Query 006018
Match_columns 664
No_of_seqs 595 out of 3662
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 17:10:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.6E-99 3E-104 899.4 53.8 608 1-623 1-723 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 8.6E-53 1.9E-57 474.6 22.6 437 162-614 161-652 (889)
3 PLN03194 putative disease resi 100.0 9.9E-37 2.1E-41 273.0 11.5 137 8-150 19-178 (187)
4 PF00931 NB-ARC: NB-ARC domain 100.0 4E-36 8.7E-41 307.1 7.9 253 164-418 1-283 (287)
5 PF01582 TIR: TIR domain; Int 99.8 1E-19 2.2E-24 164.1 3.5 103 18-120 1-109 (141)
6 smart00255 TIR Toll - interleu 99.7 1.6E-17 3.4E-22 150.2 8.7 105 15-120 1-107 (140)
7 KOG0617 Ras suppressor protein 99.6 1.7E-17 3.7E-22 145.1 -5.3 172 479-659 23-197 (264)
8 PF13676 TIR_2: TIR domain; PD 99.6 1.3E-15 2.9E-20 129.2 4.6 87 18-110 1-87 (102)
9 PLN00113 leucine-rich repeat r 99.6 5.8E-15 1.3E-19 176.3 9.7 160 488-654 139-303 (968)
10 PLN00113 leucine-rich repeat r 99.5 1.3E-14 2.8E-19 173.3 10.4 166 481-653 155-326 (968)
11 PLN03210 Resistant to P. syrin 99.5 2.5E-13 5.3E-18 163.0 14.4 187 478-664 693-942 (1153)
12 KOG0617 Ras suppressor protein 99.4 9.4E-15 2E-19 128.0 -5.1 144 476-622 42-190 (264)
13 KOG0444 Cytoskeletal regulator 99.3 1.2E-13 2.7E-18 143.2 -0.3 140 476-616 112-257 (1255)
14 KOG0444 Cytoskeletal regulator 99.3 8.7E-14 1.9E-18 144.3 -1.8 160 479-648 92-258 (1255)
15 PRK04841 transcriptional regul 99.3 2.6E-11 5.7E-16 144.1 17.5 277 157-454 12-334 (903)
16 KOG0472 Leucine-rich repeat pr 99.2 4.2E-13 9.1E-18 132.8 -5.0 173 464-648 134-310 (565)
17 PF01637 Arch_ATPase: Archaeal 99.2 1.3E-10 2.8E-15 114.7 11.6 181 161-345 1-233 (234)
18 KOG4194 Membrane glycoprotein 99.2 8.5E-12 1.8E-16 129.0 3.2 156 489-652 173-334 (873)
19 TIGR00635 ruvB Holliday juncti 99.2 1.5E-10 3.3E-15 119.1 12.5 250 159-434 4-289 (305)
20 KOG0472 Leucine-rich repeat pr 99.2 5.3E-13 1.2E-17 132.1 -6.3 167 477-655 124-295 (565)
21 PRK00080 ruvB Holliday junctio 99.2 3.3E-10 7.1E-15 117.5 13.6 252 157-434 23-310 (328)
22 PRK15370 E3 ubiquitin-protein 99.1 1.3E-10 2.8E-15 131.0 10.1 126 479-616 211-337 (754)
23 KOG4194 Membrane glycoprotein 99.1 8.6E-11 1.9E-15 121.8 5.5 136 511-653 174-311 (873)
24 PRK15387 E3 ubiquitin-protein 99.1 1.9E-10 4.2E-15 128.8 8.4 146 488-653 301-463 (788)
25 PRK15387 E3 ubiquitin-protein 99.1 7E-10 1.5E-14 124.4 11.6 30 511-543 283-312 (788)
26 PRK15370 E3 ubiquitin-protein 99.0 4.1E-10 8.9E-15 126.9 8.5 132 478-622 231-363 (754)
27 PRK00411 cdc6 cell division co 99.0 1E-08 2.2E-13 109.7 17.7 234 157-398 28-308 (394)
28 COG2256 MGS1 ATPase related to 99.0 1.6E-09 3.5E-14 108.6 10.5 172 157-342 22-208 (436)
29 KOG0618 Serine/threonine phosp 98.9 3.7E-11 8.1E-16 130.9 -4.9 171 464-646 284-487 (1081)
30 PF05729 NACHT: NACHT domain 98.9 1.3E-08 2.8E-13 94.5 12.4 133 183-315 1-163 (166)
31 COG3903 Predicted ATPase [Gene 98.9 3.7E-10 8E-15 114.0 0.8 266 181-453 13-315 (414)
32 PRK13342 recombination factor 98.9 3.9E-08 8.4E-13 105.2 15.1 177 157-347 10-197 (413)
33 PRK06893 DNA replication initi 98.8 4.2E-08 9.1E-13 96.0 13.7 150 182-346 39-203 (229)
34 KOG0532 Leucine-rich repeat (L 98.8 1.3E-10 2.8E-15 120.4 -4.3 141 476-621 107-250 (722)
35 COG2909 MalT ATP-dependent tra 98.8 3.5E-08 7.6E-13 107.9 14.0 278 157-455 17-341 (894)
36 TIGR02928 orc1/cdc6 family rep 98.8 1.2E-07 2.6E-12 100.4 17.4 234 157-397 13-299 (365)
37 KOG3678 SARM protein (with ste 98.8 1E-08 2.2E-13 103.3 8.4 135 13-155 610-762 (832)
38 TIGR03015 pepcterm_ATPase puta 98.8 1.5E-07 3.2E-12 95.1 16.8 167 182-350 43-242 (269)
39 cd00116 LRR_RI Leucine-rich re 98.8 1.8E-09 3.9E-14 112.1 2.7 154 489-649 108-292 (319)
40 COG3899 Predicted ATPase [Gene 98.8 1.2E-08 2.5E-13 117.5 8.4 287 161-453 2-387 (849)
41 PF14580 LRR_9: Leucine-rich r 98.8 1.9E-09 4.1E-14 99.3 1.0 124 511-642 20-147 (175)
42 PLN03150 hypothetical protein; 98.7 1.7E-08 3.6E-13 113.4 8.0 111 512-622 420-533 (623)
43 KOG0532 Leucine-rich repeat (L 98.7 4.1E-10 8.9E-15 116.7 -4.6 156 480-648 88-247 (722)
44 PF14580 LRR_9: Leucine-rich r 98.7 6.2E-09 1.3E-13 95.9 3.6 122 518-650 5-128 (175)
45 cd00116 LRR_RI Leucine-rich re 98.7 3E-09 6.5E-14 110.4 1.5 172 488-662 80-288 (319)
46 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.5E-07 5.5E-12 90.8 14.5 174 158-348 14-203 (226)
47 PLN03150 hypothetical protein; 98.7 3.4E-08 7.3E-13 111.0 7.1 108 534-648 419-528 (623)
48 KOG4237 Extracellular matrix p 98.7 1.1E-09 2.5E-14 108.7 -4.2 174 472-653 72-340 (498)
49 PF13173 AAA_14: AAA domain 98.6 1.8E-07 3.8E-12 82.7 10.0 122 182-307 2-127 (128)
50 PF05496 RuvB_N: Holliday junc 98.6 3E-07 6.6E-12 86.6 11.7 178 157-348 22-223 (233)
51 KOG1259 Nischarin, modulator o 98.6 4.8E-09 1E-13 100.5 -0.4 100 512-615 286-385 (490)
52 PRK14961 DNA polymerase III su 98.6 1.3E-06 2.9E-11 91.7 17.5 181 157-343 14-217 (363)
53 KOG0618 Serine/threonine phosp 98.6 2.1E-09 4.5E-14 117.6 -3.9 110 511-622 46-155 (1081)
54 PRK12402 replication factor C 98.6 5.4E-07 1.2E-11 94.3 14.1 182 157-344 13-224 (337)
55 TIGR01242 26Sp45 26S proteasom 98.6 5.8E-07 1.3E-11 94.7 13.4 176 157-340 120-328 (364)
56 PRK07471 DNA polymerase III su 98.6 2E-06 4.3E-11 89.6 17.0 185 154-347 15-239 (365)
57 PRK14949 DNA polymerase III su 98.6 8.5E-07 1.8E-11 99.5 14.5 182 157-344 14-218 (944)
58 PRK13341 recombination factor 98.5 9.2E-07 2E-11 99.6 14.5 172 157-342 26-213 (725)
59 PRK14960 DNA polymerase III su 98.5 1.3E-06 2.8E-11 95.2 15.0 180 157-343 13-216 (702)
60 PLN03025 replication factor C 98.5 9.9E-07 2.2E-11 91.1 13.7 178 157-342 11-196 (319)
61 COG4886 Leucine-rich repeat (L 98.5 4.7E-08 1E-12 104.7 4.0 164 478-653 127-295 (394)
62 PRK07003 DNA polymerase III su 98.5 5.1E-07 1.1E-11 99.2 11.9 183 157-345 14-220 (830)
63 cd00009 AAA The AAA+ (ATPases 98.5 6.6E-07 1.4E-11 80.9 10.8 118 162-282 1-130 (151)
64 KOG2028 ATPase related to the 98.5 2.8E-07 6E-12 91.0 8.6 150 157-314 136-293 (554)
65 PRK05564 DNA polymerase III su 98.5 1.5E-06 3.3E-11 89.5 14.7 171 159-344 4-188 (313)
66 KOG1259 Nischarin, modulator o 98.5 8.6E-09 1.9E-13 98.8 -1.9 125 488-617 283-412 (490)
67 PRK09112 DNA polymerase III su 98.5 3.2E-06 6.9E-11 87.6 16.6 187 153-347 18-241 (351)
68 KOG3207 Beta-tubulin folding c 98.5 1.8E-08 3.8E-13 101.8 -0.1 128 488-615 145-282 (505)
69 PRK12323 DNA polymerase III su 98.5 1.1E-06 2.3E-11 95.5 13.4 182 157-344 14-223 (700)
70 PRK00440 rfc replication facto 98.5 2.7E-06 5.8E-11 88.3 15.8 178 157-343 15-200 (319)
71 PRK08903 DnaA regulatory inact 98.5 1.2E-06 2.7E-11 85.8 12.5 174 157-350 16-203 (227)
72 PRK15386 type III secretion pr 98.5 3.1E-07 6.6E-12 94.9 8.0 112 488-617 51-169 (426)
73 TIGR02397 dnaX_nterm DNA polym 98.5 3.6E-06 7.7E-11 88.8 16.5 185 157-346 12-218 (355)
74 COG4886 Leucine-rich repeat (L 98.5 6.2E-08 1.4E-12 103.7 3.1 155 487-652 114-272 (394)
75 PRK14963 DNA polymerase III su 98.5 2.1E-06 4.5E-11 93.2 14.1 181 157-343 12-214 (504)
76 PRK14956 DNA polymerase III su 98.5 2.1E-06 4.5E-11 91.0 13.6 179 157-342 16-218 (484)
77 PRK14957 DNA polymerase III su 98.4 3.2E-06 6.8E-11 92.0 15.1 178 157-341 14-215 (546)
78 PRK04195 replication factor C 98.4 6.4E-07 1.4E-11 97.8 9.9 178 157-344 12-200 (482)
79 PRK03992 proteasome-activating 98.4 3.3E-06 7.2E-11 89.4 14.5 204 157-368 129-375 (389)
80 KOG3207 Beta-tubulin folding c 98.4 5.6E-08 1.2E-12 98.2 0.9 128 488-616 171-313 (505)
81 PRK08727 hypothetical protein; 98.4 7.9E-06 1.7E-10 80.2 16.0 169 158-343 18-201 (233)
82 PF00308 Bac_DnaA: Bacterial d 98.4 3.8E-06 8.2E-11 81.4 13.5 158 181-344 33-206 (219)
83 PRK07940 DNA polymerase III su 98.4 6.1E-06 1.3E-10 86.7 15.9 180 158-346 4-213 (394)
84 PRK08691 DNA polymerase III su 98.4 2.3E-06 4.9E-11 94.1 12.9 181 157-344 14-218 (709)
85 PRK14955 DNA polymerase III su 98.4 4.4E-06 9.5E-11 88.8 14.4 182 157-343 14-225 (397)
86 PRK15386 type III secretion pr 98.4 9.1E-07 2E-11 91.5 8.7 119 478-614 63-187 (426)
87 PRK07994 DNA polymerase III su 98.4 4E-06 8.7E-11 92.6 14.1 182 157-344 14-218 (647)
88 PRK09087 hypothetical protein; 98.4 1.1E-05 2.4E-10 78.4 15.8 138 182-345 44-194 (226)
89 PRK08084 DNA replication initi 98.4 8.7E-06 1.9E-10 80.0 15.1 169 159-344 22-207 (235)
90 PRK06645 DNA polymerase III su 98.4 5.8E-06 1.3E-10 89.4 14.9 181 157-343 19-226 (507)
91 PRK14962 DNA polymerase III su 98.4 4.7E-06 1E-10 89.7 14.2 185 157-348 12-221 (472)
92 PF13855 LRR_8: Leucine rich r 98.3 3.4E-07 7.4E-12 69.1 3.3 58 557-615 1-60 (61)
93 PRK05642 DNA replication initi 98.3 1.3E-05 2.9E-10 78.6 15.4 148 182-344 45-206 (234)
94 PRK14951 DNA polymerase III su 98.3 8.1E-06 1.8E-10 90.0 14.6 182 157-344 14-223 (618)
95 PRK14964 DNA polymerase III su 98.3 8.7E-06 1.9E-10 87.3 14.3 180 157-342 11-213 (491)
96 TIGR02639 ClpA ATP-dependent C 98.3 7.7E-06 1.7E-10 93.9 14.8 168 137-315 164-358 (731)
97 TIGR02881 spore_V_K stage V sp 98.3 1.2E-05 2.7E-10 80.5 14.4 154 160-316 7-192 (261)
98 PRK05896 DNA polymerase III su 98.3 7.6E-06 1.6E-10 89.1 13.5 178 157-341 14-215 (605)
99 TIGR03689 pup_AAA proteasome A 98.3 6.6E-06 1.4E-10 88.5 12.7 162 154-315 177-378 (512)
100 TIGR00678 holB DNA polymerase 98.3 1.7E-05 3.7E-10 75.3 14.0 156 170-342 3-187 (188)
101 PRK09111 DNA polymerase III su 98.3 1.3E-05 2.8E-10 88.6 14.9 183 157-344 22-231 (598)
102 KOG4658 Apoptotic ATPase [Sign 98.3 5.1E-07 1.1E-11 103.9 4.0 132 487-618 569-731 (889)
103 PRK14087 dnaA chromosomal repl 98.3 1.6E-05 3.5E-10 85.4 15.0 163 182-349 141-322 (450)
104 PRK07764 DNA polymerase III su 98.3 1.4E-05 2.9E-10 91.5 15.1 179 157-342 13-217 (824)
105 PRK06305 DNA polymerase III su 98.3 2.6E-05 5.6E-10 83.9 16.2 178 157-341 15-217 (451)
106 PRK14958 DNA polymerase III su 98.2 9.3E-06 2E-10 88.4 12.9 181 157-344 14-218 (509)
107 PTZ00112 origin recognition co 98.2 1.2E-05 2.5E-10 89.4 12.9 233 157-396 753-1030(1164)
108 PRK14969 DNA polymerase III su 98.2 1.5E-05 3.2E-10 87.5 13.9 179 157-341 14-215 (527)
109 PTZ00361 26 proteosome regulat 98.2 1.4E-05 3.1E-10 84.7 13.4 156 157-316 181-368 (438)
110 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.5E-11 66.2 3.7 58 534-592 2-60 (61)
111 KOG4237 Extracellular matrix p 98.2 7.9E-08 1.7E-12 95.9 -3.5 138 502-646 58-199 (498)
112 PRK06620 hypothetical protein; 98.2 1E-05 2.2E-10 78.1 10.5 133 183-343 45-186 (214)
113 PRK14954 DNA polymerase III su 98.2 2.6E-05 5.7E-10 86.3 14.8 179 157-341 14-223 (620)
114 PRK14950 DNA polymerase III su 98.2 2.4E-05 5.2E-10 87.3 14.7 184 157-345 14-220 (585)
115 PRK14970 DNA polymerase III su 98.2 1.9E-05 4.1E-10 83.5 13.2 175 157-342 15-205 (367)
116 PRK14088 dnaA chromosomal repl 98.2 4.4E-05 9.6E-10 82.0 16.0 160 182-344 130-303 (440)
117 TIGR03345 VI_ClpV1 type VI sec 98.2 2E-05 4.3E-10 91.2 14.2 194 137-339 169-389 (852)
118 PHA02544 44 clamp loader, smal 98.2 2.7E-05 5.9E-10 80.6 13.8 147 157-313 19-171 (316)
119 PRK14959 DNA polymerase III su 98.2 2.4E-05 5.2E-10 85.7 13.5 186 157-349 14-224 (624)
120 PRK08451 DNA polymerase III su 98.1 5.7E-05 1.2E-09 81.8 16.0 181 157-344 12-216 (535)
121 PTZ00454 26S protease regulato 98.1 4.8E-05 1E-09 80.2 15.0 158 154-315 140-329 (398)
122 PRK14952 DNA polymerase III su 98.1 5.8E-05 1.3E-09 83.0 15.8 178 157-341 11-214 (584)
123 PRK00149 dnaA chromosomal repl 98.1 6.7E-05 1.5E-09 81.4 16.1 157 181-344 147-320 (450)
124 KOG1859 Leucine-rich repeat pr 98.1 8.1E-08 1.8E-12 102.6 -6.3 127 512-648 166-292 (1096)
125 PTZ00202 tuzin; Provisional 98.1 4.4E-05 9.6E-10 78.7 13.2 157 153-314 257-433 (550)
126 KOG0989 Replication factor C, 98.1 2.3E-05 5.1E-10 76.4 10.5 175 157-339 34-223 (346)
127 CHL00095 clpC Clp protease ATP 98.1 4.7E-05 1E-09 88.5 14.9 152 158-313 178-352 (821)
128 CHL00176 ftsH cell division pr 98.1 0.00013 2.9E-09 81.3 17.7 175 157-338 181-386 (638)
129 TIGR00362 DnaA chromosomal rep 98.1 4.1E-05 9E-10 82.0 13.4 156 182-344 136-308 (405)
130 PRK14953 DNA polymerase III su 98.1 7.4E-05 1.6E-09 81.0 15.2 181 157-345 14-219 (486)
131 PRK07133 DNA polymerase III su 98.1 5.5E-05 1.2E-09 84.3 14.3 179 157-341 16-214 (725)
132 PF08937 DUF1863: MTH538 TIR-l 98.1 7.1E-06 1.5E-10 72.5 5.9 89 16-109 1-107 (130)
133 PRK14971 DNA polymerase III su 98.1 7.3E-05 1.6E-09 83.3 15.2 180 157-342 15-218 (614)
134 PRK10865 protein disaggregatio 98.1 7.2E-05 1.6E-09 87.0 15.7 170 137-315 160-354 (857)
135 PRK14948 DNA polymerase III su 98.0 0.0001 2.2E-09 82.2 15.7 182 157-344 14-220 (620)
136 TIGR02880 cbbX_cfxQ probable R 98.0 9.2E-05 2E-09 74.8 14.0 154 160-315 23-208 (284)
137 CHL00181 cbbX CbbX; Provisiona 98.0 0.00023 4.9E-09 72.0 16.6 155 160-316 24-210 (287)
138 PRK12422 chromosomal replicati 98.0 6.4E-05 1.4E-09 80.6 13.3 151 182-339 141-306 (445)
139 PF00004 AAA: ATPase family as 98.0 6.5E-05 1.4E-09 66.5 11.2 67 185-255 1-69 (132)
140 TIGR03346 chaperone_ClpB ATP-d 98.0 6.8E-05 1.5E-09 87.5 14.3 154 157-315 171-349 (852)
141 PRK05707 DNA polymerase III su 98.0 0.00012 2.6E-09 75.2 14.4 153 182-346 22-203 (328)
142 PRK14086 dnaA chromosomal repl 98.0 8.2E-05 1.8E-09 81.3 13.7 155 182-343 314-485 (617)
143 PRK06647 DNA polymerase III su 98.0 0.00014 3E-09 80.2 15.5 181 157-343 14-217 (563)
144 PF14516 AAA_35: AAA-like doma 98.0 0.00065 1.4E-08 70.4 19.8 185 157-352 9-245 (331)
145 PF13191 AAA_16: AAA ATPase do 98.0 6.9E-06 1.5E-10 77.7 4.2 50 160-209 1-51 (185)
146 TIGR01241 FtsH_fam ATP-depende 97.9 0.00014 3E-09 80.0 14.8 176 157-339 53-259 (495)
147 TIGR02903 spore_lon_C ATP-depe 97.9 6.9E-05 1.5E-09 83.8 12.2 48 157-206 152-199 (615)
148 PRK07399 DNA polymerase III su 97.9 0.00033 7.2E-09 71.6 15.8 179 159-346 4-221 (314)
149 COG1222 RPT1 ATP-dependent 26S 97.9 0.00021 4.5E-09 71.4 13.6 203 157-367 149-394 (406)
150 PRK05563 DNA polymerase III su 97.9 0.00033 7.1E-09 77.6 16.4 181 157-342 14-216 (559)
151 COG0593 DnaA ATPase involved i 97.9 0.00036 7.7E-09 72.6 15.5 131 181-316 112-258 (408)
152 PRK14965 DNA polymerase III su 97.9 0.00012 2.6E-09 81.4 12.5 178 157-340 14-214 (576)
153 PRK11034 clpA ATP-dependent Cl 97.9 0.00011 2.4E-09 83.5 12.2 152 158-315 185-362 (758)
154 PF13401 AAA_22: AAA domain; P 97.8 7.6E-05 1.6E-09 66.1 8.6 98 182-281 4-125 (131)
155 KOG1909 Ran GTPase-activating 97.8 1.3E-05 2.8E-10 79.3 3.6 129 487-616 90-253 (382)
156 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00025 5.4E-09 76.6 13.5 157 157-317 226-407 (489)
157 KOG4579 Leucine-rich repeat (L 97.8 8.3E-07 1.8E-11 75.8 -4.3 106 491-599 29-141 (177)
158 TIGR01243 CDC48 AAA family ATP 97.8 0.0004 8.7E-09 80.1 15.5 155 157-315 451-635 (733)
159 PF12799 LRR_4: Leucine Rich r 97.8 3.2E-05 6.9E-10 53.5 3.8 34 582-615 2-35 (44)
160 TIGR01243 CDC48 AAA family ATP 97.8 0.00032 6.9E-09 81.0 14.3 155 157-315 176-359 (733)
161 PRK08769 DNA polymerase III su 97.7 0.0012 2.5E-08 67.4 16.2 169 168-347 13-209 (319)
162 PF12799 LRR_4: Leucine Rich r 97.7 4.5E-05 9.7E-10 52.8 4.0 40 557-597 1-40 (44)
163 COG1474 CDC6 Cdc6-related prot 97.7 0.0011 2.4E-08 69.1 15.4 187 157-345 15-237 (366)
164 PRK08181 transposase; Validate 97.7 0.00011 2.3E-09 73.2 7.5 97 183-281 107-208 (269)
165 KOG0531 Protein phosphatase 1, 97.6 7.3E-06 1.6E-10 88.1 -1.4 136 511-650 96-247 (414)
166 COG1373 Predicted ATPase (AAA+ 97.6 0.0006 1.3E-08 72.3 12.9 135 166-311 24-163 (398)
167 PRK09376 rho transcription ter 97.6 8E-05 1.7E-09 76.5 5.9 40 182-221 169-209 (416)
168 PRK08116 hypothetical protein; 97.6 0.00023 4.9E-09 71.2 8.4 97 183-281 115-220 (268)
169 PRK06871 DNA polymerase III su 97.6 0.0022 4.9E-08 65.5 15.4 165 169-343 12-200 (325)
170 KOG4579 Leucine-rich repeat (L 97.6 4.2E-06 9.2E-11 71.6 -3.6 131 512-652 29-163 (177)
171 PRK09183 transposase/IS protei 97.6 0.00012 2.7E-09 72.8 6.1 97 183-281 103-205 (259)
172 PLN00020 ribulose bisphosphate 97.5 0.0011 2.5E-08 67.3 12.7 71 180-254 146-222 (413)
173 COG2255 RuvB Holliday junction 97.5 0.00037 8.1E-09 67.4 8.8 259 157-434 24-311 (332)
174 PF08357 SEFIR: SEFIR domain; 97.5 0.00013 2.8E-09 66.3 5.3 64 17-80 2-70 (150)
175 TIGR00602 rad24 checkpoint pro 97.5 0.0012 2.6E-08 73.3 13.7 51 157-207 82-135 (637)
176 KOG1644 U2-associated snRNP A' 97.5 0.00024 5.3E-09 65.2 6.7 101 511-613 43-149 (233)
177 smart00382 AAA ATPases associa 97.5 0.00032 7E-09 62.5 7.4 75 183-257 3-91 (148)
178 KOG0744 AAA+-type ATPase [Post 97.5 0.0011 2.4E-08 65.3 11.1 75 182-256 177-262 (423)
179 KOG0531 Protein phosphatase 1, 97.5 3.9E-05 8.5E-10 82.4 1.3 127 511-648 73-199 (414)
180 cd01128 rho_factor Transcripti 97.4 0.00019 4.1E-09 70.6 5.7 39 182-220 16-55 (249)
181 PRK10536 hypothetical protein; 97.4 0.00068 1.5E-08 66.0 9.2 56 157-216 53-110 (262)
182 PRK07993 DNA polymerase III su 97.4 0.0035 7.5E-08 64.8 14.9 166 169-344 12-202 (334)
183 PRK06526 transposase; Provisio 97.4 0.0002 4.4E-09 70.8 5.5 28 182-209 98-125 (254)
184 PRK08058 DNA polymerase III su 97.4 0.0031 6.8E-08 65.3 14.6 146 160-314 6-181 (329)
185 PRK12377 putative replication 97.4 0.00048 1E-08 67.7 7.9 70 182-253 101-172 (248)
186 PF13177 DNA_pol3_delta2: DNA 97.4 0.0014 2.9E-08 60.4 10.5 134 163-303 1-162 (162)
187 KOG0731 AAA+-type ATPase conta 97.4 0.0063 1.4E-07 67.8 17.3 179 157-342 309-520 (774)
188 PF05673 DUF815: Protein of un 97.4 0.0013 2.9E-08 63.2 10.6 100 157-267 25-132 (249)
189 PRK06090 DNA polymerase III su 97.4 0.011 2.4E-07 60.3 17.9 165 169-346 13-201 (319)
190 COG1223 Predicted ATPase (AAA+ 97.4 0.0049 1.1E-07 58.9 13.7 155 157-315 119-297 (368)
191 KOG0730 AAA+-type ATPase [Post 97.3 0.0035 7.6E-08 67.7 13.6 154 159-316 434-616 (693)
192 TIGR02639 ClpA ATP-dependent C 97.3 0.0027 5.9E-08 73.1 13.8 110 158-267 453-578 (731)
193 KOG1909 Ran GTPase-activating 97.3 5.9E-05 1.3E-09 74.8 0.2 127 489-616 157-310 (382)
194 COG2812 DnaX DNA polymerase II 97.3 0.0015 3.2E-08 70.3 10.6 177 157-338 14-212 (515)
195 PF02562 PhoH: PhoH-like prote 97.3 0.0011 2.4E-08 62.7 8.4 111 164-281 5-155 (205)
196 PRK06921 hypothetical protein; 97.2 0.00069 1.5E-08 67.7 7.0 68 182-253 117-186 (266)
197 PF01695 IstB_IS21: IstB-like 97.2 0.00022 4.7E-09 66.6 3.1 72 182-255 47-119 (178)
198 PRK10733 hflB ATP-dependent me 97.2 0.0047 1E-07 69.9 14.3 130 183-316 186-336 (644)
199 PRK07952 DNA replication prote 97.2 0.00089 1.9E-08 65.6 7.4 86 168-255 85-173 (244)
200 KOG0741 AAA+-type ATPase [Post 97.2 0.0037 7.9E-08 65.6 11.9 128 180-314 536-685 (744)
201 KOG1644 U2-associated snRNP A' 97.2 0.00066 1.4E-08 62.5 5.7 106 533-644 42-149 (233)
202 TIGR00767 rho transcription te 97.2 0.0006 1.3E-08 70.6 6.1 38 182-219 168-206 (415)
203 KOG0733 Nuclear AAA ATPase (VC 97.2 0.0041 8.8E-08 66.5 12.1 130 183-316 546-693 (802)
204 TIGR00763 lon ATP-dependent pr 97.2 0.0016 3.4E-08 75.5 10.0 52 159-210 320-375 (775)
205 KOG2120 SCF ubiquitin ligase, 97.2 2.2E-05 4.7E-10 76.0 -4.4 151 488-644 209-372 (419)
206 KOG1859 Leucine-rich repeat pr 97.1 1.8E-05 4E-10 85.1 -5.4 151 486-650 106-269 (1096)
207 PRK06964 DNA polymerase III su 97.1 0.0053 1.2E-07 63.2 12.6 92 243-346 131-225 (342)
208 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0075 1.6E-07 64.5 13.7 155 157-315 188-374 (802)
209 TIGR02640 gas_vesic_GvpN gas v 97.1 0.01 2.2E-07 59.3 14.4 38 167-208 10-47 (262)
210 KOG2120 SCF ubiquitin ligase, 97.1 9.9E-06 2.1E-10 78.3 -7.0 151 490-646 186-349 (419)
211 KOG3665 ZYG-1-like serine/thre 97.1 0.00021 4.6E-09 80.5 2.2 124 489-614 122-260 (699)
212 TIGR02902 spore_lonB ATP-depen 97.1 0.0029 6.3E-08 69.8 11.0 47 157-205 63-109 (531)
213 COG0466 Lon ATP-dependent Lon 97.1 0.0034 7.3E-08 68.6 10.8 152 159-315 323-508 (782)
214 cd01133 F1-ATPase_beta F1 ATP 97.1 0.0017 3.6E-08 64.3 7.7 36 182-217 69-104 (274)
215 PRK10865 protein disaggregatio 97.1 0.0072 1.6E-07 70.6 14.1 107 159-266 568-694 (857)
216 KOG2543 Origin recognition com 97.1 0.0063 1.4E-07 61.6 11.5 154 157-314 4-192 (438)
217 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0071 1.5E-07 70.9 13.5 50 159-208 565-621 (852)
218 PRK11331 5-methylcytosine-spec 97.0 0.001 2.2E-08 70.0 5.8 54 159-216 175-230 (459)
219 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0028 6.1E-08 73.7 9.9 50 159-208 566-622 (852)
220 PRK06835 DNA replication prote 97.0 0.0017 3.6E-08 66.8 6.9 97 183-281 184-288 (329)
221 COG0464 SpoVK ATPases of the A 96.9 0.025 5.4E-07 62.4 16.6 155 158-316 241-424 (494)
222 PF14532 Sigma54_activ_2: Sigm 96.9 0.001 2.2E-08 59.5 4.5 105 162-281 1-109 (138)
223 PRK10787 DNA-binding ATP-depen 96.9 0.0032 7E-08 72.4 9.6 153 159-315 322-506 (784)
224 KOG3665 ZYG-1-like serine/thre 96.9 0.00035 7.5E-09 78.8 1.7 124 488-613 147-284 (699)
225 KOG0734 AAA+-type ATPase conta 96.9 0.012 2.7E-07 61.9 12.7 154 158-315 303-484 (752)
226 PF13207 AAA_17: AAA domain; P 96.9 0.00076 1.6E-08 58.7 3.6 23 184-206 1-23 (121)
227 COG1484 DnaC DNA replication p 96.9 0.0017 3.8E-08 64.3 6.5 28 181-208 104-131 (254)
228 PRK08939 primosomal protein Dn 96.9 0.0016 3.5E-08 66.3 6.5 116 163-280 135-259 (306)
229 CHL00095 clpC Clp protease ATP 96.9 0.0034 7.4E-08 73.3 9.8 122 159-281 509-661 (821)
230 KOG0735 AAA+-type ATPase [Post 96.9 0.016 3.5E-07 63.1 13.8 160 182-345 431-615 (952)
231 cd00561 CobA_CobO_BtuR ATP:cor 96.9 0.0035 7.5E-08 56.8 7.6 101 183-283 3-139 (159)
232 PRK08699 DNA polymerase III su 96.9 0.012 2.6E-07 60.5 12.6 131 182-314 21-184 (325)
233 COG0470 HolB ATPase involved i 96.9 0.0054 1.2E-07 63.6 10.3 146 160-307 2-173 (325)
234 COG0542 clpA ATP-binding subun 96.9 0.0034 7.4E-08 70.3 9.0 109 159-268 491-619 (786)
235 smart00763 AAA_PrkA PrkA AAA d 96.9 0.0008 1.7E-08 68.9 3.7 49 159-207 51-103 (361)
236 PRK05541 adenylylsulfate kinas 96.9 0.0083 1.8E-07 56.1 10.4 76 181-256 6-89 (176)
237 COG0542 clpA ATP-binding subun 96.8 0.012 2.6E-07 66.1 12.6 153 158-313 169-344 (786)
238 KOG2739 Leucine-rich acidic nu 96.8 0.00031 6.8E-09 67.3 0.1 57 511-568 44-102 (260)
239 PHA02244 ATPase-like protein 96.8 0.0045 9.7E-08 63.5 8.0 47 159-209 96-146 (383)
240 PRK06696 uridine kinase; Valid 96.8 0.0018 3.8E-08 63.2 5.0 46 164-209 3-49 (223)
241 PF04665 Pox_A32: Poxvirus A32 96.7 0.0039 8.5E-08 60.4 7.0 35 183-217 14-48 (241)
242 PHA00729 NTP-binding motif con 96.7 0.0043 9.4E-08 59.4 7.1 26 182-207 17-42 (226)
243 PRK11034 clpA ATP-dependent Cl 96.7 0.0061 1.3E-07 69.6 9.1 49 159-207 458-513 (758)
244 PRK08118 topology modulation p 96.6 0.0016 3.6E-08 60.2 3.6 32 184-215 3-37 (167)
245 cd01120 RecA-like_NTPases RecA 96.6 0.0093 2E-07 54.6 8.6 33 184-216 1-33 (165)
246 COG5238 RNA1 Ran GTPase-activa 96.6 0.00062 1.4E-08 65.3 0.6 157 488-648 29-227 (388)
247 KOG0991 Replication factor C, 96.6 0.0036 7.8E-08 58.8 5.5 49 157-207 25-73 (333)
248 PRK09361 radB DNA repair and r 96.6 0.0097 2.1E-07 58.1 8.9 48 170-217 11-58 (225)
249 COG1618 Predicted nucleotide k 96.6 0.0023 4.9E-08 56.8 3.8 34 183-216 6-40 (179)
250 KOG2982 Uncharacterized conser 96.6 0.0034 7.5E-08 61.2 5.3 156 487-643 95-287 (418)
251 KOG0727 26S proteasome regulat 96.6 0.016 3.4E-07 55.2 9.4 153 159-315 155-339 (408)
252 COG2607 Predicted ATPase (AAA+ 96.6 0.021 4.5E-07 54.3 10.2 101 157-267 58-165 (287)
253 PF10443 RNA12: RNA12 protein; 96.6 0.077 1.7E-06 55.4 15.3 191 164-357 1-290 (431)
254 PF01583 APS_kinase: Adenylyls 96.5 0.0078 1.7E-07 54.3 6.8 35 183-217 3-37 (156)
255 PRK07667 uridine kinase; Provi 96.5 0.0052 1.1E-07 58.4 5.9 41 168-208 3-43 (193)
256 KOG0739 AAA+-type ATPase [Post 96.5 0.077 1.7E-06 52.0 13.6 98 154-255 128-236 (439)
257 KOG2227 Pre-initiation complex 96.4 0.053 1.1E-06 56.6 13.2 158 157-315 148-338 (529)
258 KOG0652 26S proteasome regulat 96.4 0.12 2.7E-06 49.6 14.4 217 103-331 117-372 (424)
259 COG1875 NYN ribonuclease and A 96.4 0.012 2.6E-07 59.2 8.1 24 180-203 243-266 (436)
260 KOG2739 Leucine-rich acidic nu 96.4 0.0023 5E-08 61.5 2.9 61 555-615 63-127 (260)
261 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.022 4.8E-07 51.2 9.2 102 182-287 26-132 (144)
262 COG0465 HflB ATP-dependent Zn 96.3 0.04 8.7E-07 60.3 12.4 151 157-315 148-333 (596)
263 KOG2982 Uncharacterized conser 96.3 0.00052 1.1E-08 66.7 -1.7 83 511-594 72-159 (418)
264 PRK11608 pspF phage shock prot 96.3 0.11 2.5E-06 53.6 15.3 48 158-205 5-52 (326)
265 PF13671 AAA_33: AAA domain; P 96.3 0.01 2.2E-07 53.3 6.7 24 184-207 1-24 (143)
266 KOG0651 26S proteasome regulat 96.3 0.015 3.3E-07 57.2 8.0 116 182-300 166-301 (388)
267 cd01131 PilT Pilus retraction 96.3 0.022 4.8E-07 54.3 9.2 100 183-285 2-112 (198)
268 cd03283 ABC_MutS-like MutS-lik 96.3 0.031 6.7E-07 53.3 10.1 104 183-288 26-154 (199)
269 PF13238 AAA_18: AAA domain; P 96.3 0.0035 7.7E-08 55.0 3.4 22 185-206 1-22 (129)
270 PF05621 TniB: Bacterial TniB 96.2 0.076 1.6E-06 53.0 12.7 187 157-344 32-259 (302)
271 KOG2004 Mitochondrial ATP-depe 96.2 0.0087 1.9E-07 65.2 6.5 150 159-315 411-596 (906)
272 PRK04132 replication factor C 96.2 0.039 8.4E-07 63.4 12.1 152 187-344 569-729 (846)
273 PF08433 KTI12: Chromatin asso 96.2 0.011 2.5E-07 58.9 7.0 75 183-258 2-84 (270)
274 TIGR01817 nifA Nif-specific re 96.2 0.084 1.8E-06 58.8 14.6 50 157-206 194-243 (534)
275 KOG0736 Peroxisome assembly fa 96.2 0.019 4.2E-07 63.1 9.0 100 152-255 665-775 (953)
276 PRK15455 PrkA family serine pr 96.2 0.005 1.1E-07 66.5 4.4 50 159-208 76-129 (644)
277 PRK06762 hypothetical protein; 96.2 0.0089 1.9E-07 55.3 5.7 24 183-206 3-26 (166)
278 cd03222 ABC_RNaseL_inhibitor T 96.2 0.021 4.6E-07 53.2 8.1 113 182-300 25-146 (177)
279 PRK07261 topology modulation p 96.2 0.0041 8.9E-08 57.8 3.3 65 184-256 2-69 (171)
280 CHL00206 ycf2 Ycf2; Provisiona 96.1 0.098 2.1E-06 63.9 15.1 25 181-205 1629-1653(2281)
281 PRK04296 thymidine kinase; Pro 96.1 0.026 5.7E-07 53.4 8.7 98 183-283 3-117 (190)
282 cd01129 PulE-GspE PulE/GspE Th 96.1 0.026 5.6E-07 56.4 9.0 100 163-265 63-170 (264)
283 PF07726 AAA_3: ATPase family 96.1 0.0027 5.9E-08 54.6 1.7 32 185-216 2-33 (131)
284 TIGR03574 selen_PSTK L-seryl-t 96.1 0.034 7.3E-07 55.3 9.7 26 184-209 1-26 (249)
285 PF13604 AAA_30: AAA domain; P 96.1 0.016 3.5E-07 55.1 7.0 108 169-281 8-130 (196)
286 PRK13531 regulatory ATPase Rav 96.0 0.0065 1.4E-07 64.7 4.4 47 158-208 19-65 (498)
287 COG0703 AroK Shikimate kinase 96.0 0.12 2.5E-06 47.3 11.8 28 183-210 3-30 (172)
288 PF00485 PRK: Phosphoribulokin 96.0 0.0065 1.4E-07 57.8 3.8 25 184-208 1-25 (194)
289 PF00910 RNA_helicase: RNA hel 96.0 0.0053 1.1E-07 52.1 2.7 26 185-210 1-26 (107)
290 KOG0729 26S proteasome regulat 96.0 0.033 7.2E-07 53.5 8.3 92 159-255 177-281 (435)
291 cd02027 APSK Adenosine 5'-phos 95.9 0.063 1.4E-06 48.6 9.8 24 184-207 1-24 (149)
292 TIGR02012 tigrfam_recA protein 95.9 0.029 6.3E-07 57.2 8.3 48 170-217 42-90 (321)
293 KOG0730 AAA+-type ATPase [Post 95.9 0.045 9.8E-07 59.5 10.0 153 159-315 184-364 (693)
294 TIGR00708 cobA cob(I)alamin ad 95.9 0.047 1E-06 50.1 8.8 102 182-283 5-141 (173)
295 cd02019 NK Nucleoside/nucleoti 95.9 0.0075 1.6E-07 46.5 3.1 23 184-206 1-23 (69)
296 KOG0738 AAA+-type ATPase [Post 95.9 0.27 6E-06 50.2 14.6 72 132-207 189-270 (491)
297 COG3267 ExeA Type II secretory 95.8 0.38 8.2E-06 46.6 14.8 167 181-349 50-248 (269)
298 KOG0726 26S proteasome regulat 95.8 0.044 9.5E-07 53.5 8.6 55 157-211 183-248 (440)
299 PTZ00301 uridine kinase; Provi 95.8 0.0091 2E-07 57.2 4.0 29 182-210 3-31 (210)
300 PRK09354 recA recombinase A; P 95.8 0.036 7.7E-07 57.0 8.5 49 169-217 46-95 (349)
301 cd03216 ABC_Carb_Monos_I This 95.8 0.044 9.6E-07 50.4 8.4 105 182-287 26-147 (163)
302 KOG2228 Origin recognition com 95.8 0.048 1E-06 54.5 8.9 158 157-315 22-219 (408)
303 cd00983 recA RecA is a bacter 95.8 0.037 8.1E-07 56.4 8.4 48 170-217 42-90 (325)
304 KOG0735 AAA+-type ATPase [Post 95.8 0.25 5.4E-06 54.4 14.7 152 160-315 668-848 (952)
305 KOG1969 DNA replication checkp 95.7 0.016 3.6E-07 63.3 5.9 26 180-205 324-349 (877)
306 PRK03839 putative kinase; Prov 95.7 0.0086 1.9E-07 56.2 3.5 24 184-207 2-25 (180)
307 KOG0736 Peroxisome assembly fa 95.7 0.31 6.7E-06 54.1 15.4 150 161-315 403-576 (953)
308 PRK08233 hypothetical protein; 95.7 0.0094 2E-07 56.0 3.7 26 182-207 3-28 (182)
309 PRK11889 flhF flagellar biosyn 95.7 0.087 1.9E-06 54.7 10.7 28 181-208 240-267 (436)
310 cd01121 Sms Sms (bacterial rad 95.7 0.021 4.6E-07 59.8 6.5 49 169-217 69-117 (372)
311 PRK05480 uridine/cytidine kina 95.7 0.011 2.4E-07 57.0 4.1 27 180-206 4-30 (209)
312 KOG0743 AAA+-type ATPase [Post 95.7 0.21 4.6E-06 52.2 13.5 155 183-353 236-417 (457)
313 COG4088 Predicted nucleotide k 95.7 0.023 5E-07 52.6 5.8 34 183-216 2-35 (261)
314 KOG0728 26S proteasome regulat 95.7 0.12 2.6E-06 49.4 10.6 150 158-315 145-331 (404)
315 KOG0737 AAA+-type ATPase [Post 95.7 0.11 2.5E-06 52.6 11.1 149 182-340 127-296 (386)
316 PRK12608 transcription termina 95.7 0.027 5.7E-07 58.2 6.9 40 170-210 122-161 (380)
317 COG2884 FtsE Predicted ATPase 95.7 0.072 1.6E-06 49.0 8.7 52 236-289 147-204 (223)
318 PF00406 ADK: Adenylate kinase 95.6 0.041 8.8E-07 49.9 7.4 20 187-206 1-20 (151)
319 TIGR00150 HI0065_YjeE ATPase, 95.6 0.016 3.5E-07 50.8 4.4 39 168-206 8-46 (133)
320 PF00560 LRR_1: Leucine Rich R 95.6 0.0044 9.5E-08 35.6 0.6 21 582-602 1-21 (22)
321 PRK04040 adenylate kinase; Pro 95.6 0.012 2.6E-07 55.6 3.8 25 183-207 3-27 (188)
322 PRK00625 shikimate kinase; Pro 95.6 0.01 2.2E-07 55.0 3.3 24 184-207 2-25 (173)
323 smart00534 MUTSac ATPase domai 95.6 0.068 1.5E-06 50.4 9.0 104 184-288 1-128 (185)
324 TIGR02237 recomb_radB DNA repa 95.6 0.019 4E-07 55.4 5.2 45 174-218 4-48 (209)
325 PF07728 AAA_5: AAA domain (dy 95.6 0.011 2.3E-07 52.9 3.3 23 185-207 2-24 (139)
326 TIGR00235 udk uridine kinase. 95.6 0.013 2.9E-07 56.4 4.1 28 180-207 4-31 (207)
327 TIGR02858 spore_III_AA stage I 95.5 0.075 1.6E-06 53.0 9.4 102 181-286 110-233 (270)
328 cd01394 radB RadB. The archaea 95.5 0.025 5.4E-07 55.0 5.9 49 169-217 6-54 (218)
329 PRK00131 aroK shikimate kinase 95.5 0.013 2.8E-07 54.6 3.7 26 182-207 4-29 (175)
330 COG1066 Sms Predicted ATP-depe 95.5 0.036 7.9E-07 57.0 7.0 86 168-254 79-178 (456)
331 PRK07132 DNA polymerase III su 95.5 0.56 1.2E-05 47.6 15.6 162 168-346 5-185 (299)
332 cd03214 ABC_Iron-Siderophores_ 95.5 0.089 1.9E-06 49.3 9.3 105 182-287 25-163 (180)
333 COG0529 CysC Adenylylsulfate k 95.5 0.057 1.2E-06 49.0 7.3 52 181-232 22-75 (197)
334 PRK09270 nucleoside triphospha 95.4 0.021 4.6E-07 55.9 5.2 30 180-209 31-60 (229)
335 KOG2035 Replication factor C, 95.4 0.13 2.8E-06 50.1 10.1 199 158-366 12-259 (351)
336 cd03247 ABCC_cytochrome_bd The 95.4 0.14 3E-06 47.9 10.5 104 182-286 28-161 (178)
337 TIGR01360 aden_kin_iso1 adenyl 95.4 0.014 3E-07 55.2 3.7 26 181-206 2-27 (188)
338 COG0572 Udk Uridine kinase [Nu 95.4 0.019 4.2E-07 54.4 4.4 30 180-209 6-35 (218)
339 COG5238 RNA1 Ran GTPase-activa 95.3 0.0077 1.7E-07 58.1 1.6 133 483-616 86-254 (388)
340 KOG1514 Origin recognition com 95.3 0.42 9E-06 52.7 14.6 51 157-207 394-447 (767)
341 cd00267 ABC_ATPase ABC (ATP-bi 95.3 0.11 2.4E-06 47.4 9.2 105 183-288 26-146 (157)
342 PF10137 TIR-like: Predicted n 95.3 0.05 1.1E-06 47.1 6.3 60 17-79 1-61 (125)
343 PRK06547 hypothetical protein; 95.3 0.018 4E-07 53.3 3.9 27 180-206 13-39 (172)
344 cd03243 ABC_MutS_homologs The 95.3 0.098 2.1E-06 50.1 9.1 22 183-204 30-51 (202)
345 KOG1051 Chaperone HSP104 and r 95.3 0.08 1.7E-06 60.6 9.5 97 159-256 562-672 (898)
346 PF03308 ArgK: ArgK protein; 95.3 0.026 5.7E-07 54.8 5.0 42 168-209 15-56 (266)
347 PRK13947 shikimate kinase; Pro 95.2 0.015 3.3E-07 54.0 3.3 25 184-208 3-27 (171)
348 cd03285 ABC_MSH2_euk MutS2 hom 95.2 0.14 3E-06 49.8 10.0 25 181-205 29-53 (222)
349 COG1224 TIP49 DNA helicase TIP 95.2 0.035 7.6E-07 55.8 5.8 55 157-211 37-94 (450)
350 cd03238 ABC_UvrA The excision 95.2 0.17 3.7E-06 47.1 10.1 23 182-204 21-43 (176)
351 cd01858 NGP_1 NGP-1. Autoanti 95.2 0.12 2.7E-06 47.1 9.1 44 162-205 81-125 (157)
352 TIGR00390 hslU ATP-dependent p 95.2 0.022 4.9E-07 59.5 4.5 52 159-210 12-75 (441)
353 PF03969 AFG1_ATPase: AFG1-lik 95.2 0.022 4.7E-07 59.4 4.4 98 181-282 61-167 (362)
354 KOG1970 Checkpoint RAD17-RFC c 95.2 0.12 2.6E-06 55.1 9.7 47 160-206 83-134 (634)
355 PF06068 TIP49: TIP49 C-termin 95.2 0.032 6.9E-07 57.0 5.4 59 157-215 22-83 (398)
356 cd03223 ABCD_peroxisomal_ALDP 95.2 0.17 3.6E-06 46.8 9.9 102 182-286 27-152 (166)
357 cd00227 CPT Chloramphenicol (C 95.2 0.019 4.2E-07 53.6 3.7 25 183-207 3-27 (175)
358 TIGR00416 sms DNA repair prote 95.2 0.048 1E-06 58.9 7.1 50 168-217 80-129 (454)
359 PRK05986 cob(I)alamin adenolsy 95.1 0.084 1.8E-06 49.3 7.7 101 182-282 22-158 (191)
360 TIGR00455 apsK adenylylsulfate 95.1 0.25 5.5E-06 46.4 11.3 27 181-207 17-43 (184)
361 PRK15429 formate hydrogenlyase 95.1 0.057 1.2E-06 62.0 8.1 50 157-206 374-423 (686)
362 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.091 2E-06 50.7 8.2 107 182-288 29-160 (213)
363 cd03282 ABC_MSH4_euk MutS4 hom 95.0 0.14 3.1E-06 48.9 9.4 106 182-289 29-158 (204)
364 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.017 3.8E-07 54.3 3.1 23 184-206 1-23 (183)
365 PRK00889 adenylylsulfate kinas 95.0 0.032 6.9E-07 52.1 4.8 27 182-208 4-30 (175)
366 COG1102 Cmk Cytidylate kinase 95.0 0.02 4.3E-07 51.0 3.1 25 184-208 2-26 (179)
367 COG1121 ZnuC ABC-type Mn/Zn tr 95.0 0.075 1.6E-06 51.9 7.4 51 236-288 149-205 (254)
368 cd02024 NRK1 Nicotinamide ribo 95.0 0.019 4E-07 53.9 3.0 23 184-206 1-23 (187)
369 PRK09280 F0F1 ATP synthase sub 95.0 0.05 1.1E-06 58.0 6.6 31 182-212 144-174 (463)
370 cd02028 UMPK_like Uridine mono 95.0 0.027 5.8E-07 52.8 4.1 25 184-208 1-25 (179)
371 KOG2123 Uncharacterized conser 95.0 0.0012 2.6E-08 63.7 -5.1 83 532-618 18-102 (388)
372 COG3854 SpoIIIAA ncharacterize 95.0 0.15 3.2E-06 48.3 8.7 94 184-280 139-251 (308)
373 cd03228 ABCC_MRP_Like The MRP 94.9 0.23 4.9E-06 46.1 10.3 105 182-287 28-160 (171)
374 cd02020 CMPK Cytidine monophos 94.9 0.021 4.6E-07 51.4 3.1 23 184-206 1-23 (147)
375 PRK05201 hslU ATP-dependent pr 94.9 0.03 6.4E-07 58.6 4.5 52 158-209 14-77 (443)
376 KOG0066 eIF2-interacting prote 94.9 0.19 4E-06 52.0 9.9 28 178-205 609-636 (807)
377 COG1936 Predicted nucleotide k 94.9 0.021 4.5E-07 51.6 2.8 20 184-203 2-21 (180)
378 cd02021 GntK Gluconate kinase 94.9 0.021 4.5E-07 51.8 3.0 23 184-206 1-23 (150)
379 COG0714 MoxR-like ATPases [Gen 94.8 0.037 8E-07 57.5 5.2 54 159-216 24-77 (329)
380 PRK13949 shikimate kinase; Pro 94.8 0.025 5.3E-07 52.4 3.4 24 184-207 3-26 (169)
381 PF00158 Sigma54_activat: Sigm 94.8 0.027 5.8E-07 52.0 3.6 45 161-205 1-45 (168)
382 TIGR01650 PD_CobS cobaltochela 94.8 0.045 9.7E-07 55.7 5.5 54 152-210 39-92 (327)
383 cd03287 ABC_MSH3_euk MutS3 hom 94.8 0.2 4.3E-06 48.5 9.7 106 182-288 31-160 (222)
384 cd04121 Rab40 Rab40 subfamily. 94.8 0.17 3.8E-06 47.7 9.2 23 183-205 7-29 (189)
385 PRK03846 adenylylsulfate kinas 94.8 0.042 9.1E-07 52.4 5.0 37 180-216 22-58 (198)
386 TIGR01420 pilT_fam pilus retra 94.8 0.081 1.8E-06 55.1 7.6 96 182-280 122-228 (343)
387 cd02023 UMPK Uridine monophosp 94.8 0.021 4.6E-07 54.5 3.0 23 184-206 1-23 (198)
388 PF00448 SRP54: SRP54-type pro 94.8 0.037 7.9E-07 52.6 4.5 27 183-209 2-28 (196)
389 PRK14722 flhF flagellar biosyn 94.8 0.13 2.8E-06 53.6 8.9 29 182-210 137-165 (374)
390 COG4608 AppF ABC-type oligopep 94.8 0.088 1.9E-06 51.5 7.1 129 181-312 38-199 (268)
391 PRK06217 hypothetical protein; 94.8 0.024 5.3E-07 53.3 3.3 23 184-206 3-25 (183)
392 cd01393 recA_like RecA is a b 94.7 0.046 9.9E-07 53.4 5.3 48 170-217 7-60 (226)
393 COG0563 Adk Adenylate kinase a 94.7 0.026 5.6E-07 52.6 3.3 22 184-205 2-23 (178)
394 cd01130 VirB11-like_ATPase Typ 94.7 0.049 1.1E-06 51.4 5.3 80 182-262 25-118 (186)
395 cd00071 GMPK Guanosine monopho 94.7 0.023 4.9E-07 50.6 2.8 27 184-210 1-27 (137)
396 PF00437 T2SE: Type II/IV secr 94.7 0.062 1.3E-06 54.1 6.2 117 159-279 104-228 (270)
397 TIGR02782 TrbB_P P-type conjug 94.7 0.15 3.2E-06 52.0 8.9 80 183-262 133-222 (299)
398 COG0467 RAD55 RecA-superfamily 94.7 0.042 9.1E-07 55.0 4.9 45 173-217 14-58 (260)
399 TIGR01039 atpD ATP synthase, F 94.7 0.1 2.2E-06 55.5 7.9 33 182-214 143-175 (461)
400 cd00464 SK Shikimate kinase (S 94.7 0.027 5.9E-07 51.1 3.3 22 185-206 2-23 (154)
401 PRK14974 cell division protein 94.7 0.31 6.7E-06 50.3 11.2 29 181-209 139-167 (336)
402 KOG3347 Predicted nucleotide k 94.7 0.027 5.9E-07 49.3 2.9 25 182-206 7-31 (176)
403 cd02025 PanK Pantothenate kina 94.7 0.025 5.4E-07 54.9 3.1 24 184-207 1-24 (220)
404 PRK10751 molybdopterin-guanine 94.7 0.04 8.6E-07 50.8 4.3 28 181-208 5-32 (173)
405 PRK12726 flagellar biosynthesi 94.7 0.28 6.1E-06 50.9 10.7 29 181-209 205-233 (407)
406 PRK12597 F0F1 ATP synthase sub 94.6 0.1 2.2E-06 55.9 7.9 28 182-209 143-170 (461)
407 TIGR02322 phosphon_PhnN phosph 94.6 0.03 6.5E-07 52.4 3.5 25 183-207 2-26 (179)
408 PF03266 NTPase_1: NTPase; In 94.6 0.031 6.8E-07 51.6 3.5 24 185-208 2-25 (168)
409 COG4618 ArpD ABC-type protease 94.6 0.13 2.8E-06 54.5 8.2 22 183-204 363-384 (580)
410 COG1703 ArgK Putative periplas 94.6 0.054 1.2E-06 53.4 5.1 41 169-209 38-78 (323)
411 COG1428 Deoxynucleoside kinase 94.6 0.031 6.6E-07 52.4 3.3 26 182-207 4-29 (216)
412 PF03205 MobB: Molybdopterin g 94.6 0.037 8E-07 49.4 3.7 26 183-208 1-26 (140)
413 cd03115 SRP The signal recogni 94.6 0.29 6.2E-06 45.5 10.0 26 184-209 2-27 (173)
414 KOG2170 ATPase of the AAA+ sup 94.6 0.09 2E-06 51.8 6.5 93 165-267 92-203 (344)
415 TIGR01069 mutS2 MutS2 family p 94.6 0.16 3.4E-06 58.7 9.7 175 182-366 322-521 (771)
416 PRK05439 pantothenate kinase; 94.6 0.041 9E-07 55.8 4.5 29 180-208 84-112 (311)
417 PRK12339 2-phosphoglycerate ki 94.6 0.035 7.6E-07 52.7 3.7 25 182-206 3-27 (197)
418 cd03284 ABC_MutS1 MutS1 homolo 94.5 0.28 6E-06 47.4 10.0 105 183-288 31-159 (216)
419 PRK05917 DNA polymerase III su 94.5 0.56 1.2E-05 47.1 12.3 127 169-302 7-154 (290)
420 PRK05342 clpX ATP-dependent pr 94.5 0.045 9.7E-07 58.2 4.8 49 160-208 72-134 (412)
421 TIGR03877 thermo_KaiC_1 KaiC d 94.5 0.066 1.4E-06 52.7 5.7 49 169-217 8-56 (237)
422 PF00154 RecA: recA bacterial 94.5 0.2 4.3E-06 51.1 9.1 50 168-217 38-88 (322)
423 PRK13948 shikimate kinase; Pro 94.5 0.034 7.4E-07 52.0 3.4 28 181-208 9-36 (182)
424 PRK13946 shikimate kinase; Pro 94.5 0.033 7.2E-07 52.4 3.4 25 183-207 11-35 (184)
425 cd01123 Rad51_DMC1_radA Rad51_ 94.5 0.054 1.2E-06 53.2 5.0 37 170-206 7-43 (235)
426 PRK14530 adenylate kinase; Pro 94.4 0.034 7.4E-07 53.8 3.5 24 183-206 4-27 (215)
427 PRK11174 cysteine/glutathione 94.4 0.2 4.4E-06 56.7 10.2 25 182-206 376-400 (588)
428 KOG3928 Mitochondrial ribosome 94.4 0.26 5.7E-06 50.7 9.7 57 294-350 403-460 (461)
429 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.055 1.2E-06 54.0 5.0 38 180-217 34-71 (259)
430 PRK14738 gmk guanylate kinase; 94.4 0.041 8.8E-07 52.9 3.9 29 177-205 8-36 (206)
431 PRK10463 hydrogenase nickel in 94.4 0.064 1.4E-06 53.7 5.2 36 180-215 102-137 (290)
432 PF00625 Guanylate_kin: Guanyl 94.3 0.042 9.1E-07 51.7 3.7 35 182-216 2-36 (183)
433 PRK05057 aroK shikimate kinase 94.3 0.041 8.9E-07 51.1 3.5 25 183-207 5-29 (172)
434 cd03286 ABC_MSH6_euk MutS6 hom 94.3 0.27 5.9E-06 47.4 9.3 107 182-289 30-160 (218)
435 TIGR01313 therm_gnt_kin carboh 94.3 0.032 6.9E-07 51.4 2.7 22 185-206 1-22 (163)
436 PF01078 Mg_chelatase: Magnesi 94.3 0.047 1E-06 51.5 3.8 43 159-205 3-45 (206)
437 PF03193 DUF258: Protein of un 94.2 0.067 1.4E-06 48.6 4.6 35 166-205 24-58 (161)
438 PF10236 DAP3: Mitochondrial r 94.2 0.78 1.7E-05 47.0 13.0 48 296-343 258-306 (309)
439 KOG1532 GTPase XAB1, interacts 94.2 0.053 1.2E-06 52.4 4.1 35 180-214 17-51 (366)
440 PRK09435 membrane ATPase/prote 94.2 0.072 1.6E-06 54.7 5.3 40 169-208 43-82 (332)
441 TIGR03263 guanyl_kin guanylate 94.2 0.038 8.2E-07 51.8 3.1 24 183-206 2-25 (180)
442 TIGR03881 KaiC_arch_4 KaiC dom 94.1 0.087 1.9E-06 51.5 5.7 48 170-217 8-55 (229)
443 PRK13975 thymidylate kinase; P 94.1 0.048 1E-06 51.9 3.7 26 183-208 3-28 (196)
444 PRK15453 phosphoribulokinase; 94.1 0.071 1.5E-06 52.9 4.8 27 181-207 4-30 (290)
445 TIGR02788 VirB11 P-type DNA tr 94.1 0.15 3.3E-06 52.3 7.5 80 182-262 144-236 (308)
446 cd03280 ABC_MutS2 MutS2 homolo 94.1 0.34 7.4E-06 46.2 9.5 21 183-203 29-49 (200)
447 COG2274 SunT ABC-type bacterio 94.1 0.18 3.9E-06 57.4 8.6 24 182-205 499-522 (709)
448 KOG0740 AAA+-type ATPase [Post 94.0 0.73 1.6E-05 48.5 12.4 70 182-255 186-256 (428)
449 PRK13657 cyclic beta-1,2-gluca 93.9 0.27 5.9E-06 55.6 10.0 24 182-205 361-384 (588)
450 TIGR00064 ftsY signal recognit 93.9 0.078 1.7E-06 53.2 4.9 30 180-209 70-99 (272)
451 PF08477 Miro: Miro-like prote 93.9 0.053 1.2E-06 46.7 3.3 21 185-205 2-22 (119)
452 PRK03731 aroL shikimate kinase 93.9 0.051 1.1E-06 50.4 3.4 24 184-207 4-27 (171)
453 PF00560 LRR_1: Leucine Rich R 93.9 0.026 5.6E-07 32.4 0.9 18 512-529 2-19 (22)
454 PRK00300 gmk guanylate kinase; 93.9 0.054 1.2E-06 52.0 3.6 25 182-206 5-29 (205)
455 COG0378 HypB Ni2+-binding GTPa 93.9 0.074 1.6E-06 49.2 4.2 37 182-218 13-49 (202)
456 COG0488 Uup ATPase components 93.9 0.39 8.5E-06 52.7 10.5 59 237-301 450-511 (530)
457 cd01124 KaiC KaiC is a circadi 93.9 0.063 1.4E-06 50.5 4.0 32 185-216 2-33 (187)
458 TIGR00382 clpX endopeptidase C 93.8 0.076 1.6E-06 56.2 4.8 52 159-210 77-144 (413)
459 PHA02774 E1; Provisional 93.8 0.17 3.7E-06 55.1 7.4 40 167-207 420-459 (613)
460 PRK14529 adenylate kinase; Pro 93.8 0.23 5.1E-06 47.9 7.7 23 185-207 3-25 (223)
461 PRK10416 signal recognition pa 93.8 0.11 2.4E-06 53.3 5.8 29 181-209 113-141 (318)
462 PRK05973 replicative DNA helic 93.8 0.098 2.1E-06 51.0 5.1 36 181-216 63-98 (237)
463 PRK04182 cytidylate kinase; Pr 93.8 0.055 1.2E-06 50.6 3.4 24 184-207 2-25 (180)
464 TIGR02533 type_II_gspE general 93.8 0.24 5.2E-06 54.0 8.7 101 162-265 224-332 (486)
465 PF13521 AAA_28: AAA domain; P 93.8 0.044 9.6E-07 50.4 2.7 21 185-205 2-22 (163)
466 PF03215 Rad17: Rad17 cell cyc 93.8 0.057 1.2E-06 59.0 3.9 58 157-216 17-77 (519)
467 COG2019 AdkA Archaeal adenylat 93.8 0.065 1.4E-06 48.1 3.5 25 182-206 4-28 (189)
468 cd01135 V_A-ATPase_B V/A-type 93.8 0.23 5E-06 49.3 7.7 26 182-207 69-94 (276)
469 TIGR00176 mobB molybdopterin-g 93.7 0.058 1.3E-06 49.1 3.3 26 184-209 1-26 (155)
470 PRK14493 putative bifunctional 93.7 0.076 1.7E-06 53.1 4.4 34 183-217 2-35 (274)
471 cd03289 ABCC_CFTR2 The CFTR su 93.7 0.44 9.5E-06 47.9 10.0 25 182-206 30-54 (275)
472 PRK06067 flagellar accessory p 93.7 0.11 2.3E-06 51.1 5.5 49 169-217 12-60 (234)
473 PLN02318 phosphoribulokinase/u 93.7 0.069 1.5E-06 58.2 4.3 33 174-206 57-89 (656)
474 KOG0742 AAA+-type ATPase [Post 93.7 1 2.2E-05 46.4 12.1 29 182-210 384-412 (630)
475 PRK05537 bifunctional sulfate 93.7 0.09 1.9E-06 58.4 5.3 50 159-208 369-418 (568)
476 PRK14527 adenylate kinase; Pro 93.7 0.065 1.4E-06 50.8 3.7 26 181-206 5-30 (191)
477 COG1124 DppF ABC-type dipeptid 93.7 0.056 1.2E-06 51.8 3.1 23 182-204 33-55 (252)
478 PF13245 AAA_19: Part of AAA d 93.7 0.079 1.7E-06 41.6 3.5 23 183-205 11-33 (76)
479 KOG0927 Predicted transporter 93.7 0.19 4.1E-06 53.6 7.2 53 236-289 231-286 (614)
480 TIGR00554 panK_bact pantothena 93.6 0.069 1.5E-06 53.8 3.9 28 180-207 60-87 (290)
481 TIGR00073 hypB hydrogenase acc 93.6 0.082 1.8E-06 50.8 4.4 29 180-208 20-48 (207)
482 PLN02200 adenylate kinase fami 93.6 0.068 1.5E-06 52.3 3.8 25 182-206 43-67 (234)
483 cd01983 Fer4_NifH The Fer4_Nif 93.6 0.066 1.4E-06 43.9 3.2 25 184-208 1-25 (99)
484 TIGR00750 lao LAO/AO transport 93.6 0.1 2.2E-06 53.3 5.2 39 170-208 22-60 (300)
485 TIGR03305 alt_F1F0_F1_bet alte 93.6 0.17 3.6E-06 54.0 6.9 35 182-216 138-173 (449)
486 PRK11176 lipid transporter ATP 93.6 0.32 7E-06 54.9 9.8 24 182-205 369-392 (582)
487 TIGR02524 dot_icm_DotB Dot/Icm 93.6 0.15 3.2E-06 53.3 6.4 84 182-265 134-233 (358)
488 TIGR02525 plasmid_TraJ plasmid 93.6 0.24 5.1E-06 51.9 7.9 83 183-265 150-246 (372)
489 PRK10078 ribose 1,5-bisphospho 93.6 0.057 1.2E-06 50.9 3.1 24 183-206 3-26 (186)
490 PRK00409 recombination and DNA 93.6 0.3 6.5E-06 56.6 9.5 176 181-366 326-526 (782)
491 PF13306 LRR_5: Leucine rich r 93.6 0.19 4E-06 43.9 6.3 116 511-638 13-129 (129)
492 PRK13764 ATPase; Provisional 93.6 0.22 4.8E-06 55.2 8.0 80 183-262 258-342 (602)
493 COG0194 Gmk Guanylate kinase [ 93.5 0.072 1.6E-06 49.0 3.5 25 182-206 4-28 (191)
494 PF00006 ATP-synt_ab: ATP synt 93.5 0.13 2.9E-06 49.4 5.5 26 183-208 16-41 (215)
495 PRK04328 hypothetical protein; 93.5 0.12 2.6E-06 51.2 5.5 48 170-217 11-58 (249)
496 PRK13407 bchI magnesium chelat 93.5 0.07 1.5E-06 55.0 3.8 47 157-206 6-53 (334)
497 PF13504 LRR_7: Leucine rich r 93.5 0.046 1E-06 29.1 1.3 16 582-597 2-17 (17)
498 TIGR02868 CydC thiol reductant 93.5 0.29 6.3E-06 54.6 9.1 25 181-205 360-384 (529)
499 PF06745 KaiC: KaiC; InterPro 93.5 0.072 1.6E-06 52.0 3.8 48 170-217 7-55 (226)
500 PRK14737 gmk guanylate kinase; 93.5 0.069 1.5E-06 50.3 3.5 25 182-206 4-28 (186)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.6e-99 Score=899.43 Aligned_cols=608 Identities=38% Similarity=0.618 Sum_probs=527.3
Q ss_pred CCCCCCCCCCCCCCcceEEEeccccccccchHHHHHHHHhhCCCceeecCCcCCCCcccHHHHHhhhcCcEEEEEecCCc
Q 006018 1 MASSSSSINMIPHPKHDVFLSFRGKDVRHNFVSHLNAALCREKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSEGY 80 (664)
Q Consensus 1 ~~~~~~~~~~~~~~~~dvFis~~~~d~~~~f~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y 80 (664)
|||||||+ ..|+||||+||||+|+|++|++||+++|.++||++|+|+++++|+.|.+++.+||++|+++|||||++|
T Consensus 1 ~~~~~~~~---~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y 77 (1153)
T PLN03210 1 MASSSSSS---RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY 77 (1153)
T ss_pred CCCCCCCC---CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence 67766543 469999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHHHhhhhcCceEEEEEeecCCCcccccc-------------------------------CCCCccccc
Q 006018 81 ASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDAGYCP-------------------------------SLGWMGIFD 129 (664)
Q Consensus 81 ~~s~wc~~El~~~~~~~~~~~~~v~pv~~~v~p~~vr~~~-------------------------------~~g~~~~~~ 129 (664)
|+|+||++||++|++|+++.+++|+||||+|+|+|||+|+ ++|| +
T Consensus 78 a~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~----~ 153 (1153)
T PLN03210 78 ASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGY----H 153 (1153)
T ss_pred ccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCce----e
Confidence 9999999999999999999999999999999999999998 5676 4
Q ss_pred CC--CChhHhHhhhhhccccccccCCCCCCCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 130 IP--TSESVLIEGNVNDISKKLSDLFPSDNKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 130 ~~--~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.. ++|+++|++|+++|.+++..+.+. +.+++|||+++++++..+|..+.+++++|+||||||+||||||+++|+++.
T Consensus 154 ~~~~~~E~~~i~~Iv~~v~~~l~~~~~~-~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 154 SQNWPNEAKMIEEIANDVLGKLNLTPSN-DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred cCCCCCHHHHHHHHHHHHHHhhccccCc-ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 43 789999999999999999877666 788999999999999999987778899999999999999999999999999
Q ss_pred ccCCcceeeccc--hh---hhhcc--------cchhHH--------------hHHHHHHHhcCceEEEEEecCCCHHHHH
Q 006018 208 SHFEGSYFMQNI--RD---ESEKV--------GGLANI--------------HLNFERRRLSRMKVLIVFYDLTDLKQID 260 (664)
Q Consensus 208 ~~f~~~~~~~~~--~~---~~~~~--------~~l~~~--------------~l~~~~~~L~~~~~LlVlDdv~~~~~~~ 260 (664)
.+|++.+|+... .. ..... ..++.. .+..++++++++|+||||||||+.++|+
T Consensus 233 ~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~ 312 (1153)
T PLN03210 233 RQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLD 312 (1153)
T ss_pred hcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHH
Confidence 999999887531 11 10000 001111 1356788899999999999999999999
Q ss_pred HHhccCCCCCCCcEEEEEeCCHHHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCc
Q 006018 261 LLIGRLDGFVPGSRVIITTRDVQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVP 340 (664)
Q Consensus 261 ~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP 340 (664)
.+.+...++++||+||||||++.++..++ ..++|+++.|+.++|++||+++||++..+++++.+++++|+++|+|+|
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~vl~~~~---~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHFLRAHG---IDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP 389 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHHHHhcC---CCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence 99988888899999999999999987766 578999999999999999999999887777788999999999999999
Q ss_pred hhHHHHhhhcCCCCHHHHHHHHHHhhcCCCCcccceeeeecCCCCh-hhhhhhhhcccccCCCCHHHHHHHHHHcCCccc
Q 006018 341 LALQVLGSYLKGMSEEEWESAVNKLKRMPHMDIQKVLKVSYDGLDD-EEQNIFLDTACFFKGNDQYLVMNFLDACRFSAK 419 (664)
Q Consensus 341 Lal~~~a~~l~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~~l~la~f~~~~~~~~~~~~~~~~~~~~~ 419 (664)
|||+++|++|++++.++|+.++++++..+...|..+|++||++|++ .+|.+|+++||||.+.+.+.+..+++.+++.+.
