++++++.||+|||+|.|. +.. .....|.
T Consensus 11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~---~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~ 87 (128)
T cd08388 11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE---HKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLH 87 (128)
T ss_pred EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC---ceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEE
Confidence 334468999999999999986 4 7899999999864432 23589999999999999999993 432 2245799
Q ss_pred EEEEecCCC-CCceeEeEEeecCcccCC--CccceEEEec
Q 006016 471 IQVKDSFGF-ADISIGTGEVDLGSLKDT--VPTDRIVELR 507 (664)
Q Consensus 471 I~V~D~d~~-kDd~LG~~~IdL~~L~~~--~~~d~~~~L~ 507 (664)
++|||++.. +|++||++.++|+++.-. .+...|++|+
T Consensus 88 ~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 88 FAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred EEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 999999876 899999999999998554 4556777764
No 63
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.49 E-value=1.3e-13 Score=133.79 Aligned_cols=110 Identities=23% Similarity=0.246 Sum_probs=90.2
Q ss_pred CceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec---CCCcEEEEE
Q 006016 398 EDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN---PRKQKLYIQ 472 (664)
Q Consensus 398 ~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~---~~~q~L~I~ 472 (664)
....|.|.|+|++|++|+.. .|.+||||++++..... ....++|++++++.||+|||+|.|.+.. .....|.|+
T Consensus 23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~-~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~ 101 (162)
T cd04020 23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKS-KKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELT 101 (162)
T ss_pred CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCC-CCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence 34689999999999999987 78899999999853221 1234689999999999999999998532 234689999
Q ss_pred EEecCCC-CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
|||++.. +|++||++.+++.++......+.|+.+.+
T Consensus 102 V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 102 VWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred EEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence 9999986 79999999999999987767788888754
No 64
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.48 E-value=1.9e-13 Score=127.55 Aligned_cols=92 Identities=26% Similarity=0.258 Sum_probs=79.8
Q ss_pred CceeeEEEEEEEeceecccc-cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec-CCCcEEEEEEEe
Q 006016 398 EDFVGELSVTLVDARKLFYI-YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN-PRKQKLYIQVKD 475 (664)
Q Consensus 398 ~~~~GvL~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~-~~~q~L~I~V~D 475 (664)
....|.|+|+|++|++|+.. .+.+||||+++++++. ++|++++++.||+|||+|.|.... ...+.|.|+|||
T Consensus 24 ~~~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~------~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D 97 (127)
T cd04032 24 RRGLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQE------KRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWD 97 (127)
T ss_pred cCCcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCcc------ccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEe
Confidence 45789999999999999865 7889999999997653 479999999999999999997433 347899999999
Q ss_pred cCCC-CCceeEeEEeecCccc
Q 006016 476 SFGF-ADISIGTGEVDLGSLK 495 (664)
Q Consensus 476 ~d~~-kDd~LG~~~IdL~~L~ 495 (664)
++.. +|++||++.++|....
T Consensus 98 ~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 98 RDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCCCeeEEEEEEecCCc
Confidence 9986 9999999999999654
No 65
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.48 E-value=4e-13 Score=121.94 Aligned_cols=113 Identities=25% Similarity=0.305 Sum_probs=87.0
Q ss_pred EEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC--CcEEEEEEEecCCC-C
Q 006016 404 LSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR--KQKLYIQVKDSFGF-A 480 (664)
Q Consensus 404 L~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~--~q~L~I~V~D~d~~-k 480 (664)
|.|+|++|++|+.. |.+||||.++++++. .++|+++++ .||.|||+|.|.+.... ...|.+.+||.+.. +
T Consensus 2 L~v~vi~a~~l~~~-~~~dpyv~v~~~~~~-----~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK-GTRDPYCTVSLDQVE-----VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDR 74 (117)
T ss_pred eEEEEEEecCCCcC-CCCCceEEEEECCEE-----eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCC
Confidence 78999999999987 889999999998643 247888888 99999999999997642 35677888887764 5
Q ss_pred CceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 481 DISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
+..+|.+.+ ..+..+...+.|+.|.+. ....+..|+|++.++|
T Consensus 75 ~~~~g~v~l--~~~~~~~~~~~w~~L~~~--~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 75 DIVIGKVAL--SKLDLGQGKDEWFPLTPV--DPDSEVQGSVRLRARY 117 (117)
T ss_pred eeEEEEEEe--cCcCCCCcceeEEECccC--CCCCCcCceEEEEEEC
Confidence 556666554 555445567899999653 1234678999999986
No 66
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.47 E-value=2.6e-13 Score=122.91 Aligned_cols=98 Identities=27% Similarity=0.388 Sum_probs=83.0
Q ss_pred EEEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC----CcEEEEEEEecCC
Q 006016 403 ELSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR----KQKLYIQVKDSFG 478 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~----~q~L~I~V~D~d~ 478 (664)
.|+|+|++|++|+ .|.+||||+++++++. ++|++++++.||.|||+|.|.+..+. ...|.++|||++.
T Consensus 5 ~l~V~v~~a~~L~--~~~~dpyv~v~~~~~~------~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~ 76 (111)
T cd04011 5 QVRVRVIEARQLV--GGNIDPVVKVEVGGQK------KYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS 76 (111)
T ss_pred EEEEEEEEcccCC--CCCCCCEEEEEECCEe------eeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc
Confidence 5899999999998 6789999999999764 36999999999999999999986542 4689999999998
Q ss_pred C-CCceeEeEEeecCcccCCCc---cceEEEecC
Q 006016 479 F-ADISIGTGEVDLGSLKDTVP---TDRIVELRG 508 (664)
Q Consensus 479 ~-kDd~LG~~~IdL~~L~~~~~---~d~~~~L~~ 508 (664)
. +|++||.+.++|+++..+.. ...|++|.+
T Consensus 77 ~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 77 LRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 5 79999999999999976532 467888743
No 67
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.47 E-value=5.4e-13 Score=127.30 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=101.0
Q ss_pred ceeeEEEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCC
Q 006016 399 DFVGELSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFG 478 (664)
Q Consensus 399 ~~~GvL~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~ 478 (664)
+-.-.|.|.|.+|++|+. +.+|||.+.++++.+ .||+++.++.||.|+|.|+|..... ...+.|.||+.+.
T Consensus 8 R~~~sL~v~V~EAk~Lp~---~~~~Y~~i~Ld~~~v-----aRT~v~~~~~nP~W~E~F~f~~~~~-~~~l~v~v~k~~~ 78 (146)
T cd04013 8 RTENSLKLWIIEAKGLPP---KKRYYCELCLDKTLY-----ARTTSKLKTDTLFWGEHFEFSNLPP-VSVITVNLYRESD 78 (146)
T ss_pred EEEEEEEEEEEEccCCCC---cCCceEEEEECCEEE-----EEEEEEcCCCCCcceeeEEecCCCc-ccEEEEEEEEccC
Confidence 345679999999999985 458999999999764 4799999999999999999976554 5789999987653
Q ss_pred -C----CCceeEeEEeecCcccCCCccceEEEecCCcccC------CCceeeEEEEEEEEEecCC
Q 006016 479 -F----ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLF------KNGFTGELLLRLTYKAYVE 532 (664)
Q Consensus 479 -~----kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~------~~k~~G~I~L~L~y~P~~~ 532 (664)
. ++++||.+.|++.++..+...+.|++|.+..... ..+..++|+++++|.+...
T Consensus 79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~ 143 (146)
T cd04013 79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRV 143 (146)
T ss_pred ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeee
Confidence 2 6899999999999999887889999997642211 0245589999999998653
No 68
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.47 E-value=3.4e-13 Score=123.74 Aligned_cols=109 Identities=22% Similarity=0.203 Sum_probs=90.5
Q ss_pred CCCceeeEEEEEEEeceecccc---cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYI---YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLY 470 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~---~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~ 470 (664)
.+....+.|.|+|++|++|+.. .+.+||||++++..... ..++|++++++.||+|||+|.|.+... ....|.
T Consensus 8 ~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~---~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~ 84 (123)
T cd08390 8 QYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER---RSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLR 84 (123)
T ss_pred EECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC---CceEeeeEcCCCCCccceEEEEEcCHHHhcccEEE
Confidence 3445678999999999999876 56789999999854321 235799999999999999999998653 245799
Q ss_pred EEEEecCCC-CCceeEeEEeecCcccCCCccceEEEec
Q 006016 471 IQVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELR 507 (664)
Q Consensus 471 I~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~ 507 (664)
|+|||++.. ++++||++.++|+++......+.|++|+
T Consensus 85 i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 85 LSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred EEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 999999885 7899999999999998877778899874
No 69
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.46 E-value=1.4e-13 Score=171.78 Aligned_cols=120 Identities=23% Similarity=0.347 Sum_probs=105.1
Q ss_pred eeeEEEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC-CcEEEEEEEecCC
Q 006016 400 FVGELSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR-KQKLYIQVKDSFG 478 (664)
Q Consensus 400 ~~GvL~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~-~q~L~I~V~D~d~ 478 (664)
-.|.|.|+|++|.+|....|.+||||++.+++++. .||++++++.||+|||+|.|.+.++. +++|+++|||+|.
T Consensus 1978 ~~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~~~~-----~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQSMGNTNAFCKLTLGNGPP-----RQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNT 2052 (2102)
T ss_pred CCcceEEEEeeccccccccCCCCCeEEEEECCCCc-----ccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCc
Confidence 47999999999999994488999999999997643 37999999999999999999998864 4789999999999
Q ss_pred CCCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeE---EEEEEEEEe
Q 006016 479 FADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGE---LLLRLTYKA 529 (664)
Q Consensus 479 ~kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~---I~L~L~y~P 529 (664)
++++.+|.++++|.++..++..+.||+|.+ ++++.|+ |+++++|.+
T Consensus 2053 f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-----~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2053 FGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-----ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred cCCCCCceEEEEHHHHhcCceeeeeeecCc-----ccccCCCcceEEEEEEecC
Confidence 877799999999999998888899999964 2356787 999999975
No 70
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.46 E-value=2.9e-13 Score=125.45 Aligned_cols=108 Identities=20% Similarity=0.171 Sum_probs=89.4
Q ss_pred CCCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEE-Eec--CCCcEEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLL-VAN--PRKQKLY 470 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~-V~~--~~~q~L~ 470 (664)
.+....+.|.|+|++|++|+.. .|.+||||++.+..... ..++|+++++ .||+|||+|.|. +.. .....|.
T Consensus 10 ~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~---~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~ 85 (124)
T cd08389 10 EYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK---QRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALR 85 (124)
T ss_pred EECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc---ceeecccccC-CCCcccCEEEECCCCHHHhccCEEE
Confidence 4455678899999999999988 67889999988755432 2357999888 999999999998 543 2367899
Q ss_pred EEEEecCCC-CCceeEeEEeecCcccCCCccceEEEec
Q 006016 471 IQVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELR 507 (664)
Q Consensus 471 I~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~ 507 (664)
++|||++.. ++++||.+.++|+++..+.....|++|+
T Consensus 86 ~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 86 FRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred EEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 999999986 7999999999999998777788899884
No 71
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.45 E-value=1.1e-12 Score=124.03 Aligned_cols=119 Identities=22% Similarity=0.327 Sum_probs=94.0
Q ss_pred EEEEEEEeceecccc-cCCCCcEEEEEecccccc-------ceeeeeeEEeCCCCCccc-cceEEEEEecCCCcEEEEEE
Q 006016 403 ELSVTLVDARKLFYI-YGKPDPYVVLSLGDQIIR-------SKKNSQTTVFGPPGEPIW-NQDFHLLVANPRKQKLYIQV 473 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~~-------sk~~~kT~Vik~tlnPvW-nEtf~f~V~~~~~q~L~I~V 473 (664)
+..|++++|++|+.. .|++||||++++...... ....++|+++++++||+| ||+|.|.+.. .+.|.++|
T Consensus 2 ~~~~~~~~A~~L~~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~--~~~L~v~V 79 (137)
T cd08691 2 SFSLSGLQARNLKKGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP--TDVLEIEV 79 (137)
T ss_pred EEEEEEEEeCCCCCccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC--CCEEEEEE
Confidence 467899999999854 899999999999643211 012468999999999999 9999999853 57999999
Q ss_pred EecCCC----CCceeEeEEeecCcccCCC---ccceEEEecCCcccCCCceeeEEEEEE
Q 006016 474 KDSFGF----ADISIGTGEVDLGSLKDTV---PTDRIVELRGGWGLFKNGFTGELLLRL 525 (664)
Q Consensus 474 ~D~d~~----kDd~LG~~~IdL~~L~~~~---~~d~~~~L~~~~~~~~~k~~G~I~L~L 525 (664)
||++.. .|++||++.+++.++.... ....|++|... ...+...|+|.+.+
T Consensus 80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~--~~~s~v~G~~~l~~ 136 (137)
T cd08691 80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR--TPTDHVSGQLTFRF 136 (137)
T ss_pred EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC--CCCCcEEEEEEEEe
Confidence 998653 2799999999999997652 24568888653 35667899998875
No 72
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.45 E-value=4.4e-13 Score=126.54 Aligned_cols=104 Identities=19% Similarity=0.252 Sum_probs=88.7
Q ss_pred EEEEEEeceecccc-cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC---------------CCc
Q 006016 404 LSVTLVDARKLFYI-YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP---------------RKQ 467 (664)
Q Consensus 404 L~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~---------------~~q 467 (664)
|.|+|++|++|+.. .|.+||||+++++... ....++|++++++.||.|||+|.|.+... ...
T Consensus 1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~--~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALKSNGTCDPFARVTLNYSS--KTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcccCCCCCcEEEEEEecCC--cCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccccc
Confidence 57999999999888 8899999999998421 11245899999999999999999998765 467
Q ss_pred EEEEEEEecCCC-CCceeEeEEeecCcccCCCccceEEEecCC
Q 006016 468 KLYIQVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELRGG 509 (664)
Q Consensus 468 ~L~I~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~ 509 (664)
.|.|+|||++.. ++++||++.++|.++......+.|+.|+..
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 899999999986 899999999999999877678899999653
No 73
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.44 E-value=5.7e-13 Score=127.99 Aligned_cols=99 Identities=26% Similarity=0.336 Sum_probs=82.0
Q ss_pred EEEEEEeceecccc--c--------------CCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC-CC
Q 006016 404 LSVTLVDARKLFYI--Y--------------GKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP-RK 466 (664)
Q Consensus 404 L~VtV~~Ar~L~~~--~--------------G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~-~~ 466 (664)
|.|+|++|++|+.+ . +.+||||++.++++.. +|++++++.||+|||+|.|.+..+ ..
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~------kT~v~~~t~nPvWNE~f~f~v~~p~~~ 75 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV------KTSVKKNSYNPEWNEQIVFPEMFPPLC 75 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEee------ecceEcCCCCCCcceEEEEEeeCCCcC
Confidence 78999999999986 2 3689999999987642 699999999999999999997543 25
Q ss_pred cEEEEEEEecCCC-CCceeEeEEeecCcccCCCc-------cceEEEecC
Q 006016 467 QKLYIQVKDSFGF-ADISIGTGEVDLGSLKDTVP-------TDRIVELRG 508 (664)
Q Consensus 467 q~L~I~V~D~d~~-kDd~LG~~~IdL~~L~~~~~-------~d~~~~L~~ 508 (664)
+.|.++|||+|.. +|++||++.++|.++..... ...|+.|.+
T Consensus 76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 7999999999986 99999999999999876532 235666654
No 74
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.44 E-value=9.9e-13 Score=120.83 Aligned_cols=97 Identities=24% Similarity=0.389 Sum_probs=74.6
Q ss_pred EEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecC------
Q 006016 404 LSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSF------ 477 (664)
Q Consensus 404 L~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d------ 477 (664)
|.|+|++|++|+ +.+||||++.+..... .....+|+++++|+||+|||+|+|.+.. .+.|.+.|||++
T Consensus 1 L~V~V~~A~~L~---~~sDPYV~l~v~~~~~-~~~~~KTk~i~~TlnPvWnE~F~i~l~~--s~~L~~~v~d~~~~~~~~ 74 (118)
T cd08686 1 LNVIVHSAQGFK---QSANLYCTLEVDSFGY-FVKKAKTRVCRDTTEPNWNEEFEIELEG--SQTLRILCYEKCYSKVKL 74 (118)
T ss_pred CEEEEEeCCCCC---CCCCCEEEEEEcCccc-cceeeeeeeecCCCCCccceEEEEEeCC--CCEEEEEEEEcccccccc
Confidence 689999999996 6789999999875421 1235789999999999999999999974 679999999983
Q ss_pred -C-CCCceeEeEEeecC--cccCCCccceEEEe
Q 006016 478 -G-FADISIGTGEVDLG--SLKDTVPTDRIVEL 506 (664)
Q Consensus 478 -~-~kDd~LG~~~IdL~--~L~~~~~~d~~~~L 506 (664)
. .+|+.+|.+.+.|+ .+...+.+...+.|
T Consensus 75 d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~ 107 (118)
T cd08686 75 DGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM 107 (118)
T ss_pred cccCcccEEEEEEEEECHHHhccCCeeEEEEEe
Confidence 3 38999977766654 45554444444444
No 75
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.43 E-value=1.7e-12 Score=120.43 Aligned_cols=115 Identities=26% Similarity=0.347 Sum_probs=90.6
Q ss_pred EEEEEEEeceecccc-cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-C
Q 006016 403 ELSVTLVDARKLFYI-YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-A 480 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-k 480 (664)
.|.|+|.+|+.+... .+.+||||.++++++. .++|++++++.||+|||+|.|.+.. .+.|.++|||++.. +
T Consensus 3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~-----~~kT~v~~~t~~P~Wne~f~~~~~~--~~~l~~~V~d~~~~~~ 75 (125)
T cd04021 3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQP-----PKKTEVSKKTSNPKWNEHFTVLVTP--QSTLEFKVWSHHTLKA 75 (125)
T ss_pred eEEEEEEeeECCCCCcCCCCCeEEEEEECCcc-----cEEeeeeCCCCCCccccEEEEEeCC--CCEEEEEEEeCCCCCC
Confidence 589999999844444 7889999999998652 3479999999999999999999864 57999999999986 8
Q ss_pred CceeEeEEeecCcccCCCc--c---ceEEEecCCcccCCCceeeEEEEEE
Q 006016 481 DISIGTGEVDLGSLKDTVP--T---DRIVELRGGWGLFKNGFTGELLLRL 525 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~~~~~--~---d~~~~L~~~~~~~~~k~~G~I~L~L 525 (664)
|++||++.++|.++..... . ..|+.+.... ..+.+..|+|++.+
T Consensus 76 ~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~ 124 (125)
T cd04021 76 DVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN-KGSSVKVGELTVIL 124 (125)
T ss_pred CcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC-CCcceeeeeEEEEe
Confidence 9999999999999876422 1 2477775431 11347789998875
No 76
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.43 E-value=8.6e-13 Score=122.23 Aligned_cols=90 Identities=30% Similarity=0.349 Sum_probs=79.2
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF- 479 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~- 479 (664)
+|+|+|++|++|+.. .|.+||||+++++++.. ..+|++++++.||+|||+|.|.+..+..+.|.++|||++..
