Query 006018
Match_columns 664
No_of_seqs 595 out of 3662
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 13:47:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.5E-39 1.5E-43 356.3 20.6 282 162-456 131-472 (549)
2 3jrn_A AT1G72930 protein; TIR 100.0 3.9E-39 1.3E-43 292.5 8.5 139 12-154 5-175 (176)
3 3ozi_A L6TR; plant TIR domain, 100.0 5.6E-39 1.9E-43 295.6 7.6 141 7-151 27-202 (204)
4 3sfz_A APAF-1, apoptotic pepti 100.0 8E-35 2.7E-39 355.3 13.9 289 153-455 119-452 (1249)
5 1vt4_I APAF-1 related killer D 100.0 1.5E-33 5.2E-38 315.9 10.2 262 159-448 128-436 (1221)
6 1z6t_A APAF-1, apoptotic prote 100.0 7.2E-33 2.5E-37 311.0 13.2 283 152-451 118-448 (591)
7 3h16_A TIR protein; bacteria T 100.0 1.8E-29 6.3E-34 229.3 8.2 110 10-120 15-125 (154)
8 3ub2_A TOLL/interleukin-1 rece 99.9 7.7E-24 2.6E-28 188.9 4.3 106 10-117 5-113 (146)
9 2js7_A Myeloid differentiation 99.9 3.7E-22 1.3E-26 181.2 6.2 102 10-113 11-117 (160)
10 1fyx_A TOLL-like receptor 2; b 99.8 2.8E-22 9.6E-27 180.2 2.5 98 12-111 2-104 (149)
11 1t3g_A X-linked interleukin-1 99.8 2.1E-21 7.1E-26 176.1 6.9 101 14-114 1-115 (159)
12 2j67_A TOLL like receptor 10; 99.8 8.5E-22 2.9E-26 181.5 4.5 102 10-113 30-136 (178)
13 4fcg_A Uncharacterized protein 99.8 7.2E-19 2.5E-23 181.7 13.5 142 479-622 93-247 (328)
14 4fcg_A Uncharacterized protein 99.7 3.5E-17 1.2E-21 169.0 15.1 165 480-654 117-296 (328)
15 3rfs_A Internalin B, repeat mo 99.7 2.2E-16 7.5E-21 158.6 15.6 169 478-654 52-224 (272)
16 3m19_A Variable lymphocyte rec 99.7 5.6E-16 1.9E-20 153.6 16.9 167 476-650 23-194 (251)
17 1ogq_A PGIP-2, polygalacturona 99.7 5.3E-17 1.8E-21 166.6 9.2 166 481-654 116-287 (313)
18 2o6q_A Variable lymphocyte rec 99.7 9.7E-16 3.3E-20 153.7 18.0 155 488-650 60-220 (270)
19 3rgz_A Protein brassinosteroid 99.7 1.9E-16 6.6E-21 182.6 13.3 167 481-654 481-723 (768)
20 1ozn_A Reticulon 4 receptor; N 99.7 8.1E-16 2.8E-20 155.6 15.9 158 487-651 54-217 (285)
21 1ogq_A PGIP-2, polygalacturona 99.7 1.3E-16 4.6E-21 163.5 9.6 165 481-654 92-263 (313)
22 1ozn_A Reticulon 4 receptor; N 99.6 6.7E-16 2.3E-20 156.2 13.7 159 487-652 78-242 (285)
23 1p9a_G Platelet glycoprotein I 99.6 2.4E-15 8.4E-20 152.2 16.8 161 478-648 21-185 (290)
24 3rgz_A Protein brassinosteroid 99.6 5.9E-16 2E-20 178.6 13.8 167 481-654 457-699 (768)
25 2v70_A SLIT-2, SLIT homolog 2 99.6 1.5E-15 5.1E-20 147.2 13.5 153 492-652 14-170 (220)
26 3rfs_A Internalin B, repeat mo 99.6 3.1E-15 1.1E-19 150.1 15.5 158 487-653 39-199 (272)
27 3m19_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 147.6 15.7 156 489-652 14-172 (251)
28 3e6j_A Variable lymphocyte rec 99.6 2.9E-15 1E-19 146.1 14.6 153 491-652 21-176 (229)
29 4ezg_A Putative uncharacterize 99.6 1.5E-15 5.2E-20 144.5 11.1 151 487-649 42-195 (197)
30 2o6s_A Variable lymphocyte rec 99.6 4.4E-15 1.5E-19 142.6 13.8 162 478-654 18-184 (208)
31 2o6q_A Variable lymphocyte rec 99.6 1.1E-14 3.6E-19 146.0 17.1 169 476-652 25-198 (270)
32 2z66_A Variable lymphocyte rec 99.6 2.5E-15 8.5E-20 153.6 11.9 135 511-652 102-240 (306)
33 2z66_A Variable lymphocyte rec 99.6 3E-15 1E-19 153.0 12.5 165 481-652 92-265 (306)
34 2v9t_B SLIT homolog 2 protein 99.6 6.4E-15 2.2E-19 142.7 13.9 150 492-649 14-166 (220)
35 2z62_A TOLL-like receptor 4, v 99.6 5.8E-15 2E-19 148.5 14.1 163 490-652 29-217 (276)
36 3zyj_A Leucine-rich repeat-con 99.6 1E-14 3.5E-19 157.1 16.8 157 487-652 110-272 (440)
37 2qen_A Walker-type ATPase; unk 99.6 3.7E-15 1.3E-19 155.3 12.8 273 157-449 10-349 (350)
38 3zyj_A Leucine-rich repeat-con 99.6 5.7E-15 1.9E-19 159.1 14.4 158 487-652 86-248 (440)
39 3zyi_A Leucine-rich repeat-con 99.6 1.3E-14 4.5E-19 156.8 17.2 157 487-652 121-283 (452)
40 2o6s_A Variable lymphocyte rec 99.6 8.2E-15 2.8E-19 140.7 13.0 158 492-657 10-170 (208)
41 3zyi_A Leucine-rich repeat-con 99.6 7.2E-15 2.5E-19 158.9 14.0 168 487-662 97-276 (452)
42 1p9a_G Platelet glycoprotein I 99.6 1.3E-14 4.4E-19 146.9 14.6 154 487-649 53-209 (290)
43 4ecn_A Leucine-rich repeat pro 99.6 3.3E-15 1.1E-19 171.9 10.8 137 482-622 481-636 (876)
44 4eco_A Uncharacterized protein 99.6 2.2E-15 7.5E-20 169.9 7.8 132 488-622 248-394 (636)
45 2fna_A Conserved hypothetical 99.6 9.5E-15 3.2E-19 152.6 12.1 273 157-448 11-356 (357)
46 3v47_A TOLL-like receptor 5B a 99.6 1.2E-14 4.1E-19 157.3 13.2 137 511-654 276-414 (455)
47 1wwl_A Monocyte differentiatio 99.6 6E-15 2.1E-19 151.2 10.1 153 487-650 119-289 (312)
48 2xwt_C Thyrotropin receptor; s 99.6 1.7E-14 5.8E-19 141.7 12.8 179 477-663 41-237 (239)
49 4eco_A Uncharacterized protein 99.5 3E-14 1E-18 160.6 15.7 167 477-653 387-583 (636)
50 2z62_A TOLL-like receptor 4, v 99.5 2.2E-14 7.4E-19 144.3 13.0 160 488-654 75-243 (276)
51 1h6u_A Internalin H; cell adhe 99.5 5.9E-14 2E-18 143.4 16.1 122 487-615 61-184 (308)
52 4ecn_A Leucine-rich repeat pro 99.5 6E-14 2.1E-18 161.5 16.9 173 480-662 632-837 (876)
53 2id5_A Lingo-1, leucine rich r 99.5 3.4E-14 1.2E-18 154.7 14.0 158 488-652 55-217 (477)
54 3oja_B Anopheles plasmodium-re 99.5 4.9E-14 1.7E-18 157.8 15.7 84 487-570 97-184 (597)
55 1xku_A Decorin; proteoglycan, 99.5 3.9E-14 1.3E-18 146.4 13.6 152 487-649 98-254 (330)
56 3o6n_A APL1; leucine-rich repe 99.5 8.3E-14 2.8E-18 147.5 15.7 84 487-570 91-178 (390)
57 2id5_A Lingo-1, leucine rich r 99.5 4.5E-14 1.5E-18 153.8 14.0 168 487-662 78-258 (477)
58 2z80_A TOLL-like receptor 2, v 99.5 1.9E-14 6.5E-19 150.2 10.6 176 477-662 41-232 (353)
59 1h6t_A Internalin B; cell adhe 99.5 6.6E-14 2.2E-18 141.8 13.5 156 478-649 57-214 (291)
60 3vq2_A TLR4, TOLL-like recepto 99.5 4.5E-14 1.5E-18 158.6 13.5 169 476-652 20-198 (606)
61 4ezg_A Putative uncharacterize 99.5 5.3E-14 1.8E-18 133.7 12.0 130 510-650 44-174 (197)
62 3v47_A TOLL-like receptor 5B a 99.5 6.6E-14 2.2E-18 151.5 13.6 149 472-622 15-172 (455)
63 3vq2_A TLR4, TOLL-like recepto 99.5 8.8E-14 3E-18 156.2 14.9 155 491-653 13-171 (606)
64 1w8a_A SLIT protein; signaling 99.5 6.5E-14 2.2E-18 132.5 11.5 127 492-619 11-141 (192)
65 2xot_A Amphoterin-induced prot 99.5 5.2E-14 1.8E-18 147.3 11.9 165 477-649 28-203 (361)
66 2ft3_A Biglycan; proteoglycan, 99.5 8.5E-14 2.9E-18 144.0 13.3 152 488-648 77-254 (332)
67 2z7x_B TOLL-like receptor 1, v 99.5 5.3E-14 1.8E-18 155.0 12.4 157 487-652 322-485 (520)
68 1xku_A Decorin; proteoglycan, 99.5 1.8E-13 6.2E-18 141.3 15.7 158 488-648 144-306 (330)
69 1m9s_A Internalin B; cell inva 99.5 1.5E-13 5E-18 152.9 15.8 158 477-650 53-212 (605)
70 3j0a_A TOLL-like receptor 5; m 99.5 7.6E-14 2.6E-18 162.7 14.0 142 478-621 15-165 (844)
71 2ft3_A Biglycan; proteoglycan, 99.5 1.3E-13 4.4E-18 142.6 14.2 168 478-648 134-307 (332)
72 1xeu_A Internalin C; cellular 99.5 7.8E-14 2.7E-18 139.0 11.7 153 481-650 33-187 (263)
73 4g8a_A TOLL-like receptor 4; l 99.5 7.3E-14 2.5E-18 157.6 12.9 166 478-652 42-218 (635)
74 1w5s_A Origin recognition comp 99.5 1.2E-13 4.2E-18 147.3 14.0 271 157-434 20-371 (412)
75 4glp_A Monocyte differentiatio 99.5 5.4E-14 1.8E-18 143.9 10.7 153 487-650 115-287 (310)
76 2v9t_B SLIT homolog 2 protein 99.5 2.3E-13 7.7E-18 131.8 14.4 139 476-616 20-164 (220)
77 2z80_A TOLL-like receptor 2, v 99.5 2.5E-14 8.6E-19 149.3 8.2 132 487-618 98-236 (353)
78 1h6u_A Internalin H; cell adhe 99.5 1.9E-13 6.6E-18 139.5 14.6 157 477-649 73-231 (308)
79 2z63_A TOLL-like receptor 4, v 99.5 6.7E-14 2.3E-18 155.9 12.1 160 488-654 372-537 (570)
80 2z63_A TOLL-like receptor 4, v 99.5 5.8E-14 2E-18 156.4 11.5 161 486-653 344-512 (570)
81 3oja_B Anopheles plasmodium-re 99.5 2.5E-13 8.4E-18 152.1 16.6 89 552-648 249-337 (597)
82 3e6j_A Variable lymphocyte rec 99.5 2.8E-13 9.5E-18 132.0 14.9 147 472-620 24-175 (229)
83 3o53_A Protein LRIM1, AGAP0063 99.5 6.9E-14 2.4E-18 143.6 10.9 151 488-648 98-250 (317)
84 2ell_A Acidic leucine-rich nuc 99.5 4E-14 1.4E-18 130.9 8.2 133 511-649 25-161 (168)
85 3t6q_A CD180 antigen; protein- 99.5 3.4E-13 1.2E-17 151.4 17.5 139 511-653 351-494 (606)
86 2v70_A SLIT-2, SLIT homolog 2 99.5 2.5E-13 8.4E-18 131.5 14.0 141 477-618 21-167 (220)
87 2xwt_C Thyrotropin receptor; s 99.5 7.2E-14 2.5E-18 137.2 10.2 162 479-652 23-197 (239)
88 2xot_A Amphoterin-induced prot 99.5 1.5E-13 5E-18 143.8 12.9 156 491-651 20-179 (361)
89 2z81_A CD282 antigen, TOLL-lik 99.5 7.1E-14 2.4E-18 155.0 10.9 172 478-650 16-211 (549)
90 3o6n_A APL1; leucine-rich repe 99.5 4.7E-13 1.6E-17 141.6 16.6 88 553-648 244-331 (390)
91 3oja_A Leucine-rich immune mol 99.5 8.1E-14 2.8E-18 151.7 10.8 150 489-648 99-250 (487)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.4E-13 4.9E-18 153.0 12.8 157 487-652 351-514 (562)
93 1wwl_A Monocyte differentiatio 99.5 7.8E-14 2.7E-18 142.8 9.7 159 488-653 94-270 (312)
94 3oja_A Leucine-rich immune mol 99.5 8.8E-14 3E-18 151.4 9.9 150 488-650 79-229 (487)
95 3t6q_A CD180 antigen; protein- 99.5 1.8E-13 6.1E-18 153.7 12.5 167 480-653 267-443 (606)
96 4g8a_A TOLL-like receptor 4; l 99.5 2.2E-13 7.6E-18 153.6 13.3 146 501-653 42-191 (635)
97 1h6t_A Internalin B; cell adhe 99.5 3.5E-13 1.2E-17 136.4 13.4 148 487-650 44-193 (291)
98 2je0_A Acidic leucine-rich nuc 99.5 7.9E-14 2.7E-18 126.1 7.3 128 511-644 18-149 (149)
99 2z81_A CD282 antigen, TOLL-lik 99.4 1.4E-13 4.6E-18 152.8 10.5 159 489-654 5-167 (549)
100 1w8a_A SLIT protein; signaling 99.4 5.5E-13 1.9E-17 126.1 12.3 131 512-652 10-143 (192)
101 2ell_A Acidic leucine-rich nuc 99.4 2.7E-13 9.2E-18 125.3 10.0 132 488-622 23-164 (168)
102 3cvr_A Invasion plasmid antige 99.4 2.8E-13 9.4E-18 149.0 11.7 151 478-653 91-248 (571)
103 1ziw_A TOLL-like receptor 3; i 99.4 3.4E-13 1.2E-17 153.7 12.8 167 479-652 16-188 (680)
104 4fmz_A Internalin; leucine ric 99.4 8.2E-13 2.8E-17 137.4 14.6 153 486-652 174-328 (347)
105 4glp_A Monocyte differentiatio 99.4 1.3E-13 4.3E-18 141.2 8.2 151 487-649 143-308 (310)
106 2wfh_A SLIT homolog 2 protein 99.4 6.9E-13 2.4E-17 125.4 12.7 124 492-616 13-138 (193)
107 4fmz_A Internalin; leucine ric 99.4 2.9E-12 9.9E-17 133.2 17.7 176 480-662 57-253 (347)
108 1ziw_A TOLL-like receptor 3; i 99.4 1E-12 3.4E-17 149.7 15.4 144 478-621 36-188 (680)
109 2wfh_A SLIT homolog 2 protein 99.4 6.6E-13 2.3E-17 125.6 11.5 128 512-649 12-140 (193)
110 1m9s_A Internalin B; cell inva 99.4 6.2E-13 2.1E-17 147.8 13.0 159 487-661 41-206 (605)
111 4b8c_D Glucose-repressible alc 99.4 1.3E-13 4.3E-18 157.3 6.9 135 511-654 225-360 (727)
112 2ast_B S-phase kinase-associat 99.4 6.5E-14 2.2E-18 145.0 4.2 152 487-645 91-257 (336)
113 3o53_A Protein LRIM1, AGAP0063 99.4 5E-13 1.7E-17 137.1 10.5 151 487-650 78-229 (317)
114 3j0a_A TOLL-like receptor 5; m 99.4 8.6E-13 2.9E-17 153.8 13.8 161 487-654 46-223 (844)
115 2o6r_A Variable lymphocyte rec 99.4 9E-13 3.1E-17 122.8 11.2 125 492-617 10-137 (177)
116 3g06_A SSPH2 (leucine-rich rep 99.4 4.6E-12 1.6E-16 141.0 18.7 87 478-575 72-158 (622)
117 1jl5_A Outer protein YOPM; leu 99.4 7.5E-12 2.5E-16 134.8 18.9 127 478-615 142-268 (454)
118 3cvr_A Invasion plasmid antige 99.4 3.5E-12 1.2E-16 140.3 16.3 152 478-649 70-221 (571)
119 1dce_A Protein (RAB geranylger 99.4 2.2E-14 7.6E-19 158.5 -1.2 110 534-654 442-552 (567)
120 2je0_A Acidic leucine-rich nuc 99.4 4.2E-13 1.4E-17 121.2 7.4 125 488-613 16-149 (149)
121 3g06_A SSPH2 (leucine-rich rep 99.4 1.9E-12 6.5E-17 144.1 14.0 151 480-652 134-301 (622)
122 2z7x_B TOLL-like receptor 1, v 99.4 1.8E-12 6.2E-17 142.7 13.8 154 489-652 302-461 (520)
123 4b8c_D Glucose-repressible alc 99.4 4.6E-14 1.6E-18 160.8 1.0 133 487-622 222-359 (727)
124 2qby_B CDC6 homolog 3, cell di 99.4 6.9E-12 2.4E-16 132.3 17.4 263 159-434 20-339 (384)
125 1o6v_A Internalin A; bacterial 99.4 3.4E-12 1.2E-16 138.4 15.3 147 488-649 242-389 (466)
126 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.3E-12 4.3E-17 145.3 12.0 154 486-653 28-189 (562)
127 1jl5_A Outer protein YOPM; leu 99.4 7.8E-12 2.7E-16 134.7 17.2 162 489-662 131-307 (454)
128 1o6v_A Internalin A; bacterial 99.4 8.2E-12 2.8E-16 135.3 16.9 127 511-652 244-370 (466)
129 1a9n_A U2A', U2A'; complex (nu 99.4 1E-12 3.5E-17 122.4 8.3 126 485-614 15-150 (176)
130 3bz5_A Internalin-J, INLJ; leu 99.4 7.5E-12 2.6E-16 135.0 16.2 155 487-662 62-222 (457)
131 3bz5_A Internalin-J, INLJ; leu 99.4 1.8E-11 6.1E-16 132.0 19.0 123 511-652 128-250 (457)
132 2ast_B S-phase kinase-associat 99.3 2.1E-13 7.1E-18 141.2 3.4 168 489-663 70-258 (336)
133 1a9n_A U2A', U2A'; complex (nu 99.3 9.8E-13 3.4E-17 122.5 6.8 130 511-648 20-153 (176)
134 2ca6_A RAN GTPase-activating p 99.3 1.5E-13 5E-18 145.3 1.3 169 487-662 92-313 (386)
135 1xeu_A Internalin C; cellular 99.3 1.3E-12 4.5E-17 130.1 8.1 147 487-650 17-165 (263)
136 2o6r_A Variable lymphocyte rec 99.3 7.6E-12 2.6E-16 116.5 12.4 133 511-652 8-141 (177)
137 4ay9_X Follicle-stimulating ho 99.3 4.1E-12 1.4E-16 132.2 11.5 171 476-652 39-219 (350)