T Consensus 390 LAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~ 469 (1153)
T PLN03210 390 LGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVN 469 (1153)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCch
Confidence 9999999999999999999999999988888899999999999986 589999999999999999999999999999999
Q ss_pred cccceecccceeeeeCCeEEechHHHHHHhHHhhccCcCCCCCcccccccccceeccccCcc------------------
Q 006018 420 IGISRLVGKSLVTISNNKITMHDLLQEMGGEIVRQESIKDPGKRSRLWHPEDIYQVLNENTS------------------ 481 (664)
Q Consensus 420 ~~l~~L~~~~li~~~~~~~~mHdlv~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------------------ 481 (664)
.+++.|++++||+...+++.|||++|+||++++++++ .+|++++++|+++++..++..++.
T Consensus 470 ~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~ 548 (1153)
T PLN03210 470 IGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELH 548 (1153)
T ss_pred hChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceee
Confidence 9999999999999999999999999999999999887 689999999999887766543320
Q ss_pred CCCc--cCcCcccEEE-------------------------------cCCCCCCcccccccc--cccccccccccccccc
Q 006018 482 LPTG--INLDSLKELY-------------------------------LGGCSNLKRFPEISC--NIEDLDLKETAIEELP 526 (664)
Q Consensus 482 lp~~--~~l~~L~~L~-------------------------------l~~~~~~~~~p~~~~--~L~~L~l~~~~i~~lp 526 (664)
++.. ..|++|+.|. +.++. ++.+|..+. +|+.|+|.++.++.+|
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCccCCcEEECcCccccccc
Confidence 0000 1244444444 44432 234444333 7888888888888888
Q ss_pred cccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCC-CCccccccccCCCC
Q 006018 527 SSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEK-DFEKIPSSMKQLSK 605 (664)
Q Consensus 527 ~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n-~i~~lp~~i~~L~~ 605 (664)
..+..+++|+.|+|++|+.+..+| .+..+++|+.|+|++|..+..+|..++++++|+.|++++| .++.+|..+ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 888899999999999888888888 5888999999999999888999999999999999999964 677888766 7889
Q ss_pred CCEEeecCCCCCCcCCCC
Q 006018 606 LSDLRLQNCKRLQSLPEL 623 (664)
Q Consensus 606 L~~L~L~~~~~l~~lp~l 623 (664)
|+.|++++|..++.+|..
T Consensus 706 L~~L~Lsgc~~L~~~p~~ 723 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI 723 (1153)
T ss_pred CCEEeCCCCCCccccccc
Confidence 999999998877766653
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-53 Score=474.61 Aligned_cols=437 Identities=27% Similarity=0.379 Sum_probs=341.0
Q ss_pred eeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH---hhccCCcceeeccchhh---------hhcccc-
Q 006018 162 VGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN---ISSHFEGSYFMQNIRDE---------SEKVGG- 228 (664)
Q Consensus 162 vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~---------~~~~~~- 228 (664)
||.+..++++.+.|..++. .+++|+||||+||||||+.++++ +..+|+.++|+....+. ....+.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccC
Confidence 9999999999999976644 89999999999999999999997 56899999999632211 111110
Q ss_pred ---hhH----HhHHHHHHHhcCceEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHHHh-hcCCccccEEEec
Q 006018 229 ---LAN----IHLNFERRRLSRMKVLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLLKN-HRGSRVGHVFEVK 300 (664)
Q Consensus 229 ---l~~----~~l~~~~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~-~~~~~~~~~~~l~ 300 (664)
..+ .....+.+.|+++|++|||||||+..+|+.+...+|...+||+|++|||+..|+.. ++ +...++++
T Consensus 239 ~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~---~~~~~~v~ 315 (889)
T KOG4658|consen 239 DEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG---VDYPIEVE 315 (889)
T ss_pred CcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc---CCcccccc
Confidence 001 11347788899999999999999999999999999988899999999999999988 55 67889999
Q ss_pred CCCHHHHHHHHHHhhhCCCC-CCccHHHHHHHHHHHhcCCchhHHHHhhhcCCC-CHHHHHHHHHHhhcC-----C--CC
Q 006018 301 ELSYNDSLTLFSRNAFGQNH-PAAGFLELSNIVIKYANGVPLALQVLGSYLKGM-SEEEWESAVNKLKRM-----P--HM 371 (664)
Q Consensus 301 ~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~glPLal~~~a~~l~~~-~~~~w~~~l~~l~~~-----~--~~ 371 (664)
.|+.+|||+||++.+|.... ..+..+++|++++++|+|+|||+.++|+.|+.+ +..+|..+...+... + .+
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 99999999999999986633 334589999999999999999999999999876 778999999988665 1 34
Q ss_pred cccceeeeecCCCChhhhhhhhhcccccCCC--CHHHHHHHHHHcCCc------------cccccceecccceeeeeC--
Q 006018 372 DIQKVLKVSYDGLDDEEQNIFLDTACFFKGN--DQYLVMNFLDACRFS------------AKIGISRLVGKSLVTISN-- 435 (664)
Q Consensus 372 ~i~~~l~~sy~~L~~~~k~~~l~la~f~~~~--~~~~~~~~~~~~~~~------------~~~~l~~L~~~~li~~~~-- 435 (664)
.+..++++||+.|+++.|.||+|||.||+++ +.+.+...|.++|+. +...+..|++++|+....
T Consensus 396 ~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~ 475 (889)
T KOG4658|consen 396 SILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE 475 (889)
T ss_pred hhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc
Confidence 6789999999999988999999999999994 666799999999963 233489999999999875
Q ss_pred ---CeEEechHHHHHHhHHhhccCcCCCCCcccccccccceeccccCccCCCccCcCcccEEEcCCCCCCcccccccc--
Q 006018 436 ---NKITMHDLLQEMGGEIVRQESIKDPGKRSRLWHPEDIYQVLNENTSLPTGINLDSLKELYLGGCSNLKRFPEISC-- 510 (664)
Q Consensus 436 ---~~~~mHdlv~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~-- 510 (664)
..+.|||++||||..+++........ .+...-......|...+....+.+.+-+|.. ..++....
T Consensus 476 ~~~~~~kmHDvvRe~al~ias~~~~~~e~---------~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~-~~~~~~~~~~ 545 (889)
T KOG4658|consen 476 GRKETVKMHDVVREMALWIASDFGKQEEN---------QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKI-EHIAGSSENP 545 (889)
T ss_pred cceeEEEeeHHHHHHHHHHhccccccccc---------eEEECCcCccccccccchhheeEEEEeccch-hhccCCCCCC
Confidence 68999999999999999844321111 1111111222344444455666666666543 22222222
Q ss_pred ccccccccccc--ccccccc-cCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEE
Q 006018 511 NIEDLDLKETA--IEELPSS-IGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLN 587 (664)
Q Consensus 511 ~L~~L~l~~~~--i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 587 (664)
+|+.|-+..|. +..++.. |..++.|++|||++|..+..+|..+++|-+|++|+|+++. +..+|..+++|..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheec
Confidence 57777777765 5555553 6678899999999888888899889999999999998877 668899999999999999
Q ss_pred ccCCCCc-cccccccCCCCCCEEeecCC
Q 006018 588 LAEKDFE-KIPSSMKQLSKLSDLRLQNC 614 (664)
Q Consensus 588 l~~n~i~-~lp~~i~~L~~L~~L~L~~~ 614 (664)
+..+... .+|..+..|++|++|.+-.-
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 9877654 33444455888998888653
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=9.9e-37 Score=272.97 Aligned_cols=137 Identities=29% Similarity=0.508 Sum_probs=122.7
Q ss_pred CCCCCCCcceEEEeccccccccchHHHHHHHHhhCCCceeecC-CcCCCCcccHHHHHhhhcCcEEEEEecCCcccchhh
Q 006018 8 INMIPHPKHDVFLSFRGKDVRHNFVSHLNAALCREKIETFIDD-KLNRGNEISPSLSSAIEGSKISIVIFSEGYASSRWC 86 (664)
Q Consensus 8 ~~~~~~~~~dvFis~~~~d~~~~f~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc 86 (664)
||++...+|||||||+|+|+|++|++||+++|+++||+||+|+ ++++|+.|.++|.+||++|+++|||||++|++|.||
T Consensus 19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 4556678899999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCceEEEEEeecCCCcccccc---------------------CCCCcccccC-CCChhHhHhhhhhc
Q 006018 87 LNELVKILESKNKYGQIVVPVFYLVDPSDAGYCP---------------------SLGWMGIFDI-PTSESVLIEGNVND 144 (664)
Q Consensus 87 ~~El~~~~~~~~~~~~~v~pv~~~v~p~~vr~~~---------------------~~g~~~~~~~-~~~~~~~~~~~~~~ 144 (664)
++||++|++++ ..|+||||+|+|+|||+|. ++|+. .+. .++|++++++|++.
T Consensus 99 LdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~~~~e~v~~Wr~AL~~va~l~G~~--~~~~~~~e~e~i~~iv~~ 172 (187)
T PLN03194 99 LHELALIMESK----KRVIPIFCDVKPSQLRVVDNGTCPDEEIRRFNWALEEAKYTVGLT--FDSLKGNWSEVVTMASDA 172 (187)
T ss_pred HHHHHHHHHcC----CEEEEEEecCCHHHhhccccCCCCHHHHHHHHHHHHHHhcccccc--CCCCCCCHHHHHHHHHHH
Confidence 99999999874 4699999999999999972 67761 122 27799999999998
Q ss_pred cccccc
Q 006018 145 ISKKLS 150 (664)
Q Consensus 145 ~~~~l~ 150 (664)
|.++|-
T Consensus 173 v~k~l~ 178 (187)
T PLN03194 173 VIKNLI 178 (187)
T ss_pred HHHHHH
Confidence 887764
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4e-36 Score=307.12 Aligned_cols=253 Identities=28% Similarity=0.473 Sum_probs=193.5
Q ss_pred ehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH--hhccCCcceeeccchhh---------hhccc----c
Q 006018 164 VESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN--ISSHFEGSYFMQNIRDE---------SEKVG----G 228 (664)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~---------~~~~~----~ 228 (664)
||.++++|.+.|....++.++|+|+||||+||||||.+++++ +..+|+.++|+...... ....+ .
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999886678999999999999999999999998 88999999998532211 11100 0
Q ss_pred h-----hHHhHHHHHHHhcCceEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHHHhhcCCccccEEEecCCC
Q 006018 229 L-----ANIHLNFERRRLSRMKVLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLLKNHRGSRVGHVFEVKELS 303 (664)
Q Consensus 229 l-----~~~~l~~~~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~~l~~L~ 303 (664)
. .....+.+.+.|.++++||||||||+...|+.+...++.+..|++||||||+..++..... ....+++++|+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~--~~~~~~l~~L~ 158 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGG--TDKVIELEPLS 158 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHS--CEEEEECSS--
T ss_pred cccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence 1 1112568888999999999999999999999888877777789999999999988766541 26789999999
Q ss_pred HHHHHHHHHHhhhCCC-CCCccHHHHHHHHHHHhcCCchhHHHHhhhcCCC-CHHHHHHHHHHhhcCC------CCcccc
Q 006018 304 YNDSLTLFSRNAFGQN-HPAAGFLELSNIVIKYANGVPLALQVLGSYLKGM-SEEEWESAVNKLKRMP------HMDIQK 375 (664)
Q Consensus 304 ~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~~~-~~~~w~~~l~~l~~~~------~~~i~~ 375 (664)
.+||++||.+.++... ...+...+.+++|++.|+|+||||+++|++++.+ +..+|+..++++.... ...+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999997654 2334456789999999999999999999999433 6788999888765443 355888
Q ss_pred eeeeecCCCChhhhhhhhhcccccCC--CCHHHHHHHHHHcCCcc
Q 006018 376 VLKVSYDGLDDEEQNIFLDTACFFKG--NDQYLVMNFLDACRFSA 418 (664)
Q Consensus 376 ~l~~sy~~L~~~~k~~~l~la~f~~~--~~~~~~~~~~~~~~~~~ 418 (664)
++.+||+.|+++.|.||+++|+||.+ ++...+..+|.++++..
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 99999999999999999999999998 45888999998876543
No 5
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.77 E-value=1e-19 Score=164.12 Aligned_cols=103 Identities=41% Similarity=0.642 Sum_probs=92.0
Q ss_pred EEEeccccccccchHHHHHHHHhhC--CCceeecC-CcCCCCcccHHHHHhhhcCcEEEEEecCCcccchhhHHHHHHHH
Q 006018 18 VFLSFRGKDVRHNFVSHLNAALCRE--KIETFIDD-KLNRGNEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKIL 94 (664)
Q Consensus 18 vFis~~~~d~~~~f~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~ 94 (664)
|||||++.|.+..|+++|..+|++. |+++|+++ |+.+|..+.+++.++|++|+++|+|+|++|++|+||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444667999999999999 99999999 99999999999999999999999999999999999999999999
Q ss_pred HhhhhcC--ceEEEEEeecCCCccc-ccc
Q 006018 95 ESKNKYG--QIVVPVFYLVDPSDAG-YCP 120 (664)
Q Consensus 95 ~~~~~~~--~~v~pv~~~v~p~~vr-~~~ 120 (664)
++....+ ..|+|++|++.+++++ .+.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~ 109 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQS 109 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhh
Confidence 9976654 7999999999999998 454
No 6
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.72 E-value=1.6e-17 Score=150.20 Aligned_cols=105 Identities=45% Similarity=0.725 Sum_probs=89.8
Q ss_pred cceEEEeccc-cccccchHHHHHHHHhhCCCceeecCCcCCCCcccHHHHHhhhcCcEEEEEecCCcccchhhHHHHHHH
Q 006018 15 KHDVFLSFRG-KDVRHNFVSHLNAALCREKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKI 93 (664)
Q Consensus 15 ~~dvFis~~~-~d~~~~f~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~ 93 (664)
+|||||||++ +|..+.|+.+|...|...|+.+|.|+....|.... +|.++|++|+++|+|+|++|+.|.||..|+..+
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~-~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a 79 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA 79 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHH-HHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence 5999999999 56668899999999999999999998444333333 999999999999999999999999999999999
Q ss_pred HHhhhh-cCceEEEEEeecCCCcccccc
Q 006018 94 LESKNK-YGQIVVPVFYLVDPSDAGYCP 120 (664)
Q Consensus 94 ~~~~~~-~~~~v~pv~~~v~p~~vr~~~ 120 (664)
..+... ....|+||+++..|+++..+.
T Consensus 80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~ 107 (140)
T smart00255 80 LENALEEGGLRVIPIFYEVIPSDVRKQP 107 (140)
T ss_pred HHHHHHcCCCeEEEEEEecChHHHHhcc
Confidence 988654 667999999998886665543
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=1.7e-17 Score=145.06 Aligned_cols=172 Identities=27% Similarity=0.342 Sum_probs=147.4
Q ss_pred CccCCCccCcCcccEEEcCCCCCCcccccccc--cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCC
Q 006018 479 NTSLPTGINLDSLKELYLGGCSNLKRFPEISC--NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNL 556 (664)
Q Consensus 479 ~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l 556 (664)
...+|..+++.++..|.+++|+.....|..-. +|+.|++.+|.|+++|.+++.+++|+.|++.- +.+..+|..|+.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCC
Confidence 34567778889999999999986554444333 89999999999999999999999999999996 6788899999999
Q ss_pred CCCCEEeeeCCCCC-CccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCC
Q 006018 557 KSLRRLNLSGCLKL-EKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCT 635 (664)
Q Consensus 557 ~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~ 635 (664)
+.|+.|+|.+|+.. ..+|..|-.|+.|+-|+|+.|.+..+|+.+++|++|+.|.+..|.+ -++|. .++.++
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl-l~lpk-------eig~lt 173 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL-LSLPK-------EIGDLT 173 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-hhCcH-------HHHHHH
Confidence 99999999998754 3688889999999999999999999999999999999999999654 56777 688899
Q ss_pred CCccccCCCcccccCCCCCceEEc
Q 006018 636 SLKTLSNSSTLLTRSSKHWDIFNF 659 (664)
Q Consensus 636 ~L~~L~ls~N~l~~~~~~~~~~~~ 659 (664)
.|+.|.+.+|+++...|....+.+
T Consensus 174 ~lrelhiqgnrl~vlppel~~l~l 197 (264)
T KOG0617|consen 174 RLRELHIQGNRLTVLPPELANLDL 197 (264)
T ss_pred HHHHHhcccceeeecChhhhhhhh
Confidence 999999999999988887655443
No 8
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.58 E-value=1.3e-15 Score=129.16 Aligned_cols=87 Identities=32% Similarity=0.542 Sum_probs=75.1
Q ss_pred EEEeccccccccchHHHHHHHHhhCCCceeecCCcCCCCcccHHHHHhhhcCcEEEEEecCCcccchhhHHHHHHHHHhh
Q 006018 18 VFLSFRGKDVRHNFVSHLNAALCREKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKILESK 97 (664)
Q Consensus 18 vFis~~~~d~~~~f~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~~~~~ 97 (664)
|||||+++| +.|+++|.+.|+++|+++|+|.++.+|+.+.+.|.++|++|+.+|+++|++|..|.||..|+..+.
T Consensus 1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~--- 75 (102)
T PF13676_consen 1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW--- 75 (102)
T ss_dssp EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence 899999999 468999999999999999999999999999999999999999999999999999999999998873
Q ss_pred hhcCceEEEEEee
Q 006018 98 NKYGQIVVPVFYL 110 (664)
Q Consensus 98 ~~~~~~v~pv~~~ 110 (664)
..+..|+||..+
T Consensus 76 -~~~~~iipv~~~ 87 (102)
T PF13676_consen 76 -KRGKPIIPVRLD 87 (102)
T ss_dssp -CTSESEEEEECS
T ss_pred -HCCCEEEEEEEC
Confidence 345579999754
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=5.8e-15 Score=176.35 Aligned_cols=160 Identities=26% Similarity=0.297 Sum_probs=85.3
Q ss_pred cCcccEEEcCCCCCCcccccccc---ccccccccccccc-ccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEe
Q 006018 488 LDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIE-ELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLN 563 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 563 (664)
+++|++|++++|...+.+|..+. +|+.|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 44455555555544444443322 4455555555543 4444555555555555555544444555555555555555
Q ss_pred eeCCCCCCccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccC
Q 006018 564 LSGCLKLEKLPEEIGNLESLEYLNLAEKDFE-KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSN 642 (664)
Q Consensus 564 L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~l 642 (664)
|++|.+.+.+|..++++++|++|++++|.+. .+|..+.++++|+.|++++|++.+.+|. .+.++++|+.|++
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-------~l~~l~~L~~L~L 291 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-------SIFSLQKLISLDL 291 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-------hHhhccCcCEEEC
Confidence 5555544455555555555555555555544 3455555555555555555555444444 4555667777777
Q ss_pred CCcccccCCCCC
Q 006018 643 SSTLLTRSSKHW 654 (664)
Q Consensus 643 s~N~l~~~~~~~ 654 (664)
++|.+++..|.+
T Consensus 292 s~n~l~~~~p~~ 303 (968)
T PLN00113 292 SDNSLSGEIPEL 303 (968)
T ss_pred cCCeeccCCChh
Confidence 777777665543
No 10
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.54 E-value=1.3e-14 Score=173.35 Aligned_cols=166 Identities=27% Similarity=0.351 Sum_probs=141.1
Q ss_pred cCCCcc-CcCcccEEEcCCCCCCcccccccc---ccccccccccccc-ccccccCCCCCCcEEeecCCCCCCccccccCC
Q 006018 481 SLPTGI-NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIE-ELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCN 555 (664)
Q Consensus 481 ~lp~~~-~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 555 (664)
.+|..+ .+++|+.|++++|...+.+|..+. +|+.|++++|.+. .+|..++++++|++|++++|.....+|..+.+
T Consensus 155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 345544 488999999999987777777554 7888999998886 67888899999999999998877788888999
Q ss_pred CCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCC
Q 006018 556 LKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFE-KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHC 634 (664)
Q Consensus 556 l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~ 634 (664)
+++|++|++++|.+.+.+|..++++++|++|++++|.+. .+|..+.++++|+.|++++|.+.+.+|. .+..+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-------~~~~l 307 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-------LVIQL 307 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-------hHcCC
Confidence 999999999999888888999999999999999999887 6788899999999999999988888887 56788
Q ss_pred CCCccccCCCcccccCCCC
Q 006018 635 TSLKTLSNSSTLLTRSSKH 653 (664)
Q Consensus 635 ~~L~~L~ls~N~l~~~~~~ 653 (664)
++|+.|++++|.+++..|.
T Consensus 308 ~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred CCCcEEECCCCccCCcCCh
Confidence 9999999999998876654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.48 E-value=2.5e-13 Score=163.02 Aligned_cols=187 Identities=36% Similarity=0.525 Sum_probs=125.8
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCcccccccccccccccccccccccccccC---------------------------
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEISCNIEDLDLKETAIEELPSSIG--------------------------- 530 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~~~i~~lp~~~~--------------------------- 530 (664)
....+|..+++++|+.|++++|..++.+|....+|+.|++++|.++.+|..+.
T Consensus 693 ~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 693 NLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchh
Confidence 34467777788889999999988777777766677777777777666554320
Q ss_pred ---CCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCcccccc--------------------CCCCCCCEEE
Q 006018 531 ---NLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEI--------------------GNLESLEYLN 587 (664)
Q Consensus 531 ---~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l--------------------~~l~~L~~L~ 587 (664)
..++|+.|++++|..+..+|..++++++|+.|++++|..++.+|..+ ....+|+.|+
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~ 852 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLN 852 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeE
Confidence 01244455555555555555555555555555555555444444322 1124677888
Q ss_pred ccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCC----CEEeeeCCCCCccccCCCccc---------ccCCCCC
Q 006018 588 LAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCG----SSIHARHCTSLKTLSNSSTLL---------TRSSKHW 654 (664)
Q Consensus 588 l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~----~~l~~~~~~~L~~L~ls~N~l---------~~~~~~~ 654 (664)
|++|.++.+|.++..+++|+.|+|++|+.+..+|..+.. ..+.+.+|++|+.+.+.+++. ....|..
T Consensus 853 Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~ 932 (1153)
T PLN03210 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPST 932 (1153)
T ss_pred CCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCch
Confidence 888889999999999999999999999999988874432 667888899888776654322 1234555
Q ss_pred ceEEccCCCC
Q 006018 655 DIFNFSNCSN 664 (664)
Q Consensus 655 ~~~~~~~c~~ 664 (664)
..+.+.||.+
T Consensus 933 ~~l~f~nC~~ 942 (1153)
T PLN03210 933 VCINFINCFN 942 (1153)
T ss_pred hccccccccC
Confidence 5667888864
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.38 E-value=9.4e-15 Score=128.05 Aligned_cols=144 Identities=28% Similarity=0.463 Sum_probs=126.1
Q ss_pred cccCccCCCccC-cCcccEEEcCCCCCCcccccccc---cccccccccccccccccccCCCCCCcEEeecCCCCCC-ccc
Q 006018 476 LNENTSLPTGIN-LDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLK-SVS 550 (664)
Q Consensus 476 ~~~~~~lp~~~~-l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~-~lp 550 (664)
.++.+.+|+.+. +.+|+.|++++|+ +..+|..+. +|+.|++.-|.+..+|..|+.++.|+.|||++|+.-+ .+|
T Consensus 42 HNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lp 120 (264)
T KOG0617|consen 42 HNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLP 120 (264)
T ss_pred cCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCC
Confidence 456667888874 9999999999986 566776554 7888999999999999999999999999999977554 589
Q ss_pred cccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCC
Q 006018 551 SRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 551 ~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 622 (664)
..|..+..|+.|+|+.|. .+.+|..++++++||.|.++.|.+-++|..++.|+.|+.|.+.+|. ++.+|.
T Consensus 121 gnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~vlpp 190 (264)
T KOG0617|consen 121 GNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVLPP 190 (264)
T ss_pred cchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eeecCh
Confidence 999999999999999988 6889999999999999999999999999999999999999999965 455554
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.34 E-value=1.2e-13 Score=143.19 Aligned_cols=140 Identities=26% Similarity=0.362 Sum_probs=90.6
Q ss_pred cccCccCCCccC-cCcccEEEcCCCCCCcccccccc----cccccccccccccccccccCCCCCCcEEeecCCCCCCccc
Q 006018 476 LNENTSLPTGIN-LDSLKELYLGGCSNLKRFPEISC----NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVS 550 (664)
Q Consensus 476 ~~~~~~lp~~~~-l~~L~~L~l~~~~~~~~~p~~~~----~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp 550 (664)
.++.+..|.... -+++-+|+||+|+ +..+|...+ .|-.|||++|.++.+|+.+..+.+|++|+|++|.....--
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQL 190 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQL 190 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHH
Confidence 345556666653 5667778888775 556666554 3456788888888888887788888888887764321111
Q ss_pred cccCCCCCCCEEeeeCCC-CCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCC
Q 006018 551 SRLCNLKSLRRLNLSGCL-KLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKR 616 (664)
Q Consensus 551 ~~~~~l~~L~~L~L~~~~-~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~ 616 (664)
..+..+++|++|.+++.. -+..+|.++..|.+|..+|+|+|++..+|.++.++++|+.|+||+|++
T Consensus 191 rQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 191 RQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 122245556666665543 234567777777777777777777777777777777777777777654
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.34 E-value=8.7e-14 Score=144.27 Aligned_cols=160 Identities=29% Similarity=0.380 Sum_probs=126.6
Q ss_pred CccCCCc-cCcCcccEEEcCCCCCCcccccccc---cccccccccccccccccc-cCCCCCCcEEeecCCCCCCcccccc
Q 006018 479 NTSLPTG-INLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSS-IGNLSRLVDLDLTNCSGLKSVSSRL 553 (664)
Q Consensus 479 ~~~lp~~-~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~ 553 (664)
+..+|+. +.+..|..||||+|+ +...|..+. ++-.|+|++|+|+.+|.+ +-+++.|-+|||++ +.+..+|+.+
T Consensus 92 nsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQI 169 (1255)
T ss_pred cCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHH
Confidence 3456665 469999999999997 667777665 788999999999999986 45899999999996 6789999999
Q ss_pred CCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCc--cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEee
Q 006018 554 CNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFE--KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHA 631 (664)
Q Consensus 554 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~ 631 (664)
..|.+|++|.|++|.....--..+..|++|+.|.+++++=+ .+|.++..|.+|..+++|.|+ +..+|+ .+
T Consensus 170 RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPe-------cl 241 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPE-------CL 241 (1255)
T ss_pred HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchH-------HH
Confidence 99999999999999854333345668899999999988654 789999999999999999864 444554 34
Q ss_pred eCCCCCccccCCCcccc
Q 006018 632 RHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 632 ~~~~~L~~L~ls~N~l~ 648 (664)
-++.+|+.|+||+|.|+
T Consensus 242 y~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hhhhhhheeccCcCcee
Confidence 44555666666666554
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.32 E-value=2.6e-11 Score=144.14 Aligned_cols=277 Identities=13% Similarity=0.144 Sum_probs=168.7
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchh--------------h
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRD--------------E 222 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~--------------~ 222 (664)
....+|-|+..++.+... ...+++.|.|++|.||||++..+.++. +.+.|+. +.. .
T Consensus 12 ~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~d~~~~~f~~~l~~~ 81 (903)
T PRK04841 12 RLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDESDNQPERFASYLIAA 81 (903)
T ss_pred CccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCcccCCHHHHHHHHHHH
Confidence 667889999777766532 357899999999999999999988642 3566763 110 0
Q ss_pred hhccc-c----hh----H---H----hHHHHHHHhc--CceEEEEEecCCCHH---HHHHHhccCCCCCCCcEEEEEeCC
Q 006018 223 SEKVG-G----LA----N---I----HLNFERRRLS--RMKVLIVFYDLTDLK---QIDLLIGRLDGFVPGSRVIITTRD 281 (664)
Q Consensus 223 ~~~~~-~----l~----~---~----~l~~~~~~L~--~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IliTtR~ 281 (664)
..... . .. . . .+..+...+. +.+++|||||+...+ ..+.+...+....++.++|||||.
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~ 161 (903)
T PRK04841 82 LQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRN 161 (903)
T ss_pred HHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 00000 0 00 0 0 0112222332 578999999996532 122232223334566789999997
Q ss_pred HHHH--HhhcCCccccEEEec----CCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcCCCCH
Q 006018 282 VQLL--KNHRGSRVGHVFEVK----ELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLKGMSE 355 (664)
Q Consensus 282 ~~~~--~~~~~~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~~~~~ 355 (664)
..-. ..... .....++. +|+.+|+.+||...... .-..+.+.++.+.++|.|+++..++..++....
T Consensus 162 ~~~~~~~~l~~--~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-----~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 162 LPPLGIANLRV--RDQLLEIGSQQLAFDHQEAQQFFDQRLSS-----PIEAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred CCCCchHhHHh--cCcceecCHHhCCCCHHHHHHHHHhccCC-----CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 4211 11110 12345565 89999999999765421 112355778999999999999988877643221
Q ss_pred HHHHHHHHHhhcCCCCccccee-eeecCCCChhhhhhhhhcccccCCCCHHHHHHHHHHcCCccccccceecccceeee-
Q 006018 356 EEWESAVNKLKRMPHMDIQKVL-KVSYDGLDDEEQNIFLDTACFFKGNDQYLVMNFLDACRFSAKIGISRLVGKSLVTI- 433 (664)
Q Consensus 356 ~~w~~~l~~l~~~~~~~i~~~l-~~sy~~L~~~~k~~~l~la~f~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~li~~- 433 (664)
. .......+...+...+...+ ...++.||++.+.+++.+|+++ .++......+.. .......+..|.+.+++..
T Consensus 235 ~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~~ 310 (903)
T PRK04841 235 S-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQR 310 (903)
T ss_pred c-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeEe
Confidence 0 00111112111222343332 2237899999999999999986 556555544442 2234566888999998543
Q ss_pred e---CCeEEechHHHHHHhHHhhc
Q 006018 434 S---NNKITMHDLLQEMGGEIVRQ 454 (664)
Q Consensus 434 ~---~~~~~mHdlv~~~~~~i~~~ 454 (664)
. ...|..|++++++.+.....
T Consensus 311 ~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 311 MDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred ecCCCCEEehhHHHHHHHHHHHHh
Confidence 2 23789999999999876643
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.20 E-value=4.2e-13 Score=132.77 Aligned_cols=173 Identities=28% Similarity=0.364 Sum_probs=130.0
Q ss_pred ccccccccceeccccCccCCCcc-CcCcccEEEcCCCCCCcccccccc--cccccccccccccccccccCCCCCCcEEee
Q 006018 464 SRLWHPEDIYQVLNENTSLPTGI-NLDSLKELYLGGCSNLKRFPEISC--NIEDLDLKETAIEELPSSIGNLSRLVDLDL 540 (664)
Q Consensus 464 ~~l~~~~~~~~~~~~~~~lp~~~-~l~~L~~L~l~~~~~~~~~p~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l 540 (664)
.++.+.++.....++..++|+.+ .+.+|..|++.+|......|+... .|++|+...|.++.+|+.++.+.+|..|+|
T Consensus 134 ~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 134 GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYL 213 (565)
T ss_pred HHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHh
Confidence 34444455555566677777765 477777888888764443333332 677888888888888888888888888888
Q ss_pred cCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccC-CCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCc
Q 006018 541 TNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIG-NLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQS 619 (664)
Q Consensus 541 ~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~-~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~ 619 (664)
.. +.+..+| .|.++..|+.|+++.|. ++.+|...+ ++.+|..|||+.|+++++|..+.-|++|++||+|+|. +..
T Consensus 214 ~~-Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~ 289 (565)
T KOG0472|consen 214 RR-NKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISS 289 (565)
T ss_pred hh-cccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-ccc
Confidence 87 4566777 78888888888887776 677777665 7888888999999888888888888888899988854 455
Q ss_pred CCCCCCCCEEeeeCCCCCccccCCCcccc
Q 006018 620 LPELPCGSSIHARHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 620 lp~l~~~~~l~~~~~~~L~~L~ls~N~l~ 648 (664)
+|. +++++ .|+.|.+.+|++.
T Consensus 290 Lp~-------sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 290 LPY-------SLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred CCc-------ccccc-eeeehhhcCCchH
Confidence 666 57777 7888888888864
No 17
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.18 E-value=1.3e-10 Score=114.72 Aligned_cols=181 Identities=18% Similarity=0.148 Sum_probs=96.6
Q ss_pred ceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccch--------hh----------
Q 006018 161 LVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIR--------DE---------- 222 (664)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~--------~~---------- 222 (664)
|+||+.++++|.+.+..+ ..+.+.|+|+.|+|||+|++++.+.....-..++|+.... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 799999999999999643 3568999999999999999999998644222333322100 00
Q ss_pred ---hh-ccc--ch----------hHHhHHHHHHHhc--CceEEEEEecCCCHH-----------HHHHHhccCCCCCCCc
Q 006018 223 ---SE-KVG--GL----------ANIHLNFERRRLS--RMKVLIVFYDLTDLK-----------QIDLLIGRLDGFVPGS 273 (664)
Q Consensus 223 ---~~-~~~--~l----------~~~~l~~~~~~L~--~~~~LlVlDdv~~~~-----------~~~~l~~~~~~~~~gs 273 (664)
.. ... .. ....+..+.+.+. +++++||+||++... .+..+...... ....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNV 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCc
Confidence 00 000 00 0111333434443 245999999986544 12222222222 2333
Q ss_pred EEEEEeCCHHHHHhhc-----CCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHH
Q 006018 274 RVIITTRDVQLLKNHR-----GSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQV 345 (664)
Q Consensus 274 ~IliTtR~~~~~~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 345 (664)
.+++++....+..... .......+.+++|+.+++++++...+-.. ..-+...+..++|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 4555555555543300 00123449999999999999998865332 11122356678999999999988764
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.18 E-value=8.5e-12 Score=129.05 Aligned_cols=156 Identities=24% Similarity=0.213 Sum_probs=107.0
Q ss_pred CcccEEEcCCCCCCcccccc---ccccccccccccccccccc-ccCCCCCCcEEeecCCCCCCcc-ccccCCCCCCCEEe
Q 006018 489 DSLKELYLGGCSNLKRFPEI---SCNIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSV-SSRLCNLKSLRRLN 563 (664)
Q Consensus 489 ~~L~~L~l~~~~~~~~~p~~---~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~ 563 (664)
.+++.|+|++|+....-... +.+|..|.|+.|.++.+|. .|.+|++|+.|+|..|. +... --.|.+|++|+.|.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhh
Confidence 56788888888743221111 1267778888888888886 45568888888888754 3332 34577788888888
Q ss_pred eeCCCCCCccccccCCCCCCCEEEccCCCCcccc-ccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccC
Q 006018 564 LSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIP-SSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSN 642 (664)
Q Consensus 564 L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~l 642 (664)
|..|.+...-...|..|.++++|+|+.|+++.+. .++.+|+.|+.|+||+|.+...-+. .-+.|++|+.|+|
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d-------~WsftqkL~~LdL 324 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID-------SWSFTQKLKELDL 324 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc-------hhhhcccceeEec
Confidence 8887754444445677778888888888887664 3567788888888888766555554 3456777888888
Q ss_pred CCcccccCCC
Q 006018 643 SSTLLTRSSK 652 (664)
Q Consensus 643 s~N~l~~~~~ 652 (664)
|+|+|++-.+
T Consensus 325 s~N~i~~l~~ 334 (873)
T KOG4194|consen 325 SSNRITRLDE 334 (873)
T ss_pred cccccccCCh
Confidence 8887775443
No 19
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.18 E-value=1.5e-10 Score=119.12 Aligned_cols=250 Identities=18% Similarity=0.172 Sum_probs=146.6
Q ss_pred CCceeehhhHHHHHhhhcCC---CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHH
Q 006018 159 DQLVGVESIIKEIESQLLSG---STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLN 235 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~ 235 (664)
.+|||++..+++|..++... ......+.++|++|+|||+||+.+++.....+... . .. ..... .++.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~---~-~~-~~~~~-----~~l~ 73 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKIT---S-GP-ALEKP-----GDLA 73 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEe---c-cc-hhcCc-----hhHH
Confidence 57999999999998888531 23355688999999999999999999865432111 0 00 00000 0111
Q ss_pred HHHHHhcCceEEEEEecCCCHH--HHHHHhccCC-------------------CCCCCcEEEEEeCCHHHHHhhcCCccc
Q 006018 236 FERRRLSRMKVLIVFYDLTDLK--QIDLLIGRLD-------------------GFVPGSRVIITTRDVQLLKNHRGSRVG 294 (664)
Q Consensus 236 ~~~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~-------------------~~~~gs~IliTtR~~~~~~~~~~~~~~ 294 (664)
.....+ +...++++|+++... ..+.+...+. ...+.+-|..||+...+...... ...
T Consensus 74 ~~l~~~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s-R~~ 151 (305)
T TIGR00635 74 AILTNL-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD-RFG 151 (305)
T ss_pred HHHHhc-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh-hcc
Confidence 111111 234577888876432 2222221110 11224455567775433222110 123
Q ss_pred cEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcC------C---CCHHHHHHHHHHh
Q 006018 295 HVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLK------G---MSEEEWESAVNKL 365 (664)
Q Consensus 295 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~------~---~~~~~w~~~l~~l 365 (664)
..+.+++++.++..+++.+.+.... ..-..+....|++.|+|.|-.+..++..+. + .+.+.....+..
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~- 228 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEM- 228 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH-
Confidence 5689999999999999998874322 222346678899999999977655544321 1 133333333322
Q ss_pred hcCCCCcccceeeeecCCCChhhhhhhh-hcccccCC-CCHHHHHHHHHHcCCccccccc-eecccceeeee
Q 006018 366 KRMPHMDIQKVLKVSYDGLDDEEQNIFL-DTACFFKG-NDQYLVMNFLDACRFSAKIGIS-RLVGKSLVTIS 434 (664)
Q Consensus 366 ~~~~~~~i~~~l~~sy~~L~~~~k~~~l-~la~f~~~-~~~~~~~~~~~~~~~~~~~~l~-~L~~~~li~~~ 434 (664)
+...|..+++.++..+. .++.+..+ ...+.+...+.......+..++ .|++++||...
T Consensus 229 -----------l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 229 -----------LMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred -----------hCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 45567889988887776 33444333 5556666666555555666677 69999999744
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.17 E-value=5.3e-13 Score=132.06 Aligned_cols=167 Identities=26% Similarity=0.347 Sum_probs=135.3
Q ss_pred ccCccCCCcc-CcCcccEEEcCCCCCCcccccccc---cccccccccccccccccccCCCCCCcEEeecCCCCCCccccc
Q 006018 477 NENTSLPTGI-NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSR 552 (664)
Q Consensus 477 ~~~~~lp~~~-~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 552 (664)
+....+|+.+ .+..+..|+..+|+. ...|..+. ++..|++.+|.++++|+..-+++.|+.||... +.++.+|+.
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i-~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~ 201 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQI-SSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE 201 (565)
T ss_pred cceeecCchHHHHhhhhhhhcccccc-ccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh
Confidence 3444566665 377777788777764 44555444 67778888999999988777799999999887 578889999
Q ss_pred cCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccccccc-CCCCCCEEeecCCCCCCcCCCCCCCCEEee
Q 006018 553 LCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMK-QLSKLSDLRLQNCKRLQSLPELPCGSSIHA 631 (664)
Q Consensus 553 ~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~ 631 (664)
++.+.+|..|+|..|. +..+| .|+++..|..|+++.|.|+.+|..+. +|.+|..|||.+| .++++|. .+
T Consensus 202 lg~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pd-------e~ 271 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD-------EI 271 (565)
T ss_pred hcchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCch-------HH
Confidence 9999999999999988 66778 78899999999999999999998875 8999999999995 4678888 56
Q ss_pred eCCCCCccccCCCcccccCCCCCc
Q 006018 632 RHCTSLKTLSNSSTLLTRSSKHWD 655 (664)
Q Consensus 632 ~~~~~L~~L~ls~N~l~~~~~~~~ 655 (664)
--+.+|+.||+|+|.|++-.+...
T Consensus 272 clLrsL~rLDlSNN~is~Lp~sLg 295 (565)
T KOG0472|consen 272 CLLRSLERLDLSNNDISSLPYSLG 295 (565)
T ss_pred HHhhhhhhhcccCCccccCCcccc
Confidence 667899999999999998766653
No 21
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.16 E-value=3.3e-10 Score=117.51 Aligned_cols=252 Identities=18% Similarity=0.173 Sum_probs=151.3
Q ss_pred CCCCceeehhhHHHHHhhhcC---CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESIIKEIESQLLS---GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
...+|+|++..++.+...+.. .....+.+.|+|++|+|||+||+.+++.....+.. .. .. .... ..+
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~---~~-~~-~~~~-----~~~ 92 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRI---TS-GP-ALEK-----PGD 92 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEE---Ee-cc-cccC-----hHH
Confidence 667899999999999887753 22335678899999999999999999986543211 10 00 0000 011
Q ss_pred HHHHHHHhcCceEEEEEecCCCHH--HHHHHhccCC-------------------CCCCCcEEEEEeCCHHHHHhhcCCc
Q 006018 234 LNFERRRLSRMKVLIVFYDLTDLK--QIDLLIGRLD-------------------GFVPGSRVIITTRDVQLLKNHRGSR 292 (664)
Q Consensus 234 l~~~~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~-------------------~~~~gs~IliTtR~~~~~~~~~~~~ 292 (664)
+..+...+ +...+|++|+++... ..+.+...+. ...+.+-|..|+|...+...... .
T Consensus 93 l~~~l~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s-R 170 (328)
T PRK00080 93 LAAILTNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD-R 170 (328)
T ss_pred HHHHHHhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH-h
Confidence 22222223 245678889986432 2222211110 01223445567774433222110 0
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcC------C---CCHHHHHHHHH
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLK------G---MSEEEWESAVN 363 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~------~---~~~~~w~~~l~ 363 (664)
....++++.++.++..+++.+.+.... ..-..+.+..|++.|+|.|-.+..+...+. + .+.+.-...+
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l- 247 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKAL- 247 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH-
Confidence 235689999999999999998874322 223346788999999999976554444321 0 1222222222
Q ss_pred HhhcCCCCcccceeeeecCCCChhhhhhhh-hcccccCC-CCHHHHHHHHHHcCCccccccc-eecccceeeee
Q 006018 364 KLKRMPHMDIQKVLKVSYDGLDDEEQNIFL-DTACFFKG-NDQYLVMNFLDACRFSAKIGIS-RLVGKSLVTIS 434 (664)
Q Consensus 364 ~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l-~la~f~~~-~~~~~~~~~~~~~~~~~~~~l~-~L~~~~li~~~ 434 (664)
..+...+..|++..+..+. .+..|..+ ...+.+...+.......+..++ .|++.+||...
T Consensus 248 -----------~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 248 -----------DMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred -----------HHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 2346677889988888886 45555444 5666677776555555666677 89999999754
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=1.3e-10 Score=131.03 Aligned_cols=126 Identities=24% Similarity=0.391 Sum_probs=70.3
Q ss_pred CccCCCccCcCcccEEEcCCCCCCcccccccc-cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCC
Q 006018 479 NTSLPTGINLDSLKELYLGGCSNLKRFPEISC-NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLK 557 (664)
Q Consensus 479 ~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 557 (664)
..++|..+ ..+|+.|++++|. +..+|..+. +|+.|+|++|.+..+|..+. .+|+.|++++| .+..+|..+. +
T Consensus 211 LtsLP~~l-~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~ 283 (754)
T PRK15370 211 LKSLPENL-QGNIKTLYANSNQ-LTSIPATLPDTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLPENLP--E 283 (754)
T ss_pred CCcCChhh-ccCCCEEECCCCc-cccCChhhhccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCccccccC--C
Confidence 33444433 2456666666654 334444333 56666666666666665543 35666666643 3445554443 4
Q ss_pred CCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCC
Q 006018 558 SLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKR 616 (664)
Q Consensus 558 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~ 616 (664)
+|+.|++++|. +..+|..+. .+|+.|++++|.++.+|..+. ++|+.|++++|.+
T Consensus 284 sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L 337 (754)
T PRK15370 284 ELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENAL 337 (754)
T ss_pred CCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCcc
Confidence 66666666665 334554432 356666666666666664432 4667777776654
No 23
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.09 E-value=8.6e-11 Score=121.77 Aligned_cols=136 Identities=23% Similarity=0.216 Sum_probs=62.6
Q ss_pred ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEcc
Q 006018 511 NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLA 589 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 589 (664)
++++|+|++|.|+.+-. .|.++.+|.+|.|+.|......+..|.+|++|+.|+|..|.+-..---.|.+|++|+.|.|.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq 253 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ 253 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh
Confidence 44445555544444432 34444445555554432222222334445555555555444211112234445555555555
Q ss_pred CCCCccccc-cccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCCC
Q 006018 590 EKDFEKIPS-SMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSKH 653 (664)
Q Consensus 590 ~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~~ 653 (664)
.|.+..+.. .|..|.++++|+|+.|+....-.. -+-++++|+.|++|+|.|.+..+.
T Consensus 254 rN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g-------~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 254 RNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG-------WLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred hcCcccccCcceeeecccceeecccchhhhhhcc-------cccccchhhhhccchhhhheeecc
Confidence 555554433 234455555555555433221111 244566777777777777655444
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.08 E-value=1.9e-10 Score=128.81 Aligned_cols=146 Identities=21% Similarity=0.216 Sum_probs=78.0
Q ss_pred cCcccEEEcCCCCCCcccccccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCC
Q 006018 488 LDSLKELYLGGCSNLKRFPEISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGC 567 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~ 567 (664)
+++|+.|++++|.+ ..+|....+|+.|++++|.++.+|.. ..+|+.|+|++| .+..+|.. ..+|+.|++++|
T Consensus 301 p~~L~~LdLS~N~L-~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N-~Ls~LP~l---p~~L~~L~Ls~N 372 (788)
T PRK15387 301 PPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLPTL---PSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN 372 (788)
T ss_pred ccccceeECCCCcc-ccCCCCcccccccccccCcccccccc---ccccceEecCCC-ccCCCCCC---Ccccceehhhcc
Confidence 35677777777653 34555545666666666666666541 235666666653 33444432 233444444444
Q ss_pred CCCCccccccC-----------------CCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEe
Q 006018 568 LKLEKLPEEIG-----------------NLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIH 630 (664)
Q Consensus 568 ~~~~~~p~~l~-----------------~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~ 630 (664)
. +..+|.... ...+|+.|++++|.++.+|... .+|+.|++++|++ ..+|. .
T Consensus 373 ~-L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~NqL-t~LP~-------s 440 (788)
T PRK15387 373 R-LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLP---SGLLSLSVYRNQL-TRLPE-------S 440 (788)
T ss_pred c-cccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCcch---hhhhhhhhccCcc-cccCh-------H
Confidence 3 223332211 1134445555555555444321 2344455555433 23444 4
Q ss_pred eeCCCCCccccCCCcccccCCCC
Q 006018 631 ARHCTSLKTLSNSSTLLTRSSKH 653 (664)
Q Consensus 631 ~~~~~~L~~L~ls~N~l~~~~~~ 653 (664)
+..+++|+.|++++|+|++..+.
T Consensus 441 l~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 441 LIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred HhhccCCCeEECCCCCCCchHHH
Confidence 66788899999999999876544
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.06 E-value=7e-10 Score=124.41 Aligned_cols=30 Identities=17% Similarity=0.229 Sum_probs=15.1
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCC
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNC 543 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 543 (664)
+|+.|++++|.++.+|.. +++|+.|++++|
T Consensus 283 ~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N 312 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPVL---PPGLQELSVSDN 312 (788)
T ss_pred hcCEEECcCCcccccccc---ccccceeECCCC
Confidence 444444444444444431 245666666654
No 26
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.03 E-value=4.1e-10 Score=126.94 Aligned_cols=132 Identities=25% Similarity=0.388 Sum_probs=91.0
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCcccccccc-cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCC
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEISC-NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNL 556 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l 556 (664)
...++|..+ ..+|+.|++++|... .+|..+. +|+.|++++|.++.+|..+. .+|+.|++++| .+..+|..+.
T Consensus 231 ~LtsLP~~l-~~~L~~L~Ls~N~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp-- 303 (754)
T PRK15370 231 QLTSIPATL-PDTIQEMELSINRIT-ELPERLPSALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP-- 303 (754)
T ss_pred ccccCChhh-hccccEEECcCCccC-cCChhHhCCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcccch--
Confidence 344555543 346888888888643 5665444 78888888888888887654 47888888875 4556664433
Q ss_pred CCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCC
Q 006018 557 KSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 557 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 622 (664)
++|+.|++++|. +..+|..+. ++|++|++++|.++.+|..+. ++|+.|++++|++. .+|.
T Consensus 304 ~sL~~L~Ls~N~-Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~ 363 (754)
T PRK15370 304 SGITHLNVQSNS-LTALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPE 363 (754)
T ss_pred hhHHHHHhcCCc-cccCCcccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCCh
Confidence 468888888877 445665443 578888888888888887663 67888888887653 4554
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.01 E-value=1e-08 Score=109.66 Aligned_cols=234 Identities=16% Similarity=0.166 Sum_probs=133.5
Q ss_pred CCCCceeehhhHHHHHhhhcCC--CCcceEEEEecCCCCChHHHHHHHHHHhhccCCc--ceeeccc---------hhhh
Q 006018 157 NKDQLVGVESIIKEIESQLLSG--STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEG--SYFMQNI---------RDES 223 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~---------~~~~ 223 (664)
.++.++||++++++|...+... ......+.|+|++|+|||++++.+++........ .+++... ....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 5678999999999999888432 2334567899999999999999999987654422 2222110 0111
Q ss_pred hccc-------chh-HHhHHHHHHHhc--CceEEEEEecCCCHH------HHHHHhccCCCCCCCcE--EEEEeCCHHHH
Q 006018 224 EKVG-------GLA-NIHLNFERRRLS--RMKVLIVFYDLTDLK------QIDLLIGRLDGFVPGSR--VIITTRDVQLL 285 (664)
Q Consensus 224 ~~~~-------~l~-~~~l~~~~~~L~--~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~--IliTtR~~~~~ 285 (664)
.... +.. ..-++.+.+.+. +++.+||||+++... .+..+...... .++++ +|.++.+..+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchh
Confidence 1100 011 111344555554 456899999998653 34444433222 12333 56666655433
Q ss_pred Hhhc----CCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHH----hcCCchhHHHHhhhc-----CC
Q 006018 286 KNHR----GSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKY----ANGVPLALQVLGSYL-----KG 352 (664)
Q Consensus 286 ~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~----~~glPLal~~~a~~l-----~~ 352 (664)
.... .......+.+++++.++..+++..++-..-.+..-..+..+.+++. .|..+.|+.++-... ++
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 2211 0001346789999999999999877632111111112333444443 455677776654322 12
Q ss_pred ---CCHHHHHHHHHHhhcCCCCcccceeeeecCCCChhhhhhhhhcccc
Q 006018 353 ---MSEEEWESAVNKLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTACF 398 (664)
Q Consensus 353 ---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la~f 398 (664)
.+.+++..+++..... ...-.+..|+.++|.++..++..
T Consensus 267 ~~~I~~~~v~~a~~~~~~~-------~~~~~~~~L~~~~k~~L~ai~~~ 308 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSEIV-------HLSEVLRTLPLHEKLLLRAIVRL 308 (394)
T ss_pred CCCcCHHHHHHHHHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHH
Confidence 3677777777765211 12335778999998888766644
No 28
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.6e-09 Score=108.62 Aligned_cols=172 Identities=23% Similarity=0.356 Sum_probs=106.7
Q ss_pred CCCCceeehhhHHH---HHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESIIKE---IESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
.-+++||.+..+.+ |.+++. ...+....+||++|+||||||+.++......|....-+. .+..+..
T Consensus 22 ~lde~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~---------~gvkdlr 90 (436)
T COG2256 22 SLDEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT---------SGVKDLR 90 (436)
T ss_pred CHHHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---------ccHHHHH
Confidence 45566776655532 444553 245677889999999999999999998777664322111 1111110
Q ss_pred --HH-HHHHHhcCceEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEE--EeCCHHHHHhhcCCccccEEEecCCCHHH
Q 006018 234 --LN-FERRRLSRMKVLIVFYDLT--DLKQIDLLIGRLDGFVPGSRVII--TTRDVQLLKNHRGSRVGHVFEVKELSYND 306 (664)
Q Consensus 234 --l~-~~~~~L~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~Ili--TtR~~~~~~~~~~~~~~~~~~l~~L~~~e 306 (664)
++ .-+....+++.+|++|.|. +..|-+.+++.. ..|.-|+| ||.|+...-.....+...++++++|+.++
T Consensus 91 ~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~d 167 (436)
T COG2256 91 EIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSED 167 (436)
T ss_pred HHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHH
Confidence 11 1233445789999999996 445667776654 56777777 77776442111111246789999999999
Q ss_pred HHHHHHHhhhCCCCC-----CccHHHHHHHHHHHhcCCchh
Q 006018 307 SLTLFSRNAFGQNHP-----AAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 307 a~~Lf~~~a~~~~~~-----~~~~~~~~~~i~~~~~glPLa 342 (664)
-.+++.+-+...... ..-.++..+.+++.++|--.+
T Consensus 168 i~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 168 IKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 999998843221111 112345566788888876543
No 29
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.93 E-value=3.7e-11 Score=130.90 Aligned_cols=171 Identities=29% Similarity=0.362 Sum_probs=110.6
Q ss_pred ccccccccceeccccCccCCCccC-cCcccEEEcCCCCCCcccccccc-----------------------------ccc
Q 006018 464 SRLWHPEDIYQVLNENTSLPTGIN-LDSLKELYLGGCSNLKRFPEISC-----------------------------NIE 513 (664)
Q Consensus 464 ~~l~~~~~~~~~~~~~~~lp~~~~-l~~L~~L~l~~~~~~~~~p~~~~-----------------------------~L~ 513 (664)
.+.|....+....++...+|+... +++|++|+|..|. +..+|+.+. .|+
T Consensus 284 ~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred hhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 344444445555566667787765 8899999998885 455555332 234
Q ss_pred cccccccccc-ccccccCCCCCCcEEeecCCCCCCccc-cccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCC
Q 006018 514 DLDLKETAIE-ELPSSIGNLSRLVDLDLTNCSGLKSVS-SRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEK 591 (664)
Q Consensus 514 ~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 591 (664)
.|++.+|.++ ..-+.+.++.+|+.|+|++ +.+..+| ..+.++..|+.|+||||. +..+|..+.++..|++|...+|
T Consensus 363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCC
Confidence 4455555554 2223355677777777776 3455555 335667777777777776 6677777777777777777777
Q ss_pred CCccccccccCCCCCCEEeecCCCCCC-cCCCCCCCCEEeeeCCCCCccccCCCcc
Q 006018 592 DFEKIPSSMKQLSKLSDLRLQNCKRLQ-SLPELPCGSSIHARHCTSLKTLSNSSTL 646 (664)
Q Consensus 592 ~i~~lp~~i~~L~~L~~L~L~~~~~l~-~lp~l~~~~~l~~~~~~~L~~L~ls~N~ 646 (664)
.+..+| .+..++.|+.+|+|.|++.. .+|.. -..++|+.||+++|.
T Consensus 441 ~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~--------~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 441 QLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEA--------LPSPNLKYLDLSGNT 487 (1081)
T ss_pred ceeech-hhhhcCcceEEecccchhhhhhhhhh--------CCCcccceeeccCCc
Confidence 777777 67777778888877766533 23321 111678888888886
No 30
>PF05729 NACHT: NACHT domain
Probab=98.91 E-value=1.3e-08 Score=94.51 Aligned_cols=133 Identities=21% Similarity=0.296 Sum_probs=80.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCC-----cceeeccchhhhhccc--chhHH----------hHHH-HHH-HhcC
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFE-----GSYFMQNIRDESEKVG--GLANI----------HLNF-ERR-RLSR 243 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~~~~~~~~~~~--~l~~~----------~l~~-~~~-~L~~ 243 (664)
|++.|.|.+|+||||+++.++..+..... ...++...+....... .+.+. .... +.. ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 57899999999999999999998665442 1222222222222111 11111 0111 111 2256
Q ss_pred ceEEEEEecCCCHHH---------HHHHh-ccCCC-CCCCcEEEEEeCCHHHHHhhcCCccccEEEecCCCHHHHHHHHH
Q 006018 244 MKVLIVFYDLTDLKQ---------IDLLI-GRLDG-FVPGSRVIITTRDVQLLKNHRGSRVGHVFEVKELSYNDSLTLFS 312 (664)
Q Consensus 244 ~~~LlVlDdv~~~~~---------~~~l~-~~~~~-~~~gs~IliTtR~~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 312 (664)
+++++|+|++++... +..++ ..+.. ..++++++||+|................+++++|+.++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 799999999975432 11122 22222 35789999999987662211111134689999999999999997
Q ss_pred Hhh
Q 006018 313 RNA 315 (664)
Q Consensus 313 ~~a 315 (664)
++.
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 764
No 31
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.89 E-value=3.7e-10 Score=114.02 Aligned_cols=266 Identities=20% Similarity=0.236 Sum_probs=179.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc-----------chhHH--hHHHHHHHhcCceEE
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG-----------GLANI--HLNFERRRLSRMKVL 247 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~-----------~l~~~--~l~~~~~~L~~~~~L 247 (664)
..+.+.++|.|||||||++-.+.. +...|...+++.+......... ..+.- ..+.+..+..+++.+
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~l 91 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRAL 91 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhHH
Confidence 457899999999999999999999 8888988887765554433221 11111 244667777889999
Q ss_pred EEEecCCCHH-HHHHHhccCCCCCCCcEEEEEeCCHHHHHhhcCCccccEEEecCCCHH-HHHHHHHHhhhCCCC---CC
Q 006018 248 IVFYDLTDLK-QIDLLIGRLDGFVPGSRVIITTRDVQLLKNHRGSRVGHVFEVKELSYN-DSLTLFSRNAFGQNH---PA 322 (664)
Q Consensus 248 lVlDdv~~~~-~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~~---~~ 322 (664)
+|+||.++.. +-..+...+....+.-.|+.|+|+..... ....+.++.|+.. ++.++|...+..... ..
T Consensus 92 lvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~------ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~ 165 (414)
T COG3903 92 LVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA------GEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLT 165 (414)
T ss_pred HHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc------ccccccCCccccCCchhHHHHHHHHHhccceeec
Confidence 9999987653 23333333444455668899999654322 4667888888876 799999877632221 12
Q ss_pred ccHHHHHHHHHHHhcCCchhHHHHhhhcCCCCHHHHHHHHHH----hhcC------CCCcccceeeeecCCCChhhhhhh
Q 006018 323 AGFLELSNIVIKYANGVPLALQVLGSYLKGMSEEEWESAVNK----LKRM------PHMDIQKVLKVSYDGLDDEEQNIF 392 (664)
Q Consensus 323 ~~~~~~~~~i~~~~~glPLal~~~a~~l~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L~~~~k~~~ 392 (664)
.........|.+...|.|++|..+++..+.....+....+.. +... ........+.+||.-|...++-.|
T Consensus 166 ~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~ 245 (414)
T COG3903 166 DDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALF 245 (414)
T ss_pred CCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHh
Confidence 333456778999999999999999999988776665554443 2222 134467789999999999999999
Q ss_pred hhcccccCCCCHHHHHHHHHHcCC-----ccccccceecccceeeeeC----CeEEechHHHHHHhHHhh
Q 006018 393 LDTACFFKGNDQYLVMNFLDACRF-----SAKIGISRLVGKSLVTISN----NKITMHDLLQEMGGEIVR 453 (664)
Q Consensus 393 l~la~f~~~~~~~~~~~~~~~~~~-----~~~~~l~~L~~~~li~~~~----~~~~mHdlv~~~~~~i~~ 453 (664)
-.++.|..+++............+ .....+..+++++++...+ -.++.-+-.+.|+.+...
T Consensus 246 ~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 246 GRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELH 315 (414)
T ss_pred cchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999888877643332221111 2223356788888877652 234445555555554443
No 32
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.86 E-value=3.9e-08 Score=105.17 Aligned_cols=177 Identities=23% Similarity=0.289 Sum_probs=107.9
Q ss_pred CCCCceeehhhHHH---HHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESIIKE---IESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
...++||++..+.+ +..++.. .....+.++|++|+||||||+.+++.....|....... . ....+.. .
T Consensus 10 ~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~---~---~~~~ir~-i 80 (413)
T PRK13342 10 TLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT---S---GVKDLRE-V 80 (413)
T ss_pred CHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc---c---cHHHHHH-H
Confidence 55679999988777 7777753 34567889999999999999999998655442211100 0 0000100 1
Q ss_pred HHHHHHH-hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEE--EeCCHHHH--HhhcCCccccEEEecCCCHHH
Q 006018 234 LNFERRR-LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVII--TTRDVQLL--KNHRGSRVGHVFEVKELSYND 306 (664)
Q Consensus 234 l~~~~~~-L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ili--TtR~~~~~--~~~~~~~~~~~~~l~~L~~~e 306 (664)
++..... ..+++.+|++|+++.. .+.+.+...+. .|..++| ||.+.... .... .....+.+.+++.++
T Consensus 81 i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~--SR~~~~~~~~ls~e~ 155 (413)
T PRK13342 81 IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALL--SRAQVFELKPLSEED 155 (413)
T ss_pred HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHh--ccceeeEeCCCCHHH
Confidence 1122111 2457889999999854 45566665543 2445554 34443221 1111 134689999999999
Q ss_pred HHHHHHHhhhCCCCCC-ccHHHHHHHHHHHhcCCchhHHHHh
Q 006018 307 SLTLFSRNAFGQNHPA-AGFLELSNIVIKYANGVPLALQVLG 347 (664)
Q Consensus 307 a~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~glPLal~~~a 347 (664)
..+++.+.+....... .-..+..+.+++.++|.+..+..+.
T Consensus 156 i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 156 IEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999987653211111 2334667788999999987665443
No 33
>PRK06893 DNA replication initiation factor; Validated
Probab=98.85 E-value=4.2e-08 Score=96.02 Aligned_cols=150 Identities=14% Similarity=0.220 Sum_probs=92.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHhcCceEEEEEecCCCH---HH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRLSRMKVLIVFYDLTDL---KQ 258 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~---~~ 258 (664)
.+.+.|+|++|+|||+||+++++.+..+...+.|+....... . ...+.+.+. +.-+|||||++.. .+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~-----~----~~~~~~~~~-~~dlLilDDi~~~~~~~~ 108 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY-----F----SPAVLENLE-QQDLVCLDDLQAVIGNEE 108 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh-----h----hHHHHhhcc-cCCEEEEeChhhhcCChH
Confidence 357899999999999999999999766655556654211000 0 011122222 2358999999863 23
Q ss_pred HH-HHhccCCCC-CCCcEEEE-EeCC---------HHHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHH
Q 006018 259 ID-LLIGRLDGF-VPGSRVII-TTRD---------VQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFL 326 (664)
Q Consensus 259 ~~-~l~~~~~~~-~~gs~Ili-TtR~---------~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 326 (664)
|+ .+...+... ..|+.+|| |+.. +++..++. ....+++++++.++.++++.+.+....- .-.+
T Consensus 109 ~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~---~g~~~~l~~pd~e~~~~iL~~~a~~~~l--~l~~ 183 (229)
T PRK06893 109 WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLT---WGEIYQLNDLTDEQKIIVLQRNAYQRGI--ELSD 183 (229)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHh---cCCeeeCCCCCHHHHHHHHHHHHHHcCC--CCCH
Confidence 33 222222211 23556655 4443 35555555 4678999999999999999998864332 2234
Q ss_pred HHHHHHHHHhcCCchhHHHH
Q 006018 327 ELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 327 ~~~~~i~~~~~glPLal~~~ 346 (664)
++..-|++.+.|..-++..+
T Consensus 184 ~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 184 EVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHhccCCHHHHHHH
Confidence 66777888887766555433
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=1.3e-10 Score=120.36 Aligned_cols=141 Identities=31% Similarity=0.465 Sum_probs=107.4
Q ss_pred cccCccCCCcc-CcCcccEEEcCCCCCCcccccccc--cccccccccccccccccccCCCCCCcEEeecCCCCCCccccc
Q 006018 476 LNENTSLPTGI-NLDSLKELYLGGCSNLKRFPEISC--NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSR 552 (664)
Q Consensus 476 ~~~~~~lp~~~-~l~~L~~L~l~~~~~~~~~p~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 552 (664)
.+.+..+|..+ ++..|..|||+.|++ ..+|...+ -|+.|-+++|+++.+|..++.+..|..||.+. +.+..+|..
T Consensus 107 ~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsq 184 (722)
T KOG0532|consen 107 HNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQ 184 (722)
T ss_pred hccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHH
Confidence 34455666665 477788888888764 44555554 67888888888888888888888888888886 456677778
Q ss_pred cCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCC
Q 006018 553 LCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLP 621 (664)
Q Consensus 553 ~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 621 (664)
++++.+|+.|++..|. +..+|..++. -.|..||+++|++..||-+|.+|+.|++|-|.+|++ ++-|
T Consensus 185 l~~l~slr~l~vrRn~-l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPL-qSPP 250 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNH-LEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPL-QSPP 250 (722)
T ss_pred hhhHHHHHHHHHhhhh-hhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCC-CCCh
Confidence 8888888888888877 6677777774 468888888888888888888888888888888654 4333
No 35
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.84 E-value=3.5e-08 Score=107.86 Aligned_cols=278 Identities=14% Similarity=0.169 Sum_probs=167.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec-----------------cc
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ-----------------NI 219 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-----------------~~ 219 (664)
.....|-|...+..+... .+.+.+.|..++|-|||||+.+.... ...-..+.|+. .+
T Consensus 17 ~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 17 RPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred CcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEeecCCccCCHHHHHHHHHHHH
Confidence 567788888766666542 46899999999999999999999873 34445566663 11
Q ss_pred hhhhhccc-chh---HH----h----HHHHHHHhc--CceEEEEEecCCCH------HHHHHHhccCCCCCCCcEEEEEe
Q 006018 220 RDESEKVG-GLA---NI----H----LNFERRRLS--RMKVLIVFYDLTDL------KQIDLLIGRLDGFVPGSRVIITT 279 (664)
Q Consensus 220 ~~~~~~~~-~l~---~~----~----l~~~~~~L~--~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IliTt 279 (664)
+......+ ..+ .. . +..+...+. .++..+||||..-. ..++.+... ..++-.+++||
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~S 167 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVTS 167 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEEe
Confidence 11111111 001 00 0 223333333 35889999996422 234455444 34678999999
Q ss_pred CCHHHHHhhcCCccccEEEec----CCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcCC-CC
Q 006018 280 RDVQLLKNHRGSRVGHVFEVK----ELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLKG-MS 354 (664)
Q Consensus 280 R~~~~~~~~~~~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~~-~~ 354 (664)
|...-.......-.+..+++. .++.+|+.++|..... .+-....++.+.+..+|-+-|+..++=.+++ .+
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-----l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-----LPLDAADLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-----CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 976443221111122334443 4899999999987641 1222345778999999999999998888873 23
Q ss_pred HHHHHHHHHHhhcCCCCcccc-eeeeecCCCChhhhhhhhhcccccCCCCHHHHHHHHHHcCCccccccceecccceeee
Q 006018 355 EEEWESAVNKLKRMPHMDIQK-VLKVSYDGLDDEEQNIFLDTACFFKGNDQYLVMNFLDACRFSAKIGISRLVGKSLVTI 433 (664)
Q Consensus 355 ~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~~l~la~f~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~li~~ 433 (664)
.+.-...+.- . ...+.+ ..+--++.||++.|..++.+|++..- +-.....+. +..+....++.|.+++|.-.
T Consensus 243 ~~q~~~~LsG---~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f-~~eL~~~Lt--g~~ng~amLe~L~~~gLFl~ 315 (894)
T COG2909 243 AEQSLRGLSG---A-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF-NDELCNALT--GEENGQAMLEELERRGLFLQ 315 (894)
T ss_pred HHHHhhhccc---h-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh-hHHHHHHHh--cCCcHHHHHHHHHhCCCcee
Confidence 3322221110 0 001111 11224689999999999999988442 222222222 12233445788888887653
Q ss_pred e----CCeEEechHHHHHHhHHhhcc
Q 006018 434 S----NNKITMHDLLQEMGGEIVRQE 455 (664)
Q Consensus 434 ~----~~~~~mHdlv~~~~~~i~~~~ 455 (664)
. ++.|+.|.+..+|-+.....+
T Consensus 316 ~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 316 RLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred eecCCCceeehhHHHHHHHHhhhccc
Confidence 2 678999999999988766543
No 36
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.82 E-value=1.2e-07 Score=100.39 Aligned_cols=234 Identities=18% Similarity=0.205 Sum_probs=128.5
Q ss_pred CCCCceeehhhHHHHHhhhcC--CCCcceEEEEecCCCCChHHHHHHHHHHhhccCC------cceeeccc---------
Q 006018 157 NKDQLVGVESIIKEIESQLLS--GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE------GSYFMQNI--------- 219 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~--------- 219 (664)
.++.++||++++++|...|.. .+.....+.|+|++|+|||++++++++....... ..+++...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 456899999999999998853 1233457899999999999999999987653322 11222110
Q ss_pred hhhhhcc---c------chhHHh-HHHHHHHhc--CceEEEEEecCCCHH-----HHHHHhccC-CCCC--CCcEEEEEe
Q 006018 220 RDESEKV---G------GLANIH-LNFERRRLS--RMKVLIVFYDLTDLK-----QIDLLIGRL-DGFV--PGSRVIITT 279 (664)
Q Consensus 220 ~~~~~~~---~------~l~~~~-l~~~~~~L~--~~~~LlVlDdv~~~~-----~~~~l~~~~-~~~~--~gs~IliTt 279 (664)
....... + +....+ +..+.+.+. +++++||||+++... .+..+.... .... ....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 0011100 0 001111 334444443 467899999998761 123333221 1111 233455556
Q ss_pred CCHHHHHhhc----CCccccEEEecCCCHHHHHHHHHHhhh---CCCCCCccHHHHHHHHHHHhcCCchhH-HHHhhhc-
Q 006018 280 RDVQLLKNHR----GSRVGHVFEVKELSYNDSLTLFSRNAF---GQNHPAAGFLELSNIVIKYANGVPLAL-QVLGSYL- 350 (664)
Q Consensus 280 R~~~~~~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~glPLal-~~~a~~l- 350 (664)
.......... ..-....+.+++++.+|..+++..++- ......+...+.+..++....|.|..+ .++-...
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5443322111 110125688999999999999988763 111122233344455666667887443 3221111
Q ss_pred ----C---CCCHHHHHHHHHHhhcCCCCcccceeeeecCCCChhhhhhhhhccc
Q 006018 351 ----K---GMSEEEWESAVNKLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTAC 397 (664)
Q Consensus 351 ----~---~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la~ 397 (664)
. ..+.+....+...+.. ....-++..||.+++.++..++.
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~~-------~~~~~~i~~l~~~~~~~l~ai~~ 299 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIEK-------DRLLELIRGLPTHSKLVLLAIAN 299 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHH-------HHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 2366776666665521 11223556888888877766553
No 37
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.82 E-value=1e-08 Score=103.30 Aligned_cols=135 Identities=23% Similarity=0.338 Sum_probs=105.2
Q ss_pred CCcceEEEeccccccccchHHHHHHHHhhCCCceeecC-CcCCCCcccHHHHHhhhcCcEEEEEecCCcccc--------
Q 006018 13 HPKHDVFLSFRGKDVRHNFVSHLNAALCREKIETFIDD-KLNRGNEISPSLSSAIEGSKISIVIFSEGYASS-------- 83 (664)
Q Consensus 13 ~~~~dvFis~~~~d~~~~f~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s-------- 83 (664)
..+.|||||||.. +....++-+.-.|.-.|++||+|- .+..|+. ...+.+.|..++..|.|+|||..+.