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~----~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~ 76 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKI----NDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLG 76 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeec----cceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCC
Confidence 489999999999987 78999999999987653 24688889999999999999998776678999999999986
Q ss_pred CCceeEeEEeecCcccC
Q 006016 480 ADISIGTGEVDLGSLKD 496 (664)
Q Consensus 480 kDd~LG~~~IdL~~L~~ 496 (664)
+|++||++.++|++..-
T Consensus 77 ~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 77 SDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCceeEEEEEeeccccc
Confidence 89999999999998754
No 77
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.43 E-value=7.4e-13 Score=121.53 Aligned_cols=101 Identities=22% Similarity=0.231 Sum_probs=83.4
Q ss_pred EEeceecccc--cCCCCcEEEEEecccc-ccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCC----C-
Q 006016 408 LVDARKLFYI--YGKPDPYVVLSLGDQI-IRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFG----F- 479 (664)
Q Consensus 408 V~~Ar~L~~~--~G~sDPYV~vsl~~~~-~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~----~- 479 (664)
.++|++|+.. .|.+||||++++.+.. .+....++|+++++++||+|||+|.|.+.....+.|.++|||++. .
T Consensus 6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~~ 85 (120)
T cd04048 6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDLS 85 (120)
T ss_pred EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCCC
Confidence 3688999877 7899999999998764 223345789999999999999999998765457789999999985 4
Q ss_pred CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 480 ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 480 kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
+|++||++.++++++........++.|..
T Consensus 86 ~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 86 DHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred CCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 89999999999999987666667777733
No 78
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.42 E-value=2.8e-13 Score=126.31 Aligned_cols=108 Identities=20% Similarity=0.192 Sum_probs=86.4
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQ 472 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~ 472 (664)
+....|.|.|+|++|++|+.. .|.+||||++++.+.... ...++|+++++++||+|||+|.|.+... ....|.++
T Consensus 8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~ 86 (133)
T cd08384 8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGK-KSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEIT 86 (133)
T ss_pred EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCc-cCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEE
Confidence 344578999999999999987 788999999999753221 2346899999999999999999998653 35689999
Q ss_pred EEecCCC-CCceeEeEEeecCcccCCCccceEEEec
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELR 507 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~ 507 (664)
|||++.. +|++||.+.+++.. .+...+.|+.+.
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l 120 (133)
T cd08384 87 VWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCL 120 (133)
T ss_pred EEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHH
Confidence 9999875 88999999999986 233456677653
No 79
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.41 E-value=8.6e-13 Score=123.56 Aligned_cols=97 Identities=22% Similarity=0.274 Sum_probs=81.1
Q ss_pred eeeEEEEEEEeceecccc--cCCCCcEEEEEeccccc-cceeeeeeEEeCCCCCccccceEEEEEecC----CCcEEEEE
Q 006016 400 FVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQII-RSKKNSQTTVFGPPGEPIWNQDFHLLVANP----RKQKLYIQ 472 (664)
Q Consensus 400 ~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~-~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~----~~q~L~I~ 472 (664)
..+.|.|+|++|++|+.. .|.+||||++++.+... .....++|+++++++||+|||+|.|.+... ....|.++
T Consensus 14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~ 93 (133)
T cd04009 14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT 93 (133)
T ss_pred CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence 457899999999999987 68899999999874331 012346899999999999999999998753 25689999
Q ss_pred EEecCCC-CCceeEeEEeecCcccC
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKD 496 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~ 496 (664)
|||++.. +|++||++.++|+++..
T Consensus 94 V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 94 VKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred EEecCCCCCCcEeEEEEEeHHHCCc
Confidence 9999986 69999999999999875
No 80
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.41 E-value=1.2e-12 Score=121.69 Aligned_cols=105 Identities=24% Similarity=0.358 Sum_probs=88.4
Q ss_pred eEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC-CCcEEEEEEEecCC
Q 006016 402 GELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP-RKQKLYIQVKDSFG 478 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~-~~q~L~I~V~D~d~ 478 (664)
|.|.|+|++|++|+.. .+.+||||.+.+.+.... ...++|++++++.+|.|||+|.|.+... ..+.|.++|||++.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~-~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKN-ETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCC-CceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 8899999999999976 678999999998743211 2346899999999999999999998754 25789999999987
Q ss_pred C-CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 479 F-ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 479 ~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
. +|++||++.++|+++... ..+.|++|.+
T Consensus 92 ~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 92 TTRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred CCCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 5 889999999999999765 6788999865
No 81
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.2e-12 Score=142.84 Aligned_cols=135 Identities=24% Similarity=0.224 Sum_probs=110.5
Q ss_pred cCCCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec--CCCcEEE
Q 006016 395 DRNEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKLY 470 (664)
Q Consensus 395 ~~~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L~ 470 (664)
..+......|.|+|.+|++|+.. .|.+||||++++...+. ...+|++.++++||+|||+|.|.|.. .....|.
T Consensus 160 l~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~---~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~ 236 (421)
T KOG1028|consen 160 LQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKK---GKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLH 236 (421)
T ss_pred EEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCC---CcceeeeeecCcCCccccceEeecCHHHhccCEEE
Confidence 34556678899999999999988 67899999999987662 34589999999999999999999653 3478999
Q ss_pred EEEEecCCC-CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEecCCC
Q 006016 471 IQVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKAYVED 533 (664)
Q Consensus 471 I~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~~~ 533 (664)
++|||+|.+ +|++||.+.++|..+........|..+... ........|+|.+.++|.|....
T Consensus 237 l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~-~~~~~~~~gel~~sL~Y~p~~g~ 299 (421)
T KOG1028|consen 237 LSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPS-STDSEELAGELLLSLCYLPTAGR 299 (421)
T ss_pred EEEEecCCcccccEEEEEEecCccccccccceeeeccccc-cCCcccccceEEEEEEeecCCCe
Confidence 999999997 999999999999999887667889888542 11122223899999999998654
No 82
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.38 E-value=2e-12 Score=121.27 Aligned_cols=107 Identities=21% Similarity=0.256 Sum_probs=84.1
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec--CCCcEEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKLYIQ 472 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L~I~ 472 (664)
+....|.|.|+|++|++|+.. .|.+||||++++.....+ ...++|++++++.||+|||+|.|.+.. .....|.|+
T Consensus 10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~ 88 (136)
T cd08405 10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKR-VEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIIT 88 (136)
T ss_pred EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCc-cccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEE
Confidence 445678999999999999876 788999999998432111 123579999999999999999998763 235689999
Q ss_pred EEecCCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
|||++.. +|++||++.+++.+. +...+.|..+
T Consensus 89 v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~ 121 (136)
T cd08405 89 VMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDM 121 (136)
T ss_pred EEECCCCCCCcEeEEEEECCccC--CchHHHHHHH
Confidence 9999986 889999999999886 3334556554
No 83
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.37 E-value=9.7e-12 Score=114.47 Aligned_cols=120 Identities=23% Similarity=0.256 Sum_probs=92.9
Q ss_pred EEEEEEEeceecccc----cCCCCcEEEEEeccccccceeeeeeEEeCCCC-CccccceEEEEEecCCCcEEEEEEEecC
Q 006016 403 ELSVTLVDARKLFYI----YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPG-EPIWNQDFHLLVANPRKQKLYIQVKDSF 477 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~----~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tl-nPvWnEtf~f~V~~~~~q~L~I~V~D~d 477 (664)
.|+|+|++|++|+.. .+..||||++++.+........++|+++.++. ||+|||+|.|.+..+....|.++|||++
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 589999999999865 36789999999965432011245788888776 9999999999998765678999999998
Q ss_pred CCCCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 478 GFADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 478 ~~kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
..+|++||.+.++|+++..+ ..+++|.+.. ......|.|.+.++.
T Consensus 83 ~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~--~~~~~~~~l~v~~~~ 127 (128)
T cd00275 83 SGDDDFLGQACLPLDSLRQG---YRHVPLLDSK--GEPLELSTLFVHIDI 127 (128)
T ss_pred CCCCcEeEEEEEEhHHhcCc---eEEEEecCCC--CCCCcceeEEEEEEE
Confidence 77899999999999999653 4577775421 112456888888764
No 84
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.37 E-value=2.1e-12 Score=121.08 Aligned_cols=108 Identities=23% Similarity=0.282 Sum_probs=84.4
Q ss_pred CCCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYI 471 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I 471 (664)
.+....|.|.|+|++|++|+.. .|.+||||++++..... ....++|+++++++||.|||+|.|.+... ....|.+
T Consensus 9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~-~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~ 87 (136)
T cd08402 9 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGK-RLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIV 87 (136)
T ss_pred EEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCc-ccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEE
Confidence 4455679999999999999987 78899999999864221 11245799999999999999999998643 2347999
Q ss_pred EEEecCCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
+|||++.. +|++||.+.+++... +...+.|..+
T Consensus 88 ~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~ 121 (136)
T cd08402 88 TVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDM 121 (136)
T ss_pred EEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHH
Confidence 99999985 889999999999764 2234556554
No 85
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.37 E-value=2.2e-12 Score=121.95 Aligned_cols=110 Identities=21% Similarity=0.247 Sum_probs=86.3
Q ss_pred CCCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec--CCCcEEEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKLYI 471 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L~I 471 (664)
.+....|.|.|+|++|++|+.. .|.+||||++++.....+....+||++++++.||+|||+|.|.+.. .....|.+
T Consensus 9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~ 88 (138)
T cd08408 9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF 88 (138)
T ss_pred EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence 4555679999999999999987 7789999999996432211123589999999999999999999874 34678999
Q ss_pred EEEecCCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
+|||++.. ++++||++.+.+..... ...+.|..+
T Consensus 89 ~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~ 123 (138)
T cd08408 89 SVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEM 123 (138)
T ss_pred EEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHH
Confidence 99999975 89999999998875432 123556655
No 86
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.36 E-value=3.1e-12 Score=117.71 Aligned_cols=106 Identities=21% Similarity=0.243 Sum_probs=83.7
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec---CCCcEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN---PRKQKLYI 471 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~---~~~q~L~I 471 (664)
+....+.|+|+|++|++|+.. .+.+||||++.+.+... ....++|++++++.||+|||+|.|.... .....|.+
T Consensus 10 y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~-~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~ 88 (123)
T cd04035 10 YDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGAS-KATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRL 88 (123)
T ss_pred EeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCC-CCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEE
Confidence 344468899999999999877 68899999999853221 1234689999999999999999885322 22568999
Q ss_pred EEEecCCCCCceeEeEEeecCcccCCCccceE
Q 006016 472 QVKDSFGFADISIGTGEVDLGSLKDTVPTDRI 503 (664)
Q Consensus 472 ~V~D~d~~kDd~LG~~~IdL~~L~~~~~~d~~ 503 (664)
+|||++..++++||.+.++|+++..+...+.+
T Consensus 89 ~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~ 120 (123)
T cd04035 89 LVLDEDRFGNDFLGETRIPLKKLKPNQTKQFN 120 (123)
T ss_pred EEEEcCCcCCeeEEEEEEEcccCCCCcceEee
Confidence 99999877889999999999999876544443
No 87
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.35 E-value=1.8e-12 Score=121.69 Aligned_cols=106 Identities=21% Similarity=0.188 Sum_probs=84.2
Q ss_pred ceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEEEEE
Q 006016 399 DFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQVK 474 (664)
Q Consensus 399 ~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~V~ 474 (664)
...+.|.|+|++|++|+.. .|.+||||++++..... ....++|++++++.||.|||+|.|.+... ....|.|+||
T Consensus 12 ~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~-~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~ 90 (136)
T cd08404 12 PTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKK-RISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL 90 (136)
T ss_pred CCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCc-eeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence 3467899999999999987 78899999999854321 11245799999999999999999998642 2567999999
Q ss_pred ecCCC-CCceeEeEEeecCcccCCCccceEEEec
Q 006016 475 DSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELR 507 (664)
Q Consensus 475 D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~ 507 (664)
|++.. ++++||.+.+++.. .+.....|+.+.
T Consensus 91 d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 91 DSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred ECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 99986 89999999999998 233456676653
No 88
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.35 E-value=2.2e-12 Score=121.85 Aligned_cols=107 Identities=19% Similarity=0.197 Sum_probs=83.2
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec--CCCcEEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKLYIQ 472 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L~I~ 472 (664)
+....+.|.|+|++|++|+.. .|.+||||++++.....+ ....||+++++++||+|||+|.|.+.. .....|.|+
T Consensus 10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~-~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~ 88 (136)
T cd08406 10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRK-ISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVT 88 (136)
T ss_pred EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCcc-ccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEE
Confidence 444567899999999999987 788999999999653222 123579999999999999999999864 346789999
Q ss_pred EEecCCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
|||++.. ++++||++.+..... +...+.|..+
T Consensus 89 V~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~m 121 (136)
T cd08406 89 VAESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQM 121 (136)
T ss_pred EEeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHH
Confidence 9999975 899999999976542 3334445443
No 89
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.34 E-value=2.2e-12 Score=122.11 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=84.5
Q ss_pred CCCceeeEEEEEEEeceecccc----cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec--CCCcEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYI----YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKL 469 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~----~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L 469 (664)
.+....|.|.|+|++|++|+.. .+.+||||++++..+..+ ...+||+++++++||+|||+|.|.+.. .....|
T Consensus 9 ~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k-~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L 87 (138)
T cd08407 9 SYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAK-LKKKQTKRAKHKINPVWNEMIMFELPSELLAASSV 87 (138)
T ss_pred EEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcc-cceeccceeeCCCCCccccEEEEECCHHHhCccEE
Confidence 3445578899999999999876 245899999998865432 234689999999999999999999865 336779
Q ss_pred EEEEEecCCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 470 YIQVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 470 ~I~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
.++|||+|.+ ++++||.+.+.+.. .+...+.|..+
T Consensus 88 ~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 88 ELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred EEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 9999999986 89999999999875 23233445443
No 90
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.34 E-value=4.3e-13 Score=143.22 Aligned_cols=106 Identities=25% Similarity=0.370 Sum_probs=90.2
Q ss_pred eeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC-CcEEEEEEEecC
Q 006016 401 VGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR-KQKLYIQVKDSF 477 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~-~q~L~I~V~D~d 477 (664)
.-.|+|+|.+|+||.++ +|.+|||+++.+-.... ....++|++++.++||+|||+|.|.+...+ +..|.|+|||||
T Consensus 179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~-~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD 257 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPK-NESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD 257 (683)
T ss_pred CceEEEEehhhccccccCCCCCCCcceeEEeccCCc-chhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence 45789999999999999 99999999999875332 233468999999999999999999987643 678999999999
Q ss_pred CC-CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 478 GF-ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 478 ~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
+. ++|++|..++.+++|... +.++||+|..