138 2ca6_A RAN GTPase-activating p 99.3 5.3E-13 1.8E-17 141.0 2.6 159 487-652 120-320 (386)
139 1njg_A DNA polymerase III subu 99.3 1.9E-11 6.5E-16 119.9 13.1 189 157-350 21-231 (250)
140 1dce_A Protein (RAB geranylger 99.3 4.4E-12 1.5E-16 140.1 8.6 124 511-642 442-567 (567)
141 2qby_A CDC6 homolog 1, cell di 99.3 3E-11 1E-15 127.3 13.5 234 157-398 18-298 (386)
142 2chg_A Replication factor C sm 99.2 4E-11 1.4E-15 115.8 11.0 179 157-346 15-203 (226)
143 3g39_A Variable lymphocyte rec 99.2 4.8E-11 1.6E-15 110.2 10.5 103 512-616 11-114 (170)
144 2v1u_A Cell division control p 99.2 5.1E-11 1.7E-15 125.6 11.9 237 157-401 17-305 (387)
145 2r9u_A Variable lymphocyte rec 99.2 5.3E-11 1.8E-15 110.3 10.6 99 514-615 16-116 (174)
146 1ds9_A Outer arm dynein; leuci 99.2 8.4E-14 2.9E-18 132.5 -8.7 133 511-649 49-186 (198)
147 3g39_A Variable lymphocyte rec 99.1 1.9E-10 6.6E-15 106.1 10.6 109 534-652 10-119 (170)
148 1fnn_A CDC6P, cell division co 99.1 3.7E-10 1.3E-14 119.2 13.8 271 157-434 15-351 (389)
149 3goz_A Leucine-rich repeat-con 99.1 8.2E-12 2.8E-16 130.6 0.9 156 488-650 49-240 (362)
150 4ay9_X Follicle-stimulating ho 99.1 2.3E-10 7.8E-15 119.0 11.5 163 477-649 19-192 (350)
151 2r9u_A Variable lymphocyte rec 99.1 2.6E-10 8.9E-15 105.6 10.6 108 535-652 14-122 (174)
152 3goz_A Leucine-rich repeat-con 99.1 3.4E-11 1.2E-15 125.8 2.9 159 488-649 21-210 (362)
153 1z7x_W Ribonuclease inhibitor; 99.0 3.1E-11 1.1E-15 130.6 0.1 170 490-662 86-294 (461)
154 1ds9_A Outer arm dynein; leuci 99.0 1.3E-12 4.4E-17 124.2 -9.9 122 521-652 36-157 (198)
155 1z7x_W Ribonuclease inhibitor; 99.0 2.7E-11 9.2E-16 131.1 -0.8 171 488-662 198-408 (461)
156 1sxj_B Activator 1 37 kDa subu 99.0 1.1E-09 3.7E-14 112.4 9.9 181 157-347 19-210 (323)
157 2ifg_A High affinity nerve gro 98.9 1.6E-09 5.6E-14 112.3 10.1 100 516-616 14-115 (347)
158 1iqp_A RFCS; clamp loader, ext 98.9 5.6E-09 1.9E-13 107.2 13.6 182 157-346 23-211 (327)
159 1hqc_A RUVB; extended AAA-ATPa 98.9 1.2E-08 4E-13 104.7 14.1 260 157-447 10-311 (324)
160 3sb4_A Hypothetical leucine ri 98.9 7E-09 2.4E-13 106.7 10.6 95 556-663 225-321 (329)
161 3un9_A NLR family member X1; l 98.9 1.6E-10 5.3E-15 120.8 -1.9 61 556-616 154-223 (372)
162 2ifg_A High affinity nerve gro 98.8 7.3E-09 2.5E-13 107.4 10.0 105 537-650 12-118 (347)
163 1jr3_A DNA polymerase III subu 98.8 3.3E-08 1.1E-12 103.5 12.7 186 157-347 14-221 (373)
164 2chq_A Replication factor C sm 98.8 5.8E-08 2E-12 99.1 14.2 181 157-345 15-202 (319)
165 3d8b_A Fidgetin-like protein 1 98.7 8.5E-08 2.9E-12 99.5 14.7 205 133-348 62-296 (357)
166 3bos_A Putative DNA replicatio 98.7 4.1E-08 1.4E-12 95.7 11.4 173 157-346 26-216 (242)
167 3h4m_A Proteasome-activating n 98.7 6.5E-08 2.2E-12 97.2 12.2 202 157-365 15-258 (285)
168 3ogk_B Coronatine-insensitive 98.7 4E-09 1.4E-13 117.8 2.8 127 488-615 163-304 (592)
169 2qz4_A Paraplegin; AAA+, SPG7, 98.7 2.9E-07 1E-11 91.0 16.1 180 157-341 4-215 (262)
170 1jbk_A CLPB protein; beta barr 98.7 1.9E-08 6.7E-13 94.2 7.1 149 157-311 20-194 (195)
171 1d2n_A N-ethylmaleimide-sensit 98.7 3.9E-07 1.3E-11 90.7 16.8 200 159-368 33-264 (272)
172 2qp9_X Vacuolar protein sortin 98.7 2.4E-07 8.2E-12 95.9 15.5 194 143-347 35-261 (355)
173 3eie_A Vacuolar protein sortin 98.7 2.9E-07 1E-11 94.1 15.9 185 157-347 16-228 (322)
174 3sb4_A Hypothetical leucine ri 98.6 1.6E-08 5.3E-13 104.0 5.5 66 580-654 225-292 (329)
175 3b9p_A CG5977-PA, isoform A; A 98.6 1.6E-07 5.3E-12 95.0 12.6 183 154-347 16-233 (297)
176 3ogk_B Coronatine-insensitive 98.6 6.1E-09 2.1E-13 116.3 2.0 165 488-660 191-411 (592)
177 3pfi_A Holliday junction ATP-d 98.6 2.8E-07 9.5E-12 95.0 14.0 252 157-435 27-314 (338)
178 3vfd_A Spastin; ATPase, microt 98.6 5.5E-07 1.9E-11 94.6 16.1 184 157-347 113-326 (389)
179 2z4s_A Chromosomal replication 98.6 2.6E-07 8.7E-12 98.5 13.6 202 158-365 104-332 (440)
180 1sxj_D Activator 1 41 kDa subu 98.6 3.8E-07 1.3E-11 94.5 13.9 182 157-346 35-234 (353)
181 2zan_A Vacuolar protein sortin 98.6 6.5E-07 2.2E-11 95.5 15.7 189 152-347 127-345 (444)
182 1xwi_A SKD1 protein; VPS4B, AA 98.5 9.2E-07 3.1E-11 90.2 15.2 185 157-348 10-224 (322)
183 3syl_A Protein CBBX; photosynt 98.5 1E-06 3.6E-11 89.4 15.0 155 160-316 32-218 (309)
184 1sxj_E Activator 1 40 kDa subu 98.5 6.6E-07 2.2E-11 92.8 12.9 184 157-346 12-236 (354)
185 2p1m_B Transport inhibitor res 98.5 1E-08 3.6E-13 114.4 -0.9 151 488-645 129-324 (594)
186 1l8q_A Chromosomal replication 98.5 7.8E-07 2.7E-11 91.0 12.7 177 157-342 9-203 (324)
187 3un9_A NLR family member X1; l 98.5 3.4E-08 1.2E-12 103.0 2.4 131 488-618 100-253 (372)
188 2p1m_B Transport inhibitor res 98.5 1.6E-08 5.4E-13 112.9 -0.6 176 487-662 103-324 (594)
189 3pvs_A Replication-associated 98.5 4.8E-07 1.7E-11 96.2 10.6 176 157-345 24-213 (447)
190 1sxj_A Activator 1 95 kDa subu 98.4 1E-06 3.6E-11 96.0 13.0 180 157-346 37-252 (516)
191 3uk6_A RUVB-like 2; hexameric 98.4 3.7E-06 1.3E-10 87.6 16.7 180 158-346 43-302 (368)
192 3u61_B DNA polymerase accessor 98.4 3.7E-06 1.3E-10 86.0 13.9 172 157-343 24-212 (324)
193 3cf0_A Transitional endoplasmi 98.3 4.2E-06 1.5E-10 84.5 14.0 155 157-315 13-199 (301)
194 2ra8_A Uncharacterized protein 98.3 2.2E-07 7.7E-12 96.1 4.5 129 488-617 171-320 (362)
195 1lv7_A FTSH; alpha/beta domain 98.3 7.5E-06 2.6E-10 80.6 13.9 155 157-315 10-195 (257)
196 4b4t_J 26S protease regulatory 98.3 9.9E-06 3.4E-10 83.6 14.8 178 154-339 143-353 (405)
197 2p65_A Hypothetical protein PF 98.3 2.4E-06 8.3E-11 79.2 9.1 50 157-208 20-69 (187)
198 1a5t_A Delta prime, HOLB; zinc 98.2 2.1E-05 7.3E-10 80.5 16.8 173 165-347 8-205 (334)
199 2ra8_A Uncharacterized protein 98.2 6.1E-07 2.1E-11 92.8 4.7 131 510-649 172-321 (362)
200 4fdw_A Leucine rich hypothetic 98.2 8.3E-06 2.8E-10 85.8 12.2 106 533-650 248-360 (401)
201 3hu3_A Transitional endoplasmi 98.2 8.3E-06 2.8E-10 87.6 12.1 154 158-315 203-385 (489)
202 4b4t_H 26S protease regulatory 98.2 1.9E-05 6.3E-10 82.7 14.2 158 154-315 204-393 (467)
203 1sxj_C Activator 1 40 kDa subu 98.2 9.7E-06 3.3E-10 83.4 12.1 177 157-343 23-208 (340)
204 3pxg_A Negative regulator of g 98.2 2.1E-05 7.3E-10 84.4 15.1 150 157-315 178-338 (468)
205 4b4t_L 26S protease subunit RP 98.2 1.7E-05 5.9E-10 83.1 14.0 159 154-316 176-366 (437)
206 1in4_A RUVB, holliday junction 98.1 2.9E-05 9.9E-10 79.5 15.2 264 157-446 23-323 (334)
207 4b4t_M 26S protease regulatory 98.1 1.1E-05 3.9E-10 84.4 12.0 158 154-315 176-365 (434)
208 4fdw_A Leucine rich hypothetic 98.1 4.1E-05 1.4E-09 80.4 15.7 148 488-648 225-383 (401)
209 3te6_A Regulatory protein SIR3 98.1 3.6E-06 1.2E-10 84.6 7.2 149 161-315 22-211 (318)
210 4b4t_I 26S protease regulatory 98.1 4.4E-05 1.5E-09 79.0 14.6 158 154-315 177-366 (437)
211 2ce7_A Cell division protein F 98.1 5.1E-05 1.7E-09 80.8 15.3 177 157-340 14-221 (476)
212 3n70_A Transport activator; si 98.1 3.4E-06 1.2E-10 75.0 5.2 111 160-281 2-115 (145)
213 1io0_A Tropomodulin; LRR prote 98.0 1.4E-06 4.9E-11 81.1 1.7 115 527-648 30-164 (185)
214 1ofh_A ATP-dependent HSL prote 98.0 2.9E-05 1E-09 78.5 11.5 49 159-207 15-75 (310)
215 1r6b_X CLPA protein; AAA+, N-t 98.0 7.6E-05 2.6E-09 85.5 16.2 155 157-315 184-362 (758)
216 2r62_A Cell division protease 98.0 4E-06 1.4E-10 83.1 4.7 155 157-315 9-196 (268)
217 4b4t_K 26S protease regulatory 98.0 4.8E-05 1.6E-09 79.6 12.9 158 154-315 167-357 (428)
218 1qvr_A CLPB protein; coiled co 98.0 1.8E-05 6.1E-10 91.7 10.6 170 137-314 152-344 (854)
219 3ec2_A DNA replication protein 98.0 1.1E-05 3.6E-10 74.7 7.1 122 158-281 9-142 (180)
220 1ixz_A ATP-dependent metallopr 98.0 0.00012 4.1E-09 71.7 14.8 155 157-315 14-199 (254)
221 1io0_A Tropomodulin; LRR prote 97.9 3.6E-06 1.2E-10 78.3 2.8 92 525-616 57-163 (185)
222 3pxi_A Negative regulator of g 97.8 0.00011 3.8E-09 84.0 14.1 150 157-315 178-338 (758)
223 3rw6_A Nuclear RNA export fact 97.8 2.7E-06 9.2E-11 83.5 0.4 45 576-621 191-237 (267)
224 3t15_A Ribulose bisphosphate c 97.8 0.00017 5.8E-09 72.3 13.5 127 181-316 35-199 (293)
225 2w58_A DNAI, primosome compone 97.8 3.3E-05 1.1E-09 72.8 7.4 60 157-216 23-88 (202)
226 3co5_A Putative two-component 97.8 8.4E-06 2.9E-10 72.3 2.8 108 159-280 4-114 (143)
227 1iy2_A ATP-dependent metallopr 97.8 0.00025 8.4E-09 70.5 13.6 155 157-315 38-223 (278)
228 3cf2_A TER ATPase, transitiona 97.8 9.9E-05 3.4E-09 83.2 11.5 155 157-315 202-385 (806)
229 3e4g_A ATP synthase subunit S, 97.8 2.5E-05 8.6E-10 71.0 5.4 84 534-618 62-153 (176)
230 2dhr_A FTSH; AAA+ protein, hex 97.7 0.00024 8.1E-09 76.1 13.9 155 157-315 29-214 (499)
231 2x8a_A Nuclear valosin-contain 97.7 0.00014 4.6E-09 72.1 10.8 155 157-315 8-191 (274)
232 2gno_A DNA polymerase III, gam 97.7 0.00016 5.4E-09 72.7 10.7 141 163-315 1-152 (305)
233 4fcw_A Chaperone protein CLPB; 97.7 0.00012 3.9E-09 74.2 9.5 50 159-208 17-73 (311)
234 2bjv_A PSP operon transcriptio 97.7 0.00017 5.8E-09 71.1 10.4 50 158-207 5-54 (265)
235 3rw6_A Nuclear RNA export fact 97.6 2.6E-05 8.8E-10 76.5 3.5 94 515-610 148-257 (267)
236 2kjq_A DNAA-related protein; s 97.6 0.00023 7.8E-09 63.3 8.9 27 182-208 36-62 (149)
237 3pxi_A Negative regulator of g 97.5 0.00029 1E-08 80.5 10.9 147 159-315 491-675 (758)
238 1ypw_A Transitional endoplasmi 97.5 0.00032 1.1E-08 80.3 11.0 154 157-315 202-385 (806)
239 1ojl_A Transcriptional regulat 97.5 0.00059 2E-08 68.6 11.7 48 159-206 2-49 (304)
240 2r44_A Uncharacterized protein 97.4 0.0028 9.7E-08 64.5 15.7 144 158-315 26-198 (331)
241 1eiw_A Hypothetical protein MT 97.4 0.00033 1.1E-08 58.0 6.5 72 14-108 3-74 (111)
242 2c9o_A RUVB-like 1; hexameric 97.2 0.0005 1.7E-08 73.5 8.3 95 157-254 35-136 (456)
243 1um8_A ATP-dependent CLP prote 97.2 0.0027 9.3E-08 65.9 13.3 48 160-207 22-97 (376)
244 3e4g_A ATP synthase subunit S, 97.2 0.00021 7.3E-09 64.9 3.9 91 549-645 53-149 (176)
245 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0031 1.1E-07 72.1 13.5 49 159-207 458-513 (758)
246 3m6a_A ATP-dependent protease 97.1 0.0023 7.8E-08 69.8 11.3 149 160-315 82-266 (543)
247 3cf2_A TER ATPase, transitiona 97.0 0.0017 5.9E-08 73.2 9.5 158 154-315 472-661 (806)
248 2qgz_A Helicase loader, putati 97.0 0.00058 2E-08 68.8 4.9 59 158-216 123-187 (308)
249 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.0011 3.7E-08 66.0 6.7 72 181-256 122-194 (331)
250 1ye8_A Protein THEP1, hypothet 96.9 0.0086 2.9E-07 54.7 12.3 23 184-206 2-24 (178)
251 1g5t_A COB(I)alamin adenosyltr 96.8 0.0024 8.2E-08 58.8 7.2 101 183-283 29-164 (196)
252 4h09_A Hypothetical leucine ri 96.8 0.012 4.3E-07 60.8 13.5 105 529-645 236-343 (379)
253 1u0j_A DNA replication protein 96.7 0.0078 2.7E-07 58.3 10.3 39 168-206 90-128 (267)
254 1qvr_A CLPB protein; coiled co 96.6 0.0069 2.4E-07 70.0 11.3 48 160-207 559-613 (854)
255 1ypw_A Transitional endoplasmi 96.4 0.00079 2.7E-08 77.0 1.6 155 157-315 475-661 (806)
256 3hws_A ATP-dependent CLP prote 96.1 0.0046 1.6E-07 63.8 5.1 47 161-207 17-76 (363)
257 4fs7_A Uncharacterized protein 96.0 0.038 1.3E-06 57.5 12.1 105 528-645 271-376 (394)
258 2orw_A Thymidine kinase; TMTK, 96.0 0.003 1E-07 58.2 3.1 96 183-281 4-112 (184)
259 4fs7_A Uncharacterized protein 96.0 0.034 1.2E-06 57.9 11.3 80 529-613 293-375 (394)
260 1jr3_D DNA polymerase III, del 96.0 0.047 1.6E-06 55.6 12.1 155 181-345 17-183 (343)
261 4gp7_A Metallophosphoesterase; 96.0 0.014 4.6E-07 53.0 7.1 20 182-201 9-28 (171)
262 3c8u_A Fructokinase; YP_612366 95.9 0.0064 2.2E-07 57.2 5.0 41 167-207 7-47 (208)
263 1qhx_A CPT, protein (chloramph 95.8 0.0047 1.6E-07 56.4 3.4 25 183-207 4-28 (178)
264 3jvv_A Twitching mobility prot 95.7 0.019 6.4E-07 58.7 7.8 100 183-285 124-234 (356)
265 1rz3_A Hypothetical protein rb 95.7 0.013 4.5E-07 54.7 6.1 44 164-207 3-47 (201)
266 3hyn_A Putative signal transdu 95.7 0.044 1.5E-06 48.7 8.7 91 15-110 5-118 (189)
267 3kb2_A SPBC2 prophage-derived 95.6 0.0066 2.3E-07 54.9 3.6 25 183-207 2-26 (173)
268 2b8t_A Thymidine kinase; deoxy 95.5 0.027 9.3E-07 53.3 7.5 98 182-282 12-126 (223)
269 1odf_A YGR205W, hypothetical 3 95.5 0.015 5.1E-07 57.7 5.9 30 179-208 28-57 (290)
270 3trf_A Shikimate kinase, SK; a 95.5 0.0082 2.8E-07 55.1 3.6 25 182-206 5-29 (185)
271 3vaa_A Shikimate kinase, SK; s 95.5 0.0084 2.9E-07 55.9 3.7 26 182-207 25-50 (199)
272 2eyu_A Twitching motility prot 95.4 0.026 9E-07 55.0 7.4 101 181-284 24-135 (261)
273 3sr0_A Adenylate kinase; phosp 95.4 0.014 5E-07 54.6 5.2 74 184-263 2-94 (206)
274 3hr8_A Protein RECA; alpha and 95.3 0.033 1.1E-06 56.7 8.0 51 167-217 45-96 (356)
275 3lw7_A Adenylate kinase relate 95.3 0.0087 3E-07 54.2 3.3 22 183-205 2-23 (179)
276 3nbx_X ATPase RAVA; AAA+ ATPas 95.3 0.0079 2.7E-07 64.4 3.2 44 159-206 22-65 (500)