T Consensus 610 skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nCe 687 (832)
T KOG3678|consen 610 SKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCE 687 (832)
T ss_pred cCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccHH
Confidence 4679999999876 345678888888889999999997 8888865 5578899999999999999988654
Q ss_pred hhhHHHHHHHHHhhhhcCceEEEEEee---------cCCCccccccCCCCcccccCCCChhHhHhhhhhccccccccCCC
Q 006018 84 RWCLNELVKILESKNKYGQIVVPVFYL---------VDPSDAGYCPSLGWMGIFDIPTSESVLIEGNVNDISKKLSDLFP 154 (664)
Q Consensus 84 ~wc~~El~~~~~~~~~~~~~v~pv~~~---------v~p~~vr~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p 154 (664)
.|...|+.-+++|.+. |+|||-. +-|.|+|- +..|+|+....+++..-++++++-+..+++.+.|
T Consensus 688 DWVHKEl~~Afe~~KN----IiPI~D~aFE~Pt~ed~iPnDirm--i~kyNGvKWvHdYQdA~maKvvRFitGe~nRttp 761 (832)
T KOG3678|consen 688 DWVHKELKCAFEHQKN----IIPIFDTAFEFPTKEDQIPNDIRM--ITKYNGVKWVHDYQDACMAKVVRFITGELNRTTP 761 (832)
T ss_pred HHHHHHHHHHHHhcCC----eeeeecccccCCCchhcCcHHHHH--HHhccCeeeehhhHHHHHHHHHHHHhccccCCCC
Confidence 7888898888888654 9999965 23344433 3345444455578888899999998888887776
Q ss_pred C
Q 006018 155 S 155 (664)
Q Consensus 155 ~ 155 (664)
.
T Consensus 762 t 762 (832)
T KOG3678|consen 762 T 762 (832)
T ss_pred C
Confidence 5
No 38
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.81 E-value=1.5e-07 Score=95.14 Aligned_cols=167 Identities=13% Similarity=0.132 Sum_probs=95.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc-cCCcceeec----cchh----hhhccc----ch-hHHhHHHHHH-----Hhc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS-HFEGSYFMQ----NIRD----ESEKVG----GL-ANIHLNFERR-----RLS 242 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~----~~~~----~~~~~~----~l-~~~~l~~~~~-----~L~ 242 (664)
...+.|+|++|+|||||++.+++.... .+. .+++. +..+ .....+ .. .......+.+ ...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~-~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVV-AAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE-EeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 458899999999999999999988652 211 11211 1111 111111 00 0011222222 235
Q ss_pred CceEEEEEecCCCH--HHHHHHhccC---CCCCCCcEEEEEeCCHHHHHhhcC-------CccccEEEecCCCHHHHHHH
Q 006018 243 RMKVLIVFYDLTDL--KQIDLLIGRL---DGFVPGSRVIITTRDVQLLKNHRG-------SRVGHVFEVKELSYNDSLTL 310 (664)
Q Consensus 243 ~~~~LlVlDdv~~~--~~~~~l~~~~---~~~~~gs~IliTtR~~~~~~~~~~-------~~~~~~~~l~~L~~~ea~~L 310 (664)
+++.++|+||++.. +.++.+.... ........|++|... ........ ......+.+++++.+|..++
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 67899999999764 3444443211 111222345555543 22211110 01234678999999999999
Q ss_pred HHHhhhCCC--CCCccHHHHHHHHHHHhcCCchhHHHHhhhc
Q 006018 311 FSRNAFGQN--HPAAGFLELSNIVIKYANGVPLALQVLGSYL 350 (664)
Q Consensus 311 f~~~a~~~~--~~~~~~~~~~~~i~~~~~glPLal~~~a~~l 350 (664)
+...+.... ....-..+..+.|++.++|.|..|..++..+
T Consensus 201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 987753221 1122345788899999999999999888876
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.80 E-value=1.8e-09 Score=112.06 Aligned_cols=154 Identities=23% Similarity=0.231 Sum_probs=97.4
Q ss_pred CcccEEEcCCCCCCc----c----ccccccccccccccccccc-----ccccccCCCCCCcEEeecCCCCCC----cccc
Q 006018 489 DSLKELYLGGCSNLK----R----FPEISCNIEDLDLKETAIE-----ELPSSIGNLSRLVDLDLTNCSGLK----SVSS 551 (664)
Q Consensus 489 ~~L~~L~l~~~~~~~----~----~p~~~~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~----~lp~ 551 (664)
++|+.|++++|.... . ++....+|+.|++++|.++ .++..+..+++|+.|++++|.... .++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 448888888876542 1 1111146788888888776 344456667788888888765442 2333
Q ss_pred ccCCCCCCCEEeeeCCCCCC----ccccccCCCCCCCEEEccCCCCccc-cccc-----cCCCCCCEEeecCCCCCC---
Q 006018 552 RLCNLKSLRRLNLSGCLKLE----KLPEEIGNLESLEYLNLAEKDFEKI-PSSM-----KQLSKLSDLRLQNCKRLQ--- 618 (664)
Q Consensus 552 ~~~~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i-----~~L~~L~~L~L~~~~~l~--- 618 (664)
.+..+++|+.|++++|.+.+ .++..+..+++|++|++++|.++.. +..+ ...+.|++|++++|.+..
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 45556788888888887542 2344566777888888888877631 1111 124688888888876541
Q ss_pred -cCCCCCCCCEEeeeCCCCCccccCCCccccc
Q 006018 619 -SLPELPCGSSIHARHCTSLKTLSNSSTLLTR 649 (664)
Q Consensus 619 -~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~ 649 (664)
.+.. .+..+++|+.+++++|.++.
T Consensus 268 ~~l~~-------~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 268 KDLAE-------VLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHH-------HHhcCCCccEEECCCCCCcH
Confidence 1222 23345788888888888873
No 40
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=1.2e-08 Score=117.50 Aligned_cols=287 Identities=17% Similarity=0.199 Sum_probs=169.9
Q ss_pred ceeehhhHHHHHhhhcCCC-CcceEEEEecCCCCChHHHHHHHHHHhhcc--------CC-------cceeeccchhhhh
Q 006018 161 LVGVESIIKEIESQLLSGS-TEFNTVGIWGIGGIGKTTIASAIYSNISSH--------FE-------GSYFMQNIRDESE 224 (664)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--------f~-------~~~~~~~~~~~~~ 224 (664)
++||+.+++.|...+..-. ....++.+.|..|||||+|+++|...+.+. |+ ...|+..+++...
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999988886433 335699999999999999999999885544 21 1222223333221
Q ss_pred ccc---chhH---------------H-------hH---------------------------HHHHHHh-cCceEEEEEe
Q 006018 225 KVG---GLAN---------------I-------HL---------------------------NFERRRL-SRMKVLIVFY 251 (664)
Q Consensus 225 ~~~---~l~~---------------~-------~l---------------------------~~~~~~L-~~~~~LlVlD 251 (664)
... ..+. + ++ ..+.... +.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 110 0000 0 00 0112222 4469999999
Q ss_pred cCCCH-H----HHHHHhccCC--CC-CCCcEEEEEeCCH--HHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCC
Q 006018 252 DLTDL-K----QIDLLIGRLD--GF-VPGSRVIITTRDV--QLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHP 321 (664)
Q Consensus 252 dv~~~-~----~~~~l~~~~~--~~-~~gs~IliTtR~~--~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 321 (664)
|+.-. . -++.+..... .+ .+..-.+.|.+.. .+... ......+.+.+|+..+..+|........
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~---~~~i~~I~L~PL~~~d~~~lV~~~l~~~--- 235 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKS---ATNITTITLAPLSRADTNQLVAATLGCT--- 235 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhc---CCceeEEecCcCchhhHHHHHHHHhCCc---
Confidence 99422 2 2333333322 00 0111122233322 11111 1245789999999999999998776321
Q ss_pred CccHHHHHHHHHHHhcCCchhHHHHhhhcCC-------CCHHHHHHHHHHhhcCC-CCcccceeeeecCCCChhhhhhhh
Q 006018 322 AAGFLELSNIVIKYANGVPLALQVLGSYLKG-------MSEEEWESAVNKLKRMP-HMDIQKVLKVSYDGLDDEEQNIFL 393 (664)
Q Consensus 322 ~~~~~~~~~~i~~~~~glPLal~~~a~~l~~-------~~~~~w~~~l~~l~~~~-~~~i~~~l~~sy~~L~~~~k~~~l 393 (664)
.....+..+.|+++..|+|+-+..+-..+.. .....|..-..++.... .+.+...+..-.+.||...|+++.
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2223466788999999999999988888843 23455554444433221 112333466678899999999999
Q ss_pred hcccccCCCCHHHHHHHHHHcCCcc-ccccceecccceeeee--------CC---eEEechHHHHHHhHHhh
Q 006018 394 DTACFFKGNDQYLVMNFLDACRFSA-KIGISRLVGKSLVTIS--------NN---KITMHDLLQEMGGEIVR 453 (664)
Q Consensus 394 ~la~f~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~~~li~~~--------~~---~~~mHdlv~~~~~~i~~ 453 (664)
..||+...++.+.+..++....... ...++.|....++..+ .. .-..|+++|+.+.....
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~ 387 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIP 387 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCc
Confidence 9999999999888877776433222 2223333333333211 11 12579999998876543
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=1.9e-09 Score=99.27 Aligned_cols=124 Identities=25% Similarity=0.362 Sum_probs=38.7
Q ss_pred cccccccccccccccccccC-CCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCcccccc-CCCCCCCEEEc
Q 006018 511 NIEDLDLKETAIEELPSSIG-NLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEI-GNLESLEYLNL 588 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l-~~l~~L~~L~l 588 (664)
+++.|+|++|.|+.+. .++ .+.+|+.|+|++| .+..++ .+..++.|+.|++++|.+ ..++..+ ..+++|++|++
T Consensus 20 ~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccc-chhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCC-CccccchHHhCCcCCEEEC
Confidence 4555666666665553 343 4666777777753 344454 456667777777777663 3343333 34667777777
Q ss_pred cCCCCcccc--ccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccC
Q 006018 589 AEKDFEKIP--SSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSN 642 (664)
Q Consensus 589 ~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~l 642 (664)
++|.|..+. ..+..+++|+.|+|.+|+.... +. .....+..+|+|+.||-
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~---YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KN---YRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TT---HHHHHHHH-TT-SEETT
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccch-hh---HHHHHHHHcChhheeCC
Confidence 777766443 2455667777777777655322 11 11223455666666663
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.74 E-value=1.7e-08 Score=113.45 Aligned_cols=111 Identities=24% Similarity=0.397 Sum_probs=89.3
Q ss_pred cccccccccccc-ccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccC
Q 006018 512 IEDLDLKETAIE-ELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAE 590 (664)
Q Consensus 512 L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 590 (664)
++.|+|++|.+. .+|..++.+++|+.|+|++|.....+|..++.+++|+.|+|++|.+.+.+|..+++|++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777776 6777888888889999988877778888888888899999988888888888888888899999988
Q ss_pred CCCc-cccccccCC-CCCCEEeecCCCCCCcCCC
Q 006018 591 KDFE-KIPSSMKQL-SKLSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 591 n~i~-~lp~~i~~L-~~L~~L~L~~~~~l~~lp~ 622 (664)
|.+. .+|..+..+ .++..+++.+|..+...|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 8887 778777653 4677888888876665554
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=4.1e-10 Score=116.72 Aligned_cols=156 Identities=28% Similarity=0.428 Sum_probs=80.2
Q ss_pred ccCCCccC-cCcccEEEcCCCCCCcccccccc---cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCC
Q 006018 480 TSLPTGIN-LDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCN 555 (664)
Q Consensus 480 ~~lp~~~~-l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 555 (664)
..+|..+. +..|..+.|+.|. ...+|.... .|.+|+|+.|.+..+|..++.|+ |+.|-+++ ++++.+|..++.
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~ 164 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGL 164 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCccccc
Confidence 34444332 4445555555543 233343333 34455555555555555544432 45555553 445555555555
Q ss_pred CCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCC
Q 006018 556 LKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCT 635 (664)
Q Consensus 556 l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~ 635 (664)
+..|..|+.+.|. +..+|..++++.+|+.|.++.|++..+|..+..| .|..||+|.|+ +..+|- .+.+|+
T Consensus 165 ~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iPv-------~fr~m~ 234 (722)
T KOG0532|consen 165 LPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLPV-------DFRKMR 234 (722)
T ss_pred chhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecch-------hhhhhh
Confidence 5555555555555 4455555555555555555555555555555543 25555555432 344444 455555
Q ss_pred CCccccCCCcccc
Q 006018 636 SLKTLSNSSTLLT 648 (664)
Q Consensus 636 ~L~~L~ls~N~l~ 648 (664)
.|+.|-|.+|+|+
T Consensus 235 ~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 235 HLQVLQLENNPLQ 247 (722)
T ss_pred hheeeeeccCCCC
Confidence 5555555555554
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.74 E-value=6.2e-09 Score=95.89 Aligned_cols=122 Identities=26% Similarity=0.376 Sum_probs=44.5
Q ss_pred ccccccccccccCCCCCCcEEeecCCCCCCccccccC-CCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccc
Q 006018 518 KETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLC-NLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKI 596 (664)
Q Consensus 518 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l 596 (664)
..+.|+..|. +.+..+++.|+|.+|. +..+. .++ .+.+|+.|+|++|. +..++ .+..+++|++|++++|.|+.+
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-
T ss_pred cccccccccc-cccccccccccccccc-ccccc-chhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCCcc
Confidence 3344555543 4566689999999864 44454 455 58899999999998 44554 688899999999999999999
Q ss_pred cccc-cCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccC
Q 006018 597 PSSM-KQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRS 650 (664)
Q Consensus 597 p~~i-~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~ 650 (664)
+..+ ..+++|+.|++++|++ ..+..+- .++.|++|+.|++.+|+++..
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I-~~l~~l~-----~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKI-SDLNELE-----PLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCG-----GGGG-TT--EEE-TT-GGGGS
T ss_pred ccchHHhCCcCCEEECcCCcC-CChHHhH-----HHHcCCCcceeeccCCcccch
Confidence 7666 4699999999999765 3333321 367899999999999999853
No 45
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.73 E-value=3e-09 Score=110.39 Aligned_cols=172 Identities=20% Similarity=0.156 Sum_probs=121.1
Q ss_pred cCcccEEEcCCCCCCcccccccc------ccccccccccccc-----ccccccCCC-CCCcEEeecCCCCCC----cccc
Q 006018 488 LDSLKELYLGGCSNLKRFPEISC------NIEDLDLKETAIE-----ELPSSIGNL-SRLVDLDLTNCSGLK----SVSS 551 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~------~L~~L~l~~~~i~-----~lp~~~~~l-~~L~~L~l~~~~~l~----~lp~ 551 (664)
+++|+.|++++|......+..+. +|+.|++++|.+. .+...+..+ ++|+.|++++|.... .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 77999999999986544433322 3999999998886 233456667 899999999987652 3445
Q ss_pred ccCCCCCCCEEeeeCCCCCC----ccccccCCCCCCCEEEccCCCCc-----cccccccCCCCCCEEeecCCCCCCcCC-
Q 006018 552 RLCNLKSLRRLNLSGCLKLE----KLPEEIGNLESLEYLNLAEKDFE-----KIPSSMKQLSKLSDLRLQNCKRLQSLP- 621 (664)
Q Consensus 552 ~~~~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~l~~n~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp- 621 (664)
.+..+++|+.|++++|.+.+ .++..+..+++|++|++++|.+. .++..+..+++|++|++++|+....-.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 56778899999999998653 34455667789999999999986 344567788999999999987654111
Q ss_pred CCCCCCEEeeeCCCCCccccCCCccccc-----------CCCCCceEEccCC
Q 006018 622 ELPCGSSIHARHCTSLKTLSNSSTLLTR-----------SSKHWDIFNFSNC 662 (664)
Q Consensus 622 ~l~~~~~l~~~~~~~L~~L~ls~N~l~~-----------~~~~~~~~~~~~c 662 (664)
.+... .....+.|+.|++++|.++. ..+.+..+++.++
T Consensus 240 ~l~~~---~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 240 ALASA---LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHH---HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 10000 01134789999999999861 2345566666543
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.71 E-value=2.5e-07 Score=90.77 Aligned_cols=174 Identities=14% Similarity=0.188 Sum_probs=103.5
Q ss_pred CCCcee--ehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHH
Q 006018 158 KDQLVG--VESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLN 235 (664)
Q Consensus 158 ~~~~vG--r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~ 235 (664)
.++|++ .+..++++.+++.. .....+.|+|.+|+|||+||+.+++.........+++. ........ .
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~~--------~ 82 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQAD--------P 82 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHhH--------H
Confidence 345652 44567778877642 34568999999999999999999988654443334443 22221110 1
Q ss_pred HHHHHhcCceEEEEEecCCCHH---H-HHHHhccCCC-CCCCcEEEEEeCCHH---------HHHhhcCCccccEEEecC
Q 006018 236 FERRRLSRMKVLIVFYDLTDLK---Q-IDLLIGRLDG-FVPGSRVIITTRDVQ---------LLKNHRGSRVGHVFEVKE 301 (664)
Q Consensus 236 ~~~~~L~~~~~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gs~IliTtR~~~---------~~~~~~~~~~~~~~~l~~ 301 (664)
.+.+.+.. .-+|||||++... . .+.+...+.. ...+.++|+||+... +...+. ....+++++
T Consensus 83 ~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~---~~~~i~l~~ 158 (226)
T TIGR03420 83 EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA---WGLVFQLPP 158 (226)
T ss_pred HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh---cCeeEecCC
Confidence 11122222 3489999997543 2 2333332221 123447888887432 222221 245799999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhh
Q 006018 302 LSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGS 348 (664)
Q Consensus 302 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~ 348 (664)
++.++...++...+-... ..-..+..+.+++.+.|+|..+..+..
T Consensus 159 l~~~e~~~~l~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 159 LSDEEKIAALQSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred CCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 999999999887653221 122345667788889999887775543
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=3.4e-08 Score=110.98 Aligned_cols=108 Identities=24% Similarity=0.308 Sum_probs=93.8
Q ss_pred CCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeec
Q 006018 534 RLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFE-KIPSSMKQLSKLSDLRLQ 612 (664)
Q Consensus 534 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~lp~~i~~L~~L~~L~L~ 612 (664)
.++.|+|++|.....+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+. .+|..+++|++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999998888889999999999999999999988999999999999999999999998 789999999999999999
Q ss_pred CCCCCCcCCCCCCCCEEeeeC-CCCCccccCCCcccc
Q 006018 613 NCKRLQSLPELPCGSSIHARH-CTSLKTLSNSSTLLT 648 (664)
Q Consensus 613 ~~~~l~~lp~l~~~~~l~~~~-~~~L~~L~ls~N~l~ 648 (664)
+|++.+.+|. .+.. ..++..+++++|...
T Consensus 499 ~N~l~g~iP~-------~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPA-------ALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCCh-------HHhhccccCceEEecCCccc
Confidence 9999999987 2322 245667778877643
No 48
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.65 E-value=1.1e-09 Score=108.72 Aligned_cols=174 Identities=24% Similarity=0.277 Sum_probs=110.7
Q ss_pred ceeccccCccCCCcc--CcCcccEEEcCCCCCCccccccccc---c-cccccccccccccccc-cCC-------------
Q 006018 472 IYQVLNENTSLPTGI--NLDSLKELYLGGCSNLKRFPEISCN---I-EDLDLKETAIEELPSS-IGN------------- 531 (664)
Q Consensus 472 ~~~~~~~~~~lp~~~--~l~~L~~L~l~~~~~~~~~p~~~~~---L-~~L~l~~~~i~~lp~~-~~~------------- 531 (664)
+..-.+..+++|+.. .+++|++|||+.|.+...-|+.+.. + +-+.+++|+|+.+|.. |+.
T Consensus 72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence 334456677888875 4999999999999866666666653 2 2345566888888763 333
Q ss_pred -----------CCCCcEEeecCCCCCCcccc-ccCCCCCCCEEeeeCCCCC-----------------------------
Q 006018 532 -----------LSRLVDLDLTNCSGLKSVSS-RLCNLKSLRRLNLSGCLKL----------------------------- 570 (664)
Q Consensus 532 -----------l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~L~~~~~~----------------------------- 570 (664)
+++|..|.+.+| .+..++. ++..+..++++.+..|...
T Consensus 152 i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r 230 (498)
T KOG4237|consen 152 INCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR 230 (498)
T ss_pred hcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH
Confidence 445555555543 3333443 4555666666666555411
Q ss_pred ------------------Ccc--------------c-cccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCC
Q 006018 571 ------------------EKL--------------P-EEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKR 616 (664)
Q Consensus 571 ------------------~~~--------------p-~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~ 616 (664)
+.+ | ..|+.|++|++|+|++|+++.+ +.+|..+..|+.|.|..|++
T Consensus 231 l~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l 310 (498)
T KOG4237|consen 231 LYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKL 310 (498)
T ss_pred HHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchH
Confidence 001 1 1356677888888888888866 45677777788888877654
Q ss_pred CCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCCC
Q 006018 617 LQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSKH 653 (664)
Q Consensus 617 l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~~ 653 (664)
-..-.. .+.+++.|+.|+|.+|+|+-..|.
T Consensus 311 ~~v~~~-------~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 311 EFVSSG-------MFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred HHHHHH-------hhhccccceeeeecCCeeEEEecc
Confidence 332222 577788899999999998865554
No 49
>PF13173 AAA_14: AAA domain
Probab=98.65 E-value=1.8e-07 Score=82.73 Aligned_cols=122 Identities=19% Similarity=0.204 Sum_probs=77.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHH-hHHHHHHHhcCceEEEEEecCCCHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANI-HLNFERRRLSRMKVLIVFYDLTDLKQID 260 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~L~~~~~LlVlDdv~~~~~~~ 260 (664)
.+++.|.|+.|+|||||+++++++.. .-...+++. ..+..... .... -.+.+.+....++.+++||++.....|.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~ 77 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRDRR--LADPDLLEYFLELIKPGKKYIFIDEIQYLPDWE 77 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHHHH--HhhhhhHHHHHHhhccCCcEEEEehhhhhccHH
Confidence 36899999999999999999998865 222333332 21111100 0000 1223333344478899999999888888
Q ss_pred HHhccCCCCCCCcEEEEEeCCHHHHHhhc---CCccccEEEecCCCHHHH
Q 006018 261 LLIGRLDGFVPGSRVIITTRDVQLLKNHR---GSRVGHVFEVKELSYNDS 307 (664)
Q Consensus 261 ~l~~~~~~~~~gs~IliTtR~~~~~~~~~---~~~~~~~~~l~~L~~~ea 307 (664)
.....+-...+..+|++|+.......... .......+++.+|+..|-
T Consensus 78 ~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 78 DALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 77776665556789999999876653311 111234678889987763
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.64 E-value=3e-07 Score=86.57 Aligned_cols=178 Identities=19% Similarity=0.203 Sum_probs=100.7
Q ss_pred CCCCceeehhhHHHHHhhhcC---CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESIIKEIESQLLS---GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
.-++|||.+..+..+.-++.. ..+....+.+||++|+||||||..+++.....|.. ... ....+ ..+
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg--~~i~k-----~~d 91 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSG--PAIEK-----AGD 91 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EEC--CC--S-----CHH
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccc--hhhhh-----HHH
Confidence 678999999999887665542 23446789999999999999999999998776632 110 00111 112
Q ss_pred HHHHHHHhcCceEEEEEecCCCH--HHHHHHhccCCCC--------CC-----------CcEEEEEeCCHHHHHhhcCCc
Q 006018 234 LNFERRRLSRMKVLIVFYDLTDL--KQIDLLIGRLDGF--------VP-----------GSRVIITTRDVQLLKNHRGSR 292 (664)
Q Consensus 234 l~~~~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~~-----------gs~IliTtR~~~~~~~~~~~~ 292 (664)
+..+...++ ++-+|++|.+... .+-+.+.+...++ ++ -+-|=.|||...+..... ..
T Consensus 92 l~~il~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLr-dR 169 (233)
T PF05496_consen 92 LAAILTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLR-DR 169 (233)
T ss_dssp HHHHHHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCC-TT
T ss_pred HHHHHHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHH-hh
Confidence 333333343 3557788999754 3445555443221 22 233455888644433322 12
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhh
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGS 348 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~ 348 (664)
..-+.+++..+.+|-.+...+.+.. -..+-..+.+.+|++.+.|-|--..-+-.
T Consensus 170 Fgi~~~l~~Y~~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 170 FGIVLRLEFYSEEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp SSEEEE----THHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred cceecchhcCCHHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 4456789999999999999887632 22344567889999999999965444433
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=4.8e-09 Score=100.53 Aligned_cols=100 Identities=27% Similarity=0.380 Sum_probs=44.2
Q ss_pred ccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCC
Q 006018 512 IEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEK 591 (664)
Q Consensus 512 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 591 (664)
|+.|||++|.|+.+..+..-++.++.|++++|.. ..+. ++..+++|+.|+|++|. +..+...-..+.++++|.|++|
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i-~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRI-RTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccce-eeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhh
Confidence 4444444454544444444444555555554322 2222 24444555555555443 2222222233444455555555
Q ss_pred CCccccccccCCCCCCEEeecCCC
Q 006018 592 DFEKIPSSMKQLSKLSDLRLQNCK 615 (664)
Q Consensus 592 ~i~~lp~~i~~L~~L~~L~L~~~~ 615 (664)
.+..+. ++..|-+|..||+++|+
T Consensus 363 ~iE~LS-GL~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 363 KIETLS-GLRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hHhhhh-hhHhhhhheeccccccc
Confidence 444442 34444445555555443
No 52
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=1.3e-06 Score=91.66 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=112.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC-----c-ceee---------ccchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE-----G-SYFM---------QNIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-----~-~~~~---------~~~~~ 221 (664)
...+++|.+..++.+...+..+ .-...+.++|+.|+||||+|+.+++.+..... + .+-. .++.+
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred chhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 5678999999999999988653 23456789999999999999999988542110 0 0000 00000
Q ss_pred hhhcccchhHHhHHHHHHHh-----cCceEEEEEecCCCHH--HHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCcc
Q 006018 222 ESEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDLK--QIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRV 293 (664)
Q Consensus 222 ~~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~ 293 (664)
.... ....-.+++.+.+.+ .+++-++|+|+++... .++.++..+....+..++|++|.+.+ +.....+ .
T Consensus 93 ~~~~-~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S--R 169 (363)
T PRK14961 93 IDAA-SRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS--R 169 (363)
T ss_pred eccc-ccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh--h
Confidence 0000 001111233333332 2345699999998654 46677777766556677777776543 3222221 3
Q ss_pred ccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhH
Q 006018 294 GHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 294 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 343 (664)
...+++++++.++..+.+...+-... ..-..+.++.|++.++|.|..+
T Consensus 170 c~~~~~~~l~~~el~~~L~~~~~~~g--~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 170 CLQFKLKIISEEKIFNFLKYILIKES--IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred ceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 56899999999999998887663322 1123356778889999988643
No 53
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.61 E-value=2.1e-09 Score=117.60 Aligned_cols=110 Identities=33% Similarity=0.530 Sum_probs=70.1
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccC
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAE 590 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 590 (664)
+|+.|+|++|.+..+|..+..+.+|+.|+++. +.+...|.+..++.+|++|+|.+|. +..+|..+..+++|++|++++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKNNR-LQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheeccch-hhcCchhHHhhhcccccccch
Confidence 56666666666666666666666666666664 4566666666666666666666554 566666666666666666666
Q ss_pred CCCccccccccCCCCCCEEeecCCCCCCcCCC
Q 006018 591 KDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 591 n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 622 (664)
|.+..+|..+..++.+..+..++|..+..++.
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~ 155 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQ 155 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhcc
Confidence 66666666666666666666666644444433
No 54
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.61 E-value=5.4e-07 Score=94.27 Aligned_cols=182 Identities=15% Similarity=0.128 Sum_probs=107.7
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC-Ccceeeccchhhhhcc-------cc
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF-EGSYFMQNIRDESEKV-------GG 228 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~-------~~ 228 (664)
...+++|++..++.+..++..+ ..+.+.++|++|+||||+|+.+++.+..+. .......+..+..... ..
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcc
Confidence 4567999999999999988643 345688999999999999999998864332 2211111222111000 00
Q ss_pred ----hh---------HHhHHHHHHHh------cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHH
Q 006018 229 ----LA---------NIHLNFERRRL------SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLK 286 (664)
Q Consensus 229 ----l~---------~~~l~~~~~~L------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~ 286 (664)
+. ...++.+.+.. ...+-+||+||++.. +..+.+...+....+.+++|+||.... +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00 00111111111 133458999999754 234445444444445678888875432 222
Q ss_pred hhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 287 NHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 287 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
.... ....+++.+++.++..+.+...+-..... -..+..+.+++.++|.+-.+.
T Consensus 171 ~L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 171 PIRS--RCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhcC--CceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2221 34578889999999999988876322221 234667788888888765544
No 55
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.58 E-value=5.8e-07 Score=94.65 Aligned_cols=176 Identities=19% Similarity=0.235 Sum_probs=101.0
Q ss_pred CCCCceeehhhHHHHHhhhcCC--C---------CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLSG--S---------TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~---------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
...++.|+++.+++|.+.+... . ...+-+.|+|++|+|||++|+++++.....|-.... .+....
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~----~~l~~~ 195 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG----SELVRK 195 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch----HHHHHH
Confidence 4567899999999998876421 1 124558999999999999999999987655422211 111111
Q ss_pred ccchhHHhHHHHHHH-hcCceEEEEEecCCCHH----------------HHHHHhccCCCC--CCCcEEEEEeCCHHHHH
Q 006018 226 VGGLANIHLNFERRR-LSRMKVLIVFYDLTDLK----------------QIDLLIGRLDGF--VPGSRVIITTRDVQLLK 286 (664)
Q Consensus 226 ~~~l~~~~l~~~~~~-L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IliTtR~~~~~~ 286 (664)
..+-....+..+.+. -...+.+|++|+++... .+..+...+... ..+.+||.||...+...
T Consensus 196 ~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld 275 (364)
T TIGR01242 196 YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILD 275 (364)
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCC
Confidence 000000111222222 23457899999987531 122333323221 24567888887543321
Q ss_pred hh--cCCccccEEEecCCCHHHHHHHHHHhhhCCCCCC-ccHHHHHHHHHHHhcCCc
Q 006018 287 NH--RGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPA-AGFLELSNIVIKYANGVP 340 (664)
Q Consensus 287 ~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~glP 340 (664)
.. .....+..+.++..+.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 276 ~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 276 PALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred hhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 11 1112456899999999999999998874433222 12 345556666553
No 56
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=2e-06 Score=89.62 Aligned_cols=185 Identities=14% Similarity=0.062 Sum_probs=114.4
Q ss_pred CCCCCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC--Cc--------------ce---
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF--EG--------------SY--- 214 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~--------------~~--- 214 (664)
|. ...+++|.+...+.|.+.+..+ .-.....++|+.|+||+|+|..+++.+-.+= .. .+
T Consensus 15 P~-~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 15 PR-ETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CC-chhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 44 6788999999999999988654 2244688999999999999999998853210 00 00
Q ss_pred -eec-----cchhhh----hcc----cchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCc
Q 006018 215 -FMQ-----NIRDES----EKV----GGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGS 273 (664)
Q Consensus 215 -~~~-----~~~~~~----~~~----~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs 273 (664)
++. ++.... .+. ..+.-.+++.+.+.+ .+.+.++|+|+++.. .....++..+....+++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 000 000000 000 011111233333333 245678999999754 45667776666555667
Q ss_pred EEEEEeCCHHHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHh
Q 006018 274 RVIITTRDVQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLG 347 (664)
Q Consensus 274 ~IliTtR~~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a 347 (664)
.+|++|.+.+.... ........+.+.+++.++..+++..... . .. .+....++..++|.|+....+.
T Consensus 173 ~~IL~t~~~~~llp-ti~SRc~~i~l~~l~~~~i~~~L~~~~~---~--~~-~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 173 LFLLVSHAPARLLP-TIRSRCRKLRLRPLAPEDVIDALAAAGP---D--LP-DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEEECCchhchH-HhhccceEEECCCCCHHHHHHHHHHhcc---c--CC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 77777776643221 1122567899999999999999987641 1 11 1222678899999998665443
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=8.5e-07 Score=99.46 Aligned_cols=182 Identities=14% Similarity=0.086 Sum_probs=113.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-C-Cc-ceeec------------cchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-F-EG-SYFMQ------------NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f-~~-~~~~~------------~~~~ 221 (664)
...++||.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+... . .. .|..+ ++.+
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 5678999999999999988643 224456899999999999999999986432 1 00 00000 0000
Q ss_pred hhhcccchhHHhHHHHHH-----HhcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCcc
Q 006018 222 ESEKVGGLANIHLNFERR-----RLSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSRV 293 (664)
Q Consensus 222 ~~~~~~~l~~~~l~~~~~-----~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~ 293 (664)
.... ....-.+++.+.+ -..+++-++|||+++.. +..+.|+..+.......++|++|.+. .+...... .
T Consensus 93 idAa-s~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS--R 169 (944)
T PRK14949 93 VDAA-SRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS--R 169 (944)
T ss_pred eccc-cccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH--h
Confidence 0000 0000011222222 12456779999999754 56788877776655667776665543 33322211 3
Q ss_pred ccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 294 GHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 294 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
...|.+.+|+.++..+.+.+.+-... .....+.++.|++.++|.|.-+.
T Consensus 170 Cq~f~fkpLs~eEI~~~L~~il~~Eg--I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 170 CLQFNLKSLTQDEIGTQLNHILTQEQ--LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred heEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 57899999999999999987663221 22234667889999999886443
No 58
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.55 E-value=9.2e-07 Score=99.62 Aligned_cols=172 Identities=21% Similarity=0.314 Sum_probs=102.1
Q ss_pred CCCCceeehhhHH---HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESIIK---EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~---~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
..++|+|.+..+. .+.+.+.. .....+.++|++|+||||||+.+++.....|.. +... ......+. ..
T Consensus 26 tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~---lna~---~~~i~dir-~~ 96 (725)
T PRK13341 26 TLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFSS---LNAV---LAGVKDLR-AE 96 (725)
T ss_pred cHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCccee---ehhh---hhhhHHHH-HH
Confidence 5667999998884 46666643 345678899999999999999999887655521 1111 00000000 11
Q ss_pred HHHHHHHh--cCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEE--EeCCHH--HHHhhcCCccccEEEecCCCHH
Q 006018 234 LNFERRRL--SRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVII--TTRDVQ--LLKNHRGSRVGHVFEVKELSYN 305 (664)
Q Consensus 234 l~~~~~~L--~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~Ili--TtR~~~--~~~~~~~~~~~~~~~l~~L~~~ 305 (664)
++...+.+ .+++.++||||++. ..+.+.+...+. .|..++| ||.+.. +..... .....+.+++|+.+
T Consensus 97 i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~--SR~~v~~l~pLs~e 171 (725)
T PRK13341 97 VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALV--SRSRLFRLKSLSDE 171 (725)
T ss_pred HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhh--ccccceecCCCCHH
Confidence 22222222 24577999999974 455666665443 3555555 344432 111111 12457999999999
Q ss_pred HHHHHHHHhhhC-----CCCCCccHHHHHHHHHHHhcCCchh
Q 006018 306 DSLTLFSRNAFG-----QNHPAAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 306 ea~~Lf~~~a~~-----~~~~~~~~~~~~~~i~~~~~glPLa 342 (664)
+..+++.+.+-. +.....-..+..+.|++.+.|..-.
T Consensus 172 di~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 172 DLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred HHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 999999876531 0111222345667788888876543
No 59
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.3e-06 Score=95.17 Aligned_cols=180 Identities=15% Similarity=0.108 Sum_probs=112.2
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC--cc--eeec-----------cchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE--GS--YFMQ-----------NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~--~~~~-----------~~~~ 221 (664)
...++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+..... .. -... ++.+
T Consensus 13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 56789999999999999996442 2467789999999999999999988532110 00 0000 0000
Q ss_pred hhhc-ccchhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHHHH-HhhcCCc
Q 006018 222 ESEK-VGGLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQLL-KNHRGSR 292 (664)
Q Consensus 222 ~~~~-~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~~~-~~~~~~~ 292 (664)
.... .... .+++.+.+. ..+++-++|+|+++.. ...+.++..+....++.++|++|.+..-. .... .
T Consensus 92 IDAAs~~~V--ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl--S 167 (702)
T PRK14960 92 IDAASRTKV--EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI--S 167 (702)
T ss_pred ecccccCCH--HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH--H
Confidence 0000 0011 112222221 2356678999999854 45677777766555667888877764322 1111 1
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhH
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 343 (664)
....+++.+++.++..+.+.+.+-... .....+....|++.++|.+..+
T Consensus 168 RCq~feFkpLs~eEI~k~L~~Il~kEg--I~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 168 RCLQFTLRPLAVDEITKHLGAILEKEQ--IAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred hhheeeccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 457899999999999999887763322 2223456777888888877444
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=98.54 E-value=9.9e-07 Score=91.10 Aligned_cols=178 Identities=15% Similarity=0.206 Sum_probs=104.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc-cCCcceeeccchhhhhcccchhHHhHH
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS-HFEGSYFMQNIRDESEKVGGLANIHLN 235 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~l~~~~l~ 235 (664)
.-.+++|.++.++.|..++..+ ..+.+.++|++|+||||+|+.+++.... .|...+.--+..+.. ....+++ .+.
T Consensus 11 ~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~-~~~~vr~-~i~ 86 (319)
T PLN03025 11 KLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR-GIDVVRN-KIK 86 (319)
T ss_pred CHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc-cHHHHHH-HHH
Confidence 5678899999999998887543 3455789999999999999999998633 332211110110000 0000000 011
Q ss_pred HHHHH---h-cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCccccEEEecCCCHHHHH
Q 006018 236 FERRR---L-SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSRVGHVFEVKELSYNDSL 308 (664)
Q Consensus 236 ~~~~~---L-~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~~~~~~l~~L~~~ea~ 308 (664)
...+. + .++.-++|||+++.. ...+.+...+....+.+++++++... .+..... .....+++++++.++..
T Consensus 87 ~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~--SRc~~i~f~~l~~~~l~ 164 (319)
T PLN03025 87 MFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQ--SRCAIVRFSRLSDQEIL 164 (319)
T ss_pred HHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHH--HhhhcccCCCCCHHHHH
Confidence 11110 1 134678999999754 33455554444445567777777542 2211111 13457899999999999
Q ss_pred HHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchh
Q 006018 309 TLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 309 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 342 (664)
+.+...+-..... -..+..+.+++.++|....
T Consensus 165 ~~L~~i~~~egi~--i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 165 GRLMKVVEAEKVP--YVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 9888776332221 1235677888888876533
No 61
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.54 E-value=4.7e-08 Score=104.66 Aligned_cols=164 Identities=30% Similarity=0.413 Sum_probs=106.4
Q ss_pred cCccCCCccCcC--cccEEEcCCCCCCcccc---cccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccc
Q 006018 478 ENTSLPTGINLD--SLKELYLGGCSNLKRFP---EISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSR 552 (664)
Q Consensus 478 ~~~~lp~~~~l~--~L~~L~l~~~~~~~~~p---~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 552 (664)
....+|+..... +|+.|++++|.. ..+| ....+|+.|++++|.+..+|...+.+++|+.|++++ +.+..+|..
T Consensus 127 ~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~ 204 (394)
T COG4886 127 NITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKISDLPPE 204 (394)
T ss_pred ccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-CccccCchh
Confidence 444566655543 677777777753 3332 223367777777777777777666777777777776 456666655
Q ss_pred cCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeee
Q 006018 553 LCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHAR 632 (664)
Q Consensus 553 ~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~ 632 (664)
+..+..|+.|.+++|. ....+..+.++.++..|.+.+|.+..+|..++.+++|+.|++++|.+ ..++. +.
T Consensus 205 ~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i-~~i~~--------~~ 274 (394)
T COG4886 205 IELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI-SSISS--------LG 274 (394)
T ss_pred hhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceeccccccc-ccccc--------cc
Confidence 5556667777777765 33455566777777777777777777677777777777777777543 33332 34
Q ss_pred CCCCCccccCCCcccccCCCC
Q 006018 633 HCTSLKTLSNSSTLLTRSSKH 653 (664)
Q Consensus 633 ~~~~L~~L~ls~N~l~~~~~~ 653 (664)
...+|+.|++++|.+....|.
T Consensus 275 ~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 275 SLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred ccCccCEEeccCccccccchh
Confidence 457778888888777655443
No 62
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=5.1e-07 Score=99.21 Aligned_cols=183 Identities=16% Similarity=0.169 Sum_probs=112.5
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc--CC---cc-----------eeeccch
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH--FE---GS-----------YFMQNIR 220 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--f~---~~-----------~~~~~~~ 220 (664)
...++||.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+... .. +. .|. ++.
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~-Dvi 91 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV-DYV 91 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCc-eEE
Confidence 66789999999999999986542 24566799999999999999999875321 00 00 000 000
Q ss_pred hhhhcccchhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHHHHHhhcCCcc
Q 006018 221 DESEKVGGLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQLLKNHRGSRV 293 (664)
Q Consensus 221 ~~~~~~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~ 293 (664)
+..... ...-.+++.+.+. ..++.-++|||+++.. ..++.|+..+.......++|+||.+..-... ...+.
T Consensus 92 EIDAas-~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~-TIrSR 169 (830)
T PRK07003 92 EMDAAS-NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV-TVLSR 169 (830)
T ss_pred Eecccc-cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc-hhhhh
Confidence 000000 0000112222222 1234568889999865 4477787777665667888888877543311 11124
Q ss_pred ccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCc-hhHHH
Q 006018 294 GHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVP-LALQV 345 (664)
Q Consensus 294 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~ 345 (664)
...+.+..++.++..+.+.+.+-... ..-..+..+.|++.++|.. -|+..
T Consensus 170 Cq~f~Fk~Ls~eeIv~~L~~Il~~Eg--I~id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 170 CLQFNLKQMPAGHIVSHLERILGEER--IAFEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred eEEEecCCcCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 67899999999999999988763222 1223456777888888755 34443
No 63
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.53 E-value=6.6e-07 Score=80.91 Aligned_cols=118 Identities=19% Similarity=0.144 Sum_probs=69.2
Q ss_pred eeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh----HHHH
Q 006018 162 VGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH----LNFE 237 (664)
Q Consensus 162 vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~----l~~~ 237 (664)
+|++..+..+...+... ..+.+.|+|.+|+|||++|+++++.+...-..++++. ..+............ ....
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 77 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGLVVAELFGHFLVRLLF 77 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhhHHHHHhhhhhHhHHH
Confidence 47888999998888542 3468899999999999999999998753322333332 222211111000000 0111
Q ss_pred HHHhcCceEEEEEecCCCH--H---HHHHHhccCCCC---CCCcEEEEEeCCH
Q 006018 238 RRRLSRMKVLIVFYDLTDL--K---QIDLLIGRLDGF---VPGSRVIITTRDV 282 (664)
Q Consensus 238 ~~~L~~~~~LlVlDdv~~~--~---~~~~l~~~~~~~---~~gs~IliTtR~~ 282 (664)
......++.++|+||++.. . .+.......... ..+..||+||...
T Consensus 78 ~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 78 ELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred HhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 2223456789999999864 2 223333333221 3677888888854
No 64
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.53 E-value=2.8e-07 Score=90.98 Aligned_cols=150 Identities=22% Similarity=0.356 Sum_probs=91.4
Q ss_pred CCCCceeehhhHHH---HHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHH-
Q 006018 157 NKDQLVGVESIIKE---IESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANI- 232 (664)
Q Consensus 157 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~- 232 (664)
...++||.+..+.+ |.+++ +.+..+.+.+||++|+||||||+.+...-+.+- ..|++ +.........+...
T Consensus 136 tL~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 136 TLDDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTNDVRDIF 210 (554)
T ss_pred hHHHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHHHHHHH
Confidence 45567777766544 34444 235678889999999999999999998755432 23332 11111111111111
Q ss_pred hHHHHHHHhcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEE--EeCCHHHHHhhcCCccccEEEecCCCHHHHH
Q 006018 233 HLNFERRRLSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVII--TTRDVQLLKNHRGSRVGHVFEVKELSYNDSL 308 (664)
Q Consensus 233 ~l~~~~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ili--TtR~~~~~~~~~~~~~~~~~~l~~L~~~ea~ 308 (664)
+-.+-...+..+|.+|++|.|... .|-+.+++. ...|.-++| ||.++..-..........++.++.|+.++-.
T Consensus 211 e~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~---VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~ 287 (554)
T KOG2028|consen 211 EQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPH---VENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVV 287 (554)
T ss_pred HHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccce---eccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHH
Confidence 111223346678999999999643 344555443 456877777 7887754221111124568999999999999
Q ss_pred HHHHHh
Q 006018 309 TLFSRN 314 (664)
Q Consensus 309 ~Lf~~~ 314 (664)
.++.+.
T Consensus 288 ~iL~ra 293 (554)
T KOG2028|consen 288 TILMRA 293 (554)
T ss_pred HHHHHH
Confidence 988773
No 65
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=1.5e-06 Score=89.47 Aligned_cols=171 Identities=16% Similarity=0.218 Sum_probs=110.8
Q ss_pred CCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc------cCCcceeeccchhhhhcccchhHH
Q 006018 159 DQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS------HFEGSYFMQNIRDESEKVGGLANI 232 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~l~~~ 232 (664)
.+++|.+..++++...+..+ .-.....++|+.|+||||+|+.+++.+.. +.+...|.. ... ....-.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~~-----~~i~v~ 76 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-INK-----KSIGVD 76 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-ccC-----CCCCHH
Confidence 46789999999999998643 23457789999999999999999987532 223222221 100 011111
Q ss_pred hHHHHHHH-----hcCceEEEEEecCC--CHHHHHHHhccCCCCCCCcEEEEEeCCHHHH-HhhcCCccccEEEecCCCH
Q 006018 233 HLNFERRR-----LSRMKVLIVFYDLT--DLKQIDLLIGRLDGFVPGSRVIITTRDVQLL-KNHRGSRVGHVFEVKELSY 304 (664)
Q Consensus 233 ~l~~~~~~-----L~~~~~LlVlDdv~--~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~-~~~~~~~~~~~~~l~~L~~ 304 (664)
++..+.+. ..+++-++|+|+++ +...++.++..+....+++.+|++|.+.+.. .... +....+++.+++.
T Consensus 77 ~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~--SRc~~~~~~~~~~ 154 (313)
T PRK05564 77 DIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK--SRCQIYKLNRLSK 154 (313)
T ss_pred HHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH--hhceeeeCCCcCH
Confidence 22222221 23345567777765 5567888988888777889999888766432 1111 1457899999999
Q ss_pred HHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 305 NDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 305 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
++..+.+..... ....+.++.++.+++|.|.-+.
T Consensus 155 ~~~~~~l~~~~~------~~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 155 EEIEKFISYKYN------DIKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHH
Confidence 999888865531 1113446778899999886554
No 66
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=8.6e-09 Score=98.85 Aligned_cols=125 Identities=25% Similarity=0.322 Sum_probs=101.3
Q ss_pred cCcccEEEcCCCCCCccccc---ccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEee
Q 006018 488 LDSLKELYLGGCSNLKRFPE---ISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNL 564 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~---~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 564 (664)
...|++|||++|.. +.+.+ ..+.++.|++++|.|..+.. +..+.+|+.|||++| .+..+...-..+-+.+.|+|
T Consensus 283 Wq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 283 WQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred Hhhhhhccccccch-hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeeh
Confidence 56788999999863 33433 33489999999999998765 888999999999985 56666656667889999999
Q ss_pred eCCCCCCccccccCCCCCCCEEEccCCCCcccc--ccccCCCCCCEEeecCCCCC
Q 006018 565 SGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIP--SSMKQLSKLSDLRLQNCKRL 617 (664)
Q Consensus 565 ~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l 617 (664)
++|. ++.+ +.++.+-+|..||+++|+|..+. .+|++|+.|+++.|.+|++.
T Consensus 360 a~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 9987 4444 46788899999999999999764 57999999999999998753
No 67
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=3.2e-06 Score=87.60 Aligned_cols=187 Identities=17% Similarity=0.175 Sum_probs=114.7
Q ss_pred CCCCCCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc----CCccee------------e
Q 006018 153 FPSDNKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH----FEGSYF------------M 216 (664)
Q Consensus 153 ~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~------------~ 216 (664)
.|. ....++|.+...+.+...+..+ .-...+.|+|+.|+||||+|..+++.+..+ +..... +
T Consensus 18 ~P~-~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 18 SPS-ENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCC-chhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 344 7788999999999999998654 234568899999999999999999885431 110000 0
Q ss_pred c-----cchhhh----hcc----cchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEE
Q 006018 217 Q-----NIRDES----EKV----GGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVI 276 (664)
Q Consensus 217 ~-----~~~~~~----~~~----~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Il 276 (664)
. ++.... .+. ..+.-.++..+.+.+ .+++-++|+|+++.. ...+.++..+........+|
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fi 175 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFI 175 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEE
Confidence 0 000000 000 011111233333333 345668999999754 44666766665544555655
Q ss_pred EEeCCH-HHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHh
Q 006018 277 ITTRDV-QLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLG 347 (664)
Q Consensus 277 iTtR~~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a 347 (664)
++|... .+..... +....+.+.+++.++..+++...... . . -..+.+..+++.++|.|.....+.
T Consensus 176 Lit~~~~~llptIr--SRc~~i~l~pl~~~~~~~~L~~~~~~--~-~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 176 LISHSSGRLLPTIR--SRCQPISLKPLDDDELKKALSHLGSS--Q-G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEECChhhccHHHH--hhccEEEecCCCHHHHHHHHHHhhcc--c-C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555444 2322222 24568999999999999999874321 1 1 224557789999999998665443
No 68
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.8e-08 Score=101.78 Aligned_cols=128 Identities=23% Similarity=0.228 Sum_probs=60.4
Q ss_pred cCcccEEEcCCCCCCc-----ccccccccccccccccccccccccc--cCCCCCCcEEeecCCCCCCc-cccccCCCCCC
Q 006018 488 LDSLKELYLGGCSNLK-----RFPEISCNIEDLDLKETAIEELPSS--IGNLSRLVDLDLTNCSGLKS-VSSRLCNLKSL 559 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~-----~~p~~~~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~~l~~-lp~~~~~l~~L 559 (664)
|++++.|||+.|-+.. .+-+.+++|+.|+++.|.+...-++ -..+.+|+.|.|+.|..... +-.....+|+|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 5556666666553211 1222333566666666555432221 12455566666666543321 11223345555
Q ss_pred CEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccc--ccccCCCCCCEEeecCCC
Q 006018 560 RRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIP--SSMKQLSKLSDLRLQNCK 615 (664)
Q Consensus 560 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp--~~i~~L~~L~~L~L~~~~ 615 (664)
+.|+|++|.....-......+..|+.|||++|.+...+ ..++.++.|..|+++.|.
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence 66666555422222222333445555666655555444 334555555555555543
No 69
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.1e-06 Score=95.52 Aligned_cols=182 Identities=12% Similarity=0.090 Sum_probs=112.4
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-----C-----Ccc-e----ee-----
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-----F-----EGS-Y----FM----- 216 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-----f-----~~~-~----~~----- 216 (664)
...++||.+..++.|.+.+..+. -...+.++|..|+||||+|+.+++.+... . .+. + .+
T Consensus 14 tFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 66789999999999999996542 24567899999999999999999885431 0 000 0 00
Q ss_pred ccchhhhhcccchhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhh
Q 006018 217 QNIRDESEKVGGLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNH 288 (664)
Q Consensus 217 ~~~~~~~~~~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~ 288 (664)
.++.+..... ...-.+++.+.+. ..++.-++|||+++.. ..++.|+..+......+++|++|.+. .+....
T Consensus 93 pDviEIdAas-~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTI 171 (700)
T PRK12323 93 VDYIEMDAAS-NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTV 171 (700)
T ss_pred CcceEecccc-cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHH
Confidence 0010100000 0000112222222 2345678999999754 56788888776655666766655543 333222
Q ss_pred cCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 289 RGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 289 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
. +.+..+.+..++.++..+.+.+.+-.... ....+..+.|++.++|.|....
T Consensus 172 r--SRCq~f~f~~ls~eei~~~L~~Il~~Egi--~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 172 L--SRCLQFNLKQMPPGHIVSHLDAILGEEGI--AHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred H--HHHHhcccCCCChHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 2 14668999999999999988876632221 2223556788999999886443
No 70
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.50 E-value=2.7e-06 Score=88.26 Aligned_cols=178 Identities=16% Similarity=0.164 Sum_probs=106.9
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-CCcceeec-cchhhhhcccchhHHhH
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-FEGSYFMQ-NIRDESEKVGGLANIHL 234 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~-~~~~~~~~~~~l~~~~l 234 (664)
.-.+++|+++.++.+..++..+ ..+.+.++|.+|+||||+|+.+++..... +.. .++. +..+. .........+
T Consensus 15 ~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~--~~~~~~~~~i 89 (319)
T PRK00440 15 TLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDE--RGIDVIRNKI 89 (319)
T ss_pred cHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccc--cchHHHHHHH
Confidence 5567999999999999998643 34457999999999999999999885432 211 1111 00000 0000000111
Q ss_pred HHHHHHh--c-CceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCccccEEEecCCCHHHHH
Q 006018 235 NFERRRL--S-RMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRVGHVFEVKELSYNDSL 308 (664)
Q Consensus 235 ~~~~~~L--~-~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~~l~~L~~~ea~ 308 (664)
..+.... . ..+-++++|+++.. +..+.+...+....+.+++|+++.... +..... .....+++++++.++..
T Consensus 90 ~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~--sr~~~~~~~~l~~~ei~ 167 (319)
T PRK00440 90 KEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ--SRCAVFRFSPLKKEAVA 167 (319)
T ss_pred HHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHH--HHhheeeeCCCCHHHHH
Confidence 1111111 1 33568999998754 334556555555556677887774321 111111 12346899999999999
Q ss_pred HHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhH
Q 006018 309 TLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 309 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 343 (664)
..+...+-.... .-..+.+..+++.++|.+.-+
T Consensus 168 ~~l~~~~~~~~~--~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 168 ERLRYIAENEGI--EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 988887743222 123456778888999887653
No 71
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.50 E-value=1.2e-06 Score=85.84 Aligned_cols=174 Identities=17% Similarity=0.179 Sum_probs=97.6
Q ss_pred CCCCce-eehhhH-HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhH
Q 006018 157 NKDQLV-GVESII-KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHL 234 (664)
Q Consensus 157 ~~~~~v-Gr~~~~-~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l 234 (664)
..++|+ |..... ..+.++.. .....+.+.|+|.+|+|||+||+.+++.....-....++.. .+.... +
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~-~~~~~~--------~ 85 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA-ASPLLA--------F 85 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh-HHhHHH--------H
Confidence 345555 544433 44555544 22335678999999999999999999875332223333331 111100 0
Q ss_pred HHHHHHhcCceEEEEEecCCCH--HHHHHHhccCCCC-CCCc-EEEEEeCCHHHHH--------hhcCCccccEEEecCC
Q 006018 235 NFERRRLSRMKVLIVFYDLTDL--KQIDLLIGRLDGF-VPGS-RVIITTRDVQLLK--------NHRGSRVGHVFEVKEL 302 (664)
Q Consensus 235 ~~~~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-~IliTtR~~~~~~--------~~~~~~~~~~~~l~~L 302 (664)
.. ....-++|+||++.. ...+.+...+... ..+. .||+|++...... .+. ....++++++
T Consensus 86 ----~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~---~~~~i~l~pl 157 (227)
T PRK08903 86 ----DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG---WGLVYELKPL 157 (227)
T ss_pred ----hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh---cCeEEEecCC
Confidence 11 123447889999643 2223333332211 1233 4666766432211 221 2368899999
Q ss_pred CHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhc
Q 006018 303 SYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYL 350 (664)
Q Consensus 303 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l 350 (664)
+.++-.+++...+-... ..-.++..+.+++.+.|++..+..+...+
T Consensus 158 ~~~~~~~~l~~~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 158 SDADKIAALKAAAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99887777766542211 22234667778888999998887665544
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.49 E-value=3.1e-07 Score=94.90 Aligned_cols=112 Identities=21% Similarity=0.525 Sum_probs=73.6
Q ss_pred cCcccEEEcCCCCCCccccccccccccccccc-ccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeC
Q 006018 488 LDSLKELYLGGCSNLKRFPEISCNIEDLDLKE-TAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSG 566 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~-~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~ 566 (664)
+.+++.|++++| .+..+|....+|+.|.+++ +.++.+|..+ ..+|+.|++++|..+..+|. +|+.|++++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~ 121 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKG 121 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCC
Confidence 678999999998 5778887767899999987 6677777655 36899999999877777774 466677765
Q ss_pred CC--CCCccccccCCCCCCCEEEccCCCCc---cccccccCC-CCCCEEeecCCCCC
Q 006018 567 CL--KLEKLPEEIGNLESLEYLNLAEKDFE---KIPSSMKQL-SKLSDLRLQNCKRL 617 (664)
Q Consensus 567 ~~--~~~~~p~~l~~l~~L~~L~l~~n~i~---~lp~~i~~L-~~L~~L~L~~~~~l 617 (664)
+. .++.+|.. |+.|.+.++... .+|. .| ++|++|++++|...
T Consensus 122 n~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 122 SATDSIKNVPNG------LTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI 169 (426)
T ss_pred CCCcccccCcch------Hhheecccccccccccccc---ccCCcccEEEecCCCcc
Confidence 43 24455543 445554322111 1110 12 35666666666644
No 73
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.49 E-value=3.6e-06 Score=88.77 Aligned_cols=185 Identities=14% Similarity=0.113 Sum_probs=112.6
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc----CCcceeeccchhhhh--------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH----FEGSYFMQNIRDESE-------- 224 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~-------- 224 (664)
.-.+++|.+..++.+.+.+..+. -...+.++|++|+||||+|+.+++.+... +..+--.........
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~ 90 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIE 90 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 55678999999999999886432 24567899999999999999999885421 111000000000000
Q ss_pred --cccchhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCccc
Q 006018 225 --KVGGLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRVG 294 (664)
Q Consensus 225 --~~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~ 294 (664)
........+++.+.+. ..+++-++|+|+++.. ...+.+...+....+.+.+|++|.+.. +...... ..
T Consensus 91 ~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s--r~ 168 (355)
T TIGR02397 91 IDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILS--RC 168 (355)
T ss_pred eeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh--he
Confidence 0000011112222222 2344568899998754 456777777665556677777776554 2222221 34
Q ss_pred cEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHH
Q 006018 295 HVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 295 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 346 (664)
..++..+++.++..+.+...+-..... -..+.+..+++.++|.|..+...
T Consensus 169 ~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 169 QRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHH
Confidence 578899999999999988776432221 22466778889999988766543
No 74
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.48 E-value=6.2e-08 Score=103.70 Aligned_cols=155 Identities=35% Similarity=0.491 Sum_probs=117.8
Q ss_pred CcCcccEEEcCCCCCCccccc---ccc-cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEE
Q 006018 487 NLDSLKELYLGGCSNLKRFPE---ISC-NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRL 562 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~---~~~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 562 (664)
.++.+..|++.+|... .+|. ... +|+.|++++|.+..+|..+..+++|+.|++++| .+..+|...+.++.|+.|
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred cccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 3567888888887643 3333 221 688888999988888878888889999999874 566777566688888889
Q ss_pred eeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccC
Q 006018 563 NLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSN 642 (664)
Q Consensus 563 ~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~l 642 (664)
++++|. +..+|..+..+..|++|.+++|.+...+..+.+++++..+.+.+|+.. .++. .+..+++|+.|++
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~-------~~~~l~~l~~L~~ 262 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPE-------SIGNLSNLETLDL 262 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccc-------hhccccccceecc
Confidence 998887 677787776777788888888877777778888888888887775543 3344 4667888999999
Q ss_pred CCcccccCCC
Q 006018 643 SSTLLTRSSK 652 (664)
Q Consensus 643 s~N~l~~~~~ 652 (664)
++|.++...+
T Consensus 263 s~n~i~~i~~ 272 (394)
T COG4886 263 SNNQISSISS 272 (394)
T ss_pred cccccccccc
Confidence 9999986553
No 75
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2.1e-06 Score=93.21 Aligned_cols=181 Identities=14% Similarity=0.109 Sum_probs=113.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc--cCCcceeecc------------chhh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS--HFEGSYFMQN------------IRDE 222 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~~------------~~~~ 222 (664)
...+++|.+..++.|...+..+. -...+.++|++|+||||+|+.+++.+.. .+...++.+. +.+.
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 56679999999999999886542 2456699999999999999999988642 2222233211 1110
Q ss_pred hhcccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCccc
Q 006018 223 SEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSRVG 294 (664)
Q Consensus 223 ~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~~ 294 (664)
... ....-.+++.+.+.+ .+++-++|+|+++.. +.++.+...+....+.+.+|++|... .+..... ...
T Consensus 91 ~~~-~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~--SRc 167 (504)
T PRK14963 91 DAA-SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL--SRT 167 (504)
T ss_pred ccc-ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh--cce
Confidence 000 000011122232222 345668999999754 45777777776555566666666543 3222222 135
Q ss_pred cEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhH
Q 006018 295 HVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 295 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 343 (664)
..+++.+++.++..+.+.+.+-..... ...+.+..|++.++|.+--+
T Consensus 168 ~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 168 QHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 689999999999999998877433221 23466788999999988544
No 76
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=2.1e-06 Score=90.96 Aligned_cols=179 Identities=15% Similarity=0.109 Sum_probs=110.0
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC-c--ceeec------------cchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE-G--SYFMQ------------NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-~--~~~~~------------~~~~ 221 (664)
...++||.+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+...-. . .+..+ ++.+
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviE 94 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLE 94 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCcccee
Confidence 66789999999999999886542 2345789999999999999999988543210 0 00000 0111
Q ss_pred hhh-cccchhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC-HHHHHhhcCCc
Q 006018 222 ESE-KVGGLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRD-VQLLKNHRGSR 292 (664)
Q Consensus 222 ~~~-~~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~-~~~~~~~~~~~ 292 (664)
... ...+.. +++.+.+. ..++.-++|+|+++.. +.++.++..+........+|++|.+ ..+......
T Consensus 95 Idaas~~gVd--~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S-- 170 (484)
T PRK14956 95 IDAASNRGIE--NIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS-- 170 (484)
T ss_pred echhhcccHH--HHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh--
Confidence 000 000111 12222222 2345678999999754 5678887777654445555555543 333322221
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchh
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 342 (664)
....|.+..++.++..+.+.+.+-..+ ..-..+....|++.++|.+.-
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Eg--i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIEN--VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCChHHH
Confidence 356799999999999998887763222 222346678899999998743
No 77
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=3.2e-06 Score=91.97 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=108.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC-----c-ce----eec-----cchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE-----G-SY----FMQ-----NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-----~-~~----~~~-----~~~~ 221 (664)
...++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+..... + .+ .+. ++.+
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 5678999999999999988643 22445789999999999999999987542110 0 00 000 0000
Q ss_pred hh-hcccchhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCc
Q 006018 222 ES-EKVGGLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSR 292 (664)
Q Consensus 222 ~~-~~~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~ 292 (664)
.. ....+.. +.+.+.+. ..+++-++|+|+++.. ...+.++..+......+.+|++|-+. .+..... .
T Consensus 93 idaas~~gvd--~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~--S 168 (546)
T PRK14957 93 IDAASRTGVE--ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTIL--S 168 (546)
T ss_pred eecccccCHH--HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHH--H
Confidence 00 0001111 12222221 2356679999999744 45777877776655566666555443 3332221 1
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL 341 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 341 (664)
....+++.+++.++..+.+...+-..+ .....+....|++.++|.+.
T Consensus 169 Rc~~~~f~~Ls~~eI~~~L~~il~~eg--i~~e~~Al~~Ia~~s~GdlR 215 (546)
T PRK14957 169 RCIQLHLKHISQADIKDQLKIILAKEN--INSDEQSLEYIAYHAKGSLR 215 (546)
T ss_pred heeeEEeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 467899999999998888877553221 22234556778888888664
No 78
>PRK04195 replication factor C large subunit; Provisional
Probab=98.45 E-value=6.4e-07 Score=97.79 Aligned_cols=178 Identities=15% Similarity=0.148 Sum_probs=105.0
Q ss_pred CCCCceeehhhHHHHHhhhcCC--CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhH
Q 006018 157 NKDQLVGVESIIKEIESQLLSG--STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHL 234 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l 234 (664)
...+++|.+..++++..++..- +...+.+.|+|++|+||||+|+.+++.+. |+...+ +..+.. ....+... +
T Consensus 12 ~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~iel--nasd~r-~~~~i~~~-i 85 (482)
T PRK04195 12 TLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIEL--NASDQR-TADVIERV-A 85 (482)
T ss_pred CHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEEE--cccccc-cHHHHHHH-H
Confidence 5667999999999999988532 12267899999999999999999999863 221111 111100 00000000 0
Q ss_pred HHH--HHHhc-CceEEEEEecCCCHH------HHHHHhccCCCCCCCcEEEEEeCCHHHHHhhcCCccccEEEecCCCHH
Q 006018 235 NFE--RRRLS-RMKVLIVFYDLTDLK------QIDLLIGRLDGFVPGSRVIITTRDVQLLKNHRGSRVGHVFEVKELSYN 305 (664)
Q Consensus 235 ~~~--~~~L~-~~~~LlVlDdv~~~~------~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~~l~~L~~~ 305 (664)
... ...+. .++-+||+|+++... .+..+...+. ..+..||+|+.+..-............+.+..++.+
T Consensus 86 ~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~ 163 (482)
T PRK04195 86 GEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTR 163 (482)
T ss_pred HHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHH
Confidence 000 01122 367899999997642 2455544443 233456666643221110000114567899999999
Q ss_pred HHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 306 DSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 306 ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
+....+...+...... -..+....|++.++|....+.
T Consensus 164 ~i~~~L~~i~~~egi~--i~~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 164 SIVPVLKRICRKEGIE--CDDEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 9999888776433222 224667888888888766554
No 79
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.43 E-value=3.3e-06 Score=89.36 Aligned_cols=204 Identities=17% Similarity=0.248 Sum_probs=111.2
Q ss_pred CCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
...++.|+++.++++.+.+.. +-...+-|.++|++|+|||++|+++++.....|-. ....+....
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~----v~~~~l~~~ 204 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIR----VVGSELVQK 204 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEE----eehHHHhHh
Confidence 445788999999999887632 11234568999999999999999999986543211 111111111
Q ss_pred ccchhHHhHHHHHHH-hcCceEEEEEecCCCHH-------------H---HHHHhccCCCC--CCCcEEEEEeCCHHHHH
Q 006018 226 VGGLANIHLNFERRR-LSRMKVLIVFYDLTDLK-------------Q---IDLLIGRLDGF--VPGSRVIITTRDVQLLK 286 (664)
Q Consensus 226 ~~~l~~~~l~~~~~~-L~~~~~LlVlDdv~~~~-------------~---~~~l~~~~~~~--~~gs~IliTtR~~~~~~ 286 (664)
..+-....+..+.+. -...+.+|+||+++... . +..+...+... ..+..||.||...+...
T Consensus 205 ~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld 284 (389)
T PRK03992 205 FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILD 284 (389)
T ss_pred hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCC
Confidence 111111112222222 23457899999997541 1 22232222221 23556777776544322
Q ss_pred hh--cCCccccEEEecCCCHHHHHHHHHHhhhCCCCC-CccHHHHHHHHHHHhcCCc-hhHHHHh---hhc--C----CC
Q 006018 287 NH--RGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHP-AAGFLELSNIVIKYANGVP-LALQVLG---SYL--K----GM 353 (664)
Q Consensus 287 ~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~glP-Lal~~~a---~~l--~----~~ 353 (664)
.. .....+..++++..+.++..++|..+..+.... ..++ ..+++.+.|.- --|+.+. +.. + ..
T Consensus 285 ~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i 360 (389)
T PRK03992 285 PAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGASGADLKAICTEAGMFAIRDDRTEV 360 (389)
T ss_pred HHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 11 111246689999999999999999876432222 1222 33444554432 2222221 111 1 13
Q ss_pred CHHHHHHHHHHhhcC
Q 006018 354 SEEEWESAVNKLKRM 368 (664)
Q Consensus 354 ~~~~w~~~l~~l~~~ 368 (664)
+.++...++.+....
T Consensus 361 ~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 361 TMEDFLKAIEKVMGK 375 (389)
T ss_pred CHHHHHHHHHHHhcc
Confidence 667777777765543
No 80
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.6e-08 Score=98.21 Aligned_cols=128 Identities=20% Similarity=0.245 Sum_probs=58.8
Q ss_pred cCcccEEEcCCCCCCccc----cccccccccccccccccc--ccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCE
Q 006018 488 LDSLKELYLGGCSNLKRF----PEISCNIEDLDLKETAIE--ELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRR 561 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~----p~~~~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 561 (664)
+++|+.|+++.|++.--. ...+.+|+.|.|+.|+++ .+-.....+++|..|+|.+|+....-......+..|+.
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 445555555555432111 112224555555555554 22223334555555555555432222223344555555
Q ss_pred EeeeCCCCCCccc--cccCCCCCCCEEEccCCCCccc--ccc-----ccCCCCCCEEeecCCCC
Q 006018 562 LNLSGCLKLEKLP--EEIGNLESLEYLNLAEKDFEKI--PSS-----MKQLSKLSDLRLQNCKR 616 (664)
Q Consensus 562 L~L~~~~~~~~~p--~~l~~l~~L~~L~l~~n~i~~l--p~~-----i~~L~~L~~L~L~~~~~ 616 (664)
|+|++|.+.. ++ ...+.++.|..|+++.|++.++ |+. ...+++|++|+++.|+.
T Consensus 251 LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 251 LDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence 5555555322 22 2345555555555555555532 322 23345555555555544
No 81
>PRK08727 hypothetical protein; Validated
Probab=98.43 E-value=7.9e-06 Score=80.18 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=97.0
Q ss_pred CCCceeehh-hHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHH
Q 006018 158 KDQLVGVES-IIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNF 236 (664)
Q Consensus 158 ~~~~vGr~~-~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~ 236 (664)
.++|++... .+..+..+.. + .....+.|+|.+|+|||+|++++++....+...+.|+. ..+... .+..
T Consensus 18 f~~f~~~~~n~~~~~~~~~~-~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~~~~--------~~~~ 86 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAA-G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQAAAG--------RLRD 86 (233)
T ss_pred hhhccCCcHHHHHHHHHHHh-c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHHhhh--------hHHH
Confidence 345665543 3333333332 1 22356999999999999999999998666544445543 211110 1111
Q ss_pred HHHHhcCceEEEEEecCCCHH---HH-HHHhccCCC-CCCCcEEEEEeCCH---------HHHHhhcCCccccEEEecCC
Q 006018 237 ERRRLSRMKVLIVFYDLTDLK---QI-DLLIGRLDG-FVPGSRVIITTRDV---------QLLKNHRGSRVGHVFEVKEL 302 (664)
Q Consensus 237 ~~~~L~~~~~LlVlDdv~~~~---~~-~~l~~~~~~-~~~gs~IliTtR~~---------~~~~~~~~~~~~~~~~l~~L 302 (664)
..+.+. ..-+||+||++... .+ +.+...+.. ...|..||+||+.. ++..++. ....++++++
T Consensus 87 ~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~---~~~~~~l~~~ 162 (233)
T PRK08727 87 ALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLA---QCIRIGLPVL 162 (233)
T ss_pred HHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHh---cCceEEecCC
Confidence 122222 33589999997431 12 222222211 12466799999843 2233332 3568999999
Q ss_pred CHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhH
Q 006018 303 SYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 303 ~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 343 (664)
+.++-.+++.+++.... ..-..+....+++.++|-.-.+
T Consensus 163 ~~e~~~~iL~~~a~~~~--l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 163 DDVARAAVLRERAQRRG--LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhCCCCHHHH
Confidence 99999999998774322 2223456667777776554443
No 82
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.42 E-value=3.8e-06 Score=81.45 Aligned_cols=158 Identities=17% Similarity=0.215 Sum_probs=88.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCc-ceeeccchhhhhccc-chhHHhHHHHHHHhcCceEEEEEecCCCH--
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEG-SYFMQNIRDESEKVG-GLANIHLNFERRRLSRMKVLIVFYDLTDL-- 256 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~-~~~~~~~~~~~~~~~-~l~~~~l~~~~~~L~~~~~LlVlDdv~~~-- 256 (664)
....+.|+|..|+|||.|.+++++.+....+. .+......+...... .+.+.+...+++.++. -=+|++||++..