T Consensus 258 rTsRNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 258 RTSRNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred ccccccccceecccHHHHhhc-chhhHHHHhh
Confidence 85 999999999999999875 6788988744
No 91
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.32 E-value=2.1e-12 Score=119.83 Aligned_cols=107 Identities=25% Similarity=0.246 Sum_probs=87.9
Q ss_pred ceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC--CcEEEEEEE
Q 006016 399 DFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR--KQKLYIQVK 474 (664)
Q Consensus 399 ~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~--~q~L~I~V~ 474 (664)
...|.|.|+|++|++|+.. .+.+||||++++.+... ....++|++++++.||.|||+|.|.+.... ...|.|+||
T Consensus 11 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~ 89 (134)
T cd00276 11 PTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGK-KLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV 89 (134)
T ss_pred CCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCe-EeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence 3458999999999999987 77899999999875431 112458999999999999999999987642 578999999
Q ss_pred ecCCC-CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 475 DSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 475 D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
|.+.. ++++||.+.+++++ .+...+.|+.|.+
T Consensus 90 d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 90 DKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred ecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 99984 89999999999999 4445678888754
No 92
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.32 E-value=2.8e-12 Score=120.01 Aligned_cols=107 Identities=26% Similarity=0.248 Sum_probs=82.5
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQ 472 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~ 472 (664)
+....|.|+|+|++|++|+.. .|.+||||++++.....+ ...++|++++++.||+|||+|.|.+... ....|.++
T Consensus 9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~ 87 (134)
T cd08403 9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRR-LKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIA 87 (134)
T ss_pred EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcc-cceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence 344578999999999999987 789999999998542211 1245799999999999999999988542 23569999
Q ss_pred EEecCCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
|||++.. +|++||.+.+++... +...+.|..+
T Consensus 88 v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 88 VVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred EEECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 9999985 799999999988732 2234455544
No 93
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.32 E-value=5.3e-12 Score=118.68 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=81.2
Q ss_pred CCCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec--CCCcEEEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKLYI 471 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L~I 471 (664)
.+....|.|.|+|++|++|+.. .|.+||||++++...... ...++|++++++.||+|||+|.|.+.. .....|.+
T Consensus 8 ~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~-~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~ 86 (135)
T cd08410 8 NYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKL-IKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVF 86 (135)
T ss_pred EECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcc-cceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEE
Confidence 3444568999999999999987 788999999997432111 123579999999999999999999854 22457999
Q ss_pred EEEecCCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
+|||++.. +|++||++.+....... ...+.|..+
T Consensus 87 ~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l 121 (135)
T cd08410 87 TVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRM 121 (135)
T ss_pred EEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHH
Confidence 99999975 89999998865433222 123556555
No 94
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.29 E-value=9.7e-12 Score=117.08 Aligned_cols=98 Identities=9% Similarity=0.049 Sum_probs=79.2
Q ss_pred CCCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCC-CccccceEEEEEecCC-CcEEEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPG-EPIWNQDFHLLVANPR-KQKLYI 471 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tl-nPvWnEtf~f~V~~~~-~q~L~I 471 (664)
.+....|.|+|+|++|++|++. .+..||||++++-....+- ..+||+++++|+ +|+|||+|.|.+.... +-.|.+
T Consensus 8 ~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~-~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v 86 (135)
T cd08692 8 CFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLL-YKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI 86 (135)
T ss_pred eecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcc-eeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence 4556679999999999999987 5667999999987544332 346899999996 6999999999997643 346888
Q ss_pred EEEecCCC-CCceeEeEEeecCcc
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSL 494 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L 494 (664)
+|||++.. ++++||++.+..+..
T Consensus 87 ~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 87 KLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEEeCCCCcCCceEEEEEECCccC
Confidence 99999875 899999999998764
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.28 E-value=1.7e-11 Score=110.52 Aligned_cols=89 Identities=22% Similarity=0.252 Sum_probs=72.8
Q ss_pred EEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC----CcEEEEEEEecCCC-C
Q 006016 408 LVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR----KQKLYIQVKDSFGF-A 480 (664)
Q Consensus 408 V~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~----~q~L~I~V~D~d~~-k 480 (664)
.++|++|+.. .|.+||||++++.+...+....++|+++++++||+|| +|.+.+.... .+.|.++|||++.. +
T Consensus 6 ~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~~ 84 (110)
T cd04047 6 QFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSGK 84 (110)
T ss_pred EEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCCC
Confidence 4589999887 7899999999987653223346799999999999999 6877764322 57999999999986 8
Q ss_pred CceeEeEEeecCcccCC
Q 006016 481 DISIGTGEVDLGSLKDT 497 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~~~ 497 (664)
|++||++.++++++...
T Consensus 85 d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 85 HDLIGEFETTLDELLKS 101 (110)
T ss_pred CcEEEEEEEEHHHHhcC
Confidence 99999999999999743
No 96
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.28 E-value=8.2e-12 Score=117.79 Aligned_cols=109 Identities=19% Similarity=0.182 Sum_probs=85.3
Q ss_pred CCceeeEEEEEEEeceecccc-cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec--CCCcEEEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI-YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKLYIQV 473 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L~I~V 473 (664)
+....+.|.|+|++|++|+.. .+.+||||++++...... ...++|++++++.||+|||+|.|.+.. .....|.++|
T Consensus 10 y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~-~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V 88 (137)
T cd08409 10 YNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKV-VKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV 88 (137)
T ss_pred ECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEE-eeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence 344568899999999999877 778999999998754221 123589999999999999999999863 3356899999
Q ss_pred EecCCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 474 KDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 474 ~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
||++.. ++++||++.+.......+...+.|..+
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~ 122 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDM 122 (137)
T ss_pred EeCCCCCCcceEEEEEECCcccCCChHHHHHHHH
Confidence 999974 899999999987655544445556554
No 97
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=3.9e-11 Score=132.64 Aligned_cols=121 Identities=22% Similarity=0.391 Sum_probs=102.2
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVK 474 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~ 474 (664)
.......+.++|+.|.+|..+ .|++|||++..+++.+. +|+++...+||+|||.|+|.+++. .+.+++.||
T Consensus 290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkr------rtrti~~~lnpvw~ekfhfechns-tdrikvrvw 362 (1283)
T KOG1011|consen 290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKR------RTRTIHQELNPVWNEKFHFECHNS-TDRIKVRVW 362 (1283)
T ss_pred ccccceeeEEeeeecccceecccCCCCCCcEEEeecccch------hhHhhhhccchhhhhheeeeecCC-CceeEEEEe
Confidence 345667899999999999988 89999999999987654 688999999999999999999997 889999999
Q ss_pred ecCC------------CCCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEE
Q 006016 475 DSFG------------FADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYK 528 (664)
Q Consensus 475 D~d~------------~kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~ 528 (664)
|.|. -.|||+|+..+.+..|.. ..+.||.|.+ ...+....|.|++.+...
T Consensus 363 ded~dlksklrqkl~resddflgqtvievrtlsg--emdvwynlek--rtdksavsgairlhisve 424 (1283)
T KOG1011|consen 363 DEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEK--RTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred cCcccHHHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhh--ccchhhccceEEEEEEEE
Confidence 9874 169999999999888765 4789999965 355667889888877654
No 98
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.18 E-value=6e-11 Score=100.02 Aligned_cols=82 Identities=34% Similarity=0.526 Sum_probs=71.9
Q ss_pred EEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-C
Q 006016 404 LSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-A 480 (664)
Q Consensus 404 L~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-k 480 (664)
|+|+|++|++|+.. .+..|||+++++++... ...+|++++++.+|.|+|+|.|.+.....+.|.|+|||++.. +
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~ 77 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGK 77 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee---eeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCC
Confidence 78999999999986 77889999999988653 245899999999999999999998877677799999999986 6
Q ss_pred CceeEeEE
Q 006016 481 DISIGTGE 488 (664)
Q Consensus 481 Dd~LG~~~ 488 (664)
|++||++.
T Consensus 78 ~~~iG~~~ 85 (85)
T PF00168_consen 78 DELIGEVK 85 (85)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEC
Confidence 99999873
No 99
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=99.14 E-value=3.3e-10 Score=99.81 Aligned_cols=87 Identities=25% Similarity=0.467 Sum_probs=76.6
Q ss_pred HHHHHHHHh-hhh-HHHHHHHHHHHHHHHhhcCCCCCcceEEEeEEeeCCCCceeeeEeeeecCCCCeEEEEEEEEEeCC
Q 006016 198 NMVLGKLWK-VYR-GGIENWIIGLLQPVIDDLKKPDYVERVEIKQFSLGDDPLSVRNVERRTSRRVNDLQYQIGLRYTGG 275 (664)
Q Consensus 198 N~~L~k~Wp-~~~-~~is~~I~~~le~iL~~~~~P~fi~sl~~~~ftLG~~pPrI~~Vr~~~~~~~~~l~lD~dv~~~g~ 275 (664)
|.+++|++- +++ +.+.+.+++.++..|++.++|+|++.|.+++++||++||.|+++++......+++.+|+|+.|.|+
T Consensus 1 N~ll~R~f~~~~~t~~~~~~i~~~L~~kL~~i~~P~fl~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~~~~dv~Y~G~ 80 (91)
T PF10296_consen 1 NALLGRLFFDFRRTEAFRDKIKEKLQKKLNKIKLPSFLDEISVTELDLGDSPPIISNVRIPDLDPDGELWIEFDVSYSGG 80 (91)
T ss_pred ChHHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCCccCcEEEEEEECCCCCCEEEeccccccCCCCCEEEEEEEEEcCC
Confidence 788888865 443 688999999999999988899999999999999999999999999875555566999999999999
Q ss_pred CcEEEEEEe
Q 006016 276 ARMLLMLSL 284 (664)
Q Consensus 276 ~~I~L~v~l 284 (664)
..+.+++++
T Consensus 81 ~~l~l~t~l 89 (91)
T PF10296_consen 81 FSLTLETKL 89 (91)
T ss_pred eEEEEEEEE
Confidence 999988775
No 100
>PLN02270 phospholipase D alpha
Probab=99.10 E-value=6.1e-10 Score=129.34 Aligned_cols=126 Identities=23% Similarity=0.346 Sum_probs=106.2
Q ss_pred eeeEEEEEEEeceecccc--------------------cCCCCcEEEEEeccccccceeeeeeEEeCCC-CCccccceEE
Q 006016 400 FVGELSVTLVDARKLFYI--------------------YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPP-GEPIWNQDFH 458 (664)
Q Consensus 400 ~~GvL~VtV~~Ar~L~~~--------------------~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~t-lnPvWnEtf~ 458 (664)
-.|.|.|+|.+|++|++. .+++|||+++.+++... .+|+++.+. .||+|+|+|+
T Consensus 6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v-----~rtr~~~~~~~~p~w~e~f~ 80 (808)
T PLN02270 6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARV-----GRTRKIENEPKNPRWYESFH 80 (808)
T ss_pred eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEE-----EEEeecCCCCCCCccccceE
Confidence 479999999999999751 35679999999998764 589999885 6999999999
Q ss_pred EEEecCCCcEEEEEEEecCCCCCceeEeEEeecCcccCCCccceEEEecCCcccCCCc--eeeEEEEEEEEEecCCCC
Q 006016 459 LLVANPRKQKLYIQVKDSFGFADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNG--FTGELLLRLTYKAYVEDE 534 (664)
Q Consensus 459 f~V~~~~~q~L~I~V~D~d~~kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k--~~G~I~L~L~y~P~~~~e 534 (664)
+.+... ...+.++|.|.|.+...+||.+.++..++..+...++|+++.+. .++. ..-+|+++++|+|+..++
T Consensus 81 i~~ah~-~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~---~~~p~~~~~~~~~~~~f~~~~~~~ 154 (808)
T PLN02270 81 IYCAHM-ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDN---DKNPIHGGSKIHVKLQYFEVTKDR 154 (808)
T ss_pred EeeccC-cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCC---CCCcCCCCCEEEEEEEEEEcccCc
Confidence 999887 68999999999988888999999999999998889999998653 1222 234899999999988753
No 101
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.01 E-value=2.3e-09 Score=91.18 Aligned_cols=97 Identities=33% Similarity=0.503 Sum_probs=80.4
Q ss_pred EEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-C
Q 006016 404 LSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-A 480 (664)
Q Consensus 404 L~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-k 480 (664)
|.|+|++|+++... .+..+|||.+.+.+. ...+|+++.++.||.|||.|.+.+.......+.++|||.+.. +
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~-----~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGK-----QKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEeccC-----ceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCC
Confidence 46899999999875 667899999999872 134788999999999999999999874478899999999876 6
Q ss_pred CceeEeEEeecCccc-CCCccceEEE
Q 006016 481 DISIGTGEVDLGSLK-DTVPTDRIVE 505 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~-~~~~~d~~~~ 505 (664)
+.++|.+.+++.++. .......|++
T Consensus 76 ~~~ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 76 DDFLGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred CceeEEEEEeHHHhhhcCCcCcceec
Confidence 899999999999998 4444556654
No 102
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.00 E-value=2.5e-09 Score=91.83 Aligned_cols=92 Identities=35% Similarity=0.472 Sum_probs=77.9
Q ss_pred EEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-C
Q 006016 404 LSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-A 480 (664)
Q Consensus 404 L~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-k 480 (664)
|.|+|++|++|... .+..+|||.+++.... ....+|+++.++.||.|||+|.|.+.....+.|.++|||.+.. .
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~ 78 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGR 78 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccC
Confidence 78999999999877 3578999999998652 1235799999999999999999999876578999999999875 6
Q ss_pred CceeEeEEeecCcccCCC
Q 006016 481 DISIGTGEVDLGSLKDTV 498 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~~~~ 498 (664)
+.++|.+.+++.++..+.
T Consensus 79 ~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 79 DDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred CceeEEEEEEHHHcccCc
Confidence 899999999999887653
No 103
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.99 E-value=9.7e-10 Score=129.61 Aligned_cols=123 Identities=28% Similarity=0.360 Sum_probs=101.7
Q ss_pred ceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEec
Q 006016 399 DFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDS 476 (664)
Q Consensus 399 ~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~ 476 (664)
...|-|+|.+.+|.+|+.. +|.+||||++.+.++. .++|+++++|+||+|||.+.+.|.+-..+.+.+.|+|+
T Consensus 1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~-----vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dw 1111 (1227)
T COG5038 1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKS-----VYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDW 1111 (1227)
T ss_pred cccCcEEEEEeccCCCcccccCCCCCceEEEEeccee-----cccccchhccCCCCccccceEeeeccccceEEEEEeec
Confidence 3578999999999999988 8889999999998875 35899999999999999999999876689999999999
Q ss_pred CCC-CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEe
Q 006016 477 FGF-ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKA 529 (664)
Q Consensus 477 d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P 529 (664)
|.. +++.||.+.++|..|..+.+.....+|.+.| -....|.++....+.+
T Consensus 1112 d~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~---~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1112 DSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT---FIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred ccCCCccccccccccHhhcCcCCccceeeeccCcc---eEecccEeecceecch
Confidence 985 9999999999999999887777666765432 1134556655555543
No 104
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.96 E-value=1.7e-09 Score=121.80 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=108.5
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCCC
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGFA 480 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~k 480 (664)
-|.|+|.+|++|+.. .|..||||.+.+..+.. .+|.++.+++.|-|.|+|+|.+... -..|.+-|||.|..+
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v-----~RT~tv~ksL~PF~gEe~~~~iP~~-F~~l~fYv~D~d~~~ 79 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEV-----CRTATVEKSLCPFFGEEFYFEIPRT-FRYLSFYVWDRDLKR 79 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecchhh-----hhhhhhhhhcCCccccceEEecCcc-eeeEEEEEecccccc
Confidence 489999999999988 89999999999998764 5799999999999999999999765 678999999999559
Q ss_pred CceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEecCCCCc
Q 006016 481 DISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKAYVEDEE 535 (664)
Q Consensus 481 Dd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~~~ee 535 (664)
|+.||.+.+.=++|......+.|+.|+. ...+...+|+|++++.+.+...+..