277 1ex7_A Guanylate kinase; subst 95.3 0.0083 2.8E-07 55.1 2.9 29 183-211 2-30 (186)
278 3rfe_A Platelet glycoprotein I 95.2 0.029 9.9E-07 48.2 6.1 33 582-614 32-65 (130)
279 1sky_E F1-ATPase, F1-ATP synth 95.2 0.03 1E-06 58.8 7.2 30 183-212 152-181 (473)
280 4gt6_A Cell surface protein; l 95.2 0.035 1.2E-06 57.8 7.9 37 576-613 329-366 (394)
281 1ly1_A Polynucleotide kinase; 95.2 0.012 4E-07 53.7 3.7 22 183-204 3-24 (181)
282 4h09_A Hypothetical leucine ri 95.2 0.11 3.8E-06 53.5 11.6 107 528-645 212-320 (379)
283 1tue_A Replication protein E1; 95.1 0.016 5.6E-07 53.5 4.3 42 166-208 43-84 (212)
284 1kgd_A CASK, peripheral plasma 95.1 0.013 4.6E-07 53.5 3.7 26 182-207 5-30 (180)
285 3iij_A Coilin-interacting nucl 95.1 0.011 3.8E-07 54.0 3.1 25 182-206 11-35 (180)
286 1kag_A SKI, shikimate kinase I 95.0 0.012 4E-07 53.4 3.2 25 183-207 5-29 (173)
287 1g8p_A Magnesium-chelatase 38 95.0 0.01 3.4E-07 60.7 3.1 49 157-207 22-70 (350)
288 3io5_A Recombination and repai 95.0 0.057 1.9E-06 53.5 8.2 34 184-217 30-65 (333)
289 4gt6_A Cell surface protein; l 95.0 0.07 2.4E-06 55.5 9.5 109 528-648 260-370 (394)
290 1nks_A Adenylate kinase; therm 95.0 0.015 5.1E-07 53.6 3.9 26 183-208 2-27 (194)
291 1via_A Shikimate kinase; struc 95.0 0.012 4.2E-07 53.4 3.2 24 184-207 6-29 (175)
292 2ga8_A Hypothetical 39.9 kDa p 95.0 0.013 4.5E-07 59.2 3.6 48 163-210 3-52 (359)
293 1zp6_A Hypothetical protein AT 94.9 0.014 5E-07 53.7 3.6 24 182-205 9-32 (191)
294 1zuh_A Shikimate kinase; alpha 94.9 0.015 5.3E-07 52.3 3.7 26 182-207 7-32 (168)
295 2rhm_A Putative kinase; P-loop 94.9 0.019 6.5E-07 53.0 4.4 25 182-206 5-29 (193)
296 3t61_A Gluconokinase; PSI-biol 94.9 0.013 4.4E-07 54.7 3.2 25 182-206 18-42 (202)
297 2ze6_A Isopentenyl transferase 94.8 0.016 5.5E-07 56.3 3.8 25 183-207 2-26 (253)
298 1pgv_A TMD-1, tropomodulin TMD 94.8 0.013 4.4E-07 54.1 2.8 14 581-594 98-111 (197)
299 1kht_A Adenylate kinase; phosp 94.8 0.017 5.7E-07 53.2 3.7 25 183-207 4-28 (192)
300 2iyv_A Shikimate kinase, SK; t 94.8 0.014 4.9E-07 53.4 3.2 25 183-207 3-27 (184)
301 3uie_A Adenylyl-sulfate kinase 94.8 0.02 6.7E-07 53.4 4.2 27 181-207 24-50 (200)
302 3tlx_A Adenylate kinase 2; str 94.7 0.019 6.4E-07 55.4 3.9 41 166-206 13-53 (243)
303 2jaq_A Deoxyguanosine kinase; 94.7 0.017 5.7E-07 53.9 3.5 24 184-207 2-25 (205)
304 1y63_A LMAJ004144AAA protein; 94.7 0.022 7.7E-07 52.2 4.3 24 182-205 10-33 (184)
305 3ice_A Transcription terminati 94.7 0.036 1.2E-06 56.4 6.0 29 182-210 174-202 (422)
306 1pgv_A TMD-1, tropomodulin TMD 94.7 0.027 9.1E-07 52.0 4.6 104 511-614 42-167 (197)
307 1xjc_A MOBB protein homolog; s 94.7 0.028 9.6E-07 50.6 4.7 29 181-209 3-31 (169)
308 1knq_A Gluconate kinase; ALFA/ 94.7 0.026 8.8E-07 51.2 4.5 25 182-206 8-32 (175)
309 1g41_A Heat shock protein HSLU 94.6 0.029 9.8E-07 58.8 5.3 52 159-210 15-78 (444)
310 3a00_A Guanylate kinase, GMP k 94.6 0.018 6.1E-07 53.0 3.3 28 183-210 2-29 (186)
311 2ewv_A Twitching motility prot 94.6 0.055 1.9E-06 55.7 7.4 99 182-283 136-245 (372)
312 1e6c_A Shikimate kinase; phosp 94.6 0.018 6.1E-07 52.1 3.2 25 183-207 3-27 (173)
313 2yvu_A Probable adenylyl-sulfa 94.6 0.03 1E-06 51.4 4.8 27 182-208 13-39 (186)
314 3tau_A Guanylate kinase, GMP k 94.6 0.019 6.6E-07 53.8 3.5 26 182-207 8-33 (208)
315 4eun_A Thermoresistant glucoki 94.6 0.021 7.1E-07 53.2 3.7 25 182-206 29-53 (200)
316 2c95_A Adenylate kinase 1; tra 94.6 0.021 7E-07 52.8 3.6 25 182-206 9-33 (196)
317 2qor_A Guanylate kinase; phosp 94.5 0.019 6.4E-07 53.7 3.2 26 182-207 12-37 (204)
318 1ukz_A Uridylate kinase; trans 94.5 0.027 9.4E-07 52.4 4.4 26 181-206 14-39 (203)
319 3rfe_A Platelet glycoprotein I 94.5 0.04 1.4E-06 47.2 5.0 56 584-648 11-68 (130)
320 2r2a_A Uncharacterized protein 94.5 0.025 8.7E-07 52.5 4.0 22 184-205 7-28 (199)
321 1tev_A UMP-CMP kinase; ploop, 94.5 0.024 8.1E-07 52.3 3.9 24 183-206 4-27 (196)
322 1uj2_A Uridine-cytidine kinase 94.5 0.024 8.4E-07 54.9 4.0 28 180-207 20-47 (252)
323 2vli_A Antibiotic resistance p 94.4 0.016 5.4E-07 53.0 2.5 25 183-207 6-30 (183)
324 2bdt_A BH3686; alpha-beta prot 94.4 0.024 8.2E-07 52.2 3.7 22 183-204 3-24 (189)
325 1qf9_A UMP/CMP kinase, protein 94.4 0.03 1E-06 51.5 4.4 25 182-206 6-30 (194)
326 2bwj_A Adenylate kinase 5; pho 94.4 0.022 7.6E-07 52.8 3.5 25 183-207 13-37 (199)
327 3cm0_A Adenylate kinase; ATP-b 94.4 0.025 8.6E-07 51.8 3.8 24 183-206 5-28 (186)
328 3umf_A Adenylate kinase; rossm 94.4 0.029 9.9E-07 52.9 4.2 27 180-206 27-53 (217)
329 3ney_A 55 kDa erythrocyte memb 94.3 0.024 8.1E-07 52.5 3.4 27 181-207 18-44 (197)
330 2pt5_A Shikimate kinase, SK; a 94.3 0.027 9.1E-07 50.6 3.7 24 184-207 2-25 (168)
331 2cdn_A Adenylate kinase; phosp 94.3 0.033 1.1E-06 51.8 4.3 25 182-206 20-44 (201)
332 2plr_A DTMP kinase, probable t 94.2 0.028 9.6E-07 52.6 3.9 27 183-209 5-31 (213)
333 2qt1_A Nicotinamide riboside k 94.2 0.029 9.9E-07 52.5 3.9 26 181-206 20-45 (207)
334 1nn5_A Similar to deoxythymidy 94.2 0.039 1.3E-06 51.8 4.8 28 182-209 9-36 (215)
335 3a4m_A L-seryl-tRNA(SEC) kinas 94.2 0.03 1E-06 54.7 4.0 26 182-207 4-29 (260)
336 3tr0_A Guanylate kinase, GMP k 94.2 0.026 9E-07 52.6 3.5 24 183-206 8-31 (205)
337 2if2_A Dephospho-COA kinase; a 94.2 0.026 8.9E-07 52.6 3.4 21 184-204 3-23 (204)
338 1aky_A Adenylate kinase; ATP:A 94.2 0.028 9.6E-07 53.2 3.7 25 183-207 5-29 (220)
339 1cke_A CK, MSSA, protein (cyti 94.1 0.029 9.9E-07 53.3 3.7 24 183-206 6-29 (227)
340 3p32_A Probable GTPase RV1496/ 94.1 0.061 2.1E-06 55.1 6.3 40 168-207 65-104 (355)
341 1uf9_A TT1252 protein; P-loop, 94.1 0.031 1.1E-06 51.9 3.8 25 181-205 7-31 (203)
342 2wwf_A Thymidilate kinase, put 94.1 0.032 1.1E-06 52.3 3.8 27 182-208 10-36 (212)
343 2dr3_A UPF0273 protein PH0284; 94.1 0.034 1.2E-06 53.4 4.2 35 182-216 23-57 (247)
344 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.043 1.5E-06 52.1 4.8 26 182-207 23-48 (235)
345 2j41_A Guanylate kinase; GMP, 94.0 0.03 1E-06 52.3 3.5 24 183-206 7-30 (207)
346 3e1s_A Exodeoxyribonuclease V, 94.0 0.06 2.1E-06 58.8 6.4 27 183-209 205-231 (574)
347 3tqc_A Pantothenate kinase; bi 94.0 0.038 1.3E-06 55.4 4.4 47 161-207 69-117 (321)
348 3asz_A Uridine kinase; cytidin 93.9 0.034 1.2E-06 52.2 3.7 27 181-207 5-31 (211)
349 2pbr_A DTMP kinase, thymidylat 93.9 0.034 1.2E-06 51.2 3.7 24 184-207 2-25 (195)
350 2cvh_A DNA repair and recombin 93.9 0.04 1.4E-06 51.9 4.2 24 181-204 19-42 (220)
351 1gvn_B Zeta; postsegregational 93.9 0.04 1.4E-06 54.6 4.3 26 181-206 32-57 (287)
352 2bbw_A Adenylate kinase 4, AK4 93.9 0.034 1.2E-06 53.6 3.7 25 182-206 27-51 (246)
353 2grj_A Dephospho-COA kinase; T 93.8 0.038 1.3E-06 51.1 3.7 25 181-205 11-35 (192)
354 1jjv_A Dephospho-COA kinase; P 93.8 0.033 1.1E-06 52.0 3.4 22 183-204 3-24 (206)
355 1lvg_A Guanylate kinase, GMP k 93.8 0.031 1.1E-06 52.0 3.1 25 183-207 5-29 (198)
356 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.057 2E-06 54.6 5.3 97 183-283 172-276 (330)
357 3bh0_A DNAB-like replicative h 93.8 0.047 1.6E-06 54.8 4.6 37 180-216 66-102 (315)
358 4a74_A DNA repair and recombin 93.8 0.037 1.3E-06 52.5 3.7 26 181-206 24-49 (231)
359 1zd8_A GTP:AMP phosphotransfer 93.8 0.036 1.2E-06 52.7 3.6 25 182-206 7-31 (227)
360 3fb4_A Adenylate kinase; psych 93.7 0.039 1.3E-06 51.9 3.7 23 184-206 2-24 (216)
361 3nwj_A ATSK2; P loop, shikimat 93.7 0.033 1.1E-06 53.8 3.2 25 183-207 49-73 (250)
362 1zak_A Adenylate kinase; ATP:A 93.7 0.035 1.2E-06 52.6 3.2 25 183-207 6-30 (222)
363 3dl0_A Adenylate kinase; phosp 93.6 0.041 1.4E-06 51.8 3.7 23 184-206 2-24 (216)
364 2z0h_A DTMP kinase, thymidylat 93.6 0.043 1.5E-06 50.7 3.7 25 184-208 2-26 (197)
365 2pez_A Bifunctional 3'-phospho 93.6 0.048 1.7E-06 49.6 4.0 26 182-207 5-30 (179)
366 2zr9_A Protein RECA, recombina 93.6 0.11 3.7E-06 52.9 7.0 53 165-217 43-96 (349)
367 3e70_C DPA, signal recognition 93.6 0.088 3E-06 53.0 6.2 28 181-208 128-155 (328)
368 1n0w_A DNA repair protein RAD5 93.6 0.04 1.4E-06 52.8 3.5 37 170-206 12-48 (243)
369 3be4_A Adenylate kinase; malar 93.5 0.039 1.3E-06 52.1 3.4 24 183-206 6-29 (217)
370 3upu_A ATP-dependent DNA helic 93.5 0.15 5E-06 54.3 8.2 42 166-210 32-73 (459)
371 4e22_A Cytidylate kinase; P-lo 93.5 0.041 1.4E-06 53.3 3.5 25 182-206 27-51 (252)
372 1u94_A RECA protein, recombina 93.5 0.11 3.8E-06 53.0 6.8 55 163-217 43-98 (356)
373 1vma_A Cell division protein F 93.5 0.1 3.6E-06 51.9 6.5 29 181-209 103-131 (306)
374 2wsm_A Hydrogenase expression/ 93.5 0.052 1.8E-06 51.2 4.1 43 165-209 15-57 (221)
375 2hf9_A Probable hydrogenase ni 93.4 0.051 1.7E-06 51.4 4.0 39 168-208 26-64 (226)
376 2p5t_B PEZT; postsegregational 93.4 0.06 2E-06 52.2 4.5 27 181-207 31-57 (253)
377 3fwy_A Light-independent proto 93.4 0.067 2.3E-06 53.6 4.9 29 180-208 46-74 (314)
378 2v54_A DTMP kinase, thymidylat 93.4 0.044 1.5E-06 51.0 3.4 24 183-206 5-28 (204)
379 3r20_A Cytidylate kinase; stru 93.3 0.05 1.7E-06 51.8 3.7 25 183-207 10-34 (233)
380 1znw_A Guanylate kinase, GMP k 93.3 0.046 1.6E-06 51.2 3.4 25 182-206 20-44 (207)
381 1zu4_A FTSY; GTPase, signal re 93.3 0.1 3.5E-06 52.4 6.2 28 181-208 104-131 (320)
382 2ehv_A Hypothetical protein PH 93.2 0.052 1.8E-06 52.2 3.8 24 182-205 30-53 (251)
383 3k1j_A LON protease, ATP-depen 93.2 0.053 1.8E-06 59.9 4.3 47 157-207 39-85 (604)
384 1m7g_A Adenylylsulfate kinase; 93.2 0.055 1.9E-06 50.8 3.9 26 182-207 25-50 (211)
385 1rj9_A FTSY, signal recognitio 93.2 0.081 2.8E-06 52.7 5.2 28 181-208 101-128 (304)
386 3aez_A Pantothenate kinase; tr 93.2 0.051 1.8E-06 54.4 3.8 28 180-207 88-115 (312)
387 1gtv_A TMK, thymidylate kinase 93.2 0.027 9.3E-07 52.9 1.6 25 184-208 2-26 (214)
388 1z6g_A Guanylate kinase; struc 93.2 0.043 1.5E-06 51.9 3.0 25 182-206 23-47 (218)
389 3ch4_B Pmkase, phosphomevalona 93.2 0.13 4.5E-06 47.5 6.1 25 182-206 11-35 (202)
390 3d3q_A TRNA delta(2)-isopenten 93.1 0.056 1.9E-06 54.4 3.9 25 183-207 8-32 (340)
391 3ake_A Cytidylate kinase; CMP 93.1 0.057 1.9E-06 50.3 3.8 24 184-207 4-27 (208)
392 2jeo_A Uridine-cytidine kinase 93.1 0.061 2.1E-06 51.8 4.0 26 181-206 24-49 (245)
393 1htw_A HI0065; nucleotide-bind 93.1 0.059 2E-06 48.0 3.6 26 181-206 32-57 (158)
394 3crm_A TRNA delta(2)-isopenten 93.1 0.051 1.7E-06 54.4 3.4 25 183-207 6-30 (323)
395 3l0o_A Transcription terminati 93.0 0.066 2.3E-06 54.4 4.2 29 182-210 175-203 (427)
396 3a8t_A Adenylate isopentenyltr 93.0 0.043 1.5E-06 55.1 2.8 26 182-207 40-65 (339)
397 1ak2_A Adenylate kinase isoenz 93.0 0.058 2E-06 51.5 3.7 25 183-207 17-41 (233)
398 1j8m_F SRP54, signal recogniti 92.9 0.12 4E-06 51.4 5.9 27 182-208 98-124 (297)
399 1np6_A Molybdopterin-guanine d 92.9 0.071 2.4E-06 48.3 3.9 27 182-208 6-32 (174)
400 2xb4_A Adenylate kinase; ATP-b 92.9 0.062 2.1E-06 50.9 3.7 23 184-206 2-24 (223)
401 1e4v_A Adenylate kinase; trans 92.8 0.062 2.1E-06 50.5 3.6 23 184-206 2-24 (214)
402 1s96_A Guanylate kinase, GMP k 92.8 0.058 2E-06 50.9 3.4 26 182-207 16-41 (219)
403 2f6r_A COA synthase, bifunctio 92.8 0.064 2.2E-06 52.9 3.8 24 181-204 74-97 (281)
404 1vht_A Dephospho-COA kinase; s 92.8 0.073 2.5E-06 50.2 3.9 22 183-204 5-26 (218)
405 3kl4_A SRP54, signal recogniti 92.7 0.13 4.4E-06 53.8 6.0 29 181-209 96-124 (433)
406 2i3b_A HCR-ntpase, human cance 92.6 0.061 2.1E-06 49.5 3.1 24 184-207 3-26 (189)
407 2px0_A Flagellar biosynthesis 92.6 0.071 2.4E-06 52.9 3.7 26 182-207 105-130 (296)
408 3exa_A TRNA delta(2)-isopenten 92.5 0.07 2.4E-06 52.9 3.5 25 183-207 4-28 (322)
409 2qmh_A HPR kinase/phosphorylas 92.5 0.065 2.2E-06 49.2 3.0 23 183-205 35-57 (205)
410 3b9q_A Chloroplast SRP recepto 92.5 0.11 3.8E-06 51.7 5.0 28 181-208 99-126 (302)
411 3foz_A TRNA delta(2)-isopenten 92.5 0.09 3.1E-06 52.0 4.2 25 182-206 10-34 (316)
412 2ck3_D ATP synthase subunit be 92.5 0.18 6.1E-06 52.9 6.6 34 182-215 153-187 (482)
413 2r8r_A Sensor protein; KDPD, P 92.5 0.13 4.6E-06 48.3 5.2 27 183-209 7-33 (228)
414 2zts_A Putative uncharacterize 92.4 0.07 2.4E-06 51.3 3.4 25 181-205 29-53 (251)
415 1ltq_A Polynucleotide kinase; 92.4 0.08 2.7E-06 52.7 3.9 23 183-205 3-25 (301)
416 1a7j_A Phosphoribulokinase; tr 92.4 0.05 1.7E-06 53.9 2.3 27 181-207 4-30 (290)
417 1svm_A Large T antigen; AAA+ f 92.3 0.1 3.6E-06 53.5 4.7 27 180-206 167-193 (377)
418 3lnc_A Guanylate kinase, GMP k 92.2 0.052 1.8E-06 51.7 2.1 25 182-206 27-52 (231)
419 1cr0_A DNA primase/helicase; R 92.2 0.11 3.7E-06 51.6 4.5 28 182-209 35-62 (296)
420 2v3c_C SRP54, signal recogniti 92.2 0.095 3.3E-06 55.0 4.2 27 182-208 99-125 (432)
421 2f1r_A Molybdopterin-guanine d 92.1 0.047 1.6E-06 49.3 1.5 26 183-208 3-28 (171)
422 1xp8_A RECA protein, recombina 92.0 0.12 4E-06 52.9 4.7 55 163-217 54-109 (366)
423 3b85_A Phosphate starvation-in 92.0 0.075 2.6E-06 49.7 2.9 23 183-205 23-45 (208)