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRS-ADLLIIDDIQFLAG 111 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCT-SSEEEEETGGGGTT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhc-CCEEEEecchhhcC
Confidence 35678999999999999999999997765443 222222222221111 1122234455666664 346788998643
Q ss_pred -HHHH-HHhccCCC-CCCCcEEEEEeCCH---------HHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCcc
Q 006018 257 -KQID-LLIGRLDG-FVPGSRVIITTRDV---------QLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAG 324 (664)
Q Consensus 257 -~~~~-~l~~~~~~-~~~gs~IliTtR~~---------~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 324 (664)
..|+ .+...+.. ...|.+||+|++.. ++..++. ..-.+++++++.++..+++.+.+-...-. -
T Consensus 112 ~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~---~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l 186 (219)
T PF00308_consen 112 KQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS---WGLVVELQPPDDEDRRRILQKKAKERGIE--L 186 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH---CSEEEEE----HHHHHHHHHHHHHHTT----S
T ss_pred chHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh---hcchhhcCCCCHHHHHHHHHHHHHHhCCC--C
Confidence 2222 22222111 13467899999643 3444444 56689999999999999999887432222 2
Q ss_pred HHHHHHHHHHHhcCCchhHH
Q 006018 325 FLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 325 ~~~~~~~i~~~~~glPLal~ 344 (664)
.+++++-+++.+.+..-.|.
T Consensus 187 ~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 187 PEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp -HHHHHHHHHHTTSSHHHHH
T ss_pred cHHHHHHHHHhhcCCHHHHH
Confidence 34566666666655444443
No 83
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=6.1e-06 Score=86.70 Aligned_cols=180 Identities=13% Similarity=0.103 Sum_probs=109.2
Q ss_pred CCCceeehhhHHHHHhhhcCCCC--------cceEEEEecCCCCChHHHHHHHHHHhhccCC----c-ce-----eec--
Q 006018 158 KDQLVGVESIIKEIESQLLSGST--------EFNTVGIWGIGGIGKTTIASAIYSNISSHFE----G-SY-----FMQ-- 217 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~----~-~~-----~~~-- 217 (664)
-.+++|.+..++.|.+.+..+.. -...+.++|++|+|||++|+.+++.+-.... + .+ +..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35689999999999999875431 2456889999999999999999987433211 0 00 000
Q ss_pred --cchhhhhcccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHHh
Q 006018 218 --NIRDESEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKN 287 (664)
Q Consensus 218 --~~~~~~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~ 287 (664)
++...........-.+++.+.+.+ .+++-++|+|+++.. ...+.++..+....++..+|++|.+.. +...
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpT 163 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPT 163 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHH
Confidence 000000000011111233333332 234558888999764 345667666665566777777776643 3322
Q ss_pred hcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHH
Q 006018 288 HRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 288 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 346 (664)
.. +....+.+..++.++..+.+.... .. ..+.+..++..++|.|.....+
T Consensus 164 Ir--SRc~~i~f~~~~~~~i~~~L~~~~---~~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 164 IR--SRCRHVALRTPSVEAVAEVLVRRD---GV----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred HH--hhCeEEECCCCCHHHHHHHHHHhc---CC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 22 145789999999999998887432 11 1355778899999998654433
No 84
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=2.3e-06 Score=94.12 Aligned_cols=181 Identities=13% Similarity=0.121 Sum_probs=109.2
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC-----cc-----------eeeccch
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE-----GS-----------YFMQNIR 220 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~-----------~~~~~~~ 220 (664)
...++||.+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+...-. +. .+. ++.
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~-Dvl 91 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYV-DLL 91 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCcc-ceE
Confidence 6678999999999999998753 22456899999999999999999887432110 00 000 000
Q ss_pred hhhhcccchhHHhHHHHHHH-----hcCceEEEEEecCCCHH--HHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCc
Q 006018 221 DESEKVGGLANIHLNFERRR-----LSRMKVLIVFYDLTDLK--QIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSR 292 (664)
Q Consensus 221 ~~~~~~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~ 292 (664)
+..... .....+++.+.+. ..+++-++|+|+++... ..+.++..+......+++|++|.+.. +..... .
T Consensus 92 EidaAs-~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIr--S 168 (709)
T PRK08691 92 EIDAAS-NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVL--S 168 (709)
T ss_pred EEeccc-cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHH--H
Confidence 000000 0000112222111 23456789999997653 35666666654445667777775442 221111 1
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
....+.+..++.++..+.+.+.+-.... .-..+....|++.++|.+.-+.
T Consensus 169 RC~~f~f~~Ls~eeI~~~L~~Il~kEgi--~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 169 RCLQFVLRNMTAQQVADHLAHVLDSEKI--AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred HHhhhhcCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHhCCCHHHHH
Confidence 3456888899999999998877633222 2234567788999988875443
No 85
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=4.4e-06 Score=88.83 Aligned_cols=182 Identities=13% Similarity=0.167 Sum_probs=110.4
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc--CCcceee----------ccchhhh-
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH--FEGSYFM----------QNIRDES- 223 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~----------~~~~~~~- 223 (664)
...+++|.+..++.|.+.+..+. -...+.++|++|+||||+|+.+++.+... ++...|. ...+...
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 56789999999999999886432 23458899999999999999999886431 1000000 0000000
Q ss_pred ---------hcccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC-HHHHH
Q 006018 224 ---------EKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRD-VQLLK 286 (664)
Q Consensus 224 ---------~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~-~~~~~ 286 (664)
.......-.++..+.+.+ .+.+-++|+|+++.. +.++.+...+....+.+.+|++|.+ ..+..
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 000000011233333333 345668899999754 4677777777665667776665543 33332
Q ss_pred hhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhH
Q 006018 287 NHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 287 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 343 (664)
... .....+++.+++.++..+.+...+-... ..-..+.+..+++.++|.+--+
T Consensus 173 tl~--sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 173 TIA--SRCQRFNFKRIPLEEIQQQLQGICEAEG--ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHH--HHHHHhhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHH
Confidence 221 1346789999999999888877652211 2233466788999999977533
No 86
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.39 E-value=9.1e-07 Score=91.46 Aligned_cols=119 Identities=24% Similarity=0.358 Sum_probs=79.1
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCcccccccc-cccccccccc-cccccccccCCCCCCcEEeecCC--CCCCcccccc
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEISC-NIEDLDLKET-AIEELPSSIGNLSRLVDLDLTNC--SGLKSVSSRL 553 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~-~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~--~~l~~lp~~~ 553 (664)
...++|.. ..+|+.|++++|..+..+|..++ +|+.|++++| .+..+|++ |+.|++.++ ..+..+|
T Consensus 63 ~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n~~~~L~~LP--- 131 (426)
T PRK15386 63 DIESLPVL--PNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPES------VRSLEIKGSATDSIKNVP--- 131 (426)
T ss_pred CCcccCCC--CCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccc------cceEEeCCCCCcccccCc---
Confidence 45566621 34699999999998888887555 8999999998 77788764 566666543 2345565
Q ss_pred CCCCCCCEEeeeCCCCC--CccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCC
Q 006018 554 CNLKSLRRLNLSGCLKL--EKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNC 614 (664)
Q Consensus 554 ~~l~~L~~L~L~~~~~~--~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~ 614 (664)
++|+.|.+.++... ..+|..+ ..+|++|++++|....+|..+- .+|+.|+++.|
T Consensus 132 ---ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 132 ---NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred ---chHhheecccccccccccccccc--CCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 34667776543311 1112111 1579999999888776665443 48889998775
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=4e-06 Score=92.60 Aligned_cols=182 Identities=13% Similarity=0.061 Sum_probs=111.5
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC-----Cc-ceeec---------cchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF-----EG-SYFMQ---------NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-----~~-~~~~~---------~~~~ 221 (664)
...++||.+..++.|...+..+. -...+.++|..|+||||+|+.+++.+.... ++ .|-.+ ++.+
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 66789999999999999886542 234568999999999999999998854321 00 00000 0000
Q ss_pred hhhcccchhHHhHHHHHHH-----hcCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCcc
Q 006018 222 ESEKVGGLANIHLNFERRR-----LSRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSRV 293 (664)
Q Consensus 222 ~~~~~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~ 293 (664)
..... ...-.+++.+.+. ..+++-++|+|+++. ....+.|+..+.......++|++|.+. .+..... ..
T Consensus 93 idaas-~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~--SR 169 (647)
T PRK07994 93 IDAAS-RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL--SR 169 (647)
T ss_pred ecccc-cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHH--hh
Confidence 00000 0001112222222 345667899999974 456777877776555566666655543 3332222 13
Q ss_pred ccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 294 GHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 294 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
...|.+..++.++..+.+.+.+-... .....+....|++.++|.+.-..
T Consensus 170 C~~~~f~~Ls~~ei~~~L~~il~~e~--i~~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 170 CLQFHLKALDVEQIRQQLEHILQAEQ--IPFEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred heEeeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHH
Confidence 67899999999999999887652221 12234556778899999876443
No 88
>PRK09087 hypothetical protein; Validated
Probab=98.38 E-value=1.1e-05 Score=78.45 Aligned_cols=138 Identities=14% Similarity=0.085 Sum_probs=85.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHhcCceEEEEEecCCC----HH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRLSRMKVLIVFYDLTD----LK 257 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~----~~ 257 (664)
.+.+.|||.+|+|||+|++.+++.... .++.. ... .. .....+.+ -+|++||++. .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-----~~i~~-~~~-------~~----~~~~~~~~--~~l~iDDi~~~~~~~~ 104 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-----LLIHP-NEI-------GS----DAANAAAE--GPVLIEDIDAGGFDET 104 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-----EEecH-HHc-------ch----HHHHhhhc--CeEEEECCCCCCCCHH
Confidence 467899999999999999988876422 23321 000 00 00111111 3788899953 23
Q ss_pred HHHHHhccCCCCCCCcEEEEEeCC---------HHHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHH
Q 006018 258 QIDLLIGRLDGFVPGSRVIITTRD---------VQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLEL 328 (664)
Q Consensus 258 ~~~~l~~~~~~~~~gs~IliTtR~---------~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 328 (664)
.+-.+..... ..|..||+|++. +++..++. ...++++++++.++-.+++.+++-... ..-.+++
T Consensus 105 ~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~---~gl~~~l~~pd~e~~~~iL~~~~~~~~--~~l~~ev 177 (226)
T PRK09087 105 GLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLK---AATVVEIGEPDDALLSQVIFKLFADRQ--LYVDPHV 177 (226)
T ss_pred HHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHh---CCceeecCCCCHHHHHHHHHHHHHHcC--CCCCHHH
Confidence 3333332222 346789998873 34444444 567899999999999999998874321 2223467
Q ss_pred HHHHHHHhcCCchhHHH
Q 006018 329 SNIVIKYANGVPLALQV 345 (664)
Q Consensus 329 ~~~i~~~~~glPLal~~ 345 (664)
..-|++.+.|..-++..
T Consensus 178 ~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 178 VYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHhhhhHHHHHH
Confidence 77788888877766664
No 89
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.38 E-value=8.7e-06 Score=79.99 Aligned_cols=169 Identities=12% Similarity=0.199 Sum_probs=96.9
Q ss_pred CCce-eeh-hhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHH
Q 006018 159 DQLV-GVE-SIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNF 236 (664)
Q Consensus 159 ~~~v-Gr~-~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~ 236 (664)
++|+ |-. ..+..+.++... ...+.+.|+|++|+|||+|++.+++.....-..+.|+. ....... ...
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~~~--------~~~ 90 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRAWF--------VPE 90 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHhhh--------hHH
Confidence 3444 633 334445554432 23457899999999999999999998665433334443 2111000 011
Q ss_pred HHHHhcCceEEEEEecCCCH---HHHHH-HhccCCCC-CCC-cEEEEEeCCH---------HHHHhhcCCccccEEEecC
Q 006018 237 ERRRLSRMKVLIVFYDLTDL---KQIDL-LIGRLDGF-VPG-SRVIITTRDV---------QLLKNHRGSRVGHVFEVKE 301 (664)
Q Consensus 237 ~~~~L~~~~~LlVlDdv~~~---~~~~~-l~~~~~~~-~~g-s~IliTtR~~---------~~~~~~~~~~~~~~~~l~~ 301 (664)
+.+.+.+ --++++||+... .+|+. +...+... ..| .++|+||+.. ++..++. ...++++++
T Consensus 91 ~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~---~g~~~~l~~ 166 (235)
T PRK08084 91 VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLD---WGQIYKLQP 166 (235)
T ss_pred HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHh---CCceeeecC
Confidence 1222222 247889999653 23322 21222111 123 4799999754 3444444 457899999
Q ss_pred CCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 302 LSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 302 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
++.++-.+.+.+++.... ..-.+++..-+++.+.|..-++.
T Consensus 167 ~~~~~~~~~l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 167 LSDEEKLQALQLRARLRG--FELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred CCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHH
Confidence 999999999988664321 22234667778887776655544
No 90
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=5.8e-06 Score=89.35 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=111.4
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC--------Ccceeec-----------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF--------EGSYFMQ----------- 217 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f--------~~~~~~~----------- 217 (664)
...++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+...- ..+-.-.
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 6678999999999998877543 2245788999999999999999999853211 1100000
Q ss_pred cchhhhhcccchhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEE-EeCCHHHHHhhc
Q 006018 218 NIRDESEKVGGLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVII-TTRDVQLLKNHR 289 (664)
Q Consensus 218 ~~~~~~~~~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ili-TtR~~~~~~~~~ 289 (664)
++.+.... ......+++.+.+. ..+++-++|+|+++.. ..++.+...+....+.+.+|+ ||+...+.....
T Consensus 98 Dv~eidaa-s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~ 176 (507)
T PRK06645 98 DIIEIDAA-SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATII 176 (507)
T ss_pred cEEEeecc-CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHH
Confidence 01110000 00011122222222 2356678999999864 557788777765555666655 444444433332
Q ss_pred CCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhH
Q 006018 290 GSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 290 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 343 (664)
. ....+++.+++.++..+.+...+-.... ....+....|++.++|.+.-+
T Consensus 177 S--Rc~~~ef~~ls~~el~~~L~~i~~~egi--~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 177 S--RCQRYDLRRLSFEEIFKLLEYITKQENL--KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred h--cceEEEccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 1 3567999999999999999888743222 223455677888888876433
No 91
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=4.7e-06 Score=89.70 Aligned_cols=185 Identities=17% Similarity=0.151 Sum_probs=108.4
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc----CCcceeec-----------cchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH----FEGSYFMQ-----------NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~-----------~~~~ 221 (664)
...++||.+..++.|...+..+. -...+.++|++|+||||+|+.+++.+... +..+.-.. ++.+
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 56789999999888888886432 23457899999999999999999875321 11000000 0000
Q ss_pred hhhc-ccchhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCc
Q 006018 222 ESEK-VGGLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSR 292 (664)
Q Consensus 222 ~~~~-~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~ 292 (664)
.... ..+.. +++.+.+. ..+++-++|+|+++.. ++.+.++..+....+...+|++|.++ .+......
T Consensus 91 l~aa~~~gid--~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~S-- 166 (472)
T PRK14962 91 LDAASNRGID--EIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIIS-- 166 (472)
T ss_pred EeCcccCCHH--HHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhc--
Confidence 0000 00111 12222222 2345679999999755 34566766665544445555455443 33222221
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCC-chhHHHHhh
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGV-PLALQVLGS 348 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~a~ 348 (664)
....+++.+++.++....+...+..... .-..+....|++.++|- +.|+..+..
T Consensus 167 R~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 167 RCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4568999999999999988887643221 22345667788877544 566555544
No 92
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=3.4e-07 Score=69.11 Aligned_cols=58 Identities=31% Similarity=0.521 Sum_probs=35.2
Q ss_pred CCCCEEeeeCCCCCCccc-cccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCC
Q 006018 557 KSLRRLNLSGCLKLEKLP-EEIGNLESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNCK 615 (664)
Q Consensus 557 ~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~~ 615 (664)
++|+.|++++|.+ ..+| ..+.++++|++|++++|.++.+|+ .|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l-~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKL-TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTE-SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCC-CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3566666666653 3333 455666666666666666666653 45666666666666664
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=98.34 E-value=1.3e-05 Score=78.58 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=88.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHhcCceEEEEEecCCCH---HH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRLSRMKVLIVFYDLTDL---KQ 258 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~---~~ 258 (664)
...+.|+|..|+|||.|++++++.+..+-..++|+. ..+.... ...+.+.+.+-. ++|+||+... .+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~~~--------~~~~~~~~~~~d-~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELLDR--------GPELLDNLEQYE-LVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHHhh--------hHHHHHhhhhCC-EEEEechhhhcCChH
Confidence 357899999999999999999988665434455554 2222111 112333343333 6788999632 23
Q ss_pred HH-HHhccCCC-CCCCcEEEEEeCCHH---------HHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHH
Q 006018 259 ID-LLIGRLDG-FVPGSRVIITTRDVQ---------LLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLE 327 (664)
Q Consensus 259 ~~-~l~~~~~~-~~~gs~IliTtR~~~---------~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 327 (664)
|+ .+...+.. ...|..||+|++... +..++. ...++++++++.++-.+.+..++....- .-.++
T Consensus 115 ~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~---~gl~~~l~~~~~e~~~~il~~ka~~~~~--~l~~e 189 (234)
T PRK05642 115 WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLT---LALVFQMRGLSDEDKLRALQLRASRRGL--HLTDE 189 (234)
T ss_pred HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHh---cCeeeecCCCCHHHHHHHHHHHHHHcCC--CCCHH
Confidence 32 23333321 134678899887432 222222 3467899999999999999866643221 12246
Q ss_pred HHHHHHHHhcCCchhHH
Q 006018 328 LSNIVIKYANGVPLALQ 344 (664)
Q Consensus 328 ~~~~i~~~~~glPLal~ 344 (664)
+..-+++.+.|-.-.+.
T Consensus 190 v~~~L~~~~~~d~r~l~ 206 (234)
T PRK05642 190 VGHFILTRGTRSMSALF 206 (234)
T ss_pred HHHHHHHhcCCCHHHHH
Confidence 66677777766655444
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=8.1e-06 Score=90.02 Aligned_cols=182 Identities=10% Similarity=0.103 Sum_probs=109.5
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC----C------c-ce----eec----
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF----E------G-SY----FMQ---- 217 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f----~------~-~~----~~~---- 217 (664)
...++||-+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+...- . + .| .+.
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 6678999999999999998654 2345678999999999999999988753210 0 0 00 000
Q ss_pred -cchhhhhcccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC-HHHHHhh
Q 006018 218 -NIRDESEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRD-VQLLKNH 288 (664)
Q Consensus 218 -~~~~~~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~-~~~~~~~ 288 (664)
++.+..... ...-.+++.+.+.. .++.-++|||+++.. +.++.++..+......+++|++|.+ ..+....
T Consensus 93 ~D~~eldaas-~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TI 171 (618)
T PRK14951 93 VDYTELDAAS-NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTV 171 (618)
T ss_pred CceeecCccc-ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHH
Confidence 010100000 00001122222221 234558899999754 5577787777665556677666544 3333222
Q ss_pred cCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 289 RGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 289 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
. .....++++.++.++..+.+.+.+-..+. ....+....|++.++|.+.-+.
T Consensus 172 l--SRc~~~~f~~Ls~eei~~~L~~i~~~egi--~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 172 L--SRCLQFNLRPMAPETVLEHLTQVLAAENV--PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred H--HhceeeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 1 14578999999999999998877633222 1223566778888888764443
No 95
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=8.7e-06 Score=87.30 Aligned_cols=180 Identities=13% Similarity=0.138 Sum_probs=110.8
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCc------ce---------eeccchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEG------SY---------FMQNIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~------~~---------~~~~~~~ 221 (664)
...++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+...+.. .+ .-.++.+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 66789999999999998886442 24478899999999999999998864221110 00 0000111
Q ss_pred hhhcccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC-HHHHHhhcCCcc
Q 006018 222 ESEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRD-VQLLKNHRGSRV 293 (664)
Q Consensus 222 ~~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~-~~~~~~~~~~~~ 293 (664)
.... ....-.+++.+.+.. .+++-++|+|+++.. +..+.++..+....+.+++|++|.+ ..+...... .
T Consensus 90 idaa-s~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~S--R 166 (491)
T PRK14964 90 IDAA-SNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIIS--R 166 (491)
T ss_pred Eecc-cCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHH--h
Confidence 0000 000011122222222 345668999999743 4577787777766667777766643 344332221 4
Q ss_pred ccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchh
Q 006018 294 GHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 294 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 342 (664)
...+++..++.++..+.+...+...+. .-..+..+.|++.++|.+..
T Consensus 167 c~~~~f~~l~~~el~~~L~~ia~~Egi--~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 167 CQRFDLQKIPTDKLVEHLVDIAKKENI--EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred heeeecccccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 678999999999999998887743222 22345677888888887753
No 96
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.31 E-value=7.7e-06 Score=93.88 Aligned_cols=168 Identities=18% Similarity=0.204 Sum_probs=99.2
Q ss_pred hHhhhhhccccccccCCCCCCCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC------
Q 006018 137 LIEGNVNDISKKLSDLFPSDNKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF------ 210 (664)
Q Consensus 137 ~~~~~~~~~~~~l~~~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------ 210 (664)
.+++...+...+..+ . .-+.++||+.+++++...|... ...-+.++|++|+|||++|+.+++++...-
T Consensus 164 ~l~~~~~~l~~~~r~---~-~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 164 ALEKYTVDLTEKAKN---G-KIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred HHHHHhhhHHHHHhc---C-CCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 455555555444432 2 4457999999999999888543 234567999999999999999999864421
Q ss_pred Ccceeeccchhhhhcc--cchhHHhHHHHHHHhc-CceEEEEEecCCCH-----------HHHHHHhccCCCCCCC-cEE
Q 006018 211 EGSYFMQNIRDESEKV--GGLANIHLNFERRRLS-RMKVLIVFYDLTDL-----------KQIDLLIGRLDGFVPG-SRV 275 (664)
Q Consensus 211 ~~~~~~~~~~~~~~~~--~~l~~~~l~~~~~~L~-~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g-s~I 275 (664)
...+|..++....... .+-.+..+..+.+.+. ..+.+|++|+++.. +..+.+.+.+. .| -++
T Consensus 238 ~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~ 314 (731)
T TIGR02639 238 NAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRC 314 (731)
T ss_pred CCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEE
Confidence 2334443433333211 1112223444444443 46899999998633 22344444443 33 244
Q ss_pred EEEeCCHHH----H--HhhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 276 IITTRDVQL----L--KNHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 276 liTtR~~~~----~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
|-+|...+. . .... .....++++.++.++..+++....
T Consensus 315 IgaTt~~e~~~~~~~d~al~--rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 315 IGSTTYEEYKNHFEKDRALS--RRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred EEecCHHHHHHHhhhhHHHH--HhCceEEeCCCCHHHHHHHHHHHH
Confidence 444443221 1 0111 123579999999999999998654
No 97
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.30 E-value=1.2e-05 Score=80.48 Aligned_cols=154 Identities=14% Similarity=0.116 Sum_probs=81.8
Q ss_pred CceeehhhHHHHHhhhc---C----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccC--Ccceeec-cchhhh
Q 006018 160 QLVGVESIIKEIESQLL---S----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF--EGSYFMQ-NIRDES 223 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~---~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~-~~~~~~ 223 (664)
.++|.+...++|.+... . ..+....+.++|++|+||||+|+.+++.+...- ....++. ...+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 47888777666653321 0 112355688999999999999999988753211 1111221 111111
Q ss_pred hcccchhHHhHHHHHHHhcCceEEEEEecCCC----------HHHHHHHhccCCCCCCCcEEEEEeCCHHHHH------h
Q 006018 224 EKVGGLANIHLNFERRRLSRMKVLIVFYDLTD----------LKQIDLLIGRLDGFVPGSRVIITTRDVQLLK------N 287 (664)
Q Consensus 224 ~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~----------~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~------~ 287 (664)
....+-.......+.+.. ...+|++|+++. .+..+.+...+........+++++...+... .
T Consensus 87 ~~~~g~~~~~~~~~~~~a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~ 164 (261)
T TIGR02881 87 GEYIGHTAQKTREVIKKA--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPG 164 (261)
T ss_pred hhhccchHHHHHHHHHhc--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChH
Confidence 110000011111111111 235889999975 2345666665544433445555554322210 1
Q ss_pred hcCCccccEEEecCCCHHHHHHHHHHhhh
Q 006018 288 HRGSRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 288 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
.. ......+.++.++.++-.+++.+.+.
T Consensus 165 L~-sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 165 LR-SRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred HH-hccceEEEECCCCHHHHHHHHHHHHH
Confidence 11 11345689999999999999987764
No 98
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=7.6e-06 Score=89.14 Aligned_cols=178 Identities=16% Similarity=0.111 Sum_probs=106.0
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-C---C--cceee---------ccchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-F---E--GSYFM---------QNIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f---~--~~~~~---------~~~~~ 221 (664)
...+++|++..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+... . + ..+-. .++.+
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~Diie 92 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVE 92 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEE
Confidence 6678999999999999988644 224568899999999999999999885321 0 0 00000 00000
Q ss_pred hhhc-ccchhHHhHHHHHHH-----hcCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCc
Q 006018 222 ESEK-VGGLANIHLNFERRR-----LSRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSR 292 (664)
Q Consensus 222 ~~~~-~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~ 292 (664)
.... ..+.. +++.+.+. ..+++-++|+|+++. ...++.|+..+....+.+.+|++|... .+......
T Consensus 93 Idaas~igVd--~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~S-- 168 (605)
T PRK05896 93 LDAASNNGVD--EIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIIS-- 168 (605)
T ss_pred eccccccCHH--HHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHh--
Confidence 0000 00111 12222221 123344699999875 345677777665544556665555433 33322221
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL 341 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 341 (664)
....+++.+++.++....+...+-.... .-..+.+..+++.++|.+.
T Consensus 169 Rcq~ieF~~Ls~~eL~~~L~~il~kegi--~Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 169 RCQRYNFKKLNNSELQELLKSIAKKEKI--KIEDNAIDKIADLADGSLR 215 (605)
T ss_pred hhhhcccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHH
Confidence 3568999999999999888876632221 1223557788889988664
No 99
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.29 E-value=6.6e-06 Score=88.52 Aligned_cols=162 Identities=20% Similarity=0.297 Sum_probs=93.4
Q ss_pred CCCCCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccC-----Ccceeec
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF-----EGSYFMQ 217 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~ 217 (664)
|...-.++.|.+..++++...+.. +-...+-+.++|++|+|||++|+++++.+...+ ....|+.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 433456688899999998877532 112245689999999999999999999865542 1233332
Q ss_pred c-chhhhhcccchhHHhHHHHHHHh-----cCceEEEEEecCCCHH---------H-----HHHHhccCCCCC--CCcEE
Q 006018 218 N-IRDESEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDLK---------Q-----IDLLIGRLDGFV--PGSRV 275 (664)
Q Consensus 218 ~-~~~~~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~~---------~-----~~~l~~~~~~~~--~gs~I 275 (664)
. ..+......+-.+..+..+.+.. .+++++|+||+++..- + +..++..+.... .+..|
T Consensus 257 v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViV 336 (512)
T TIGR03689 257 IKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIV 336 (512)
T ss_pred ccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEE
Confidence 1 11111111111111222222222 2468999999997431 1 224444333322 33445
Q ss_pred EEEeCCHHHHHhh--cCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 276 IITTRDVQLLKNH--RGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 276 liTtR~~~~~~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
|.||-..+..... .....+..++++..+.++..++|..+.
T Consensus 337 I~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 337 IGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred EeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 5566544332211 111256679999999999999998886
No 100
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.28 E-value=1.7e-05 Score=75.29 Aligned_cols=156 Identities=19% Similarity=0.190 Sum_probs=95.5
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc---------------------CCcceeeccchhhhhcccc
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH---------------------FEGSYFMQNIRDESEKVGG 228 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~~ 228 (664)
.+.+.+..+ .-...+.++|+.|+|||++|+.+.+.+... ++...++.... ..
T Consensus 3 ~l~~~i~~~-~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~------~~ 75 (188)
T TIGR00678 3 QLKRALEKG-RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG------QS 75 (188)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc------Cc
Confidence 344445322 223578899999999999999999886432 11111111000 00
Q ss_pred hhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCccccEEEec
Q 006018 229 LANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRVGHVFEVK 300 (664)
Q Consensus 229 l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~~l~ 300 (664)
....++..+.+.+ .+.+-++|+||++.. +..+.++..+....+.+.+|++|++.. +..... .....+++.
T Consensus 76 ~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~--sr~~~~~~~ 153 (188)
T TIGR00678 76 IKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR--SRCQVLPFP 153 (188)
T ss_pred CCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH--hhcEEeeCC
Confidence 1111222222222 345678999999754 346777777766566777887777542 222222 135689999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchh
Q 006018 301 ELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 301 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 342 (664)
+++.++..+.+... + -..+.+..+++.++|.|..
T Consensus 154 ~~~~~~~~~~l~~~--g------i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 154 PLSEEALLQWLIRQ--G------ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred CCCHHHHHHHHHHc--C------CCHHHHHHHHHHcCCCccc
Confidence 99999999888776 1 1246688999999998853
No 101
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.3e-05 Score=88.61 Aligned_cols=183 Identities=15% Similarity=0.105 Sum_probs=113.0
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC---------cceeeccchhhhhccc
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE---------GSYFMQNIRDESEKVG 227 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~---------~~~~~~~~~~~~~~~~ 227 (664)
...++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+..... .+-+-...+.......
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h 100 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRH 100 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCC
Confidence 66789999999999999986542 3456889999999999999999998543221 1111111111110000
Q ss_pred ----------chhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEe-CCHHHHHhhc
Q 006018 228 ----------GLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITT-RDVQLLKNHR 289 (664)
Q Consensus 228 ----------~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTt-R~~~~~~~~~ 289 (664)
...-.+++.+.+.+ ..++-++|+|+++.. ...+.|+..+....+.+.+|++| ....+.....
T Consensus 101 ~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~ 180 (598)
T PRK09111 101 VDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVL 180 (598)
T ss_pred CceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHH
Confidence 00011122222222 244567899999654 45777777776656677776655 3333333322
Q ss_pred CCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 290 GSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 290 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
.....+++..++.++..+.+.+.+-.... .-..+....|++.++|.+.-+.
T Consensus 181 --SRcq~~~f~~l~~~el~~~L~~i~~kegi--~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 181 --SRCQRFDLRRIEADVLAAHLSRIAAKEGV--EVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred --hheeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 14568999999999999999887632221 2233667788899998876544
No 102
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.27 E-value=5.1e-07 Score=103.88 Aligned_cols=132 Identities=34% Similarity=0.482 Sum_probs=100.4
Q ss_pred CcCcccEEEcCCCCCCcccccccc---cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEe
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLN 563 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 563 (664)
.++.|++|||++|.....+|..++ +|++|+++++.+..+|.++++|+.|.+|++..+..+..+|.....+++|++|.
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 489999999999999999998877 89999999999999999999999999999999888888887777799999999
Q ss_pred eeCCC--CCCccccccCCCCCCCEEEccC--------------------------CCCccccccccCCCCCCEEeecCCC
Q 006018 564 LSGCL--KLEKLPEEIGNLESLEYLNLAE--------------------------KDFEKIPSSMKQLSKLSDLRLQNCK 615 (664)
Q Consensus 564 L~~~~--~~~~~p~~l~~l~~L~~L~l~~--------------------------n~i~~lp~~i~~L~~L~~L~L~~~~ 615 (664)
+.... .....-..+.++.+|+.+.... +.....+..+..+.+|+.|.+.+|.
T Consensus 649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~ 728 (889)
T KOG4658|consen 649 LPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCG 728 (889)
T ss_pred eeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCC
Confidence 87643 1111222334444444444332 2333455567778888888888887
Q ss_pred CCC
Q 006018 616 RLQ 618 (664)
Q Consensus 616 ~l~ 618 (664)
...
T Consensus 729 ~~e 731 (889)
T KOG4658|consen 729 ISE 731 (889)
T ss_pred Cch
Confidence 653
No 103
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.26 E-value=1.6e-05 Score=85.45 Aligned_cols=163 Identities=15% Similarity=0.224 Sum_probs=96.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCC--cceeeccchhhhhccc-chhH--HhHHHHHHHhcCceEEEEEecCCCH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFE--GSYFMQNIRDESEKVG-GLAN--IHLNFERRRLSRMKVLIVFYDLTDL 256 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~-~l~~--~~l~~~~~~L~~~~~LlVlDdv~~~ 256 (664)
...+.|+|..|+|||+|++++++.+..... .++++. ..+...... .+.. ..+..+++.+++ .-+||+||+...
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-~~~f~~~~~~~l~~~~~~~~~~~~~~~~-~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-GDEFARKAVDILQKTHKEIEQFKNEICQ-NDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHHHHHHHHHhhhHHHHHHHHhcc-CCEEEEeccccc
Confidence 456899999999999999999997654322 223332 222211111 1111 123334444443 447888999543
Q ss_pred H----HHHHHhccCCC-CCCCcEEEEEeCCH---------HHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCC
Q 006018 257 K----QIDLLIGRLDG-FVPGSRVIITTRDV---------QLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPA 322 (664)
Q Consensus 257 ~----~~~~l~~~~~~-~~~gs~IliTtR~~---------~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 322 (664)
. ..+.+...+.. ...|..||+|+... .+..++. ..-++.+++++.++-.+++.+++-......
T Consensus 219 ~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~---~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~ 295 (450)
T PRK14087 219 SYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFN---MGLSIAIQKLDNKTATAIIKKEIKNQNIKQ 295 (450)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHh---CCceeccCCcCHHHHHHHHHHHHHhcCCCC
Confidence 1 22333332221 12345788886532 2233333 456788999999999999998874322111
Q ss_pred ccHHHHHHHHHHHhcCCchhHHHHhhh
Q 006018 323 AGFLELSNIVIKYANGVPLALQVLGSY 349 (664)
Q Consensus 323 ~~~~~~~~~i~~~~~glPLal~~~a~~ 349 (664)
.-.+++..-|++.++|.|..+.-+...
T Consensus 296 ~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 296 EVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred CCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 234577888999999999887755433
No 104
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.4e-05 Score=91.46 Aligned_cols=179 Identities=13% Similarity=0.138 Sum_probs=110.0
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC-----c-ce----ee-------ccc
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE-----G-SY----FM-------QNI 219 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-----~-~~----~~-------~~~ 219 (664)
...++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+..... | .| .+ .++
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 56789999999999999986532 2345789999999999999999988642110 0 00 00 000
Q ss_pred hhhhh-cccchhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcC
Q 006018 220 RDESE-KVGGLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRG 290 (664)
Q Consensus 220 ~~~~~-~~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~ 290 (664)
.+... ....+. +++.+.+. ..++.-++|||+++.+ +..+.|+..+......+.+|++|.+. .+.....
T Consensus 92 ~eidaas~~~Vd--~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIr- 168 (824)
T PRK07764 92 TEIDAASHGGVD--DARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIR- 168 (824)
T ss_pred EEecccccCCHH--HHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH-
Confidence 00000 000111 12222222 3355668889999754 55777877777666677777666544 3333322
Q ss_pred CccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchh
Q 006018 291 SRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 291 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 342 (664)
+....|++..++.++..+.+.+.+-.... ....+....|++.++|.+..
T Consensus 169 -SRc~~v~F~~l~~~~l~~~L~~il~~EGv--~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 169 -SRTHHYPFRLVPPEVMRGYLERICAQEGV--PVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred -hheeEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 14678999999999998888776522221 12234566788888887743
No 105
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=2.6e-05 Score=83.95 Aligned_cols=178 Identities=11% Similarity=0.130 Sum_probs=107.2
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-----C-Cc-ceee----c-----cch
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-----F-EG-SYFM----Q-----NIR 220 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-----f-~~-~~~~----~-----~~~ 220 (664)
...+++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++.+... . .+ .+.. . ++.
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~ 93 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVL 93 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceE
Confidence 56789999999999999986432 23567899999999999999999875321 0 00 0000 0 000
Q ss_pred hhhh-cccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCC
Q 006018 221 DESE-KVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGS 291 (664)
Q Consensus 221 ~~~~-~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~ 291 (664)
+... ...+.. ++..+.+.+ .+.+-++|+|+++.. +..+.+...+........+|++|.+. .+.....
T Consensus 94 ~i~g~~~~gid--~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~-- 169 (451)
T PRK06305 94 EIDGASHRGIE--DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTIL-- 169 (451)
T ss_pred EeeccccCCHH--HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHH--
Confidence 0000 000111 122222222 355678899998754 44666776666555566677666433 2222211
Q ss_pred ccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch
Q 006018 292 RVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL 341 (664)
Q Consensus 292 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 341 (664)
.....+++..++.++..+.+...+-..+ ..-..+.+..+++.++|.+.
T Consensus 170 sRc~~v~f~~l~~~el~~~L~~~~~~eg--~~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 170 SRCQKMHLKRIPEETIIDKLALIAKQEG--IETSREALLPIARAAQGSLR 217 (451)
T ss_pred HhceEEeCCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 1356799999999999988877653221 12234567788899988664
No 106
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=9.3e-06 Score=88.42 Aligned_cols=181 Identities=12% Similarity=0.059 Sum_probs=108.2
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc--CC---c-ce----eec-----cchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH--FE---G-SY----FMQ-----NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--f~---~-~~----~~~-----~~~~ 221 (664)
...++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+... .. + .| .+. ++.+
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 56789999999999999996442 24457899999999999999999875321 10 0 00 000 0111
Q ss_pred hhhc-ccchhHHhHHHHHHH-----hcCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCc
Q 006018 222 ESEK-VGGLANIHLNFERRR-----LSRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSR 292 (664)
Q Consensus 222 ~~~~-~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~ 292 (664)
.... ..... +.+.+.+. ..++.-++|+|+++. .+..+.++..+....+.+++|++|.+. .+..... .
T Consensus 93 idaas~~~v~--~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~--S 168 (509)
T PRK14958 93 VDAASRTKVE--DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVL--S 168 (509)
T ss_pred EcccccCCHH--HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHH--H
Confidence 0000 00111 12222221 134556889999975 356777777776655677777766543 2222211 1
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
....+++..++.++..+.+.+.+-..+.. -..+....|++.++|.+.-+.
T Consensus 169 Rc~~~~f~~l~~~~i~~~l~~il~~egi~--~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 169 RCLQFHLAQLPPLQIAAHCQHLLKEENVE--FENAALDLLARAANGSVRDAL 218 (509)
T ss_pred HhhhhhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 35678899999999887776665322211 223456678888888775443
No 107
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.22 E-value=1.2e-05 Score=89.35 Aligned_cols=233 Identities=14% Similarity=0.096 Sum_probs=117.2
Q ss_pred CCCCceeehhhHHHHHhhhcC---CCCcceEEEEecCCCCChHHHHHHHHHHhhcc-----CCc--ceeecc-----chh
Q 006018 157 NKDQLVGVESIIKEIESQLLS---GSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-----FEG--SYFMQN-----IRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-----f~~--~~~~~~-----~~~ 221 (664)
.++.+.|||+++++|...|.. +.....++.|+|++|.|||+.++.+.+++... .+. .+++.. ...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 557899999999999888753 22233567899999999999999998875432 111 122211 111
Q ss_pred hhh----cc------cchhHH-hHHHHHHHhc---CceEEEEEecCCCHH--HHHHHhccCCC-CCCCcEEEE--EeCCH
Q 006018 222 ESE----KV------GGLANI-HLNFERRRLS---RMKVLIVFYDLTDLK--QIDLLIGRLDG-FVPGSRVII--TTRDV 282 (664)
Q Consensus 222 ~~~----~~------~~l~~~-~l~~~~~~L~---~~~~LlVlDdv~~~~--~~~~l~~~~~~-~~~gs~Ili--TtR~~ 282 (664)
.+. .. .++... .++.+...+. +...+||||+++... .-+.|...+.+ ...+++|+| +|.+.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 110 00 011111 2344444432 224589999997543 11222222211 123555544 33322
Q ss_pred HHH----HhhcCCccccEEEecCCCHHHHHHHHHHhhhCCC-CCCc-cHHHHHHHHHHHhcCCchhHHHHhhhcC--C--
Q 006018 283 QLL----KNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQN-HPAA-GFLELSNIVIKYANGVPLALQVLGSYLK--G-- 352 (664)
Q Consensus 283 ~~~----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~-~~~~~~~~i~~~~~glPLal~~~a~~l~--~-- 352 (664)
+.. ......-....+..++.+.++-.+++..++-... ...+ ..+-+|+.++...|..=.||.++-.... +
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegs 992 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQ 992 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCC
Confidence 111 1111100122356689999999999998874221 1112 2222333333333444455554443331 1
Q ss_pred -CCHHHHHHHHHHhhcCCCCcccceeeeecCCCChhhhhhhhhcc
Q 006018 353 -MSEEEWESAVNKLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTA 396 (664)
Q Consensus 353 -~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la 396 (664)
...+....+..++...+ +.-....||.+.|.+++.+.
T Consensus 993 kVT~eHVrkAleeiE~sr-------I~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 993 KIVPRDITEATNQLFDSP-------LTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred ccCHHHHHHHHHHHHhhh-------HHHHHHcCCHHHHHHHHHHH
Confidence 24455555555443222 12233567777776665433
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.5e-05 Score=87.45 Aligned_cols=179 Identities=12% Similarity=0.093 Sum_probs=108.1
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC----cceeec-----------cchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE----GSYFMQ-----------NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~----~~~~~~-----------~~~~ 221 (664)
...++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+..... .+-... ++.+
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 56789999999999999886432 2345689999999999999999988533210 000000 0000
Q ss_pred hhhcccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCcc
Q 006018 222 ESEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSRV 293 (664)
Q Consensus 222 ~~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~ 293 (664)
... .....-.+++.+.+.. .+++-++|+|+++.. +..+.++..+......+.+|++|.+. .+..... ..
T Consensus 93 i~~-~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~--SR 169 (527)
T PRK14969 93 VDA-ASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL--SR 169 (527)
T ss_pred eec-cccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHH--HH
Confidence 000 0001111122222222 345678999999854 44677777776655566666666543 2221111 13
Q ss_pred ccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch
Q 006018 294 GHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL 341 (664)
Q Consensus 294 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 341 (664)
...++++.++.++..+.+.+.+-... .....+....|++.++|.+.
T Consensus 170 c~~~~f~~l~~~~i~~~L~~il~~eg--i~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 170 CLQFNLKQMPPPLIVSHLQHILEQEN--IPFDATALQLLARAAAGSMR 215 (527)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 56899999999999988877653222 12234556778889999775
No 109
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.22 E-value=1.4e-05 Score=84.71 Aligned_cols=156 Identities=19% Similarity=0.223 Sum_probs=93.0
Q ss_pred CCCCceeehhhHHHHHhhhcCC-----------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLSG-----------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
.-.++.|.+..+++|.+.+... -...+-|.++|++|+|||++|+++++.....|-.+ . ..+....
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V---~-~seL~~k 256 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRV---V-GSELIQK 256 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE---e-cchhhhh
Confidence 4466789999999998876421 12345688999999999999999999876554211 1 1111111
Q ss_pred ccchhHHhHH-HHHHHhcCceEEEEEecCCCHH----------------HHHHHhccCCCC--CCCcEEEEEeCCHHHHH
Q 006018 226 VGGLANIHLN-FERRRLSRMKVLIVFYDLTDLK----------------QIDLLIGRLDGF--VPGSRVIITTRDVQLLK 286 (664)
Q Consensus 226 ~~~l~~~~l~-~~~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IliTtR~~~~~~ 286 (664)
..+.....+. .+.....+.+.+|+||+++... .+..++..+..+ ..+.+||+||...+...
T Consensus 257 ~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LD 336 (438)
T PTZ00361 257 YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLD 336 (438)
T ss_pred hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhh
Confidence 1111111122 2222234568899999975321 112222222221 23567888887655543
Q ss_pred hhc--CCccccEEEecCCCHHHHHHHHHHhhh
Q 006018 287 NHR--GSRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 287 ~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
..- ....+..++++..+.++..++|..+..
T Consensus 337 paLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 337 PALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred HHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 321 123567899999999999999998763
No 110
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.1e-06 Score=66.20 Aligned_cols=58 Identities=33% Similarity=0.508 Sum_probs=28.8
Q ss_pred CCcEEeecCCCCCCccc-cccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCC
Q 006018 534 RLVDLDLTNCSGLKSVS-SRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKD 592 (664)
Q Consensus 534 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~ 592 (664)
+|++|++++| .+..+| ..|.++++|++|++++|.+...-|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555544 233333 344555555555555555333333445555555555555554
No 111
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.22 E-value=7.9e-08 Score=95.90 Aligned_cols=138 Identities=28% Similarity=0.333 Sum_probs=88.9
Q ss_pred Ccccccccc-ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCcccc-ccC
Q 006018 502 LKRFPEISC-NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPE-EIG 578 (664)
Q Consensus 502 ~~~~p~~~~-~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~-~l~ 578 (664)
+..+|..++ ....++|..|.|+.+|+ .|+.+++|+.|||++|+....-|..|.++++|..|-+.+|+.+..+|. .|+
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG 137 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence 455555444 56667777777777775 566777777777777666666677777777777776666444555553 467
Q ss_pred CCCCCCEEEccCCCCcccc-ccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcc
Q 006018 579 NLESLEYLNLAEKDFEKIP-SSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTL 646 (664)
Q Consensus 579 ~l~~L~~L~l~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~ 646 (664)
+|.+|+.|.+.-|++..++ ..+..|++|..|.+-+|. .+.++.. ++..+.+++.+.+..|.
T Consensus 138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~------tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKG------TFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccc------cccchhccchHhhhcCc
Confidence 7777777777777776554 356677777777776643 3444432 45566666666666665
No 112
>PRK06620 hypothetical protein; Validated
Probab=98.19 E-value=1e-05 Score=78.07 Aligned_cols=133 Identities=11% Similarity=0.045 Sum_probs=78.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHhcCceEEEEEecCCCHHH--HH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRLSRMKVLIVFYDLTDLKQ--ID 260 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~~~--~~ 260 (664)
+.+.|||++|+|||+|++.+++.... .++..... ..+..+ ..-++++||++...+ +-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~~---------------~~~~~~-~~d~lliDdi~~~~~~~lf 103 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIFF---------------NEEILE-KYNAFIIEDIENWQEPALL 103 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchhhh---------------chhHHh-cCCEEEEeccccchHHHHH
Confidence 56899999999999999987776432 22221000 001112 235788899975432 22
Q ss_pred HHhccCCCCCCCcEEEEEeCCH-------HHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHH
Q 006018 261 LLIGRLDGFVPGSRVIITTRDV-------QLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVI 333 (664)
Q Consensus 261 ~l~~~~~~~~~gs~IliTtR~~-------~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~ 333 (664)
.+...+. ..|..||+|++.. ++..++. ..-++++++++.++-.+++.+.+.... ..-.+++.+-|+
T Consensus 104 ~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~---~gl~~~l~~pd~~~~~~~l~k~~~~~~--l~l~~ev~~~L~ 176 (214)
T PRK06620 104 HIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIK---SVLSILLNSPDDELIKILIFKHFSISS--VTISRQIIDFLL 176 (214)
T ss_pred HHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHh---CCceEeeCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Confidence 2222222 3466899998743 2333333 455899999999998888887764211 112245666677
Q ss_pred HHhcCCchhH
Q 006018 334 KYANGVPLAL 343 (664)
Q Consensus 334 ~~~~glPLal 343 (664)
+.+.|.--.+
T Consensus 177 ~~~~~d~r~l 186 (214)
T PRK06620 177 VNLPREYSKI 186 (214)
T ss_pred HHccCCHHHH
Confidence 7766554433
No 113
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.6e-05 Score=86.33 Aligned_cols=179 Identities=13% Similarity=0.156 Sum_probs=108.0
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc--CCcceeec-----------------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH--FEGSYFMQ----------------- 217 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~----------------- 217 (664)
...++||.+..+..|.+.+..+ .-...+.++|+.|+||||+|+.+++.+... .+...|..
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 6678999999999999988643 223458899999999999999999885331 11000110
Q ss_pred ----cchhhhhcccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC-HHHH
Q 006018 218 ----NIRDESEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRD-VQLL 285 (664)
Q Consensus 218 ----~~~~~~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~-~~~~ 285 (664)
++.... ......-.++..+.+.+ .+.+-++|+|+++.. ...+.|+..+....+.+.+|++|.+ ..+.
T Consensus 93 g~~~n~~~~d-~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl 171 (620)
T PRK14954 93 GTSLNISEFD-AASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (620)
T ss_pred cCCCCeEEec-ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 000000 00000011222222222 344567899998754 4567777777665556665555543 3333
Q ss_pred HhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch
Q 006018 286 KNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL 341 (664)
Q Consensus 286 ~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 341 (664)
.... .....++...++.++....+...+-... ..-..+.++.+++.++|..-
T Consensus 172 ~TI~--SRc~~vef~~l~~~ei~~~L~~i~~~eg--i~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 172 ATIA--SRCQRFNFKRIPLDEIQSQLQMICRAEG--IQIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHH--hhceEEecCCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHhCCCHH
Confidence 2222 1467899999999998888877653221 11234567788899998654
No 114
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=2.4e-05 Score=87.28 Aligned_cols=184 Identities=15% Similarity=0.109 Sum_probs=111.7
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC-----Ccceeeccchhhhhcc-----
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF-----EGSYFMQNIRDESEKV----- 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-----~~~~~~~~~~~~~~~~----- 226 (664)
...++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+.... ..+-.....+......
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~ 92 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVI 92 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEE
Confidence 56789999999999998886542 245578999999999999999998854211 1100000001100000
Q ss_pred -----cchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCcc
Q 006018 227 -----GGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSRV 293 (664)
Q Consensus 227 -----~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~ 293 (664)
......+++.+.+.+ ..++-++|+|+++.. +..+.|+..+....+.+.+|++|.+. .+..... ..
T Consensus 93 ~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~--SR 170 (585)
T PRK14950 93 EMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATIL--SR 170 (585)
T ss_pred EEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHH--hc
Confidence 001111222232322 245678999998744 55777777766555566777666543 3322221 13
Q ss_pred ccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHH
Q 006018 294 GHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQV 345 (664)
Q Consensus 294 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 345 (664)
...+++..++.++....+...+...... -..+.+..+++.++|.+..+..
T Consensus 171 ~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 171 CQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 4678899999999988888776432221 2246677889999998865543
No 115
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=1.9e-05 Score=83.46 Aligned_cols=175 Identities=14% Similarity=0.161 Sum_probs=105.1
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc--------CCcceeeccchhhhhcccc
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH--------FEGSYFMQNIRDESEKVGG 228 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~~ 228 (664)
.-.+++|.+..++.+...+..+ .-.+.+.++|++|+|||++|+.+++.+... |...++- +... ....
T Consensus 15 ~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~~--~~~~ 89 (367)
T PRK14970 15 TFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDAA--SNNS 89 (367)
T ss_pred cHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--eccc--cCCC
Confidence 5678899999999999999643 234578899999999999999998875431 1111110 1000 0000
Q ss_pred hhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC-HHHHHhhcCCccccEEEec
Q 006018 229 LANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRD-VQLLKNHRGSRVGHVFEVK 300 (664)
Q Consensus 229 l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~-~~~~~~~~~~~~~~~~~l~ 300 (664)
. .++..+.+. ..+++-++|+|+++.. ..++.+...+......+.+|++|.. ..+...... ...+++.+
T Consensus 90 ~--~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s--r~~~v~~~ 165 (367)
T PRK14970 90 V--DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS--RCQIFDFK 165 (367)
T ss_pred H--HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh--cceeEecC
Confidence 1 112222221 2344568999998743 3466666555443445566665533 222211111 34578999
Q ss_pred CCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchh
Q 006018 301 ELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 301 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 342 (664)
+++.++....+...+..... .-..+.+..+++.++|.+-.
T Consensus 166 ~~~~~~l~~~l~~~~~~~g~--~i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 166 RITIKDIKEHLAGIAVKEGI--KFEDDALHIIAQKADGALRD 205 (367)
T ss_pred CccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHH
Confidence 99999998888877643222 12246677788888876543
No 116
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.17 E-value=4.4e-05 Score=82.01 Aligned_cols=160 Identities=15% Similarity=0.163 Sum_probs=90.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCc--ceeeccchhhhhcc-cchhHHhHHHHHHHhcCceEEEEEecCCCH--
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEG--SYFMQNIRDESEKV-GGLANIHLNFERRRLSRMKVLIVFYDLTDL-- 256 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~-~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~-- 256 (664)
...+.|+|.+|+|||+||+++++.+...++. +.|+. ..+..... ..+.......+++.+....-+|++||++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcC
Confidence 4569999999999999999999997665432 33332 22211111 011111233344444444568999999743
Q ss_pred -HHH-HHHhccCCC-CCCCcEEEEEeC-CHHHHHhh----cC-CccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHH
Q 006018 257 -KQI-DLLIGRLDG-FVPGSRVIITTR-DVQLLKNH----RG-SRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLE 327 (664)
Q Consensus 257 -~~~-~~l~~~~~~-~~~gs~IliTtR-~~~~~~~~----~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 327 (664)
... +.+...+.. ...|..||+||. .+.-.... .. -.....+++++.+.+.-.+++.+.+-.... .-..+
T Consensus 209 ~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~--~l~~e 286 (440)
T PRK14088 209 KTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG--ELPEE 286 (440)
T ss_pred cHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC--CCCHH
Confidence 111 222222111 123457888874 33222111 00 013457899999999999999888742221 12346
Q ss_pred HHHHHHHHhcCCchhHH
Q 006018 328 LSNIVIKYANGVPLALQ 344 (664)
Q Consensus 328 ~~~~i~~~~~glPLal~ 344 (664)
+...|++.+.|.--.|.
T Consensus 287 v~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 287 VLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHhccccCHHHHH
Confidence 67778887777655444
No 117
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.17 E-value=2e-05 Score=91.20 Aligned_cols=194 Identities=16% Similarity=0.161 Sum_probs=106.8
Q ss_pred hHhhhhhccccccccCCCCCCCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC-----
Q 006018 137 LIEGNVNDISKKLSDLFPSDNKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE----- 211 (664)
Q Consensus 137 ~~~~~~~~~~~~l~~~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~----- 211 (664)
.+++...+...+..+ . ..+.+|||+.++.++...|... ...-+.++|.+|+||||+|+.+++++....-
T Consensus 169 ~l~~~~~~L~~~~r~---~-~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~ 242 (852)
T TIGR03345 169 ALDQYTTDLTAQARE---G-KIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred hHHHHhhhHHHHhcC---C-CCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcccc
Confidence 455555555444332 2 4568999999999999888543 2345679999999999999999998754321
Q ss_pred -cceeeccchhhhhccc--chhHHhHHHHHHHhc--CceEEEEEecCCCHH-------HH---HHHhccCCCCCCC-cEE
Q 006018 212 -GSYFMQNIRDESEKVG--GLANIHLNFERRRLS--RMKVLIVFYDLTDLK-------QI---DLLIGRLDGFVPG-SRV 275 (664)
Q Consensus 212 -~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~L~--~~~~LlVlDdv~~~~-------~~---~~l~~~~~~~~~g-s~I 275 (664)
..+|..++........ +-.+..++.+.+.+. +.+++|++|++.... +. ..+.+.+. .| -++
T Consensus 243 ~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~---~G~l~~ 319 (852)
T TIGR03345 243 NVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA---RGELRT 319 (852)
T ss_pred CCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh---CCCeEE
Confidence 2233333333221111 111122443333332 468999999986542 11 23444432 33 355
Q ss_pred EEEeCCHHHHH----hhcCCccccEEEecCCCHHHHHHHHHHhhh--CCCCCCccHHHHHHHHHHHhcCC
Q 006018 276 IITTRDVQLLK----NHRGSRVGHVFEVKELSYNDSLTLFSRNAF--GQNHPAAGFLELSNIVIKYANGV 339 (664)
Q Consensus 276 liTtR~~~~~~----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~--~~~~~~~~~~~~~~~i~~~~~gl 339 (664)
|-+|...+... ..........+.+++++.++..+++....- ...+...-..+....+++.+.+.
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 55555422210 000001345899999999999999754331 11111122234455566666543
No 118
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.16 E-value=2.7e-05 Score=80.56 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=87.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHH
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNF 236 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~ 236 (664)
...+++|.+...+.+..++..+ .-..++.++|++|+|||++|+.+++.....| ..+. ... . ....+. ..+..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~-~~~-~-~~~~i~-~~l~~ 90 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVN-GSD-C-RIDFVR-NRLTR 90 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEec-cCc-c-cHHHHH-HHHHH
Confidence 5678999999999999998643 2345777799999999999999998764322 1111 111 0 000011 11111
Q ss_pred HHHH--hcCceEEEEEecCCCH---HHHHHHhccCCCCCCCcEEEEEeCCHHHH-HhhcCCccccEEEecCCCHHHHHHH
Q 006018 237 ERRR--LSRMKVLIVFYDLTDL---KQIDLLIGRLDGFVPGSRVIITTRDVQLL-KNHRGSRVGHVFEVKELSYNDSLTL 310 (664)
Q Consensus 237 ~~~~--L~~~~~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IliTtR~~~~~-~~~~~~~~~~~~~l~~L~~~ea~~L 310 (664)
.... +...+-++|+|+++.. +..+.+...+.....++++|+||...... ..... ....+.++..+.++..++
T Consensus 91 ~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s--R~~~i~~~~p~~~~~~~i 168 (316)
T PHA02544 91 FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS--RCRVIDFGVPTKEEQIEM 168 (316)
T ss_pred HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh--hceEEEeCCCCHHHHHHH
Confidence 1111 1234668899999755 22334444344445677899988754321 11111 234677778888887776
Q ss_pred HHH
Q 006018 311 FSR 313 (664)
Q Consensus 311 f~~ 313 (664)
+..
T Consensus 169 l~~ 171 (316)
T PHA02544 169 MKQ 171 (316)
T ss_pred HHH
Confidence 654
No 119
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=2.4e-05 Score=85.75 Aligned_cols=186 Identities=12% Similarity=0.110 Sum_probs=112.5
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC-----Cc-ce-----eec----cchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF-----EG-SY-----FMQ----NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-----~~-~~-----~~~----~~~~ 221 (664)
...+++|.+..++.|.+.+..+ .-...+.++|+.|+||||+|+.+++.+.... .+ .+ +.. ++.+
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~e 92 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVE 92 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 5668899999999999888643 2246788999999999999999998854311 00 00 000 0000
Q ss_pred hhh-cccchhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC-HHHHHhhcCCc
Q 006018 222 ESE-KVGGLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRD-VQLLKNHRGSR 292 (664)
Q Consensus 222 ~~~-~~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~-~~~~~~~~~~~ 292 (664)
... ....+. +++.+.+. ..+++-++|+|+++.. +..+.|+..+........+|++|.+ ..+..... .
T Consensus 93 Id~a~~~~Id--~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~--S 168 (624)
T PRK14959 93 IDGASNRGID--DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIV--S 168 (624)
T ss_pred EecccccCHH--HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHH--h
Confidence 000 000111 12222222 2455678999999754 5567777776544455566666654 33332221 1
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCc-hhHHHHhhh
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVP-LALQVLGSY 349 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP-Lal~~~a~~ 349 (664)
....+++..++.++..+.+...+..... .-..+.++.|++.++|.+ .|+..+...
T Consensus 169 Rcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 169 RCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred hhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3567899999999999888876643221 123456778888898865 566665443
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=5.7e-05 Score=81.85 Aligned_cols=181 Identities=15% Similarity=0.104 Sum_probs=110.7
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc-c---CCcceeec-----------cchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS-H---FEGSYFMQ-----------NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~---f~~~~~~~-----------~~~~ 221 (664)
...++||-+..++.|...+..+ .-.....++|+.|+||||+|+.+++.+.. . +..+.-.. ++.+
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 6678999999999999998654 23446689999999999999999988532 1 11000000 0000
Q ss_pred hhhcc-cchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHHH-HHhhcCCc
Q 006018 222 ESEKV-GGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQL-LKNHRGSR 292 (664)
Q Consensus 222 ~~~~~-~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~~-~~~~~~~~ 292 (664)
..... .+. .++..+.+.. .+++-++|+|+++.. +..+.++..+....+.+++|++|.+..- ..... .
T Consensus 91 ldaas~~gI--d~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~--S 166 (535)
T PRK08451 91 MDAASNRGI--DDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATIL--S 166 (535)
T ss_pred eccccccCH--HHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHH--h
Confidence 00000 001 1122121111 245668899999754 4567777777665667777777766422 11111 1
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
....+++.+++.++..+.+.+.+-..+. .-..+.+..|++.++|.+.-+.
T Consensus 167 Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi--~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 167 RTQHFRFKQIPQNSIISHLKTILEKEGV--SYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred hceeEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHH
Confidence 3568999999999999988776633222 2234667788899998885444
No 121
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.14 E-value=4.8e-05 Score=80.24 Aligned_cols=158 Identities=19% Similarity=0.219 Sum_probs=92.3
Q ss_pred CCCCCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhh
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDE 222 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 222 (664)
|...-.++.|.+..+++|.+.+.. +-...+-|.++|++|+|||+||+++++.....|-.. . ..+.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i---~-~s~l 215 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV---V-GSEF 215 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE---e-hHHH
Confidence 333556789999999988876531 112356789999999999999999999865443111 1 1111
Q ss_pred hhcccchhHHhHHH-HHHHhcCceEEEEEecCCCHH----------------HHHHHhccCCCC--CCCcEEEEEeCCHH
Q 006018 223 SEKVGGLANIHLNF-ERRRLSRMKVLIVFYDLTDLK----------------QIDLLIGRLDGF--VPGSRVIITTRDVQ 283 (664)
Q Consensus 223 ~~~~~~l~~~~l~~-~~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IliTtR~~~ 283 (664)
.....+-....+.. +.......+.+|++|+++..- .+..++..+... ..+..||+||...+
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 11111111111222 222234578999999986431 122333333322 23567788887554
Q ss_pred HHHh--hcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 284 LLKN--HRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 284 ~~~~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
.... ......+..++++..+.++..++|..+.
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 4321 1111256778999999999888888665
No 122
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=5.8e-05 Score=83.04 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=109.1
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC----Ccceeeccchhhh---------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF----EGSYFMQNIRDES--------- 223 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~~~~~~~--------- 223 (664)
...++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+.... ..+--....+...
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 5678999999999999999654 2234578999999999999999998754211 0000000001000
Q ss_pred ----h-cccchhHHhHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCC-HHHHHhhcC
Q 006018 224 ----E-KVGGLANIHLNFERRRL-----SRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRD-VQLLKNHRG 290 (664)
Q Consensus 224 ----~-~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~-~~~~~~~~~ 290 (664)
. ...+.. +++.+.+.+ .+++-++|+|+++. ....+.|+..+........+|++|.+ ..+......
T Consensus 90 ieidaas~~gvd--~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~S 167 (584)
T PRK14952 90 VELDAASHGGVD--DTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS 167 (584)
T ss_pred EEeccccccCHH--HHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHH
Confidence 0 000111 122222222 34566889999874 45677777777765666666665544 333333221
Q ss_pred CccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch
Q 006018 291 SRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL 341 (664)
Q Consensus 291 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 341 (664)
....++...++.++..+.+.+.+-.... .-..+....|++.++|.+.
T Consensus 168 --Rc~~~~F~~l~~~~i~~~L~~i~~~egi--~i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 168 --RTHHYPFRLLPPRTMRALIARICEQEGV--VVDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred --hceEEEeeCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 3578999999999999888776633222 1223556778888888764
No 123
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.11 E-value=6.7e-05 Score=81.40 Aligned_cols=157 Identities=14% Similarity=0.190 Sum_probs=90.8
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCc--ceeeccchhhhhcc-cchhHHhHHHHHHHhcCceEEEEEecCCCHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEG--SYFMQNIRDESEKV-GGLANIHLNFERRRLSRMKVLIVFYDLTDLK 257 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~-~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~~ 257 (664)
....+.|+|.+|+|||+|++++++.+..+++. +.++. ..+..... ..+.....+.+.+.++. .-+|||||++...
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~dlLiiDDi~~l~ 224 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-SEKFTNDFVNALRNNTMEEFKEKYRS-VDVLLIDDIQFLA 224 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHHHHHHHHcCcHHHHHHHHhc-CCEEEEehhhhhc
Confidence 34678999999999999999999998776533 23332 22211110 01111112334444443 4478899996421
Q ss_pred ----HHHHHhccCCC-CCCCcEEEEEeCCHH---------HHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCc
Q 006018 258 ----QIDLLIGRLDG-FVPGSRVIITTRDVQ---------LLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAA 323 (664)
Q Consensus 258 ----~~~~l~~~~~~-~~~gs~IliTtR~~~---------~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 323 (664)
..+.+...+.. ...|..|++||.... +..++. ....+++++.+.++-.+++...+-.. ...
T Consensus 225 ~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~---~gl~v~i~~pd~~~r~~il~~~~~~~--~~~ 299 (450)
T PRK00149 225 GKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFE---WGLTVDIEPPDLETRIAILKKKAEEE--GID 299 (450)
T ss_pred CCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhc---CCeeEEecCCCHHHHHHHHHHHHHHc--CCC
Confidence 11223222211 123456888776432 122222 34579999999999999999887432 122
Q ss_pred cHHHHHHHHHHHhcCCchhHH
Q 006018 324 GFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 324 ~~~~~~~~i~~~~~glPLal~ 344 (664)
-.+++...|++.+.|..-.+.
T Consensus 300 l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 300 LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred CCHHHHHHHHcCcCCCHHHHH
Confidence 234667778888877766443
No 124
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.11 E-value=8.1e-08 Score=102.56 Aligned_cols=127 Identities=22% Similarity=0.201 Sum_probs=82.3
Q ss_pred ccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCC
Q 006018 512 IEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEK 591 (664)
Q Consensus 512 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 591 (664)
|...+.+.|.+..+..++.-++.|+.|||++|+. .... .+..++.|++|||++|. +..+|..-..--.|+.|.+++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~-~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKF-TKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh-hhhH-HHHhcccccccccccch-hccccccchhhhhheeeeeccc
Confidence 4444555566666666666777888888887543 3333 56677888888888876 5566643211123888888888
Q ss_pred CCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccc
Q 006018 592 DFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 592 ~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~ 648 (664)
.++++- ++.+|.+|+.|||++|-+ ....++. -+..+.+|+.|+|.+|++.
T Consensus 243 ~l~tL~-gie~LksL~~LDlsyNll-~~hseL~-----pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 243 ALTTLR-GIENLKSLYGLDLSYNLL-SEHSELE-----PLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHHhhh-hHHhhhhhhccchhHhhh-hcchhhh-----HHHHHHHHHHHhhcCCccc
Confidence 887774 677888888888888533 2222211 2445667888888888775
No 125
>PTZ00202 tuzin; Provisional
Probab=98.09 E-value=4.4e-05 Score=78.73 Aligned_cols=157 Identities=16% Similarity=0.088 Sum_probs=90.5
Q ss_pred CCCCCCCCceeehhhHHHHHhhhcCCCC-cceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchh-------hhh
Q 006018 153 FPSDNKDQLVGVESIIKEIESQLLSGST-EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRD-------ESE 224 (664)
Q Consensus 153 ~p~~~~~~~vGr~~~~~~l~~~L~~~~~-~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~-------~~~ 224 (664)
.|. +...|+||+.++.+|...|...+. ..+++.|.|++|+|||||++.+..... + ..++.+.+. ...
T Consensus 257 lPa-~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~--~--~qL~vNprg~eElLr~LL~ 331 (550)
T PTZ00202 257 APA-VIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG--M--PAVFVDVRGTEDTLRSVVK 331 (550)
T ss_pred CCC-CccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC--c--eEEEECCCCHHHHHHHHHH
Confidence 455 788999999999999999964332 356889999999999999999987643 1 233333321 111
Q ss_pred ccc---chhHHh-HHHHHHHh-----c-CceEEEEEe--cCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHHHhhcCCc
Q 006018 225 KVG---GLANIH-LNFERRRL-----S-RMKVLIVFY--DLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLLKNHRGSR 292 (664)
Q Consensus 225 ~~~---~l~~~~-l~~~~~~L-----~-~~~~LlVlD--dv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~ 292 (664)
..+ .....+ ++.+.+.+ . +++.+||+- +-.+....-.-.-.+.....-|+|++----+.+-......+
T Consensus 332 ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lp 411 (550)
T PTZ00202 332 ALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLP 411 (550)
T ss_pred HcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCc
Confidence 111 001011 23333322 2 556666653 33333322111122333355678887655443322222222
Q ss_pred cccEEEecCCCHHHHHHHHHHh
Q 006018 293 VGHVFEVKELSYNDSLTLFSRN 314 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~ 314 (664)
.-..|.++.++.++|.++-.+.
T Consensus 412 rldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 412 RLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cceeEecCCCCHHHHHHHHhhc
Confidence 3457999999999998876554
No 126
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.09 E-value=2.3e-05 Score=76.36 Aligned_cols=175 Identities=17% Similarity=0.195 Sum_probs=110.8
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhh--ccCCcceeeccchhhhhcccchhHH--
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNIS--SHFEGSYFMQNIRDESEKVGGLANI-- 232 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~l~~~-- 232 (664)
...+++|.+..+..|.+.+.. ...+....+|++|.|||+-|+++++..- +-|++++.-.+....... .+...
T Consensus 34 t~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGi--svvr~Ki 109 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGI--SVVREKI 109 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccc--cchhhhh
Confidence 677899999999999998865 5678899999999999999999998743 345544432211111100 01111
Q ss_pred -hHHHHHHHhc---C---ce-EEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHHH-HHhhcCCccccEEEecC
Q 006018 233 -HLNFERRRLS---R---MK-VLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQL-LKNHRGSRVGHVFEVKE 301 (664)
Q Consensus 233 -~l~~~~~~L~---~---~~-~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~~-~~~~~~~~~~~~~~l~~ 301 (664)
....+..... + .+ -++|||+++.+ +.|..+...+..+...++.++.+-..+. ..... .....|.-++
T Consensus 110 k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~--SRC~KfrFk~ 187 (346)
T KOG0989|consen 110 KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV--SRCQKFRFKK 187 (346)
T ss_pred cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH--hhHHHhcCCC
Confidence 1111111111 1 12 47889999865 5688888888776777776655543322 11111 1345688899
Q ss_pred CCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCC
Q 006018 302 LSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGV 339 (664)
Q Consensus 302 L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl 339 (664)
|..++..+=+...+-..+. +-..+..+.|++.++|-
T Consensus 188 L~d~~iv~rL~~Ia~~E~v--~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 188 LKDEDIVDRLEKIASKEGV--DIDDDALKLIAKISDGD 223 (346)
T ss_pred cchHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCc
Confidence 9999999988888743332 23346678888888774
No 127
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.08 E-value=4.7e-05 Score=88.54 Aligned_cols=152 Identities=18% Similarity=0.136 Sum_probs=88.4
Q ss_pred CCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-----C-Ccceeeccchhhhhccc--ch
Q 006018 158 KDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-----F-EGSYFMQNIRDESEKVG--GL 229 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-----f-~~~~~~~~~~~~~~~~~--~l 229 (664)
.+.++||+++++++.+.|... ...-+.++|++|+|||++|+.++.++... . ...+|.-+......... +-
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~--~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge 255 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRR--TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGE 255 (821)
T ss_pred CCCCCCcHHHHHHHHHHHccc--ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccH
Confidence 346899999999999999643 23456799999999999999999986431 1 23344434433332111 11
Q ss_pred hHHhHHHHHHHh-cCceEEEEEecCCCHH----------HHHHHhccCCCCCCCcEEEEEeCCHHHHHh----hcCCccc
Q 006018 230 ANIHLNFERRRL-SRMKVLIVFYDLTDLK----------QIDLLIGRLDGFVPGSRVIITTRDVQLLKN----HRGSRVG 294 (664)
Q Consensus 230 ~~~~l~~~~~~L-~~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~IliTtR~~~~~~~----~~~~~~~ 294 (664)
-+..++.+.+.+ ..++++|++|+++..- ..+.+.+.+.. ..-++|.+|...+.... .......
T Consensus 256 ~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf 333 (821)
T CHL00095 256 FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKHIEKDPALERRF 333 (821)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHHHhcCHHHHhcc
Confidence 112233333333 3468999999985321 12333333321 12455555554433111 0000123
Q ss_pred cEEEecCCCHHHHHHHHHH
Q 006018 295 HVFEVKELSYNDSLTLFSR 313 (664)
Q Consensus 295 ~~~~l~~L~~~ea~~Lf~~ 313 (664)
..+.++..+.++..+++..
T Consensus 334 ~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 334 QPVYVGEPSVEETIEILFG 352 (821)
T ss_pred eEEecCCCCHHHHHHHHHH
Confidence 5678889999998888754
No 128
>CHL00176 ftsH cell division protein; Validated
Probab=98.07 E-value=0.00013 Score=81.31 Aligned_cols=175 Identities=18% Similarity=0.224 Sum_probs=97.5
Q ss_pred CCCCceeehhhHHHHHhhhc---CC-------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLL---SG-------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~---~~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
...+++|.++..+++.+.+. .. ....+-|.++|++|+|||+||++++......|- ..+..+.....