T Consensus 80 D~~IGKvai~re~l~~~~~~d~W~~L~~--VD~dsEVQG~v~l~l~~~e~~~~~~ 132 (800)
T KOG2059|consen 80 DDIIGKVAIKREDLHMYPGKDTWFSLQP--VDPDSEVQGKVHLELALTEAIQSSG 132 (800)
T ss_pred ccccceeeeeHHHHhhCCCCccceeccc--cCCChhhceeEEEEEEeccccCCCc
Confidence 9999999999999988777899999965 2345678999999999987766533
No 105
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.85 E-value=1.2e-08 Score=95.99 Aligned_cols=92 Identities=26% Similarity=0.219 Sum_probs=75.8
Q ss_pred EEEEEEeceecccc----cC--CCCcEEEEEeccccccceeeeeeEEeCCCCC--ccccceEEEEEecC-----------
Q 006016 404 LSVTLVDARKLFYI----YG--KPDPYVVLSLGDQIIRSKKNSQTTVFGPPGE--PIWNQDFHLLVANP----------- 464 (664)
Q Consensus 404 L~VtV~~Ar~L~~~----~G--~sDPYV~vsl~~~~~~sk~~~kT~Vik~tln--PvWnEtf~f~V~~~----------- 464 (664)
|+|.|.+|++++.. .| .+||||++.+.+.. ...++|.|..+++| |.||+.|.|.+..+
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~---~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~ 78 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLE---EDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKK 78 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCc---ccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEee
Confidence 89999999996542 55 49999999998752 13458999999999 99999999877652
Q ss_pred ------------CCcEEEEEEEecCCC-CCceeEeEEeecCcccCCC
Q 006016 465 ------------RKQKLYIQVKDSFGF-ADISIGTGEVDLGSLKDTV 498 (664)
Q Consensus 465 ------------~~q~L~I~V~D~d~~-kDd~LG~~~IdL~~L~~~~ 498 (664)
....|.++|||.|.+ +|++||.++++|..+....
T Consensus 79 ~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 79 EHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 246799999999986 8999999999999987653
No 106
>PLN02223 phosphoinositide phospholipase C
Probab=98.78 E-value=6.2e-08 Score=108.88 Aligned_cols=104 Identities=25% Similarity=0.257 Sum_probs=84.7
Q ss_pred eeEEEEEEEeceeccc----c---cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEE
Q 006016 401 VGELSVTLVDARKLFY----I---YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQV 473 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~----~---~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V 473 (664)
...|.|+|+.|.++.. . ....||||++.+.+...... .++|++..++.||+|||+|.|.+..++-..|+|+|
T Consensus 408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~-~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V 486 (537)
T PLN02223 408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEK-IMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEV 486 (537)
T ss_pred ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcc-eeEEEeCCCCcCceecceeEEEEEccCceEEEEEE
Confidence 4679999999998741 1 24569999999987654432 35688889999999999999999998778899999
Q ss_pred EecCCC-CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 474 KDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 474 ~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
+|+|.. +|+++|++.+++..|..+ -+.++|.+
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr~G---yR~VpL~~ 519 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELIEG---IRAVPLYD 519 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhcCC---ceeEeccC
Confidence 999975 899999999999999886 35566654
No 107
>PLN02952 phosphoinositide phospholipase C
Probab=98.72 E-value=1.1e-07 Score=108.86 Aligned_cols=119 Identities=19% Similarity=0.220 Sum_probs=91.1
Q ss_pred eeEEEEEEEeceecccc--------cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEE
Q 006016 401 VGELSVTLVDARKLFYI--------YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQ 472 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~~--------~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~ 472 (664)
...|.|+|+.|.+++.. ....||||++.+-+-.... ...+|+++.++.||+|||+|.|.+..++-..|.|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~-~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADN-AKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCC-cceeeeeccCCCCcccCCeeEEEEEcCCccEEEEE
Confidence 46899999999887421 1235999999987654332 23579999999999999999999998877789999
Q ss_pred EEecCCC-CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
|||+|.. .|+++|++.+++..|..+- ++++|.+. .+...+..++-++|
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~~----~G~~l~~a~Llv~f 596 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHDK----KGEKLKNVRLLMRF 596 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcCC----CCCCCCCEEEEEEE
Confidence 9999875 7999999999999998873 57788542 23444445555444
No 108
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=3.1e-08 Score=110.09 Aligned_cols=98 Identities=26% Similarity=0.265 Sum_probs=81.7
Q ss_pred cCCCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec--CCCcEEE
Q 006016 395 DRNEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKLY 470 (664)
Q Consensus 395 ~~~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L~ 470 (664)
+.+..+.|.|+|.|.+|++|+.. .+.+||||++++-... +....++|.+.++++||+|||+|.|.+.. ..+..|.
T Consensus 291 L~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~-~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~ 369 (421)
T KOG1028|consen 291 LCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGD-KRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLE 369 (421)
T ss_pred EEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCC-ceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEE
Confidence 34666789999999999999988 7888999999987655 33446789999999999999999998864 3355799
Q ss_pred EEEEecCCC-CCceeEeEEeecCc
Q 006016 471 IQVKDSFGF-ADISIGTGEVDLGS 493 (664)
Q Consensus 471 I~V~D~d~~-kDd~LG~~~IdL~~ 493 (664)
|+|||++.. ++++||.+.+-...
T Consensus 370 l~V~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 370 LTVWDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEEEEcccccccceeeEEEecCCC
Confidence 999999986 77799988887665
No 109
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.67 E-value=9.1e-08 Score=108.94 Aligned_cols=130 Identities=24% Similarity=0.285 Sum_probs=107.0
Q ss_pred eEEEEEEEeceecccc-cCCCCcEEEEEeccccccceeeeeeEEeCCCCCcccc-ceEEEEEecCCCcEEEEEEEecCCC
Q 006016 402 GELSVTLVDARKLFYI-YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWN-QDFHLLVANPRKQKLYIQVKDSFGF 479 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWn-Etf~f~V~~~~~q~L~I~V~D~d~~ 479 (664)
-.|.|.|+.|+.|+.. .|-..|+|.+.+-+..+.+.+.++|.|+.+++||+|| |+|+|.+.++.-..|++.|||.|.+
T Consensus 1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence 4678999999999977 6777899999999988888878888899999999999 9999999999889999999999997
Q ss_pred -CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEecCCCCcc
Q 006016 480 -ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKAYVEDEED 536 (664)
Q Consensus 480 -kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~~~ee~ 536 (664)
...|||++.+|+..+..+ -+.++|.++. ...-.-..|.+.+...|+.+.++.
T Consensus 1145 s~~~FiaqA~yPv~~ik~G---fRsVpLkN~y--SEdlELaSLLv~i~m~~~~~~~~~ 1197 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSG---FRSVPLKNGY--SEDLELASLLVFIEMRPVLESEEE 1197 (1267)
T ss_pred CCcceeeeeecchhhhhcc---ceeeecccCc--hhhhhhhhheeeeEeccccCcccc
Confidence 445999999999999875 3445665542 112345667788888888877665
No 110
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.63 E-value=8.5e-09 Score=116.04 Aligned_cols=130 Identities=19% Similarity=0.276 Sum_probs=102.3
Q ss_pred CCCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccc-------------------------cccceeeeeeEEeCCC
Q 006016 396 RNEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQ-------------------------IIRSKKNSQTTVFGPP 448 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~-------------------------~~~sk~~~kT~Vik~t 448 (664)
....|.-.|.|.+.+|++|.++ +|.+|||+...+-.. ....|-++-|+|+++|
T Consensus 108 ~~k~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T 187 (1103)
T KOG1328|consen 108 QNKPPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT 187 (1103)
T ss_pred CCCCCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc
Confidence 3444555677888999999888 899999999876311 0111235668899999
Q ss_pred CCccccceEEEEEecCCCcEEEEEEEecCCC-------------------------------------CCceeEeEEeec
Q 006016 449 GEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-------------------------------------ADISIGTGEVDL 491 (664)
Q Consensus 449 lnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-------------------------------------kDd~LG~~~IdL 491 (664)
+||+|+|.|.|.|.+...+.+++.+||+|.- .|||+|.+.++|
T Consensus 188 LnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl 267 (1103)
T KOG1328|consen 188 LNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPL 267 (1103)
T ss_pred CCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccch
Confidence 9999999999999998889999999998620 189999999999
Q ss_pred CcccCCCccceEEEecCCcccCCCceeeEEEEEEEEE
Q 006016 492 GSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYK 528 (664)
Q Consensus 492 ~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~ 528 (664)
.++... ..++|++|+. ...+++.+|.+++.+...
T Consensus 268 ~EiP~~-Gld~WFkLep--RS~~S~VqG~~~LklwLs 301 (1103)
T KOG1328|consen 268 AEIPPD-GLDQWFKLEP--RSDKSKVQGQVKLKLWLS 301 (1103)
T ss_pred hcCCcc-hHHHHhccCc--ccccccccceEEEEEEEe
Confidence 999765 4689999965 345678999999999554
No 111
>PLN02352 phospholipase D epsilon
Probab=98.51 E-value=6.3e-07 Score=104.40 Aligned_cols=121 Identities=19% Similarity=0.268 Sum_probs=94.6
Q ss_pred CceeeEEEEEEEeceecccc-------cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEE
Q 006016 398 EDFVGELSVTLVDARKLFYI-------YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLY 470 (664)
Q Consensus 398 ~~~~GvL~VtV~~Ar~L~~~-------~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~ 470 (664)
..-.|.|.++|.+|+-+... ....|||+++.+++... .+| .+..||+|+|+|++.+.......+.
T Consensus 6 ~~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v-----~rt---~~~~~p~w~e~f~i~~ah~~~~~~~ 77 (758)
T PLN02352 6 KFFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKV-----AKT---SHEYDRVWNQTFQILCAHPLDSTIT 77 (758)
T ss_pred cccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEE-----ecC---CCCCCCccccceeEEeeeecCCcEE
Confidence 34579999999999854322 11239999999998764 366 5566999999999999887446899
Q ss_pred EEEEecCCCCCceeEeEEeecCcccCCCc-cceEEEecCCcccCCCcee-eEEEEEEEEEecCCC
Q 006016 471 IQVKDSFGFADISIGTGEVDLGSLKDTVP-TDRIVELRGGWGLFKNGFT-GELLLRLTYKAYVED 533 (664)
Q Consensus 471 I~V~D~d~~kDd~LG~~~IdL~~L~~~~~-~d~~~~L~~~~~~~~~k~~-G~I~L~L~y~P~~~~ 533 (664)
++|.| .-.+||.+.++..++..+.. .++|+++.+.. ++... .+|+++++|+|+..+
T Consensus 78 f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~ 135 (758)
T PLN02352 78 ITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN---GKPNPELKLRFMLWFRPAELE 135 (758)
T ss_pred EEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC---CCCCCCCEEEEEEEEEEhhhC
Confidence 99988 46799999999999988755 89999986531 22223 499999999999876
No 112
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.51 E-value=1.1e-06 Score=100.43 Aligned_cols=104 Identities=18% Similarity=0.185 Sum_probs=82.7
Q ss_pred eeEEEEEEEeceecc----cc----cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEE
Q 006016 401 VGELSVTLVDARKLF----YI----YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQ 472 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~----~~----~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~ 472 (664)
...|.|+|+.|.++. .. ....||||++.+.+-.... ...+|+++.++.||+|||+|.|.+..++-..|+++
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~-~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~ 529 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDT-VMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLE 529 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCc-ceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEE
Confidence 457999999998743 11 2346999999997544322 23579999999999999999999998877899999
Q ss_pred EEecCCC-CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
|||+|.. .|+++|+..+++..|..+ -+.++|.+
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~G---yR~V~L~~ 563 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQG---IRAFPLHS 563 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCc---cceEEccC
Confidence 9999874 799999999999999886 33456644
No 113
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.51 E-value=8.4e-07 Score=101.56 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=83.5
Q ss_pred eeEEEEEEEeceecccc--------cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEE
Q 006016 401 VGELSVTLVDARKLFYI--------YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQ 472 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~~--------~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~ 472 (664)
..+|.|+|+.+.++... ....||||++.+-+..... ..++|++..++.||+|||+|.|.+..++-..|+|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~-~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDE-VMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCC-cccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 46799999999986411 2346999999987644322 23578999999999999999999998878899999
Q ss_pred EEecCCC-CCceeEeEEeecCcccCCCccceEEEecC
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
|+|+|.. +|+++|+..+++..|+.+ -+.++|.+
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~G---yR~V~L~~ 580 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQG---IHAVPLFN 580 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCc---cceEeccC
Confidence 9999984 899999999999999886 23456644
No 114
>PLN02228 Phosphoinositide phospholipase C
Probab=98.44 E-value=1.8e-06 Score=98.45 Aligned_cols=123 Identities=22% Similarity=0.254 Sum_probs=92.4
Q ss_pred eeEEEEEEEeceeccc---c-----cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccc-cceEEEEEecCCCcEEEE
Q 006016 401 VGELSVTLVDARKLFY---I-----YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIW-NQDFHLLVANPRKQKLYI 471 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~---~-----~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvW-nEtf~f~V~~~~~q~L~I 471 (664)
...|+|+|++|.+|+. . ....||||++.+.+-.... ..++|++++++.||+| ||+|.|.+..++-..|++
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~-~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf 508 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDT-VSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWF 508 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCC-CcceeeccCCCCCceECCCeEEEEEEcCceeEEEE
Confidence 3479999999998731 1 2236999999987654332 2458999999999999 999999999887789999
Q ss_pred EEEecCCC-CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEe
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKA 529 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P 529 (664)
+|+|+|.. .|+++|++.+++..|..+ -+.++|.+..+ ..-...+|.+++.+.+
T Consensus 509 ~V~D~d~~~~d~figq~~lPv~~Lr~G---YR~VpL~~~~G--~~l~~atLfv~~~~~~ 562 (567)
T PLN02228 509 KVQDYDNDTQNDFAGQTCLPLPELKSG---VRAVRLHDRAG--KAYKNTRLLVSFALDP 562 (567)
T ss_pred EEEeCCCCCCCCEEEEEEcchhHhhCC---eeEEEccCCCC--CCCCCeEEEEEEEEcC
Confidence 99999864 899999999999999876 34556644211 1123457877777755
No 115
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.39 E-value=1.3e-06 Score=100.42 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=90.3
Q ss_pred EEEEEEEeceecccc------cCCCCcEEEEEeccccccceeeeeeE-EeCCCCCccccceEEEEEecCCCcEEEEEEEe
Q 006016 403 ELSVTLVDARKLFYI------YGKPDPYVVLSLGDQIIRSKKNSQTT-VFGPPGEPIWNQDFHLLVANPRKQKLYIQVKD 475 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~------~G~sDPYV~vsl~~~~~~sk~~~kT~-Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D 475 (664)
+|.|+|.++.++... ...+|||+.+.+-+-+.. ....+|+ |..++-||.|+|+|+|.+..++-.-|++.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D-~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPAD-CAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccc-hhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 699999999976654 245799999998765432 2345788 66788999999999999999988899999999
Q ss_pred cCCC-CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEE
Q 006016 476 SFGF-ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYK 528 (664)
Q Consensus 476 ~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~ 528 (664)
+|.. +|+|+|+..+|+..|..+- +-++|.+..+ ..-..-+|-+++.+.
T Consensus 696 ~d~~~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~~~G--~~~~~asLfv~i~~~ 744 (746)
T KOG0169|consen 696 YDYIGKDDFIGQTTLPVSELRQGY---RHVPLLSREG--EALSSASLFVRIAIV 744 (746)
T ss_pred cCCCCcccccceeeccHHHhhCce---eeeeecCCCC--ccccceeEEEEEEEe
Confidence 9985 7999999999999998862 3345544200 112345566666553
No 116
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.37 E-value=7.1e-07 Score=80.36 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=69.6
Q ss_pred EEEEEEeceecccc-----cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCC
Q 006016 404 LSVTLVDARKLFYI-----YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFG 478 (664)
Q Consensus 404 L~VtV~~Ar~L~~~-----~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~ 478 (664)
|.|+|+.|+++... .+.+|||+.+.+++... .+|++ +.||.|||+|.|.+.. ...+.+.|||+.+
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~k-----aRTr~---srnd~WnE~F~i~Vdk--~nEiel~VyDk~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVER-----ARTKP---SRNDRWNEDFEIPVEK--NNEEEVIVYDKGG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECCEEE-----EeccC---CCCCcccceEEEEecC--CcEEEEEEEeCCC
Confidence 57899999999754 56789999999998742 34554 4899999999999953 6899999999987
Q ss_pred CCCceeEeEEeecCcccCC
Q 006016 479 FADISIGTGEVDLGSLKDT 497 (664)
Q Consensus 479 ~kDd~LG~~~IdL~~L~~~ 497 (664)
...-.+|..-+.|+++.++
T Consensus 71 ~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 71 DQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CeecceeeehhhHHHHHHH
Confidence 7777899999999998664
No 117
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.11 E-value=4.7e-06 Score=92.35 Aligned_cols=115 Identities=23% Similarity=0.355 Sum_probs=91.5
Q ss_pred eEEEEEEEeceecccc---cCCCCcEEEEEeccccccceeeeeeEEeCCCCCcccc-ceEEEEEecC--CCcEEEEEEEe
Q 006016 402 GELSVTLVDARKLFYI---YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWN-QDFHLLVANP--RKQKLYIQVKD 475 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~---~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWn-Etf~f~V~~~--~~q~L~I~V~D 475 (664)
|.|.|+|+.|++|+.+ ....|.||.+.+++..+ ||.|..+++||.|| +.|.|.|.+. .+++|.|.+.|
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~------ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld 76 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTF------KTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLD 76 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecccce------ehhhhhhhcCCcccccceEEecChhhhccCCeeEEEec
Confidence 6789999999999987 55679999999998765 68999999999999 5688888764 37789999999
Q ss_pred cCCC-CCceeEeEEeecCcccCCC----------ccceEEEecCCcccCCCceeeEEEEEEE
Q 006016 476 SFGF-ADISIGTGEVDLGSLKDTV----------PTDRIVELRGGWGLFKNGFTGELLLRLT 526 (664)
Q Consensus 476 ~d~~-kDd~LG~~~IdL~~L~~~~----------~~d~~~~L~~~~~~~~~k~~G~I~L~L~ 526 (664)
+|.. .+|-||.+.++++.|.-.. ....|+++.+. -...+|+|.+-+.