424 1yrb_A ATP(GTP)binding protein 92.0 0.14 4.8E-06 49.6 5.0 27 181-207 13-39 (262)
425 2onk_A Molybdate/tungstate ABC 92.0 0.091 3.1E-06 50.4 3.5 23 183-205 25-47 (240)
426 1puj_A YLQF, conserved hypothe 91.9 0.52 1.8E-05 46.3 9.1 24 182-205 120-143 (282)
427 1sq5_A Pantothenate kinase; P- 91.9 0.098 3.3E-06 52.3 3.8 27 181-207 79-105 (308)
428 2z43_A DNA repair and recombin 91.9 0.12 4.1E-06 52.1 4.5 38 170-207 95-132 (324)
429 1q3t_A Cytidylate kinase; nucl 91.9 0.11 3.7E-06 49.7 4.0 26 181-206 15-40 (236)
430 3end_A Light-independent proto 91.9 0.14 4.7E-06 51.1 4.9 29 181-209 40-68 (307)
431 2xxa_A Signal recognition part 91.8 0.16 5.4E-06 53.3 5.4 30 180-209 98-127 (433)
432 1oix_A RAS-related protein RAB 91.7 0.1 3.4E-06 48.0 3.4 24 182-205 29-52 (191)
433 2og2_A Putative signal recogni 91.7 0.17 5.9E-06 51.5 5.4 28 181-208 156-183 (359)
434 1fx0_B ATP synthase beta chain 91.6 0.19 6.4E-06 52.9 5.7 35 182-216 165-200 (498)
435 3tif_A Uncharacterized ABC tra 91.6 0.085 2.9E-06 50.5 2.9 24 182-205 31-54 (235)
436 1v5w_A DMC1, meiotic recombina 91.6 0.18 6E-06 51.3 5.4 37 170-206 110-146 (343)
437 2j37_W Signal recognition part 91.6 0.21 7.2E-06 53.3 6.2 28 181-208 100-127 (504)
438 2dyk_A GTP-binding protein; GT 91.6 0.12 4.1E-06 45.5 3.8 23 183-205 2-24 (161)
439 2pcj_A ABC transporter, lipopr 91.6 0.081 2.8E-06 50.2 2.7 23 183-205 31-53 (224)
440 4dkx_A RAS-related protein RAB 91.6 0.17 5.8E-06 47.6 4.9 22 184-205 15-36 (216)
441 1cp2_A CP2, nitrogenase iron p 91.6 0.15 5.2E-06 49.7 4.7 27 183-209 2-28 (269)
442 1g8f_A Sulfate adenylyltransfe 91.5 0.13 4.6E-06 54.8 4.6 48 161-208 374-421 (511)
443 3f9v_A Minichromosome maintena 91.5 0.061 2.1E-06 59.1 1.9 49 158-206 294-351 (595)
444 1pzn_A RAD51, DNA repair and r 91.5 0.11 3.8E-06 52.9 3.7 36 171-206 120-155 (349)
445 3zvl_A Bifunctional polynucleo 91.4 0.096 3.3E-06 54.8 3.3 26 181-206 257-282 (416)
446 2wji_A Ferrous iron transport 91.4 0.12 4.1E-06 46.1 3.6 23 183-205 4-26 (165)
447 4eaq_A DTMP kinase, thymidylat 91.4 0.13 4.5E-06 48.9 4.0 28 181-208 25-52 (229)
448 2f9l_A RAB11B, member RAS onco 91.4 0.11 3.7E-06 48.1 3.3 23 183-205 6-28 (199)
449 3dm5_A SRP54, signal recogniti 91.4 0.17 5.8E-06 52.9 5.0 29 181-209 99-127 (443)
450 1nlf_A Regulatory protein REPA 91.3 0.1 3.5E-06 51.4 3.2 26 182-207 30-55 (279)
451 2yhs_A FTSY, cell division pro 91.3 0.17 5.8E-06 53.5 5.0 28 181-208 292-319 (503)
452 2p67_A LAO/AO transport system 91.3 0.22 7.4E-06 50.6 5.7 28 180-207 54-81 (341)
453 3bgw_A DNAB-like replicative h 91.3 0.14 4.8E-06 54.0 4.4 37 180-216 195-231 (444)
454 3eph_A TRNA isopentenyltransfe 91.3 0.12 4E-06 53.2 3.6 25 183-207 3-27 (409)
455 2cbz_A Multidrug resistance-as 91.3 0.096 3.3E-06 50.1 2.9 24 182-205 31-54 (237)
456 2d2e_A SUFC protein; ABC-ATPas 91.2 0.12 4E-06 50.0 3.4 23 183-205 30-52 (250)
457 2zej_A Dardarin, leucine-rich 91.2 0.095 3.2E-06 47.7 2.6 21 184-204 4-24 (184)
458 1ls1_A Signal recognition part 91.1 0.18 6E-06 50.1 4.7 27 182-208 98-124 (295)
459 1b0u_A Histidine permease; ABC 91.1 0.1 3.4E-06 50.8 2.9 24 182-205 32-55 (262)
460 3gfo_A Cobalt import ATP-bindi 91.1 0.1 3.5E-06 51.1 2.9 23 183-205 35-57 (275)
461 2zu0_C Probable ATP-dependent 91.0 0.12 4.1E-06 50.4 3.4 24 182-205 46-69 (267)
462 1ji0_A ABC transporter; ATP bi 91.0 0.11 3.6E-06 49.9 2.9 23 183-205 33-55 (240)
463 1sgw_A Putative ABC transporte 90.9 0.095 3.3E-06 49.2 2.4 23 183-205 36-58 (214)
464 2ocp_A DGK, deoxyguanosine kin 90.9 0.15 5.1E-06 48.9 3.9 25 183-207 3-27 (241)
465 4g1u_C Hemin import ATP-bindin 90.9 0.11 3.7E-06 50.7 2.8 24 182-205 37-60 (266)
466 1g6h_A High-affinity branched- 90.9 0.11 3.8E-06 50.4 2.9 24 182-205 33-56 (257)
467 2r6a_A DNAB helicase, replicat 90.9 0.23 7.9E-06 52.6 5.6 28 181-208 202-229 (454)
468 3fdi_A Uncharacterized protein 90.9 0.14 4.8E-06 47.6 3.5 26 183-208 7-32 (201)
469 2v9p_A Replication protein E1; 90.8 0.13 4.5E-06 51.0 3.5 26 181-206 125-150 (305)
470 2olj_A Amino acid ABC transpor 90.8 0.11 3.8E-06 50.5 2.9 24 182-205 50-73 (263)
471 2pze_A Cystic fibrosis transme 90.8 0.11 3.9E-06 49.3 2.9 23 183-205 35-57 (229)
472 2ged_A SR-beta, signal recogni 90.8 0.16 5.6E-06 46.3 3.9 25 181-205 47-71 (193)
473 2ce2_X GTPase HRAS; signaling 90.8 0.13 4.6E-06 45.2 3.2 22 184-205 5-26 (166)
474 2ff7_A Alpha-hemolysin translo 90.7 0.12 4E-06 49.9 2.9 23 183-205 36-58 (247)
475 2qm8_A GTPase/ATPase; G protei 90.7 0.28 9.5E-06 49.7 5.8 28 180-207 53-80 (337)
476 2afh_E Nitrogenase iron protei 90.7 0.2 6.7E-06 49.5 4.6 26 183-208 3-28 (289)
477 1mv5_A LMRA, multidrug resista 90.7 0.12 4.2E-06 49.6 3.0 24 182-205 28-51 (243)
478 3dz8_A RAS-related protein RAB 90.6 0.59 2E-05 42.5 7.6 23 183-205 24-46 (191)
479 1vpl_A ABC transporter, ATP-bi 90.6 0.12 4.1E-06 50.1 2.9 24 182-205 41-64 (256)
480 2q6t_A DNAB replication FORK h 90.5 0.29 9.9E-06 51.7 6.0 39 169-208 188-226 (444)
481 1fzq_A ADP-ribosylation factor 90.5 0.22 7.4E-06 45.1 4.4 25 181-205 15-39 (181)
482 2ghi_A Transport protein; mult 90.5 0.12 4.2E-06 50.1 2.9 34 182-217 46-79 (260)
483 4a1f_A DNAB helicase, replicat 90.5 0.26 8.9E-06 49.7 5.3 36 181-216 45-80 (338)
484 3lda_A DNA repair protein RAD5 90.5 0.14 4.8E-06 53.0 3.4 37 169-205 165-201 (400)
485 2qi9_C Vitamin B12 import ATP- 90.4 0.13 4.4E-06 49.6 2.9 32 183-216 27-58 (249)
486 3con_A GTPase NRAS; structural 90.4 0.15 5.3E-06 46.4 3.3 23 183-205 22-44 (190)
487 2ixe_A Antigen peptide transpo 90.4 0.13 4.4E-06 50.4 2.9 24 182-205 45-68 (271)
488 1ewq_A DNA mismatch repair pro 90.4 0.46 1.6E-05 53.5 7.7 103 182-286 576-702 (765)
489 3cmu_A Protein RECA, recombina 90.4 0.26 9E-06 60.8 6.1 37 181-217 1426-1462(2050)
490 3gmt_A Adenylate kinase; ssgci 90.4 0.17 5.8E-06 47.9 3.6 24 183-206 9-32 (230)
491 2wjg_A FEOB, ferrous iron tran 90.3 0.17 5.8E-06 46.0 3.6 23 183-205 8-30 (188)
492 2hjg_A GTP-binding protein ENG 90.3 1.9 6.5E-05 45.2 12.1 45 161-205 149-198 (436)
493 1u0l_A Probable GTPase ENGC; p 90.3 0.69 2.3E-05 45.9 8.2 33 168-205 160-192 (301)
494 3thx_A DNA mismatch repair pro 90.3 0.59 2E-05 53.8 8.6 106 182-288 662-791 (934)
495 2yz2_A Putative ABC transporte 90.2 0.13 4.6E-06 50.1 2.9 24 182-205 33-56 (266)
496 2axn_A 6-phosphofructo-2-kinas 90.2 0.24 8E-06 53.4 5.0 29 182-210 35-63 (520)
497 1z2a_A RAS-related protein RAB 90.2 0.2 6.7E-06 44.4 3.8 23 183-205 6-28 (168)
498 2h92_A Cytidylate kinase; ross 90.2 0.15 5.1E-06 47.9 3.1 24 183-206 4-27 (219)
499 2ihy_A ABC transporter, ATP-bi 90.2 0.13 4.6E-06 50.4 2.9 24 183-206 48-71 (279)
500 2nzj_A GTP-binding protein REM 90.2 0.16 5.4E-06 45.4 3.2 23 183-205 5-27 (175)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.5e-39 Score=356.35 Aligned_cols=282 Identities=15% Similarity=0.138 Sum_probs=218.0
Q ss_pred eeehhhHHHHHhhhcCC-CCcceEEEEecCCCCChHHHHHHHHH----HhhccCCcceeeccchhhh------------h
Q 006018 162 VGVESIIKEIESQLLSG-STEFNTVGIWGIGGIGKTTIASAIYS----NISSHFEGSYFMQNIRDES------------E 224 (664)
Q Consensus 162 vGr~~~~~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~------------~ 224 (664)
+||+.++++|.++|..+ ....++|+|+||||+||||||+++|+ ++..+|+.++|+. +++.. .
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCCCCHHHHHHHHHH
Confidence 49999999999999654 34589999999999999999999997 5889999999984 33311 0
Q ss_pred cccc---------hhH---Hh-HHHHHHHhcCc-eEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHHHhhcC
Q 006018 225 KVGG---------LAN---IH-LNFERRRLSRM-KVLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLLKNHRG 290 (664)
Q Consensus 225 ~~~~---------l~~---~~-l~~~~~~L~~~-~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~~ 290 (664)
..+. ..+ .+ ...+++.|.++ |+||||||||+.+++ .+.. .+||+||||||++.++..++.
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCC
Confidence 0000 000 01 46788889996 999999999998876 3322 279999999999999876542
Q ss_pred CccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcCCCCHHHHHHHHHH-hhcCC
Q 006018 291 SRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLKGMSEEEWESAVNK-LKRMP 369 (664)
Q Consensus 291 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~~~~~~~w~~~l~~-l~~~~ 369 (664)
....|++++|+.++|++||.+++|.... .+...+++++|+++|+|+||||+++|+.++.++. +|...+.. +....
T Consensus 284 --~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~ 359 (549)
T 2a5y_B 284 --TCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRG 359 (549)
T ss_dssp --CEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHC
T ss_pred --CCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhccc
Confidence 3467999999999999999999976532 3567789999999999999999999999987753 33333332 22224
Q ss_pred CCcccceeeeecCCCChhhhhhhh-----------hcccccCCCCHHHHHHHHHHc--CCccc-----------ccccee
Q 006018 370 HMDIQKVLKVSYDGLDDEEQNIFL-----------DTACFFKGNDQYLVMNFLDAC--RFSAK-----------IGISRL 425 (664)
Q Consensus 370 ~~~i~~~l~~sy~~L~~~~k~~~l-----------~la~f~~~~~~~~~~~~~~~~--~~~~~-----------~~l~~L 425 (664)
...+..++.+||+.|+++.|.||+ +||+||++..++ ...|.++ |+... ..++.|
T Consensus 360 ~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 360 LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 667999999999999999999999 999999987766 4566665 44321 258999
Q ss_pred cccceeeee----CCeEEechHHHHHHhHHhhccC
Q 006018 426 VGKSLVTIS----NNKITMHDLLQEMGGEIVRQES 456 (664)
Q Consensus 426 ~~~~li~~~----~~~~~mHdlv~~~~~~i~~~~~ 456 (664)
+++||++.. ..+|.|||++|++|++++..++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999999976 2479999999999998887654
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=3.9e-39 Score=292.53 Aligned_cols=139 Identities=42% Similarity=0.667 Sum_probs=114.7
Q ss_pred CCCcceEEEeccccccccchHHHHHHHHhhCCCceeecC-CcCCCCcccHHHHHhhhcCcEEEEEecCCcccchhhHHHH
Q 006018 12 PHPKHDVFLSFRGKDVRHNFVSHLNAALCREKIETFIDD-KLNRGNEISPSLSSAIEGSKISIVIFSEGYASSRWCLNEL 90 (664)
Q Consensus 12 ~~~~~dvFis~~~~d~~~~f~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El 90 (664)
..++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 468999999999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCceEEEEEeecCCCcccccc-------------------------------CCCCcccccCCCChhHhHh
Q 006018 91 VKILESKNKYGQIVVPVFYLVDPSDAGYCP-------------------------------SLGWMGIFDIPTSESVLIE 139 (664)
Q Consensus 91 ~~~~~~~~~~~~~v~pv~~~v~p~~vr~~~-------------------------------~~g~~~~~~~~~~~~~~~~ 139 (664)
++|++|.+.++++|+||||+|+|++||+|+ ++|| +..++|+++|+
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~~~~~~~~Wr~AL~~va~~~G~----~~~~~e~~~i~ 160 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGD----CSGDDDSKLVD 160 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSCCE----ECCSCHHHHHH
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhccCHHHHHHHHHHHHHHhcccce----ecCCCHHHHHH
Confidence 999999988999999999999999999987 6788 66688999999
Q ss_pred hhhhccccccccCCC
Q 006018 140 GNVNDISKKLSDLFP 154 (664)
Q Consensus 140 ~~~~~~~~~l~~~~p 154 (664)
+||++|.++|.+++|
T Consensus 161 ~Iv~~v~~~l~~~~~ 175 (176)
T 3jrn_A 161 KIANEISNKKTIYAT 175 (176)
T ss_dssp HHHHHHHTTCC----
T ss_pred HHHHHHHHHhcCCCC
Confidence 999999999987655
No 3
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=5.6e-39 Score=295.58 Aligned_cols=141 Identities=41% Similarity=0.704 Sum_probs=125.4
Q ss_pred CCCCCCCCcceEEEeccccccccchHHHHHHHHhhCCCceeecC-CcCCCCcccHHHHHhhhcCcEEEEEecCCcccchh
Q 006018 7 SINMIPHPKHDVFLSFRGKDVRHNFVSHLNAALCREKIETFIDD-KLNRGNEISPSLSSAIEGSKISIVIFSEGYASSRW 85 (664)
Q Consensus 7 ~~~~~~~~~~dvFis~~~~d~~~~f~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~w 85 (664)
+|++.+.++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++|+++|+|||++|++|.|
T Consensus 27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W 106 (204)
T 3ozi_A 27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW 106 (204)
T ss_dssp -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence 35566789999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhh-cCceEEEEEeecCCCcccccc-------------------------------CCCCcccccCC--
Q 006018 86 CLNELVKILESKNK-YGQIVVPVFYLVDPSDAGYCP-------------------------------SLGWMGIFDIP-- 131 (664)
Q Consensus 86 c~~El~~~~~~~~~-~~~~v~pv~~~v~p~~vr~~~-------------------------------~~g~~~~~~~~-- 131 (664)
|++||++|++|.+. ++++|+||||+|+|++||+|+ ++|| +..
T Consensus 107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~~~v~~Wr~AL~~va~lsG~----~~~~~ 182 (204)
T 3ozi_A 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGW----HIGKN 182 (204)
T ss_dssp HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCHHHHHHHHHHHHHHHTSCBE----EECTT
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhccCce----ecCCC
Confidence 99999999999865 688999999999999999997 6787 544
Q ss_pred CChhHhHhhhhhcccccccc
Q 006018 132 TSESVLIEGNVNDISKKLSD 151 (664)
Q Consensus 132 ~~~~~~~~~~~~~~~~~l~~ 151 (664)
..|++++++|+++|+++++.