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i----~is~s~f~~~~ 256 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFF----SISGSEFVEMF 256 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCee----eccHHHHHHHh
Confidence 44568898887777665542 11 112446899999999999999999987533221 11111111111
Q ss_pred cchhHHhHH-HHHHHhcCceEEEEEecCCCHH----------------HHHHHhccCCCC--CCCcEEEEEeCCHHHHHh
Q 006018 227 GGLANIHLN-FERRRLSRMKVLIVFYDLTDLK----------------QIDLLIGRLDGF--VPGSRVIITTRDVQLLKN 287 (664)
Q Consensus 227 ~~l~~~~l~-~~~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IliTtR~~~~~~~ 287 (664)
.+.....+. .+.+.....+++|++||++... .+..++..+..+ ..+..||.||...+....
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 111111122 2334445678999999996431 133444333322 234566667765543321
Q ss_pred h--cCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcC
Q 006018 288 H--RGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANG 338 (664)
Q Consensus 288 ~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g 338 (664)
. .....+..+.++..+.++-.+++..++-.... ........+++.+.|
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~---~~d~~l~~lA~~t~G 386 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL---SPDVSLELIARRTPG 386 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhccc---chhHHHHHHHhcCCC
Confidence 1 11125678899999999999999888733111 112234456666655
No 129
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.07 E-value=4.1e-05 Score=81.97 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=88.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCc--ceeeccchhhhhccc-chhHHhHHHHHHHhcCceEEEEEecCCCHH-
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEG--SYFMQNIRDESEKVG-GLANIHLNFERRRLSRMKVLIVFYDLTDLK- 257 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~-~l~~~~l~~~~~~L~~~~~LlVlDdv~~~~- 257 (664)
...+.|+|.+|+|||+|++++++.+..+... ++++. ..+...... .+.....+.+.+.+++ .-+|||||++...
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-SEKFTNDFVNALRNNKMEEFKEKYRS-VDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-HHHHHHHHHHHHHcCCHHHHHHHHHh-CCEEEEehhhhhcC
Confidence 4568999999999999999999997665432 33332 222111100 1111122333444443 3478899996431
Q ss_pred --H-HHHHhccCCC-CCCCcEEEEEeCCH-HH--------HHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCcc
Q 006018 258 --Q-IDLLIGRLDG-FVPGSRVIITTRDV-QL--------LKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAG 324 (664)
Q Consensus 258 --~-~~~l~~~~~~-~~~gs~IliTtR~~-~~--------~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 324 (664)
. .+.+...+.. ...+..+|+|+... .. ..++. ....+.+++.+.++-.+++...+-... ..-
T Consensus 214 ~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~---~g~~v~i~~pd~~~r~~il~~~~~~~~--~~l 288 (405)
T TIGR00362 214 KERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFE---WGLVVDIEPPDLETRLAILQKKAEEEG--LEL 288 (405)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhcc---CCeEEEeCCCCHHHHHHHHHHHHHHcC--CCC
Confidence 1 1223222211 12355688877642 21 11221 235789999999999999988874322 222
Q ss_pred HHHHHHHHHHHhcCCchhHH
Q 006018 325 FLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 325 ~~~~~~~i~~~~~glPLal~ 344 (664)
.+++...|++.+.|..-.+.
T Consensus 289 ~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 289 PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred CHHHHHHHHHhcCCCHHHHH
Confidence 34667777787777665444
No 130
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=7.4e-05 Score=80.98 Aligned_cols=181 Identities=12% Similarity=0.083 Sum_probs=108.8
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-----CCcceeeccch-----------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-----FEGSYFMQNIR----------- 220 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~----------- 220 (664)
...+++|.+..++.+...+..+ .-.....++|+.|+||||+|+.++..+... .++.. ..+..
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-CENCVEIDKGSFPDLI 91 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-cHHHHHHhcCCCCcEE
Confidence 5568999999999999999653 224456789999999999999999875321 11110 00000
Q ss_pred hhhh-cccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC-HHHHHhhcCC
Q 006018 221 DESE-KVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRD-VQLLKNHRGS 291 (664)
Q Consensus 221 ~~~~-~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~-~~~~~~~~~~ 291 (664)
+... ...+.. +.+.+.+.. .+++-++|+|+++.. +..+.+...+....+...+|++|.+ ..+......
T Consensus 92 eidaas~~gvd--~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~S- 168 (486)
T PRK14953 92 EIDAASNRGID--DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILS- 168 (486)
T ss_pred EEeCccCCCHH--HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHH-
Confidence 0000 000111 122333322 345679999998754 4566777666655555566555543 333322211
Q ss_pred ccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHH
Q 006018 292 RVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQV 345 (664)
Q Consensus 292 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 345 (664)
....+.+.+++.++..+.+...+-.... ....+.+..+++.++|.+..+..
T Consensus 169 -Rc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 169 -RCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred -hceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 3457899999999999888876632221 22335567788888887764443
No 131
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=5.5e-05 Score=84.27 Aligned_cols=179 Identities=12% Similarity=0.100 Sum_probs=107.5
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC-----cceeec-------cchhhhh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE-----GSYFMQ-------NIRDESE 224 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-----~~~~~~-------~~~~~~~ 224 (664)
...+++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-..-. .+--.. ++.+. .
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei-d 93 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM-D 93 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE-e
Confidence 5668999999999999999654 23456789999999999999999987432110 000000 00000 0
Q ss_pred cccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEe-CCHHHHHhhcCCccccE
Q 006018 225 KVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITT-RDVQLLKNHRGSRVGHV 296 (664)
Q Consensus 225 ~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTt-R~~~~~~~~~~~~~~~~ 296 (664)
........+++.+.+.+ .+++-++|+|+++.. ..+..|+..+......+.+|++| +...+...... ....
T Consensus 94 aasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~S--Rcq~ 171 (725)
T PRK07133 94 AASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILS--RVQR 171 (725)
T ss_pred ccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHh--hcee
Confidence 00001111233333333 355668899998743 46777777766544555555544 44444322221 3568
Q ss_pred EEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch
Q 006018 297 FEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL 341 (664)
Q Consensus 297 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 341 (664)
+++.+++.++..+.+...+-... .....+.+..+++.++|-+.
T Consensus 172 ieF~~L~~eeI~~~L~~il~keg--I~id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 172 FNFRRISEDEIVSRLEFILEKEN--ISYEKNALKLIAKLSSGSLR 214 (725)
T ss_pred EEccCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHH
Confidence 99999999999988877653222 11223557788889988664
No 132
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=98.05 E-value=7.1e-06 Score=72.49 Aligned_cols=89 Identities=20% Similarity=0.327 Sum_probs=47.2
Q ss_pred ceEEEeccccccccchHHHHHHHHhhC-------CCce----------eecC-CcCCCCcccHHHHHhhhcCcEEEEEec
Q 006018 16 HDVFLSFRGKDVRHNFVSHLNAALCRE-------KIET----------FIDD-KLNRGNEISPSLSSAIEGSKISIVIFS 77 (664)
Q Consensus 16 ~dvFis~~~~d~~~~f~~~l~~~l~~~-------g~~~----------~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S 77 (664)
|+|||||++.|.. ..+..|...+... .+.. +.+. +....+.|...|.++|..|.++||++|
T Consensus 1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 6899999999854 2577777777663 2211 1222 333455789999999999999999999
Q ss_pred CCcccchhhHHHHHHHHHhhhhcCceEEEEEe
Q 006018 78 EGYASSRWCLNELVKILESKNKYGQIVVPVFY 109 (664)
Q Consensus 78 ~~y~~s~wc~~El~~~~~~~~~~~~~v~pv~~ 109 (664)
++-..|+|+-.|+..+++ .+..|+-|..
T Consensus 80 ~~T~~s~wV~~EI~~A~~----~~~~Ii~V~~ 107 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALK----KGKPIIGVYL 107 (130)
T ss_dssp TT----HHHHHHHHHHTT----T---EEEEET
T ss_pred CCcccCcHHHHHHHHHHH----CCCCEEEEEC
Confidence 999999999999998775 3344666643
No 133
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=7.3e-05 Score=83.32 Aligned_cols=180 Identities=14% Similarity=0.149 Sum_probs=108.6
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC------c-ce-----eec----cch
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE------G-SY-----FMQ----NIR 220 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~------~-~~-----~~~----~~~ 220 (664)
...+++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+..... + .| |-. ++.
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~ 93 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH 93 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE
Confidence 5678999999999999998643 22456889999999999999999887532100 0 00 000 000
Q ss_pred hhhhcccchhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEe-CCHHHHHhhcCCc
Q 006018 221 DESEKVGGLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITT-RDVQLLKNHRGSR 292 (664)
Q Consensus 221 ~~~~~~~~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTt-R~~~~~~~~~~~~ 292 (664)
+... .....-.++..+.+. ..+++-++|+|+++.. +..+.|+..+......+.+|++| +...+......
T Consensus 94 ~ld~-~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S-- 170 (614)
T PRK14971 94 ELDA-ASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS-- 170 (614)
T ss_pred Eecc-cccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh--
Confidence 0000 000001112222221 2334568899998754 45777777776655666666555 44444433221
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchh
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 342 (664)
...+++..+++.++....+...+-.... ....+.+..|++.++|..--
T Consensus 171 Rc~iv~f~~ls~~ei~~~L~~ia~~egi--~i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 171 RCQIFDFNRIQVADIVNHLQYVASKEGI--TAEPEALNVIAQKADGGMRD 218 (614)
T ss_pred hhheeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 4678999999999999988876633221 22235677888888886643
No 134
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.05 E-value=7.2e-05 Score=86.95 Aligned_cols=170 Identities=16% Similarity=0.138 Sum_probs=95.9
Q ss_pred hHhhhhhccccccccCCCCCCCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC------
Q 006018 137 LIEGNVNDISKKLSDLFPSDNKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF------ 210 (664)
Q Consensus 137 ~~~~~~~~~~~~l~~~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------ 210 (664)
.+++...+...+..+ . .-+.++||+.+++++...|... ....+.++|.+|+|||++|+.++.++....
T Consensus 160 ~l~~~~~~l~~~~r~---~-~l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~ 233 (857)
T PRK10865 160 ALKKYTIDLTERAEQ---G-KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLK 233 (857)
T ss_pred HHHHHhhhHHHHHhc---C-CCCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhC
Confidence 455555554444332 2 4457999999999999988643 234567999999999999999999865422
Q ss_pred Ccceeeccchhhhhccc--chhHHhHHHHHHHh--cCceEEEEEecCCCHH----------HHHHHhccCCCCCCC-cEE
Q 006018 211 EGSYFMQNIRDESEKVG--GLANIHLNFERRRL--SRMKVLIVFYDLTDLK----------QIDLLIGRLDGFVPG-SRV 275 (664)
Q Consensus 211 ~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~L--~~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~g-s~I 275 (664)
...+|.-++........ +-.+..++.+.+.+ ...+++|++|+++... ..+.+.+.+ ..| -++
T Consensus 234 ~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l---~~g~l~~ 310 (857)
T PRK10865 234 GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---ARGELHC 310 (857)
T ss_pred CCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh---hcCCCeE
Confidence 22333333333221111 11112233333332 2468999999986542 233344433 233 345
Q ss_pred EEEeCCHHHHH----hhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 276 IITTRDVQLLK----NHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 276 liTtR~~~~~~----~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
|-+|...+... ..........+.+...+.++..+++....
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 55444333211 00000123356788889999998886543
No 135
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=0.0001 Score=82.22 Aligned_cols=182 Identities=16% Similarity=0.129 Sum_probs=108.6
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC-C------c-ceeec---------cc
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF-E------G-SYFMQ---------NI 219 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-~------~-~~~~~---------~~ 219 (664)
....++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+.... . + .+-.+ ++
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~ 92 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDV 92 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccE
Confidence 56789999999999999987542 235678999999999999999999854321 0 0 00000 00
Q ss_pred hhhhhcccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCC
Q 006018 220 RDESEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGS 291 (664)
Q Consensus 220 ~~~~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~ 291 (664)
.+.... ....-.+++.+.+.+ .+.+-++|+|+++.. +..+.|+..+......+.+|++|.+.. +.....
T Consensus 93 ~ei~~~-~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIr-- 169 (620)
T PRK14948 93 IEIDAA-SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTII-- 169 (620)
T ss_pred EEEecc-ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHH--
Confidence 000000 000011122222222 244568899999854 557777777765445555565555433 222222
Q ss_pred ccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 292 RVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 292 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
.....++...++.++....+.+.+-..... -..+.+..+++.++|.+..+.
T Consensus 170 SRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 170 SRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 135678888999999888887766322111 223557788899998775444
No 136
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.02 E-value=9.2e-05 Score=74.85 Aligned_cols=154 Identities=17% Similarity=0.158 Sum_probs=82.4
Q ss_pred CceeehhhHHHHHhhhc---C-------C---CCcceEEEEecCCCCChHHHHHHHHHHhhccC--Ccceeec-cchhhh
Q 006018 160 QLVGVESIIKEIESQLL---S-------G---STEFNTVGIWGIGGIGKTTIASAIYSNISSHF--EGSYFMQ-NIRDES 223 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~---~-------~---~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~-~~~~~~ 223 (664)
.++|.+...++|.++.. . + .....-+.++|++|+|||++|+.+++.....- ....|+. +..+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 46888777666654321 1 0 01123588999999999999998887654321 1111221 111111
Q ss_pred hcccchhHHhHHHHHHHhcCceEEEEEecCCCH-----------HHHHHHhccCCCCCCCcEEEEEeCCHHHHHhhcC--
Q 006018 224 EKVGGLANIHLNFERRRLSRMKVLIVFYDLTDL-----------KQIDLLIGRLDGFVPGSRVIITTRDVQLLKNHRG-- 290 (664)
Q Consensus 224 ~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~-- 290 (664)
....+-.......+.+.. ..-+|+||+++.. +..+.+...+.....+.+||+++...........
T Consensus 103 ~~~~g~~~~~~~~~~~~a--~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np 180 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNP 180 (284)
T ss_pred HhhcccchHHHHHHHHHc--cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCH
Confidence 111010011111111111 3468899999632 2345555555544456677777654322111100
Q ss_pred ---CccccEEEecCCCHHHHHHHHHHhh
Q 006018 291 ---SRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 291 ---~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
......+++++++.+|-.+++...+
T Consensus 181 ~L~sR~~~~i~fp~l~~edl~~I~~~~l 208 (284)
T TIGR02880 181 GFSSRVAHHVDFPDYSEAELLVIAGLML 208 (284)
T ss_pred HHHhhCCcEEEeCCcCHHHHHHHHHHHH
Confidence 0124579999999999999998876
No 137
>CHL00181 cbbX CbbX; Provisional
Probab=98.02 E-value=0.00023 Score=71.95 Aligned_cols=155 Identities=16% Similarity=0.152 Sum_probs=82.9
Q ss_pred CceeehhhHHHHHhhhc---C-------C---CCcceEEEEecCCCCChHHHHHHHHHHhhcc-C-Ccceeec-cchhhh
Q 006018 160 QLVGVESIIKEIESQLL---S-------G---STEFNTVGIWGIGGIGKTTIASAIYSNISSH-F-EGSYFMQ-NIRDES 223 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~---~-------~---~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f-~~~~~~~-~~~~~~ 223 (664)
.++|.+...++|.++.. . + ......+.++|++|+|||++|+.+++..... + ...-|+. +..+..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~ 103 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV 103 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence 46777766665544321 0 0 1123357899999999999999998874321 1 1111221 111111
Q ss_pred hcccchhHHhHHHHHHHhcCceEEEEEecCCCH-----------HHHHHHhccCCCCCCCcEEEEEeCCHHHHHhhc---
Q 006018 224 EKVGGLANIHLNFERRRLSRMKVLIVFYDLTDL-----------KQIDLLIGRLDGFVPGSRVIITTRDVQLLKNHR--- 289 (664)
Q Consensus 224 ~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~--- 289 (664)
....+-.......+.+. ...-+|++|+++.. +..+.+...+.....+.+||+++..........
T Consensus 104 ~~~~g~~~~~~~~~l~~--a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np 181 (287)
T CHL00181 104 GQYIGHTAPKTKEVLKK--AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNP 181 (287)
T ss_pred HHHhccchHHHHHHHHH--ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCH
Confidence 11100001111111111 12358999999642 334555555554455667777775433211000
Q ss_pred --CCccccEEEecCCCHHHHHHHHHHhhh
Q 006018 290 --GSRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 290 --~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
.......+..++++.+|..+++...+-
T Consensus 182 ~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 182 GLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred HHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 001456899999999999999988764
No 138
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=6.4e-05 Score=80.60 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=83.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc-cchhHHhHHHHHHHhcCceEEEEEecCCCHH---
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV-GGLANIHLNFERRRLSRMKVLIVFYDLTDLK--- 257 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~~--- 257 (664)
...+.|+|..|+|||+|++++++.+......+.++.. ....... ..+...+...+++.++ ..-+|++||+....
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~ 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh
Confidence 4568899999999999999999987654333444431 1111100 0111112223344343 34578889985432
Q ss_pred -HHHHHhccCCC-CCCCcEEEEEeCC-HH--------HHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHH
Q 006018 258 -QIDLLIGRLDG-FVPGSRVIITTRD-VQ--------LLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFL 326 (664)
Q Consensus 258 -~~~~l~~~~~~-~~~gs~IliTtR~-~~--------~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~ 326 (664)
..+.+...+.. ...|..||+||.. +. +..++. ....+++++++.++-.+++.+++-... ..-..
T Consensus 219 ~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~---~Gl~~~l~~pd~e~r~~iL~~k~~~~~--~~l~~ 293 (445)
T PRK12422 219 ATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFE---WGIAIPLHPLTKEGLRSFLERKAEALS--IRIEE 293 (445)
T ss_pred hhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhc---CCeEEecCCCCHHHHHHHHHHHHHHcC--CCCCH
Confidence 11222222111 1235578888854 21 222222 346889999999999999988773322 11223
Q ss_pred HHHHHHHHHhcCC
Q 006018 327 ELSNIVIKYANGV 339 (664)
Q Consensus 327 ~~~~~i~~~~~gl 339 (664)
++..-|++.+.+.
T Consensus 294 evl~~la~~~~~d 306 (445)
T PRK12422 294 TALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHhcCCC
Confidence 5555565555544
No 139
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.00 E-value=6.5e-05 Score=66.50 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=38.6
Q ss_pred EEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHh-cC-ceEEEEEecCCC
Q 006018 185 VGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRL-SR-MKVLIVFYDLTD 255 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L-~~-~~~LlVlDdv~~ 255 (664)
|.|+|++|+|||++|+.+++....+| +.+ +..+.......-....+..+.+.. .. ++.+|++||++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~---~~i-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPF---IEI-DGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEE---EEE-ETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGG
T ss_pred CEEECcCCCCeeHHHHHHHhhccccc---ccc-cccccccccccccccccccccccccccccceeeeeccchh
Confidence 57999999999999999999975322 111 122222111111122233222222 23 379999999863
No 140
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.00 E-value=6.8e-05 Score=87.48 Aligned_cols=154 Identities=17% Similarity=0.149 Sum_probs=89.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC------Ccceeeccchhhhhcc--cc
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF------EGSYFMQNIRDESEKV--GG 228 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~--~~ 228 (664)
..+.+|||+.+++++...|... ....+.++|.+|+|||++|+.+++++...+ ...+|..++....... .+
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g 248 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRG 248 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhh
Confidence 4457999999999999988653 234566899999999999999999865432 2233333333322111 11
Q ss_pred hhHHhHHHHHHHhc--CceEEEEEecCCCHH----------HHHHHhccCCCCCCC-cEEEEEeCCHHHHH----hhcCC
Q 006018 229 LANIHLNFERRRLS--RMKVLIVFYDLTDLK----------QIDLLIGRLDGFVPG-SRVIITTRDVQLLK----NHRGS 291 (664)
Q Consensus 229 l~~~~l~~~~~~L~--~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~g-s~IliTtR~~~~~~----~~~~~ 291 (664)
-.+..+..+.+.+. +++.+|++|+++..- ..+.+.+.+ ..| -++|-+|...+... .....
T Consensus 249 ~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---~~g~i~~IgaTt~~e~r~~~~~d~al~ 325 (852)
T TIGR03346 249 EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---ARGELHCIGATTLDEYRKYIEKDAALE 325 (852)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---hcCceEEEEeCcHHHHHHHhhcCHHHH
Confidence 11112333333332 368999999987442 223333332 233 34444444333211 00000
Q ss_pred ccccEEEecCCCHHHHHHHHHHhh
Q 006018 292 RVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 292 ~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
.....+.++..+.++..+++....
T Consensus 326 rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 326 RRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred hcCCEEEeCCCCHHHHHHHHHHHH
Confidence 123568899999999999887553
No 141
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.99 E-value=0.00012 Score=75.24 Aligned_cols=153 Identities=12% Similarity=0.098 Sum_probs=92.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccC---------------------CcceeeccchhhhhcccchhHHhHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHF---------------------EGSYFMQNIRDESEKVGGLANIHLNFERRR 240 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f---------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 240 (664)
...+.++|+.|+|||++|+.+++.+-.+- +...++.. +.. ...+.-.+++.+.+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~--~~~--~~~i~id~iR~l~~~ 97 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEP--EEA--DKTIKVDQVRELVSF 97 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec--cCC--CCCCCHHHHHHHHHH
Confidence 45688999999999999999998853221 01111110 000 001111123333332
Q ss_pred h-----cCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCHHH-HHhhcCCccccEEEecCCCHHHHHHHHH
Q 006018 241 L-----SRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDVQL-LKNHRGSRVGHVFEVKELSYNDSLTLFS 312 (664)
Q Consensus 241 L-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 312 (664)
+ .+++-++|+|+++. .+..+.++..+....+++.+|+||.+... ..... +....+.+.+++.+++.+.+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~--SRc~~~~~~~~~~~~~~~~L~ 175 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIK--SRCQQQACPLPSNEESLQWLQ 175 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHH--hhceeeeCCCcCHHHHHHHHH
Confidence 2 23344557799975 45677777777665667888888877643 22222 145689999999999999887
Q ss_pred HhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHH
Q 006018 313 RNAFGQNHPAAGFLELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 346 (664)
... . . ...+.+..++..++|.|+....+
T Consensus 176 ~~~-~-~----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 176 QAL-P-E----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred Hhc-c-c----CChHHHHHHHHHcCCCHHHHHHH
Confidence 653 1 1 11234567788999999755444
No 142
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.99 E-value=8.2e-05 Score=81.30 Aligned_cols=155 Identities=13% Similarity=0.206 Sum_probs=88.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCC-c-ceeeccchhhhhccc-chhHHhHHHHHHHhcCceEEEEEecCCCH--
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFE-G-SYFMQNIRDESEKVG-GLANIHLNFERRRLSRMKVLIVFYDLTDL-- 256 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-~-~~~~~~~~~~~~~~~-~l~~~~l~~~~~~L~~~~~LlVlDdv~~~-- 256 (664)
...+.|+|..|+|||.|++++++.....+. . +.++. ..+...... .+.+...+.+++++.+ --+|||||+...
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-aeef~~el~~al~~~~~~~f~~~y~~-~DLLlIDDIq~l~g 391 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SEEFTNEFINSIRDGKGDSFRRRYRE-MDILLVDDIQFLED 391 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHHHHHHHHHHhccHHHHHHHhhc-CCEEEEehhccccC
Confidence 346899999999999999999998765432 2 23332 222221110 1111123334444443 347888999643
Q ss_pred -HHH-HHHhccCCC-CCCCcEEEEEeCCH---------HHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCcc
Q 006018 257 -KQI-DLLIGRLDG-FVPGSRVIITTRDV---------QLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAG 324 (664)
Q Consensus 257 -~~~-~~l~~~~~~-~~~gs~IliTtR~~---------~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 324 (664)
+.+ +.+...+.. ...|..|||||+.. .+..++. ..-+++++..+.+.-.+++.+++-... ..-
T Consensus 392 ke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~---~GLvv~I~~PD~EtR~aIL~kka~~r~--l~l 466 (617)
T PRK14086 392 KESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFE---WGLITDVQPPELETRIAILRKKAVQEQ--LNA 466 (617)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhh---cCceEEcCCCCHHHHHHHHHHHHHhcC--CCC
Confidence 111 222222211 12356788888752 2333443 567899999999999999998874322 122
Q ss_pred HHHHHHHHHHHhcCCchhH
Q 006018 325 FLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 325 ~~~~~~~i~~~~~glPLal 343 (664)
..++++-|++.+.+..-.|
T Consensus 467 ~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 467 PPEVLEFIASRISRNIREL 485 (617)
T ss_pred CHHHHHHHHHhccCCHHHH
Confidence 2456666666665554333
No 143
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00014 Score=80.23 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=111.0
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-----CCcceeeccchhhhhc------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-----FEGSYFMQNIRDESEK------ 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~------ 225 (664)
...+++|-+..+++|...+..+ .-...+.++|+.|+||||+|+.+++.+... .++.. ....+.....
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~~dv~ 91 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNSLDVI 91 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCCCCeE
Confidence 5678999999999999999653 234568899999999999999999985421 11100 0000110000
Q ss_pred --cc--chhHHhHHHHHHH-----hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCcc
Q 006018 226 --VG--GLANIHLNFERRR-----LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSRV 293 (664)
Q Consensus 226 --~~--~l~~~~l~~~~~~-----L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~ 293 (664)
.+ ...-.++..+.+. ..+++-++|+|+++.. ..++.++..+....+.+.+|++|.+. .+..... ..
T Consensus 92 ~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~--SR 169 (563)
T PRK06647 92 EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK--SR 169 (563)
T ss_pred EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH--Hh
Confidence 00 0001112222211 2355668999998754 45777877776655666666666543 3322222 13
Q ss_pred ccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhH
Q 006018 294 GHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 294 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 343 (664)
...++...++.++..+.+...+..... .-..+.+..|++.++|.+..+
T Consensus 170 c~~~~f~~l~~~el~~~L~~i~~~egi--~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 170 CQHFNFRLLSLEKIYNMLKKVCLEDQI--KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred ceEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 567899999999999888877643222 223466777888888877544
No 144
>PF14516 AAA_35: AAA-like domain
Probab=97.98 E-value=0.00065 Score=70.40 Aligned_cols=185 Identities=11% Similarity=0.145 Sum_probs=104.9
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc-cCCcceeeccchhh-------------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS-HFEGSYFMQNIRDE------------- 222 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~------------- 222 (664)
+.+..|.|...-+++.+.|... ...+.|.|+-.+|||+|...+.+.... .|.++ ++. +...
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v-~id-~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCV-YID-LQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEE-EEE-eecCCCcccCCHHHHHH
Confidence 6677899996677777666532 348999999999999999999888644 33322 221 1100
Q ss_pred -----hhcccchhHH-------------h-HHHHHHHh---cCceEEEEEecCCCHHH----HHHHhccC-------CCC
Q 006018 223 -----SEKVGGLANI-------------H-LNFERRRL---SRMKVLIVFYDLTDLKQ----IDLLIGRL-------DGF 269 (664)
Q Consensus 223 -----~~~~~~l~~~-------------~-l~~~~~~L---~~~~~LlVlDdv~~~~~----~~~l~~~~-------~~~ 269 (664)
......+... . ...+.+.+ .+++++|++|+|+..-. .+.+.+.+ ...
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 0000011100 0 11233322 25799999999975321 11222211 100
Q ss_pred C-CCc-EE-EEEeCCHHHHHhhc--CCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 270 V-PGS-RV-IITTRDVQLLKNHR--GSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 270 ~-~gs-~I-liTtR~~~~~~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
. ... ++ ++.+.......... .-+....+.+++++.+|..+|...+-.. -.....+++...+||+|.-+.
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~------~~~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE------FSQEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc------CCHHHHHHHHHHHCCCHHHHH
Confidence 0 111 12 22221111111111 0123457889999999999999876421 112338889999999999999
Q ss_pred HHhhhcCC
Q 006018 345 VLGSYLKG 352 (664)
Q Consensus 345 ~~a~~l~~ 352 (664)
.++..+..
T Consensus 238 ~~~~~l~~ 245 (331)
T PF14516_consen 238 KACYLLVE 245 (331)
T ss_pred HHHHHHHH
Confidence 99998843
No 145
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.95 E-value=6.9e-06 Score=77.69 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=35.5
Q ss_pred CceeehhhHHHHHhhhc-CCCCcceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 160 QLVGVESIIKEIESQLL-SGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
.||||+++++++...+. ......+.+.|+|.+|+|||+|.++++.++..+
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 223447899999999999999999999997776
No 146
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.95 E-value=0.00014 Score=79.98 Aligned_cols=176 Identities=18% Similarity=0.187 Sum_probs=94.2
Q ss_pred CCCCceeehhhHHHHHhhhc---C-------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLL---S-------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~---~-------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
.-.+++|.+...+++.+.+. . +....+-+.++|++|+|||+||++++......|- ..+..+.....
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~----~i~~~~~~~~~ 128 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFF----SISGSDFVEMF 128 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCee----eccHHHHHHHH
Confidence 44567888877766655442 1 1122345889999999999999999987533321 11111111111
Q ss_pred cchhHHhHH-HHHHHhcCceEEEEEecCCCHH----------------HHHHHhccCCCC--CCCcEEEEEeCCHHHHHh
Q 006018 227 GGLANIHLN-FERRRLSRMKVLIVFYDLTDLK----------------QIDLLIGRLDGF--VPGSRVIITTRDVQLLKN 287 (664)
Q Consensus 227 ~~l~~~~l~-~~~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IliTtR~~~~~~~ 287 (664)
.+.....+. .+.......+.+|++|+++... .+..++..+... ..+..||.||...+....
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~ 208 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDP 208 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCH
Confidence 111112222 2223334567899999996531 122333333222 233455556655432211
Q ss_pred --hcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCC
Q 006018 288 --HRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGV 339 (664)
Q Consensus 288 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl 339 (664)
......+..+.++..+.++-.++|..+.-...... ......+++.+.|.
T Consensus 209 al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~ 259 (495)
T TIGR01241 209 ALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGF 259 (495)
T ss_pred HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCC
Confidence 11112567899999999999999987763222111 11233566666653
No 147
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.93 E-value=6.9e-05 Score=83.83 Aligned_cols=48 Identities=27% Similarity=0.349 Sum_probs=39.6
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++..
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 556799999999998877743 234579999999999999999988764
No 148
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00033 Score=71.63 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=110.0
Q ss_pred CCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc---------------CCcceeeccchhhh
Q 006018 159 DQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH---------------FEGSYFMQNIRDES 223 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------------f~~~~~~~~~~~~~ 223 (664)
.+++|.+..++.+...+..+ .-.....++|+.|+||+++|..+++.+-.. ++...|+.......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 46899999999999998654 224688999999999999999999884321 22223332110000
Q ss_pred h---------cc-------cchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeC
Q 006018 224 E---------KV-------GGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTR 280 (664)
Q Consensus 224 ~---------~~-------~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR 280 (664)
. .. ..+.-.+.+.+.+.+ .+.+-++|+|+++.. ...+.++..+.... .+.+|++|.
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 0 00 001111233444443 345678899998754 45667777665544 445655554
Q ss_pred CH-HHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHH
Q 006018 281 DV-QLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 281 ~~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 346 (664)
+. .+.....+ ....+++.+++.++..+.+...... . ........++..++|.|..+..+
T Consensus 162 ~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~--~---~~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDE--E---ILNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhcc--c---cchhHHHHHHHHcCCCHHHHHHH
Confidence 43 33333322 4678999999999999999876421 1 11111357889999999765543
No 149
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.00021 Score=71.38 Aligned_cols=203 Identities=18% Similarity=0.209 Sum_probs=116.0
Q ss_pred CCCCceeehhhHHHHHhhhcCC-----------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLSG-----------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
.-..+=|-++.+++|.+.+... -...+=|.+||++|.|||-||++++++....|-.++=- +...+
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS----ElVqK 224 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS----ELVQK 224 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH----HHHHH
Confidence 3455668888888888776422 12356689999999999999999999976655322111 11111
Q ss_pred ccchhHHhHHHHHHHh-cCceEEEEEecCCCHH----------------HHHHHhccCCCCCC--CcEEEEEeCCHHHHH
Q 006018 226 VGGLANIHLNFERRRL-SRMKVLIVFYDLTDLK----------------QIDLLIGRLDGFVP--GSRVIITTRDVQLLK 286 (664)
Q Consensus 226 ~~~l~~~~l~~~~~~L-~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~--gs~IliTtR~~~~~~ 286 (664)
.-+-...-+..+.+.- ...+.+|.+|.++... ..-+|+..+..|.+ ..|||..|--.+++.
T Consensus 225 YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LD 304 (406)
T COG1222 225 YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILD 304 (406)
T ss_pred HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccC
Confidence 1110011112222222 3468999999986432 12345555555544 458888776444432
Q ss_pred --hhcCCccccEEEecCCCHHHHHHHHHHhhhCCCC-CCccHHHHHHHHHHHhcCCc----hhHHHHhhhc--CC----C
Q 006018 287 --NHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNH-PAAGFLELSNIVIKYANGVP----LALQVLGSYL--KG----M 353 (664)
Q Consensus 287 --~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~glP----Lal~~~a~~l--~~----~ 353 (664)
.+.....+..++++.-+.+.-.+.|.-|+-+-.- ..-+++. +++.+.|.- -|+.+=|+++ |. .
T Consensus 305 PALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~sGAdlkaictEAGm~AiR~~R~~V 380 (406)
T COG1222 305 PALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGFSGADLKAICTEAGMFAIRERRDEV 380 (406)
T ss_pred hhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCCchHHHHHHHHHHhHHHHHhccCee
Confidence 1222236788999877777777888877633221 2233433 445555543 3444445554 21 2
Q ss_pred CHHHHHHHHHHhhc
Q 006018 354 SEEEWESAVNKLKR 367 (664)
Q Consensus 354 ~~~~w~~~l~~l~~ 367 (664)
+.+++.++.++.-.
T Consensus 381 t~~DF~~Av~KV~~ 394 (406)
T COG1222 381 TMEDFLKAVEKVVK 394 (406)
T ss_pred cHHHHHHHHHHHHh
Confidence 67888887777543
No 150
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00033 Score=77.56 Aligned_cols=181 Identities=14% Similarity=0.085 Sum_probs=106.8
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC----Ccceeeccchhhhhcc------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF----EGSYFMQNIRDESEKV------ 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f----~~~~~~~~~~~~~~~~------ 226 (664)
...+++|.+..++.+...+..+. -...+.++|+.|+|||++|+.+++.+...- ..+--....+......
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~e 92 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIE 92 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEE
Confidence 66789999999999999987542 345677899999999999999988753211 0000000001000000
Q ss_pred --c--chhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeC-CHHHHHhhcCCccc
Q 006018 227 --G--GLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTR-DVQLLKNHRGSRVG 294 (664)
Q Consensus 227 --~--~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR-~~~~~~~~~~~~~~ 294 (664)
+ ...-.+++.+.+.. .+++-++|+|+++.. ..+..|+..+........+|++|. ...+..... ...
T Consensus 93 idaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~--SRc 170 (559)
T PRK05563 93 IDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL--SRC 170 (559)
T ss_pred eeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH--hHh
Confidence 0 00001222333332 345668899999854 567777777665444555555554 333322221 135
Q ss_pred cEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchh
Q 006018 295 HVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 295 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 342 (664)
..++...++.++..+.+...+-..+.. -..+.+..+++.++|.+..
T Consensus 171 ~~~~f~~~~~~ei~~~L~~i~~~egi~--i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 171 QRFDFKRISVEDIVERLKYILDKEGIE--YEDEALRLIARAAEGGMRD 216 (559)
T ss_pred eEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 678899999999988887766322211 1235567778888877653
No 151
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.00036 Score=72.63 Aligned_cols=131 Identities=17% Similarity=0.239 Sum_probs=82.7
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc--ccchhHHhHHHHHHHhcCceEEEEEecCCCHH-
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK--VGGLANIHLNFERRRLSRMKVLIVFYDLTDLK- 257 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~--~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~~- 257 (664)
....+.|||..|.|||.|++++.+......+....+..-.+.+.. ...+.+...+.+++.. .-=++++||++-..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 467899999999999999999999987777643333211221111 1122233355666666 34478889985421
Q ss_pred --H-HHHHhccCCC-CCCCcEEEEEeCC---------HHHHHhhcCCccccEEEecCCCHHHHHHHHHHhhh
Q 006018 258 --Q-IDLLIGRLDG-FVPGSRVIITTRD---------VQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 258 --~-~~~l~~~~~~-~~~gs~IliTtR~---------~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
. -+.+...+.. ...|..||+|++. +++..+.. ..-++++.+++.+.....+.+.+-
T Consensus 190 k~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~---~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 KERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLE---WGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred ChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHh---ceeEEeeCCCCHHHHHHHHHHHHH
Confidence 1 1222222211 1234489999963 34455555 567899999999999999988763
No 152
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00012 Score=81.43 Aligned_cols=178 Identities=12% Similarity=0.115 Sum_probs=105.2
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-C----Cc-ceeec---------cchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-F----EG-SYFMQ---------NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f----~~-~~~~~---------~~~~ 221 (664)
...++||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+... . ++ .+..+ ++.+
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~e 92 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFE 92 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeee
Confidence 6678999999999999998653 224567899999999999999999885321 1 00 00000 0000
Q ss_pred hhhcccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC-HHHHHhhcCCcc
Q 006018 222 ESEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRD-VQLLKNHRGSRV 293 (664)
Q Consensus 222 ~~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~-~~~~~~~~~~~~ 293 (664)
.. ......-.+++.+.+.+ .+++-++|+|+++.. ...+.|+..+....+.+.+|++|.+ ..+...... .
T Consensus 93 id-~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~S--R 169 (576)
T PRK14965 93 ID-GASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS--R 169 (576)
T ss_pred ee-ccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHH--h
Confidence 00 00000011222333322 234567889999754 4567777777655556666655543 434332221 3
Q ss_pred ccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCc
Q 006018 294 GHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVP 340 (664)
Q Consensus 294 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP 340 (664)
...++...++.++..+.+...+-.... .-..+.+..+++.++|..
T Consensus 170 c~~~~f~~l~~~~i~~~L~~i~~~egi--~i~~~al~~la~~a~G~l 214 (576)
T PRK14965 170 CQRFDFRRIPLQKIVDRLRYIADQEGI--SISDAALALVARKGDGSM 214 (576)
T ss_pred hhhhhcCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCCH
Confidence 567889999999988888765532221 122355667788888755
No 153
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.85 E-value=0.00011 Score=83.46 Aligned_cols=152 Identities=16% Similarity=0.167 Sum_probs=87.4
Q ss_pred CCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc------CCcceeeccchhhhhccc--ch
Q 006018 158 KDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH------FEGSYFMQNIRDESEKVG--GL 229 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~~~~~~~~~~~--~l 229 (664)
.+.++||+.+++++.+.|.... ..-+.++|.+|+|||++|+.+++++... .....|..+......... +-
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge 262 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGD 262 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhh
Confidence 3468999999999999886532 3445789999999999999999885332 123333333322221111 11
Q ss_pred hHHhHHHHHHHh-cCceEEEEEecCCCH----------HHH-HHHhccCCCCCCCcEEEEEeCCHHHHH------hhcCC
Q 006018 230 ANIHLNFERRRL-SRMKVLIVFYDLTDL----------KQI-DLLIGRLDGFVPGSRVIITTRDVQLLK------NHRGS 291 (664)
Q Consensus 230 ~~~~l~~~~~~L-~~~~~LlVlDdv~~~----------~~~-~~l~~~~~~~~~gs~IliTtR~~~~~~------~~~~~ 291 (664)
-+..++.+.+.+ +..+.+|++|+++.. .+. ..+.+.+.. ..-++|-+|...+... ....
T Consensus 263 ~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgATt~~E~~~~~~~D~AL~r- 339 (758)
T PRK11034 263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALAR- 339 (758)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecCChHHHHHHhhccHHHHh-
Confidence 111233333333 345789999998643 112 223333321 2234444444333211 0111
Q ss_pred ccccEEEecCCCHHHHHHHHHHhh
Q 006018 292 RVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 292 ~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
....+.++.++.+++.+++....
T Consensus 340 -RFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 340 -RFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred -hCcEEEeCCCCHHHHHHHHHHHH
Confidence 23579999999999999987553
No 154
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.84 E-value=7.6e-05 Score=66.08 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=54.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhcc-----CCcceeeccchhh------------hhccc-c-hhHHh-HHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSH-----FEGSYFMQNIRDE------------SEKVG-G-LANIH-LNFERRRL 241 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~------------~~~~~-~-l~~~~-l~~~~~~L 241 (664)
.+.+.|+|.+|+|||++++.+++..... -..++|+..-... ..... . ....+ .+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4688999999999999999999986543 1223344211111 00000 1 01111 34556666
Q ss_pred cCce-EEEEEecCCCH---HHHHHHhccCCCCCCCcEEEEEeCC
Q 006018 242 SRMK-VLIVFYDLTDL---KQIDLLIGRLDGFVPGSRVIITTRD 281 (664)
Q Consensus 242 ~~~~-~LlVlDdv~~~---~~~~~l~~~~~~~~~gs~IliTtR~ 281 (664)
.+.+ .+||+|+++.. +.++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 5544 59999999765 33455544333 667788887764
No 155
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.83 E-value=1.3e-05 Score=79.35 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=89.6
Q ss_pred CcCcccEEEcCCCCCCccccccc-------cccccccccccccccc--------------ccccCCCCCCcEEeecCCCC
Q 006018 487 NLDSLKELYLGGCSNLKRFPEIS-------CNIEDLDLKETAIEEL--------------PSSIGNLSRLVDLDLTNCSG 545 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~-------~~L~~L~l~~~~i~~l--------------p~~~~~l~~L~~L~l~~~~~ 545 (664)
.++.|+.|+||.|-+-...+..+ .+|++|+|.+|.+... ..-+++-+.|+++.... +.
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cc
Confidence 36688999999987654433322 2788899999887522 22345677899988886 45
Q ss_pred CCccc-----cccCCCCCCCEEeeeCCCCCCc----cccccCCCCCCCEEEccCCCCc-----cccccccCCCCCCEEee
Q 006018 546 LKSVS-----SRLCNLKSLRRLNLSGCLKLEK----LPEEIGNLESLEYLNLAEKDFE-----KIPSSMKQLSKLSDLRL 611 (664)
Q Consensus 546 l~~lp-----~~~~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~l~~n~i~-----~lp~~i~~L~~L~~L~L 611 (664)
+.+-+ ..+...+.|+.+.++.|.+... +...+..+++|+.|||..|-++ .+...+..+++|+.|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 55443 3355668888888888775432 2345678889999999999887 33445667788899999
Q ss_pred cCCCC
Q 006018 612 QNCKR 616 (664)
Q Consensus 612 ~~~~~ 616 (664)
++|.+
T Consensus 249 ~dcll 253 (382)
T KOG1909|consen 249 GDCLL 253 (382)
T ss_pred ccccc
Confidence 98865
No 156
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.81 E-value=0.00025 Score=76.61 Aligned_cols=157 Identities=15% Similarity=0.163 Sum_probs=87.8
Q ss_pred CCCCceeehhhHHHHHhhh---cC-----CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccc
Q 006018 157 NKDQLVGVESIIKEIESQL---LS-----GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGG 228 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L---~~-----~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 228 (664)
...++.|.+...+.+.... .. +-...+-|.++|++|+|||.+|+++++.+.-.| +.-+.........+
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vG 301 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVG 301 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccC
Confidence 3456788877666665421 10 112346689999999999999999999864332 11112222222212
Q ss_pred hhHHhHHHHHH-HhcCceEEEEEecCCCHHH--------------HHHHhccCCCCCCCcEEEEEeCCHHHHH-h-hcCC
Q 006018 229 LANIHLNFERR-RLSRMKVLIVFYDLTDLKQ--------------IDLLIGRLDGFVPGSRVIITTRDVQLLK-N-HRGS 291 (664)
Q Consensus 229 l~~~~l~~~~~-~L~~~~~LlVlDdv~~~~~--------------~~~l~~~~~~~~~gs~IliTtR~~~~~~-~-~~~~ 291 (664)
-.+..+..+.+ .-...+++|++|+++..-. +..+...+.....+.-||.||.+.+... . ....
T Consensus 302 ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~G 381 (489)
T CHL00195 302 ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKG 381 (489)
T ss_pred hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCC
Confidence 22222332222 2234789999999974210 1122222222233344566776554211 1 1111
Q ss_pred ccccEEEecCCCHHHHHHHHHHhhhC
Q 006018 292 RVGHVFEVKELSYNDSLTLFSRNAFG 317 (664)
Q Consensus 292 ~~~~~~~l~~L~~~ea~~Lf~~~a~~ 317 (664)
..+..+.++..+.++-.++|..+..+
T Consensus 382 RFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 382 RFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 36778999999999999999887643
No 157
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.81 E-value=8.3e-07 Score=75.82 Aligned_cols=106 Identities=23% Similarity=0.358 Sum_probs=68.6
Q ss_pred ccEEEcCCCCCCcccccccc------cccccccccccccccccccC-CCCCCcEEeecCCCCCCccccccCCCCCCCEEe
Q 006018 491 LKELYLGGCSNLKRFPEISC------NIEDLDLKETAIEELPSSIG-NLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLN 563 (664)
Q Consensus 491 L~~L~l~~~~~~~~~p~~~~------~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 563 (664)
+..++|+.|.. ..+++... .|+..+|++|.++.+|+.+. .++.++.|+|.+ +.+..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence 44567777753 33333222 45566777777777777654 345677777775 45667776677777777777
Q ss_pred eeCCCCCCccccccCCCCCCCEEEccCCCCcccccc
Q 006018 564 LSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS 599 (664)
Q Consensus 564 L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~ 599 (664)
++.|. +...|..+..|.+|-.|+..+|.+..+|..
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 77776 445566666677777777777777766654
No 158
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.78 E-value=0.0004 Score=80.15 Aligned_cols=155 Identities=18% Similarity=0.240 Sum_probs=90.6
Q ss_pred CCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
.-.++.|.+...++|.+.+.. +-...+-|.++|++|+|||++|+++++.....| +.....+....
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~l~~~ 526 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPEILSK 526 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHHHhhc
Confidence 345678888888877776531 112244588999999999999999999865433 11112222222
Q ss_pred ccchhHHhHHHHHHH-hcCceEEEEEecCCCHH--------------HHHHHhccCCCC--CCCcEEEEEeCCHHHHHhh
Q 006018 226 VGGLANIHLNFERRR-LSRMKVLIVFYDLTDLK--------------QIDLLIGRLDGF--VPGSRVIITTRDVQLLKNH 288 (664)
Q Consensus 226 ~~~l~~~~l~~~~~~-L~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~~--~~gs~IliTtR~~~~~~~~ 288 (664)
..+-.+..+..+.+. -...+.+|++|+++... ....++..+... ..+.-||.||..++.....
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPA 606 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHh
Confidence 222222223333322 24567999999986431 133444444432 2334455577655443211
Q ss_pred c--CCccccEEEecCCCHHHHHHHHHHhh
Q 006018 289 R--GSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 289 ~--~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
- ....+..+.++..+.++-.++|..+.
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHT 635 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHh
Confidence 1 11356789999999999999997665
No 159
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=3.2e-05 Score=53.53 Aligned_cols=34 Identities=29% Similarity=0.540 Sum_probs=21.3
Q ss_pred CCCEEEccCCCCccccccccCCCCCCEEeecCCC
Q 006018 582 SLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCK 615 (664)
Q Consensus 582 ~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~ 615 (664)
+|++|++++|+|+.+|+.+.+|++|+.|++++|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 5666666666666666666666666666666654
No 160
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.76 E-value=0.00032 Score=80.98 Aligned_cols=155 Identities=16% Similarity=0.209 Sum_probs=86.6
Q ss_pred CCCCceeehhhHHHHHhhhcCC-----------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLSG-----------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
..+++.|.+..++++.+.+... -...+.|.++|++|+|||+||+.+++.....| +.+ +..+....
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i-~~~~i~~~ 251 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISI-NGPEIMSK 251 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEE-ecHHHhcc
Confidence 4567899999999988776321 12245688999999999999999998865433 111 11111111
Q ss_pred ccchhHHhHH-HHHHHhcCceEEEEEecCCCHH-------------HHHHHhccCCCCC-CCcEEEE-EeCCHHHH-Hhh
Q 006018 226 VGGLANIHLN-FERRRLSRMKVLIVFYDLTDLK-------------QIDLLIGRLDGFV-PGSRVII-TTRDVQLL-KNH 288 (664)
Q Consensus 226 ~~~l~~~~l~-~~~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~-~gs~Ili-TtR~~~~~-~~~ 288 (664)
..+-....+. .+.......+.+|+||+++... ....+...+.... .+..++| ||....-. ...
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al 331 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPAL 331 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHH
Confidence 1111122232 2233334567899999985421 1233333333222 2333444 45433211 111
Q ss_pred c-CCccccEEEecCCCHHHHHHHHHHhh
Q 006018 289 R-GSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 289 ~-~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
. .......+.++..+.++-.+++..+.
T Consensus 332 ~r~gRfd~~i~i~~P~~~~R~~Il~~~~ 359 (733)
T TIGR01243 332 RRPGRFDREIVIRVPDKRARKEILKVHT 359 (733)
T ss_pred hCchhccEEEEeCCcCHHHHHHHHHHHh
Confidence 1 01135578888889998888888654
No 161
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.0012 Score=67.44 Aligned_cols=169 Identities=14% Similarity=0.143 Sum_probs=98.9
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC--Cc-----ceeec-----cchhh--h-hccc-----
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF--EG-----SYFMQ-----NIRDE--S-EKVG----- 227 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~-----~~~~~-----~~~~~--~-~~~~----- 227 (664)
.+.+...+..+ .-...+.++|+.|+||+++|..+++.+-..- ++ +-++. ++... . ...+
T Consensus 13 ~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~ 91 (319)
T PRK08769 13 YDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRT 91 (319)
T ss_pred HHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccc
Confidence 44555555432 2244688999999999999999998743211 10 00110 01000 0 0000
Q ss_pred chhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCccccEEEe
Q 006018 228 GLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRVGHVFEV 299 (664)
Q Consensus 228 ~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~~l 299 (664)
.+.-.+++.+.+.+ .+++-++|+|+++.+ .....++..+....+++.+|++|.+.+ +..... +....+.+
T Consensus 92 ~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIr--SRCq~i~~ 169 (319)
T PRK08769 92 EIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIR--SRCQRLEF 169 (319)
T ss_pred cccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHH--hhheEeeC
Confidence 01111233333333 245668899999865 456777777766667888888777543 332222 14668899
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHh
Q 006018 300 KELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLG 347 (664)
Q Consensus 300 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a 347 (664)
..++.+++.+.+.... . . ...+..++..++|.|+....+.
T Consensus 170 ~~~~~~~~~~~L~~~~----~-~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 170 KLPPAHEALAWLLAQG----V-S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred CCcCHHHHHHHHHHcC----C-C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999998886531 1 1 2336678899999998665443
No 162
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=4.5e-05 Score=52.79 Aligned_cols=40 Identities=40% Similarity=0.611 Sum_probs=28.6
Q ss_pred CCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccc
Q 006018 557 KSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIP 597 (664)
Q Consensus 557 ~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp 597 (664)
++|++|++++|. +..+|..+++|++|+.|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 467788888777 4467767788888888888888877665
No 163
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.0011 Score=69.15 Aligned_cols=187 Identities=16% Similarity=0.215 Sum_probs=103.7
Q ss_pred CCCCceeehhhHHHHHhhhcCC--CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcc--eeec---------cchhhh
Q 006018 157 NKDQLVGVESIIKEIESQLLSG--STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGS--YFMQ---------NIRDES 223 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~--~~~~---------~~~~~~ 223 (664)
.+..+.+||++++++...|..- +....-+.|+|.+|+|||+.++.+++++....... +++. .+....
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 4455999999999998877531 11223389999999999999999999976654333 3332 111112
Q ss_pred hccc-----chhHHh-HHHHHHHhc--CceEEEEEecCCCHHH-----HHHHhccCCCCCCCcEE--EEEeCCHHHHHhh
Q 006018 224 EKVG-----GLANIH-LNFERRRLS--RMKVLIVFYDLTDLKQ-----IDLLIGRLDGFVPGSRV--IITTRDVQLLKNH 288 (664)
Q Consensus 224 ~~~~-----~l~~~~-l~~~~~~L~--~~~~LlVlDdv~~~~~-----~~~l~~~~~~~~~gs~I--liTtR~~~~~~~~ 288 (664)
.... +....+ ++.+.+.+. ++.+++|||+++.... +-.+....... .++| |..+-+.......
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHh
Confidence 2111 122222 445555554 4789999999975432 22333322222 4444 3344433322222
Q ss_pred c----CCccccEEEecCCCHHHHHHHHHHhh---hCCCCCCccHHHHHHHHHHHhcC-CchhHHH
Q 006018 289 R----GSRVGHVFEVKELSYNDSLTLFSRNA---FGQNHPAAGFLELSNIVIKYANG-VPLALQV 345 (664)
Q Consensus 289 ~----~~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~g-lPLal~~ 345 (664)
. ..-....+..++-+.+|-.+.+..++ |......++.-+++..++..-+| -=.||.+
T Consensus 173 d~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidi 237 (366)
T COG1474 173 DPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDI 237 (366)
T ss_pred hhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHH
Confidence 1 11112336778888888888887775 33344444444555555554453 3344443
No 164
>PRK08181 transposase; Validated
Probab=97.67 E-value=0.00011 Score=73.19 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=51.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccc-hhHHhHHHHHHHhcCceEEEEEecCCCH----H
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGG-LANIHLNFERRRLSRMKVLIVFYDLTDL----K 257 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~L~~~~~LlVlDdv~~~----~ 257 (664)
..+.++|++|+|||.||.++++....+...+.|+. ..+....... ..+.......+.+. +.-||||||+... .
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~~~l~~a~~~~~~~~~l~~l~-~~dLLIIDDlg~~~~~~~ 184 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLVQKLQVARRELQLESAIAKLD-KFDLLILDDLAYVTKDQA 184 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHHHHHHHHHhCCcHHHHHHHHh-cCCEEEEeccccccCCHH
Confidence 45899999999999999999998765544455543 2222211100 00011222223332 3458999998532 2
Q ss_pred HHHHHhccCCCCCCCcEEEEEeCC
Q 006018 258 QIDLLIGRLDGFVPGSRVIITTRD 281 (664)
Q Consensus 258 ~~~~l~~~~~~~~~gs~IliTtR~ 281 (664)
..+.+...+.....+..+||||..
T Consensus 185 ~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 185 ETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCC
Confidence 222233322211112468888874
No 165
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.64 E-value=7.3e-06 Score=88.09 Aligned_cols=136 Identities=26% Similarity=0.335 Sum_probs=78.6
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccC
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAE 590 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 590 (664)
++..|++.+|.|+.+...+..+.+|++|++++| .+..+. .+..++.|+.|++++|.+ ..+ ..+..+.+|+.+++++
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLI-SDI-SGLESLKSLKLLDLSY 171 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhheeccCcc-hhc-cCCccchhhhcccCCc
Confidence 566666777777666555666777777777764 344443 355566677777777663 222 2344566777777777
Q ss_pred CCCcccccc-ccCCCCCCEEeecCCCCCCcCC----------CCCCCCEEeeeCC---C--CCccccCCCcccccC
Q 006018 591 KDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLP----------ELPCGSSIHARHC---T--SLKTLSNSSTLLTRS 650 (664)
Q Consensus 591 n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp----------~l~~~~~l~~~~~---~--~L~~L~ls~N~l~~~ 650 (664)
|.+..++.. +..+.+|+.+++.+|.+...-. .++......+.++ . .|+.+++++|++...
T Consensus 172 n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 172 NRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred chhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc
Confidence 777766543 4666677777777665422111 0111111112222 2 288999999998864
No 166
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.63 E-value=0.0006 Score=72.28 Aligned_cols=135 Identities=19% Similarity=0.166 Sum_probs=83.0
Q ss_pred hhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHhcCce
Q 006018 166 SIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRLSRMK 245 (664)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L~~~~ 245 (664)
.-+.++.+.+.... .++.|.|+-++||||+++.+.....+. .+++... +.......+.+ .+....+.-..++
T Consensus 24 ~~~~~l~~~~~~~~---~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~-d~~~~~~~l~d-~~~~~~~~~~~~~ 95 (398)
T COG1373 24 KLLPRLIKKLDLRP---FIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFD-DLRLDRIELLD-LLRAYIELKEREK 95 (398)
T ss_pred hhhHHHHhhcccCC---cEEEEECCccccHHHHHHHHHhhCCcc---eEEEEec-chhcchhhHHH-HHHHHHHhhccCC
Confidence 44455555553322 289999999999999997766665444 2332211 11111111111 1111222112277
Q ss_pred EEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHHH-----hhcCCccccEEEecCCCHHHHHHHH
Q 006018 246 VLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLLK-----NHRGSRVGHVFEVKELSYNDSLTLF 311 (664)
Q Consensus 246 ~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~-----~~~~~~~~~~~~l~~L~~~ea~~Lf 311 (664)
..++||.|.....|+.....+.+.++. +|++|+-+..... ...+ ....+++.+|+..|-..+-
T Consensus 96 ~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~G--R~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 96 SYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAG--RGKDLELYPLSFREFLKLK 163 (398)
T ss_pred ceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCC--CceeEEECCCCHHHHHhhc
Confidence 899999999999999988887766666 8999887654432 2222 3567899999999887653
No 167
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.62 E-value=8e-05 Score=76.50 Aligned_cols=40 Identities=23% Similarity=0.123 Sum_probs=33.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc-cCCcceeeccchh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS-HFEGSYFMQNIRD 221 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~ 221 (664)
-...+|+|++|+||||||+.+|+.+.. +|+..+|+..+.+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE 209 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE 209 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC
Confidence 457889999999999999999998654 7999989865544
No 168
>PRK08116 hypothetical protein; Validated
Probab=97.58 E-value=0.00023 Score=71.23 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=53.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc-chh---HHhHHHHHHHhcCceEEEEEecCC--CH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG-GLA---NIHLNFERRRLSRMKVLIVFYDLT--DL 256 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~l~---~~~l~~~~~~L~~~~~LlVlDdv~--~~ 256 (664)
..+.++|.+|+|||.||.++++.+..+...++++. ..+...... ... ......+.+.+.+-. ||||||+. ..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d-lLviDDlg~e~~ 192 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-FPQLLNRIKSTYKSSGKEDENEIIRSLVNAD-LLILDDLGAERD 192 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHHHHHHhccccccHHHHHHHhcCCC-EEEEecccCCCC
Confidence 35889999999999999999999776543444443 322221110 000 011223344455444 89999993 22
Q ss_pred HHH--HHHhccCCC-CCCCcEEEEEeCC
Q 006018 257 KQI--DLLIGRLDG-FVPGSRVIITTRD 281 (664)
Q Consensus 257 ~~~--~~l~~~~~~-~~~gs~IliTtR~ 281 (664)
..| +.+...+.. ...+..+||||..
T Consensus 193 t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 193 TEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 222 223322221 2345678898874
No 169
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0022 Score=65.50 Aligned_cols=165 Identities=10% Similarity=0.107 Sum_probs=97.1
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC-----Cc-cee----ec-----cchhhhhccc-chhHH
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF-----EG-SYF----MQ-----NIRDESEKVG-GLANI 232 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-----~~-~~~----~~-----~~~~~~~~~~-~l~~~ 232 (664)
+.+.+.+..+ .-.....+.|+.|+||+++|+.+++.+-..- .+ .+- +. ++.......+ .+.-.
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id 90 (325)
T PRK06871 12 QQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVD 90 (325)
T ss_pred HHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHH
Confidence 4455555432 2235677999999999999999998743211 00 110 00 0000000000 11111
Q ss_pred hHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCccccEEEecCCCH
Q 006018 233 HLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRVGHVFEVKELSY 304 (664)
Q Consensus 233 ~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~~l~~L~~ 304 (664)
+.+.+.+.+ .+++-++|+|+++.+ .....++..+....+++.+|++|.+.+ +..... +....+.+.+++.
T Consensus 91 ~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~--SRC~~~~~~~~~~ 168 (325)
T PRK06871 91 QVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY--SRCQTWLIHPPEE 168 (325)
T ss_pred HHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH--hhceEEeCCCCCH
Confidence 233333333 345668889999855 457788888777677788888887653 332222 1466899999999
Q ss_pred HHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhH
Q 006018 305 NDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 305 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 343 (664)
++..+.+..... .+ ...+..++..++|.|+..
T Consensus 169 ~~~~~~L~~~~~-----~~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 169 QQALDWLQAQSS-----AE--ISEILTALRINYGRPLLA 200 (325)
T ss_pred HHHHHHHHHHhc-----cC--hHHHHHHHHHcCCCHHHH
Confidence 999998876541 11 123556788899999633
No 170
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.56 E-value=4.2e-06 Score=71.60 Aligned_cols=131 Identities=19% Similarity=0.260 Sum_probs=94.9
Q ss_pred cccccccccccccccc---ccCCCCCCcEEeecCCCCCCccccccCC-CCCCCEEeeeCCCCCCccccccCCCCCCCEEE
Q 006018 512 IEDLDLKETAIEELPS---SIGNLSRLVDLDLTNCSGLKSVSSRLCN-LKSLRRLNLSGCLKLEKLPEEIGNLESLEYLN 587 (664)
Q Consensus 512 L~~L~l~~~~i~~lp~---~~~~l~~L~~L~l~~~~~l~~lp~~~~~-l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 587 (664)
+-.++|+++.+-.++. .+.....|...+|++ +.+..+|..|.. ++.++.|+|++|. +..+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcc
Confidence 4467888887765554 455667788889997 567777766654 5689999999988 778999999999999999
Q ss_pred ccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCC
Q 006018 588 LAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 588 l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
++.|.+...|.-+..|.+|..|+..+|.+ ..+|. .+-..+..-..++.++.+.+..|
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~-~eid~-------dl~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENAR-AEIDV-------DLFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCcc-ccCcH-------HHhccccHHHHHhcCCcccccCc
Confidence 99999999998888899999999887543 33443 11112223334456666665443
No 171
>PRK09183 transposase/IS protein; Provisional
Probab=97.56 E-value=0.00012 Score=72.75 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=49.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc-chhHHhHHHHHHHhcCceEEEEEecCCC----HH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG-GLANIHLNFERRRLSRMKVLIVFYDLTD----LK 257 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~L~~~~~LlVlDdv~~----~~ 257 (664)
..+.|+|++|+|||+||..++......-..+.|+. ..+...... ......+....+......-++|+||+.. .+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~~~~~~ 181 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQE 181 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccCCCChH
Confidence 46889999999999999999887544332333432 122111100 0000012122222123456999999853 22
Q ss_pred HHHHHhccCCC-CCCCcEEEEEeCC
Q 006018 258 QIDLLIGRLDG-FVPGSRVIITTRD 281 (664)
Q Consensus 258 ~~~~l~~~~~~-~~~gs~IliTtR~ 281 (664)
+.+.+...+.. ...+ .+||||..
T Consensus 182 ~~~~lf~li~~r~~~~-s~iiTsn~ 205 (259)
T PRK09183 182 EANLFFQVIAKRYEKG-SMILTSNL 205 (259)
T ss_pred HHHHHHHHHHHHHhcC-cEEEecCC
Confidence 22233333221 1234 47888874
No 172
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.54 E-value=0.0011 Score=67.33 Aligned_cols=71 Identities=14% Similarity=0.181 Sum_probs=45.6
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHH----HHH--hcCceEEEEEecC
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFE----RRR--LSRMKVLIVFYDL 253 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~--L~~~~~LlVlDdv 253 (664)
.-.+.++|||++|+|||.+|+++++.....| +.-+..+......+-.+..+..+ .+. -+.++++|++|++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 3467899999999999999999999875543 22233344333333333322222 222 2467999999998
Q ss_pred C
Q 006018 254 T 254 (664)
Q Consensus 254 ~ 254 (664)
+
T Consensus 222 D 222 (413)
T PLN00020 222 D 222 (413)
T ss_pred h
Confidence 6
No 173
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.00037 Score=67.44 Aligned_cols=259 Identities=17% Similarity=0.187 Sum_probs=135.4
Q ss_pred CCCCceeehhhHHHHHhhhcC---CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESIIKEIESQLLS---GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
...+|||.+...+.+.=.+.. .....-.|.++|++|.||||||.-+++.+...+... ......+. .+
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK~-----gD 93 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEKP-----GD 93 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccCh-----hh
Confidence 667899999988888766643 223366799999999999999999999865543221 00111111 12
Q ss_pred HHHHHHHhcCceEEEEEecCCCHHH-H-HHHhccCCC--------CCCCc-----------EEEEEeCCHHHHHhhcCCc
Q 006018 234 LNFERRRLSRMKVLIVFYDLTDLKQ-I-DLLIGRLDG--------FVPGS-----------RVIITTRDVQLLKNHRGSR 292 (664)
Q Consensus 234 l~~~~~~L~~~~~LlVlDdv~~~~~-~-~~l~~~~~~--------~~~gs-----------~IliTtR~~~~~~~~~~~~ 292 (664)
+..+...|+... ++.+|.+..... . +.+.+...+ .++++ -|=.|||--.+...... .
T Consensus 94 laaiLt~Le~~D-VLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd-R 171 (332)
T COG2255 94 LAAILTNLEEGD-VLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD-R 171 (332)
T ss_pred HHHHHhcCCcCC-eEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH-h
Confidence 333333344444 455687754321 1 222222211 12333 34458885433222221 1
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcCCCCHHHHHHHHHH--hhcCCC
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLKGMSEEEWESAVNK--LKRMPH 370 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~~~~~~~w~~~l~~--l~~~~~ 370 (664)
...+.+++--+.+|-.+...+.+..- ..+-.++.+.+|+++..|-|.-..-+-+..+ ++..+-.. +.....
T Consensus 172 FGi~~rlefY~~~eL~~Iv~r~a~~l--~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR-----Dfa~V~~~~~I~~~ia 244 (332)
T COG2255 172 FGIIQRLEFYTVEELEEIVKRSAKIL--GIEIDEEAALEIARRSRGTPRIANRLLRRVR-----DFAQVKGDGDIDRDIA 244 (332)
T ss_pred cCCeeeeecCCHHHHHHHHHHHHHHh--CCCCChHHHHHHHHhccCCcHHHHHHHHHHH-----HHHHHhcCCcccHHHH
Confidence 45678888899999999998877221 1223346688999999999965443333332 11111000 000000
Q ss_pred CcccceeeeecCCCChhhhhhhhhcccccCC--CCHHHHHHHHHHcCCcccccc-ceecccceeeee
Q 006018 371 MDIQKVLKVSYDGLDDEEQNIFLDTACFFKG--NDQYLVMNFLDACRFSAKIGI-SRLVGKSLVTIS 434 (664)
Q Consensus 371 ~~i~~~l~~sy~~L~~~~k~~~l~la~f~~~--~~~~~~~~~~~~~~~~~~~~l-~~L~~~~li~~~ 434 (664)
......+.+--.+|+.-.++.+..+.-.+.| ...+.+...+.......+..+ -.|++.|+++..
T Consensus 245 ~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RT 311 (332)
T COG2255 245 DKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRT 311 (332)
T ss_pred HHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhhC
Confidence 1122233333456666666666655554433 334444444332222112111 236667776665
No 174
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.52 E-value=0.00013 Score=66.34 Aligned_cols=64 Identities=22% Similarity=0.397 Sum_probs=54.9
Q ss_pred eEEEeccccccc-cchHHHHHHHHhhC-CCceeecC-CcCC--CCcccHHHHHhhhcCcEEEEEecCCc
Q 006018 17 DVFLSFRGKDVR-HNFVSHLNAALCRE-KIETFIDD-KLNR--GNEISPSLSSAIEGSKISIVIFSEGY 80 (664)
Q Consensus 17 dvFis~~~~d~~-~~f~~~l~~~l~~~-g~~~~~d~-~~~~--g~~~~~~~~~~i~~s~~~i~v~S~~y 80 (664)
-|||||+++... ...|..|+..|++. |+.|.+|. +... +..+...+.+.++++..+|+|.||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 499999995533 35689999999999 99999998 7643 77899999999999999999999655
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.52 E-value=0.0012 Score=73.35 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=42.5
Q ss_pred CCCCceeehhhHHHHHhhhcCCC---CcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGS---TEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~---~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...+++|.+..++++..++.... ...+++.|+|++|+||||+++.++....
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 67789999999999999886432 2346799999999999999999998753
No 176
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.51 E-value=0.00024 Score=65.22 Aligned_cols=101 Identities=24% Similarity=0.305 Sum_probs=47.0
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccc--cccCCCCCCCEEEc
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLP--EEIGNLESLEYLNL 588 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p--~~l~~l~~L~~L~l 588 (664)
+...+||++|.+..++ .+..+..|.+|.+..|.....-|.--..+++|+.|.|.+|++. .+- ..+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeee
Confidence 3444555665555443 2445555566655544333322322223445555555555521 111 12334455555555
Q ss_pred cCCCCccccc----cccCCCCCCEEeecC
Q 006018 589 AEKDFEKIPS----SMKQLSKLSDLRLQN 613 (664)
Q Consensus 589 ~~n~i~~lp~----~i~~L~~L~~L~L~~ 613 (664)
-+|.++..+. -+..+++|+.||..+
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 5555553332 244555555555543
No 177
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.48 E-value=0.00032 Score=62.52 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=43.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhh-------------hcccchhHHhHHHHHHHhcCc-eEEE
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDES-------------EKVGGLANIHLNFERRRLSRM-KVLI 248 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-------------~~~~~l~~~~l~~~~~~L~~~-~~Ll 248 (664)
..+.|+|++|+||||+|+.++..........+++..-.... ...............+..... ..++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 47899999999999999999998766542333332111000 000011111233334444443 4999
Q ss_pred EEecCCCHH
Q 006018 249 VFYDLTDLK 257 (664)
Q Consensus 249 VlDdv~~~~ 257 (664)
++|++....
T Consensus 83 iiDei~~~~ 91 (148)
T smart00382 83 ILDEITSLL 91 (148)
T ss_pred EEECCcccC
Confidence 999997653
No 178
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0011 Score=65.28 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=50.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH----hhccCCcceeec-cchhh----hhcccchhHHhHHHHHHHhcCceE--EEEE
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN----ISSHFEGSYFMQ-NIRDE----SEKVGGLANIHLNFERRRLSRMKV--LIVF 250 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~----~~~~f~~~~~~~-~~~~~----~~~~~~l~~~~l~~~~~~L~~~~~--LlVl 250 (664)
.++|.++|+||.|||+|.++++++ ..+.|.....++ +.... +...+.+-..-.+++.+.+.++.. .+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 578999999999999999999998 345566655554 22222 233334444456777777777654 4456
Q ss_pred ecCCCH
Q 006018 251 YDLTDL 256 (664)
Q Consensus 251 Ddv~~~ 256 (664)
|.|++.
T Consensus 257 DEVESL 262 (423)
T KOG0744|consen 257 DEVESL 262 (423)
T ss_pred HHHHHH
Confidence 998754
No 179
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.46 E-value=3.9e-05 Score=82.45 Aligned_cols=127 Identities=23% Similarity=0.303 Sum_probs=96.5
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccC
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAE 590 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 590 (664)
.++.+.++.|.+..+-..+..+++|..|++.+| .+..+...+..+++|++|++++|.+.. + ..+..+..|+.|++++
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~-i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITK-L-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheecccccccc-c-cchhhccchhhheecc
Confidence 566777888888875556788999999999985 566666447889999999999998544 3 2567778899999999
Q ss_pred CCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccc
Q 006018 591 KDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 591 n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~ 648 (664)
|.|..++ .+..+++|+.+++++|.....-+. . ...+.+|+.+++.+|.+.
T Consensus 150 N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~------~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 150 NLISDIS-GLESLKSLKLLDLSYNRIVDIEND------E-LSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccchhcc-CCccchhhhcccCCcchhhhhhhh------h-hhhccchHHHhccCCchh
Confidence 9999886 566799999999999765433221 0 245677777777777765
No 180
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.45 E-value=0.00019 Score=70.62 Aligned_cols=39 Identities=26% Similarity=0.100 Sum_probs=32.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc-cCCcceeeccch
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS-HFEGSYFMQNIR 220 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~ 220 (664)
...++|.|++|+|||||++.+++.... +|+..+|+..+.
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~ 55 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLID 55 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEcc
Confidence 457899999999999999999998654 688888876333
No 181
>PRK10536 hypothetical protein; Provisional
Probab=97.44 E-value=0.00068 Score=66.00 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=41.9
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH-h-hccCCcceee
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN-I-SSHFEGSYFM 216 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~~ 216 (664)
....+.+|......+..++.. ...|.+.|.+|.|||+||.+++.+ + .+.|...+..