T Consensus 77 ~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdt----ihgirgeinvivk 134 (1169)
T KOG1031|consen 77 HDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDT----IHGIRGEINVIVK 134 (1169)
T ss_pred ccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeeccee----cccccceeEEEEE
Confidence 9985 8899999999999885421 12467776542 2356788876654
No 118
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.09 E-value=6.3e-06 Score=93.68 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=88.0
Q ss_pred eceecccc-cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC---------------CCcEEEEEE
Q 006016 410 DARKLFYI-YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP---------------RKQKLYIQV 473 (664)
Q Consensus 410 ~Ar~L~~~-~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~---------------~~q~L~I~V 473 (664)
.++.+.+. ++.+|||+++...+... .+ ..+|++++.|.+|.|+|.++|.+... ....+++++
T Consensus 139 ~~r~~~P~~~~~~dp~~~v~~~g~~~-~~-~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l 216 (800)
T KOG2059|consen 139 KTRQGLPIINGQCDPFARVTLCGPSK-LK-EKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL 216 (800)
T ss_pred hhcccCceeCCCCCcceEEeecccch-hh-ccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence 34455555 78899999999775432 12 25799999999999999999988754 345688999
Q ss_pred EecC-CC-CCceeEeEEeecCcccCCCccceEEEecCCc---ccCCCceeeEEEEEEEEE
Q 006016 474 KDSF-GF-ADISIGTGEVDLGSLKDTVPTDRIVELRGGW---GLFKNGFTGELLLRLTYK 528 (664)
Q Consensus 474 ~D~d-~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~---~~~~~k~~G~I~L~L~y~ 528 (664)
|+.. .. +++|+|++.+++..+......+.|+.|+..- ....+..-|.+++.++|.
T Consensus 217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence 9954 43 7999999999999998766778999996431 111235678899999885
No 119
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=97.98 E-value=2.7e-06 Score=96.46 Aligned_cols=97 Identities=21% Similarity=0.322 Sum_probs=78.8
Q ss_pred eeeEEEEEEEeceecccc--cCCCCcEEEEEecccc-ccceeeeeeEEeCCCCCccccceEEEEEecC----CCcEEEEE
Q 006016 400 FVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQI-IRSKKNSQTTVFGPPGEPIWNQDFHLLVANP----RKQKLYIQ 472 (664)
Q Consensus 400 ~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~-~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~----~~q~L~I~ 472 (664)
..-.|.|.|..|+++.+. +|-+||||++.+.... +..-...+|+|++.|+||+++|+|+|.|... +..-+.++
T Consensus 945 n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 945 NAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEE
Confidence 344566777888888877 8999999999998642 2233466899999999999999999998743 25679999
Q ss_pred EEecCCC-CCceeEeEEeecCcccC
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKD 496 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~ 496 (664)
|+|+|-. .+||-|.+.+.|+++..
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eeccceecccccchHHHHhhCCCCC
Confidence 9999986 89999999999998754
No 120
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=97.66 E-value=2.8e-05 Score=91.30 Aligned_cols=88 Identities=27% Similarity=0.322 Sum_probs=78.2
Q ss_pred EEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-
Q 006016 403 ELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF- 479 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~- 479 (664)
..+|++++|-+|.+. +|+.|||+.+.++++... -++..+.+|+||++.+.|++.+.-+....|.++|||+|..
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~----d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~ 689 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTL----DRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA 689 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeeeccchhh----hhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence 457999999999988 899999999999987643 2577899999999999999999888788999999999986
Q ss_pred CCceeEeEEeecCcc
Q 006016 480 ADISIGTGEVDLGSL 494 (664)
Q Consensus 480 kDd~LG~~~IdL~~L 494 (664)
.|+.+|+..+||+.-
T Consensus 690 ~d~~iget~iDLEnR 704 (1105)
T KOG1326|consen 690 QDEKIGETTIDLENR 704 (1105)
T ss_pred ccchhhceehhhhhc
Confidence 799999999998863
No 121
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=97.59 E-value=0.00072 Score=76.85 Aligned_cols=228 Identities=14% Similarity=0.261 Sum_probs=147.6
Q ss_pred CchHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHhhcCCCCCcceEEEeEEeeCCCCceeeeEeeeec-------
Q 006016 192 ESVEWVNMVLGKLWKV------YRGGIENWIIGLLQPVIDDLKKPDYVERVEIKQFSLGDDPLSVRNVERRTS------- 258 (664)
Q Consensus 192 EsveWLN~~L~k~Wp~------~~~~is~~I~~~le~iL~~~~~P~fi~sl~~~~ftLG~~pPrI~~Vr~~~~------- 258 (664)
-+|-.+|.++.+++.- ...++.+.+...++.++........++.+.+.++-||.+-|.+++.+++.-
T Consensus 99 S~c~s~~~V~h~lfqE~k~a~~~r~w~~~Rl~~e~~~~~~~~~~g~LL~~~~i~elElg~~f~~~~sLtvH~i~~~s~~l 178 (1051)
T KOG3532|consen 99 SSCNSISLVLHMLFQEHKDTRALRRWVHKRLQMEMNDITTRSAAGRLLQEIRIRELELGTKFMTINSLRVHSVENLSEFL 178 (1051)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceehhhhccccccccceEEeecccHHHHH
Confidence 4556678888888754 233344444445555554434567799999999999999999999887741
Q ss_pred -------CC----------CCeEEEEEEEEEeCCCcEEEEEEeeccccCeeEEEEEEEEEEEEEEEEEEEecCCCCccCe
Q 006016 259 -------RR----------VNDLQYQIGLRYTGGARMLLMLSLKFGIIPIAVPVGVRDFDIDGELWVKLRLIPTEPWVGA 321 (664)
Q Consensus 259 -------~~----------~~~l~lD~dv~~~g~~~I~L~v~l~~g~~g~~lpV~V~~l~~~G~lRV~l~L~~~~P~v~~ 321 (664)
.+ ...+.+=.++.|.|+..-.+.+... .+..-.++|+-.+++|-+|+.+...+ ..+
T Consensus 179 ~~~q~sk~R~~~~~~~~~~i~~~~~~ldidy~G~fTtsid~~s~---~~kk~S~~iKl~~l~Gm~r~~~~r~p----y~h 251 (1051)
T KOG3532|consen 179 KYAQTSKHRFILSPVNVYCIQKIVFILDIDYSGGFTTSIDVSTI---IAKKASLSVKITKLTGMVRVILSRQP----YHH 251 (1051)
T ss_pred HhhhhhhhhcccCCcceecccccccccccccCCCcceecCCccc---cccCCceeEEEEEeccceeEEEEecc----cee
Confidence 01 1123455677888876544333221 12234678889999999999987655 478
Q ss_pred eeEEeecCceEEEEEe--EecccccccchhHHHHHHHHHHhhcccceeecccee--ecccCCccCCCCccccccccccCC
Q 006016 322 VSWAFVSLPKIKFELS--PFRLFNLMAIPVLSMFLKKLLTEDLPRLFVRPKKIV--LDFQKGKAVGPVANDLKSGEQDRN 397 (664)
Q Consensus 322 v~vsFle~P~idf~lk--~lg~~di~~iPgL~~~I~~~I~~~l~~~lV~P~~l~--i~l~~~~a~gP~~~dl~sg~~~~~ 397 (664)
++++|++.|.+.-+++ .+| +-| ---|.+.|+++|+.++.....||++-- .++.. .|..+.+-.....-.
T Consensus 252 w~~sf~G~P~~e~di~s~~qg--~qL-Q~~I~q~i~~~ir~~~~rKhT~pnyK~ry~pff~----~~~~~a~~~~~s~~~ 324 (1051)
T KOG3532|consen 252 WTFSFVGQPIFETDINSQIQG--HQL-QRLIPQIIKEAIRRSLQRKHTWPNYKIRYRPFFP----NPIFQASPPINSFTH 324 (1051)
T ss_pred eeeeeccCchhhhhhHHHHHH--HHH-HHHhHHHHHHHHHHHHHhhccCcchhhhcccccc----CcccccCcchhhhhh
Confidence 8999999998865554 222 111 112446788889999999999999721 12111 111111000001112
Q ss_pred CceeeEEEEEEEeceecccccCCCCcEEEEEecccc
Q 006016 398 EDFVGELSVTLVDARKLFYIYGKPDPYVVLSLGDQI 433 (664)
Q Consensus 398 ~~~~GvL~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~ 433 (664)
-...|.+.|++.++..|....++..-||.+++....
T Consensus 325 i~~~G~~~V~~lE~srL~~~~k~~e~Yct~T~e~~p 360 (1051)
T KOG3532|consen 325 IKMEGGIEVTVLECSRLKDKNKNYEVYCTVTIESRP 360 (1051)
T ss_pred eeccCceeEeehhhhhhhccCCccceeeeccccCCc
Confidence 346799999999999998777788999999987554
No 122
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.55 E-value=6.4e-05 Score=89.37 Aligned_cols=106 Identities=19% Similarity=0.233 Sum_probs=84.4
Q ss_pred eeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEE---EecCCCcEEEEEEE
Q 006016 400 FVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLL---VANPRKQKLYIQVK 474 (664)
Q Consensus 400 ~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~---V~~~~~q~L~I~V~ 474 (664)
..|+|.|-|..|++|.-. ...+||||++++.....+. .+.||+++++|.||.+||+..+. ........|.++||
T Consensus 1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~-sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVl 1600 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKT-SKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVL 1600 (1639)
T ss_pred cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHh-hhhhhccccccCCCchhhheeecCCchhhhhhheeeeeee
Confidence 378999999999999766 5568999999997544322 13489999999999999987654 22233578999999
Q ss_pred ecCCC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 475 DSFGF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 475 D~d~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
..++. .+.++|.+.++|.++.-.....+||.|
T Consensus 1601 s~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1601 SNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred cccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 99886 888999999999998765555689887
No 123
>PLN02964 phosphatidylserine decarboxylase
Probab=97.32 E-value=0.00029 Score=81.89 Aligned_cols=91 Identities=26% Similarity=0.405 Sum_probs=75.2
Q ss_pred CCCceeeEEEEEEEeceecccccCCCCcEEE-EEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEE
Q 006016 396 RNEDFVGELSVTLVDARKLFYIYGKPDPYVV-LSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVK 474 (664)
Q Consensus 396 ~~~~~~GvL~VtV~~Ar~L~~~~G~sDPYV~-vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~ 474 (664)
..++..|+..+++++|+ +. ..|||.. +++|.+.+ ||.+.++|+||+|||...|.+........++.||
T Consensus 48 ~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~g~~~f------~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 116 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE-MK----FKDKWLACVSFGEQTF------RTETSDSTDKPVWNSEKKLLLEKNGPHLARISVF 116 (644)
T ss_pred ecccccCeEEEEeehhh-hc----cCCcEEEEEEecceee------eeccccccCCcccchhhceEeccCCcceEEEEEE
Confidence 34567899999999998 22 3488766 55666655 6999999999999999999998776666799999
Q ss_pred ecCCC-CCceeEeEEeecCcccCC
Q 006016 475 DSFGF-ADISIGTGEVDLGSLKDT 497 (664)
Q Consensus 475 D~d~~-kDd~LG~~~IdL~~L~~~ 497 (664)
|++.+ +++++|.++++|.++...
T Consensus 117 ~~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 117 ETNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred ecCCCCHHHhhhheeecHhhccHH
Confidence 99996 899999999999888664
No 124
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.0013 Score=69.78 Aligned_cols=92 Identities=22% Similarity=0.216 Sum_probs=71.9
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecC--CCcEEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQ 472 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~ 472 (664)
+.....-|.|++.+|..|..+ +|.+|||+...+.... .-+..++|.+.+++++|++|+.|.+.+... ...++.|.
T Consensus 228 ~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv-~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~ls 306 (362)
T KOG1013|consen 228 YSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDV-GKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALS 306 (362)
T ss_pred cCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCc-chhhcccCcchhccCCccccccccccCCccchhcceEEEe
Confidence 344566788999999999887 8999999999887332 223456899999999999999999888653 36789999
Q ss_pred EEecCCC-CCceeEeEEe
Q 006016 473 VKDSFGF-ADISIGTGEV 489 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~I 489 (664)
|||++.. ..+++|-...
T Consensus 307 vgd~~~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 307 VGDYDIGKSNDSIGGSML 324 (362)
T ss_pred ecccCCCcCccCCCcccc
Confidence 9999875 7777775443
No 125
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.82 E-value=0.001 Score=72.15 Aligned_cols=125 Identities=22% Similarity=0.307 Sum_probs=92.7
Q ss_pred eeEEEEEEEeceecccccCC--CCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC-----------Cc
Q 006016 401 VGELSVTLVDARKLFYIYGK--PDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR-----------KQ 467 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~~~G~--sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~-----------~q 467 (664)
.-.|++.|+++.+++...|. .|-|+.+.+.-.. .+....+|.++++|.+|.++|.|.+.+.... ..
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~n-D~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEN-DSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccc-cccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 34577788888877654333 3678887764222 1223357999999999999999999987621 34
Q ss_pred EEEEEEEecCCC--CCceeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEEec
Q 006016 468 KLYIQVKDSFGF--ADISIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYKAY 530 (664)
Q Consensus 468 ~L~I~V~D~d~~--kDd~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~ 530 (664)
-++|++|++..+ +|.++|.+.+.|..|.........++|.++ .+...|.|.++++..-.
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG----RK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG----RKAVGGKLEVKVRIRQP 505 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc----ccccCCeeEEEEEEecc
Confidence 689999999885 899999999999999877677778888764 23466888888887533
No 126
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=96.76 E-value=0.0021 Score=60.14 Aligned_cols=100 Identities=18% Similarity=0.134 Sum_probs=72.7
Q ss_pred EEEEEEeceecccc---c------------CCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEe------
Q 006016 404 LSVTLVDARKLFYI---Y------------GKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVA------ 462 (664)
Q Consensus 404 L~VtV~~Ar~L~~~---~------------G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~------ 462 (664)
|.|.|++|.+|+.. . =..++|+++.+.--... +..+|+++.++--|.|+.+++|.+.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~--e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~ 78 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEK--ELRRTRTVARSFCPEFNHHVEFPCNLVVQRN 78 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCC--ceeeccchhhhcCCCccceEEEecccEEEcC
Confidence 46788899998743 0 11378999986532211 2347999999999999999999876
Q ss_pred --c-------CCCcEEEEEEEecCC-----------CCCceeEeEEeecCcccCC-CccceEEE
Q 006016 463 --N-------PRKQKLYIQVKDSFG-----------FADISIGTGEVDLGSLKDT-VPTDRIVE 505 (664)
Q Consensus 463 --~-------~~~q~L~I~V~D~d~-----------~kDd~LG~~~IdL~~L~~~-~~~d~~~~ 505 (664)
. .....+.++||+.+. .+|-.||.+.+|+.+|... ....+|++
T Consensus 79 ~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~p 142 (143)
T cd08683 79 SGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYP 142 (143)
T ss_pred CCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCcccccc
Confidence 1 125678999999753 1577999999999999764 33466765
No 127
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=96.68 E-value=0.003 Score=71.41 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=67.3
Q ss_pred Eeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec----CCCcEEEEEEEecCCC-CC
Q 006016 409 VDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN----PRKQKLYIQVKDSFGF-AD 481 (664)
Q Consensus 409 ~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~----~~~q~L~I~V~D~d~~-kD 481 (664)
.+|++|.++ .+++|||..++-..........++|++++++++|.|.+. .+...+ ..+..+.+.|||++.. ++
T Consensus 143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~ 221 (529)
T KOG1327|consen 143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKH 221 (529)
T ss_pred eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCc
Confidence 457888877 899999999875533333456789999999999999873 333322 2257889999999985 78
Q ss_pred ceeEeEEeecCcccC
Q 006016 482 ISIGTGEVDLGSLKD 496 (664)
Q Consensus 482 d~LG~~~IdL~~L~~ 496 (664)
+++|.+...+.++..