T Consensus 183 ~~e~~~i~~Iv~di~~kl~~ 202 (204)
T 3ozi_A 183 DKQGAIADKVSADIWSHISK 202 (204)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcc
Confidence 56888999999999988753
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8e-35 Score=355.34 Aligned_cols=289 Identities=19% Similarity=0.285 Sum_probs=225.2
Q ss_pred CCCCCCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH---hhccCCcceeeccchhhhh-----
Q 006018 153 FPSDNKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN---ISSHFEGSYFMQNIRDESE----- 224 (664)
Q Consensus 153 ~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~----- 224 (664)
+|. ....||||++++++|.++|......+++|+|+||||+||||||+++|++ ...+|...+||..+.+...
T Consensus 119 ~p~-~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 197 (1249)
T 3sfz_A 119 VPQ-RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLM 197 (1249)
T ss_dssp CCC-CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHH
T ss_pred CCC-CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHH
Confidence 454 6778999999999999999776677899999999999999999999987 4566777665543332110
Q ss_pred -------cccc----------hhHHhHHHHHHHhcCc--eEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHH
Q 006018 225 -------KVGG----------LANIHLNFERRRLSRM--KVLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLL 285 (664)
Q Consensus 225 -------~~~~----------l~~~~l~~~~~~L~~~--~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~ 285 (664)
.... -.+.-.+.++..+.++ |+||||||||+.++|+.+ ++||+||||||++.++
T Consensus 198 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 198 KLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 0000 0001133555666665 999999999998776543 6899999999999887
Q ss_pred HhhcCCccccEEEecC-CCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcCCCCHHHHHHHHHH
Q 006018 286 KNHRGSRVGHVFEVKE-LSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLKGMSEEEWESAVNK 364 (664)
Q Consensus 286 ~~~~~~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~~~~~~~w~~~l~~ 364 (664)
..+.. ....++++. |+.+||++||...++.. .+.+.+.+++|+++|+|+||||+++|++|+.+. ..|...++.
T Consensus 271 ~~~~~--~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~ 344 (1249)
T 3sfz_A 271 DSVMG--PKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQ 344 (1249)
T ss_dssp TTCCS--CBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHH
T ss_pred HhhcC--CceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHH
Confidence 44321 567899996 99999999999988432 234456789999999999999999999997665 468888888
Q ss_pred hhcCCC-----------CcccceeeeecCCCChhhhhhhhhcccccCC--CCHHHHHHHHHHcCCccccccceeccccee
Q 006018 365 LKRMPH-----------MDIQKVLKVSYDGLDDEEQNIFLDTACFFKG--NDQYLVMNFLDACRFSAKIGISRLVGKSLV 431 (664)
Q Consensus 365 l~~~~~-----------~~i~~~l~~sy~~L~~~~k~~~l~la~f~~~--~~~~~~~~~~~~~~~~~~~~l~~L~~~~li 431 (664)
+..... ..+..++.+||+.|++++|.||+++|+||.+ ++...+..+|..++..++..++.|++++|+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~ 424 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSC
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccce
Confidence 765432 2377889999999999999999999999987 466678888876666677789999999999
Q ss_pred eee-CC---eEEechHHHHHHhHHhhcc
Q 006018 432 TIS-NN---KITMHDLLQEMGGEIVRQE 455 (664)
Q Consensus 432 ~~~-~~---~~~mHdlv~~~~~~i~~~~ 455 (664)
+.. ++ .|+||+++|+++++...++
T Consensus 425 ~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 987 33 4999999999999875543
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-33 Score=315.91 Aligned_cols=262 Identities=15% Similarity=0.197 Sum_probs=199.8
Q ss_pred CCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH--hhccCCc-ceeeccchhhhhc----------
Q 006018 159 DQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN--ISSHFEG-SYFMQNIRDESEK---------- 225 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~--~~~~f~~-~~~~~~~~~~~~~---------- 225 (664)
+..|||+.++++|.++|... +..++|+|+||||+||||||+++|++ +..+|+. ++|+. +.+....
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCCSSSHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCCCCCHHHHHHHHHHH
Confidence 34599999999999998743 34789999999999999999999974 7889998 45543 3221100
Q ss_pred ---cc-----c------hh-HH-h-HHHHHHHh---cCceEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHH
Q 006018 226 ---VG-----G------LA-NI-H-LNFERRRL---SRMKVLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLL 285 (664)
Q Consensus 226 ---~~-----~------l~-~~-~-l~~~~~~L---~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~ 285 (664)
.. . .. .. + .+.+++.| .++|+||||||||+.++|+.+ .+||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHH
Confidence 00 0 00 00 1 23445544 679999999999999988875 2689999999999988
Q ss_pred HhhcCCccccEEEec------CCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcCCC--CHHH
Q 006018 286 KNHRGSRVGHVFEVK------ELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLKGM--SEEE 357 (664)
Q Consensus 286 ~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~~~--~~~~ 357 (664)
..+. ....|.++ +|+.+||++||.++. +.. ..++..+ .|+|+||||+++|+.|+++ +.++
T Consensus 279 ~~l~---g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 279 DFLS---AATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHH---HHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HhcC---CCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHH
Confidence 6544 33456777 999999999999884 322 1233333 3999999999999999766 7788
Q ss_pred HHHHHHHhhcCCCCcccceeeeecCCCChhh-hhhhhhcccccCCC--CHHHHHHHHHHcCC-ccccccceecccceeee
Q 006018 358 WESAVNKLKRMPHMDIQKVLKVSYDGLDDEE-QNIFLDTACFFKGN--DQYLVMNFLDACRF-SAKIGISRLVGKSLVTI 433 (664)
Q Consensus 358 w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~~~l~la~f~~~~--~~~~~~~~~~~~~~-~~~~~l~~L~~~~li~~ 433 (664)
|... ....+..++++||+.|++++ |.||+++|+||.+. +...+..+|.+.+. .++..++.|+++||++.
T Consensus 347 W~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~ 419 (1221)
T 1vt4_I 347 WKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419 (1221)
T ss_dssp HHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSB
T ss_pred HhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEE
Confidence 8753 34568899999999999999 99999999999875 45567788876642 46677999999999998
Q ss_pred e--CCeEEechHHHHHH
Q 006018 434 S--NNKITMHDLLQEMG 448 (664)
Q Consensus 434 ~--~~~~~mHdlv~~~~ 448 (664)
+ .++|+|||++++++
T Consensus 420 d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 420 QPKESTISIPSIYLELK 436 (1221)
T ss_dssp CSSSSEEBCCCHHHHHH
T ss_pred eCCCCEEEehHHHHHHh
Confidence 6 46899999998854
No 6
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=7.2e-33 Score=311.00 Aligned_cols=283 Identities=19% Similarity=0.269 Sum_probs=214.1
Q ss_pred CCCCCCCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh---hccCC-cceeeccchhh-----
Q 006018 152 LFPSDNKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI---SSHFE-GSYFMQNIRDE----- 222 (664)
Q Consensus 152 ~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~~~~~~~~~----- 222 (664)
..|. ....||||+.++++|.++|.......++|+|+||||+||||||.+++++. ..+|+ .++|+. +...
T Consensus 118 ~~P~-~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~~~~ 195 (591)
T 1z6t_A 118 GVPQ-RPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDKSGL 195 (591)
T ss_dssp TCCC-CCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCHHHH
T ss_pred CCCC-CCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCchHHH
Confidence 3455 67789999999999999997655668999999999999999999999864 77896 455653 2211
Q ss_pred hh-------ccc----------chhHHhHHHHHHHhcC--ceEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHH
Q 006018 223 SE-------KVG----------GLANIHLNFERRRLSR--MKVLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQ 283 (664)
Q Consensus 223 ~~-------~~~----------~l~~~~l~~~~~~L~~--~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~ 283 (664)
.. ..+ .-.+.-...+...+.+ +++||||||+|+.++++. +++|++||||||++.
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~-------l~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT-------TCSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH-------hcCCCeEEEECCCcH
Confidence 00 000 0000113355556655 789999999999776553 367899999999988
Q ss_pred HHHhhcCCccccEEEe---cCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcCCCCHHHHHH
Q 006018 284 LLKNHRGSRVGHVFEV---KELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLKGMSEEEWES 360 (664)
Q Consensus 284 ~~~~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~~~~~~~w~~ 360 (664)
++..+. ...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|+.++... ..|..
T Consensus 269 ~~~~~~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~ 340 (591)
T 1z6t_A 269 VTDSVM----GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEY 340 (591)
T ss_dssp GGTTCC----SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHH
T ss_pred HHHhcC----CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHH
Confidence 765443 334555 4899999999999988542 223346788999999999999999999997653 36888
Q ss_pred HHHHhhcCCC-----------CcccceeeeecCCCChhhhhhhhhcccccCC--CCHHHHHHHHHHcCCccccccceecc
Q 006018 361 AVNKLKRMPH-----------MDIQKVLKVSYDGLDDEEQNIFLDTACFFKG--NDQYLVMNFLDACRFSAKIGISRLVG 427 (664)
Q Consensus 361 ~l~~l~~~~~-----------~~i~~~l~~sy~~L~~~~k~~~l~la~f~~~--~~~~~~~~~~~~~~~~~~~~l~~L~~ 427 (664)
.+..+..... ..+..++..||+.|+++.|.||+++|+||.+ ++...+..+|..........+..|++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~ 420 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVN 420 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHh
Confidence 8888765432 2467789999999999999999999999986 45566777775443455667999999
Q ss_pred cceeeee--C--CeEEechHHHHHHhHH
Q 006018 428 KSLVTIS--N--NKITMHDLLQEMGGEI 451 (664)
Q Consensus 428 ~~li~~~--~--~~~~mHdlv~~~~~~i 451 (664)
+||+... + ..|.||+++|+++++.
T Consensus 421 ~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 421 KSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred CcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 9999876 2 2799999999999876
No 7
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.96 E-value=1.8e-29 Score=229.31 Aligned_cols=110 Identities=23% Similarity=0.446 Sum_probs=103.4
Q ss_pred CCCCCcceEEEeccccccccchHHHHHHHHhhCCCceeecC-CcCCCCcccHHHHHhhhcCcEEEEEecCCcccchhhHH
Q 006018 10 MIPHPKHDVFLSFRGKDVRHNFVSHLNAALCREKIETFIDD-KLNRGNEISPSLSSAIEGSKISIVIFSEGYASSRWCLN 88 (664)
Q Consensus 10 ~~~~~~~dvFis~~~~d~~~~f~~~l~~~l~~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~ 88 (664)
..+.++|||||||+|+| +..|+.||+.+|+++||+||+|+ ++.+|+.|.++|.+||++|+++|+|+|++|+.|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 45679999999999999 66899999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCceEEEEEeecCCCcccccc
Q 006018 89 ELVKILESKNKYGQIVVPVFYLVDPSDAGYCP 120 (664)
Q Consensus 89 El~~~~~~~~~~~~~v~pv~~~v~p~~vr~~~ 120 (664)
|+..+++|...+++.|+||||+++|++||+|.
T Consensus 94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~ 125 (154)
T 3h16_A 94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125 (154)
T ss_dssp HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTC
T ss_pred HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCC
Confidence 99999999877888999999999999999987
No 8
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.88 E-value=7.7e-24 Score=188.92 Aligned_cols=106 Identities=15% Similarity=0.268 Sum_probs=79.8
Q ss_pred CCCCCcceEEEeccccccccchHHHHHHHHhh--CCCceeecC-CcCCCCcccHHHHHhhhcCcEEEEEecCCcccchhh
Q 006018 10 MIPHPKHDVFLSFRGKDVRHNFVSHLNAALCR--EKIETFIDD-KLNRGNEISPSLSSAIEGSKISIVIFSEGYASSRWC 86 (664)
Q Consensus 10 ~~~~~~~dvFis~~~~d~~~~f~~~l~~~l~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc 86 (664)
....+.|||||||+++|++ ||++|+++|++ .|+++|+|+ |+.+|+.|.++|.+||++|+++|+|+|++|++|.||
T Consensus 5 ~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc 82 (146)
T 3ub2_A 5 SRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC 82 (146)
T ss_dssp CTTSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred CCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence 5567899999999999964 69999999998 599999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCceEEEEEeecCCCccc
Q 006018 87 LNELVKILESKNKYGQIVVPVFYLVDPSDAG 117 (664)
Q Consensus 87 ~~El~~~~~~~~~~~~~v~pv~~~v~p~~vr 117 (664)
..|+..|+.+...+...|+||+|++++.++.
T Consensus 83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp 113 (146)
T 3ub2_A 83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113 (146)
T ss_dssp HHHHHHHHHTSSSSSSEEEEEECSCCGGGSC
T ss_pred HHHHHHHHHHHhhcCCcEEEEEcCCChhhCC
Confidence 9999999998633333677999998765543
No 9
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.85 E-value=3.7e-22 Score=181.18 Aligned_cols=102 Identities=19% Similarity=0.256 Sum_probs=91.8
Q ss_pred CCCCCcceEEEeccccccccchHHHHHHHHhhC--CCceeecC-CcCCCCcccHHHHHhhh-cCcEEEEEecCCcccchh
Q 006018 10 MIPHPKHDVFLSFRGKDVRHNFVSHLNAALCRE--KIETFIDD-KLNRGNEISPSLSSAIE-GSKISIVIFSEGYASSRW 85 (664)
Q Consensus 10 ~~~~~~~dvFis~~~~d~~~~f~~~l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~-~s~~~i~v~S~~y~~s~w 85 (664)
....+.|||||||+++| ..||.+|+++|+++ |+++|+|+ |+.+|+.+.++|.++|+ +|+++|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 34468999999999999 47999999999985 69999999 99999999999999999 799999999999999999
Q ss_pred hHHHHHHHHHhh-hhcCceEEEEEeecCC
Q 006018 86 CLNELVKILESK-NKYGQIVVPVFYLVDP 113 (664)
Q Consensus 86 c~~El~~~~~~~-~~~~~~v~pv~~~v~p 113 (664)
|+.|+..|+.+. +.+++.|+||+|+.-+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 999999999874 4456689999998654
No 10
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.84 E-value=2.8e-22 Score=180.20 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=89.6
Q ss_pred CCCcceEEEeccccccccchHHH-HHHHHhhC--CCceeecC-CcCCCCcccHHHHHhhhcCcEEEEEecCCcccchhhH
Q 006018 12 PHPKHDVFLSFRGKDVRHNFVSH-LNAALCRE--KIETFIDD-KLNRGNEISPSLSSAIEGSKISIVIFSEGYASSRWCL 87 (664)
Q Consensus 12 ~~~~~dvFis~~~~d~~~~f~~~-l~~~l~~~--g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~ 87 (664)
..+.|||||||+++|+ .|+.+ |+++|+++ |+++|+|+ |+.+|+.+.++|.+||++|+++|+|+|++|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4578999999999995 69997 99999987 99999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhhcCceEEEEEeec
Q 006018 88 NELVKILES-KNKYGQIVVPVFYLV 111 (664)
Q Consensus 88 ~El~~~~~~-~~~~~~~v~pv~~~v 111 (664)
.|+..|+.+ .+.++..|+||+|+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~ 104 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEP 104 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecC
Confidence 999998864 455677899999974
No 11
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.83 E-value=2.1e-21 Score=176.05 Aligned_cols=101 Identities=19% Similarity=0.225 Sum_probs=90.0
Q ss_pred CcceEEEecccccc---------ccchHHHHHH-HHh-hCCCceeecC-CcCCCCcccHHHHHhhhcCcEEEEEecCCcc
Q 006018 14 PKHDVFLSFRGKDV---------RHNFVSHLNA-ALC-REKIETFIDD-KLNRGNEISPSLSSAIEGSKISIVIFSEGYA 81 (664)
Q Consensus 14 ~~~dvFis~~~~d~---------~~~f~~~l~~-~l~-~~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~ 81 (664)
+.|||||||+++|+ ++.||.++.. .|+ +.|+++|+|+ |+.+|+.+.++|.+||++||++|+|+|++|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 46999999999997 3578988775 699 7999999999 9999999999999999999999999999997
Q ss_pred -cchhhHHHHHHHHHhh-hhcCceEEEEEeecCCC
Q 006018 82 -SSRWCLNELVKILESK-NKYGQIVVPVFYLVDPS 114 (664)
Q Consensus 82 -~s~wc~~El~~~~~~~-~~~~~~v~pv~~~v~p~ 114 (664)
.|.||..|+..|+.+. ++++..|+||++...+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999985 56678999999986554
No 12
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.83 E-value=8.5e-22 Score=181.54 Aligned_cols=102 Identities=21% Similarity=0.340 Sum_probs=87.7
Q ss_pred CCCCCcceEEEeccccccccchHHH-HHHHHhh--CCCceeecC-CcCCCCcccHHHHHhhhcCcEEEEEecCCcccchh
Q 006018 10 MIPHPKHDVFLSFRGKDVRHNFVSH-LNAALCR--EKIETFIDD-KLNRGNEISPSLSSAIEGSKISIVIFSEGYASSRW 85 (664)
Q Consensus 10 ~~~~~~~dvFis~~~~d~~~~f~~~-l~~~l~~--~g~~~~~d~-~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~w 85 (664)
....+.|||||||+++|+ .||.+ |+++|++ +|+++|+|+ |+.+|+.|.++|.+||++|+++|+|+|++|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 446789999999999995 79975 9999998 899999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh-hhhcCceEEEEEeecCC
Q 006018 86 CLNELVKILES-KNKYGQIVVPVFYLVDP 113 (664)
Q Consensus 86 c~~El~~~~~~-~~~~~~~v~pv~~~v~p 113 (664)
|+.|+..|+.+ .+++++.|+||+|+.-|
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~ 136 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIP 136 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCC
Confidence 99999999865 35567789999998543
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.78 E-value=7.2e-19 Score=181.67 Aligned_cols=142 Identities=26% Similarity=0.500 Sum_probs=101.1
Q ss_pred CccCCCcc-CcCcccEEEcCCCCCCcccccccc---cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccC
Q 006018 479 NTSLPTGI-NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLC 554 (664)
Q Consensus 479 ~~~lp~~~-~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~ 554 (664)
...+|+.+ ++++|+.|++++|... .+|..+. +|+.|++++|.+..+|..++.+++|++|++++|+.+..+|..+.
T Consensus 93 l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 93 LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171 (328)
T ss_dssp CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSE
T ss_pred chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHh
Confidence 34566544 3777777777777654 6665443 67777777777777777777777777777777777777776554
Q ss_pred C---------CCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCC
Q 006018 555 N---------LKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 555 ~---------l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 622 (664)
. +++|++|+|++|.+ ..+|..++++++|++|++++|.+..+|..+..+++|+.|+|++|+..+.+|.
T Consensus 172 ~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 172 STDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp EEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred hccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH
Confidence 3 77777777777764 3677777777777777777777777777777777777777777777776665
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.72 E-value=3.5e-17 Score=168.97 Aligned_cols=165 Identities=22% Similarity=0.335 Sum_probs=94.1
Q ss_pred ccCCCcc-CcCcccEEEcCCCCCCcccccccc---ccccccccccc-ccccccccCC---------CCCCcEEeecCCCC
Q 006018 480 TSLPTGI-NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETA-IEELPSSIGN---------LSRLVDLDLTNCSG 545 (664)
Q Consensus 480 ~~lp~~~-~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~-i~~lp~~~~~---------l~~L~~L~l~~~~~ 545 (664)
..+|..+ .+++|+.|++++|... .+|..+. +|+.|++++|. +..+|..+.. +++|++|++++|.