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~ 110 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVT 110 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEe
Confidence 335567888888888888753 348999999999999999998885 3 4455555444
No 182
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0035 Score=64.76 Aligned_cols=166 Identities=14% Similarity=0.143 Sum_probs=98.4
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc--C---Ccc-e----eec-----cchhhhhcc--cchhH
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH--F---EGS-Y----FMQ-----NIRDESEKV--GGLAN 231 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--f---~~~-~----~~~-----~~~~~~~~~--~~l~~ 231 (664)
+++...+..+ .-.....+.|+.|+||+++|.+++..+-.. - .+. + ++. ++....... ..+.-
T Consensus 12 ~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~i 90 (334)
T PRK07993 12 EQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGV 90 (334)
T ss_pred HHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCH
Confidence 4455555432 224567899999999999999999874321 0 110 0 000 111010000 01111
Q ss_pred HhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCccccEEEecCCC
Q 006018 232 IHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRVGHVFEVKELS 303 (664)
Q Consensus 232 ~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~~l~~L~ 303 (664)
.+.+.+.+.+ .+++-++|+|+++.+ .....++..+....+++.+|++|.+.+ +.....+ ....+.+.+++
T Consensus 91 dqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS--RCq~~~~~~~~ 168 (334)
T PRK07993 91 DAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS--RCRLHYLAPPP 168 (334)
T ss_pred HHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh--ccccccCCCCC
Confidence 2333344433 345668899998754 457788888777677788877777654 3333221 35678999999
Q ss_pred HHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 304 YNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 304 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
.+++.+.+.... . . ..+.+..++..++|.|....
T Consensus 169 ~~~~~~~L~~~~---~--~--~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 169 EQYALTWLSREV---T--M--SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHHHHHHHHHcc---C--C--CHHHHHHHHHHcCCCHHHHH
Confidence 999998886532 1 1 12336678899999996433
No 183
>PRK06526 transposase; Provisional
Probab=97.42 E-value=0.0002 Score=70.81 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=23.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
...+.|+|++|+|||+||..+.......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 3468999999999999999998885543
No 184
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0031 Score=65.26 Aligned_cols=146 Identities=12% Similarity=0.156 Sum_probs=90.4
Q ss_pred Ccee-ehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc---------------------CCcceeec
Q 006018 160 QLVG-VESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH---------------------FEGSYFMQ 217 (664)
Q Consensus 160 ~~vG-r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------------------f~~~~~~~ 217 (664)
.++| -+..++.+...+..+ .-.....++|+.|+|||++|+.+++.+-.. ++...++.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 3566 666777888877543 234567899999999999999998874321 11111111
Q ss_pred cchhhhhcccchhHHhHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhc
Q 006018 218 NIRDESEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHR 289 (664)
Q Consensus 218 ~~~~~~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~ 289 (664)
. ......-.++..+.+.+ .+.+-++|+|+++.. +..+.++..+....+++.+|++|.+.. +.....
T Consensus 85 ~------~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 85 P------DGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred c------ccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 0 00011111233333332 345567899998754 456778777776667788888887643 222222
Q ss_pred CCccccEEEecCCCHHHHHHHHHHh
Q 006018 290 GSRVGHVFEVKELSYNDSLTLFSRN 314 (664)
Q Consensus 290 ~~~~~~~~~l~~L~~~ea~~Lf~~~ 314 (664)
+....+++.+++.++..+.+...
T Consensus 159 --SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 --SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred --hhceeeeCCCCCHHHHHHHHHHc
Confidence 24678999999999998888653
No 185
>PRK12377 putative replication protein; Provisional
Probab=97.41 E-value=0.00048 Score=67.68 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=41.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc-chhHH-hHHHHHHHhcCceEEEEEecC
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG-GLANI-HLNFERRRLSRMKVLIVFYDL 253 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~l~~~-~l~~~~~~L~~~~~LlVlDdv 253 (664)
...+.++|.+|+|||+||.++++.+......+.++. +.+...... ..... ....+.+.+ .+--||||||+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-~~~l~~~l~~~~~~~~~~~~~l~~l-~~~dLLiIDDl 172 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-VPDVMSRLHESYDNGQSGEKFLQEL-CKVDLLVLDEI 172 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-HHHHHHHHHHHHhccchHHHHHHHh-cCCCEEEEcCC
Confidence 357899999999999999999999776554455553 222211110 00000 111222223 34568999999
No 186
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.40 E-value=0.0014 Score=60.35 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=75.9
Q ss_pred eehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC--------------------Ccceeeccchhh
Q 006018 163 GVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF--------------------EGSYFMQNIRDE 222 (664)
Q Consensus 163 Gr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f--------------------~~~~~~~~~~~~ 222 (664)
|-+..++.|.+.+..+ .-...+.++|..|+||+++|..+++.+-..- +...++....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~-- 77 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDK-- 77 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTT--
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccc--
Confidence 5566777777777543 2345678999999999999999998843211 1111221000
Q ss_pred hhcccchhHHhHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCHHH-HHhhcCCccc
Q 006018 223 SEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDVQL-LKNHRGSRVG 294 (664)
Q Consensus 223 ~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~~~-~~~~~~~~~~ 294 (664)
....+...++..+.+.+ .+++-++|+||++. .+....|+..+.....++++|++|++..- .....+ ..
T Consensus 78 --~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~S--Rc 153 (162)
T PF13177_consen 78 --KKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRS--RC 153 (162)
T ss_dssp --SSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHT--TS
T ss_pred --ccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHh--hc
Confidence 00012222334444443 23466889999985 45677888777766788999999987653 322221 34
Q ss_pred cEEEecCCC
Q 006018 295 HVFEVKELS 303 (664)
Q Consensus 295 ~~~~l~~L~ 303 (664)
..+.+.+|+
T Consensus 154 ~~i~~~~ls 162 (162)
T PF13177_consen 154 QVIRFRPLS 162 (162)
T ss_dssp EEEEE----
T ss_pred eEEecCCCC
Confidence 566666553
No 187
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0063 Score=67.79 Aligned_cols=179 Identities=18% Similarity=0.216 Sum_probs=106.1
Q ss_pred CCCCceeehhhHHHHHhh---hcC-------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec-cchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQ---LLS-------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ-NIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~---L~~-------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~ 225 (664)
...++.|.|+..++|.+. |.. +..-.+=|.++|++|+|||-||++++-...= -|+. .-.+....
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-----PF~svSGSEFvE~ 383 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFSVSGSEFVEM 383 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC-----ceeeechHHHHHH
Confidence 456789998876666554 432 1223566889999999999999999986322 2221 11122222
Q ss_pred ccchhHHhHHHH-HHHhcCceEEEEEecCCCH-----------------HHHHHHhccCCCCCCCcEEEE--EeCCHHHH
Q 006018 226 VGGLANIHLNFE-RRRLSRMKVLIVFYDLTDL-----------------KQIDLLIGRLDGFVPGSRVII--TTRDVQLL 285 (664)
Q Consensus 226 ~~~l~~~~l~~~-~~~L~~~~~LlVlDdv~~~-----------------~~~~~l~~~~~~~~~gs~Ili--TtR~~~~~ 285 (664)
..+.+....+.+ ...-...++++.+|+++.. ..+.+++...+.+..+..||+ +|...+++
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~l 463 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDIL 463 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCcccc
Confidence 122222222222 2223446889999987532 136677777666655554443 56555553
Q ss_pred Hh--hcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchh
Q 006018 286 KN--HRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 286 ~~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 342 (664)
.. +.....+..+.++.-+.....+.|.-|+-...-. .+..++++ ++...-|.+=|
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 21 2222467789999999999999999888432222 34445555 77777777644
No 188
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.40 E-value=0.0013 Score=63.22 Aligned_cols=100 Identities=21% Similarity=0.308 Sum_probs=62.6
Q ss_pred CCCCceeehhhHHHHHhhh---cCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESIIKEIESQL---LSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L---~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
..+.++|.|.+.+.|.+-. ..+ ....-|.+||..|+|||++++++.+.+..+- .-.++.-++.. .+
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G-~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L--------~~ 93 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQG-LPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDL--------GD 93 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcC-CCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHh--------cc
Confidence 5678999999998875432 222 3456788999999999999999999876533 11111111110 12
Q ss_pred HHHHHHHhc--CceEEEEEecCC---CHHHHHHHhccCC
Q 006018 234 LNFERRRLS--RMKVLIVFYDLT---DLKQIDLLIGRLD 267 (664)
Q Consensus 234 l~~~~~~L~--~~~~LlVlDdv~---~~~~~~~l~~~~~ 267 (664)
+..+.+.++ ..|++|++||+. .......++..+.
T Consensus 94 l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 94 LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 334455554 358999999972 3344555555443
No 189
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.011 Score=60.26 Aligned_cols=165 Identities=13% Similarity=0.165 Sum_probs=97.5
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-CC---c-ce----eec-----cchhhhhc-cc-chhHH
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-FE---G-SY----FMQ-----NIRDESEK-VG-GLANI 232 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~---~-~~----~~~-----~~~~~~~~-~~-~l~~~ 232 (664)
+.+.+.+..+ .-...+.+.|+.|+||+++|..+++.+-.. -+ + .+ .+. ++...... .+ .+.-.
T Consensus 13 ~~l~~~~~~~-rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vd 91 (319)
T PRK06090 13 QNWKAGLDAG-RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVE 91 (319)
T ss_pred HHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHH
Confidence 4455555332 224578899999999999999998873211 00 0 00 000 01000000 00 11111
Q ss_pred hHHHHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCccccEEEecCCCH
Q 006018 233 HLNFERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRVGHVFEVKELSY 304 (664)
Q Consensus 233 ~l~~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~~l~~L~~ 304 (664)
+++.+.+.+ .+++-++|+|+++.. .....++..+....+++.+|++|.+.+ +.....+ ....+.+.+++.
T Consensus 92 qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S--RCq~~~~~~~~~ 169 (319)
T PRK06090 92 QIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS--RCQQWVVTPPST 169 (319)
T ss_pred HHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh--cceeEeCCCCCH
Confidence 233333333 234568888999854 457788887777677787777777653 3333332 467899999999
Q ss_pred HHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHH
Q 006018 305 NDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 305 ~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 346 (664)
+++.+.+.... . . .+..++..++|.|+....+
T Consensus 170 ~~~~~~L~~~~----~-~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 170 AQAMQWLKGQG----I-T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HHHHHHHHHcC----C-c-----hHHHHHHHcCCCHHHHHHH
Confidence 99999886532 1 1 1346788999999876544
No 190
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.37 E-value=0.0049 Score=58.93 Aligned_cols=155 Identities=20% Similarity=0.219 Sum_probs=90.6
Q ss_pred CCCCceeehhhHHH---HHhhhcCC----CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccch
Q 006018 157 NKDQLVGVESIIKE---IESQLLSG----STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGL 229 (664)
Q Consensus 157 ~~~~~vGr~~~~~~---l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l 229 (664)
..++.||.++...+ |.+.|... .-..+.|..+|++|.|||.+|+++++...-.|-. +. ..+......+-
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~---vk-at~liGehVGd 194 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLL---VK-ATELIGEHVGD 194 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEE---ec-hHHHHHHHhhh
Confidence 45678999887665 45555432 2236789999999999999999999975433211 11 11111111111
Q ss_pred hHHhHHHHHHHh-cCceEEEEEecCCCH--------------HHHHHHhccCCCC--CCCcEEEEEeCCHHHHHhhcCCc
Q 006018 230 ANIHLNFERRRL-SRMKVLIVFYDLTDL--------------KQIDLLIGRLDGF--VPGSRVIITTRDVQLLKNHRGSR 292 (664)
Q Consensus 230 ~~~~l~~~~~~L-~~~~~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~gs~IliTtR~~~~~~~~~~~~ 292 (664)
....+..+.++- +.-++++.+|.++.. +...+|+..+... +.|...|-.|-+++.+...-...
T Consensus 195 gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsR 274 (368)
T COG1223 195 GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSR 274 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhh
Confidence 111122223322 335899999987642 2345555555432 34544555565555543332222
Q ss_pred cccEEEecCCCHHHHHHHHHHhh
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
....++..--+++|-.+++..++
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHH
Confidence 55677777788999999998887
No 191
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0035 Score=67.73 Aligned_cols=154 Identities=20% Similarity=0.259 Sum_probs=92.5
Q ss_pred CCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc
Q 006018 159 DQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG 227 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 227 (664)
+++=|.++...+|...+.- +-+..+-|..+|+||+|||++|+++++.-...|-.+ ..-+...+..
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv----kgpEL~sk~v 509 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV----KGPELFSKYV 509 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec----cCHHHHHHhc
Confidence 4444577777777755532 223467789999999999999999999866665332 0111222222
Q ss_pred chhHHhHHHHHHHh-cCceEEEEEecCCCHH-------------HHHHHhccCCCCCCCcEEEE---EeCCHHHHHhh-c
Q 006018 228 GLANIHLNFERRRL-SRMKVLIVFYDLTDLK-------------QIDLLIGRLDGFVPGSRVII---TTRDVQLLKNH-R 289 (664)
Q Consensus 228 ~l~~~~l~~~~~~L-~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs~Ili---TtR~~~~~~~~-~ 289 (664)
+-.+..+..+.+.- +--++++.||.++... .+.+++..++.......|+| |-|...+-..+ .
T Consensus 510 GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlR 589 (693)
T KOG0730|consen 510 GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLR 589 (693)
T ss_pred CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcC
Confidence 22222233222222 3357999999987532 24566666665555555555 45544332222 2
Q ss_pred CCccccEEEecCCCHHHHHHHHHHhhh
Q 006018 290 GSRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 290 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
....+..+.++.-+.+.-.++|+.++-
T Consensus 590 PGRlD~iiyVplPD~~aR~~Ilk~~~k 616 (693)
T KOG0730|consen 590 PGRLDRIIYVPLPDLEARLEILKQCAK 616 (693)
T ss_pred CcccceeEeecCccHHHHHHHHHHHHh
Confidence 223678888988888888899998873
No 192
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.30 E-value=0.0027 Score=73.13 Aligned_cols=110 Identities=15% Similarity=0.266 Sum_probs=61.7
Q ss_pred CCCceeehhhHHHHHhhhcCC-------CCcceEEEEecCCCCChHHHHHHHHHHhhccC---Ccceeec--cchhhhhc
Q 006018 158 KDQLVGVESIIKEIESQLLSG-------STEFNTVGIWGIGGIGKTTIASAIYSNISSHF---EGSYFMQ--NIRDESEK 225 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f---~~~~~~~--~~~~~~~~ 225 (664)
...++|.+..++.+...+... .....++.++|++|+|||+||+.+++.....| +..-|.. .+......
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~ 532 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGA 532 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcC
Confidence 356899999999888777531 11244688999999999999999998763321 1111111 00010000
Q ss_pred -ccchhHHhHHHHHHHhcCc-eEEEEEecCCC--HHHHHHHhccCC
Q 006018 226 -VGGLANIHLNFERRRLSRM-KVLIVFYDLTD--LKQIDLLIGRLD 267 (664)
Q Consensus 226 -~~~l~~~~l~~~~~~L~~~-~~LlVlDdv~~--~~~~~~l~~~~~ 267 (664)
.+.....+-..+.+.++.+ .-+++||+++. .+.++.+...+.
T Consensus 533 ~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 533 PPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred CCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 0000001122344444444 45999999974 344556655543
No 193
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.30 E-value=5.9e-05 Score=74.77 Aligned_cols=127 Identities=22% Similarity=0.292 Sum_probs=90.7
Q ss_pred CcccEEEcCCCCCCcccc--------ccccccccccccccccc-----ccccccCCCCCCcEEeecCCCCCCc----ccc
Q 006018 489 DSLKELYLGGCSNLKRFP--------EISCNIEDLDLKETAIE-----ELPSSIGNLSRLVDLDLTNCSGLKS----VSS 551 (664)
Q Consensus 489 ~~L~~L~l~~~~~~~~~p--------~~~~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~----lp~ 551 (664)
+.|+++....|+. ...+ ...+.|+.+.+..|.|. .+...+..+++|+.|||.+|..... +..
T Consensus 157 ~~Lrv~i~~rNrl-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRL-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred cceEEEEeecccc-ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 4577888887763 2222 12236777777777764 3345678899999999999865542 445
Q ss_pred ccCCCCCCCEEeeeCCCCCCccccc----c-CCCCCCCEEEccCCCCc-----cccccccCCCCCCEEeecCCCC
Q 006018 552 RLCNLKSLRRLNLSGCLKLEKLPEE----I-GNLESLEYLNLAEKDFE-----KIPSSMKQLSKLSDLRLQNCKR 616 (664)
Q Consensus 552 ~~~~l~~L~~L~L~~~~~~~~~p~~----l-~~l~~L~~L~l~~n~i~-----~lp~~i~~L~~L~~L~L~~~~~ 616 (664)
.++.+++|+.|+++.|.....-... + ...++|+.|.|.+|.|+ .+..++...+.|..|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6778899999999999754432222 2 34689999999999998 3444667788999999999876
No 194
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0015 Score=70.27 Aligned_cols=177 Identities=15% Similarity=0.166 Sum_probs=104.7
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc----cCCcceeeccchhhhhc-ccchhH
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS----HFEGSYFMQNIRDESEK-VGGLAN 231 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~----~f~~~~~~~~~~~~~~~-~~~l~~ 231 (664)
..+++||-+.....|...+..+. -..--...|+-|+||||+|+.++..+-. ..+.+--.....+.... ..++.+
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviE 92 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIE 92 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchh
Confidence 55678999999999999986542 2334567899999999999999987321 11111111111111111 012222
Q ss_pred H---------hHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCccc
Q 006018 232 I---------HLNFERRRL-----SRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSRVG 294 (664)
Q Consensus 232 ~---------~l~~~~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~~ 294 (664)
. +.+.+.+.. .++.-+.|+|.|.- ...+..++..+....+....|+.|.+. .+....- +..
T Consensus 93 iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl--SRc 170 (515)
T COG2812 93 IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL--SRC 170 (515)
T ss_pred hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh--hcc
Confidence 2 123344433 34455888999964 456888888876555555556555543 3322221 146
Q ss_pred cEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcC
Q 006018 295 HVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANG 338 (664)
Q Consensus 295 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g 338 (664)
+.|....++.++-...+...+-... -....+....|++...|
T Consensus 171 q~f~fkri~~~~I~~~L~~i~~~E~--I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 171 QRFDFKRLDLEEIAKHLAAILDKEG--INIEEDALSLIARAAEG 212 (515)
T ss_pred ccccccCCCHHHHHHHHHHHHHhcC--CccCHHHHHHHHHHcCC
Confidence 7899999999988888877763222 22233445555555555
No 195
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.27 E-value=0.0011 Score=62.74 Aligned_cols=111 Identities=20% Similarity=0.236 Sum_probs=56.4
Q ss_pred ehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH--hhccCCcceeeccchhhhhccc----chhHH-----
Q 006018 164 VESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN--ISSHFEGSYFMQNIRDESEKVG----GLANI----- 232 (664)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~----~l~~~----- 232 (664)
+..+-....+.|. +..+|.+.|++|.|||.||.+.+-+ ...+|+..++....-+.....+ .+.+.
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTT
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 4444455555554 4568999999999999999988866 3467777777654433322222 11111
Q ss_pred --------------hHHHHHH----------HhcCc---eEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC
Q 006018 233 --------------HLNFERR----------RLSRM---KVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRD 281 (664)
Q Consensus 233 --------------~l~~~~~----------~L~~~---~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~ 281 (664)
.++.+.+ .++++ ..++|+|++.+. +++..++. ..+.||||+++--.
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilT---R~g~~skii~~GD~ 155 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILT---RIGEGSKIIITGDP 155 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHT---TB-TT-EEEEEE--
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHc---ccCCCcEEEEecCc
Confidence 0111111 12222 579999999654 56666654 45789999998764
No 196
>PRK06921 hypothetical protein; Provisional
Probab=97.23 E-value=0.00069 Score=67.66 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=40.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhcc-CCcceeeccchhhhhccc-chhHHhHHHHHHHhcCceEEEEEecC
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSH-FEGSYFMQNIRDESEKVG-GLANIHLNFERRRLSRMKVLIVFYDL 253 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~L~~~~~LlVlDdv 253 (664)
...+.++|.+|+|||.||.++++.+..+ ...++|+.. .+...... .. .......+.+. +--||||||+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~-~~l~~~l~~~~--~~~~~~~~~~~-~~dlLiIDDl 186 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF-VEGFGDLKDDF--DLLEAKLNRMK-KVEVLFIDDL 186 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH-HHHHHHHHHHH--HHHHHHHHHhc-CCCEEEEecc
Confidence 4578999999999999999999997665 344455542 11111100 00 01112222332 3468999999
No 197
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.22 E-value=0.00022 Score=66.64 Aligned_cols=72 Identities=22% Similarity=0.215 Sum_probs=39.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccc-hhHHhHHHHHHHhcCceEEEEEecCCC
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGG-LANIHLNFERRRLSRMKVLIVFYDLTD 255 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-l~~~~l~~~~~~L~~~~~LlVlDdv~~ 255 (664)
..-+.++|.+|+|||.||.++++....+-..+.|+. ..+....... -.....+...+.+.+ -=||||||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-~~~L~~~l~~~~~~~~~~~~~~~l~~-~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-ASDLLDELKQSRSDGSYEELLKRLKR-VDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-HHHHHHHHHCCHCCTTHCHHHHHHHT-SSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-cCceeccccccccccchhhhcCcccc-ccEecccccce
Confidence 346899999999999999999998655433445543 2222211110 000112223334443 34778999853
No 198
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.22 E-value=0.0047 Score=69.86 Aligned_cols=130 Identities=19% Similarity=0.201 Sum_probs=72.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHH-HHHHHhcCceEEEEEecCCCHH----
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLN-FERRRLSRMKVLIVFYDLTDLK---- 257 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~L~~~~~LlVlDdv~~~~---- 257 (664)
+-|.|+|++|+|||++|+.++......|- .....+......+.....+. .+.......+++|++|+++...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~----~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~ 261 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF----TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRG 261 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE----EEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccC
Confidence 34899999999999999999887654331 11111111111111111121 2222334468899999986541
Q ss_pred ------------HHHHHhccCCCCC--CCcEEEEEeCCHHHHHhh--cCCccccEEEecCCCHHHHHHHHHHhhh
Q 006018 258 ------------QIDLLIGRLDGFV--PGSRVIITTRDVQLLKNH--RGSRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 258 ------------~~~~l~~~~~~~~--~gs~IliTtR~~~~~~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
.+..++..+..+. .+.-+|.||..++..... .....+..+.++..+.++-.+++..+.-
T Consensus 262 ~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 262 AGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred CCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 1233333333322 233445577665543221 1112567888998998888888887763
No 199
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.22 E-value=0.00089 Score=65.61 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=48.1
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc-chh--HHhHHHHHHHhcCc
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG-GLA--NIHLNFERRRLSRM 244 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~l~--~~~l~~~~~~L~~~ 244 (664)
+..+.+....-......+.++|.+|+|||+||.++++.....-..+.++. +.+...... ... +.....+.+.+. +
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-~~~l~~~l~~~~~~~~~~~~~~l~~l~-~ 162 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-VADIMSAMKDTFSNSETSEEQLLNDLS-N 162 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-HHHHHHHHHHHHhhccccHHHHHHHhc-c
Confidence 34444444322223457889999999999999999999766544445543 222221111 000 111223344455 3
Q ss_pred eEEEEEecCCC
Q 006018 245 KVLIVFYDLTD 255 (664)
Q Consensus 245 ~~LlVlDdv~~ 255 (664)
.-+|||||+..
T Consensus 163 ~dlLvIDDig~ 173 (244)
T PRK07952 163 VDLLVIDEIGV 173 (244)
T ss_pred CCEEEEeCCCC
Confidence 45788899843
No 200
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0037 Score=65.60 Aligned_cols=128 Identities=20% Similarity=0.168 Sum_probs=77.0
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHH-hH----HHHHHHhcCceEEEEEecCC
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANI-HL----NFERRRLSRMKVLIVFYDLT 254 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~-~l----~~~~~~L~~~~~LlVlDdv~ 254 (664)
.....+.+.|++|+|||+||..++.. ..|+.+-.+. ..+. -++.+. .. +...+..+..=-.||+||++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS-pe~m----iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiE 608 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS-PEDM----IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIE 608 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC-hHHc----cCccHHHHHHHHHHHHHHhhcCcceEEEEcchh
Confidence 34567889999999999999999874 4666544432 1110 011111 11 23344556667799999997
Q ss_pred CHHHHH------------HHhccCCCC-CCCcEE--EEEeCCHHHHHhhcCC-ccccEEEecCCCH-HHHHHHHHHh
Q 006018 255 DLKQID------------LLIGRLDGF-VPGSRV--IITTRDVQLLKNHRGS-RVGHVFEVKELSY-NDSLTLFSRN 314 (664)
Q Consensus 255 ~~~~~~------------~l~~~~~~~-~~gs~I--liTtR~~~~~~~~~~~-~~~~~~~l~~L~~-~ea~~Lf~~~ 314 (664)
..-+|- .|+-.++.. ..|-|. +-||....++..++.. -....+.++.++. ++..+.++..
T Consensus 609 rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 609 RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc
Confidence 655432 222222222 234444 4477778888777621 1345688999987 6777777654
No 201
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.19 E-value=0.00066 Score=62.48 Aligned_cols=106 Identities=21% Similarity=0.171 Sum_probs=53.4
Q ss_pred CCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccc--cccCCCCCCEEe
Q 006018 533 SRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS--SMKQLSKLSDLR 610 (664)
Q Consensus 533 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~--~i~~L~~L~~L~ 610 (664)
.+...+||++|. +..++ .+..++.|.+|.|++|.+...-|.--.-+++|+.|.|.+|+|.++-. -+..+++|++|.
T Consensus 42 d~~d~iDLtdNd-l~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDND-LRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccc-hhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345556666533 33333 45566666666666666444444333344556666666666664421 245556666666
Q ss_pred ecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCC
Q 006018 611 LQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSS 644 (664)
Q Consensus 611 L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~ 644 (664)
+-+|+.... .......+...++|+.||.+.
T Consensus 120 ll~Npv~~k----~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHK----KNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcc----cCceeEEEEecCcceEeehhh
Confidence 665543211 111223344555555555543
No 202
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.19 E-value=0.0006 Score=70.57 Aligned_cols=38 Identities=21% Similarity=0.038 Sum_probs=32.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhcc-CCcceeeccc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSH-FEGSYFMQNI 219 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~ 219 (664)
-..++|+|++|+|||||++.+++.+... |+..+|+..+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLI 206 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLI 206 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEc
Confidence 4578999999999999999999986655 8888887654
No 203
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0041 Score=66.45 Aligned_cols=130 Identities=20% Similarity=0.263 Sum_probs=79.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHh-cCceEEEEEecCCCH-----
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRL-SRMKVLIVFYDLTDL----- 256 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L-~~~~~LlVlDdv~~~----- 256 (664)
.=|.+||++|+|||-||+++++....+|-.+ . --+...+..+-.+..++.+.++- ..-+++|.+|.++..
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFisV---K-GPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~ 621 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANFISV---K-GPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRS 621 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCceEee---c-CHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccC
Confidence 3478999999999999999999977666221 1 11112222122222233333333 346999999998642
Q ss_pred --------HHHHHHhccCCCC--CCCcEEEEEeCCHHHHH--hhcCCccccEEEecCCCHHHHHHHHHHhhh
Q 006018 257 --------KQIDLLIGRLDGF--VPGSRVIITTRDVQLLK--NHRGSRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 257 --------~~~~~l~~~~~~~--~~gs~IliTtR~~~~~~--~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
....+|+..+... ..|.-||-.|-.+++.. .......+..+-|+.-+.+|-.++++...-
T Consensus 622 ~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 622 DEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred CCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 1245666666544 24555555554444422 122223577888888999999999988773
No 204
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.16 E-value=0.0016 Score=75.52 Aligned_cols=52 Identities=21% Similarity=0.374 Sum_probs=39.4
Q ss_pred CCceeehhhHHHHHhhhcC----CCCcceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 159 DQLVGVESIIKEIESQLLS----GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
...+|.+...++|.+++.. +....+++.++|++|+|||++|+.+++.....|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3578888888888775531 222345799999999999999999999875544
No 205
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=2.2e-05 Score=76.02 Aligned_cols=151 Identities=21% Similarity=0.220 Sum_probs=84.7
Q ss_pred cCcccEEEcCCCCCCcccccccc---ccccccccc-cccccc--ccccCCCCCCcEEeecCCCCCCccccccC--CCCCC
Q 006018 488 LDSLKELYLGGCSNLKRFPEISC---NIEDLDLKE-TAIEEL--PSSIGNLSRLVDLDLTNCSGLKSVSSRLC--NLKSL 559 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~-~~i~~l--p~~~~~l~~L~~L~l~~~~~l~~lp~~~~--~l~~L 559 (664)
|.+|+.|.+.|++....+-..+. +|+.|+++. +++++. .--+.+++.|..|++++|-.....-..+. --+.|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 56667777777664433332222 677777776 334322 12345677888888888765443211111 12567
Q ss_pred CEEeeeCCCCC---CccccccCCCCCCCEEEccCC-CCc-cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCC
Q 006018 560 RRLNLSGCLKL---EKLPEEIGNLESLEYLNLAEK-DFE-KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHC 634 (664)
Q Consensus 560 ~~L~L~~~~~~---~~~p~~l~~l~~L~~L~l~~n-~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~ 634 (664)
+.|+|+||... ..+..-...+++|.+|||+.| .++ ..-..|.+++.|++|.|+.|..+- +...+.+...
T Consensus 289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~------p~~~~~l~s~ 362 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII------PETLLELNSK 362 (419)
T ss_pred hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC------hHHeeeeccC
Confidence 77788776421 122222356778888888855 343 223356678888888888886421 1223345555
Q ss_pred CCCccccCCC
Q 006018 635 TSLKTLSNSS 644 (664)
Q Consensus 635 ~~L~~L~ls~ 644 (664)
++|..||.-+
T Consensus 363 psl~yLdv~g 372 (419)
T KOG2120|consen 363 PSLVYLDVFG 372 (419)
T ss_pred cceEEEEecc
Confidence 6666665444
No 206
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.15 E-value=1.8e-05 Score=85.08 Aligned_cols=151 Identities=26% Similarity=0.308 Sum_probs=104.9
Q ss_pred cCcCcccEEEcCCCCCCcc--cccccccccccccccccccccc----cccC------CCCCCcEEeecCCCCCCcccccc
Q 006018 486 INLDSLKELYLGGCSNLKR--FPEISCNIEDLDLKETAIEELP----SSIG------NLSRLVDLDLTNCSGLKSVSSRL 553 (664)
Q Consensus 486 ~~l~~L~~L~l~~~~~~~~--~p~~~~~L~~L~l~~~~i~~lp----~~~~------~l~~L~~L~l~~~~~l~~lp~~~ 553 (664)
+.+.+|++|.+.+|.+... +-.....|+.|.-++ .+..+- ...+ ....|.+.+.++ +.+..+..++
T Consensus 106 fpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsy-N~L~~mD~SL 183 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSY-NRLVLMDESL 183 (1096)
T ss_pred ccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcch-hhHHhHHHHH
Confidence 3488999999999975331 111222555554332 222211 1111 123566777774 6677788888
Q ss_pred CCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCCCcCCCCCCCCEEeee
Q 006018 554 CNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHAR 632 (664)
Q Consensus 554 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~ 632 (664)
.-++.|+.|+|++|.+... +.+..+..|++|||++|.+..+|. +...+ .|+.|.++||.+ +++- .+.
T Consensus 184 qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l-~tL~--------gie 251 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL-TTLR--------GIE 251 (1096)
T ss_pred HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHH-Hhhh--------hHH
Confidence 8899999999999985443 378899999999999999999985 23334 499999999654 4443 367
Q ss_pred CCCCCccccCCCcccccC
Q 006018 633 HCTSLKTLSNSSTLLTRS 650 (664)
Q Consensus 633 ~~~~L~~L~ls~N~l~~~ 650 (664)
++.+|+.||+++|-|.+.
T Consensus 252 ~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred hhhhhhccchhHhhhhcc
Confidence 789999999999998753
No 207
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0053 Score=63.24 Aligned_cols=92 Identities=17% Similarity=0.272 Sum_probs=61.6
Q ss_pred CceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCC
Q 006018 243 RMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQN 319 (664)
Q Consensus 243 ~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 319 (664)
+++-++|+|+++. ......++..+....+++.+|++|.+.+ +.....+ ....+.+.+++.++..+.+....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~~~---- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAAQG---- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHHcC----
Confidence 3455888899875 4567888888877777887777666543 3333221 45789999999999999887642
Q ss_pred CCCccHHHHHHHHHHHhcCCchhHHHH
Q 006018 320 HPAAGFLELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 320 ~~~~~~~~~~~~i~~~~~glPLal~~~ 346 (664)
. . . ...++..++|.|+....+
T Consensus 205 ~-~-~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 205 V-A-D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C-C-h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 1 123577889999654433
No 208
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0075 Score=64.51 Aligned_cols=155 Identities=16% Similarity=0.194 Sum_probs=87.2
Q ss_pred CCCCceeehhhHHHHHhhhcCCC----------CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLLSGS----------TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~----------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
...++=|.+..+.+|.+++..-. ...+=|.++|++|+|||.||++++.+..-.|-.+ ..-+.....
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~i----sApeivSGv 263 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSI----SAPEIVSGV 263 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEee----cchhhhccc
Confidence 45678899999999988774311 2245688999999999999999999854433111 111222222
Q ss_pred cchhHHhHHH-HHHHhcCceEEEEEecCCCHH-------------HHHHHhccCCCCC----CCcEEEE---EeCCHHHH
Q 006018 227 GGLANIHLNF-ERRRLSRMKVLIVFYDLTDLK-------------QIDLLIGRLDGFV----PGSRVII---TTRDVQLL 285 (664)
Q Consensus 227 ~~l~~~~l~~-~~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~----~gs~Ili---TtR~~~~~ 285 (664)
.+-.++.++. +.+....-++++++|+++... -..+|+..+.... .|-.||| |+|-..+-
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 2222333333 333445579999999987421 1223333332211 1222333 55643331
Q ss_pred Hhhc-CCccccEEEecCCCHHHHHHHHHHhh
Q 006018 286 KNHR-GSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 286 ~~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
.... ....++.+.+..-+..+-.+++...+
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~ 374 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIIC 374 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHH
Confidence 1111 11256778887777777777766555
No 209
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.14 E-value=0.01 Score=59.34 Aligned_cols=38 Identities=29% Similarity=0.333 Sum_probs=27.4
Q ss_pred hHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 167 IIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 167 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.++++...+..+ +.|.|.|.+|+|||+||+.+++....
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 344455555432 35779999999999999999986533
No 210
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=9.9e-06 Score=78.30 Aligned_cols=151 Identities=23% Similarity=0.286 Sum_probs=94.4
Q ss_pred cccEEEcCCCCCCcc-cc---ccccccccccccccccc-ccccccCCCCCCcEEeecCCCCCCccc--cccCCCCCCCEE
Q 006018 490 SLKELYLGGCSNLKR-FP---EISCNIEDLDLKETAIE-ELPSSIGNLSRLVDLDLTNCSGLKSVS--SRLCNLKSLRRL 562 (664)
Q Consensus 490 ~L~~L~l~~~~~~~~-~p---~~~~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L 562 (664)
.|+.|||++...... +- ....+|+.|.+.++.+. .+-..+.+-.+|+.|+++.|+.++... --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477788886543211 11 11126788888887776 444567778889999999988776533 235678889999
Q ss_pred eeeCCCCCCccccc-cC-CCCCCCEEEccCCCCc----cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCC
Q 006018 563 NLSGCLKLEKLPEE-IG-NLESLEYLNLAEKDFE----KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTS 636 (664)
Q Consensus 563 ~L~~~~~~~~~p~~-l~-~l~~L~~L~l~~n~i~----~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~ 636 (664)
+|+.|......-.. +. --++|..|+|+|+.=. .+..-...+++|.+|||++|..++. ... -.+..++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~----~~~~kf~~ 339 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCF----QEFFKFNY 339 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHH----HHHHhcch
Confidence 99988744322111 11 1147888888865311 2222236788999999999876553 110 03455677
Q ss_pred CccccCCCcc
Q 006018 637 LKTLSNSSTL 646 (664)
Q Consensus 637 L~~L~ls~N~ 646 (664)
|++|.++.+.
T Consensus 340 L~~lSlsRCY 349 (419)
T KOG2120|consen 340 LQHLSLSRCY 349 (419)
T ss_pred heeeehhhhc
Confidence 8888888775
No 211
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=0.00021 Score=80.50 Aligned_cols=124 Identities=15% Similarity=0.222 Sum_probs=56.2
Q ss_pred CcccEEEcCCCCCCc-----cccccccccccccccccccc--ccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCE
Q 006018 489 DSLKELYLGGCSNLK-----RFPEISCNIEDLDLKETAIE--ELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRR 561 (664)
Q Consensus 489 ~~L~~L~l~~~~~~~-----~~p~~~~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 561 (664)
.+|+.|+++|..... .+...+++|+.|.+.+-.+. ++..-..++++|..||++++ .+..+ ..++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 456777777643221 12223335555555554332 22222335556666666653 33333 24555566665
Q ss_pred EeeeCCCCCC-ccccccCCCCCCCEEEccCCCCccccc-------cccCCCCCCEEeecCC
Q 006018 562 LNLSGCLKLE-KLPEEIGNLESLEYLNLAEKDFEKIPS-------SMKQLSKLSDLRLQNC 614 (664)
Q Consensus 562 L~L~~~~~~~-~~p~~l~~l~~L~~L~l~~n~i~~lp~-------~i~~L~~L~~L~L~~~ 614 (664)
|.+.+-.+.. .--..+-+|++|+.||+|......-+. .-..|++|+.||.|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 5554422111 001134455566666665443332221 1123555555555553
No 212
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.11 E-value=0.0029 Score=69.82 Aligned_cols=47 Identities=30% Similarity=0.438 Sum_probs=38.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
...+++|.+..++.+...+... ....|.|+|.+|+|||++|+.+++.
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999998776433 3356789999999999999999865
No 213
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0034 Score=68.56 Aligned_cols=152 Identities=17% Similarity=0.225 Sum_probs=88.9
Q ss_pred CCceeehhhHHHHHhhhcCC----CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc-------
Q 006018 159 DQLVGVESIIKEIESQLLSG----STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG------- 227 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~------- 227 (664)
.+-.|.++-.++|.+.|.-. .-..++++++|++|||||.|++.+++.....|-. +-+-.+++.....+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR-~sLGGvrDEAEIRGHRRTYIG 401 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR-ISLGGVRDEAEIRGHRRTYIG 401 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE-EecCccccHHHhccccccccc
Confidence 45689999888888877532 2235799999999999999999999987776632 12222333332222
Q ss_pred chhHHhHHHHHHHhcCceEEEEEecCCCHHH------HHHHhccCCCCCC-------------CcEE-EEEeCCH-H-HH
Q 006018 228 GLANIHLNFERRRLSRMKVLIVFYDLTDLKQ------IDLLIGRLDGFVP-------------GSRV-IITTRDV-Q-LL 285 (664)
Q Consensus 228 ~l~~~~l~~~~~~L~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~~-------------gs~I-liTtR~~-~-~~ 285 (664)
.+...-++.+ .....+.-+++||.++.... ..+++..++.-.+ =|.| .|+|-|. + +.
T Consensus 402 amPGrIiQ~m-kka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP 480 (782)
T COG0466 402 AMPGKIIQGM-KKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIP 480 (782)
T ss_pred cCChHHHHHH-HHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCC
Confidence 1111111122 22344677899999975421 2333333321110 1444 4455432 1 11
Q ss_pred H-hhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 286 K-NHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 286 ~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
. ... ...++++.+-+.+|-.+.-++|.
T Consensus 481 ~PLlD---RMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 481 APLLD---RMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hHHhc---ceeeeeecCCChHHHHHHHHHhc
Confidence 1 111 35689999999999888877775
No 214
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.08 E-value=0.0017 Score=64.29 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=31.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
-..++|.|.+|+||||||+.+++.++.+|+..+++.
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~ 104 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFA 104 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEE
Confidence 357899999999999999999999988887777764
No 215
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.06 E-value=0.0072 Score=70.59 Aligned_cols=107 Identities=13% Similarity=0.230 Sum_probs=60.9
Q ss_pred CCceeehhhHHHHHhhhcCC-------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc--ch
Q 006018 159 DQLVGVESIIKEIESQLLSG-------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG--GL 229 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~--~l 229 (664)
..++|.+..++.+...+... +....++.++|+.|+|||+||+.+++.....-...+.+ +..+...... .+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~i-d~se~~~~~~~~~L 646 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRI-DMSEFMEKHSVSRL 646 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEE-EhHHhhhhhhHHHH
Confidence 46889999998888777521 11234788999999999999999998754322222222 1222111000 00
Q ss_pred --------hHHhHHHHHHHhcCc-eEEEEEecCC--CHHHHHHHhccC
Q 006018 230 --------ANIHLNFERRRLSRM-KVLIVFYDLT--DLKQIDLLIGRL 266 (664)
Q Consensus 230 --------~~~~l~~~~~~L~~~-~~LlVlDdv~--~~~~~~~l~~~~ 266 (664)
...+-..+.+.++.+ .-+|+||+++ +.+.+..+...+
T Consensus 647 iG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 647 VGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred hCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 000111233333333 3689999997 455566665544
No 216
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.05 E-value=0.0063 Score=61.57 Aligned_cols=154 Identities=21% Similarity=0.276 Sum_probs=85.0
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcce-EEEEecCCCCChHHHHHHHHHHhhcc---------CCcceeeccchhhh---
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFN-TVGIWGIGGIGKTTIASAIYSNISSH---------FEGSYFMQNIRDES--- 223 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~-~v~I~G~gGiGKTtLA~~~~~~~~~~---------f~~~~~~~~~~~~~--- 223 (664)
..+.+-+|+.++..+..++...+...+ .|.|+|-+|.|||.+.+++.+....+ |.....+..+....
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~ 83 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLA 83 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccC
Confidence 456788999999999999976555444 45899999999999999999875222 22222222221111
Q ss_pred hcccchhHH---h----HHHHHH--Hhc--CceEEEEEecCCCHHHHHH-----Hh---ccCCCCCCCcEEEEEeCCHHH
Q 006018 224 EKVGGLANI---H----LNFERR--RLS--RMKVLIVFYDLTDLKQIDL-----LI---GRLDGFVPGSRVIITTRDVQL 284 (664)
Q Consensus 224 ~~~~~l~~~---~----l~~~~~--~L~--~~~~LlVlDdv~~~~~~~~-----l~---~~~~~~~~gs~IliTtR~~~~ 284 (664)
...+...+. . +..+.+ ... ++.++|||||++...+.+. +. ..++ .+. -+|+++-....
T Consensus 84 d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~-i~iils~~~~e 160 (438)
T KOG2543|consen 84 DKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPT-IVIILSAPSCE 160 (438)
T ss_pred CCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCc-eEEEEeccccH
Confidence 111111111 1 112222 122 4589999999987654321 11 1112 222 33444432221
Q ss_pred HHhh---cCCccccEEEecCCCHHHHHHHHHHh
Q 006018 285 LKNH---RGSRVGHVFEVKELSYNDSLTLFSRN 314 (664)
Q Consensus 285 ~~~~---~~~~~~~~~~l~~L~~~ea~~Lf~~~ 314 (664)
.... + -....++..+.-+.+|..+++.+.
T Consensus 161 ~~y~~n~g-~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 161 KQYLINTG-TLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHhhcccC-CCCceEEecCCCCHHHHHHHHhcC
Confidence 1111 2 112345677888999999888654
No 217
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.01 E-value=0.0071 Score=70.86 Aligned_cols=50 Identities=18% Similarity=0.365 Sum_probs=39.3
Q ss_pred CCceeehhhHHHHHhhhcCC------C-CcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 159 DQLVGVESIIKEIESQLLSG------S-TEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~------~-~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..++|.+..++.+...+... + ....++.+.|++|+|||++|+.++.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 46899999999998877532 1 12456889999999999999999987543
No 218
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.00 E-value=0.001 Score=70.04 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=41.5
Q ss_pred CCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc--cCCcceee
Q 006018 159 DQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS--HFEGSYFM 216 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~ 216 (664)
.++++.+..++.+...|... +.|.++|++|+|||++|+.+++.... .+..+.|+
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V 230 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV 230 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE
Confidence 45788888999998888643 46889999999999999999988643 34444443
No 219
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.99 E-value=0.0028 Score=73.71 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=39.0
Q ss_pred CCceeehhhHHHHHhhhcC-------CCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 159 DQLVGVESIIKEIESQLLS-------GSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..++|.+..++.+.+.+.. .+....++.++|++|+|||.||+.+++.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 4688999999988777632 1223457899999999999999999887643
No 220
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.96 E-value=0.0017 Score=66.76 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=52.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccc--hh-HHhHHHHHHHhcCceEEEEEecCCC----
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGG--LA-NIHLNFERRRLSRMKVLIVFYDLTD---- 255 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~--l~-~~~l~~~~~~L~~~~~LlVlDdv~~---- 255 (664)
..+.++|.+|+|||.||.++++.+..+-..+.|+.. .+....... .. ..+.....+.+.+ -=||||||+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~-~~l~~~l~~~~~~~~~~~~~~~~~l~~-~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA-DELIEILREIRFNNDKELEEVYDLLIN-CDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH-HHHHHHHHHHHhccchhHHHHHHHhcc-CCEEEEeccCCCCCC
Confidence 679999999999999999999997665445555542 222111100 00 0011111222322 34799999832
Q ss_pred HHHHHHHhccCCC-CCCCcEEEEEeCC
Q 006018 256 LKQIDLLIGRLDG-FVPGSRVIITTRD 281 (664)
Q Consensus 256 ~~~~~~l~~~~~~-~~~gs~IliTtR~ 281 (664)
....+.+...+.. ...+..+||||-.
T Consensus 262 ~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 262 EFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 2222333333221 1234568888873
No 221
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.025 Score=62.38 Aligned_cols=155 Identities=20% Similarity=0.203 Sum_probs=90.0
Q ss_pred CCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 158 KDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
-....|.+...+.+.+.+.. +-...+.+.++|++|.|||.||+++++.....|-.+.. .+...+.
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~----~~l~sk~ 316 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG----SELLSKW 316 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC----HHHhccc
Confidence 34555666666655544321 12345689999999999999999999965554432221 1222222
Q ss_pred cchhHHhHHH-HHHHhcCceEEEEEecCCCHH-------------HHHHHhccCCCCCCCc--EEEEEeCCHHHHHhhcC
Q 006018 227 GGLANIHLNF-ERRRLSRMKVLIVFYDLTDLK-------------QIDLLIGRLDGFVPGS--RVIITTRDVQLLKNHRG 290 (664)
Q Consensus 227 ~~l~~~~l~~-~~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs--~IliTtR~~~~~~~~~~ 290 (664)
.+-.+..+.. +....+..++.|.+|+++..- ...+++..+......+ .||-+|-.++.....-.
T Consensus 317 vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~l 396 (494)
T COG0464 317 VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALL 396 (494)
T ss_pred cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhc
Confidence 2222223332 333345678999999986422 2334444443333333 34445544433322111
Q ss_pred --CccccEEEecCCCHHHHHHHHHHhhh
Q 006018 291 --SRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 291 --~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
...+..+.++.-+.++..+.|..+.-
T Consensus 397 R~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 397 RPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred ccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 13577899999999999999998874
No 222
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.94 E-value=0.001 Score=59.49 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=58.4
Q ss_pred eeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec-cchhhhhcccchhHHhHHHHHHH
Q 006018 162 VGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ-NIRDESEKVGGLANIHLNFERRR 240 (664)
Q Consensus 162 vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~ 240 (664)
||....++++.+.+..-......|.|+|..|+||+++|+.++..-..... .|+. +..... .+.+.+
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~--~~~~~~~~~~~----------~~~l~~- 67 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANG--PFIVIDCASLP----------AELLEQ- 67 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS---CCCCCHHCTC----------HHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCC--CeEEechhhCc----------HHHHHH-
Confidence 56777777777666543344567899999999999999988876333111 1111 111100 111111
Q ss_pred hcCceEEEEEecCCCHH--HHHHHhccCCC-CCCCcEEEEEeCC
Q 006018 241 LSRMKVLIVFYDLTDLK--QIDLLIGRLDG-FVPGSRVIITTRD 281 (664)
Q Consensus 241 L~~~~~LlVlDdv~~~~--~~~~l~~~~~~-~~~gs~IliTtR~ 281 (664)
.+.--|+|+|++... ....+...+.. .....|+|.||+.
T Consensus 68 --a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 68 --AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp --CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred --cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 145567899997543 33444433321 1456799999984
No 223
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.94 E-value=0.0032 Score=72.36 Aligned_cols=153 Identities=15% Similarity=0.221 Sum_probs=85.1
Q ss_pred CCceeehhhHHHHHhhhcC----CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc-------
Q 006018 159 DQLVGVESIIKEIESQLLS----GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG------- 227 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~------- 227 (664)
.+.+|.++..++|.++|.. +.....++.++|++|+||||+|+.++......|-... +..+++.....+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~-~~~~~d~~~i~g~~~~~~g 400 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA-LGGVRDEAEIRGHRRTYIG 400 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE-cCCCCCHHHhccchhccCC
Confidence 4588999999988877753 1123568999999999999999999987655442222 111222111111
Q ss_pred chhHHhHHHHHHHhcCceEEEEEecCCCHHH------HHHHhccCCC---------------CCCCcEEEEEeCCHHHHH
Q 006018 228 GLANIHLNFERRRLSRMKVLIVFYDLTDLKQ------IDLLIGRLDG---------------FVPGSRVIITTRDVQLLK 286 (664)
Q Consensus 228 ~l~~~~l~~~~~~L~~~~~LlVlDdv~~~~~------~~~l~~~~~~---------------~~~gs~IliTtR~~~~~~ 286 (664)
.....-...+.. .....-+++||.++.... .+.+...+.. .-....+|.|+....+..
T Consensus 401 ~~~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~ 479 (784)
T PRK10787 401 SMPGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPA 479 (784)
T ss_pred CCCcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCH
Confidence 000001112222 122344788999864321 2444443321 012333444554332221
Q ss_pred hhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 287 NHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 287 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
..-. ...++++.+++.+|-.++..++.
T Consensus 480 aLl~--R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 480 PLLD--RMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HHhc--ceeeeecCCCCHHHHHHHHHHhh
Confidence 1111 24578999999999988887765
No 224
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.93 E-value=0.00035 Score=78.82 Aligned_cols=124 Identities=26% Similarity=0.301 Sum_probs=83.2
Q ss_pred cCcccEEEcCCCCCC----cccccccccccccccccccccccccccCCCCCCcEEeecCCCCCCccc--cccCCCCCCCE
Q 006018 488 LDSLKELYLGGCSNL----KRFPEISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVS--SRLCNLKSLRR 561 (664)
Q Consensus 488 l~~L~~L~l~~~~~~----~~~p~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~ 561 (664)
+|+|+.|.+++-.+. ..+-..+++|..||+++++++.+ ..+++|++|+.|.+.+-. ....+ ..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCe
Confidence 888999999884332 22334555899999999999988 678999999999888533 22211 24678999999
Q ss_pred EeeeCCCCCCcc--c----cccCCCCCCCEEEccCCCCcc--ccccccCCCCCCEEeecC
Q 006018 562 LNLSGCLKLEKL--P----EEIGNLESLEYLNLAEKDFEK--IPSSMKQLSKLSDLRLQN 613 (664)
Q Consensus 562 L~L~~~~~~~~~--p----~~l~~l~~L~~L~l~~n~i~~--lp~~i~~L~~L~~L~L~~ 613 (664)
||+|.......- . +.-..|++|+.||.|++.+.. +-.-+..-++|+.+.+-+
T Consensus 225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 999986533221 1 122458899999999988872 222233344555555443
No 225
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.012 Score=61.88 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=83.2
Q ss_pred CCCceeehhh---HHHHHhhhcCCC-------CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc
Q 006018 158 KDQLVGVESI---IKEIESQLLSGS-------TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG 227 (664)
Q Consensus 158 ~~~~vGr~~~---~~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 227 (664)
..+.-|.|+. +++|.+.|.... .=.+=|.++|++|.|||-||++++-...-.| |...-.+......
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF----F~~sGSEFdEm~V 378 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF----FYASGSEFDEMFV 378 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe----Eeccccchhhhhh
Confidence 3456678764 455566665432 2256689999999999999999987632211 1111111111111
Q ss_pred chhHHhH-HHHHHHhcCceEEEEEecCCCHH-------------HHHHHhccCCCCCCCcEEEE--EeCCHHHHH-hh-c
Q 006018 228 GLANIHL-NFERRRLSRMKVLIVFYDLTDLK-------------QIDLLIGRLDGFVPGSRVII--TTRDVQLLK-NH-R 289 (664)
Q Consensus 228 ~l~~~~l-~~~~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gs~Ili--TtR~~~~~~-~~-~ 289 (664)
+.....+ +.....-++-+++|.+|.++... .+.+++..++.+.+..-||| .|--++.+. .. .
T Consensus 379 GvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~R 458 (752)
T KOG0734|consen 379 GVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTR 458 (752)
T ss_pred cccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcC
Confidence 1111111 12223335569999999986432 35667767776665443333 333333322 11 1
Q ss_pred CCccccEEEecCCCHHHHHHHHHHhh
Q 006018 290 GSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 290 ~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
....+..+.|+.-+..--.++|..+.
T Consensus 459 PGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 459 PGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred CCccceeEecCCCCcccHHHHHHHHH
Confidence 11255667777766666666776665
No 226
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.93 E-value=0.00076 Score=58.71 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999985
No 227
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.0017 Score=64.26 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.7
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
...-+.++|.+|+|||.||.++.+++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~ 131 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLK 131 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4456899999999999999999999873
No 228
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.93 E-value=0.0016 Score=66.26 Aligned_cols=116 Identities=9% Similarity=0.112 Sum_probs=58.5
Q ss_pred eehhhHHHHHhhhcCCC--CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc-chhHHhHHHHHH
Q 006018 163 GVESIIKEIESQLLSGS--TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG-GLANIHLNFERR 239 (664)
Q Consensus 163 Gr~~~~~~l~~~L~~~~--~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~ 239 (664)
+|...+....+++..-. ...+-+.|+|..|+|||.||.++++....+-..+.|+. +.+...... ...+..+....+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-~~~l~~~lk~~~~~~~~~~~l~ 213 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-FPEFIRELKNSISDGSVKEKID 213 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-HHHHHHHHHHHHhcCcHHHHHH
Confidence 34444444444443211 13457889999999999999999999765433344442 111111100 000111222223
Q ss_pred HhcCceEEEEEecCCC--HHHHH--HHhccC-CC-CCCCcEEEEEeC
Q 006018 240 RLSRMKVLIVFYDLTD--LKQID--LLIGRL-DG-FVPGSRVIITTR 280 (664)
Q Consensus 240 ~L~~~~~LlVlDdv~~--~~~~~--~l~~~~-~~-~~~gs~IliTtR 280 (664)
.+. +-=||||||+.. ...|. .++..+ .. ...+..+|+||-
T Consensus 214 ~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 214 AVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred Hhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 333 355889999842 23342 233322 11 123456777776
No 229
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.91 E-value=0.0034 Score=73.27 Aligned_cols=122 Identities=15% Similarity=0.220 Sum_probs=69.1
Q ss_pred CCceeehhhHHHHHhhhcC-------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc------
Q 006018 159 DQLVGVESIIKEIESQLLS-------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK------ 225 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~------ 225 (664)
..++|.+..++.+...+.. .+.....+.++|+.|+|||+||+.+++.+...-...+-+ +..+....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~l 587 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSKL 587 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHHh
Confidence 5789999999998877642 112234577999999999999999998753321111111 11111000
Q ss_pred ----ccchhHHhHHHHHHHhcCce-EEEEEecCCC--HHHHHHHhccCCCC-----------CCCcEEEEEeCC
Q 006018 226 ----VGGLANIHLNFERRRLSRMK-VLIVFYDLTD--LKQIDLLIGRLDGF-----------VPGSRVIITTRD 281 (664)
Q Consensus 226 ----~~~l~~~~l~~~~~~L~~~~-~LlVlDdv~~--~~~~~~l~~~~~~~-----------~~gs~IliTtR~ 281 (664)
.+...-.+...+.+.++.++ .+++||+++. .+.++.++..+..+ ...+.||+||..
T Consensus 588 ~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 588 IGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred cCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 00000011234455555555 5888999974 34566666555432 134556667663
No 230
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.016 Score=63.11 Aligned_cols=160 Identities=18% Similarity=0.121 Sum_probs=83.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHH---hHHHHHHHhcCceEEEEEecCCCHH-
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANI---HLNFERRRLSRMKVLIVFYDLTDLK- 257 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~---~l~~~~~~L~~~~~LlVlDdv~~~~- 257 (664)
.+-|.|.|..|+|||+||+++++.+.. +..+++.-+....-....++.. -.+.+.+.+...+-+|||||++...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k--~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSK--DLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhcc--ccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 456889999999999999999998764 2333333221111111122322 2345667778889999999986321
Q ss_pred -------H----HHHHhccC----C-CCCCCc--EEEEEeCCHHHHHhh--cCCccccEEEecCCCHHHHHHHHHHhhhC
Q 006018 258 -------Q----IDLLIGRL----D-GFVPGS--RVIITTRDVQLLKNH--RGSRVGHVFEVKELSYNDSLTLFSRNAFG 317 (664)
Q Consensus 258 -------~----~~~l~~~~----~-~~~~gs--~IliTtR~~~~~~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 317 (664)
+ .+.+...+ . ....+. ++|.|.....-.... ..........++.+...+-.++++...-.
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 1 11111111 0 012233 344455433221111 01114456788888888888877655421
Q ss_pred CCCCCccHHHHHHHHHHHhcCC-chhHHH
Q 006018 318 QNHPAAGFLELSNIVIKYANGV-PLALQV 345 (664)
Q Consensus 318 ~~~~~~~~~~~~~~i~~~~~gl-PLal~~ 345 (664)
.. .....+...-+...|+|. |.-+++
T Consensus 589 -~~-~~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 589 -NL-SDITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred -hh-hhhhhHHHHHHHHhcCCccchhHHH
Confidence 11 112222333366666654 554444
No 231
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.90 E-value=0.0035 Score=56.82 Aligned_cols=101 Identities=13% Similarity=0.143 Sum_probs=55.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCccee---eccc-----hhhhhcc----------------cchhH------H
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYF---MQNI-----RDESEKV----------------GGLAN------I 232 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~---~~~~-----~~~~~~~----------------~~l~~------~ 232 (664)
..|-|++-.|.||||+|...+-+...+=..+.+ +..- ....... ....+ .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 478888999999999999988874443222222 2210 0000000 00000 0
Q ss_pred hHHHHHHHhcC-ceEEEEEecCCCHH-----HHHHHhccCCCCCCCcEEEEEeCCHH
Q 006018 233 HLNFERRRLSR-MKVLIVFYDLTDLK-----QIDLLIGRLDGFVPGSRVIITTRDVQ 283 (664)
Q Consensus 233 ~l~~~~~~L~~-~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IliTtR~~~ 283 (664)
.++..++.+.. .-=|+|||++...- ..+.+...+....++..||+|.|+..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 13344555544 44599999985331 22333333444455779999999754
No 232
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.012 Score=60.52 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=71.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccC------Cc-ce----ee-----ccchhhhh-----ccc----chhHHhHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHF------EG-SY----FM-----QNIRDESE-----KVG----GLANIHLNF 236 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~-~~----~~-----~~~~~~~~-----~~~----~l~~~~l~~ 236 (664)
...+.++|+.|+|||++|+.++..+-..- .+ .+ ++ .++..... ..+ .+.-.+++.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 45688999999999999999998843110 11 00 00 01111100 000 011112333
Q ss_pred HHHHhc-----CceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCccccEEEecCCCHHHHH
Q 006018 237 ERRRLS-----RMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRVGHVFEVKELSYNDSL 308 (664)
Q Consensus 237 ~~~~L~-----~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~~l~~L~~~ea~ 308 (664)
+.+.+. +++-++|+|+++.. .....+...+.....++.+|++|.+.. +..... .....+.+.+++.+++.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~--SRc~~~~~~~~~~~~~~ 178 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK--SRCRKMVLPAPSHEEAL 178 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH--HHhhhhcCCCCCHHHHH
Confidence 333332 33344556887643 444555554444345677788887754 332222 14678999999999999
Q ss_pred HHHHHh
Q 006018 309 TLFSRN 314 (664)
Q Consensus 309 ~Lf~~~ 314 (664)
+.+...
T Consensus 179 ~~L~~~ 184 (325)
T PRK08699 179 AYLRER 184 (325)
T ss_pred HHHHhc
Confidence 888653
No 233
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.90 E-value=0.0054 Score=63.64 Aligned_cols=146 Identities=17% Similarity=0.142 Sum_probs=83.9
Q ss_pred CceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcce---------------eeccchhhhh
Q 006018 160 QLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSY---------------FMQNIRDESE 224 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~---------------~~~~~~~~~~ 224 (664)
.++|.+....++..+.....+....+.++|++|+||||+|.++++.+........ +-.++.+...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 4577788888888877644333445899999999999999999998653321100 0112222111
Q ss_pred cccc---hhHHhHHHHHHHh-----cCceEEEEEecCCCHH--HHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCcc
Q 006018 225 KVGG---LANIHLNFERRRL-----SRMKVLIVFYDLTDLK--QIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRV 293 (664)
Q Consensus 225 ~~~~---l~~~~l~~~~~~L-----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~ 293 (664)
.... +....++.+.+.. .++.-++++|+++... ....+...+......+.+|++|.+.. +..... ..
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~--SR 159 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIR--SR 159 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhh--hc
Confidence 1111 1122233333322 2457789999998654 45666666666667788888887433 222121 23
Q ss_pred ccEEEecCCCHHHH
Q 006018 294 GHVFEVKELSYNDS 307 (664)
Q Consensus 294 ~~~~~l~~L~~~ea 307 (664)
...+.+.+.+..+.
T Consensus 160 c~~i~f~~~~~~~~ 173 (325)
T COG0470 160 CQRIRFKPPSRLEA 173 (325)
T ss_pred ceeeecCCchHHHH
Confidence 45666666444333
No 234
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0034 Score=70.33 Aligned_cols=109 Identities=15% Similarity=0.228 Sum_probs=68.6
Q ss_pred CCceeehhhHHHHHhhhcC-------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc----
Q 006018 159 DQLVGVESIIKEIESQLLS-------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG---- 227 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~---- 227 (664)
..++|.+..+..+.+.+.. .+.........|+.|||||.||++++..+.+.=+.-+-+ +.++...+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkHsVSrL 569 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKHSVSRL 569 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHHHHHHH
Confidence 5789999999998887742 223356777899999999999999998854321111111 1222211111
Q ss_pred ------chhHHhHHHHHHHhcCceE-EEEEecCC--CHHHHHHHhccCCC
Q 006018 228 ------GLANIHLNFERRRLSRMKV-LIVFYDLT--DLKQIDLLIGRLDG 268 (664)
Q Consensus 228 ------~l~~~~l~~~~~~L~~~~~-LlVlDdv~--~~~~~~~l~~~~~~ 268 (664)
-.--.+=..+-+..++++| +|.||+|+ +.+-++.++..+..
T Consensus 570 IGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 570 IGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred hCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 0001122356677788877 77789997 45667777777654
No 235
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.88 E-value=0.0008 Score=68.88 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=40.8
Q ss_pred CCceeehhhHHHHHhhhcCC----CCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 159 DQLVGVESIIKEIESQLLSG----STEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~----~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+++|.++.++++.+++... ....++++|+|++|+||||||+.+++.+.
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 37999999999998888542 23467899999999999999999998754
No 236
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.88 E-value=0.0083 Score=56.09 Aligned_cols=76 Identities=20% Similarity=0.341 Sum_probs=47.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceee--ccchhhhhccc--chhHHh----HHHHHHHhcCceEEEEEec
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM--QNIRDESEKVG--GLANIH----LNFERRRLSRMKVLIVFYD 252 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~--~~~~~~~~~~~--~l~~~~----l~~~~~~L~~~~~LlVlDd 252 (664)
...+|.+.|++|+||||+|+.++......+...+++ ..+++.....+ .....+ ...+.+.+......+|.|.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~~~ 85 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIVTT 85 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 345899999999999999999999988777777777 33444332221 011111 1233333444456777787
Q ss_pred CCCH
Q 006018 253 LTDL 256 (664)
Q Consensus 253 v~~~ 256 (664)
+...
T Consensus 86 ~~~~ 89 (176)
T PRK05541 86 ISMF 89 (176)
T ss_pred CCcH
Confidence 7543
No 237
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.012 Score=66.06 Aligned_cols=153 Identities=17% Similarity=0.157 Sum_probs=88.2
Q ss_pred CCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc-cCCc-----ceeeccchhhhhccc--ch
Q 006018 158 KDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS-HFEG-----SYFMQNIRDESEKVG--GL 229 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~-----~~~~~~~~~~~~~~~--~l 229 (664)
-+..+|||+|++++.+.|.....+.+ .++|.+|||||++|.-++.++.. +-+. .++--++........ +-
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGe 246 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGE 246 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCc
Confidence 45689999999999999976543333 46799999999999999998543 2221 122222222221111 22
Q ss_pred hHHhHHHHHHHhc-CceEEEEEecCCC-----------HHHHHHHhccCCCCCCCcEEEEEeCCHHH---HHhhcCCccc
Q 006018 230 ANIHLNFERRRLS-RMKVLIVFYDLTD-----------LKQIDLLIGRLDGFVPGSRVIITTRDVQL---LKNHRGSRVG 294 (664)
Q Consensus 230 ~~~~l~~~~~~L~-~~~~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gs~IliTtR~~~~---~~~~~~~~~~ 294 (664)
-+.-++.+.+.++ ..+++|++|.+.. .+...-+.+.+.. +.--.|=.||-++-- ..........
T Consensus 247 FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR-GeL~~IGATT~~EYRk~iEKD~AL~RRF 325 (786)
T COG0542 247 FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR-GELRCIGATTLDEYRKYIEKDAALERRF 325 (786)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhc-CCeEEEEeccHHHHHHHhhhchHHHhcC
Confidence 2223444444443 4589999999743 3334445555432 111234446643321 1100011145
Q ss_pred cEEEecCCCHHHHHHHHHH
Q 006018 295 HVFEVKELSYNDSLTLFSR 313 (664)
Q Consensus 295 ~~~~l~~L~~~ea~~Lf~~ 313 (664)
+.+.|...+.+++.+.+.-
T Consensus 326 Q~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 326 QKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred ceeeCCCCCHHHHHHHHHH
Confidence 7889999999999988754
No 238
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.80 E-value=0.00031 Score=67.32 Aligned_cols=57 Identities=23% Similarity=0.287 Sum_probs=25.2
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCC--CCCCccccccCCCCCCCEEeeeCCC
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNC--SGLKSVSSRLCNLKSLRRLNLSGCL 568 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~--~~l~~lp~~~~~l~~L~~L~L~~~~ 568 (664)
.|+.|++.+..++.+. .+..|++|+.|.++.| .....++-....+++|++|++++|.
T Consensus 44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk 102 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK 102 (260)
T ss_pred chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence 4444444444333221 2234555555555554 2223333333334555555555554
No 239
>PHA02244 ATPase-like protein
Probab=96.76 E-value=0.0045 Score=63.55 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=31.7
Q ss_pred CCceeehhhHH----HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 159 DQLVGVESIIK----EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 159 ~~~vGr~~~~~----~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
..++|....+. .+..++..+ ..|.|+|++|+|||+||+++++.....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34566544443 344455332 357889999999999999999885443
No 240
>PRK06696 uridine kinase; Validated
Probab=96.76 E-value=0.0018 Score=63.24 Aligned_cols=46 Identities=33% Similarity=0.406 Sum_probs=36.4
Q ss_pred ehhhHHHHHhhhcC-CCCcceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 164 VESIIKEIESQLLS-GSTEFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 164 r~~~~~~l~~~L~~-~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
|++.+++|.+.+.. ......+|+|.|.+|+||||||+.++..+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 56677777777653 33457899999999999999999999887543
No 241
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.73 E-value=0.0039 Score=60.43 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=29.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
-.++|.|..|.|||||+..+.......|+.+.++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 36789999999999999999999999997666554
No 242
>PHA00729 NTP-binding motif containing protein
Probab=96.71 E-value=0.0043 Score=59.44 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...|.|.|.+|+||||||..+++++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44789999999999999999999864
No 243
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.67 E-value=0.0061 Score=69.63 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=39.0
Q ss_pred CCceeehhhHHHHHhhhcCC-------CCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 159 DQLVGVESIIKEIESQLLSG-------STEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..++|.++.++.|...+... ......+.++|++|+|||++|+.++....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999988877521 12245788999999999999999988763
No 244
>PRK08118 topology modulation protein; Reviewed
Probab=96.64 E-value=0.0016 Score=60.15 Aligned_cols=32 Identities=25% Similarity=0.563 Sum_probs=26.0
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhc---cCCccee
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISS---HFEGSYF 215 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~---~f~~~~~ 215 (664)
.|.|+|++|+||||||+.+++...- +|+...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5889999999999999999998543 4565554
No 245
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.62 E-value=0.0093 Score=54.63 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=25.6
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
++.|+|.+|+|||+++..++.....+-..++|+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~ 33 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYV 33 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 368999999999999999988865543444454
No 246
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.61 E-value=0.00062 Score=65.30 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=102.3
Q ss_pred cCcccEEEcCCCCCCcccccccc-------cccccccccccc----cccc-------cccCCCCCCcEEeecCCCCCCcc
Q 006018 488 LDSLKELYLGGCSNLKRFPEISC-------NIEDLDLKETAI----EELP-------SSIGNLSRLVDLDLTNCSGLKSV 549 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~-------~L~~L~l~~~~i----~~lp-------~~~~~l~~L~~L~l~~~~~l~~l 549 (664)
+..+..++||||.+...-...++ +|+..+++.-.. .+++ +.+-+|++|+..+|+.|......
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 66788999999976544333222 455555544111 1333 34568999999999998877666
Q ss_pred ccc----cCCCCCCCEEeeeCCCCCCcccc--------------ccCCCCCCCEEEccCCCCccccc-----cccCCCCC
Q 006018 550 SSR----LCNLKSLRRLNLSGCLKLEKLPE--------------EIGNLESLEYLNLAEKDFEKIPS-----SMKQLSKL 606 (664)
Q Consensus 550 p~~----~~~l~~L~~L~L~~~~~~~~~p~--------------~l~~l~~L~~L~l~~n~i~~lp~-----~i~~L~~L 606 (664)
|+. +.+-..|.+|.|++|. ++.+.. ...+-+.|++.....|++..-|. .+..-.+|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 643 5567889999999987 443221 12345689999999998886554 23333578
Q ss_pred CEEeecCCCCCCcCCCCCCC-CEEeeeCCCCCccccCCCcccc
Q 006018 607 SDLRLQNCKRLQSLPELPCG-SSIHARHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 607 ~~L~L~~~~~l~~lp~l~~~-~~l~~~~~~~L~~L~ls~N~l~ 648 (664)
+.+.+..|.+- |..... -.+.+..|.+|+.||+..|.+|
T Consensus 188 k~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 188 KEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred eeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence 88888887542 221000 1123567899999999999886
No 247
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.61 E-value=0.0036 Score=58.82 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=40.5
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...++||-++.++.+.-...+ .+.+-+.|.||+|+||||-+..+++..-
T Consensus 25 ~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 556899999999988766643 3567888999999999999999998843
No 248
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.59 E-value=0.0097 Score=58.15 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=36.4
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
.|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455555444455679999999999999999999988766556667765
No 249
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0023 Score=56.84 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=27.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhcc-CCcceee
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSH-FEGSYFM 216 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 216 (664)
--|+|.|++|+||||+++.+++..+.. |...=|+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~ 40 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFI 40 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEE
Confidence 468999999999999999999987765 6654443
No 250
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.0034 Score=61.17 Aligned_cols=156 Identities=20% Similarity=0.211 Sum_probs=98.8
Q ss_pred CcCcccEEEcCCCCCCcc---ccccccccccccccccccc--ccccccCCCCCCcEEeecCCCCCC---------ccccc
Q 006018 487 NLDSLKELYLGGCSNLKR---FPEISCNIEDLDLKETAIE--ELPSSIGNLSRLVDLDLTNCSGLK---------SVSSR 552 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~---~p~~~~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~---------~lp~~ 552 (664)
+++.|++|+++.|..... .|--..+|+.|-|.++.+. .+.+.+..++.++.|.++.|+.-. .+...