T Consensus 222 ~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 222 DLIGKFQTTLSELQE 236 (529)
T ss_pred CceeEecccHHHhcc
Confidence 999999999998864
No 128
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.0076 Score=68.44 Aligned_cols=104 Identities=24% Similarity=0.301 Sum_probs=81.5
Q ss_pred EEEEEEEeceecccc-cCCCCcEEEEEeccccc-cceeeeeeEEeCCCCCccccceEEEEEecC---CCcEEEEEEEecC
Q 006016 403 ELSVTLVDARKLFYI-YGKPDPYVVLSLGDQII-RSKKNSQTTVFGPPGEPIWNQDFHLLVANP---RKQKLYIQVKDSF 477 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~-~G~sDPYV~vsl~~~~~-~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~---~~q~L~I~V~D~d 477 (664)
.++|.|+.|.+|+-. .|.--||+.+.+-+... .-++...|+...++-.|.+||+|+|.+.+. +.-.|.+.|.|+=
T Consensus 1126 kvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYC 1205 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYC 1205 (1283)
T ss_pred eEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhhe
Confidence 355667788888877 78889999998754322 223456788888999999999999998753 3556888888775
Q ss_pred CC-CCceeEeEEeecCcccCCCccceEEEe
Q 006016 478 GF-ADISIGTGEVDLGSLKDTVPTDRIVEL 506 (664)
Q Consensus 478 ~~-kDd~LG~~~IdL~~L~~~~~~d~~~~L 506 (664)
-. .|..+|.+.+.|.++.+.+.-..|++|
T Consensus 1206 FAReDRvvGl~VlqL~~va~kGS~a~W~pL 1235 (1283)
T KOG1011|consen 1206 FAREDRVVGLAVLQLRSVADKGSCACWVPL 1235 (1283)
T ss_pred eecccceeeeeeeehhhHhhcCceeEeeec
Confidence 43 788999999999999888777889988
No 129
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.00071 Score=71.73 Aligned_cols=135 Identities=23% Similarity=0.201 Sum_probs=92.7
Q ss_pred CCceeeEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEE--EEecC-CCcEEEE
Q 006016 397 NEDFVGELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHL--LVANP-RKQKLYI 471 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f--~V~~~-~~q~L~I 471 (664)
+....-.+..||..|++|+.+ .+..|||+++.+..-..+.. ..+|++..+++||.|+|+... ...+. ....+++
T Consensus 88 y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~-slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk 166 (362)
T KOG1013|consen 88 YDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLN-SLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRK 166 (362)
T ss_pred hhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhh-hhhHHhhccCcCcceeccceecccccchhhhhhhhe
Confidence 334456789999999999998 88999999999875433321 246889999999999986543 33332 2456788
Q ss_pred EEEecCCC-CCceeEeEEeecCcccCCCcc--ceEEE--ecCCcccCC-CceeeEEEEEEEEEecCC
Q 006016 472 QVKDSFGF-ADISIGTGEVDLGSLKDTVPT--DRIVE--LRGGWGLFK-NGFTGELLLRLTYKAYVE 532 (664)
Q Consensus 472 ~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~--d~~~~--L~~~~~~~~-~k~~G~I~L~L~y~P~~~ 532 (664)
.|.|.+.+ ..+++|+..+.+..+...... ..|+. +..+..... ...+|+|.+++.|.....
T Consensus 167 ~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~ 233 (362)
T KOG1013|consen 167 VVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTP 233 (362)
T ss_pred eeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCC
Confidence 88898876 788999999999988765322 12221 110101111 257899999998865543
No 130
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.0057 Score=66.03 Aligned_cols=109 Identities=22% Similarity=0.243 Sum_probs=84.1
Q ss_pred CceeeEEEEEEEeceecccc---cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEE
Q 006016 398 EDFVGELSVTLVDARKLFYI---YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVK 474 (664)
Q Consensus 398 ~~~~GvL~VtV~~Ar~L~~~---~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~ 474 (664)
-+..|.|.|.|++|++|..+ ...++||+++++-....- .-..+|+...+|++|.+.+...|.-..+ ...|.++||
T Consensus 265 ~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c-~ak~ktk~A~kT~~plyqq~l~f~~sp~-~k~Lq~tv~ 342 (405)
T KOG2060|consen 265 MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFC-IAKKKTKSARKTLDPLYQQQLSFDQSPP-GKYLQGTVW 342 (405)
T ss_pred hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCce-ecccccccccccCchhhhhhhhhccCCC-ccEEEEEEe
Confidence 34679999999999999877 346799999997654321 2235789999999998877766655544 778999999
Q ss_pred ec-CCC-CCceeEeEEeecCcccCCC-ccceEEEecC
Q 006016 475 DS-FGF-ADISIGTGEVDLGSLKDTV-PTDRIVELRG 508 (664)
Q Consensus 475 D~-d~~-kDd~LG~~~IdL~~L~~~~-~~d~~~~L~~ 508 (664)
-. ... ++.|+|.+++-+++|.-.. ..-.||+|.+
T Consensus 343 gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 343 GDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred ccccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 64 333 7889999999999997764 6678999865
No 131
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=95.52 E-value=0.013 Score=51.53 Aligned_cols=87 Identities=15% Similarity=0.282 Sum_probs=61.8
Q ss_pred EEEEEeceecccc--c-CCCCcEEE--EEeccccccceeeeeeEEeCCCCCccccceEEEEEe--cCCCcEEEEEEEecC
Q 006016 405 SVTLVDARKLFYI--Y-GKPDPYVV--LSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVA--NPRKQKLYIQVKDSF 477 (664)
Q Consensus 405 ~VtV~~Ar~L~~~--~-G~sDPYV~--vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~--~~~~q~L~I~V~D~d 477 (664)
-||++.|++|.-. . ..+.-|++ +.+.+. . ..||++..+..||+++|+|.|.+. ....-.|.+.|+..
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kp-v----~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~- 75 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKP-V----HFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQTQ- 75 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCC-c----cccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeecc-
Confidence 3788889888654 2 22334555 333332 2 246889999999999999988765 34466788899883
Q ss_pred CCCCceeEeEEeecCcccCC
Q 006016 478 GFADISIGTGEVDLGSLKDT 497 (664)
Q Consensus 478 ~~kDd~LG~~~IdL~~L~~~ 497 (664)
..+...||.|.+.|+++-.+
T Consensus 76 ~~RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 76 TPRKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred CCccceeeEEEeecccCCHH
Confidence 33778999999999987553
No 132
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=95.15 E-value=0.0055 Score=72.74 Aligned_cols=100 Identities=17% Similarity=0.080 Sum_probs=74.6
Q ss_pred eEEEEEEEeceecccc--cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec---C------CCcEEE
Q 006016 402 GELSVTLVDARKLFYI--YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN---P------RKQKLY 470 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~---~------~~q~L~ 470 (664)
-.+++++.+|+.|... .+-+|||+.+.+-++.. .|.++.+|+||.|+++..|.-.+ . ....+.
T Consensus 206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~------~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v 279 (1105)
T KOG1326|consen 206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSK------ETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRV 279 (1105)
T ss_pred hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccc------eeEeecCcCCCCccceeeccceeecCccchhhcCCCeEE
Confidence 3477888999999877 77899999999887753 69999999999999987763211 0 134678
Q ss_pred EEEEecCC-CCCceeEeEEeecCcccCCCccceEEEecC
Q 006016 471 IQVKDSFG-FADISIGTGEVDLGSLKDTVPTDRIVELRG 508 (664)
Q Consensus 471 I~V~D~d~-~kDd~LG~~~IdL~~L~~~~~~d~~~~L~~ 508 (664)
+++||.+. ..++++|+......-... .+.-.|+++..
T Consensus 280 ~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~r 317 (1105)
T KOG1326|consen 280 FEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMR 317 (1105)
T ss_pred EEeehhhhhchHHhhcccccceEEEec-CCccceEEeec
Confidence 99999997 499999987765544333 34556777654
No 133
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=93.83 E-value=0.1 Score=55.32 Aligned_cols=113 Identities=23% Similarity=0.135 Sum_probs=74.8
Q ss_pred ceeeEEEEEEEeceecccc----cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEE
Q 006016 399 DFVGELSVTLVDARKLFYI----YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVK 474 (664)
Q Consensus 399 ~~~GvL~VtV~~Ar~L~~~----~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~ 474 (664)
...|+|.+++.++++|+-. .-+.+-||++....+.. .+|.+-.....=.|.|+|+..+.+ ...+.+-||
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~-----aRt~vrs~~~~f~w~e~F~~Dvv~--~~vl~~lvy 120 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHP-----ARTRVRSSGPGFAWAEDFKHDVVN--IEVLHYLVY 120 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeeecccCc-----cccccccCCCCccchhhceeeccc--ceeeeEEEe
Confidence 3579999999999999865 23458999999887653 256666666667899999998876 468889999
Q ss_pred ecCC-CCCc--eeEeEEeecCcccCCCccceEEEecCCcccCCCceeeEEEEEEEEE
Q 006016 475 DSFG-FADI--SIGTGEVDLGSLKDTVPTDRIVELRGGWGLFKNGFTGELLLRLTYK 528 (664)
Q Consensus 475 D~d~-~kDd--~LG~~~IdL~~L~~~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~ 528 (664)
.|+. .+++ .+| .+.+..+... ..+..+.|. -.++|++-+++.+.
T Consensus 121 SW~pq~RHKLC~~g--~l~~~~v~rq-spd~~~Al~-------lePrgq~~~r~~~~ 167 (442)
T KOG1452|consen 121 SWPPQRRHKLCHLG--LLEAFVVDRQ-SPDRVVALY-------LEPRGQPPLRLPLA 167 (442)
T ss_pred ecCchhhccccccc--hhhhhhhhhc-CCcceeeee-------cccCCCCceecccC
Confidence 9886 3444 444 3333333222 223333331 24677777777653
No 134
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=93.55 E-value=2.3 Score=39.88 Aligned_cols=124 Identities=16% Similarity=0.215 Sum_probs=76.9
Q ss_pred eEEEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeE-EeCCCCCccccceEEEEEec--------CCCcEEEEE
Q 006016 402 GELSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTT-VFGPPGEPIWNQDFHLLVAN--------PRKQKLYIQ 472 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~-Vik~tlnPvWnEtf~f~V~~--------~~~q~L~I~ 472 (664)
=.+.|+|++..+++. ....-|+....++.... ..+|. ....+..-.|||+|.+.+.- .....+.+.
T Consensus 7 f~~~l~i~~l~~~p~--~~~~v~v~wkr~~~~~~---~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 7 FQFDLTIHELENLPS--SNGKVFVKWKRGDKSKG---SGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred EEEEEEEEEeECcCC--CCCEEEEEEEECCCCcc---ceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 346788888887763 12233444444433210 11222 22345567999999887642 124568899
Q ss_pred EEecCCC-CCceeEeEEeecCcccCCC--ccceEEEecCCcccCCCceeeEEEEEEEEEecCCCCc
Q 006016 473 VKDSFGF-ADISIGTGEVDLGSLKDTV--PTDRIVELRGGWGLFKNGFTGELLLRLTYKAYVEDEE 535 (664)
Q Consensus 473 V~D~d~~-kDd~LG~~~IdL~~L~~~~--~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~~~ee 535 (664)
|+..... +...+|.+.+||.+..... .....+.|.. ..+....|++.+++.+..++.+
T Consensus 82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~-----~~~~~a~L~isi~~~~~~~~~~ 142 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK-----CKKSNATLSISISLSELREDPD 142 (143)
T ss_pred EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc-----CCCCCcEEEEEEEEEECccCCC
Confidence 9887442 3369999999999997743 3445555533 1356778999999988776543
No 135
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=92.51 E-value=1.1 Score=48.89 Aligned_cols=121 Identities=16% Similarity=0.147 Sum_probs=85.7
Q ss_pred EEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec-------CCCcEEEEEEEec
Q 006016 404 LSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN-------PRKQKLYIQVKDS 476 (664)
Q Consensus 404 L~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~-------~~~q~L~I~V~D~ 476 (664)
+.|+|++|++.+.. ....-.+..+++++.. .|..+..+..|.||...-+.++. ....+++++||..
T Consensus 2 ivl~i~egr~F~~~-~~~~~vv~a~~ng~~l------~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQR-PRHPIVVEAKFNGESL------ETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCC-CCccEEEEEEeCCcee------eecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 56889999998754 1234567777887765 47788889999999988887753 2367899999999
Q ss_pred CC--CCCceeEeEEeecCcc---cCC--CccceEEEecCCcccCCCceeeEEEEEEEEEecCC
Q 006016 477 FG--FADISIGTGEVDLGSL---KDT--VPTDRIVELRGGWGLFKNGFTGELLLRLTYKAYVE 532 (664)
Q Consensus 477 d~--~kDd~LG~~~IdL~~L---~~~--~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~~ 532 (664)
|. .+.+.+|.+.+||..+ ..+ .....|++|.+-.. ..++.+=+|.+.+....-..
T Consensus 75 ~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~-~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 75 DGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSS-KYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred cCCCCcceeccEEEEEccccccccccccccCCCeeEcccccc-ccccCCccEEEEEEEecccc
Confidence 83 4788999999999998 554 34568999855211 11233456666666554443
No 136
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=91.63 E-value=2.2 Score=41.49 Aligned_cols=124 Identities=18% Similarity=0.141 Sum_probs=85.1
Q ss_pred eEEEEEEEeceecccc-c---CCCCc--EEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCC----------
Q 006016 402 GELSVTLVDARKLFYI-Y---GKPDP--YVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPR---------- 465 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~-~---G~sDP--YV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~---------- 465 (664)
--|+++|..++-.... . +..+. ++.+.+++|.++ |+.+..+.+|.++|.|-|.+....
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~------S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~l 82 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFR------SKPVPCACEPDFNEEFLFELPRDSFGAGSTATTL 82 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEe------cCCcccccCCCCCCcEEEEecccccccccchhHh
Confidence 4588888888754433 2 34444 444556677764 667888999999999999886542
Q ss_pred ---CcEEEEEEEecCCC-CCceeEeEEeecCcccCCCcc--ceEEEecCCcccCCCceeeEEEEEEEEEecCC
Q 006016 466 ---KQKLYIQVKDSFGF-ADISIGTGEVDLGSLKDTVPT--DRIVELRGGWGLFKNGFTGELLLRLTYKAYVE 532 (664)
Q Consensus 466 ---~q~L~I~V~D~d~~-kDd~LG~~~IdL~~L~~~~~~--d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~~ 532 (664)
.+.+++.|.-.|.. ...++|...++-..+...+.. ...+.|.+. ....+-+.|-|.+++..+|...
T Consensus 83 ls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~-~~e~kv~~GiL~l~lELlP~~~ 154 (156)
T PF15627_consen 83 LSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV-GPESKVPVGILDLRLELLPNLN 154 (156)
T ss_pred hcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc-CCCCccceeEEEEEEEeecCCC
Confidence 45778888766653 447999999998888665443 444555442 1122458999999999998754
No 137
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.81 E-value=0.42 Score=56.78 Aligned_cols=92 Identities=24% Similarity=0.279 Sum_probs=66.6
Q ss_pred eeEEEEEEEeceecccccCCCCcEEEEEeccccccce-eeeeeEEe-CCCCCccccce-EEEE-EecCCCcEEEEEEEec
Q 006016 401 VGELSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSK-KNSQTTVF-GPPGEPIWNQD-FHLL-VANPRKQKLYIQVKDS 476 (664)
Q Consensus 401 ~GvL~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk-~~~kT~Vi-k~tlnPvWnEt-f~f~-V~~~~~q~L~I~V~D~ 476 (664)
.+.+.|+|++|.-|..+ +...||.+.+-+-+..+. +..+|+++ .++.||+|+|+ |.|. |--++-..|+|.||+.
T Consensus 702 A~t~sV~VISgqFLSdr--kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeE 779 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDR--KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEE 779 (1189)
T ss_pred EeeEEEEEEeeeecccc--ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeecc
Confidence 56789999999988755 334799998765433322 34566665 57889999975 4442 3334467899999998
Q ss_pred CCCCCceeEeEEeecCcccCC
Q 006016 477 FGFADISIGTGEVDLGSLKDT 497 (664)
Q Consensus 477 d~~kDd~LG~~~IdL~~L~~~ 497 (664)
++ .++|+-.+++..|..+
T Consensus 780 gg---K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 780 GG---KFIGQRILPVDGLNAG 797 (1189)
T ss_pred CC---ceeeeeccchhcccCc
Confidence 64 7999999999998775
No 138
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=90.77 E-value=1.1 Score=43.82 Aligned_cols=88 Identities=17% Similarity=0.265 Sum_probs=57.8
Q ss_pred eEEEEEEEeceecccccCCCCcEEEEEe--ccccccceeeeeeEEeCCCCCccccceEEEEEe--c-CCCcEEEEEEEec
Q 006016 402 GELSVTLVDARKLFYIYGKPDPYVVLSL--GDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVA--N-PRKQKLYIQVKDS 476 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~~G~sDPYV~vsl--~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~--~-~~~q~L~I~V~D~ 476 (664)
.-++|+|+++.++.-. ..+|-|+.+.+ +++... .. .+|+.+.. .++.|||...|.+. + +....|.|++|+.