T Consensus 117 ~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~- 194 (328)
T 4fcg_A 117 MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG- 194 (328)
T ss_dssp CCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-
T ss_pred cchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-
Confidence 3455443 3666666666666543 4554333 55666666643 3355554432 6666666666543
Q ss_pred CCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCcCCCCC
Q 006018 546 LKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFE-KIPSSMKQLSKLSDLRLQNCKRLQSLPELP 624 (664)
Q Consensus 546 l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~ 624 (664)
+..+|..+..+++|++|+|++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|+.|+|++|+..+.+|.
T Consensus 195 l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-- 271 (328)
T 4fcg_A 195 IRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-- 271 (328)
T ss_dssp CCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT--
T ss_pred cCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch--
Confidence 3355555666666666666666533 45555666666666666665443 4555566666666666666666666665
Q ss_pred CCCEEeeeCCCCCccccCCCcccccCCCCC
Q 006018 625 CGSSIHARHCTSLKTLSNSSTLLTRSSKHW 654 (664)
Q Consensus 625 ~~~~l~~~~~~~L~~L~ls~N~l~~~~~~~ 654 (664)
.+.++++|+.|++++|.+.+.+|.+
T Consensus 272 -----~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 272 -----DIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp -----TGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred -----hhhcCCCCCEEeCCCCCchhhccHH
Confidence 4555666666666666666655554
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.69 E-value=2.2e-16 Score=158.56 Aligned_cols=169 Identities=20% Similarity=0.198 Sum_probs=129.9
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCccccccc--ccccccccccccccccccc-cCCCCCCcEEeecCCCCCCccccccC
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEIS--CNIEDLDLKETAIEELPSS-IGNLSRLVDLDLTNCSGLKSVSSRLC 554 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~--~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~ 554 (664)
....++....+++|+.|++++|... .++... .+|+.|++++|.++.+++. +..+++|++|++++|......+..+.
T Consensus 52 ~i~~~~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 130 (272)
T 3rfs_A 52 DIKSVQGIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD 130 (272)
T ss_dssp CCCCCTTGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CcccccccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc
Confidence 3445555556899999999998754 344332 2899999999999988764 68899999999998776555555688
Q ss_pred CCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeC
Q 006018 555 NLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARH 633 (664)
Q Consensus 555 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~ 633 (664)
.+++|++|++++|.+.+..|..+..+++|++|++++|.++.+|.. +..+++|+.|++++|++.+..|. .+..
T Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~ 203 (272)
T 3rfs_A 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG-------VFDR 203 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-------TTTT
T ss_pred cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH-------HHhC
Confidence 999999999999986655555678999999999999999988765 58899999999999887665544 3456
Q ss_pred CCCCccccCCCcccccCCCCC
Q 006018 634 CTSLKTLSNSSTLLTRSSKHW 654 (664)
Q Consensus 634 ~~~L~~L~ls~N~l~~~~~~~ 654 (664)
+++|+.|++++|.+++..|..
T Consensus 204 l~~L~~L~l~~N~~~~~~~~l 224 (272)
T 3rfs_A 204 LTSLQYIWLHDNPWDCTCPGI 224 (272)
T ss_dssp CTTCCEEECCSSCBCCCTTTT
T ss_pred CcCCCEEEccCCCccccCcHH
Confidence 677777777777766655543
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=5.6e-16 Score=153.62 Aligned_cols=167 Identities=19% Similarity=0.184 Sum_probs=137.4
Q ss_pred cccCccCCCccCcCcccEEEcCCCCCCcccccccc---ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCcccc
Q 006018 476 LNENTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSS 551 (664)
Q Consensus 476 ~~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~ 551 (664)
-+....+|..+. ++++.|++++|......+..+. +|+.|++++|.++.+++ .+..+++|++|++++|......+.
T Consensus 23 ~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 23 GKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp TCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh
Confidence 344557777654 6899999999987665554443 89999999999998776 478999999999999776655556
Q ss_pred ccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCCCcCCCCCCCCEEe
Q 006018 552 RLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNCKRLQSLPELPCGSSIH 630 (664)
Q Consensus 552 ~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~ 630 (664)
.+..+++|++|+|++|.+.+..+..+..+++|++|+|++|.++.+|. .+..+++|+.|+|++|++....|. .
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~ 174 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG-------A 174 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-------T
T ss_pred HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH-------H
Confidence 78899999999999998665445557899999999999999999987 589999999999999877655444 4
Q ss_pred eeCCCCCccccCCCcccccC
Q 006018 631 ARHCTSLKTLSNSSTLLTRS 650 (664)
Q Consensus 631 ~~~~~~L~~L~ls~N~l~~~ 650 (664)
+..+++|+.|++++|++++.
T Consensus 175 ~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSCCBCTT
T ss_pred HhCCCCCCEEEeeCCceeCC
Confidence 67889999999999999875
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=5.3e-17 Score=166.58 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=109.9
Q ss_pred cCCCcc-CcCcccEEEcCCCCCCcccccccc---ccccccccccccc-ccccccCCCC-CCcEEeecCCCCCCccccccC
Q 006018 481 SLPTGI-NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIE-ELPSSIGNLS-RLVDLDLTNCSGLKSVSSRLC 554 (664)
Q Consensus 481 ~lp~~~-~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~~l~~lp~~~~ 554 (664)
.+|..+ .+++|+.|++++|...+.+|..+. +|+.|++++|.+. .+|..++.+. +|++|++++|......|..+.
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 344433 366677777777665555555443 5666777777766 6666666666 677777776655556666666
Q ss_pred CCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCC
Q 006018 555 NLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHC 634 (664)
Q Consensus 555 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~ 634 (664)
.++ |+.|++++|.+.+..|..+..+++|++|++++|.++..++.+..+++|++|+|++|.+.+.+|. .+..+
T Consensus 196 ~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~~l 267 (313)
T 1ogq_A 196 NLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-------GLTQL 267 (313)
T ss_dssp GCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG-------GGGGC
T ss_pred CCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCCh-------HHhcC
Confidence 665 7777777766555666667777777777777777765555566677777777777766666666 56677
Q ss_pred CCCccccCCCcccccCCCCC
Q 006018 635 TSLKTLSNSSTLLTRSSKHW 654 (664)
Q Consensus 635 ~~L~~L~ls~N~l~~~~~~~ 654 (664)
++|+.|++++|.+++.+|..
T Consensus 268 ~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 268 KFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp TTCCEEECCSSEEEEECCCS
T ss_pred cCCCEEECcCCcccccCCCC
Confidence 77777777777777766664
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=9.7e-16 Score=153.65 Aligned_cols=155 Identities=23% Similarity=0.273 Sum_probs=75.1
Q ss_pred cCcccEEEcCCCCCCccccc-cc---cccccccccccccccccc-ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEE
Q 006018 488 LDSLKELYLGGCSNLKRFPE-IS---CNIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRL 562 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~-~~---~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 562 (664)
+++|+.|++++|... .+|. .+ .+|+.|++++|.+..+|. .+..+++|++|++++|......+..+..+++|++|
T Consensus 60 l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp CTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 555555555555432 2222 11 145555555555555543 23455555555555544333333344555555555
Q ss_pred eeeCCCCCCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCcccc
Q 006018 563 NLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLS 641 (664)
Q Consensus 563 ~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ 641 (664)
+|++|.+....+..+..+++|++|++++|.++.+|.. +.++++|+.|+|++|++.. +|.. .+..+++|+.|+
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~------~~~~l~~L~~L~ 211 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEG------AFDSLEKLKMLQ 211 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTT------TTTTCTTCCEEE
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHH------HhccccCCCEEE
Confidence 5555553332222345555555555555555555432 4555555555555554332 2221 234455666666
Q ss_pred CCCcccccC
Q 006018 642 NSSTLLTRS 650 (664)
Q Consensus 642 ls~N~l~~~ 650 (664)
+++|+++..
T Consensus 212 l~~N~~~c~ 220 (270)
T 2o6q_A 212 LQENPWDCT 220 (270)
T ss_dssp CCSSCBCCS
T ss_pred ecCCCeeCC
Confidence 666665543
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.66 E-value=1.9e-16 Score=182.64 Aligned_cols=167 Identities=24% Similarity=0.312 Sum_probs=141.6
Q ss_pred cCCCcc-CcCcccEEEcCCCCCCcccccccc---ccccccccccccc-ccccccCCCCCCcEEeecCCCCCCcccc----
Q 006018 481 SLPTGI-NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIE-ELPSSIGNLSRLVDLDLTNCSGLKSVSS---- 551 (664)
Q Consensus 481 ~lp~~~-~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~---- 551 (664)
.+|..+ .+++|+.|++++|...+.+|..+. +|+.|++++|.+. .+|..++.+++|+.|++++|.....+|.
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 345544 488889999999888778887655 7888899999887 7788888999999999998866544443
Q ss_pred ------------------------------------------------------------------ccCCCCCCCEEeee
Q 006018 552 ------------------------------------------------------------------RLCNLKSLRRLNLS 565 (664)
Q Consensus 552 ------------------------------------------------------------------~~~~l~~L~~L~L~ 565 (664)
.+..+++|+.|+|+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs 640 (768)
T 3rgz_A 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640 (768)
T ss_dssp TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECC
T ss_pred ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECc
Confidence 24446789999999
Q ss_pred CCCCCCccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCC
Q 006018 566 GCLKLEKLPEEIGNLESLEYLNLAEKDFE-KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSS 644 (664)
Q Consensus 566 ~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~ 644 (664)
+|.+.+.+|..++++++|+.|+|++|.++ .+|..++++++|+.|+|++|++.+.+|. .+..+++|+.|++++
T Consensus 641 ~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-------~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-------AMSALTMLTEIDLSN 713 (768)
T ss_dssp SSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-------GGGGCCCCSEEECCS
T ss_pred CCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh-------HHhCCCCCCEEECcC
Confidence 99988899999999999999999999998 7899999999999999999999999998 788999999999999
Q ss_pred cccccCCCCC
Q 006018 645 TLLTRSSKHW 654 (664)
Q Consensus 645 N~l~~~~~~~ 654 (664)
|+++|.+|..
T Consensus 714 N~l~g~iP~~ 723 (768)
T 3rgz_A 714 NNLSGPIPEM 723 (768)
T ss_dssp SEEEEECCSS
T ss_pred CcccccCCCc
Confidence 9999998875
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.66 E-value=8.1e-16 Score=155.56 Aligned_cols=158 Identities=22% Similarity=0.237 Sum_probs=109.1
Q ss_pred CcCcccEEEcCCCCCCcccccccc---ccccccccccc-cccc-ccccCCCCCCcEEeecCCCCCCccccccCCCCCCCE
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETA-IEEL-PSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRR 561 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 561 (664)
.+++|+.|++++|......|..+. +|+.|++++|. +..+ |..+..+++|++|++++|......|..+.++++|++
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 367777777777765444344333 67777777775 6666 446677777777777776655555566777777777
Q ss_pred EeeeCCCCCCccccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccc
Q 006018 562 LNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTL 640 (664)
Q Consensus 562 L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L 640 (664)
|++++|.+....+..+..+++|++|++++|.++.+|. .+..+++|+.|++++|.+....|. .+..+++|+.|
T Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L 206 (285)
T 1ozn_A 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-------AFRDLGRLMTL 206 (285)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-------TTTTCTTCCEE
T ss_pred EECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh-------HccCcccccEe
Confidence 7777777554444456777777777777777777765 367777777777777776655555 46678888889
Q ss_pred cCCCcccccCC
Q 006018 641 SNSSTLLTRSS 651 (664)
Q Consensus 641 ~ls~N~l~~~~ 651 (664)
++++|.+++..
T Consensus 207 ~l~~n~l~~~~ 217 (285)
T 1ozn_A 207 YLFANNLSALP 217 (285)
T ss_dssp ECCSSCCSCCC
T ss_pred eCCCCcCCcCC
Confidence 99988887654
No 21
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.66 E-value=1.3e-16 Score=163.54 Aligned_cols=165 Identities=18% Similarity=0.260 Sum_probs=110.2
Q ss_pred cCCCcc-CcCcccEEEcCCCCCCcccccccc---ccccccccccccc-ccccccCCCCCCcEEeecCCCCCCccccccCC
Q 006018 481 SLPTGI-NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIE-ELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCN 555 (664)
Q Consensus 481 ~lp~~~-~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 555 (664)
.+|..+ ++++|+.|++++|...+.+|..+. +|+.|++++|.+. .+|..+..+++|++|++++|.....+|..+..
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 171 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC
T ss_pred cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh
Confidence 344444 366677777776665555555443 5666777777766 56666666777777777766555466666666
Q ss_pred CC-CCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeC
Q 006018 556 LK-SLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFE-KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARH 633 (664)
Q Consensus 556 l~-~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~ 633 (664)
++ +|++|++++|.+.+.+|..+..+. |++|++++|.+. ..|..+..+++|+.|++++|.+....|. +..
T Consensus 172 l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------~~~ 242 (313)
T 1ogq_A 172 FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK--------VGL 242 (313)
T ss_dssp CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--------CCC
T ss_pred hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--------ccc
Confidence 66 677777777665556666666665 777777777666 3455667777777777777766555544 456
Q ss_pred CCCCccccCCCcccccCCCCC
Q 006018 634 CTSLKTLSNSSTLLTRSSKHW 654 (664)
Q Consensus 634 ~~~L~~L~ls~N~l~~~~~~~ 654 (664)
+++|+.|++++|.+++..|.+
T Consensus 243 l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 243 SKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp CTTCCEEECCSSCCEECCCGG
T ss_pred cCCCCEEECcCCcccCcCChH
Confidence 789999999999998776654
No 22
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.65 E-value=6.7e-16 Score=156.16 Aligned_cols=159 Identities=20% Similarity=0.211 Sum_probs=118.1
Q ss_pred CcCcccEEEcCCCCCCccc-ccccc---cccccccccccccccc-cccCCCCCCcEEeecCCCCCCccccccCCCCCCCE
Q 006018 487 NLDSLKELYLGGCSNLKRF-PEISC---NIEDLDLKETAIEELP-SSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRR 561 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~-p~~~~---~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 561 (664)
.+++|+.|++++|..+..+ |..+. +|+.|++++|.+..++ ..+..+++|++|++++|......+..+..+++|++
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 4788888888888744444 43333 7888888888888774 46778888888888886655444455788888888
Q ss_pred EeeeCCCCCCccccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccc
Q 006018 562 LNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTL 640 (664)
Q Consensus 562 L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L 640 (664)
|++++|.+....+..+..+++|++|++++|.+..+ |..+.++++|+.|++++|++....+. .+..+++|+.|
T Consensus 158 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L 230 (285)
T 1ozn_A 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE-------ALAPLRALQYL 230 (285)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH-------HHTTCTTCCEE
T ss_pred EECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH-------HcccCcccCEE
Confidence 88888875444444588888888888888888866 66788888888888888766543333 46678888888
Q ss_pred cCCCcccccCCC
Q 006018 641 SNSSTLLTRSSK 652 (664)
Q Consensus 641 ~ls~N~l~~~~~ 652 (664)
++++|+++...+
T Consensus 231 ~l~~N~~~c~~~ 242 (285)
T 1ozn_A 231 RLNDNPWVCDCR 242 (285)
T ss_dssp ECCSSCEECSGG
T ss_pred eccCCCccCCCC
Confidence 888888875433
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.64 E-value=2.4e-15 Score=152.22 Aligned_cols=161 Identities=22% Similarity=0.206 Sum_probs=87.1
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCcccccccc---cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccC
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLC 554 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~ 554 (664)
..+.+|..+. ++++.|++++|.+....+..+. +|+.|++++|.++.++.. +.+++|++|++++| .+..+|..+.
T Consensus 21 ~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~ 97 (290)
T 1p9a_G 21 NLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQ 97 (290)
T ss_dssp CCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTT
T ss_pred CCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhhc
Confidence 3445555442 4566666666654433333332 556666666666655543 55666666666653 3345555555
Q ss_pred CCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeC
Q 006018 555 NLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARH 633 (664)
Q Consensus 555 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~ 633 (664)
.+++|++|++++|.+.+..|..+.++++|++|+|++|.++.+|.. +..+++|+.|+|++|++. .+|.. .+.+
T Consensus 98 ~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~------~~~~ 170 (290)
T 1p9a_G 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAG------LLNG 170 (290)
T ss_dssp TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTT------TTTT
T ss_pred cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHH------HhcC
Confidence 666666666666654433334556666666666666666655543 355666666666665433 33321 2344
Q ss_pred CCCCccccCCCcccc
Q 006018 634 CTSLKTLSNSSTLLT 648 (664)
Q Consensus 634 ~~~L~~L~ls~N~l~ 648 (664)
+++|+.|++++|.|+
T Consensus 171 l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 171 LENLDTLLLQENSLY 185 (290)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred cCCCCEEECCCCcCC
Confidence 555555555555555
No 24
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.64 E-value=5.9e-16 Score=178.62 Aligned_cols=167 Identities=23% Similarity=0.284 Sum_probs=143.1
Q ss_pred cCCCcc-CcCcccEEEcCCCCCCcccccccc---ccccccccccccc-ccccccCCCCCCcEEeecCCCCCCccccccCC
Q 006018 481 SLPTGI-NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIE-ELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCN 555 (664)
Q Consensus 481 ~lp~~~-~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 555 (664)
.+|..+ .+++|+.|++++|...+.+|..+. +|+.|++++|.+. .+|..++.+++|++|++++|.....+|..+..
T Consensus 457 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 536 (768)
T 3rgz_A 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG
T ss_pred cCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 445544 488899999999988877877655 7889999999998 78888999999999999998888889989999
Q ss_pred CCCCCEEeeeCCCCCCccccc-----------------------------------------------------------
Q 006018 556 LKSLRRLNLSGCLKLEKLPEE----------------------------------------------------------- 576 (664)
Q Consensus 556 l~~L~~L~L~~~~~~~~~p~~----------------------------------------------------------- 576 (664)
+++|+.|++++|.+.+.+|..
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 999999999998876666643
Q ss_pred -----------cCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCC
Q 006018 577 -----------IGNLESLEYLNLAEKDFE-KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSS 644 (664)
Q Consensus 577 -----------l~~l~~L~~L~l~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~ 644 (664)
++.+++|+.|+|++|.++ .+|..++++++|+.|+|++|++.+.+|. .++++++|+.||+++
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-------~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-------EVGDLRGLNILDLSS 689 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-------GGGGCTTCCEEECCS
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-------HHhCCCCCCEEECCC
Confidence 334578999999999998 7899999999999999999999999998 789999999999999
Q ss_pred cccccCCCCC
Q 006018 645 TLLTRSSKHW 654 (664)
Q Consensus 645 N~l~~~~~~~ 654 (664)
|+++|.+|..
T Consensus 690 N~l~g~ip~~ 699 (768)
T 3rgz_A 690 NKLDGRIPQA 699 (768)
T ss_dssp SCCEECCCGG
T ss_pred CcccCcCChH
Confidence 9999988754
No 25
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=1.5e-15 Score=147.19 Aligned_cols=153 Identities=17% Similarity=0.134 Sum_probs=123.7
Q ss_pred cEEEcCCCCCCcccccccc-ccccccccccccccccc--ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCC
Q 006018 492 KELYLGGCSNLKRFPEISC-NIEDLDLKETAIEELPS--SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCL 568 (664)
Q Consensus 492 ~~L~l~~~~~~~~~p~~~~-~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~ 568 (664)
+.+++++|. +..+|..+. .++.|++++|.++.+++ .+..+++|+.|+|++|......+..+.++++|++|+|++|.