T Consensus 95 ~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~ 174 (418)
T KOG2982|consen 95 QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTE 174 (418)
T ss_pred cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchh
Confidence 377899999999876444 4433348888888887764 555667778888888888763211 11100
Q ss_pred ---c-----------------CCCCCCCEEeeeCCCCC-CccccccCCCCCCCEEEccCCCCcccc--ccccCCCCCCEE
Q 006018 553 ---L-----------------CNLKSLRRLNLSGCLKL-EKLPEEIGNLESLEYLNLAEKDFEKIP--SSMKQLSKLSDL 609 (664)
Q Consensus 553 ---~-----------------~~l~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~l~~n~i~~lp--~~i~~L~~L~~L 609 (664)
+ .-++++..+.+..|.+- .........++.+..|+|+.|+|.... ..+..++.|..|
T Consensus 175 v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dl 254 (418)
T KOG2982|consen 175 VLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDL 254 (418)
T ss_pred hhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhhee
Confidence 0 01355555555555321 112233455667778888888887553 357788899999
Q ss_pred eecCCCCCCcCCCCCCCCEEeeeCCCCCccccCC
Q 006018 610 RLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNS 643 (664)
Q Consensus 610 ~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls 643 (664)
+++++++...+.. -....+.++.+++++.|+=+
T Consensus 255 Rv~~~Pl~d~l~~-~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 255 RVSENPLSDPLRG-GERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred eccCCcccccccC-CcceEEEEeeccceEEecCc
Confidence 9999887766543 11145567888888888754
No 251
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.016 Score=55.16 Aligned_cols=153 Identities=20% Similarity=0.231 Sum_probs=77.1
Q ss_pred CCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc
Q 006018 159 DQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG 227 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 227 (664)
.++=|.|-..+++.+.... +-+..+-|.++|++|.|||.||++++++....|-.++= .+...+..
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvg----sefvqkyl 230 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVG----SEFVQKYL 230 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeecc----HHHHHHHh
Confidence 3455666666666554421 11335678899999999999999999987665533221 11111111
Q ss_pred ch-hHHhHHHHHHHhcCceEEEEEecCCCHHH----------------HHHHhccCCCCCC--CcEEEEEeCCHHHHH--
Q 006018 228 GL-ANIHLNFERRRLSRMKVLIVFYDLTDLKQ----------------IDLLIGRLDGFVP--GSRVIITTRDVQLLK-- 286 (664)
Q Consensus 228 ~l-~~~~l~~~~~~L~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~~~~--gs~IliTtR~~~~~~-- 286 (664)
+- ..+-.+..+-.-.+.+.+|.+|.++.... +-+++.....+.+ ..+||+.|-..+.+.
T Consensus 231 gegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpa 310 (408)
T KOG0727|consen 231 GEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPA 310 (408)
T ss_pred ccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHh
Confidence 00 01111122222245688999999865321 2233444444433 457777554222111
Q ss_pred hhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 287 NHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 287 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
.......+..++.+--+..+-.-.|....
T Consensus 311 llrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 311 LLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred hcCCccccccccCCCCchhhhhhhHHhhh
Confidence 11111244556666444444444454443
No 252
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.56 E-value=0.021 Score=54.29 Aligned_cols=101 Identities=19% Similarity=0.249 Sum_probs=65.3
Q ss_pred CCCCceeehhhHHHHHhhhc--CCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhH
Q 006018 157 NKDQLVGVESIIKEIESQLL--SGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHL 234 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~--~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l 234 (664)
.-..++|.|...+.|.+--. .......-|.+||.-|+|||.|++++.+.+.+..-. .++.-++... .+
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr--LVEV~k~dl~--------~L 127 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR--LVEVDKEDLA--------TL 127 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe--EEEEcHHHHh--------hH
Confidence 55678999988887754221 122335578999999999999999999998776544 2221111111 23
Q ss_pred HHHHHHhc--CceEEEEEecCC---CHHHHHHHhccCC
Q 006018 235 NFERRRLS--RMKVLIVFYDLT---DLKQIDLLIGRLD 267 (664)
Q Consensus 235 ~~~~~~L~--~~~~LlVlDdv~---~~~~~~~l~~~~~ 267 (664)
..+.+.|+ .+|++|..||.. ..+.+..+...+.
T Consensus 128 p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le 165 (287)
T COG2607 128 PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE 165 (287)
T ss_pred HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc
Confidence 34455554 468999999982 3445666666654
No 253
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.55 E-value=0.077 Score=55.42 Aligned_cols=191 Identities=19% Similarity=0.156 Sum_probs=108.9
Q ss_pred ehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHH-HHHHHHh---------------------------hccCCccee
Q 006018 164 VESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIA-SAIYSNI---------------------------SSHFEGSYF 215 (664)
Q Consensus 164 r~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA-~~~~~~~---------------------------~~~f~~~~~ 215 (664)
|.+.+++|..||....+ ..|.|.|+-|.||+.|+ .++.++. -+.|+.--|
T Consensus 1 R~e~~~~L~~wL~e~~~--TFIvV~GPrGSGK~elV~d~~L~~r~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~PvFsw 78 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN--TFIVVQGPRGSGKRELVMDHVLKDRKNVLVIDCDQIVKARGDAAFIKNLASQVGYFPVFSW 78 (431)
T ss_pred CchHHHHHHHHHhcCCC--eEEEEECCCCCCccHHHHHHHHhCCCCEEEEEChHhhhccChHHHHHHHHHhcCCCcchHH
Confidence 56778999999976544 58999999999999999 5554431 122444444
Q ss_pred eccchhhhhc--------ccchhH---HhHH--------HHHH-------------------Hhc---CceEEEEEecCC
Q 006018 216 MQNIRDESEK--------VGGLAN---IHLN--------FERR-------------------RLS---RMKVLIVFYDLT 254 (664)
Q Consensus 216 ~~~~~~~~~~--------~~~l~~---~~l~--------~~~~-------------------~L~---~~~~LlVlDdv~ 254 (664)
+..+.....- ..++.+ .++. .+++ +|. ..+-+||+||+.
T Consensus 79 ~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVIdnF~ 158 (431)
T PF10443_consen 79 MNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVIDNFL 158 (431)
T ss_pred HHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEcchh
Confidence 4333322110 001111 0111 1111 111 125689999974
Q ss_pred CHH-----HHHH---HhccCCCCCCCcEEEEEeCCHHHHHhhc---CCccccEEEecCCCHHHHHHHHHHhhhCCCCC--
Q 006018 255 DLK-----QIDL---LIGRLDGFVPGSRVIITTRDVQLLKNHR---GSRVGHVFEVKELSYNDSLTLFSRNAFGQNHP-- 321 (664)
Q Consensus 255 ~~~-----~~~~---l~~~~~~~~~gs~IliTtR~~~~~~~~~---~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-- 321 (664)
... -|+. +...+-. .+=.+||++|-+........ ...+...+.+...+.+.|.++...+.-.....
T Consensus 159 ~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~~~~~ 237 (431)
T PF10443_consen 159 HKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDTEDSS 237 (431)
T ss_pred ccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccccccc
Confidence 311 1122 2222211 23348888887754433221 12256778999999999999998876332110
Q ss_pred -----------C-----ccHHHHHHHHHHHhcCCchhHHHHhhhcC-CCCHHH
Q 006018 322 -----------A-----AGFLELSNIVIKYANGVPLALQVLGSYLK-GMSEEE 357 (664)
Q Consensus 322 -----------~-----~~~~~~~~~i~~~~~glPLal~~~a~~l~-~~~~~~ 357 (664)
. ..........+..+||-=.-|..+++.++ |.++++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~ 290 (431)
T PF10443_consen 238 DSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEE 290 (431)
T ss_pred cccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHH
Confidence 0 12334456677888998888998888885 555543
No 254
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.49 E-value=0.0078 Score=54.32 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=29.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
.+|-|.|.+|.||||||+++.++....-..+.++.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 57899999999999999999999888776677764
No 255
>PRK07667 uridine kinase; Provisional
Probab=96.47 E-value=0.0052 Score=58.40 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=31.8
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
++++.+.+........+|+|.|.+|.||||+|+.+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34555555544455689999999999999999999988654
No 256
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.077 Score=52.01 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=58.9
Q ss_pred CCCCCCCceeehhhHHHHHhhhcC----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhh
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLS----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDES 223 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 223 (664)
|...=.++-|.+...+.|++.... ....-+-|.++|++|.||+.||++|+.....-| |-....+..
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF----FSvSSSDLv 203 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF----FSVSSSDLV 203 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce----EEeehHHHH
Confidence 443445678888888888775432 112356789999999999999999998754333 221122222
Q ss_pred hcccchhHHhHHHHHHHh-cCceEEEEEecCCC
Q 006018 224 EKVGGLANIHLNFERRRL-SRMKVLIVFYDLTD 255 (664)
Q Consensus 224 ~~~~~l~~~~l~~~~~~L-~~~~~LlVlDdv~~ 255 (664)
.+.-+-.+..+..+.+.- .+++-+|.+|.++.
T Consensus 204 SKWmGESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 204 SKWMGESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 221122222223333322 46889999999864
No 257
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.45 E-value=0.053 Score=56.62 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=92.9
Q ss_pred CCCCceeehhhHHHHHhhhcC--CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCc--ceeeccc--hh---hhhccc
Q 006018 157 NKDQLVGVESIIKEIESQLLS--GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEG--SYFMQNI--RD---ESEKVG 227 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~--~~---~~~~~~ 227 (664)
....++||+.++..+..++.. +.+..+.+-|.|-+|.|||.+...++.+....... ++++... .+ .+.+..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHH
Confidence 456899999999999998853 34556788899999999999999999986654443 2333211 11 111100
Q ss_pred ----------chhHHhHHHHHHHhcCc--eEEEEEecCCCHHH--HHHHhcc--CCCCCCCcEEEEEeCCHHH------H
Q 006018 228 ----------GLANIHLNFERRRLSRM--KVLIVFYDLTDLKQ--IDLLIGR--LDGFVPGSRVIITTRDVQL------L 285 (664)
Q Consensus 228 ----------~l~~~~l~~~~~~L~~~--~~LlVlDdv~~~~~--~~~l~~~--~~~~~~gs~IliTtR~~~~------~ 285 (664)
+...+.+..+.+...+. -+|+|+|..+.... -+.+... +++ -+++|+|+.---..+ +
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~-lp~sr~iLiGiANslDlTdR~L 306 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK-LPNSRIILIGIANSLDLTDRFL 306 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc-CCcceeeeeeehhhhhHHHHHh
Confidence 11111244555555443 58999999875432 1112122 222 356666554321111 1
Q ss_pred HhhcC--CccccEEEecCCCHHHHHHHHHHhh
Q 006018 286 KNHRG--SRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 286 ~~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
-.... .-....+.-++-+.++-.+.|..+.
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 11110 0134567888999999999998886
No 258
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.12 Score=49.55 Aligned_cols=217 Identities=20% Similarity=0.202 Sum_probs=111.2
Q ss_pred eEEEEEeecCCCccccccCCCCcccccCC------CChhHhHhhhhhccccccccCCCCCCCCCceeehhhHHHHHhhhc
Q 006018 103 IVVPVFYLVDPSDAGYCPSLGWMGIFDIP------TSESVLIEGNVNDISKKLSDLFPSDNKDQLVGVESIIKEIESQLL 176 (664)
Q Consensus 103 ~v~pv~~~v~p~~vr~~~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~vGr~~~~~~l~~~L~ 176 (664)
..+||.--|+|+.++...+.|.+. ++- ..|... .+...--...|...-+++=|.+..++++.+.+-
T Consensus 117 ~fLPvvGLvd~~~LkPgDLVgvnK--DsyliletLP~eyDs------rVkaMevDekPtE~YsDiGGldkQIqELvEAiV 188 (424)
T KOG0652|consen 117 YFLPVVGLVDPDKLKPGDLVGVNK--DSYLILETLPSEYDS------RVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIV 188 (424)
T ss_pred eeeeeecccChhhCCCcceeeecC--CceeehhcCChhhhh------hcceeeeccCCcccccccccHHHHHHHHHHHhc
Confidence 478888888999888766666521 110 111111 000000112344355677899999999887764
Q ss_pred CC-----------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc-chhHHhHHHHHHHhcCc
Q 006018 177 SG-----------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG-GLANIHLNFERRRLSRM 244 (664)
Q Consensus 177 ~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~L~~~ 244 (664)
.. -...+-|..+|++|.|||-+|++.+.+...-|---+== .+-+.+-..+ .+- .+.+.-.-...
T Consensus 189 Lpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgP-QLVQMfIGdGAkLV---RDAFaLAKEka 264 (424)
T KOG0652|consen 189 LPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGP-QLVQMFIGDGAKLV---RDAFALAKEKA 264 (424)
T ss_pred cccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcch-HHHhhhhcchHHHH---HHHHHHhhccC
Confidence 22 12345688999999999999999887754433100000 0000000000 000 01111112345
Q ss_pred eEEEEEecCCCHH----------------HHHHHhccCCCCCCC--cEEEEEeCCHHHHH--hhcCCccccEEEecCCCH
Q 006018 245 KVLIVFYDLTDLK----------------QIDLLIGRLDGFVPG--SRVIITTRDVQLLK--NHRGSRVGHVFEVKELSY 304 (664)
Q Consensus 245 ~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~g--s~IliTtR~~~~~~--~~~~~~~~~~~~l~~L~~ 304 (664)
+.+|.+|.++... ..-+++..+..+.+. .+||..|-.-+++. .+.+...+..++.+.-+.
T Consensus 265 P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne 344 (424)
T KOG0652|consen 265 PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 344 (424)
T ss_pred CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCCCh
Confidence 8899999875321 112344555555544 45666554333321 112222556677766565
Q ss_pred HHHHHHHHHhhhCC-CCCCccHHHHHHH
Q 006018 305 NDSLTLFSRNAFGQ-NHPAAGFLELSNI 331 (664)
Q Consensus 305 ~ea~~Lf~~~a~~~-~~~~~~~~~~~~~ 331 (664)
+.-.+++.-|.-+- ..+.-+++++++.
T Consensus 345 ~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 345 EARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred HHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 55556666555322 2345567776654
No 259
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.39 E-value=0.012 Score=59.24 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.8
Q ss_pred CcceEEEEecCCCCChHHHHHHHH
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIY 203 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~ 203 (664)
+++..|.+.|.+|.|||.||.+..
T Consensus 243 ~dI~lV~L~G~AGtGKTlLALaAg 266 (436)
T COG1875 243 DDIDLVSLGGKAGTGKTLLALAAG 266 (436)
T ss_pred CCCCeEEeeccCCccHhHHHHHHH
Confidence 468899999999999999987654
No 260
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.0023 Score=61.49 Aligned_cols=61 Identities=28% Similarity=0.404 Sum_probs=27.5
Q ss_pred CCCCCCEEeeeCC--CCCCccccccCCCCCCCEEEccCCCCcccc--ccccCCCCCCEEeecCCC
Q 006018 555 NLKSLRRLNLSGC--LKLEKLPEEIGNLESLEYLNLAEKDFEKIP--SSMKQLSKLSDLRLQNCK 615 (664)
Q Consensus 555 ~l~~L~~L~L~~~--~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp--~~i~~L~~L~~L~L~~~~ 615 (664)
.|++|+.|.++.| .....++.....+++|++|++++|+++-+- ..+..+.+|..|++.+|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 4455555555555 333333333344455555555555544210 123344445555555544
No 261
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.38 E-value=0.022 Score=51.23 Aligned_cols=102 Identities=22% Similarity=0.229 Sum_probs=57.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh--HHHHHHHhcCceEEEEEecCC---CH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH--LNFERRRLSRMKVLIVFYDLT---DL 256 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~--l~~~~~~L~~~~~LlVlDdv~---~~ 256 (664)
-.+++|.|..|.|||||++.++.... ...+.+++.......- ...+..-+ .-.+...+..++-++++|+.. +.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~-~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGY-FEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEE-EccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 35899999999999999999876532 2234444432110000 00022112 223455666778889999863 33
Q ss_pred HHHHHHhccCCCCCCCcEEEEEeCCHHHHHh
Q 006018 257 KQIDLLIGRLDGFVPGSRVIITTRDVQLLKN 287 (664)
Q Consensus 257 ~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~ 287 (664)
...+.+...+... +..||++|.+.+....
T Consensus 104 ~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 104 ESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred HHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 3333333333222 2478888887766544
No 262
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.04 Score=60.28 Aligned_cols=151 Identities=20% Similarity=0.260 Sum_probs=88.1
Q ss_pred CCCCceeehhhHHHHHhhh---cCCC-------CcceEEEEecCCCCChHHHHHHHHHHhhccC---Ccceeeccchhhh
Q 006018 157 NKDQLVGVESIIKEIESQL---LSGS-------TEFNTVGIWGIGGIGKTTIASAIYSNISSHF---EGSYFMQNIRDES 223 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L---~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f---~~~~~~~~~~~~~ 223 (664)
...+.-|.|+..+++.+.+ .... .-.+-|.++|++|.|||.||++++-...-.| .+..|++
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe------ 221 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE------ 221 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh------
Confidence 4466788887776665544 3222 2255689999999999999999998743322 1122221
Q ss_pred hcccchhHHhH-HHHHHHhcCceEEEEEecCCCHH----------------HHHHHhccCCCCCCCc--EEEE-EeCCHH
Q 006018 224 EKVGGLANIHL-NFERRRLSRMKVLIVFYDLTDLK----------------QIDLLIGRLDGFVPGS--RVII-TTRDVQ 283 (664)
Q Consensus 224 ~~~~~l~~~~l-~~~~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~gs--~Ili-TtR~~~ 283 (664)
...+...... +...+..++-++++++|.++... .+.+++...+.++.+. .|+. |.| ++
T Consensus 222 -mfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNR-pd 299 (596)
T COG0465 222 -MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNR-PD 299 (596)
T ss_pred -hhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCC-cc
Confidence 1111111111 23445556678999999876421 3556666666666332 2332 445 33
Q ss_pred HH--HhhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 284 LL--KNHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 284 ~~--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
+. ........+..+.++..+...-.+.++-|+
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 32 112222367778888888788888887666
No 263
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.00052 Score=66.67 Aligned_cols=83 Identities=23% Similarity=0.344 Sum_probs=53.6
Q ss_pred cccccccccccccc---cccccCCCCCCcEEeecCCCCCCcccccc-CCCCCCCEEeeeCCCCCC-ccccccCCCCCCCE
Q 006018 511 NIEDLDLKETAIEE---LPSSIGNLSRLVDLDLTNCSGLKSVSSRL-CNLKSLRRLNLSGCLKLE-KLPEEIGNLESLEY 585 (664)
Q Consensus 511 ~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~ 585 (664)
.++.|||.+|.|.. +-.-+.+|+.|++|+++.|.....+. ++ .-+.+|++|-|.|..... .....+..++.++.
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 67888888888764 33445688888888888655433322 22 345678888887765322 22344566777777
Q ss_pred EEccCCCCc
Q 006018 586 LNLAEKDFE 594 (664)
Q Consensus 586 L~l~~n~i~ 594 (664)
|+++.|++.
T Consensus 151 lHmS~N~~r 159 (418)
T KOG2982|consen 151 LHMSDNSLR 159 (418)
T ss_pred hhhccchhh
Confidence 877777554
No 264
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.32 E-value=0.11 Score=53.62 Aligned_cols=48 Identities=31% Similarity=0.252 Sum_probs=38.5
Q ss_pred CCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH
Q 006018 158 KDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
...++|+...+.++.+.+..-......|.|+|..|+||+++|+.+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 356899999999888777544444557899999999999999988754
No 265
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.32 E-value=0.01 Score=53.25 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.0
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999987643
No 266
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.015 Score=57.20 Aligned_cols=116 Identities=18% Similarity=0.271 Sum_probs=60.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHhcCceEEEEEecCCCHH----
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRLSRMKVLIVFYDLTDLK---- 257 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~~---- 257 (664)
...++|||++|.|||-+|+.|+..+.-.|-..+--.-+.......+.+.. +..+..-...++.|.+|+++...
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIR---emf~yA~~~~pciifmdeiDAigGRr~ 242 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIR---DMFRYAREVIPCIIFMDEIDAIGGRRF 242 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHH---HHHHHHhhhCceEEeehhhhhhccEEe
Confidence 56799999999999999999999876555222111100000000001111 11122223357999999986421
Q ss_pred ------------HHHHHhccCCCC--CCCcEEEEEeCCHHHHHhh--cCCccccEEEec
Q 006018 258 ------------QIDLLIGRLDGF--VPGSRVIITTRDVQLLKNH--RGSRVGHVFEVK 300 (664)
Q Consensus 258 ------------~~~~l~~~~~~~--~~gs~IliTtR~~~~~~~~--~~~~~~~~~~l~ 300 (664)
.+-.++..+..+ ....++|+||-..+.+... .....+..|+++
T Consensus 243 se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iP 301 (388)
T KOG0651|consen 243 SEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIP 301 (388)
T ss_pred ccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccC
Confidence 122333333222 2456889999877654322 111234456655
No 267
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.29 E-value=0.022 Score=54.30 Aligned_cols=100 Identities=19% Similarity=0.176 Sum_probs=60.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcc-eeeccchhhhhccc-ch--h------HHh-HHHHHHHhcCceEEEEEe
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGS-YFMQNIRDESEKVG-GL--A------NIH-LNFERRRLSRMKVLIVFY 251 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~-~~~~~~~~~~~~~~-~l--~------~~~-l~~~~~~L~~~~~LlVlD 251 (664)
.+|.|.|+.|.||||++..++..+....... +.+++-.+...... .. + ... .+.++..++..+=++++|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g 81 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG 81 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence 4789999999999999999888766544433 33332212111000 00 0 011 235666777778899999
Q ss_pred cCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHH
Q 006018 252 DLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLL 285 (664)
Q Consensus 252 dv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~ 285 (664)
++.+.+.+....... ..|..++.|+-..+..
T Consensus 82 Eird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 82 EMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred CCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 998887766554432 2455677777655443
No 268
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.29 E-value=0.031 Score=53.31 Aligned_cols=104 Identities=18% Similarity=0.172 Sum_probs=54.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh----cc--------CCc-ceee-ccchhhhhcccchhHHhHHHHHHHhcC----c
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS----SH--------FEG-SYFM-QNIRDESEKVGGLANIHLNFERRRLSR----M 244 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~----~~--------f~~-~~~~-~~~~~~~~~~~~l~~~~l~~~~~~L~~----~ 244 (664)
++++|.|+.|.|||||.+.+.-.+. .. |+. ..|. ..+.+...........+...+.+.+.. +
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 6899999999999999998875431 11 100 0010 011111111001111122333333332 7
Q ss_pred eEEEEEecCC---CHHHH----HHHhccCCCCCCCcEEEEEeCCHHHHHhh
Q 006018 245 KVLIVFYDLT---DLKQI----DLLIGRLDGFVPGSRVIITTRDVQLLKNH 288 (664)
Q Consensus 245 ~~LlVlDdv~---~~~~~----~~l~~~~~~~~~gs~IliTtR~~~~~~~~ 288 (664)
+-++++|+.. +.... ..+...+. ..|..+|++|.+.+.+...
T Consensus 106 p~llllDEp~~glD~~~~~~l~~~ll~~l~--~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 106 PVLFLLDEIFKGTNSRERQAASAAVLKFLK--NKNTIGIISTHDLELADLL 154 (199)
T ss_pred CeEEEEecccCCCCHHHHHHHHHHHHHHHH--HCCCEEEEEcCcHHHHHhh
Confidence 8899999962 22211 22223332 2367899999988877655
No 269
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.27 E-value=0.0035 Score=54.97 Aligned_cols=22 Identities=50% Similarity=0.748 Sum_probs=20.5
Q ss_pred EEEecCCCCChHHHHHHHHHHh
Q 006018 185 VGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
|+|.|.+|+||||+|+++.++.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 270
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.24 E-value=0.076 Score=53.04 Aligned_cols=187 Identities=15% Similarity=0.109 Sum_probs=93.3
Q ss_pred CCCCceeehh---hHHHHHhhhcCCC-CcceEEEEecCCCCChHHHHHHHHHHhhccCCc------ceeec-----cchh
Q 006018 157 NKDQLVGVES---IIKEIESQLLSGS-TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEG------SYFMQ-----NIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~---~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~------~~~~~-----~~~~ 221 (664)
..+.+||-.. .++.|.+++.... ...+.+.|+|.+|+|||++++++.+..-..++. ++.++ +.+.
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 3455677654 4556677776543 335679999999999999999999875444432 22222 1111
Q ss_pred hhhcc-----------cchhHHhHHHHHHHhcC-ceEEEEEecCCCHH-----HHHHHhccCCCCCC---CcEEEEEeCC
Q 006018 222 ESEKV-----------GGLANIHLNFERRRLSR-MKVLIVFYDLTDLK-----QIDLLIGRLDGFVP---GSRVIITTRD 281 (664)
Q Consensus 222 ~~~~~-----------~~l~~~~l~~~~~~L~~-~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~---gs~IliTtR~ 281 (664)
.+... ...... .....+.++. +--+||+|++.+.- +-..++..++..++ =+-|.+.|++
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~-~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKL-EQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHH-HHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 11100 011110 1122334443 34588999996631 22222222222222 2355666664
Q ss_pred HHHHHhhcCC--ccccEEEecCCCHHH-HHHHHHHhhh--C-CCCCCccHHHHHHHHHHHhcCCchhHH
Q 006018 282 VQLLKNHRGS--RVGHVFEVKELSYND-SLTLFSRNAF--G-QNHPAAGFLELSNIVIKYANGVPLALQ 344 (664)
Q Consensus 282 ~~~~~~~~~~--~~~~~~~l~~L~~~e-a~~Lf~~~a~--~-~~~~~~~~~~~~~~i~~~~~glPLal~ 344 (664)
.--+-..+.+ +-...+.++..+.++ ...|+..... . .....-...++++.|...++|+.=-+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 3222111100 012345566655443 4444432211 1 111223456889999999999874443
No 271
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.0087 Score=65.24 Aligned_cols=150 Identities=22% Similarity=0.232 Sum_probs=84.6
Q ss_pred CCceeehhhHHHHHhhhcC----CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccch---hH
Q 006018 159 DQLVGVESIIKEIESQLLS----GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGL---AN 231 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l---~~ 231 (664)
.+-.|+++-.++|.+.+.- ++..-++++.+|++|||||.+|+.++......|-.. -+-.+.+.....+.- -.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf-SvGG~tDvAeIkGHRRTYVG 489 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRF-SVGGMTDVAEIKGHRRTYVG 489 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEE-eccccccHHhhcccceeeec
Confidence 4578999999998887753 334578999999999999999999999876655221 111111111111100 00
Q ss_pred HhHHHHHHHh---cCceEEEEEecCCCHHH------HHHHhccCCCC-------------CCCcEEEE-EeCC------H
Q 006018 232 IHLNFERRRL---SRMKVLIVFYDLTDLKQ------IDLLIGRLDGF-------------VPGSRVII-TTRD------V 282 (664)
Q Consensus 232 ~~l~~~~~~L---~~~~~LlVlDdv~~~~~------~~~l~~~~~~~-------------~~gs~Ili-TtR~------~ 282 (664)
.--..+-+.| +...-|+.+|.|+.... ..+++..++.- --=|+|++ .|-| +
T Consensus 490 AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~ 569 (906)
T KOG2004|consen 490 AMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPP 569 (906)
T ss_pred cCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCCh
Confidence 0011233333 33466888999875321 12222222110 11256654 3332 1
Q ss_pred HHHHhhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 283 QLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 283 ~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
.+.. ...++++.+-..+|-...-.++.
T Consensus 570 pLlD------RMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 570 PLLD------RMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hhhh------hhheeeccCccHHHHHHHHHHhh
Confidence 2222 34589999999999777766664
No 272
>PRK04132 replication factor C small subunit; Provisional
Probab=96.24 E-value=0.039 Score=63.40 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=87.9
Q ss_pred Eec--CCCCChHHHHHHHHHHhhc-cCCcceeeccchhhhhcccchhHHhHHHHHH--HhcC-ceEEEEEecCCCH--HH
Q 006018 187 IWG--IGGIGKTTIASAIYSNISS-HFEGSYFMQNIRDESEKVGGLANIHLNFERR--RLSR-MKVLIVFYDLTDL--KQ 258 (664)
Q Consensus 187 I~G--~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~--~L~~-~~~LlVlDdv~~~--~~ 258 (664)
+.| +.++||||+|.++++++-. .+...+.--+..+.. ....+++. ++.... .+.+ +.-++|+|+++.. ++
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r-gid~IR~i-Ik~~a~~~~~~~~~~KVvIIDEaD~Lt~~A 646 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER-GINVIREK-VKEFARTKPIGGASFKIIFLDEADALTQDA 646 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc-cHHHHHHH-HHHHHhcCCcCCCCCEEEEEECcccCCHHH
Confidence 347 6799999999999998532 232221111111100 00001100 111111 1111 3479999999865 46
Q ss_pred HHHHhccCCCCCCCcEEEEEeCCHHH-HHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhc
Q 006018 259 IDLLIGRLDGFVPGSRVIITTRDVQL-LKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYAN 337 (664)
Q Consensus 259 ~~~l~~~~~~~~~gs~IliTtR~~~~-~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~ 337 (664)
.+.|...+......+++|++|.+..- ..... +.+..+.+.+++.++-.+.+.+.+-.... .-..+....|++.++
T Consensus 647 QnALLk~lEep~~~~~FILi~N~~~kIi~tIr--SRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~i~~e~L~~Ia~~s~ 722 (846)
T PRK04132 647 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ--SRCAIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAE 722 (846)
T ss_pred HHHHHHHhhCCCCCeEEEEEeCChhhCchHHh--hhceEEeCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcC
Confidence 77777777665667777777665433 22222 24678999999999998888776532221 112456788999999
Q ss_pred CCchhHH
Q 006018 338 GVPLALQ 344 (664)
Q Consensus 338 glPLal~ 344 (664)
|.+....
T Consensus 723 GDlR~AI 729 (846)
T PRK04132 723 GDMRRAI 729 (846)
T ss_pred CCHHHHH
Confidence 9875443
No 273
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.22 E-value=0.011 Score=58.90 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=35.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc--chh-HH----hH-HHHHHHhcCceEEEEEecCC
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG--GLA-NI----HL-NFERRRLSRMKVLIVFYDLT 254 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~--~l~-~~----~l-~~~~~~L~~~~~LlVlDdv~ 254 (664)
+.|.|+|.||.||||+|+++...+...=..+.++.+-.-...... .-. +. .+ ..+.+.+ ++..++|+||..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd~n 80 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILDDNN 80 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S--
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeCCc
Confidence 468999999999999999999886653222333321111111111 111 11 12 2334444 456888999987
Q ss_pred CHHH
Q 006018 255 DLKQ 258 (664)
Q Consensus 255 ~~~~ 258 (664)
....
T Consensus 81 YiKg 84 (270)
T PF08433_consen 81 YIKG 84 (270)
T ss_dssp -SHH
T ss_pred hHHH
Confidence 6543
No 274
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.21 E-value=0.084 Score=58.82 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=40.8
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
....++|....++++.+.+..-......|.|+|..|+|||++|+.+.+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 45689999999999888775443444568899999999999999998763
No 275
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.019 Score=63.13 Aligned_cols=100 Identities=22% Similarity=0.257 Sum_probs=61.3
Q ss_pred CCCCCCCCCceeehhhHHHHHhhhcC----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchh
Q 006018 152 LFPSDNKDQLVGVESIIKEIESQLLS----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRD 221 (664)
Q Consensus 152 ~~p~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~ 221 (664)
..|...=+++=|.++...+|.+-+.. +-....=|.++|++|.|||-||++|+-..+-.| +-..--+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F----lSVKGPE 740 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF----LSVKGPE 740 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE----EeecCHH
Confidence 45663335566777777777766543 112244688999999999999999998754433 1111112
Q ss_pred hhhcccchhHHhHHHHHHHh-cCceEEEEEecCCC
Q 006018 222 ESEKVGGLANIHLNFERRRL-SRMKVLIVFYDLTD 255 (664)
Q Consensus 222 ~~~~~~~l~~~~l~~~~~~L-~~~~~LlVlDdv~~ 255 (664)
......+-.++.++.+.++- ...+|+|.+|.+++
T Consensus 741 LLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred HHHHHhcchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 22222233333454444444 44799999999876
No 276
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.18 E-value=0.005 Score=66.48 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=40.8
Q ss_pred CCceeehhhHHHHHhhh----cCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 159 DQLVGVESIIKEIESQL----LSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L----~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.+++|.++.+++|.+.| ..-....+++.++|++|+|||+||+.+++-...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 36899999999998887 222345679999999999999999999886443
No 277
>PRK06762 hypothetical protein; Provisional
Probab=96.18 E-value=0.0089 Score=55.26 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=22.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+|.|.|++|+||||+|+.+++..
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 588999999999999999999886
No 278
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.18 E-value=0.021 Score=53.18 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=60.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccc--hhhhhcccchhHH--hHHHHHHHhcCceEEEEEecCC---
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNI--RDESEKVGGLANI--HLNFERRRLSRMKVLIVFYDLT--- 254 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~~~~~l~~~--~l~~~~~~L~~~~~LlVlDdv~--- 254 (664)
-.+++|.|..|.|||||++.++.-... ..+.+.+... .-.... ..+..- ..-.+...+..++-++++|+--
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~-~~LSgGq~qrv~laral~~~p~lllLDEPts~L 102 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQY-IDLSGGELQRVAIAAALLRNATFYLFDEPSAYL 102 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEccc-CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 358999999999999999988765322 2333333211 000000 002111 2224455666778899999863
Q ss_pred CHHHHHHHhccCCCC-CC-CcEEEEEeCCHHHHHhhcCCccccEEEec
Q 006018 255 DLKQIDLLIGRLDGF-VP-GSRVIITTRDVQLLKNHRGSRVGHVFEVK 300 (664)
Q Consensus 255 ~~~~~~~l~~~~~~~-~~-gs~IliTtR~~~~~~~~~~~~~~~~~~l~ 300 (664)
+....+.+...+... .. +..||++|.+........ +.++.+.
T Consensus 103 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~----d~i~~l~ 146 (177)
T cd03222 103 DIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS----DRIHVFE 146 (177)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC----CEEEEEc
Confidence 222222222222111 12 357888888877665443 3455554
No 279
>PRK07261 topology modulation protein; Provisional
Probab=96.15 E-value=0.0041 Score=57.77 Aligned_cols=65 Identities=17% Similarity=0.195 Sum_probs=37.9
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhc---cCCcceeeccchhhhhcccchhHHhHHHHHHHhcCceEEEEEecCCCH
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISS---HFEGSYFMQNIRDESEKVGGLANIHLNFERRRLSRMKVLIVFYDLTDL 256 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~---~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~ 256 (664)
.|+|+|++|+||||||+++.....- +.+...|-....+ .-.+.-...+.+.+.+.+ .|+|+.-..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~------~~~~~~~~~~~~~~~~~~--wIidg~~~~ 69 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQE------RDDDDMIADISNFLLKHD--WIIDGNYSW 69 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccccc------CCHHHHHHHHHHHHhCCC--EEEcCcchh
Confidence 4889999999999999999876421 2233333211100 001112345555666666 678887543
No 280
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.14 E-value=0.098 Score=63.92 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.4
Q ss_pred cceEEEEecCCCCChHHHHHHHHHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+-|.++|++|+|||.||+++|..
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 3567889999999999999999987
No 281
>PRK04296 thymidine kinase; Provisional
Probab=96.14 E-value=0.026 Score=53.37 Aligned_cols=98 Identities=16% Similarity=0.047 Sum_probs=56.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeecc---chh----hhhccc-chhH------Hh-HHHHHHHhcCceEE
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQN---IRD----ESEKVG-GLAN------IH-LNFERRRLSRMKVL 247 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~---~~~----~~~~~~-~l~~------~~-l~~~~~~L~~~~~L 247 (664)
.++.|+|..|.||||+|..++.+...+...++++.. .+. .....+ .+.. .+ ++.+.+ ..++.-+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~dv 81 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKIDC 81 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCCE
Confidence 467899999999999999999886555444443321 111 111111 0110 11 223333 2234568
Q ss_pred EEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCHH
Q 006018 248 IVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDVQ 283 (664)
Q Consensus 248 lVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~~ 283 (664)
||+|.+.- .+++..+...+. ..|..|++|.++.+
T Consensus 82 viIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 82 VLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred EEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 99999854 344554544432 45778999999743
No 282
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.13 E-value=0.026 Score=56.37 Aligned_cols=100 Identities=13% Similarity=0.107 Sum_probs=60.4
Q ss_pred eehh-hHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc---chhH---Hh-H
Q 006018 163 GVES-IIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG---GLAN---IH-L 234 (664)
Q Consensus 163 Gr~~-~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~---~l~~---~~-l 234 (664)
|... .++.+..++.. ...+|.|.|..|.||||++..+...+...-..++.+++..+..-... .+.. .. -
T Consensus 63 g~~~~~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~ 139 (264)
T cd01129 63 GLKPENLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFA 139 (264)
T ss_pred CCCHHHHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHH
Confidence 4433 34445555532 23589999999999999999988776442223344443333211100 0111 11 3
Q ss_pred HHHHHHhcCceEEEEEecCCCHHHHHHHhcc
Q 006018 235 NFERRRLSRMKVLIVFYDLTDLKQIDLLIGR 265 (664)
Q Consensus 235 ~~~~~~L~~~~~LlVlDdv~~~~~~~~l~~~ 265 (664)
+.++..|+..+-.++++++.+.+....+...
T Consensus 140 ~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~a 170 (264)
T cd01129 140 RGLRAILRQDPDIIMVGEIRDAETAEIAVQA 170 (264)
T ss_pred HHHHHHhccCCCEEEeccCCCHHHHHHHHHH
Confidence 4667778888999999999998876655443
No 283
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.11 E-value=0.0027 Score=54.62 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=22.1
Q ss_pred EEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 185 VGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
|.|+|.+|+|||++|+.++..+...|..+-+-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~t 33 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFT 33 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEec
Confidence 67999999999999999999988888765443
No 284
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.10 E-value=0.034 Score=55.26 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.4
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
.|.+.|++|+||||+|+++++.....
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999886543
No 285
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.08 E-value=0.016 Score=55.14 Aligned_cols=108 Identities=15% Similarity=0.171 Sum_probs=53.8
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc---ccchhHHhHHHHHHHh----
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK---VGGLANIHLNFERRRL---- 241 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~---~~~l~~~~l~~~~~~L---- 241 (664)
+.+...+.. +.+++.|.|.+|.||||+++.+...+...-..++++.--...... .......-+..+....
T Consensus 8 ~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~ 84 (196)
T PF13604_consen 8 EAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGD 84 (196)
T ss_dssp HHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEE
T ss_pred HHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCccc
Confidence 344444432 336888999999999999999887766643233333211111100 0000000011111000
Q ss_pred ------cCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCC
Q 006018 242 ------SRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRD 281 (664)
Q Consensus 242 ------~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~ 281 (664)
..++-+||+|++.. ..++..+....+. .|+++|+.--.
T Consensus 85 ~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 85 DEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp CCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred ccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 12235999999864 3456666666543 47788876543
No 286
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.03 E-value=0.0065 Score=64.71 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=39.4
Q ss_pred CCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 158 KDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
...++||++.++.+...+..+. .|.|.|++|+|||+||+.+......
T Consensus 19 ~~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 4578999999999988776543 5899999999999999999987543
No 287
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.12 Score=47.29 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=24.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
+.|.++|+.|+||||+.+.+++...-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999999866555
No 288
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.99 E-value=0.0065 Score=57.84 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.9
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhc
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
+|+|.|.+|+||||+|+++...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999998764
No 289
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.96 E-value=0.0053 Score=52.10 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=22.3
Q ss_pred EEEecCCCCChHHHHHHHHHHhhccC
Q 006018 185 VGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
|-|+|.+|+|||+||+.++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998866544
No 290
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.033 Score=53.45 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhh-hcc
Q 006018 159 DQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDES-EKV 226 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-~~~ 226 (664)
.+.=|-.+++++|.+.... +-+..+-|.++|++|.|||-+|++++++... +|+..+.... .+.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-----cfirvigselvqky 251 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-----CFIRVIGSELVQKY 251 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-----eEEeehhHHHHHHH
Confidence 3445666666666554321 1133566889999999999999999998544 4454333221 111
Q ss_pred cchhHHhHHHHHHHhcC-ceEEEEEecCCC
Q 006018 227 GGLANIHLNFERRRLSR-MKVLIVFYDLTD 255 (664)
Q Consensus 227 ~~l~~~~l~~~~~~L~~-~~~LlVlDdv~~ 255 (664)
.+-...-+..+.+.-+. |-++|.+|.++.
T Consensus 252 vgegarmvrelf~martkkaciiffdeida 281 (435)
T KOG0729|consen 252 VGEGARMVRELFEMARTKKACIIFFDEIDA 281 (435)
T ss_pred hhhhHHHHHHHHHHhcccceEEEEeecccc
Confidence 11111112233333344 568888898753
No 291
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.93 E-value=0.063 Score=48.57 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
+|.|+|.+|.||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998864
No 292
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.92 E-value=0.029 Score=57.17 Aligned_cols=48 Identities=21% Similarity=0.235 Sum_probs=35.2
Q ss_pred HHHhhhc-CCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 170 EIESQLL-SGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 170 ~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
.|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 4445554 33355679999999999999999998888666555566664
No 293
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.045 Score=59.49 Aligned_cols=153 Identities=20% Similarity=0.233 Sum_probs=91.7
Q ss_pred CCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc
Q 006018 159 DQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG 227 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 227 (664)
..+-|-...+..+.....- +-...+-+.++|++|+|||-++++|+++.. ..+|..+..+......
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~peli~k~~ 259 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPELISKFP 259 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHHHHHhcc
Confidence 4555666666665554421 113356788999999999999999999865 3445555555555555
Q ss_pred chhHHhHH-HHHHHhcCc-eEEEEEecCCCHH------------HHHHHhccCCCCCCCcEE--EEEeCCHHHHHhhcC-
Q 006018 228 GLANIHLN-FERRRLSRM-KVLIVFYDLTDLK------------QIDLLIGRLDGFVPGSRV--IITTRDVQLLKNHRG- 290 (664)
Q Consensus 228 ~l~~~~l~-~~~~~L~~~-~~LlVlDdv~~~~------------~~~~l~~~~~~~~~gs~I--liTtR~~~~~~~~~~- 290 (664)
+-.+..+. .+.+..+.+ +.++.+|+++..- ...++...+.+.++.+++ |-+|+.+.-....-.
T Consensus 260 gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR 339 (693)
T KOG0730|consen 260 GETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR 339 (693)
T ss_pred cchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc
Confidence 44444443 555666677 8999999875421 122333333444434444 346665433221111
Q ss_pred CccccEEEecCCCHHHHHHHHHHhh
Q 006018 291 SRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 291 ~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
...+....+.-.+..+-.+.+..+.
T Consensus 340 gRfd~ev~IgiP~~~~RldIl~~l~ 364 (693)
T KOG0730|consen 340 GRFDREVEIGIPGSDGRLDILRVLT 364 (693)
T ss_pred CCCcceeeecCCCchhHHHHHHHHH
Confidence 1366778888888777777776665
No 294
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.90 E-value=0.047 Score=50.14 Aligned_cols=102 Identities=20% Similarity=0.169 Sum_probs=55.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcc---eeeccc---hh--hhhcc-------c--------chh------HH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGS---YFMQNI---RD--ESEKV-------G--------GLA------NI 232 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~---~~~~~~---~~--~~~~~-------~--------~l~------~~ 232 (664)
...|-|++-.|.||||.|..++-+...+=-.+ -|+..- .+ ..... + ... ..
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 35788888899999999998888743332222 222211 11 00000 0 000 00
Q ss_pred hHHHHHHHhcCc-eEEEEEecCCCHH-----HHHHHhccCCCCCCCcEEEEEeCCHH
Q 006018 233 HLNFERRRLSRM-KVLIVFYDLTDLK-----QIDLLIGRLDGFVPGSRVIITTRDVQ 283 (664)
Q Consensus 233 ~l~~~~~~L~~~-~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IliTtR~~~ 283 (664)
.++..++.+... --|+|||.+...- ..+.+...+....++..||+|-|+..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 134555555554 4599999974221 12233333333456779999999763
No 295
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.89 E-value=0.0075 Score=46.47 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.9
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
+|+|.|.+|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 296
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.27 Score=50.20 Aligned_cols=72 Identities=22% Similarity=0.276 Sum_probs=48.4
Q ss_pred CChhHhHhhhhhccccccccCCCCCCCCCceeehhhHHHHHhhhcCC----------CCcceEEEEecCCCCChHHHHHH
Q 006018 132 TSESVLIEGNVNDISKKLSDLFPSDNKDQLVGVESIIKEIESQLLSG----------STEFNTVGIWGIGGIGKTTIASA 201 (664)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~v~I~G~gGiGKTtLA~~ 201 (664)
++++.+.+-+-++|.+ ..|...=+++.|..+..+-|++..... ...=+-|.++|++|.|||-||++
T Consensus 189 ~~d~~Lve~lerdIl~----~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKA 264 (491)
T KOG0738|consen 189 GYDADLVEALERDILQ----RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKA 264 (491)
T ss_pred cchHHHHHHHHHHHhc----cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHH
Confidence 5566666666556544 334435567888887777776654321 12234688999999999999999
Q ss_pred HHHHhh
Q 006018 202 IYSNIS 207 (664)
Q Consensus 202 ~~~~~~ 207 (664)
||..-.
T Consensus 265 vATEc~ 270 (491)
T KOG0738|consen 265 VATECG 270 (491)
T ss_pred HHHhhc
Confidence 998744
No 297
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.84 E-value=0.38 Score=46.58 Aligned_cols=167 Identities=13% Similarity=0.157 Sum_probs=86.0
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceeecc--chh-----h-----hhcc-cchh---HHhHHHHHH-HhcC
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQN--IRD-----E-----SEKV-GGLA---NIHLNFERR-RLSR 243 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~--~~~-----~-----~~~~-~~l~---~~~l~~~~~-~L~~ 243 (664)
+-+++.++|.-|.|||.+++++.....+.=-..+.+.+ +.. . .... .... ++..+.+.. .-++
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 34689999999999999999665554322222222221 000 0 0000 0000 000112222 2245
Q ss_pred ce-EEEEEecCCCH--HHHHHHhc--cC-CCCCCCcEEEEEeC----CH---HHHHhhcCCccccE-EEecCCCHHHHHH
Q 006018 244 MK-VLIVFYDLTDL--KQIDLLIG--RL-DGFVPGSRVIITTR----DV---QLLKNHRGSRVGHV-FEVKELSYNDSLT 309 (664)
Q Consensus 244 ~~-~LlVlDdv~~~--~~~~~l~~--~~-~~~~~gs~IliTtR----~~---~~~~~~~~~~~~~~-~~l~~L~~~ea~~ 309 (664)
++ +.+++|+..+. +.++.+.- .+ .....--+|+..-. .. .+....+ . ...+ |++++++.++...
T Consensus 130 ~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~-~-R~~ir~~l~P~~~~~t~~ 207 (269)
T COG3267 130 KRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELE-Q-RIDIRIELPPLTEAETGL 207 (269)
T ss_pred CCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhh-h-eEEEEEecCCcChHHHHH
Confidence 66 89999998643 33333322 11 11111112333221 10 1111111 1 2234 9999999999999
Q ss_pred HHHHhhhCCCCCCccH-HHHHHHHHHHhcCCchhHHHHhhh
Q 006018 310 LFSRNAFGQNHPAAGF-LELSNIVIKYANGVPLALQVLGSY 349 (664)
Q Consensus 310 Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~glPLal~~~a~~ 349 (664)
++..+.-+...+.+-+ .+....|.....|.|.++..++..
T Consensus 208 yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 208 YLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9888764443333322 355667888889999999877643
No 298
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.044 Score=53.47 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=40.5
Q ss_pred CCCCceeehhhHHHHHhhhcCC-----------CCcceEEEEecCCCCChHHHHHHHHHHhhccCC
Q 006018 157 NKDQLVGVESIIKEIESQLLSG-----------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFE 211 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~ 211 (664)
.-.+.=|.+..+++|++..... -...+-|.++|.+|.|||-||++|++..+.-|-
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 3445667788888887765321 123456889999999999999999998776653
No 299
>PTZ00301 uridine kinase; Provisional
Probab=95.81 E-value=0.0091 Score=57.25 Aligned_cols=29 Identities=31% Similarity=0.606 Sum_probs=24.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
..+|+|.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999988875444
No 300
>PRK09354 recA recombinase A; Provisional
Probab=95.81 E-value=0.036 Score=57.03 Aligned_cols=49 Identities=22% Similarity=0.219 Sum_probs=36.6
Q ss_pred HHHHhhhc-CCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 169 KEIESQLL-SGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 169 ~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
..|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 34555664 33355678999999999999999999887666656667765
No 301
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.80 E-value=0.044 Score=50.44 Aligned_cols=105 Identities=15% Similarity=0.196 Sum_probs=58.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeecc--chh-----hhhc-cc---chhHHh--HHHHHHHhcCceEEE
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQN--IRD-----ESEK-VG---GLANIH--LNFERRRLSRMKVLI 248 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~--~~~-----~~~~-~~---~l~~~~--l~~~~~~L~~~~~Ll 248 (664)
-.+++|.|..|.|||||.+.++-... ...+.+++.. +.. .... .+ .+..-+ .-.+.+.+...+-++
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLL 104 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEE
Confidence 35899999999999999999876532 2334444432 111 0010 11 121112 224455666778889
Q ss_pred EEecCC---CHHHHHHHhccCCCC-CCCcEEEEEeCCHHHHHh
Q 006018 249 VFYDLT---DLKQIDLLIGRLDGF-VPGSRVIITTRDVQLLKN 287 (664)
Q Consensus 249 VlDdv~---~~~~~~~l~~~~~~~-~~gs~IliTtR~~~~~~~ 287 (664)
++|+.. +....+.+...+... ..|..||++|.+......
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 999863 223333332222211 236688999988775443
No 302
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.79 E-value=0.048 Score=54.48 Aligned_cols=158 Identities=21% Similarity=0.209 Sum_probs=86.1
Q ss_pred CCCCceeehhhHHHHHhhhcCC--CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc--cc-----
Q 006018 157 NKDQLVGVESIIKEIESQLLSG--STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK--VG----- 227 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~--~~----- 227 (664)
+...++|-.++-.++..++... ..+-.-|.|+|+.|.|||+|......+ .+.|.....+..+...... .+
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHH
Confidence 4467899999999998887532 123456889999999999998877766 3344433333211111111 00
Q ss_pred -chhHH-------------hHHHHHHHhcC------ceEEEEEecCCCH----HH--HHHHhcc-CCCCCCCcEEEEEeC
Q 006018 228 -GLANI-------------HLNFERRRLSR------MKVLIVFYDLTDL----KQ--IDLLIGR-LDGFVPGSRVIITTR 280 (664)
Q Consensus 228 -~l~~~-------------~l~~~~~~L~~------~~~LlVlDdv~~~----~~--~~~l~~~-~~~~~~gs~IliTtR 280 (664)
.++.+ .+.++.+.|+. -++++|+|.++-. .| +-.+... -....|=|-|-+|||
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 00000 13344444433 3689999887632 11 2222221 122356677889999
Q ss_pred CHHHHH---hhcCCc-cccEEEecCCCHHHHHHHHHHhh
Q 006018 281 DVQLLK---NHRGSR-VGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 281 ~~~~~~---~~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
-..... +....- -..++-.+.++-++-.+++....
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 542211 111110 22356667777777777776554
No 303
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.77 E-value=0.037 Score=56.43 Aligned_cols=48 Identities=21% Similarity=0.222 Sum_probs=35.6
Q ss_pred HHHhhhc-CCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 170 EIESQLL-SGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 170 ~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
.|..+|. .+-..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 4445554 33345678999999999999999999887666556666765
No 304
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.25 Score=54.36 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=82.7
Q ss_pred CceeehhhHHHHHhhhcCCC-----------CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccc
Q 006018 160 QLVGVESIIKEIESQLLSGS-----------TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGG 228 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~~-----------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 228 (664)
++=|+.+..+.+++.+.-.. .-..-|.++|++|+|||-||-+++....-+|-. + .--+...+.-+
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fis---v-KGPElL~KyIG 743 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFIS---V-KGPELLSKYIG 743 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEE---e-cCHHHHHHHhc
Confidence 34455555555666554322 112348899999999999999998864433311 1 11223333333
Q ss_pred hhHHhHHHHHHH-hcCceEEEEEecCCCHH-------------HHHHHhccCCCC--CCCcEEEE-EeCCHHHHH-hhcC
Q 006018 229 LANIHLNFERRR-LSRMKVLIVFYDLTDLK-------------QIDLLIGRLDGF--VPGSRVII-TTRDVQLLK-NHRG 290 (664)
Q Consensus 229 l~~~~l~~~~~~-L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs~Ili-TtR~~~~~~-~~~~ 290 (664)
-.++.++.+..+ -.-+++++.+|.+++.. ...+++..++.. -.|.-|+. |||-.-+-. ....
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRp 823 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRP 823 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCC
Confidence 344444444333 34589999999987532 355666655432 24555554 666332211 1111
Q ss_pred CccccEEEecCCCHHHHHHHHHHhh
Q 006018 291 SRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 291 ~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
.+.+..+.-+.-+..|-.+.|....
T Consensus 824 GRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 824 GRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred CccceeeeCCCCCcHHHHHHHHHHh
Confidence 1234445555556667777776554
No 305
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.74 E-value=0.016 Score=63.34 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=23.5
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHH
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
..-++..++|++|+||||||..++++
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq 349 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ 349 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh
Confidence 44689999999999999999999986
No 306
>PRK03839 putative kinase; Provisional
Probab=95.73 E-value=0.0086 Score=56.23 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.7
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 307
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.31 Score=54.14 Aligned_cols=150 Identities=21% Similarity=0.192 Sum_probs=82.5
Q ss_pred ceeehhhHHHHHhhhcCCC-------CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 161 LVGVESIIKEIESQLLSGS-------TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
..+++..+.++.+.+.... .-..++.++|.+|+||||++++++....-|+ +=.+..+.........+..
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~----~evdc~el~~~s~~~~etk 478 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHL----LEVDCYELVAESASHTETK 478 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCce----EeccHHHHhhcccchhHHH
Confidence 4577777777777775432 2356789999999999999999998865442 2223333333333333333
Q ss_pred HHHHHHHhc-CceEEEEEecCCC-------HHH------HHHHhc-c-CCCCCCCcEEEEEeCC-HHHHHhhcCCccccE
Q 006018 234 LNFERRRLS-RMKVLIVFYDLTD-------LKQ------IDLLIG-R-LDGFVPGSRVIITTRD-VQLLKNHRGSRVGHV 296 (664)
Q Consensus 234 l~~~~~~L~-~~~~LlVlDdv~~-------~~~------~~~l~~-~-~~~~~~gs~IliTtR~-~~~~~~~~~~~~~~~ 296 (664)
+..+..+-+ -.+..|.|-|++- .++ ++.+.. . .+...++..++.||-+ +++....... ..+.
T Consensus 479 l~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~-f~~e 557 (953)
T KOG0736|consen 479 LQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSL-FLHE 557 (953)
T ss_pred HHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHh-hhhh
Confidence 333332222 2455555555421 111 222222 1 1212333334444432 2332222111 3567
Q ss_pred EEecCCCHHHHHHHHHHhh
Q 006018 297 FEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 297 ~~l~~L~~~ea~~Lf~~~a 315 (664)
++++.+++++-.++|+.+.
T Consensus 558 i~~~~lse~qRl~iLq~y~ 576 (953)
T KOG0736|consen 558 IEVPALSEEQRLEILQWYL 576 (953)
T ss_pred ccCCCCCHHHHHHHHHHHH
Confidence 8999999999999999887
No 308
>PRK08233 hypothetical protein; Provisional
Probab=95.72 E-value=0.0094 Score=55.98 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=23.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..+|+|.|.+|+||||||+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998753
No 309
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.087 Score=54.73 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.2
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..++|+++|++|+||||++..++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3579999999999999999999887554
No 310
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.70 E-value=0.021 Score=59.77 Aligned_cols=49 Identities=20% Similarity=0.257 Sum_probs=35.1
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
.++.+.|..+-....++.|.|.+|+|||||+.+++......-..+.|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555433344568999999999999999999988766544555553
No 311
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.69 E-value=0.011 Score=57.03 Aligned_cols=27 Identities=44% Similarity=0.621 Sum_probs=24.1
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999999876
No 312
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.21 Score=52.20 Aligned_cols=155 Identities=16% Similarity=0.156 Sum_probs=84.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHhcCceEEEEEecCCCHHH----
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRLSRMKVLIVFYDLTDLKQ---- 258 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~~~---- 258 (664)
|--.++|+||.|||++..++++... |+ ++.-.+.+.. .+.+|+.+.-.. ..+-+||+.|++-.-+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~--yd--IydLeLt~v~------~n~dLr~LL~~t-~~kSIivIEDIDcs~~l~~~ 304 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN--YD--IYDLELTEVK------LDSDLRHLLLAT-PNKSILLIEDIDCSFDLRER 304 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC--Cc--eEEeeecccc------CcHHHHHHHHhC-CCCcEEEEeecccccccccc
Confidence 4456999999999999999998642 22 2211111110 011233332222 3467778888764211
Q ss_pred ----------------HHHHhccCCC--CCC-CcEEEE-EeCCHHHHH--hhcCCccccEEEecCCCHHHHHHHHHHhhh
Q 006018 259 ----------------IDLLIGRLDG--FVP-GSRVII-TTRDVQLLK--NHRGSRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 259 ----------------~~~l~~~~~~--~~~-gs~Ili-TtR~~~~~~--~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
+--|+..+.+ ... +-|||| ||-..+-+. .+.....+..+.+.--+.+....|+.++..
T Consensus 305 ~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 305 RKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred cccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 1112222221 111 236655 776554432 122223566788899999999999998873
Q ss_pred CCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhc-CCC
Q 006018 317 GQNHPAAGFLELSNIVIKYANGVPLALQVLGSYL-KGM 353 (664)
Q Consensus 317 ~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l-~~~ 353 (664)
... ...+..+|.+...+.-+.=..++..| +.+
T Consensus 385 ~~~-----~h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 385 IEE-----DHRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCC-----CcchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 222 12455566666666655556555555 444
No 313
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.023 Score=52.64 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=26.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
+.|.+.|.+|+||||+|+++++..++.-..++.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l 35 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHL 35 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcccc
Confidence 4678999999999999999998866655444443
No 314
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.12 Score=49.37 Aligned_cols=150 Identities=21% Similarity=0.306 Sum_probs=83.8
Q ss_pred CCCcee-ehhhHHHHHhhhcCCC-----------CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchh-hhh
Q 006018 158 KDQLVG-VESIIKEIESQLLSGS-----------TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRD-ESE 224 (664)
Q Consensus 158 ~~~~vG-r~~~~~~l~~~L~~~~-----------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~-~~~ 224 (664)
..+.|| .|..+++|++.+...- ...+-|.++|++|.|||-||+++++.. .+.|+..... ...
T Consensus 145 tYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~firvsgselvq 219 (404)
T KOG0728|consen 145 TYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIRVSGSELVQ 219 (404)
T ss_pred HHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEEechHHHHH
Confidence 344554 4778888877664321 235668899999999999999999863 3344432111 111
Q ss_pred cccchhHHhHHHHHHH----hcCceEEEEEecCCCHH-------------H---HHHHhccCCCC--CCCcEEEEEeCCH
Q 006018 225 KVGGLANIHLNFERRR----LSRMKVLIVFYDLTDLK-------------Q---IDLLIGRLDGF--VPGSRVIITTRDV 282 (664)
Q Consensus 225 ~~~~l~~~~l~~~~~~----L~~~~~LlVlDdv~~~~-------------~---~~~l~~~~~~~--~~gs~IliTtR~~ 282 (664)
+.-+ +--...++. -.+-+-+|..|.+++.. . .-+++..+..+ .+.-+||..|-.-
T Consensus 220 k~ig---egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnri 296 (404)
T KOG0728|consen 220 KYIG---EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRI 296 (404)
T ss_pred HHhh---hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccc
Confidence 1000 001111211 13457889999986532 1 12334444433 3456788766544
Q ss_pred HHHHhh--cCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 283 QLLKNH--RGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 283 ~~~~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
+++... .....+..++.++-+.+.-.++++-+.
T Consensus 297 dild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 297 DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 443221 212255667777777777777776654
No 315
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.11 Score=52.64 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=74.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHh-cCceEEEEEecCCCHH---
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRL-SRMKVLIVFYDLTDLK--- 257 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L-~~~~~LlVlDdv~~~~--- 257 (664)
.+-|.++|++|.|||.||++++.+....|-.+-.-.-..+-+ +-.+.-+..+.-.- +=++..|.+|.|++.-
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWf----gE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R 202 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWF----GEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR 202 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhH----HHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc
Confidence 456889999999999999999999777775432211111111 00000011111110 2257888999886532
Q ss_pred -------------HHHHHhccCCCCCCCcEEEE---EeCCHHHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCC-C
Q 006018 258 -------------QIDLLIGRLDGFVPGSRVII---TTRDVQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQN-H 320 (664)
Q Consensus 258 -------------~~~~l~~~~~~~~~gs~Ili---TtR~~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~ 320 (664)
++-.+...+. ...+.+||| |-|-.++....-. ...+.+.|.--+.++-.+.++-..-... .
T Consensus 203 ~s~dHEa~a~mK~eFM~~WDGl~-s~~~~rVlVlgATNRP~DlDeAiiR-R~p~rf~V~lP~~~qR~kILkviLk~e~~e 280 (386)
T KOG0737|consen 203 RSTDHEATAMMKNEFMALWDGLS-SKDSERVLVLGATNRPFDLDEAIIR-RLPRRFHVGLPDAEQRRKILKVILKKEKLE 280 (386)
T ss_pred ccchHHHHHHHHHHHHHHhcccc-CCCCceEEEEeCCCCCccHHHHHHH-hCcceeeeCCCchhhHHHHHHHHhcccccC
Confidence 1111111222 134457877 6665444332211 1345666665555555555544331111 1
Q ss_pred CCccHHHHHHHHHHHhcCCc
Q 006018 321 PAAGFLELSNIVIKYANGVP 340 (664)
Q Consensus 321 ~~~~~~~~~~~i~~~~~glP 340 (664)
+.-+ ..+++..+.|.-
T Consensus 281 ~~vD----~~~iA~~t~GyS 296 (386)
T KOG0737|consen 281 DDVD----LDEIAQMTEGYS 296 (386)
T ss_pred cccC----HHHHHHhcCCCc
Confidence 2222 345666666654
No 316
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.67 E-value=0.027 Score=58.22 Aligned_cols=40 Identities=13% Similarity=0.044 Sum_probs=29.5
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
++.+.+..-. .-..++|+|.+|+|||||++.+++.+..+.
T Consensus 122 RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~ 161 (380)
T PRK12608 122 RVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANH 161 (380)
T ss_pred hhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3555554322 234679999999999999999999876654
No 317
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.65 E-value=0.072 Score=48.98 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=36.1
Q ss_pred HHHHHhcCceEEEEEec----CCCHHHHHHH--hccCCCCCCCcEEEEEeCCHHHHHhhc
Q 006018 236 FERRRLSRMKVLIVFYD----LTDLKQIDLL--IGRLDGFVPGSRVIITTRDVQLLKNHR 289 (664)
Q Consensus 236 ~~~~~L~~~~~LlVlDd----v~~~~~~~~l--~~~~~~~~~gs~IliTtR~~~~~~~~~ 289 (664)
.+.+.+-+++-+++-|. ++....|+-+ ...+ ...|..||++|-+.++...+.
T Consensus 147 aIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 147 AIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhcc
Confidence 55666778888999996 4444444432 3333 356899999999999987765
No 318
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.63 E-value=0.041 Score=49.93 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=18.5
Q ss_pred EecCCCCChHHHHHHHHHHh
Q 006018 187 IWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 187 I~G~gGiGKTtLA~~~~~~~ 206 (664)
|.|++|+||||+|+.++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999975
No 319
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.63 E-value=0.016 Score=50.82 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=27.7
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..++.+.|...-....+|.+.|.-|+||||+++.+++..
T Consensus 8 t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 8 MDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 334444443222334589999999999999999999874
No 320
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.60 E-value=0.0044 Score=35.65 Aligned_cols=21 Identities=43% Similarity=0.797 Sum_probs=12.4
Q ss_pred CCCEEEccCCCCccccccccC
Q 006018 582 SLEYLNLAEKDFEKIPSSMKQ 602 (664)
Q Consensus 582 ~L~~L~l~~n~i~~lp~~i~~ 602 (664)
+|++|++++|.++.+|++|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 321
>PRK04040 adenylate kinase; Provisional
Probab=95.60 E-value=0.012 Score=55.55 Aligned_cols=25 Identities=28% Similarity=0.516 Sum_probs=22.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|+|+|++|+||||+++.+.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999999874
No 322
>PRK00625 shikimate kinase; Provisional
Probab=95.59 E-value=0.01 Score=55.03 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.4
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.|.|+||+|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998754
No 323
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.59 E-value=0.068 Score=50.36 Aligned_cols=104 Identities=15% Similarity=0.037 Sum_probs=54.8
Q ss_pred EEEEecCCCCChHHHHHHHHHH-hhccCCcceeec--------c------chhhhhcccchhHHhHHHHHHHhcC--ceE
Q 006018 184 TVGIWGIGGIGKTTIASAIYSN-ISSHFEGSYFMQ--------N------IRDESEKVGGLANIHLNFERRRLSR--MKV 246 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~-~~~~f~~~~~~~--------~------~~~~~~~~~~l~~~~l~~~~~~L~~--~~~ 246 (664)
++.|.|..|.||||+.+.+.-. +..+-...++-. . ..+.......--..++..+...+.. ++-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 4679999999999999988843 222211111110 0 0010000001111133344555544 789
Q ss_pred EEEEecCCC---HHH----HHHHhccCCCCCCCcEEEEEeCCHHHHHhh
Q 006018 247 LIVFYDLTD---LKQ----IDLLIGRLDGFVPGSRVIITTRDVQLLKNH 288 (664)
Q Consensus 247 LlVlDdv~~---~~~----~~~l~~~~~~~~~gs~IliTtR~~~~~~~~ 288 (664)
|+++|.... ... ...+...+.. ..++.+|++|.+.++...+
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 999999742 221 1222222221 1367899999988776544
No 324
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.57 E-value=0.019 Score=55.41 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=34.1
Q ss_pred hhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeecc
Q 006018 174 QLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQN 218 (664)
Q Consensus 174 ~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 218 (664)
+|..+-....++.|+|.+|+|||++|.+++......-..++|+..
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 343333456799999999999999999999887665566777753
No 325
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.57 E-value=0.011 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEecCCCCChHHHHHHHHHHhh
Q 006018 185 VGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
|.|+|.+|+|||+||+.+++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67999999999999999999873
No 326
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.56 E-value=0.013 Score=56.36 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=24.2
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
+...+|+|.|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999988654
No 327
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.53 E-value=0.075 Score=53.04 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=61.6
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec--------cchhhhhcccchhHHh-------------HHHHHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ--------NIRDESEKVGGLANIH-------------LNFERR 239 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~--------~~~~~~~~~~~l~~~~-------------l~~~~~ 239 (664)
+...++|.|..|.|||||.+.++..+... .+.+++. .-.+.......+...+ ...+..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~ 188 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMM 188 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHH
Confidence 35689999999999999999999876543 1222221 1112211111111110 112222
Q ss_pred Hh-cCceEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHHH
Q 006018 240 RL-SRMKVLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLLK 286 (664)
Q Consensus 240 ~L-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~ 286 (664)
.+ ...+-++++|.+...+.+..+...+. .|..||+||-+..+..
T Consensus 189 ~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 189 LIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred HHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 22 25788999999988887777766653 4778999998766643
No 328
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.51 E-value=0.025 Score=54.95 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=35.6
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
..|..+|..+-..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455566444445678999999999999999999988655444555553
No 329
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.49 E-value=0.013 Score=54.60 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...|.|+|++|+||||+|+++++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999999863
No 330
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.036 Score=56.97 Aligned_cols=86 Identities=21% Similarity=0.250 Sum_probs=52.2
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccch---hhh---hccc-------chhHHhH
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIR---DES---EKVG-------GLANIHL 234 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~---~~~---~~~~-------~l~~~~l 234 (664)
+.++.+.|-.+--.-.+|.|-|-+|||||||..+++.++..+. .+.++..-. +.. .+.+ -+.+..+
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~ 157 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNL 157 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCH
Confidence 3455555533223346899999999999999999999988776 666664211 110 1111 1122235
Q ss_pred HHHHHHhcC-ceEEEEEecCC
Q 006018 235 NFERRRLSR-MKVLIVFYDLT 254 (664)
Q Consensus 235 ~~~~~~L~~-~~~LlVlDdv~ 254 (664)
+.+.+.+.. ++-++|+|-+.
T Consensus 158 e~I~~~l~~~~p~lvVIDSIQ 178 (456)
T COG1066 158 EDIIAELEQEKPDLVVIDSIQ 178 (456)
T ss_pred HHHHHHHHhcCCCEEEEeccc
Confidence 555555544 56788888764
No 331
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.47 E-value=0.56 Score=47.60 Aligned_cols=162 Identities=12% Similarity=0.105 Sum_probs=94.5
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc---------CC-cceeeccchhhhhcccchhHHhHHHH
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH---------FE-GSYFMQNIRDESEKVGGLANIHLNFE 237 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~---------f~-~~~~~~~~~~~~~~~~~l~~~~l~~~ 237 (664)
++.+...+..+ .-..+..++|..|+||+++|..+.+.+-.. .+ ...+++ ... ....-.++..+
T Consensus 5 ~~~l~~~i~~~-~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g-----~~i~vd~Ir~l 77 (299)
T PRK07132 5 IKFLDNSATQN-KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD-----KDLSKSEFLSA 77 (299)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC-----CcCCHHHHHHH
Confidence 34455555332 234677799999999999999999986221 11 111111 000 11111223333
Q ss_pred HHHh-----c-CceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCccccEEEecCCCHHHHH
Q 006018 238 RRRL-----S-RMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSRVGHVFEVKELSYNDSL 308 (664)
Q Consensus 238 ~~~L-----~-~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~~~~~~l~~L~~~ea~ 308 (664)
.+.+ . +.+-++|+|+++.. .....++..+....+.+.+|++|.+. .+..... ..+..+++.+++.++..
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~--SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIV--SRCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHH--hCeEEEECCCCCHHHHH
Confidence 3333 1 46778888998755 34667777777767777777766544 3333222 14678999999999998
Q ss_pred HHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHH
Q 006018 309 TLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 309 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 346 (664)
+.+.... .+ .+.+..++...+|.--|+..+
T Consensus 156 ~~l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 156 AKLLSKN-----KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHHcC-----CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 8776531 11 233555666666633455443
No 332
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.47 E-value=0.089 Score=49.32 Aligned_cols=105 Identities=22% Similarity=0.356 Sum_probs=57.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeecc--chh-----hhhccc---------chhHH-----------h-
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQN--IRD-----ESEKVG---------GLANI-----------H- 233 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~--~~~-----~~~~~~---------~l~~~-----------~- 233 (664)
-.+++|.|..|.|||||++.++-.... ..+.+++.. +.. .....+ ++.+. +
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~ 103 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGER 103 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHH
Confidence 358999999999999999998865322 233333321 100 000000 11110 1
Q ss_pred -HHHHHHHhcCceEEEEEecCC---CHHHHHHHhccCCCC-CC-CcEEEEEeCCHHHHHh
Q 006018 234 -LNFERRRLSRMKVLIVFYDLT---DLKQIDLLIGRLDGF-VP-GSRVIITTRDVQLLKN 287 (664)
Q Consensus 234 -l~~~~~~L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~-~~-gs~IliTtR~~~~~~~ 287 (664)
.-.+...+...+-++++|+.. +.+..+.+...+... .. +..||++|.+.+....
T Consensus 104 qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 114455666778899999963 233333333322221 12 5688899988776543
No 333
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.46 E-value=0.057 Score=48.97 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=38.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec--cchhhhhcccchhHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ--NIRDESEKVGGLANI 232 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~l~~~ 232 (664)
...+|-+.|.+|.||||+|.++++....+.-.+..++ +++.......++..+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~e 75 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSRE 75 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChH
Confidence 3468899999999999999999999877766666653 566655544444444
No 334
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.44 E-value=0.021 Score=55.87 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=25.8
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
....+|+|.|..|.|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999999999998876543
No 335
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.44 E-value=0.13 Score=50.12 Aligned_cols=199 Identities=15% Similarity=0.224 Sum_probs=111.5
Q ss_pred CCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc------cCCcceeeccchh---------h
Q 006018 158 KDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS------HFEGSYFMQNIRD---------E 222 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~---------~ 222 (664)
.+.+.++++.-..+.++.. ..+.+...++|+.|.||-|.+..+.+++-+ +-+...|...... .