T Consensus 8 ~~~~v~i~~~~~~~~~-~~~~l~V~v~l~~g~~~L~-~p-v~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN-DIDKIYVRTGIYHGGEPLC-DN-VNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC-CcCeEEEEEEEEECCEEcc-Ce-eEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 3588999999887643 23477777643 343321 11 12433333 68999999888764 3 3478999999997
Q ss_pred CCC-----CCceeEeEEeecCc
Q 006016 477 FGF-----ADISIGTGEVDLGS 493 (664)
Q Consensus 477 d~~-----kDd~LG~~~IdL~~ 493 (664)
... ....+|.+.+.|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 642 22469999888776
No 139
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=90.61 E-value=0.89 Score=43.74 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=58.2
Q ss_pred EEEEEEEeceecccc-cCCCCcEEEEEe--ccccccceeeeeeEEeCCCCCccccceEEEEEe--c-CCCcEEEEEEEec
Q 006016 403 ELSVTLVDARKLFYI-YGKPDPYVVLSL--GDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVA--N-PRKQKLYIQVKDS 476 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~-~G~sDPYV~vsl--~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~--~-~~~q~L~I~V~D~ 476 (664)
-++|++....+.... ....+-|+.+.+ +++.. . ....|.......++.|||...|.+. + +.+..|.+++|+.
T Consensus 9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l-~-~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPL-C-PPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CeEEEEEeeccccccCCCceeEEEEEEEEECCEEc-c-CceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 467777777766542 334456666543 34321 1 1223433333468999999888753 3 3478999999998
Q ss_pred CCC---CCceeEeEEeecCcc
Q 006016 477 FGF---ADISIGTGEVDLGSL 494 (664)
Q Consensus 477 d~~---kDd~LG~~~IdL~~L 494 (664)
+.. ++..||.+.++|-+-
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred ecCCCCcceEEEEEeEEeEcc
Confidence 753 467999999988874
No 140
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=89.83 E-value=1.3 Score=43.84 Aligned_cols=90 Identities=18% Similarity=0.213 Sum_probs=57.5
Q ss_pred eEEEEEEEeceecccccCCCCcEEEEE--eccccccceeeeeeEEeCCCCCccccceEEEEEe--c-CCCcEEEEEEEec
Q 006016 402 GELSVTLVDARKLFYIYGKPDPYVVLS--LGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVA--N-PRKQKLYIQVKDS 476 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~~G~sDPYV~vs--l~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~--~-~~~q~L~I~V~D~ 476 (664)
..++|+|+.+.++.......+-|+.+. .|++... . ..+|+.+..+..+.|||.+.|.+. + +....|.|++|+.
T Consensus 8 ~~f~i~i~~~~~~~~~~~~~~l~V~~~lyhG~~~L~-~-p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAERTMKVGVQAGLFHGGESLC-K-TVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCCCCceEEEEEEEEECCEEcc-C-ceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 358899999998874223345666653 3444331 1 123555554577999999888654 3 3478999999997
Q ss_pred CCC-----------------CCceeEeEEeecCc
Q 006016 477 FGF-----------------ADISIGTGEVDLGS 493 (664)
Q Consensus 477 d~~-----------------kDd~LG~~~IdL~~ 493 (664)
... ++..||.+.+.|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 531 13567777776655
No 141
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=88.10 E-value=0.95 Score=51.74 Aligned_cols=62 Identities=21% Similarity=0.211 Sum_probs=51.5
Q ss_pred eeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-----CCceeEeEEeecCcccCCC
Q 006016 437 KKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-----ADISIGTGEVDLGSLKDTV 498 (664)
Q Consensus 437 k~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-----kDd~LG~~~IdL~~L~~~~ 498 (664)
.+..+|.++.+.+||.|-+.|.+...-...|.++++++|.+.. .++++|+++..++.+....
T Consensus 40 ~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~ 106 (529)
T KOG1327|consen 40 EEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS 106 (529)
T ss_pred ccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence 3455899999999999999887776665689999999998752 6789999999999987653
No 142
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=87.35 E-value=8.4 Score=36.44 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=39.0
Q ss_pred eeEEeCCC-CCccccceEEEEEe--c-CCCcEEEEEEEecCCCCC-----ceeEeEEeecCcc
Q 006016 441 QTTVFGPP-GEPIWNQDFHLLVA--N-PRKQKLYIQVKDSFGFAD-----ISIGTGEVDLGSL 494 (664)
Q Consensus 441 kT~Vik~t-lnPvWnEtf~f~V~--~-~~~q~L~I~V~D~d~~kD-----d~LG~~~IdL~~L 494 (664)
.|....-+ .++.|||.+.|.+. + +.+..|.|+||+.+..++ ..||.+.++|-+-
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 45555555 79999999888864 3 457899999999876433 6899999988774
No 143
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=85.62 E-value=2.3 Score=41.47 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=49.1
Q ss_pred CCCcEEEEEe--ccccccceeeeeeEEeCCCCCccccceEEEEEe--c-CCCcEEEEEEEecCCC-CCceeEeEEeecCc
Q 006016 420 KPDPYVVLSL--GDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVA--N-PRKQKLYIQVKDSFGF-ADISIGTGEVDLGS 493 (664)
Q Consensus 420 ~sDPYV~vsl--~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~--~-~~~q~L~I~V~D~d~~-kDd~LG~~~IdL~~ 493 (664)
.+|-|+.+.+ +++.... ..+|+.+.-+..+.|||...|++. + +.+..|.|++||.+.. +...+|.+.++|-+
T Consensus 29 ~~~l~V~~~l~~~~~~L~~--pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTL--PVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCEEEEEEEEECCEeccC--cEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 4566666643 3332211 113555555667899999888775 3 3478999999998764 67789999998876
Q ss_pred c
Q 006016 494 L 494 (664)
Q Consensus 494 L 494 (664)
-
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 3
No 144
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=82.06 E-value=11 Score=37.62 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=42.0
Q ss_pred EEEEEEEeceecccccCC--CCcEEEE--EeccccccceeeeeeEEeCCCCCccccceEEEEEe--c-CCCcEEEEEEEe
Q 006016 403 ELSVTLVDARKLFYIYGK--PDPYVVL--SLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVA--N-PRKQKLYIQVKD 475 (664)
Q Consensus 403 vL~VtV~~Ar~L~~~~G~--sDPYV~v--sl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~--~-~~~q~L~I~V~D 475 (664)
-++|+|..+..+ ..... ..-||.+ +.+++... . .+|+...-+.++.|||...|.+. + +....|.|+||+
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~-~--~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLC-Q--RRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecc-c--ceeeccCCCCCccccccEECccccccCChhhEEEEEEEE
Confidence 467777777532 22122 2244444 23333221 1 14555666678999998887764 3 347899999999
Q ss_pred cC
Q 006016 476 SF 477 (664)
Q Consensus 476 ~d 477 (664)
..
T Consensus 87 ~~ 88 (178)
T cd08399 87 GK 88 (178)
T ss_pred Ee
Confidence 74
No 145
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=80.64 E-value=5.6 Score=39.03 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=59.7
Q ss_pred eEEEEEEEeceecccc--cCCCCcEEEEEe--ccccccceeeeeeEEeC----CCCCccccceEEEEEe--c-CCCcEEE
Q 006016 402 GELSVTLVDARKLFYI--YGKPDPYVVLSL--GDQIIRSKKNSQTTVFG----PPGEPIWNQDFHLLVA--N-PRKQKLY 470 (664)
Q Consensus 402 GvL~VtV~~Ar~L~~~--~G~sDPYV~vsl--~~~~~~sk~~~kT~Vik----~tlnPvWnEtf~f~V~--~-~~~q~L~ 470 (664)
..+.|+|..+.+++.. ....|-|+.+.+ +++... . ...|+... -...+.|||...|.+. + +.+..|.
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~-~-~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~ 85 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLC-S-PVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV 85 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECc-C-ceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence 4588999999998876 345677887744 444331 1 11233211 1235779999888764 2 3478999
Q ss_pred EEEEecCCC----------CCceeEeEEeecCcc
Q 006016 471 IQVKDSFGF----------ADISIGTGEVDLGSL 494 (664)
Q Consensus 471 I~V~D~d~~----------kDd~LG~~~IdL~~L 494 (664)
|++|+.... ++..||.+.++|-+-
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 999997643 346888888887763
No 146
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=74.47 E-value=12 Score=37.00 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=34.5
Q ss_pred eeeEEeCCCCCccccceEEEEEecC--CCcEEEEEEEecCCC--C--CceeEeEEeecCc
Q 006016 440 SQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQVKDSFGF--A--DISIGTGEVDLGS 493 (664)
Q Consensus 440 ~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~V~D~d~~--k--Dd~LG~~~IdL~~ 493 (664)
..|.+..++.+|.|+|++.+.+... ...+|.+++++.... + +..+|.+.++|-+
T Consensus 61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 4678888999999999999887643 367899999997542 2 3799999999988
No 147
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=71.65 E-value=23 Score=31.70 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=56.1
Q ss_pred CCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCCCCceeEeEEeecCcccCCCc
Q 006016 420 KPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGFADISIGTGEVDLGSLKDTVP 499 (664)
Q Consensus 420 ~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~kDd~LG~~~IdL~~L~~~~~ 499 (664)
-++-.+++.+.+.... +|.-. ...+..|++.|.+.+.. ...|.|.||-.|- ..+.|...+.|++...
T Consensus 8 ~~eV~avLklDn~~Vg-----qT~Wk-~~s~q~WDQ~Fti~LdR--sRELEI~VywrD~--RslCav~~lrLEd~~~--- 74 (98)
T cd08687 8 CSEVSAVLKLDNTVVG-----QTQWK-PKSNQAWDQSFTLELER--SRELEIAVYWRDW--RSLCAVKFLKLEDERH--- 74 (98)
T ss_pred ccceEEEEEEcCeEEe-----ecccc-ccccccccceeEEEeec--ccEEEEEEEEecc--hhhhhheeeEhhhhcc---
Confidence 3567788888876542 45432 33588999999999876 5789999987763 3355666667776322
Q ss_pred cceEEEecCCcccCCCceeeEEEEEEEE
Q 006016 500 TDRIVELRGGWGLFKNGFTGELLLRLTY 527 (664)
Q Consensus 500 ~d~~~~L~~~~~~~~~k~~G~I~L~L~y 527 (664)
....++ .++|.+...++|
T Consensus 75 -~~~~~l---------epqg~l~~ev~f 92 (98)
T cd08687 75 -EVQLDM---------EPQLCLVAELTF 92 (98)
T ss_pred -cceecc---------ccccEEEEEEEe
Confidence 222222 477888888877
No 148
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=71.62 E-value=31 Score=34.73 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=41.1
Q ss_pred eeeeEEeCCCCCccccceEEEEEecC--CCcEEEEEEEecCCC---CCceeEeEEeecCc
Q 006016 439 NSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQVKDSFGF---ADISIGTGEVDLGS 493 (664)
Q Consensus 439 ~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~V~D~d~~---kDd~LG~~~IdL~~ 493 (664)
.++|.|...+.+|.|+|++.+.+... ...+|.+++++.-.. ....+|.+-++|-+
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 45788999999999999999887643 467899988875431 22568888887743
No 149
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=69.67 E-value=20 Score=36.35 Aligned_cols=54 Identities=15% Similarity=0.237 Sum_probs=40.8
Q ss_pred eeeeEEeCCCCCccccceEEEEEec--CCCcEEEEEEEecCC--CCC---ceeEeEEeecC
Q 006016 439 NSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKLYIQVKDSFG--FAD---ISIGTGEVDLG 492 (664)
Q Consensus 439 ~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L~I~V~D~d~--~kD---d~LG~~~IdL~ 492 (664)
.++|.|...+.+|.|+|++.+.+.. ....+|.+++++... .+| ..+|.+-++|-
T Consensus 54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 4678888899999999999887754 347789999988643 233 46787777764
No 150
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=68.75 E-value=4.2 Score=38.11 Aligned_cols=29 Identities=14% Similarity=0.128 Sum_probs=13.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhcc
Q 006016 134 RNIAGLFVFFFFVGVAFDKLWTSRKRNSK 162 (664)
Q Consensus 134 r~~~gl~~~~f~v~~~~~~ly~~~r~~R~ 162 (664)
||++-+++.++|+++++.++++.+||+|+
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55554444444444444444444444443
No 151
>KOG2238 consensus Uncharacterized conserved protein TEX2, contains PH domain [General function prediction only]
Probab=67.10 E-value=2.2 Score=50.49 Aligned_cols=95 Identities=17% Similarity=0.332 Sum_probs=74.3
Q ss_pred CCchHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhhcCCCCCcceEEEeEEeeCCCCceeeeEeeeecCCCCeEEEEE
Q 006016 191 KESVEWVNMVLGKLWKVYRGG--IENWIIGLLQPVIDDLKKPDYVERVEIKQFSLGDDPLSVRNVERRTSRRVNDLQYQI 268 (664)
Q Consensus 191 ~EsveWLN~~L~k~Wp~~~~~--is~~I~~~le~iL~~~~~P~fi~sl~~~~ftLG~~pPrI~~Vr~~~~~~~~~l~lD~ 268 (664)
.|.+-|||.++.++.--+.+. ..+.+.+..+.++.....|++++.+--.+..-|..||.|++.++..-......-++.
T Consensus 333 d~~T~~ln~~~~rl~~~~k~~~~~~n~~~~r~q~~y~~~Rt~~~~eelv~~~vd~~nl~p~i~~~~~l~~~~~gv~~~~~ 412 (795)
T KOG2238|consen 333 DEGTLALNAVLGRLFLDLKQPTDLKNSSHERIQRIYSKMRTPSYIEELVCRKVDTGNLPPLITSTRVLPVEMSGVWAFEI 412 (795)
T ss_pred chhhhhhhhhcchhhhcccCCccccchHHHHHHHHHhccccchhhhhhhhhhhhhcCCccccccceeEEeeccccccCcc
Confidence 477889999999998544322 566677778888877778999999999999999999999998886544344456778
Q ss_pred EEEEeCCCcEEEEEEee
Q 006016 269 GLRYTGGARMLLMLSLK 285 (664)
Q Consensus 269 dv~~~g~~~I~L~v~l~ 285 (664)
|+.|.|+..+.+...+.
T Consensus 413 di~y~~d~~~~i~~~v~ 429 (795)
T KOG2238|consen 413 DIEYRGDLTIIIETRVD 429 (795)
T ss_pred ceeeccccccccccccc
Confidence 89999987776665543
No 152
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=64.00 E-value=24 Score=32.18 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=46.6
Q ss_pred eeEEeCCCCCccccceEEEEEecCC-------CcEEEEEEEecCCCCCceeEeEEeecCcccCCCc--cceEEEecCCcc
Q 006016 441 QTTVFGPPGEPIWNQDFHLLVANPR-------KQKLYIQVKDSFGFADISIGTGEVDLGSLKDTVP--TDRIVELRGGWG 511 (664)
Q Consensus 441 kT~Vik~tlnPvWnEtf~f~V~~~~-------~q~L~I~V~D~d~~kDd~LG~~~IdL~~L~~~~~--~d~~~~L~~~~~ 511 (664)
.|.++. +.+|.+|-+..+.|.... ...+.++++..-+.....+|.+.+++..+.+... ......|.+
T Consensus 14 ~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~~~i~~~~~l~g--- 89 (107)
T PF11618_consen 14 TTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNGERIHGSATLVG--- 89 (107)
T ss_dssp E---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S--EEEEEEE-B---
T ss_pred ccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCCceEEEEEEEec---
Confidence 455555 789999999888887532 5689999998776567899999999999976432 334445533
Q ss_pred cCCCceeeEEEEEEEEE
Q 006016 512 LFKNGFTGELLLRLTYK 528 (664)
Q Consensus 512 ~~~~k~~G~I~L~L~y~ 528 (664)
.++..-|.|.+.++..
T Consensus 90 -~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 90 -VSGEDFGTLEYWIRLR 105 (107)
T ss_dssp -SSS-TSEEEEEEEEEE
T ss_pred -cCCCeEEEEEEEEEec
Confidence 2334789888877754
No 153
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=61.84 E-value=12 Score=45.32 Aligned_cols=108 Identities=15% Similarity=0.111 Sum_probs=78.8
Q ss_pred CCCCcEEEEEeccccccceeeeeeEEeCCC-CCccccceEEEEEecCCCcEEEEEEEecCCCC-CceeEeEEeecCcccC
Q 006016 419 GKPDPYVVLSLGDQIIRSKKNSQTTVFGPP-GEPIWNQDFHLLVANPRKQKLYIQVKDSFGFA-DISIGTGEVDLGSLKD 496 (664)
Q Consensus 419 G~sDPYV~vsl~~~~~~sk~~~kT~Vik~t-lnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~k-Dd~LG~~~IdL~~L~~ 496 (664)
.+.++|+.+.+....++ +|..+.+. .+|.|.+.|++.+... ...+.+.+-+.+... ...+|.+.++...+..