T Consensus 14 ~~l~~s~n~-l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCC-cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 578888876 445665544 78899999999998843 37889999999999876554445578999999999999998
Q ss_pred CCCccccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCccc
Q 006018 569 KLEKLPEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLL 647 (664)
Q Consensus 569 ~~~~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l 647 (664)
+.+..|..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|.+....|. .+..+++|+.|++++|++
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-------AFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT-------TTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH-------HhcCCCCCCEEEecCcCC
Confidence 7666666789999999999999999977 56788999999999999887776676 577889999999999998
Q ss_pred ccCCC
Q 006018 648 TRSSK 652 (664)
Q Consensus 648 ~~~~~ 652 (664)
++..+
T Consensus 166 ~c~c~ 170 (220)
T 2v70_A 166 NCNCY 170 (220)
T ss_dssp ECSGG
T ss_pred cCCCc
Confidence 75443
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=3.1e-15 Score=150.11 Aligned_cols=158 Identities=21% Similarity=0.251 Sum_probs=131.9
Q ss_pred CcCcccEEEcCCCCCCccccccc--ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEee
Q 006018 487 NLDSLKELYLGGCSNLKRFPEIS--CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNL 564 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 564 (664)
.+++|+.|++++|. +..++... .+|+.|++++|.+..++ .+..+++|++|++++|......+..+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 47889999999986 44455433 38999999999999875 7889999999999998665555556899999999999
Q ss_pred eCCCCCCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCC
Q 006018 565 SGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNS 643 (664)
Q Consensus 565 ~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls 643 (664)
++|.+.+..|..++.+++|++|++++|.++.+|.. +..+++|+.|++++|++....|. .+.++++|+.|+++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-------VFDKLTQLKDLRLY 189 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECC
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH-------HhcCCccCCEEECC
Confidence 99997666666689999999999999999988765 58999999999999977654444 46789999999999
Q ss_pred CcccccCCCC
Q 006018 644 STLLTRSSKH 653 (664)
Q Consensus 644 ~N~l~~~~~~ 653 (664)
+|.+++..|.
T Consensus 190 ~N~l~~~~~~ 199 (272)
T 3rfs_A 190 QNQLKSVPDG 199 (272)
T ss_dssp SSCCSCCCTT
T ss_pred CCcCCccCHH
Confidence 9999976654
No 27
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=3.8e-15 Score=147.59 Aligned_cols=156 Identities=25% Similarity=0.277 Sum_probs=131.4
Q ss_pred CcccEEEcCCCCCCcccccccc-ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeC
Q 006018 489 DSLKELYLGGCSNLKRFPEISC-NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSG 566 (664)
Q Consensus 489 ~~L~~L~l~~~~~~~~~p~~~~-~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~ 566 (664)
.+.+.++++++. +..+|..+. +++.|++++|.+..+++ .+..+++|++|+|++|......|..+..+++|++|+|++
T Consensus 14 ~~~~~l~~~~~~-l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 14 EGKKEVDCQGKS-LDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGGTEEECTTCC-CSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCCeEEecCCCC-ccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 457789999886 456665444 89999999999998776 688999999999999876666666789999999999999
Q ss_pred CCCCCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCc
Q 006018 567 CLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSST 645 (664)
Q Consensus 567 ~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N 645 (664)
|.+....|..+..+++|++|+|++|.++.+|.. +..+++|+.|+|++|.+....+. .+.++++|+.|++++|
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAG-------AFDKLTNLQTLSLSTN 165 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------TTTTCTTCCEEECCSS
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHH-------HcCcCcCCCEEECCCC
Confidence 997666667789999999999999999999875 58899999999999876544443 4678899999999999
Q ss_pred ccccCCC
Q 006018 646 LLTRSSK 652 (664)
Q Consensus 646 ~l~~~~~ 652 (664)
.|++..+
T Consensus 166 ~l~~~~~ 172 (251)
T 3m19_A 166 QLQSVPH 172 (251)
T ss_dssp CCSCCCT
T ss_pred cCCccCH
Confidence 9987655
No 28
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.62 E-value=2.9e-15 Score=146.13 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=117.8
Q ss_pred ccEEEcCCCCCCccccccc-cccccccccccccccc-ccccCCCCCCcEEeecCCCCCCccc-cccCCCCCCCEEeeeCC
Q 006018 491 LKELYLGGCSNLKRFPEIS-CNIEDLDLKETAIEEL-PSSIGNLSRLVDLDLTNCSGLKSVS-SRLCNLKSLRRLNLSGC 567 (664)
Q Consensus 491 L~~L~l~~~~~~~~~p~~~-~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~~ 567 (664)
.+.++.+++. +..+|... .+|+.|+|++|.+..+ |..+..+++|++|+|++|.. ..+| ..+..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~-l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKR-HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCC-cCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCCC
Confidence 4567776654 45556543 3888888888888877 45678899999999998664 4554 45688999999999998
Q ss_pred CCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCccc
Q 006018 568 LKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLL 647 (664)
Q Consensus 568 ~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l 647 (664)
.+....+..+..+++|++|+|++|.++.+|..+..+++|+.|+|++|++....+. .+..+++|+.|++++|++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG-------AFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTT-------TTTTCTTCCEEECTTSCB
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHH-------HHhCCCCCCEEEeeCCCc
Confidence 8655545557889999999999999999998899999999999999766533333 467788999999999998
Q ss_pred ccCCC
Q 006018 648 TRSSK 652 (664)
Q Consensus 648 ~~~~~ 652 (664)
+...+
T Consensus 172 ~c~c~ 176 (229)
T 3e6j_A 172 DCECR 176 (229)
T ss_dssp CTTBG
T ss_pred cCCcc
Confidence 86554
No 29
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.5e-15 Score=144.51 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=125.7
Q ss_pred CcCcccEEEcCCCCCCccccccc--ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEee
Q 006018 487 NLDSLKELYLGGCSNLKRFPEIS--CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNL 564 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 564 (664)
++++|+.|++++|... .+|... .+|+.|++++|.++.++ .+..+++|++|++++|......|..+..+++|++|++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred hcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 4788999999998754 556322 28999999999887765 6889999999999998776667888999999999999
Q ss_pred eCCCCCCccccccCCCCCCCEEEccCCC-CccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCC
Q 006018 565 SGCLKLEKLPEEIGNLESLEYLNLAEKD-FEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNS 643 (664)
Q Consensus 565 ~~~~~~~~~p~~l~~l~~L~~L~l~~n~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls 643 (664)
++|.+....|..+..+++|++|++++|. ++.+| .+..+++|+.|++++|.+.. ++. +..+++|+.|+++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~~--------l~~l~~L~~L~l~ 189 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRG--------IEDFPKLNQLYAF 189 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CTT--------GGGCSSCCEEEEC
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hHH--------hccCCCCCEEEee
Confidence 9999877788899999999999999998 88887 69999999999999987643 443 6788999999999
Q ss_pred Cccccc
Q 006018 644 STLLTR 649 (664)
Q Consensus 644 ~N~l~~ 649 (664)
+|++.+
T Consensus 190 ~N~i~~ 195 (197)
T 4ezg_A 190 SQTIGG 195 (197)
T ss_dssp BC----
T ss_pred CcccCC
Confidence 999875
No 30
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=4.4e-15 Score=142.62 Aligned_cols=162 Identities=20% Similarity=0.216 Sum_probs=129.2
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCccccccc---ccccccccccccccccccc-cCCCCCCcEEeecCCCCCCcccccc
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEIS---CNIEDLDLKETAIEELPSS-IGNLSRLVDLDLTNCSGLKSVSSRL 553 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~---~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~ 553 (664)
....+|..+ .++|+.|++++|......+..+ .+|+.|++++|.++.+|.. +..+++|++|++++|......+..+
T Consensus 18 ~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 18 GRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp CCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 344566544 4689999999997654444333 3899999999999988875 5789999999999876554444457
Q ss_pred CCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEEeee
Q 006018 554 CNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSIHAR 632 (664)
Q Consensus 554 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~ 632 (664)
..+++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|+.. .
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------------~ 162 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------------C 162 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------------C
T ss_pred cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------------c
Confidence 8999999999999986655555678999999999999999988765 688999999999998543 3
Q ss_pred CCCCCccccCCCcccccCCCCC
Q 006018 633 HCTSLKTLSNSSTLLTRSSKHW 654 (664)
Q Consensus 633 ~~~~L~~L~ls~N~l~~~~~~~ 654 (664)
.|++|+.|+++.|.++|.+|.+
T Consensus 163 ~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp CTTTTHHHHHHHHHCTTTBBCT
T ss_pred CCCCHHHHHHHHHhCCceeecc
Confidence 4678999999999999999876
No 31
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=1.1e-14 Score=146.04 Aligned_cols=169 Identities=22% Similarity=0.247 Sum_probs=137.1
Q ss_pred cccCccCCCccCcCcccEEEcCCCCCCcccccccc---cccccccccccccccccc-cCCCCCCcEEeecCCCCCCcccc
Q 006018 476 LNENTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSS-IGNLSRLVDLDLTNCSGLKSVSS 551 (664)
Q Consensus 476 ~~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~ 551 (664)
-+..+.+|..+. ++++.|++++|......+..+. +|+.|++++|.++.+|.. +..+++|++|++++|......+.
T Consensus 25 ~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 103 (270)
T 2o6q_A 25 SKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG 103 (270)
T ss_dssp TSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence 344556776553 6899999999975544333333 899999999999999876 47899999999999765544445
Q ss_pred ccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEEe
Q 006018 552 RLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSIH 630 (664)
Q Consensus 552 ~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~ 630 (664)
.+..+++|++|++++|.+....|..+..+++|++|++++|.++.+|.. +..+++|+.|+|++|.+....+. .
T Consensus 104 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~ 176 (270)
T 2o6q_A 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG-------A 176 (270)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-------T
T ss_pred HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh-------H
Confidence 678999999999999997766667789999999999999999998865 78999999999999876554443 4
Q ss_pred eeCCCCCccccCCCcccccCCC
Q 006018 631 ARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 631 ~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
+.++++|+.|++++|.+++..+
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCT
T ss_pred hccCCCcCEEECCCCcCCcCCH
Confidence 6778999999999999986544
No 32
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=2.5e-15 Score=153.62 Aligned_cols=135 Identities=23% Similarity=0.344 Sum_probs=81.2
Q ss_pred ccccccccccccccccc--ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCC-ccccccCCCCCCCEEE
Q 006018 511 NIEDLDLKETAIEELPS--SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLE-KLPEEIGNLESLEYLN 587 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~ 587 (664)
+|+.|++++|.+..++. .+..+++|++|++++|......|..+..+++|++|++++|.+.+ .+|..+..+++|++|+
T Consensus 102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 181 (306)
T 2z66_A 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181 (306)
T ss_dssp TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence 45555555555555443 45555566666666554444444455566666666666665433 3555666666666666
Q ss_pred ccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCC
Q 006018 588 LAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 588 l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
+++|.++.+ |..+..+++|+.|++++|.+....+. .+..+++|+.|++++|.+++..|
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-------PYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG-------GGTTCTTCCEEECTTSCCCBCSS
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh-------hccCcccCCEeECCCCCCcccCH
Confidence 666666655 44556666666666666554332222 35667889999999998887654
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.60 E-value=3e-15 Score=152.98 Aligned_cols=165 Identities=21% Similarity=0.242 Sum_probs=132.4
Q ss_pred cCCCcc-CcCcccEEEcCCCCCCcccc-ccc---cccccccccccccccc-ccccCCCCCCcEEeecCCCCCC-cccccc
Q 006018 481 SLPTGI-NLDSLKELYLGGCSNLKRFP-EIS---CNIEDLDLKETAIEEL-PSSIGNLSRLVDLDLTNCSGLK-SVSSRL 553 (664)
Q Consensus 481 ~lp~~~-~l~~L~~L~l~~~~~~~~~p-~~~---~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~-~lp~~~ 553 (664)
.+|..+ .+++|+.|++++|......+ ..+ .+|+.|++++|.+..+ |..+..+++|++|++++|.... .+|..+
T Consensus 92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 171 (306)
T 2z66_A 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171 (306)
T ss_dssp EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence 444433 48899999999986433222 122 3899999999998855 4567889999999999876554 478889
Q ss_pred CCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCCCcCCCCCCCCEEeee
Q 006018 554 CNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHAR 632 (664)
Q Consensus 554 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~ 632 (664)
..+++|++|++++|.+.+..|..+..+++|++|++++|.++.+|. .+..+++|+.|++++|++.+..|. .+.
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~ 244 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-------ELQ 244 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS-------SCC
T ss_pred hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH-------HHH
Confidence 999999999999998777668889999999999999999998865 678899999999999988877776 566
Q ss_pred CC-CCCccccCCCcccccCCC
Q 006018 633 HC-TSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 633 ~~-~~L~~L~ls~N~l~~~~~ 652 (664)
.+ ++|+.|++++|++++..+
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGG
T ss_pred hhhccCCEEEccCCCeecccC
Confidence 66 489999999999986543
No 34
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=6.4e-15 Score=142.74 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=111.9
Q ss_pred cEEEcCCCCCCcccccccc-ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCC
Q 006018 492 KELYLGGCSNLKRFPEISC-NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLK 569 (664)
Q Consensus 492 ~~L~l~~~~~~~~~p~~~~-~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 569 (664)
+.++++++. +..+|.... +++.|++++|.++.+|+ .+..+++|+.|+|++|......|..+.++++|++|+|++|.+
T Consensus 14 ~~v~c~~~~-l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKG-LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSC-CSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCC-cCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 467777664 445555443 78888888888887776 677888888888888766555577888888888888888875
Q ss_pred CCccccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccc
Q 006018 570 LEKLPEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 570 ~~~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~ 648 (664)
....+..+.++++|++|+|++|.++.+ |..+..+++|+.|+|++|++....+. .+..+++|+.|++++|+++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-------TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-------TTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH-------HHhCCCCCCEEEeCCCCcC
Confidence 433334467888888888888888877 45678888888888888776554444 4667788888888888876
Q ss_pred c
Q 006018 649 R 649 (664)
Q Consensus 649 ~ 649 (664)
.
T Consensus 166 c 166 (220)
T 2v9t_B 166 C 166 (220)
T ss_dssp C
T ss_pred C
Confidence 4
No 35
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=5.8e-15 Score=148.47 Aligned_cols=163 Identities=23% Similarity=0.185 Sum_probs=81.0
Q ss_pred cccEEEcCCCCCCcccccccc---ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeee
Q 006018 490 SLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLS 565 (664)
Q Consensus 490 ~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~ 565 (664)
+|+.|++++|......+..+. +|+.|++++|.+..++. .+..+++|++|++++|......+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 455555555543322221221 45555555555555443 34555555555555544333333445555555555555
Q ss_pred CCCCCCccccccCCCCCCCEEEccCCCCcc--ccccccCCCCCCEEeecCCCCCCcCCC-------CCCCC-EEe-----
Q 006018 566 GCLKLEKLPEEIGNLESLEYLNLAEKDFEK--IPSSMKQLSKLSDLRLQNCKRLQSLPE-------LPCGS-SIH----- 630 (664)
Q Consensus 566 ~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~-------l~~~~-~l~----- 630 (664)
+|.+....+..++.+++|++|++++|.++. +|..+.++++|++|++++|++....+. ++... .+.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 555433333345555555555555555553 345555555555555555543321111 00000 111
Q ss_pred -------eeCCCCCccccCCCcccccCCC
Q 006018 631 -------ARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 631 -------~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
.....+|+.|++++|.+++..+
T Consensus 189 l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 217 (276)
T 2z62_A 189 MNFIQPGAFKEIRLKELALDTNQLKSVPD 217 (276)
T ss_dssp CCEECTTSSCSCCEEEEECCSSCCSCCCT
T ss_pred ccccCccccCCCcccEEECCCCceeecCH
Confidence 1223479999999999886544
No 36
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=1e-14 Score=157.06 Aligned_cols=157 Identities=25% Similarity=0.300 Sum_probs=105.8
Q ss_pred CcCcccEEEcCCCCCCcccccccc---ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCcccc-ccCCCCCCCE
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSS-RLCNLKSLRR 561 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~ 561 (664)
.+++|+.|++++|.+....+..+. +|+.|++++|.++.+|. .+..+++|+.|++++|+.+..++. .+.++++|++
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 367777777777754432222222 67777777777776665 566777777777777666666654 4667777777
Q ss_pred EeeeCCCCCCccccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccc
Q 006018 562 LNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTL 640 (664)
Q Consensus 562 L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L 640 (664)
|+|++|. +..+| .+..+++|++|+|++|.++.+ |..+.++++|+.|+|++|.+....|. .+.++++|+.|
T Consensus 190 L~L~~n~-l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L 260 (440)
T 3zyj_A 190 LNLAMCN-LREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERN-------AFDNLQSLVEI 260 (440)
T ss_dssp EECTTSC-CSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-------SSTTCTTCCEE
T ss_pred ecCCCCc-Ccccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChh-------hhcCCCCCCEE
Confidence 7777776 34555 466777777777777777765 45667777777777777666555444 46677788888
Q ss_pred cCCCcccccCCC
Q 006018 641 SNSSTLLTRSSK 652 (664)
Q Consensus 641 ~ls~N~l~~~~~ 652 (664)
++++|.|+...+
T Consensus 261 ~L~~N~l~~~~~ 272 (440)
T 3zyj_A 261 NLAHNNLTLLPH 272 (440)
T ss_dssp ECTTSCCCCCCT
T ss_pred ECCCCCCCccCh
Confidence 888888775544
No 37
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.60 E-value=3.7e-15 Score=155.31 Aligned_cols=273 Identities=14% Similarity=0.155 Sum_probs=162.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhh-------------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDES------------- 223 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~------------- 223 (664)
....|+||+.++++|.+++..+ +++.|+|++|+|||+|+++++++.. .+|+. .....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCHHHHHH
Confidence 6678999999999999998642 6899999999999999999998742 33332 11110
Q ss_pred ---hcc-----------------c---chhHHh----HHHHHHHhcC-ceEEEEEecCCCHH---------HHHHHhccC
Q 006018 224 ---EKV-----------------G---GLANIH----LNFERRRLSR-MKVLIVFYDLTDLK---------QIDLLIGRL 266 (664)
Q Consensus 224 ---~~~-----------------~---~l~~~~----l~~~~~~L~~-~~~LlVlDdv~~~~---------~~~~l~~~~ 266 (664)
... + ...... ++.+.+.... ++++|||||++... .+..+....
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 000 0 000011 2233333332 38999999997632 233332221
Q ss_pred CCCCCCcEEEEEeCCHHHHHhh----c--C---CccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhc
Q 006018 267 DGFVPGSRVIITTRDVQLLKNH----R--G---SRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYAN 337 (664)
Q Consensus 267 ~~~~~gs~IliTtR~~~~~~~~----~--~---~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~ 337 (664)
.. .++.++|+|++........ . . ......+.+.+|+.+|+.+++....-..... ...+.+..+++.++
T Consensus 160 ~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~tg 236 (350)
T 2qen_A 160 DS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELLD 236 (350)
T ss_dssp HH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHT
T ss_pred Hh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhC
Confidence 11 2477899999876543221 1 0 0123479999999999999998754211111 12356788999999
Q ss_pred CCchhHHHHhhhcCC-CCHHHHHH-HHHHhhcCCCCcccceeeeecCCCChhhhhhhhhcccccCCCCHHHHHHHHHHc-
Q 006018 338 GVPLALQVLGSYLKG-MSEEEWES-AVNKLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTACFFKGNDQYLVMNFLDAC- 414 (664)
Q Consensus 338 glPLal~~~a~~l~~-~~~~~w~~-~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la~f~~~~~~~~~~~~~~~~- 414 (664)
|+|+++..++..+.. .+...+.. ..+.........+.. +.+ . ++..+.++..+|+ .......+...+...