T Consensus 12 l~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 12 LDELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred hhhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 3457788877778877765 345778899999999999999998887422 2233334321111 0
Q ss_pred hh-----cccchhHH-h-HHHHHHHh--------cCceE-EEEEecCCCH--HHHHHHhccCCCCCCCcEEEEE----eC
Q 006018 223 SE-----KVGGLANI-H-LNFERRRL--------SRMKV-LIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIIT----TR 280 (664)
Q Consensus 223 ~~-----~~~~l~~~-~-l~~~~~~L--------~~~~~-LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliT----tR 280 (664)
.. ...+..+. - .+.+++.- ..+.+ ++|+-.++.. +.-..+..........+|+|+. ||
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSR 169 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCccc
Confidence 00 00011110 0 11111111 12233 5556666543 3333444444444667888874 44
Q ss_pred CHHHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch-hHHHHhhhcC--------
Q 006018 281 DVQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL-ALQVLGSYLK-------- 351 (664)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~a~~l~-------- 351 (664)
--+.... ..-.+.++..+++|-...++..+-+..-..+ .+++.+|++.++|+-. ||-++ ..++
T Consensus 170 iIepIrS-----RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllml-E~~~~~n~~~~a 241 (351)
T KOG2035|consen 170 IIEPIRS-----RCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLML-EAVRVNNEPFTA 241 (351)
T ss_pred chhHHhh-----heeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHH-HHHHhccccccc
Confidence 2222211 2446899999999999999887743333222 6889999999988742 32221 1111
Q ss_pred ---CCCHHHHHHHHHHhh
Q 006018 352 ---GMSEEEWESAVNKLK 366 (664)
Q Consensus 352 ---~~~~~~w~~~l~~l~ 366 (664)
....-+|+-.+.+..
T Consensus 242 ~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 242 NSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred cCCCCCCccHHHHHHHHH
Confidence 124578888877753
No 336
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.43 E-value=0.14 Score=47.87 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=55.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccc--hh---hhhc-c-------------------cchhHHh--H
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNI--RD---ESEK-V-------------------GGLANIH--L 234 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~---~~~~-~-------------------~~l~~~~--l 234 (664)
-.+++|.|..|.|||||++.++-.... ..+.+++... .. .... . ..+..-+ .
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qr 106 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQR 106 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHH
Confidence 358999999999999999998765321 1222222210 00 0000 0 0011011 1
Q ss_pred HHHHHHhcCceEEEEEecCCC---HHHHHHHhccCCCCCCCcEEEEEeCCHHHHH
Q 006018 235 NFERRRLSRMKVLIVFYDLTD---LKQIDLLIGRLDGFVPGSRVIITTRDVQLLK 286 (664)
Q Consensus 235 ~~~~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~ 286 (664)
-.+...+..++-++++|+..+ ....+.+...+.....+..||++|.+.+...
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 144555667788999998642 2222222222221123678889998877664
No 337
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.42 E-value=0.014 Score=55.19 Aligned_cols=26 Identities=27% Similarity=0.233 Sum_probs=23.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
++++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 338
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.37 E-value=0.019 Score=54.38 Aligned_cols=30 Identities=30% Similarity=0.446 Sum_probs=26.7
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
..+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346799999999999999999999998766
No 339
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.34 E-value=0.0077 Score=58.05 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=90.1
Q ss_pred CCccCcCcccEEEcCCCCCCcccccccc-------ccccccccccccccccc--------------ccCCCCCCcEEeec
Q 006018 483 PTGINLDSLKELYLGGCSNLKRFPEISC-------NIEDLDLKETAIEELPS--------------SIGNLSRLVDLDLT 541 (664)
Q Consensus 483 p~~~~l~~L~~L~l~~~~~~~~~p~~~~-------~L~~L~l~~~~i~~lp~--------------~~~~l~~L~~L~l~ 541 (664)
|...+|+.|+..+||.|.+...+|+.+. .|.+|.|++|.+..+.. ...+-+.|++....
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 3345689999999999987766665433 78999999998864322 13355778888877
Q ss_pred CCCCCCcccc-----ccCCCCCCCEEeeeCCCCCCc-----cccccCCCCCCCEEEccCCCCccc-----cccccCCCCC
Q 006018 542 NCSGLKSVSS-----RLCNLKSLRRLNLSGCLKLEK-----LPEEIGNLESLEYLNLAEKDFEKI-----PSSMKQLSKL 606 (664)
Q Consensus 542 ~~~~l~~lp~-----~~~~l~~L~~L~L~~~~~~~~-----~p~~l~~l~~L~~L~l~~n~i~~l-----p~~i~~L~~L 606 (664)
.| .+.+.|. .+..-..|+.+.+..|.+-.. +-..+..+.+|+.|||..|-++.. ...+...+.|
T Consensus 166 rN-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 166 RN-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred cc-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 64 4444432 122336888999988875432 112334667999999999988733 2334555678
Q ss_pred CEEeecCCCC
Q 006018 607 SDLRLQNCKR 616 (664)
Q Consensus 607 ~~L~L~~~~~ 616 (664)
+.|++..|-+
T Consensus 245 rEL~lnDCll 254 (388)
T COG5238 245 RELRLNDCLL 254 (388)
T ss_pred hhccccchhh
Confidence 9999999865
No 340
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.31 E-value=0.42 Score=52.68 Aligned_cols=51 Identities=25% Similarity=0.234 Sum_probs=39.3
Q ss_pred CCCCceeehhhHHHHHhhhcC---CCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 157 NKDQLVGVESIIKEIESQLLS---GSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
....+-+||.+..+|.+.+.. .......+-|.|.+|.|||..+..|.+...
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq 447 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQ 447 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHH
Confidence 334577899999999887743 212345888999999999999999998643
No 341
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.30 E-value=0.11 Score=47.39 Aligned_cols=105 Identities=25% Similarity=0.275 Sum_probs=59.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccc--hh----hh-hccc---chhHHh--HHHHHHHhcCceEEEEE
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNI--RD----ES-EKVG---GLANIH--LNFERRRLSRMKVLIVF 250 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~----~~-~~~~---~l~~~~--l~~~~~~L~~~~~LlVl 250 (664)
.+++|.|..|.|||||++.++.... ...+.+++... .. .. .... .+..-+ .-.+...+...+-++++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~il 104 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLL 104 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999987543 23444444321 10 00 0011 011112 22445556667889999
Q ss_pred ecCC---CHHHHHHHhccCCCC-CCCcEEEEEeCCHHHHHhh
Q 006018 251 YDLT---DLKQIDLLIGRLDGF-VPGSRVIITTRDVQLLKNH 288 (664)
Q Consensus 251 Ddv~---~~~~~~~l~~~~~~~-~~gs~IliTtR~~~~~~~~ 288 (664)
|+.. +......+...+... ..+..++++|-+.......
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 9974 233333332222111 1256788888887776554
No 342
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=95.29 E-value=0.05 Score=47.09 Aligned_cols=60 Identities=23% Similarity=0.350 Sum_probs=50.5
Q ss_pred eEEEeccccccccchHHHHHHHHhhCCCceeecC-CcCCCCcccHHHHHhhhcCcEEEEEecCC
Q 006018 17 DVFLSFRGKDVRHNFVSHLNAALCREKIETFIDD-KLNRGNEISPSLSSAIEGSKISIVIFSEG 79 (664)
Q Consensus 17 dvFis~~~~d~~~~f~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~ 79 (664)
.|||.|. +|. ..++.+...|+..|+.+.+=. ....|..+.+.+.+.+.++..+|++++|+
T Consensus 1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD 61 (125)
T PF10137_consen 1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD 61 (125)
T ss_pred CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence 3899998 553 568899999998898865444 66899999999999999999999999993
No 343
>PRK06547 hypothetical protein; Provisional
Probab=95.29 E-value=0.018 Score=53.33 Aligned_cols=27 Identities=41% Similarity=0.382 Sum_probs=23.8
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
....+|+|.|.+|+||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998873
No 344
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=95.27 E-value=0.098 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.063 Sum_probs=20.4
Q ss_pred eEEEEecCCCCChHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~ 204 (664)
.+++|.|..|.||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 345
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.08 Score=60.60 Aligned_cols=97 Identities=15% Similarity=0.254 Sum_probs=63.6
Q ss_pred CCceeehhhHHHHHhhhcCCC------CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchh---hhhccc--
Q 006018 159 DQLVGVESIIKEIESQLLSGS------TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRD---ESEKVG-- 227 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~---~~~~~~-- 227 (664)
..++|.++.+..|.+.+.... +......+.|+.|+|||.||++++.-+.+..+.-+-+. .++ .....+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-mse~~evskligsp 640 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MSEFQEVSKLIGSP 640 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hhhhhhhhhccCCC
Confidence 357788888888877775322 13556789999999999999999998765554443332 222 111111
Q ss_pred -c-hhHHhHHHHHHHhcCceE-EEEEecCCCH
Q 006018 228 -G-LANIHLNFERRRLSRMKV-LIVFYDLTDL 256 (664)
Q Consensus 228 -~-l~~~~l~~~~~~L~~~~~-LlVlDdv~~~ 256 (664)
+ ....+.+.+.+.++++++ +|+||||+..
T Consensus 641 ~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 641 PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 1 222346788899999876 4556999754
No 346
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.26 E-value=0.026 Score=54.76 Aligned_cols=42 Identities=24% Similarity=0.423 Sum_probs=29.5
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
-.++.+.+.....+..+|+|.|+||+|||||..++...+..+
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 334444444444567899999999999999999988876543
No 347
>PRK13947 shikimate kinase; Provisional
Probab=95.25 E-value=0.015 Score=54.02 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.1
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhc
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.|.|+|++|+||||+|+.+++...-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998643
No 348
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.24 E-value=0.14 Score=49.81 Aligned_cols=25 Identities=24% Similarity=-0.013 Sum_probs=21.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
+.+++.|.|+.|.||||+.+.+..-
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHH
Confidence 4578999999999999999987643
No 349
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.22 E-value=0.035 Score=55.81 Aligned_cols=55 Identities=27% Similarity=0.292 Sum_probs=43.9
Q ss_pred CCCCceeehhhHHH---HHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCC
Q 006018 157 NKDQLVGVESIIKE---IESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE 211 (664)
Q Consensus 157 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~ 211 (664)
..+.+||..+.-+. +.+++.++.-.-+.|.|+|++|.|||+||..+++.....-+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 56789998876554 56777666556788999999999999999999999775433
No 350
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.21 E-value=0.17 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~ 204 (664)
-.+++|.|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 35899999999999999998863
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=95.21 E-value=0.12 Score=47.12 Aligned_cols=44 Identities=25% Similarity=0.328 Sum_probs=30.1
Q ss_pred eeehhhHHHHHhhhcCCC-CcceEEEEecCCCCChHHHHHHHHHH
Q 006018 162 VGVESIIKEIESQLLSGS-TEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 162 vGr~~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.|.+..++.+.+.+.... .....|+++|++|+|||||...+..+
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~ 125 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSK 125 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcC
Confidence 456666666666543211 12346789999999999999988753
No 352
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.17 E-value=0.022 Score=59.47 Aligned_cols=52 Identities=21% Similarity=0.315 Sum_probs=37.9
Q ss_pred CCceeehhhHHHHHhhhcCC------------CCcceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 159 DQLVGVESIIKEIESQLLSG------------STEFNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~------------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
.++||.++.++.+.-.+... ....+.|.++|++|+|||++|+.++......|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46788888888775444321 11236789999999999999999999865433
No 353
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.17 E-value=0.022 Score=59.44 Aligned_cols=98 Identities=21% Similarity=0.377 Sum_probs=56.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc----cCCcceeeccchhhhhcccchhHHhHHHHHHHhcCceEEEEEecCC--
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS----HFEGSYFMQNIRDESEKVGGLANIHLNFERRRLSRMKVLIVFYDLT-- 254 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~-- 254 (664)
..+=+-|||..|.|||.|+-.+|+.... +....-|...+.+......+ ...-+..+.+.+.++..||.+|.+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~-~~~~l~~va~~l~~~~~lLcfDEF~V~ 139 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRG-QDDPLPQVADELAKESRLLCFDEFQVT 139 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhC-CCccHHHHHHHHHhcCCEEEEeeeecc
Confidence 3567889999999999999999998433 22223344333332222110 0011456667778888899999864
Q ss_pred CHHH---HHHHhccCCCCCCCcEEEEEeCCH
Q 006018 255 DLKQ---IDLLIGRLDGFVPGSRVIITTRDV 282 (664)
Q Consensus 255 ~~~~---~~~l~~~~~~~~~gs~IliTtR~~ 282 (664)
+..+ +..+...+ +..|. |||+|-|.
T Consensus 140 DiaDAmil~rLf~~l--~~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 140 DIADAMILKRLFEAL--FKRGV-VLVATSNR 167 (362)
T ss_pred chhHHHHHHHHHHHH--HHCCC-EEEecCCC
Confidence 3332 33333333 23454 55555543
No 354
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.15 E-value=0.12 Score=55.09 Aligned_cols=47 Identities=19% Similarity=0.220 Sum_probs=36.6
Q ss_pred CceeehhhHHHHHhhhc-----CCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 160 QLVGVESIIKEIESQLL-----SGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~-----~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
++-=....+.++..||. ...-+.+++.|.|++|+||||-.+.++...
T Consensus 83 eLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 83 ELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 34444567788888887 344456799999999999999999988864
No 355
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.15 E-value=0.032 Score=56.96 Aligned_cols=59 Identities=27% Similarity=0.254 Sum_probs=41.5
Q ss_pred CCCCceeehhhHHH---HHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCccee
Q 006018 157 NKDQLVGVESIIKE---IESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYF 215 (664)
Q Consensus 157 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 215 (664)
....+||..+..+. +.+++..+.-.-+.|.+.|++|.|||+||..+++......+.+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 45689999876665 456666554456889999999999999999999998876655443
No 356
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.15 E-value=0.17 Score=46.75 Aligned_cols=102 Identities=22% Similarity=0.113 Sum_probs=54.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec-----------------cchhhhh--cccchhHHh--HHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ-----------------NIRDESE--KVGGLANIH--LNFERRR 240 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-----------------~~~~~~~--~~~~l~~~~--l~~~~~~ 240 (664)
-.+++|.|..|.|||||++.++-.... ..+.+++. .+.+... ....+..-+ .-.+.+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 358999999999999999998865321 11212111 1111111 001111111 1244555
Q ss_pred hcCceEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCCHHHHH
Q 006018 241 LSRMKVLIVFYDLT---DLKQIDLLIGRLDGFVPGSRVIITTRDVQLLK 286 (664)
Q Consensus 241 L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~ 286 (664)
+..++-++++|+-. +.+..+.+...+... +..||++|.+.....
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 66778888999863 222233333322222 356888888776543
No 357
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.15 E-value=0.019 Score=53.57 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988753
No 358
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.15 E-value=0.048 Score=58.91 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=35.8
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
+.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..+.|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 44566666544445678999999999999999999887655433455553
No 359
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.13 E-value=0.084 Score=49.27 Aligned_cols=101 Identities=20% Similarity=0.121 Sum_probs=55.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCccee---eccc-----hhhhhcc--------c-------chhHH------
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYF---MQNI-----RDESEKV--------G-------GLANI------ 232 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~---~~~~-----~~~~~~~--------~-------~l~~~------ 232 (664)
...|.|+|-.|-||||.|..++-+...+=-.+.+ +..- ....... + .-.+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~ 101 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAR 101 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHH
Confidence 4689999999999999999888773332211111 1100 0000000 0 00011
Q ss_pred -hHHHHHHHhcC-ceEEEEEecCCCHH-----HHHHHhccCCCCCCCcEEEEEeCCH
Q 006018 233 -HLNFERRRLSR-MKVLIVFYDLTDLK-----QIDLLIGRLDGFVPGSRVIITTRDV 282 (664)
Q Consensus 233 -~l~~~~~~L~~-~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IliTtR~~ 282 (664)
-++..++.+.. +--|+|||.+...- ..+.+...+....++..||+|-|+.
T Consensus 102 ~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 102 EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 13455556555 44599999984322 1333444444445677999999975
No 360
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.12 E-value=0.25 Score=46.37 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=23.7
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...++.|.|.+|.||||+|+.+.....
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998764
No 361
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.10 E-value=0.057 Score=62.05 Aligned_cols=50 Identities=26% Similarity=0.227 Sum_probs=39.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
....++|+...++++.+.+..-......|.|.|..|+|||++|+.+.+.-
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 34579999999988876665333344578999999999999999998763
No 362
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.09 E-value=0.091 Score=50.69 Aligned_cols=107 Identities=16% Similarity=0.114 Sum_probs=55.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh-hccCCcceeec--------cchhhhhcccch------hHHhHHHHHHH--hcCc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI-SSHFEGSYFMQ--------NIRDESEKVGGL------ANIHLNFERRR--LSRM 244 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~--------~~~~~~~~~~~l------~~~~l~~~~~~--L~~~ 244 (664)
.+.+.|+|+.|.||||+.+.+.... ..+-...+|.. .+.........+ -..++..+... +...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~ 108 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR 108 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence 4789999999999999999987431 11111111111 110000000111 11133333332 3467
Q ss_pred eEEEEEecCCC---HHH----HHHHhccCCCC-CCCcEEEEEeCCHHHHHhh
Q 006018 245 KVLIVFYDLTD---LKQ----IDLLIGRLDGF-VPGSRVIITTRDVQLLKNH 288 (664)
Q Consensus 245 ~~LlVlDdv~~---~~~----~~~l~~~~~~~-~~gs~IliTtR~~~~~~~~ 288 (664)
+.|++||.... ..+ ...+...+... ..+..+|+||-+.+.....
T Consensus 109 ~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 109 RSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 89999999853 111 12223333222 1235799999988877654
No 363
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.05 E-value=0.14 Score=48.88 Aligned_cols=106 Identities=13% Similarity=0.013 Sum_probs=54.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH-hhcc---C-Cc----ceeeccchhhhhcccchh------HHhHHHHHHH--hcCc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN-ISSH---F-EG----SYFMQNIRDESEKVGGLA------NIHLNFERRR--LSRM 244 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~-~~~~---f-~~----~~~~~~~~~~~~~~~~l~------~~~l~~~~~~--L~~~ 244 (664)
.++++|.|+.|.||||+.+.++.- +..+ | +. .-..+.+.........+. ..++..+... +..+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~~~~ 108 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDYADG 108 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999987643 1111 1 00 000011100000000000 1122222222 2356
Q ss_pred eEEEEEecCC---CHHH----HHHHhccCCCCCCCcEEEEEeCCHHHHHhhc
Q 006018 245 KVLIVFYDLT---DLKQ----IDLLIGRLDGFVPGSRVIITTRDVQLLKNHR 289 (664)
Q Consensus 245 ~~LlVlDdv~---~~~~----~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~ 289 (664)
+-|+++|... +..+ ...+...+. ..|+.+|++|-+.+++....
T Consensus 109 ~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 109 DSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 8899999973 2222 122333332 23779999999988877654
No 364
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.04 E-value=0.017 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
+|.|.|++|+||||+|+.+++++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998875
No 365
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.04 E-value=0.032 Score=52.08 Aligned_cols=27 Identities=41% Similarity=0.438 Sum_probs=23.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..+|+|.|++|+||||+|+.++.....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999988654
No 366
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.03 E-value=0.02 Score=51.01 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.3
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhc
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
+|.|.|++|.||||+|+.++++..-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6899999999999999999998543
No 367
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.02 E-value=0.075 Score=51.87 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=35.1
Q ss_pred HHHHHhcCceEEEEEecC----CC--HHHHHHHhccCCCCCCCcEEEEEeCCHHHHHhh
Q 006018 236 FERRRLSRMKVLIVFYDL----TD--LKQIDLLIGRLDGFVPGSRVIITTRDVQLLKNH 288 (664)
Q Consensus 236 ~~~~~L~~~~~LlVlDdv----~~--~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~ 288 (664)
.+.+.|.+++=|++||.- |. ...+-.++..+.. .|+.||++|-|-......
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHhh
Confidence 566778888999999983 32 2334455555543 288999999987766554
No 368
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.00 E-value=0.019 Score=53.93 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998874
No 369
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.99 E-value=0.05 Score=57.99 Aligned_cols=31 Identities=29% Similarity=0.606 Sum_probs=25.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEG 212 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~ 212 (664)
-..++|.|.+|+|||||+..++.....+.+.
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~ 174 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGG 174 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCC
Confidence 4578999999999999999998876655433
No 370
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.98 E-value=0.027 Score=52.78 Aligned_cols=25 Identities=40% Similarity=0.555 Sum_probs=22.2
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhc
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
+|+|.|.+|+||||||+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988653
No 371
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.0012 Score=63.68 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=52.0
Q ss_pred CCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccc--cccCCCCCCEE
Q 006018 532 LSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS--SMKQLSKLSDL 609 (664)
Q Consensus 532 l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~--~i~~L~~L~~L 609 (664)
+.+.+.|++.+|. +..+. ....++.|++|.|+-|++...- .+..+++|+.|+|..|.|..+.. .+.+|++|+.|
T Consensus 18 l~~vkKLNcwg~~-L~DIs-ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS-ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCC-ccHHH-HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3445556666543 33333 3445777777777777643322 35667778888888877775542 46778888888
Q ss_pred eecCCCCCC
Q 006018 610 RLQNCKRLQ 618 (664)
Q Consensus 610 ~L~~~~~l~ 618 (664)
+|..|+=.+
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 887765433
No 372
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.95 E-value=0.15 Score=48.33 Aligned_cols=94 Identities=18% Similarity=0.154 Sum_probs=54.7
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhcc---CC-cceeeccch-hhhhcccchhHHh--------------HHHHHHHhcCc
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISSH---FE-GSYFMQNIR-DESEKVGGLANIH--------------LNFERRRLSRM 244 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~~---f~-~~~~~~~~~-~~~~~~~~l~~~~--------------l~~~~~~L~~~ 244 (664)
-..|.|++|+|||||.+.+++-++.. |. ..+-+.+-+ +......+....+ ...+...-...
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 37799999999999999999875544 32 222222222 2221111111111 01222222335
Q ss_pred eEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeC
Q 006018 245 KVLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITTR 280 (664)
Q Consensus 245 ~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTtR 280 (664)
+=++|+|.+...++...+...+ ..|.+++.|.-
T Consensus 219 PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaH 251 (308)
T COG3854 219 PEVIIVDEIGTEEDALAILTAL---HAGVKLITTAH 251 (308)
T ss_pred CcEEEEeccccHHHHHHHHHHH---hcCcEEEEeec
Confidence 7799999999888777776654 45777766654
No 373
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.94 E-value=0.23 Score=46.09 Aligned_cols=105 Identities=19% Similarity=0.290 Sum_probs=56.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeecc--chhh----h-hccc-----------c-----hhHHh--HHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQN--IRDE----S-EKVG-----------G-----LANIH--LNF 236 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~--~~~~----~-~~~~-----------~-----l~~~~--l~~ 236 (664)
-.+++|.|..|.|||||.+.++.-... ..+.+++.. +... . ...+ . +..-+ .-.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~ 106 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIA 106 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHH
Confidence 358999999999999999998875322 233333321 1000 0 0000 0 00011 113
Q ss_pred HHHHhcCceEEEEEecCCC---HHHHHHHhccCCCCCCCcEEEEEeCCHHHHHh
Q 006018 237 ERRRLSRMKVLIVFYDLTD---LKQIDLLIGRLDGFVPGSRVIITTRDVQLLKN 287 (664)
Q Consensus 237 ~~~~L~~~~~LlVlDdv~~---~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~ 287 (664)
+...+..++-++++|+-.. ....+.+...+.....+..||++|.+.+....
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 4555667788999999642 22222222222222235678888888776654
No 374
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.91 E-value=0.021 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
+|.|.|.+|+||||+|+.++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 375
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.90 E-value=0.03 Score=58.64 Aligned_cols=52 Identities=17% Similarity=0.253 Sum_probs=38.7
Q ss_pred CCCceeehhhHHHHHhhhcC---------CC---CcceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 158 KDQLVGVESIIKEIESQLLS---------GS---TEFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~---------~~---~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
...++|.+..++.+...+.. +. .....|.++|++|+|||+||+.++..+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 34688999888888766632 00 113678999999999999999999886443
No 376
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.88 E-value=0.19 Score=51.96 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCCcceEEEEecCCCCChHHHHHHHHHH
Q 006018 178 GSTEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 178 ~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
+-+-...|+|+|+.||||+||.+.+.-.
T Consensus 609 GiDmdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 609 GIDMDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cccccceeEEECCCCccHHHHHHHHhcC
Confidence 3334567999999999999999987744
No 377
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.88 E-value=0.021 Score=51.64 Aligned_cols=20 Identities=35% Similarity=0.587 Sum_probs=18.5
Q ss_pred EEEEecCCCCChHHHHHHHH
Q 006018 184 TVGIWGIGGIGKTTIASAIY 203 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~ 203 (664)
.|+|.|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 378
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.87 E-value=0.021 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.4
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36899999999999999998873
No 379
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.85 E-value=0.037 Score=57.46 Aligned_cols=54 Identities=30% Similarity=0.337 Sum_probs=41.8
Q ss_pred CCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 159 DQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
..++|.++.+..+...+..+ +.+.+.|.+|+|||+||+.++..+...|-.+.+-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t 77 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRIQCT 77 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecC
Confidence 44899998888876666544 3588999999999999999999977555444443
No 380
>PRK13949 shikimate kinase; Provisional
Probab=94.85 E-value=0.025 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.|.|+|++|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998864
No 381
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=94.84 E-value=0.027 Score=52.03 Aligned_cols=45 Identities=31% Similarity=0.348 Sum_probs=32.6
Q ss_pred ceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH
Q 006018 161 LVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
+||.+..++++.+.+..-......|.|+|..|+||+.+|+.+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888877766543333456889999999999999999884
No 382
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.84 E-value=0.045 Score=55.66 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=39.5
Q ss_pred CCCCCCCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 152 LFPSDNKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 152 ~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
..|. ..+.++=..+....+...+..+ +.|.|.|.+|+||||+|+.++......|
T Consensus 39 ~~p~-~d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 39 HVPD-IDPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CCCC-CCCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 3344 4556666666667777777432 4699999999999999999999866544
No 383
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.81 E-value=0.2 Score=48.55 Aligned_cols=106 Identities=14% Similarity=0.011 Sum_probs=58.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHH-HhhccCCcceeecc-----chhhhhccc---------chhHHhHHHHHHHhc--Cc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYS-NISSHFEGSYFMQN-----IRDESEKVG---------GLANIHLNFERRRLS--RM 244 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~-~~~~~f~~~~~~~~-----~~~~~~~~~---------~l~~~~l~~~~~~L~--~~ 244 (664)
.+++.|.|+.|.||||+.+.+.- .+..+-...+|-.. ........+ +--..++..+...++ .+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 110 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTS 110 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCC
Confidence 46889999999999999998876 33222222222110 001111111 111224555555543 46
Q ss_pred eEEEEEecCCC----HHH---HHHHhccCCCCCCCcEEEEEeCCHHHHHhh
Q 006018 245 KVLIVFYDLTD----LKQ---IDLLIGRLDGFVPGSRVIITTRDVQLLKNH 288 (664)
Q Consensus 245 ~~LlVlDdv~~----~~~---~~~l~~~~~~~~~gs~IliTtR~~~~~~~~ 288 (664)
+-|+++|.... .+. ...+...+... .++.+|++|-+.++....
T Consensus 111 ~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 111 RSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 89999999621 221 12233333322 578999999998886544
No 384
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.81 E-value=0.17 Score=47.74 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=19.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
--|.|+|.+|+|||+|+..+...
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~ 29 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDG 29 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34779999999999999988763
No 385
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.81 E-value=0.042 Score=52.44 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=28.3
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
+...+|+|+|++|+||||||+.+.......-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 3456999999999999999999999865443334444
No 386
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.80 E-value=0.081 Score=55.15 Aligned_cols=96 Identities=20% Similarity=0.253 Sum_probs=59.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCccee-eccchhhhhccc---------chhHHh-HHHHHHHhcCceEEEEE
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYF-MQNIRDESEKVG---------GLANIH-LNFERRRLSRMKVLIVF 250 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~-~~~~~~~~~~~~---------~l~~~~-l~~~~~~L~~~~~LlVl 250 (664)
...|.|.|+.|.||||+++.+...+.......++ +++..+...... +..... -+.++..|+..+=.|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 3689999999999999999998877655444433 333222211000 100111 23567778889999999
Q ss_pred ecCCCHHHHHHHhccCCCCCCCcEEEEEeC
Q 006018 251 YDLTDLKQIDLLIGRLDGFVPGSRVIITTR 280 (664)
Q Consensus 251 Ddv~~~~~~~~l~~~~~~~~~gs~IliTtR 280 (664)
|.+.+.+.+....... ..|..|+.|.-
T Consensus 202 gEird~~~~~~~l~aa---~tGh~v~~T~H 228 (343)
T TIGR01420 202 GEMRDLETVELALTAA---ETGHLVFGTLH 228 (343)
T ss_pred eCCCCHHHHHHHHHHH---HcCCcEEEEEc
Confidence 9999888776544332 33544454544
No 387
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.80 E-value=0.021 Score=54.49 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
+|+|.|.+|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999988765
No 388
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.79 E-value=0.037 Score=52.56 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=23.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
++|.++|+.|+||||.+.+++.+...+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 689999999999999999888886655
No 389
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.78 E-value=0.13 Score=53.62 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=24.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
..+++++|+.|+||||++.+++.+....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 56899999999999999999998865443
No 390
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.78 E-value=0.088 Score=51.52 Aligned_cols=129 Identities=23% Similarity=0.223 Sum_probs=68.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec-cc------------hhhhhcccchhHH------------hH-
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ-NI------------RDESEKVGGLANI------------HL- 234 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~------------~~~~~~~~~l~~~------------~l- 234 (664)
...+++|+|..|+||||+++.+..-.......+.|-- ++ .+..... ++... +.
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~V-gl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKV-GLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHh-CCCHHHhhcCCcccCchhhh
Confidence 3458999999999999999999876443332222210 01 1111111 11111 11
Q ss_pred -HHHHHHhcCceEEEEEecCCCH------HHHHHHhccCCCCCCCcEEEEEeCCHHHHHhhcCCccccEEEecCCCHHHH
Q 006018 235 -NFERRRLSRMKVLIVFYDLTDL------KQIDLLIGRLDGFVPGSRVIITTRDVQLLKNHRGSRVGHVFEVKELSYNDS 307 (664)
Q Consensus 235 -~~~~~~L~~~~~LlVlDdv~~~------~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~~l~~L~~~ea 307 (664)
=.+.+.|.-++-++|.|..-+. .+.-.++..+.. ..|-..+..|-+-.+...+... ....|.-.-.....+
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isdr-i~VMy~G~iVE~g~~ 194 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISDR-IAVMYLGKIVEIGPT 194 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhccc-EEEEecCceeEecCH
Confidence 1556677788999999986432 222233333221 2355677778877777655421 222222233344445
Q ss_pred HHHHH
Q 006018 308 LTLFS 312 (664)
Q Consensus 308 ~~Lf~ 312 (664)
.++|.
T Consensus 195 ~~~~~ 199 (268)
T COG4608 195 EEVFS 199 (268)
T ss_pred HHHhh
Confidence 55553
No 391
>PRK06217 hypothetical protein; Validated
Probab=94.78 E-value=0.024 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.2
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.|.|.|.+|.||||+|+++.+..
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999885
No 392
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.75 E-value=0.046 Score=53.38 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=34.6
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC------Ccceeec
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF------EGSYFMQ 217 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 217 (664)
.|.++|..+-....++.|+|.+|+|||+||..++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44455544445567999999999999999999988755444 4456654
No 393
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.75 E-value=0.026 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEecCCCCChHHHHHHHHHH
Q 006018 184 TVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.|.|.|.+|.||||+|+.++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999998
No 394
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.74 E-value=0.049 Score=51.37 Aligned_cols=80 Identities=21% Similarity=0.214 Sum_probs=47.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc---ch----------hHHh-HHHHHHHhcCceEE
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG---GL----------ANIH-LNFERRRLSRMKVL 247 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~---~l----------~~~~-l~~~~~~L~~~~~L 247 (664)
...++|.|..|.||||+++.+...+... ...+.+++..+...... .+ .... .+.++..++..+-.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~ 103 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDR 103 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCE
Confidence 4589999999999999999988765432 23333333222211000 00 0011 23455566667778
Q ss_pred EEEecCCCHHHHHHH
Q 006018 248 IVFYDLTDLKQIDLL 262 (664)
Q Consensus 248 lVlDdv~~~~~~~~l 262 (664)
++++.+.+.+.++.+
T Consensus 104 i~igEir~~ea~~~~ 118 (186)
T cd01130 104 IIVGEVRGGEALDLL 118 (186)
T ss_pred EEEEccCcHHHHHHH
Confidence 888888887765544
No 395
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.74 E-value=0.023 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=22.4
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
.|+|+|+.|+|||||++.+++.....|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998754443
No 396
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.72 E-value=0.062 Score=54.12 Aligned_cols=117 Identities=21% Similarity=0.171 Sum_probs=65.1
Q ss_pred CCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc---ch--h--H
Q 006018 159 DQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG---GL--A--N 231 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~---~l--~--~ 231 (664)
+.+.-.....+++.++|...-...+.|.|.|..|.||||++..+...+...-...+-+++..+...... .+ . .
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~ 183 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDE 183 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTT
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCc
Confidence 334333334455555554322335789999999999999999998876655233334443333221111 11 0 1
Q ss_pred Hh-HHHHHHHhcCceEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEe
Q 006018 232 IH-LNFERRRLSRMKVLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITT 279 (664)
Q Consensus 232 ~~-l~~~~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTt 279 (664)
.. -+.++..|+..+=.++++.+.+.+.+..+. .. ..|..+-+||
T Consensus 184 ~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~-a~---~tGh~~~~tT 228 (270)
T PF00437_consen 184 ISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQ-AA---NTGHLGSLTT 228 (270)
T ss_dssp BSHHHHHHHHTTS--SEEEESCE-SCHHHHHHH-HH---HTT-EEEEEE
T ss_pred ccHHHHHHHHhcCCCCcccccccCCHhHHHHHH-hh---ccCCceeeee
Confidence 11 346677888888899999998887776633 32 3465662444
No 397
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.69 E-value=0.15 Score=51.97 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=51.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccC--Ccceeeccchhhhhccc---chhH---H-h-HHHHHHHhcCceEEEEEec
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHF--EGSYFMQNIRDESEKVG---GLAN---I-H-LNFERRRLSRMKVLIVFYD 252 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~---~l~~---~-~-l~~~~~~L~~~~~LlVlDd 252 (664)
+.+.|.|..|.||||++++++..+.... ..++-+++..+..-... .++. . . -+.++..|+..+=.||+..
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 4678999999999999999998875432 23344454444321110 1100 0 1 2466677777888888999
Q ss_pred CCCHHHHHHH
Q 006018 253 LTDLKQIDLL 262 (664)
Q Consensus 253 v~~~~~~~~l 262 (664)
+.+.+.++.+
T Consensus 213 iR~~ea~~~l 222 (299)
T TIGR02782 213 VRGGEALDLL 222 (299)
T ss_pred cCCHHHHHHH
Confidence 9887766543
No 398
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.69 E-value=0.042 Score=54.96 Aligned_cols=45 Identities=24% Similarity=0.144 Sum_probs=36.5
Q ss_pred hhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 173 SQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 173 ~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
+.|..+-...+++.|+|.+|+|||++|.++......+...++|+.
T Consensus 14 ~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 14 EILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 333333356789999999999999999999999888888888875
No 399
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.68 E-value=0.1 Score=55.52 Aligned_cols=33 Identities=27% Similarity=0.531 Sum_probs=26.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcce
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSY 214 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 214 (664)
-..++|.|.+|+|||+|+..++.....+...++
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~ 175 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYS 175 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeE
Confidence 457899999999999999999887655434333
No 400
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.68 E-value=0.027 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEecCCCCChHHHHHHHHHHh
Q 006018 185 VGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
|.|+|++|.||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998875
No 401
>PRK14974 cell division protein FtsY; Provisional
Probab=94.68 E-value=0.31 Score=50.28 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=24.4
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
...+|+++|++|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999998888776543
No 402
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.67 E-value=0.027 Score=49.32 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+-|.|.|.||+||||+|.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3458899999999999999999653
No 403
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.67 E-value=0.025 Score=54.89 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.7
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
+|+|.|.+|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998765
No 404
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.67 E-value=0.04 Score=50.80 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=24.7
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..++++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4578999999999999999999988654
No 405
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.65 E-value=0.28 Score=50.85 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=24.4
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
..++++++|+.|+||||++..++.....+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~ 233 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ 233 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999998775443
No 406
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.64 E-value=0.1 Score=55.85 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=24.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
-..++|.|.+|+|||||+..+++....+
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~ 170 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ 170 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh
Confidence 4579999999999999999998886643
No 407
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.64 E-value=0.03 Score=52.45 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+++|.|++|+|||||++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999988753
No 408
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.63 E-value=0.031 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.6
Q ss_pred EEEecCCCCChHHHHHHHHHHhhc
Q 006018 185 VGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
|.|.|.+|+|||||++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999988654
No 409
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.61 E-value=0.13 Score=54.49 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.7
Q ss_pred eEEEEecCCCCChHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~ 204 (664)
..++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4799999999999999998764
No 410
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.59 E-value=0.054 Score=53.42 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=32.4
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
.++...+.....+..+|+|.|.||+|||||..++..++..+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 45555665555678899999999999999999988876544
No 411
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.58 E-value=0.031 Score=52.40 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..+|+|-||=|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999865
No 412
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.58 E-value=0.037 Score=49.39 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
++|.|+|..|+|||||++.+.+....
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~ 26 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR 26 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH
Confidence 47999999999999999999998664
No 413
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.57 E-value=0.29 Score=45.49 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.7
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
++.+.|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999998876554
No 414
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.57 E-value=0.09 Score=51.82 Aligned_cols=93 Identities=22% Similarity=0.336 Sum_probs=54.7
Q ss_pred hhhHHHHHhhhcCCC-CcceEEEEecCCCCChHHHHHHHHHHhhc---------------cCCcceeeccchhhhhcccc
Q 006018 165 ESIIKEIESQLLSGS-TEFNTVGIWGIGGIGKTTIASAIYSNISS---------------HFEGSYFMQNIRDESEKVGG 228 (664)
Q Consensus 165 ~~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~~~~~~~~---------------~f~~~~~~~~~~~~~~~~~~ 228 (664)
+..+..|.+.+..+. .+.-+++.+|.+|+||.-.|+.+++.... +|+..-.+++.++.
T Consensus 92 ~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk~e------ 165 (344)
T KOG2170|consen 92 QLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYKEE------ 165 (344)
T ss_pred HHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHHHH------
Confidence 344555556555443 44668899999999999999998876321 22221111111111
Q ss_pred hhHHhHHHHHHHh-cCceEEEEEecCCCH--HHHHHHhccCC
Q 006018 229 LANIHLNFERRRL-SRMKVLIVFYDLTDL--KQIDLLIGRLD 267 (664)
Q Consensus 229 l~~~~l~~~~~~L-~~~~~LlVlDdv~~~--~~~~~l~~~~~ 267 (664)
-.+.+++.+ .-++-|+|+|+++.+ .-++.+.+.+.
T Consensus 166 ----L~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 166 ----LKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred ----HHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 112333333 337899999999865 34666666654
No 415
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.56 E-value=0.16 Score=58.65 Aligned_cols=175 Identities=16% Similarity=0.103 Sum_probs=83.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH-hhcc---C-Ccc--eeeccchhhhhcccc---h----h--HHhHHHHHHHhc--C
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN-ISSH---F-EGS--YFMQNIRDESEKVGG---L----A--NIHLNFERRRLS--R 243 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~-~~~~---f-~~~--~~~~~~~~~~~~~~~---l----~--~~~l~~~~~~L~--~ 243 (664)
..+++|.|+.|.||||+.+.+.-. +..+ | +.. ..+..+.......+. + . ..++..+...+. .
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~ 401 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTT 401 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcC
Confidence 468999999999999999988755 1111 1 100 001001111111110 0 0 002223333333 4
Q ss_pred ceEEEEEecCCC---HHHHH----HHhccCCCCCCCcEEEEEeCCHHHHHhhcCCccccEEEecCCCHHHHHHHHHHhhh
Q 006018 244 MKVLIVFYDLTD---LKQID----LLIGRLDGFVPGSRVIITTRDVQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 244 ~~~LlVlDdv~~---~~~~~----~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
.+-|+++|.... ..... .+...+. ..|+.+|+||-...+............+.+. ++.+ ... +..+.
T Consensus 402 ~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~-p~Ykl- 475 (771)
T TIGR01069 402 ENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS-PTYKL- 475 (771)
T ss_pred CCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-eEEEE-
Confidence 789999999853 22222 2233332 3578999999988775432211011111111 1111 100 11111
Q ss_pred CCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcCCCCHHHHHHHHHHhh
Q 006018 317 GQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLKGMSEEEWESAVNKLK 366 (664)
Q Consensus 317 ~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~~~~~~~w~~~l~~l~ 366 (664)
....+. ...+-.|++.+ |+|-.+..-|..+.+....++...+.++.
T Consensus 476 ~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 476 LKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred CCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111222 13355666665 78888887777775544445555555543
No 416
>PRK05439 pantothenate kinase; Provisional
Probab=94.55 E-value=0.041 Score=55.80 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=24.6
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
....+|+|.|.+|+||||+|+.+......
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44678999999999999999988876543
No 417
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.55 E-value=0.035 Score=52.67 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999873
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.53 E-value=0.28 Score=47.44 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=53.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh-hccCCcc--------eeeccc------hhhhhcccchhHHhHHHHHHHhc--Cce
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI-SSHFEGS--------YFMQNI------RDESEKVGGLANIHLNFERRRLS--RMK 245 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~-~~~f~~~--------~~~~~~------~~~~~~~~~l~~~~l~~~~~~L~--~~~ 245 (664)
++++|.|+.|.||||+.+.+..-. -.+-... .++..+ .+...........++..+...+. .++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~ 110 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER 110 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999885321 1110000 000000 01000000111112334444443 578
Q ss_pred EEEEEecC---CC-HHH---HHHHhccCCCCCCCcEEEEEeCCHHHHHhh
Q 006018 246 VLIVFYDL---TD-LKQ---IDLLIGRLDGFVPGSRVIITTRDVQLLKNH 288 (664)
Q Consensus 246 ~LlVlDdv---~~-~~~---~~~l~~~~~~~~~gs~IliTtR~~~~~~~~ 288 (664)
-|+++|.. -+ .+. ...+...+.. ..++.+|++|-+.++....
T Consensus 111 ~llllDEp~~gt~~lD~~~~~~~il~~l~~-~~~~~vi~~TH~~~l~~l~ 159 (216)
T cd03284 111 SLVLLDEIGRGTSTYDGLSIAWAIVEYLHE-KIGAKTLFATHYHELTELE 159 (216)
T ss_pred eEEEEecCCCCCChHHHHHHHHHHHHHHHh-ccCCcEEEEeCcHHHHHHh
Confidence 99999997 33 221 1223333322 1367889999987765433
No 419
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=0.56 Score=47.12 Aligned_cols=127 Identities=8% Similarity=-0.029 Sum_probs=71.1
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-------------CCcceeeccchhhhhcccchhHHhHH
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-------------FEGSYFMQNIRDESEKVGGLANIHLN 235 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-------------f~~~~~~~~~~~~~~~~~~l~~~~l~ 235 (664)
+++...+..+ .-.....++|+.|+||+++|.+++..+-.. .+...++..... ...+.-.+.+
T Consensus 7 ~~L~~~i~~~-rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~----~~~I~idqiR 81 (290)
T PRK05917 7 EALIQRVRDQ-KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK----GRLHSIETPR 81 (290)
T ss_pred HHHHHHHHcC-CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC----CCcCcHHHHH
Confidence 4455555432 224567799999999999999999874321 111222210000 0011112233
Q ss_pred HHHHHh-----cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHHH-HHhhcCCccccEEEecCC
Q 006018 236 FERRRL-----SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQL-LKNHRGSRVGHVFEVKEL 302 (664)
Q Consensus 236 ~~~~~L-----~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~~-~~~~~~~~~~~~~~l~~L 302 (664)
.+.+.+ .++.-++|+|+++.. +....++..+....+++.+|++|.+.+. .....+ ....+.+.++
T Consensus 82 ~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~S--Rcq~~~~~~~ 154 (290)
T PRK05917 82 AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRS--RSLSIHIPME 154 (290)
T ss_pred HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHh--cceEEEccch
Confidence 344443 244568888998754 5678888877766777777777776433 322221 3456666654
No 420
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.51 E-value=0.045 Score=58.16 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=34.4
Q ss_pred CceeehhhHHHHHhhhc-------CCC-------CcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 160 QLVGVESIIKEIESQLL-------SGS-------TEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~-------~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.+||.+..++.+...+. ... .....|.++|++|+|||+||+.++.....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 47888887777644331 100 11356899999999999999999987543
No 421
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.48 E-value=0.066 Score=52.69 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=34.8
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
..|.++|..+=....++.|.|.+|+|||++|.++......+-+.++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455555444455679999999999999999998776444445566654
No 422
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.47 E-value=0.2 Score=51.06 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=36.0
Q ss_pred HHHHHhhhc-CCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 168 IKEIESQLL-SGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 168 ~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
...|...|. .+-+..+++-|+|..|+||||||..+.......-..++|++
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 344555554 22244678999999999999999999988766666677775
No 423
>PRK13948 shikimate kinase; Provisional
Probab=94.47 E-value=0.034 Score=52.00 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=24.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
....|.++|+.|+||||+++.++++...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3567899999999999999999988643
No 424
>PRK13946 shikimate kinase; Provisional
Probab=94.46 E-value=0.033 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
+.|.+.|++|+||||+|+.++++..
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999999863
No 425
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.46 E-value=0.054 Score=53.24 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=28.1
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.|...|..+-....++.|+|.+|+|||+||.+++...
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 3445554444456789999999999999999998653
No 426
>PRK14530 adenylate kinase; Provisional
Probab=94.43 E-value=0.034 Score=53.85 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
+.|.|.|++|+||||+|+.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998875
No 427
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.42 E-value=0.2 Score=56.66 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
-..++|+|..|.|||||++.+...+
T Consensus 376 G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 376 GQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999887654
No 428
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=94.41 E-value=0.26 Score=50.72 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=36.0
Q ss_pred ccEEEecCCCHHHHHHHHHHhhhCCCCC-CccHHHHHHHHHHHhcCCchhHHHHhhhc
Q 006018 294 GHVFEVKELSYNDSLTLFSRNAFGQNHP-AAGFLELSNIVIKYANGVPLALQVLGSYL 350 (664)
Q Consensus 294 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~~~~~~i~~~~~glPLal~~~a~~l 350 (664)
..+++++..+.+|+.++...+.-..--. ...-++.-+++.-..+|+|--++-++.++
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHHHHHHhc
Confidence 4568899999999998876654211000 00113445677777899997777666654
No 429
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.41 E-value=0.055 Score=54.00 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=28.6
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
..-.++.|.|.+|+|||++|.+++.....+-+.++|+.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34678999999999999999998776544434555554
No 430
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.39 E-value=0.041 Score=52.86 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=23.9
Q ss_pred CCCCcceEEEEecCCCCChHHHHHHHHHH
Q 006018 177 SGSTEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 177 ~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
......+.|.|+|++|+|||||++.+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34455788999999999999999998754
No 431
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.37 E-value=0.064 Score=53.65 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=29.5
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhccCCccee
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYF 215 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 215 (664)
.+..+|.|.|.+|.|||||+..+.+.........+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 457899999999999999999999987666544443
No 432
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.32 E-value=0.042 Score=51.70 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=29.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
.+++.|+|+.|+|||||++.+.......|...+..
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~ 36 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH 36 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceee
Confidence 46899999999999999999999988878544443
No 433
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.29 E-value=0.041 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..|.|+|+.|.||||+|+.++....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998753
No 434
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.28 E-value=0.27 Score=47.43 Aligned_cols=107 Identities=15% Similarity=0.094 Sum_probs=57.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh-h---ccC------Ccc----eeec-cchhhhhcccchhHHhHHHHHHHhc--Cc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI-S---SHF------EGS----YFMQ-NIRDESEKVGGLANIHLNFERRRLS--RM 244 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~-~---~~f------~~~----~~~~-~~~~~~~~~~~l~~~~l~~~~~~L~--~~ 244 (664)
.+++.|.|+.|.||||+.+.+.-.+ - ..| ... ++.. ...+......+--..|+..+...++ .+
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~ 109 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRHATP 109 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHhCCC
Confidence 4688999999999999999876541 1 111 111 1110 0011111111111224455555544 57
Q ss_pred eEEEEEecCC---CHHH----HHHHhccCCCCCCCcEEEEEeCCHHHHHhhc
Q 006018 245 KVLIVFYDLT---DLKQ----IDLLIGRLDGFVPGSRVIITTRDVQLLKNHR 289 (664)
Q Consensus 245 ~~LlVlDdv~---~~~~----~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~ 289 (664)
+-|++||.+. +..+ ...+...+.. ..++.+|++|-+.++.....
T Consensus 110 ~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~-~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 110 DSLVILDELGRGTSTHDGYAIAHAVLEYLVK-KVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CeEEEEecccCCCCchHHHHHHHHHHHHHHH-hcCCcEEEEeccHHHHHHhh
Confidence 8999999983 2222 1221223321 23789999999988876554
No 435
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.27 E-value=0.032 Score=51.37 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.8
Q ss_pred EEEecCCCCChHHHHHHHHHHh
Q 006018 185 VGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999875
No 436
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.26 E-value=0.047 Score=51.52 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH
Q 006018 159 DQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+++|.+.....+.-.... ..-+.+.|.+|+|||++|+.+..-
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHHh
Confidence 4678888888777655532 357899999999999999988753
No 437
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.22 E-value=0.067 Score=48.57 Aligned_cols=35 Identities=26% Similarity=0.442 Sum_probs=28.4
Q ss_pred hhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH
Q 006018 166 SIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
+.+++|...|. + +++++.|..|+|||||...+...
T Consensus 24 ~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45677777773 2 68999999999999999988765
No 438
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.21 E-value=0.78 Score=47.01 Aligned_cols=48 Identities=21% Similarity=0.112 Sum_probs=33.2
Q ss_pred EEEecCCCHHHHHHHHHHhhhCCCCCC-ccHHHHHHHHHHHhcCCchhH
Q 006018 296 VFEVKELSYNDSLTLFSRNAFGQNHPA-AGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 296 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~glPLal 343 (664)
.+++++++.+|+..++..+.-.+--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988874332222 233445556666669999654
No 439
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.20 E-value=0.053 Score=52.44 Aligned_cols=35 Identities=23% Similarity=0.329 Sum_probs=28.2
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhccCCcce
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSY 214 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 214 (664)
+....|.++||+|.||||..+.++.+...++....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppY 51 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPY 51 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCe
Confidence 34567889999999999999999998777665433
No 440
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.18 E-value=0.072 Score=54.71 Aligned_cols=40 Identities=28% Similarity=0.439 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.++.+.+........+|+|.|.+|+|||||+..+...+..
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3454444433355789999999999999999998877654
No 441
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.16 E-value=0.038 Score=51.80 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999998863
No 442
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.15 E-value=0.087 Score=51.53 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=33.2
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
.|.+.|..+=..-..+.|.|.+|+|||+||..++......-..++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 444444333344578999999999999999988766444445556664
No 443
>PRK13975 thymidylate kinase; Provisional
Probab=94.10 E-value=0.048 Score=51.91 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..|.|.|+.|+||||+|+.+++++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998754
No 444
>PRK15453 phosphoribulokinase; Provisional
Probab=94.10 E-value=0.071 Score=52.87 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.7
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...+|+|.|.+|+||||+|+.+++.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987654
No 445
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.08 E-value=0.15 Score=52.29 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=50.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc---ch--h-------HHh-HHHHHHHhcCceEEE
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG---GL--A-------NIH-LNFERRRLSRMKVLI 248 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~---~l--~-------~~~-l~~~~~~L~~~~~Ll 248 (664)
...++|.|..|.|||||++.+...+.... ..+.+++..+...... .+ + ... -+.+...|+..+-.+
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 46899999999999999999887654322 2333443333211100 00 0 011 235566778888889
Q ss_pred EEecCCCHHHHHHH
Q 006018 249 VFYDLTDLKQIDLL 262 (664)
Q Consensus 249 VlDdv~~~~~~~~l 262 (664)
++|.+...+.++.+
T Consensus 223 i~gE~r~~e~~~~l 236 (308)
T TIGR02788 223 ILGELRGDEAFDFI 236 (308)
T ss_pred EEeccCCHHHHHHH
Confidence 99999987766543
No 446
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.06 E-value=0.34 Score=46.23 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=19.9
Q ss_pred eEEEEecCCCCChHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIY 203 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~ 203 (664)
++++|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999987
No 447
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.05 E-value=0.18 Score=57.37 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=20.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-..|+|+|..|+|||||++.+..-
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999987654
No 448
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.04 E-value=0.73 Score=48.51 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=41.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHh-cCceEEEEEecCCC
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRL-SRMKVLIVFYDLTD 255 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L-~~~~~LlVlDdv~~ 255 (664)
++-+.+.|++|.|||.||++++-.....| |-........+..+..+.-+..+.+.- ...+.++++|+++.
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~atf----f~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEids 256 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESGATF----FNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDS 256 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhcceE----eeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHH
Confidence 55677999999999999999998854433 211122222222222222233333222 34688899999864
No 449
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=93.94 E-value=0.27 Score=55.58 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-..++|+|..|.|||||++.+...
T Consensus 361 G~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 361 GQTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999988754
No 450
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.92 E-value=0.078 Score=53.16 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=25.0
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
...++++++|++|+||||++..++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 346799999999999999999998876544
No 451
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.92 E-value=0.053 Score=46.69 Aligned_cols=21 Identities=24% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEecCCCCChHHHHHHHHHH
Q 006018 185 VGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~ 205 (664)
|.|+|..|+|||||.+.+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999998876
No 452
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=93.91 E-value=0.051 Score=50.45 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.|.|+|++|+||||+|+.++++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998853
No 453
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.90 E-value=0.026 Score=32.40 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=8.3
Q ss_pred cccccccccccccccccc
Q 006018 512 IEDLDLKETAIEELPSSI 529 (664)
Q Consensus 512 L~~L~l~~~~i~~lp~~~ 529 (664)
|++|++++|.++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 344444444444444443
No 454
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.90 E-value=0.054 Score=51.98 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|+|+|+.|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999999874
No 455
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.89 E-value=0.074 Score=49.17 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=32.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeecc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQN 218 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 218 (664)
...|++-|++|.|||+|..+.+++.+++|...+.--+
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~D 49 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGD 49 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEece
Confidence 4789999999999999999999999988887666543
No 456
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.86 E-value=0.39 Score=52.73 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=37.1
Q ss_pred HHHHhcCceEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCCHHHHHhhcCCccccEEEecC
Q 006018 237 ERRRLSRMKVLIVFYDLT---DLKQIDLLIGRLDGFVPGSRVIITTRDVQLLKNHRGSRVGHVFEVKE 301 (664)
Q Consensus 237 ~~~~L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~~l~~ 301 (664)
+...+...+-+||||.-- +.+..+.+...+..+ +| .||+.|-++....... ..++.+++
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f-~G-tvl~VSHDr~Fl~~va----~~i~~~~~ 511 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF-EG-TVLLVSHDRYFLDRVA----TRIWLVED 511 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC-CC-eEEEEeCCHHHHHhhc----ceEEEEcC
Confidence 344556678899999753 233444444444332 24 5888899998887764 56677664
No 457
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.86 E-value=0.063 Score=50.54 Aligned_cols=32 Identities=25% Similarity=0.161 Sum_probs=24.6
Q ss_pred EEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 185 VGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
+.|.|.+|+|||+||.+++......=..+.|+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~ 33 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYV 33 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 67999999999999999888754443445554
No 458
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.84 E-value=0.076 Score=56.20 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=35.3
Q ss_pred CCceeehhhHHHHHhhh-------cC---CC--C----cceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 159 DQLVGVESIIKEIESQL-------LS---GS--T----EFNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L-------~~---~~--~----~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
...||.++.++.+...+ .. .. . ....|.++|++|+|||++|+.++......|
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 34678877777765433 11 00 1 125789999999999999999998764333
No 459
>PHA02774 E1; Provisional
Probab=93.82 E-value=0.17 Score=55.09 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=30.0
Q ss_pred hHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 167 IIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 167 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
-+..++.++. +......+.|+|++|.|||.+|..+.+-..
T Consensus 420 fl~~lk~~l~-~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 420 FLTALKDFLK-GIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred HHHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455666664 223456899999999999999999998753
No 460
>PRK14529 adenylate kinase; Provisional
Probab=93.80 E-value=0.23 Score=47.95 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.8
Q ss_pred EEEecCCCCChHHHHHHHHHHhh
Q 006018 185 VGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
|.|.|++|+||||+|+.++..+.
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78899999999999999998754
No 461
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.78 E-value=0.11 Score=53.34 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=25.0
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
...+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999998876543
No 462
>PRK05973 replicative DNA helicase; Provisional
Probab=93.78 E-value=0.098 Score=50.96 Aligned_cols=36 Identities=17% Similarity=0.061 Sum_probs=27.6
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
...++.|.|.+|+|||++|.+++.....+-..++|+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyf 98 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFF 98 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 345899999999999999999988754444445554
No 463
>PRK04182 cytidylate kinase; Provisional
Probab=93.77 E-value=0.055 Score=50.58 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.7
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
+|+|.|+.|+||||+|+.++++..
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998753
No 464
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.77 E-value=0.24 Score=54.04 Aligned_cols=101 Identities=17% Similarity=0.211 Sum_probs=60.3
Q ss_pred eeehh-hHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc-cc--chhH---Hh-
Q 006018 162 VGVES-IIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK-VG--GLAN---IH- 233 (664)
Q Consensus 162 vGr~~-~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~-~~--~l~~---~~- 233 (664)
.|... .++.+..++.. ...+|.|.|+.|.||||+...+.+.+...-..++-+++-.+..-. .. .+.. ..
T Consensus 224 Lg~~~~~~~~l~~~~~~---~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f 300 (486)
T TIGR02533 224 LGMSPELLSRFERLIRR---PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTF 300 (486)
T ss_pred cCCCHHHHHHHHHHHhc---CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccH
Confidence 34433 33445555532 235899999999999999998887764332223333332211100 00 0111 11
Q ss_pred HHHHHHHhcCceEEEEEecCCCHHHHHHHhcc
Q 006018 234 LNFERRRLSRMKVLIVFYDLTDLKQIDLLIGR 265 (664)
Q Consensus 234 l~~~~~~L~~~~~LlVlDdv~~~~~~~~l~~~ 265 (664)
-+.++..|+..+=.|++.++.+.+........
T Consensus 301 ~~~lr~~LR~dPDvI~vGEiRd~eta~~a~~a 332 (486)
T TIGR02533 301 AAGLRAILRQDPDIIMVGEIRDLETAQIAIQA 332 (486)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHH
Confidence 34778888999999999999998876554433
No 465
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.76 E-value=0.044 Score=50.42 Aligned_cols=21 Identities=33% Similarity=0.351 Sum_probs=17.9
Q ss_pred EEEecCCCCChHHHHHHHHHH
Q 006018 185 VGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 185 v~I~G~gGiGKTtLA~~~~~~ 205 (664)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 466
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.76 E-value=0.057 Score=59.01 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=42.7
Q ss_pred CCCCceeehhhHHHHHhhhcC---CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 157 NKDQLVGVESIIKEIESQLLS---GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
...+++--.+.++++..||.. +....+++.+.|++|+||||.++.+++... |+..-|.
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 445566667788899998864 223357899999999999999999998852 3444443
No 467
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.76 E-value=0.065 Score=48.08 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.++|.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 4789999999999999998777665
No 468
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.76 E-value=0.23 Score=49.25 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
-..++|.|-+|+|||+|+..+.+...
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~ 94 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAG 94 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhh
Confidence 35689999999999999999887743
No 469
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.74 E-value=0.058 Score=49.08 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
+++|+|+.|+|||||+.++...+..+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999987654
No 470
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=93.73 E-value=0.076 Score=53.12 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=28.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
++|+|+|.+|+|||||+..+...++.+. .+..+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5799999999999999999999988776 455554
No 471
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.73 E-value=0.44 Score=47.94 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
-.+++|+|..|.|||||++.++.-.
T Consensus 30 Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 30 GQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhc
Confidence 3489999999999999999987653
No 472
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.73 E-value=0.11 Score=51.11 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=33.9
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
..|.+.|..+-....++.|.|.+|+|||+||.+++.....+=..+.|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455555444455678999999999999999999766433434455554
No 473
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.72 E-value=0.069 Score=58.24 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=26.5
Q ss_pred hhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 174 QLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 174 ~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+....+...+|+|.|..|.||||||+.+...+
T Consensus 57 lL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 57 LLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 333344567899999999999999999998764
No 474
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=1 Score=46.44 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=24.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
.+-|..+|++|.|||..|++++.+-.-+|
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlDY 412 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLDY 412 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCce
Confidence 67799999999999999999998744333
No 475
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=93.70 E-value=0.09 Score=58.44 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=38.1
Q ss_pred CCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 159 DQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
+..+.|.+..+.|.+..........+|.|+|++|+||||+|+.++.+...
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34566666666666666544455668999999999999999999998754
No 476
>PRK14527 adenylate kinase; Provisional
Probab=93.68 E-value=0.065 Score=50.77 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.9
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
...+|.|.|++|.||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998774
No 477
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.66 E-value=0.056 Score=51.77 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=20.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~ 204 (664)
--+++|+|..|.|||||++.++-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999998874
No 478
>PF13245 AAA_19: Part of AAA domain
Probab=93.65 E-value=0.079 Score=41.59 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=17.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
+++.|.|.+|.|||+++......
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57788999999999666554444
No 479
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.65 E-value=0.19 Score=53.61 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=32.7
Q ss_pred HHHHHhcCceEEEEEecCC---CHHHHHHHhccCCCCCCCcEEEEEeCCHHHHHhhc
Q 006018 236 FERRRLSRMKVLIVFYDLT---DLKQIDLLIGRLDGFVPGSRVIITTRDVQLLKNHR 289 (664)
Q Consensus 236 ~~~~~L~~~~~LlVlDdv~---~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~ 289 (664)
.+.+.|-.++-|+.||+-- +.+....+-..+.....+ .++|++|..+.....+
T Consensus 231 aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vC 286 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVC 286 (614)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHh
Confidence 3445566778999999964 333333333333322222 6899999988876654
No 480
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.64 E-value=0.069 Score=53.78 Aligned_cols=28 Identities=25% Similarity=0.233 Sum_probs=23.2
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
+...+|||.|..|+||||+|+.+..-+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4467999999999999999987765544
No 481
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.63 E-value=0.082 Score=50.81 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=25.5
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.++++|+++|..|+|||||..++.+....
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~ 48 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD 48 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999999999887543
No 482
>PLN02200 adenylate kinase family protein
Probab=93.62 E-value=0.068 Score=52.32 Aligned_cols=25 Identities=24% Similarity=0.125 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|.|.|++|+||||+|+.+++.+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999998864
No 483
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.60 E-value=0.066 Score=43.92 Aligned_cols=25 Identities=32% Similarity=0.619 Sum_probs=21.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhc
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
++.+.|.+|+||||++..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999988655
No 484
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.60 E-value=0.1 Score=53.31 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=28.8
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.+.+.+........+|+|.|.+|+|||||+..+......
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344444434456789999999999999999998876433
No 485
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.60 E-value=0.17 Score=53.95 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=26.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhcc-CCcceee
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSH-FEGSYFM 216 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 216 (664)
-..++|.|.+|+|||+|+..+.+..... -+.++|.
T Consensus 138 GQr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~ 173 (449)
T TIGR03305 138 GGKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFC 173 (449)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEE
Confidence 4578999999999999999988875432 2444443
No 486
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=93.60 E-value=0.32 Score=54.94 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=21.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-..++|+|..|.|||||++.+..-
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl 392 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 457999999999999999988764
No 487
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.59 E-value=0.15 Score=53.28 Aligned_cols=84 Identities=18% Similarity=0.094 Sum_probs=52.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCC---cceeeccchhhhhcc-----cc-hhHH------h-HHHHHHHhcCce
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFE---GSYFMQNIRDESEKV-----GG-LANI------H-LNFERRRLSRMK 245 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~-----~~-l~~~------~-l~~~~~~L~~~~ 245 (664)
...|.|+|+.|.||||+++.+...+....+ .++.+++..+..... .. .|.. . -..++..|+..+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P 213 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP 213 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC
Confidence 469999999999999999999887654433 123333222211000 00 0110 1 235677888888
Q ss_pred EEEEEecCCCHHHHHHHhcc
Q 006018 246 VLIVFYDLTDLKQIDLLIGR 265 (664)
Q Consensus 246 ~LlVlDdv~~~~~~~~l~~~ 265 (664)
-.+++..+.+.+..+.....
T Consensus 214 d~i~vGEiRd~et~~~al~a 233 (358)
T TIGR02524 214 HAILVGEARDAETISAALEA 233 (358)
T ss_pred CEEeeeeeCCHHHHHHHHHH
Confidence 99999999888877644433
No 488
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.59 E-value=0.24 Score=51.91 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=53.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCC--cceeeccchhhhhcc-cc----hhHH------h-HHHHHHHhcCceEEE
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFE--GSYFMQNIRDESEKV-GG----LANI------H-LNFERRRLSRMKVLI 248 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~-~~----l~~~------~-l~~~~~~L~~~~~Ll 248 (664)
..|.|.|+.|.||||++..+++.+....+ .++-+++..+..-.. .. .+.+ . -+.++..|+..+=.|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 47889999999999999999887654332 233334332321100 00 1111 1 236677888889999
Q ss_pred EEecCCCHHHHHHHhcc
Q 006018 249 VFYDLTDLKQIDLLIGR 265 (664)
Q Consensus 249 VlDdv~~~~~~~~l~~~ 265 (664)
+++.+.+.+.++.....
T Consensus 230 ~vGEiRd~et~~~al~a 246 (372)
T TIGR02525 230 GVGEIRDLETFQAAVLA 246 (372)
T ss_pred eeCCCCCHHHHHHHHHH
Confidence 99999998887754443
No 489
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.58 E-value=0.057 Score=50.94 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 378999999999999999997764
No 490
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.58 E-value=0.3 Score=56.55 Aligned_cols=176 Identities=16% Similarity=0.131 Sum_probs=83.9
Q ss_pred cceEEEEecCCCCChHHHHHHHHHH-hhcc---C-Ccc--eeeccchhhhhccc-------chh--HHhHHHHHHHhc--
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSN-ISSH---F-EGS--YFMQNIRDESEKVG-------GLA--NIHLNFERRRLS-- 242 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~-~~~~---f-~~~--~~~~~~~~~~~~~~-------~l~--~~~l~~~~~~L~-- 242 (664)
+.+++.|.|+.+.||||+.+.+.-- +-.+ | +.. ..+.-+.......+ .+. ..++..+...+.
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~ 405 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKA 405 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhC
Confidence 3568899999999999999987644 1111 1 000 00000011111111 000 112222333332
Q ss_pred CceEEEEEecCCC---HHHHH----HHhccCCCCCCCcEEEEEeCCHHHHHhhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 243 RMKVLIVFYDLTD---LKQID----LLIGRLDGFVPGSRVIITTRDVQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 243 ~~~~LlVlDdv~~---~~~~~----~l~~~~~~~~~gs~IliTtR~~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
..+-|+++|.... ..... .+...+. ..|+.+|+||-..++..............+. ++.+ . +-..+-
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~~-~--l~~~Yk 479 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDEE-T--LRPTYR 479 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-EecC-c--CcEEEE
Confidence 4788999999752 22222 2222332 2478999999998876544321111112221 1111 1 101111
Q ss_pred hCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcCCCCHHHHHHHHHHhh
Q 006018 316 FGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLKGMSEEEWESAVNKLK 366 (664)
Q Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~~~~~~~w~~~l~~l~ 366 (664)
+....+. ...+-.|++.+ |+|-.+.--|..+.+....++...+.++.
T Consensus 480 l~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 480 LLIGIPG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred EeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1111222 23355566665 78888887777775544445555555543
No 491
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.58 E-value=0.19 Score=43.92 Aligned_cols=116 Identities=18% Similarity=0.290 Sum_probs=0.0
Q ss_pred ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEcc
Q 006018 511 NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLA 589 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 589 (664)
+|+.+.+.. .++.++. .+..+++|+.+.+.++ ....-...+.+.++|+.+.+.. .....-...+..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Q ss_pred CCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCc
Q 006018 590 EKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLK 638 (664)
Q Consensus 590 ~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~ 638 (664)
.+ +..++...-.-.+|+.+.+.. ....++.. .+.+|++|+
T Consensus 90 ~~-~~~i~~~~f~~~~l~~i~~~~--~~~~i~~~------~F~~~~~l~ 129 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNCNLKEINIPS--NITKIEEN------AFKNCTKLK 129 (129)
T ss_dssp TT--BEEHTTTTTT-T--EEE-TT--B-SS----------GGG------
T ss_pred cc-ccEEchhhhcCCCceEEEECC--CccEECCc------cccccccCC
No 492
>PRK13764 ATPase; Provisional
Probab=93.57 E-value=0.22 Score=55.21 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=50.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc--chhH--HhHH-HHHHHhcCceEEEEEecCCCHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG--GLAN--IHLN-FERRRLSRMKVLIVFYDLTDLK 257 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~--~l~~--~~l~-~~~~~L~~~~~LlVlDdv~~~~ 257 (664)
+.|.|.|.+|+||||+++++++.+..+-..+..+++..+...... .... .+.. .....|+..+=.+++|.+.+.+
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~~~~~~~~~~~lLR~rPD~IivGEiRd~E 337 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKLEGSMEETADILLLVRPDYTIYDEMRKTE 337 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeeccccHHHHHHHHHhhCCCEEEECCCCCHH
Confidence 458999999999999999999887644333335554444322111 0000 0111 2223366778899999999998
Q ss_pred HHHHH
Q 006018 258 QIDLL 262 (664)
Q Consensus 258 ~~~~l 262 (664)
.++.+
T Consensus 338 t~~~~ 342 (602)
T PRK13764 338 DFKIF 342 (602)
T ss_pred HHHHH
Confidence 88765
No 493
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.55 E-value=0.072 Score=48.98 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..++.|.|++|+|||||+++++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999986
No 494
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.54 E-value=0.13 Score=49.38 Aligned_cols=26 Identities=35% Similarity=0.647 Sum_probs=23.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..++|.|.+|+|||+|+..+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~ 41 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA 41 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEEcCcccccchhhHHHHhcccc
Confidence 57899999999999999999988653
No 495
>PRK04328 hypothetical protein; Provisional
Probab=93.53 E-value=0.12 Score=51.19 Aligned_cols=48 Identities=23% Similarity=0.213 Sum_probs=33.6
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
.|.++|..+=..-.++.|.|.+|+|||+||.++......+-+.++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 444555433344678999999999999999998776444445555654
No 496
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.52 E-value=0.07 Score=54.96 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=36.7
Q ss_pred CCCCceeehhhHHHHHh-hhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 157 NKDQLVGVESIIKEIES-QLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~-~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
....++|.+..++.+.- .+..+ ..-+.+.|.+|+||||+|+.+..-+
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~---~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPG---IGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccC---CCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 56778999999887764 44322 2358999999999999999997764
No 497
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.51 E-value=0.046 Score=29.10 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=5.7
Q ss_pred CCCEEEccCCCCcccc
Q 006018 582 SLEYLNLAEKDFEKIP 597 (664)
Q Consensus 582 ~L~~L~l~~n~i~~lp 597 (664)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444555544444443
No 498
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.50 E-value=0.29 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=21.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.-..++|+|+.|.|||||++.+..-
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~ 384 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGL 384 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999988754
No 499
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.50 E-value=0.072 Score=52.03 Aligned_cols=48 Identities=27% Similarity=0.214 Sum_probs=32.4
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-CCcceeec
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-FEGSYFMQ 217 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 217 (664)
.|.++|..+-....++.|.|.+|+|||+||.+++.....+ =+.++|+.
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 4445554333456789999999999999999988765444 44455553
No 500
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.49 E-value=0.069 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.++|.|+|++|+|||||++.+..+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999998864
Done!