T Consensus 136 ~~~e~Ylt~~l~~~~~~-----~t~~~~~f~e~s~~~f~~~~~~~h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 136 KTLENYLTVVLHKARYR-----RTHVIYEFLENSRWSFSFDIGFAHK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCS 209 (887)
T ss_pred hhccchheeeechhhhh-----chhhhhcccccchhhhhcccccccc-ccEEEEeecCCccccceeEEEEeccchhhhhc
Confidence 34699999999877654 56666666 7999999998888776 567888887777655 7899999999999988
Q ss_pred CCccceEEEecCCcccCCCceeeEEEEEEEEEecCCC
Q 006016 497 TVPTDRIVELRGGWGLFKNGFTGELLLRLTYKAYVED 533 (664)
Q Consensus 497 ~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~~~ 533 (664)
+...+.|+.+.+... ......-.+.+++.|.+...+
T Consensus 210 ~~~~~~~~~Il~~d~-~~~~~~~~~~~~~~~~~~~~~ 245 (887)
T KOG1329|consen 210 GHRIGGWFPILDNDG-KPHQKGSNESLRLGFTPMEKD 245 (887)
T ss_pred cccccceeeeeccCC-ccccCCcccceEEeeEeechh
Confidence 877788887643211 001122346777888887763
No 154
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=60.40 E-value=29 Score=30.90 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=43.6
Q ss_pred EEEEEEeceecccc-c-CCCCcEEEEEe--ccccccceeeeeeEEeCCCCCccccceEEEEEe--c-CCCcEEEEEEEec
Q 006016 404 LSVTLVDARKLFYI-Y-GKPDPYVVLSL--GDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVA--N-PRKQKLYIQVKDS 476 (664)
Q Consensus 404 L~VtV~~Ar~L~~~-~-G~sDPYV~vsl--~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~--~-~~~q~L~I~V~D~ 476 (664)
+.+++...++.... . ..++-|+.+.+ +++... .. ..|+.+.-...+.|||...|.+. + +.+..|.+++|+.
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~-~p-v~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLC-LP-VSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEV 90 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEcc-Cc-EEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEe
Confidence 44555555555433 2 22477777643 443332 11 13555555566999999888664 3 3478999999986
Q ss_pred CC
Q 006016 477 FG 478 (664)
Q Consensus 477 d~ 478 (664)
..
T Consensus 91 ~~ 92 (100)
T smart00142 91 KN 92 (100)
T ss_pred eC
Confidence 53
No 155
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=59.99 E-value=1.4e+02 Score=30.10 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=40.5
Q ss_pred eeeeEEeCCCCCccccceEEEEEec--CCCcEEEEEEEecCC---C-------CCceeEeEEeecCc
Q 006016 439 NSQTTVFGPPGEPIWNQDFHLLVAN--PRKQKLYIQVKDSFG---F-------ADISIGTGEVDLGS 493 (664)
Q Consensus 439 ~~kT~Vik~tlnPvWnEtf~f~V~~--~~~q~L~I~V~D~d~---~-------kDd~LG~~~IdL~~ 493 (664)
...|.|..++.+|.|.|++.+.+.. ....+|.++.|+..- . ....+|.+-++|-.
T Consensus 57 ~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 57 SAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred EEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 3568888899999999998887653 346789999998651 1 13467887777755
No 156
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=59.91 E-value=38 Score=33.19 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=52.5
Q ss_pred CCCcEEEEEeccccccceeeeeeEEe--CCCCCccccceEEEEEecCCCcEEEEEEEecCCCCCceeEeEEeecCcccC
Q 006016 420 KPDPYVVLSLGDQIIRSKKNSQTTVF--GPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGFADISIGTGEVDLGSLKD 496 (664)
Q Consensus 420 ~sDPYV~vsl~~~~~~sk~~~kT~Vi--k~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~kDd~LG~~~IdL~~L~~ 496 (664)
+..-|+++.++++... +|+.. .....=.+||.|.+.+... .+.|.++||......+..|+.+.+++-....
T Consensus 36 ~~~~~ikl~~N~k~V~-----~T~~~~l~~dF~v~f~~~f~v~i~~~-Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVS-----RTRSRPLWSDFRVHFNEIFNVQITRW-PESIKLEIYEKSGLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEE-----eeeeEecCCCeEEeccCEEEEEEecC-CCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence 3456888888886542 34333 2333345689999999875 6899999999988889999999999776543
No 157
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=49.68 E-value=1.4e+02 Score=29.82 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=40.9
Q ss_pred eeeeeEEeCCCCCccccceEEEEEecC--CCcEEEEEEEecCCC-------CCceeEeEEeecCc
Q 006016 438 KNSQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQVKDSFGF-------ADISIGTGEVDLGS 493 (664)
Q Consensus 438 ~~~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~V~D~d~~-------kDd~LG~~~IdL~~ 493 (664)
....|.|..++.+|.|+|++.+.+... ...+|.++.|+..-. ....+|.+-++|-+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 345788999999999999998877543 367899999985431 13467877777653
No 158
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=49.29 E-value=48 Score=32.63 Aligned_cols=53 Identities=11% Similarity=0.218 Sum_probs=38.9
Q ss_pred eeeEEeCCCCCccccceEEEEEecC--CCcEEEEEEEecCCC------CCceeEeEEeecCc
Q 006016 440 SQTTVFGPPGEPIWNQDFHLLVANP--RKQKLYIQVKDSFGF------ADISIGTGEVDLGS 493 (664)
Q Consensus 440 ~kT~Vik~tlnPvWnEtf~f~V~~~--~~q~L~I~V~D~d~~------kDd~LG~~~IdL~~ 493 (664)
++|.+..+ .+|.|+|++.+.+... ...+|.+++|+.... ....+|.+.++|-+
T Consensus 55 ~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 44444444 9999999999887532 367899999996532 35688988888775
No 159
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.56 E-value=9.3 Score=45.05 Aligned_cols=95 Identities=17% Similarity=0.038 Sum_probs=55.5
Q ss_pred CCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEecCCC-CCceeEeEEeecCcccC-CC
Q 006016 421 PDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDSFGF-ADISIGTGEVDLGSLKD-TV 498 (664)
Q Consensus 421 sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~d~~-kDd~LG~~~IdL~~L~~-~~ 498 (664)
.+||+.+.+.-.... .+.+.+.+..|.|+|+|...+.. ...+.|.|+..... .+.....+++-.+++.. ..
T Consensus 28 l~~y~~v~vk~~~~~-----~~~~~~~~~~~~~~~~F~~~v~~--~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~ 100 (694)
T KOG0694|consen 28 LQPYLAVELKVKQGA-----ENMTKVELRIPELRETFHVEVVA--GGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLAL 100 (694)
T ss_pred hhhhheeccceeecc-----cccCCCCCCCchhhhheeeeeec--CCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhh
Confidence 488888887643321 34457788999999999999776 46788888887532 33333333333333332 12
Q ss_pred ccceEEEecCCcccCCCceeeEEEEEEEEEecC
Q 006016 499 PTDRIVELRGGWGLFKNGFTGELLLRLTYKAYV 531 (664)
Q Consensus 499 ~~d~~~~L~~~~~~~~~k~~G~I~L~L~y~P~~ 531 (664)
..+.|..+ .+.|++...+.+.-..
T Consensus 101 ~~~~w~~~---------~~~g~~~~~~~~~~~~ 124 (694)
T KOG0694|consen 101 EQRLWVLI---------EELGTLLKPAALTGTL 124 (694)
T ss_pred hhhhcccc---------ccccceeeeecccCcC
Confidence 23345443 3446666655554433
No 160
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=42.22 E-value=12 Score=45.11 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=55.3
Q ss_pred CCceeeEEEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEecCCCcEEEEEEEec
Q 006016 397 NEDFVGELSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVANPRKQKLYIQVKDS 476 (664)
Q Consensus 397 ~~~~~GvL~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~~~~q~L~I~V~D~ 476 (664)
+...-|.+.+.+++|..++. ...-||+..+..-.+-. ...+|+++.+|..|.||+.+++.+.. .|.+++.++++
T Consensus 754 Spl~ygflh~~vhsat~lkq---s~~lY~Td~v~e~~~~~-s~~st~~iadT~~~~~npe~hv~~~~--sqS~r~~~~ek 827 (1112)
T KOG4269|consen 754 SPLLYGFLHVIVHSATGLKQ---SRNLYCTDEVDEFGYFV-SKASTRVIADTAEPQWNPEKHVPVIE--SQSSRLEKTEK 827 (1112)
T ss_pred Ccccccceeeeecccccccc---ccceeeehhhhhhcccc-ccccceeeecccCCCCChhcccchhh--ccccchhhhcc
Confidence 34567999999999999873 44678887665332221 12479999999999999999988765 46777888876
Q ss_pred C
Q 006016 477 F 477 (664)
Q Consensus 477 d 477 (664)
+
T Consensus 828 ~ 828 (1112)
T KOG4269|consen 828 S 828 (1112)
T ss_pred c
Confidence 4
No 161
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=37.05 E-value=2.5e+02 Score=31.05 Aligned_cols=108 Identities=10% Similarity=0.106 Sum_probs=68.0
Q ss_pred EEEEEEeceecccccCCCCcEEEEEeccccccceeeeeeEEeCCCCCc--cccceEEEEEecCCCcEEEEEEEecCCCCC
Q 006016 404 LSVTLVDARKLFYIYGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEP--IWNQDFHLLVANPRKQKLYIQVKDSFGFAD 481 (664)
Q Consensus 404 L~VtV~~Ar~L~~~~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnP--vWnEtf~f~V~~~~~q~L~I~V~D~d~~kD 481 (664)
|-|.|.+-.++. -...-|+.++.++.... |..+.-+..- .-.+...+.+..- +..|++.+|-..-.+.
T Consensus 60 LLVeI~EI~~i~---k~khiyIef~~Gr~d~T------T~~IpTsKK~RI~IqqRV~IkIRQc-DnTLkI~lfKKkLvkk 129 (508)
T PTZ00447 60 LLVKINEIFNIN---KYKHIYIIFSTDKYDFT------TDEIPTNKKNRIHIDQRVDIKIRQC-DETLRVDLFTTKLTKK 129 (508)
T ss_pred EEEEehhhhccc---cceeEEEEEEcCceEEE------ccccccCcCceEEEeeeeeeeeeec-CceEEEEEEeccccce
Confidence 556666655543 23467888888876653 3222222211 2234444455543 6789999988776688
Q ss_pred ceeEeEEeecCc-ccC-CCccceEEEecCCcccCCCceeeEEEEEEE
Q 006016 482 ISIGTGEVDLGS-LKD-TVPTDRIVELRGGWGLFKNGFTGELLLRLT 526 (664)
Q Consensus 482 d~LG~~~IdL~~-L~~-~~~~d~~~~L~~~~~~~~~k~~G~I~L~L~ 526 (664)
..||.+.++++. +.. .-+...|+.+.. .+...++|.+++.
T Consensus 130 ~hIgdI~InIn~dIIdk~FPKnkWy~c~k-----DGq~~cRIqLSFh 171 (508)
T PTZ00447 130 VHIGQIKIDINASVISKSFPKNEWFVCFK-----DGQEICKVQMSFY 171 (508)
T ss_pred eEEEEEEecccHHHHhccCCccceEEEec-----CCceeeeEEEEeh
Confidence 899999999885 333 346788998854 3466777777764
No 162
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=35.14 E-value=57 Score=31.09 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=12.0
Q ss_pred CCCchHHHHHHHHHHHhh
Q 006016 190 RKESVEWVNMVLGKLWKV 207 (664)
Q Consensus 190 ~~EsveWLN~~L~k~Wp~ 207 (664)
+.+.+.=+|.+|++.=-.
T Consensus 66 ~~~~~~~l~~LLKr~a~~ 83 (146)
T PF14316_consen 66 DAEWLAALNELLKRVALQ 83 (146)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 356666678888876543
No 163
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=34.55 E-value=17 Score=38.29 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=17.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh
Q 006016 134 RNIAGLFVFFFFVGVAFDKLWT 155 (664)
Q Consensus 134 r~~~gl~~~~f~v~~~~~~ly~ 155 (664)
-..||+|.|+|++++++...|-
T Consensus 197 ~~~~g~f~wl~i~~~l~~~~Y~ 218 (268)
T PF09451_consen 197 SGGWGFFTWLFIILFLFLAAYL 218 (268)
T ss_pred cccccHHHHHHHHHHHHHHHHh
Confidence 5678888888888887777776
No 164
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.82 E-value=48 Score=25.69 Aligned_cols=28 Identities=39% Similarity=0.876 Sum_probs=12.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhhhhcccc
Q 006016 134 RNIAGLFVFFFFVGVAFDKLWTSRKRNSKMR 164 (664)
Q Consensus 134 r~~~gl~~~~f~v~~~~~~ly~~~r~~R~~~ 164 (664)
+.++.++..++|++++ +|-+++++|..-
T Consensus 11 ~~~~~v~~~~~F~gi~---~w~~~~~~k~~~ 38 (49)
T PF05545_consen 11 RSIGTVLFFVFFIGIV---IWAYRPRNKKRF 38 (49)
T ss_pred HHHHHHHHHHHHHHHH---HHHHcccchhhH
Confidence 3344444444444444 444444443333
No 165
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=30.37 E-value=81 Score=24.40 Aligned_cols=27 Identities=7% Similarity=0.036 Sum_probs=13.9
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHh
Q 006016 129 SPPINRNIAGLFVFFFFVGVAFDKLWT 155 (664)
Q Consensus 129 ~p~~~r~~~gl~~~~f~v~~~~~~ly~ 155 (664)
||+-+.+++|....+-+.+-+....|+
T Consensus 1 mp~wlt~iFsvvIil~If~~iGl~IyQ 27 (49)
T PF11044_consen 1 MPTWLTTIFSVVIILGIFAWIGLSIYQ 27 (49)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777754333332223334565
No 166
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=27.50 E-value=74 Score=28.81 Aligned_cols=15 Identities=7% Similarity=0.058 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHh
Q 006016 141 VFFFFVGVAFDKLWT 155 (664)
Q Consensus 141 ~~~f~v~~~~~~ly~ 155 (664)
+|+++|++.+.-.|.
T Consensus 27 v~~liill~c~c~~~ 41 (102)
T PF11669_consen 27 VWVLIILLSCCCACR 41 (102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555444444444
No 167
>PF10268 Tmemb_161AB: Predicted transmembrane protein 161AB; InterPro: IPR019395 This entry represents a family of conserved eukaryotic proteins. Members are putative transmembrane proteins but otherwise the function is not known.
Probab=26.29 E-value=46 Score=38.32 Aligned_cols=42 Identities=14% Similarity=0.316 Sum_probs=33.5
Q ss_pred HHHHhhheeeeeeCCCCchhhhhhhhHHHHHHH----HHHHHHHHh
Q 006016 114 VDKLRTQLGVIHPMPSPPINRNIAGLFVFFFFV----GVAFDKLWT 155 (664)
Q Consensus 114 ~~~~~~~~~~i~~~~~p~~~r~~~gl~~~~f~v----~~~~~~ly~ 155 (664)
+.++.-.+|-|+++|.|.++|.++|++.||... ...+..+|.
T Consensus 435 ~~~~~~al~~Lr~VFT~~~~RGl~sFltWW~~~~~f~tSl~Gl~Yh 480 (486)
T PF10268_consen 435 VAQFTAALGSLRNVFTPLFFRGLFSFLTWWTAFCWFATSLFGLYYH 480 (486)
T ss_pred HHHHHHHHhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556889999999999999999999999996543 333456665
No 168
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=24.02 E-value=12 Score=43.82 Aligned_cols=59 Identities=29% Similarity=0.410 Sum_probs=43.5
Q ss_pred CceeeEEEEEEEeceecccc------cCCCCcEEEEEeccccccceeeeeeEEeCCCCCccccceEEEEEec
Q 006016 398 EDFVGELSVTLVDARKLFYI------YGKPDPYVVLSLGDQIIRSKKNSQTTVFGPPGEPIWNQDFHLLVAN 463 (664)
Q Consensus 398 ~~~~GvL~VtV~~Ar~L~~~------~G~sDPYV~vsl~~~~~~sk~~~kT~Vik~tlnPvWnEtf~f~V~~ 463 (664)
.+..|..-.+++.|.++... .-+.+|++..+++.+.++ |+...++.+|+|||. .+.+.+
T Consensus 276 dd~~gi~ll~lI~a~~~~~i~~~~~~~f~~~~~~itsf~~~~fr------t~~~~~~e~piyNe~-~~E~~~ 340 (975)
T KOG2419|consen 276 DDFTGIALLTLIGAEMKYDIVEDVAKLFKDKWLAITSFGEQTFR------TEISDDTEKPIYNED-EREDSD 340 (975)
T ss_pred chhhhhHHHHHhhhhcccchhhhhhhccCCCchheeecchhhhh------hhhhccccccccccc-cccccc
Confidence 34557766777788777543 245689999999998864 778889999999996 444443
Done!