T Consensus 237 G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---l~~-~-~~~~~~~l~~la~--g~~~~~~l~~~~~~~~ 309 (350)
T 2qen_A 237 GIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEE---LRR-R-SPRYVDILRAIAL--GYNRWSLIRDYLAVKG 309 (350)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHH-H-CHHHHHHHHHHHT--TCCSHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHH---HHh-C-ChhHHHHHHHHHh--CCCCHHHHHHHHHHHh
Confidence 999999998875421 23222211 111110000011111 111 1 6778899988887 234444555444322
Q ss_pred -CCc---cccccceecccceeeeeCCeEEe-chHHHHHHh
Q 006018 415 -RFS---AKIGISRLVGKSLVTISNNKITM-HDLLQEMGG 449 (664)
Q Consensus 415 -~~~---~~~~l~~L~~~~li~~~~~~~~m-Hdlv~~~~~ 449 (664)
+.. ....++.|.+.++|...++.|.+ |++++++.+
T Consensus 310 ~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 310 TKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 222 23458889999999987777765 788887653
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.59 E-value=5.7e-15 Score=159.09 Aligned_cols=158 Identities=25% Similarity=0.275 Sum_probs=128.6
Q ss_pred CcCcccEEEcCCCCCCcccccccc---ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEE
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRL 562 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 562 (664)
++++|+.|+|++|......+..+. +|+.|+|++|.++.+|. .+..+++|++|+|++|......+..+..+++|+.|
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 488899999999875544444333 78899999999988876 57889999999999876544444578889999999
Q ss_pred eeeCCCCCCcccc-ccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCcccc
Q 006018 563 NLSGCLKLEKLPE-EIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLS 641 (664)
Q Consensus 563 ~L~~~~~~~~~p~-~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ 641 (664)
+|++|..+..+|. .+.++++|++|++++|.++.+| .+..+++|+.|+|++|++....|. .+.++++|+.|+
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~ 237 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPG-------SFQGLMHLQKLW 237 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTT-------TTTTCTTCCEEE
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChh-------hhccCccCCEEE
Confidence 9998777777765 5888999999999999999988 588899999999999877766666 578899999999
Q ss_pred CCCcccccCCC
Q 006018 642 NSSTLLTRSSK 652 (664)
Q Consensus 642 ls~N~l~~~~~ 652 (664)
+++|.+++..+
T Consensus 238 L~~n~l~~~~~ 248 (440)
T 3zyj_A 238 MIQSQIQVIER 248 (440)
T ss_dssp CTTCCCCEECT
T ss_pred CCCCceeEECh
Confidence 99999987644
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.59 E-value=1.3e-14 Score=156.82 Aligned_cols=157 Identities=26% Similarity=0.291 Sum_probs=113.5
Q ss_pred CcCcccEEEcCCCCCCcccccccc---ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCcccc-ccCCCCCCCE
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSS-RLCNLKSLRR 561 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~ 561 (664)
.+++|+.|+|++|.+....+..+. +|+.|+|++|.++.+|. .+..+++|+.|++++|+.+..++. .+.++++|++
T Consensus 121 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 200 (452)
T 3zyi_A 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKY 200 (452)
T ss_dssp TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCE
T ss_pred CcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCE
Confidence 377888888888765433333232 77888888888887765 567788888888887777777664 4777888888
Q ss_pred EeeeCCCCCCccccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccc
Q 006018 562 LNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTL 640 (664)
Q Consensus 562 L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L 640 (664)
|+|++|.+ ..+| .+..+++|++|+|++|.++.+ |..+.++++|+.|+|++|.+....|. .+.++++|+.|
T Consensus 201 L~L~~n~l-~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L 271 (452)
T 3zyi_A 201 LNLGMCNI-KDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN-------AFDGLASLVEL 271 (452)
T ss_dssp EECTTSCC-SSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT-------TTTTCTTCCEE
T ss_pred EECCCCcc-cccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH-------HhcCCCCCCEE
Confidence 88888774 3444 467778888888888888766 55677888888888888776655555 46677888888
Q ss_pred cCCCcccccCCC
Q 006018 641 SNSSTLLTRSSK 652 (664)
Q Consensus 641 ~ls~N~l~~~~~ 652 (664)
++++|.|++..+
T Consensus 272 ~L~~N~l~~~~~ 283 (452)
T 3zyi_A 272 NLAHNNLSSLPH 283 (452)
T ss_dssp ECCSSCCSCCCT
T ss_pred ECCCCcCCccCh
Confidence 888888775443
No 40
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.58 E-value=8.2e-15 Score=140.68 Aligned_cols=158 Identities=20% Similarity=0.173 Sum_probs=126.8
Q ss_pred cEEEcCCCCCCccccccc-ccccccccccccccccccc-cCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCC
Q 006018 492 KELYLGGCSNLKRFPEIS-CNIEDLDLKETAIEELPSS-IGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLK 569 (664)
Q Consensus 492 ~~L~l~~~~~~~~~p~~~-~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 569 (664)
+.++.+++. +..+|... .+|+.|++++|.++.++.. +..+++|++|++++|......+..+..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQG-RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSC-CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCC-ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 467777765 34455443 4899999999999988874 68999999999999765444444578999999999999986
Q ss_pred CCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccc
Q 006018 570 LEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 570 ~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~ 648 (664)
....+..+..+++|++|++++|.++.+|.. +..+++|+.|++++|.+....+. .+..+++|+.|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG-------VFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-------TTTTCTTCCEEECCSCCBC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH-------HhccCCCccEEEecCCCee
Confidence 655455679999999999999999988765 68999999999999876543333 4677899999999999999
Q ss_pred cCCCCCceE
Q 006018 649 RSSKHWDIF 657 (664)
Q Consensus 649 ~~~~~~~~~ 657 (664)
+..|....+
T Consensus 162 ~~~~~l~~L 170 (208)
T 2o6s_A 162 CTCPGIRYL 170 (208)
T ss_dssp CCTTTTHHH
T ss_pred cCCCCHHHH
Confidence 888765443
No 41
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.58 E-value=7.2e-15 Score=158.87 Aligned_cols=168 Identities=25% Similarity=0.261 Sum_probs=128.4
Q ss_pred CcCcccEEEcCCCCCCcccccccc---cccccccccccccccccc-cCCCCCCcEEeecCCCCCCccccccCCCCCCCEE
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSS-IGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRL 562 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 562 (664)
++++|+.|++++|......+..+. +|+.|+|++|.++.+|.. +..+++|++|+|++|......+..+.++++|+.|
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 478888888888876554444433 788888888888887764 7778888888888865443334467888888888
Q ss_pred eeeCCCCCCcccc-ccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCcccc
Q 006018 563 NLSGCLKLEKLPE-EIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLS 641 (664)
Q Consensus 563 ~L~~~~~~~~~p~-~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ 641 (664)
++++|..++.+|. .+.++++|++|++++|.++.+| .+..+++|+.|+|++|.+....|. .+.++++|+.|+
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~l~~L~~L~ 248 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPG-------SFHGLSSLKKLW 248 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGG-------GGTTCTTCCEEE
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcc-------cccCccCCCEEE
Confidence 8888776777765 4788889999999999998887 588888999999999877666666 678899999999
Q ss_pred CCCcccccCCC-------CCceEEccCC
Q 006018 642 NSSTLLTRSSK-------HWDIFNFSNC 662 (664)
Q Consensus 642 ls~N~l~~~~~-------~~~~~~~~~c 662 (664)
+++|.+++..| ....+++.++
T Consensus 249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 249 VMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred eCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 99999986644 3445555443
No 42
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=1.3e-14 Score=146.87 Aligned_cols=154 Identities=21% Similarity=0.175 Sum_probs=129.7
Q ss_pred CcCcccEEEcCCCCCCcccccc--cccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEee
Q 006018 487 NLDSLKELYLGGCSNLKRFPEI--SCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNL 564 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~--~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 564 (664)
.+++|+.|++++|.... ++.. ..+|+.|++++|.+..+|..+..+++|++|++++|......|..+..+++|++|+|
T Consensus 53 ~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp TCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred cCCCCCEEECCCCccCc-ccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 48999999999997543 4432 33899999999999999999999999999999997655555577999999999999
Q ss_pred eCCCCCCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCC
Q 006018 565 SGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNS 643 (664)
Q Consensus 565 ~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls 643 (664)
++|.+....+..+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|++. .+|. .+..+++|+.|+++
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~-------~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK-------GFFGSHLLPFAFLH 203 (290)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT-------TTTTTCCCSEEECC
T ss_pred CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh-------hhcccccCCeEEeC
Confidence 99986655555678999999999999999999876 478999999999997654 6776 45567899999999
Q ss_pred Cccccc
Q 006018 644 STLLTR 649 (664)
Q Consensus 644 ~N~l~~ 649 (664)
+|++..
T Consensus 204 ~Np~~C 209 (290)
T 1p9a_G 204 GNPWLC 209 (290)
T ss_dssp SCCBCC
T ss_pred CCCccC
Confidence 999864
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=3.3e-15 Score=171.92 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=85.2
Q ss_pred CCCcc---CcCcccEEEcCCCCCCcccccccc---ccccccccccc-ccc--cccccCCCC-------CCcEEeecCCCC
Q 006018 482 LPTGI---NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETA-IEE--LPSSIGNLS-------RLVDLDLTNCSG 545 (664)
Q Consensus 482 lp~~~---~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~-i~~--lp~~~~~l~-------~L~~L~l~~~~~ 545 (664)
+|+.+ ++++|+.|++++|...+.+|..+. +|+.|++++|. ++. +|..++.+. +|+.|+|++|..
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 56554 366677777777666666665444 56666666665 553 555444333 666666666544
Q ss_pred CCcccc--ccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCC-CCEEeecCCCCCCcCCC
Q 006018 546 LKSVSS--RLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSK-LSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 546 l~~lp~--~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~-L~~L~L~~~~~l~~lp~ 622 (664)
. .+|. .+.++++|+.|+|++|.+. .+| .++.+++|+.|+|++|.+..+|..+.++++ |+.|+|++|++. .+|.
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCch
Confidence 3 6665 5666666666666666644 666 666666666666666666666666666666 666666666544 4554
No 44
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.56 E-value=2.2e-15 Score=169.86 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=70.5
Q ss_pred cCcccEEEcCCCCCCcccccccc---ccccccccccc-cc--ccccccCCC------CCCcEEeecCCCCCCcccc--cc
Q 006018 488 LDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETA-IE--ELPSSIGNL------SRLVDLDLTNCSGLKSVSS--RL 553 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~-i~--~lp~~~~~l------~~L~~L~l~~~~~l~~lp~--~~ 553 (664)
+++|+.|++++|...+.+|..+. +|+.|++++|. ++ .+|..++.+ ++|++|++++|... .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 55555555555555555554433 45555555555 54 255544443 55555555554333 5554 55
Q ss_pred CCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCC-CCEEeecCCCCCCcCCC
Q 006018 554 CNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSK-LSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 554 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~-L~~L~L~~~~~l~~lp~ 622 (664)
.++++|++|++++|.+.+.+| .++.+++|++|++++|.++.+|..+.++++ |+.|++++|.+. .+|.
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 555555555555555444555 555555555555555555555555555555 555555555433 4443
No 45
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=9.5e-15 Score=152.61 Aligned_cols=273 Identities=13% Similarity=0.122 Sum_probs=160.6
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccch----------------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIR---------------- 220 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~---------------- 220 (664)
....|+||++++++|.+ +.. +++.|+|++|+|||+|+++++++.... .+|+..-.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHHHHHHHH
Confidence 66789999999999999 753 599999999999999999999886432 23332110
Q ss_pred -hhhh--------------cc-----c----ch-----hHHhHHHHHHHhcC---ceEEEEEecCCCHH-----HHHHHh
Q 006018 221 -DESE--------------KV-----G----GL-----ANIHLNFERRRLSR---MKVLIVFYDLTDLK-----QIDLLI 263 (664)
Q Consensus 221 -~~~~--------------~~-----~----~l-----~~~~l~~~~~~L~~---~~~LlVlDdv~~~~-----~~~~l~ 263 (664)
+... .. . .+ ....+..+.+.+.. ++++|||||++..+ ++..++
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 0000 00 0 00 00112333333322 48999999996532 121121
Q ss_pred ccCCCCCCCcEEEEEeCCHHHHHhh----c----C-CccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHH
Q 006018 264 GRLDGFVPGSRVIITTRDVQLLKNH----R----G-SRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIK 334 (664)
Q Consensus 264 ~~~~~~~~gs~IliTtR~~~~~~~~----~----~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~ 334 (664)
..+....++.++|+|+|........ . . ......+.+.+|+.+|+.+++...+.......+. ...+++
T Consensus 162 ~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~ 237 (357)
T 2fna_A 162 AYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYE 237 (357)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHH
T ss_pred HHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHH
Confidence 1111112467899999987543221 0 0 0113579999999999999998754211111222 178899
Q ss_pred HhcCCchhHHHHhhhcC-CCCHHHHHHH-HHHhhcCCCCcccceeeeec--CCCChhhhhhhhhcccccCCCCHHHHHHH
Q 006018 335 YANGVPLALQVLGSYLK-GMSEEEWESA-VNKLKRMPHMDIQKVLKVSY--DGLDDEEQNIFLDTACFFKGNDQYLVMNF 410 (664)
Q Consensus 335 ~~~glPLal~~~a~~l~-~~~~~~w~~~-l~~l~~~~~~~i~~~l~~sy--~~L~~~~k~~~l~la~f~~~~~~~~~~~~ 410 (664)
.++|+|+++..++..+. ..+...|... .+.........+.. +.+ ..|++..+.++..+|+ . . ....+...
T Consensus 238 ~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~~ 311 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFEN---FLHGREIARKRYLNIMRTLSK-C-G-KWSDVKRA 311 (357)
T ss_dssp HHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH---HHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHH---HhhccccccHHHHHHHHHHHc-C-C-CHHHHHHH
Confidence 99999999999887653 2233333221 11110000001111 111 1577888999999998 2 2 44545443
Q ss_pred HH-HcC--C---ccccccceecccceeeeeCCeEE-echHHHHHH
Q 006018 411 LD-ACR--F---SAKIGISRLVGKSLVTISNNKIT-MHDLLQEMG 448 (664)
Q Consensus 411 ~~-~~~--~---~~~~~l~~L~~~~li~~~~~~~~-mHdlv~~~~ 448 (664)
.. ..+ . .....++.|.+.++|...++.|. -|++++++.
T Consensus 312 ~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 312 LELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 32 223 2 23456889999999998777777 478888764
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.56 E-value=1.2e-14 Score=157.27 Aligned_cols=137 Identities=23% Similarity=0.221 Sum_probs=118.9
Q ss_pred ccccccccccccccc-ccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEcc
Q 006018 511 NIEDLDLKETAIEEL-PSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLA 589 (664)
Q Consensus 511 ~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 589 (664)
+|+.|++++|.+..+ |..+..+++|+.|++++|......|..+.++++|++|+|++|.+.+..|..+..+++|++|+++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 688899999999865 5678999999999999987776667789999999999999999776678889999999999999
Q ss_pred CCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCCCC
Q 006018 590 EKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSKHW 654 (664)
Q Consensus 590 ~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~~~ 654 (664)
+|.++.+ |..+..+++|++|+|++|++.. +|.. .+..+++|+.|++++|++++..|.+
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~------~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDG------IFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTT------TTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCcccccChhhccccccccEEECCCCcccc-CCHh------HhccCCcccEEEccCCCcccCCCcc
Confidence 9999977 6789999999999999987655 4431 4578999999999999999998854
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=6e-15 Score=151.18 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=94.0
Q ss_pred CcCcccEEEcCCCCCCccccccc--------ccccccccccccccccc-cccCCCCCCcEEeecCCCCCCc--ccccc--
Q 006018 487 NLDSLKELYLGGCSNLKRFPEIS--------CNIEDLDLKETAIEELP-SSIGNLSRLVDLDLTNCSGLKS--VSSRL-- 553 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~--------~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~--lp~~~-- 553 (664)
.+++|+.|++++|...+. |..+ .+|++|++++|.+..++ ..++.+++|++|++++|..... +|..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 366777777777765443 3221 35677777777777665 4666777777777776654433 23233
Q ss_pred CCCCCCCEEeeeCCCCCC--ccc-cccCCCCCCCEEEccCCCCcccc--ccccCCCCCCEEeecCCCCCCcCCCCCCCCE
Q 006018 554 CNLKSLRRLNLSGCLKLE--KLP-EEIGNLESLEYLNLAEKDFEKIP--SSMKQLSKLSDLRLQNCKRLQSLPELPCGSS 628 (664)
Q Consensus 554 ~~l~~L~~L~L~~~~~~~--~~p-~~l~~l~~L~~L~l~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~ 628 (664)
..+++|++|++++|.+.+ .++ ..+..+++|++|++++|.++..+ ..+..+++|+.|+|++|.+. .+|.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~------ 270 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK------ 270 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS------
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh------
Confidence 667777777777776431 222 22345667777777777776543 34455677777777776554 5554
Q ss_pred EeeeCCCCCccccCCCcccccC
Q 006018 629 IHARHCTSLKTLSNSSTLLTRS 650 (664)
Q Consensus 629 l~~~~~~~L~~L~ls~N~l~~~ 650 (664)
.+. ++|+.|++++|+|++.
T Consensus 271 -~~~--~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 271 -GLP--AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp -SCC--SEEEEEECCSSCCCSC
T ss_pred -hcc--CCceEEECCCCCCCCC
Confidence 222 6777888888877765
No 48
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.56 E-value=1.7e-14 Score=141.72 Aligned_cols=179 Identities=16% Similarity=0.197 Sum_probs=133.2
Q ss_pred ccCccCCCc-c-CcCcccEEEcCCCCCCccccc-cc---cccccccccc-cccccccc-ccCCCCCCcEEeecCCCCCCc
Q 006018 477 NENTSLPTG-I-NLDSLKELYLGGCSNLKRFPE-IS---CNIEDLDLKE-TAIEELPS-SIGNLSRLVDLDLTNCSGLKS 548 (664)
Q Consensus 477 ~~~~~lp~~-~-~l~~L~~L~l~~~~~~~~~p~-~~---~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~ 548 (664)
+....+|+. + .+++|+.|++++|..+..++. .+ .+|+.|++++ |.++.+|. .+..+++|++|++++|. +..
T Consensus 41 n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~ 119 (239)
T 2xwt_C 41 THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKM 119 (239)
T ss_dssp CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCS
T ss_pred CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccc
Confidence 344455552 3 588999999999874555554 23 2788999998 89988875 57789999999999865 455
Q ss_pred cccccCCCCCCC---EEeeeCCCCCCccc-cccCCCCCCC-EEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCC
Q 006018 549 VSSRLCNLKSLR---RLNLSGCLKLEKLP-EEIGNLESLE-YLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPEL 623 (664)
Q Consensus 549 lp~~~~~l~~L~---~L~L~~~~~~~~~p-~~l~~l~~L~-~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l 623 (664)
+|. +..+++|+ +|++++|..+..+| ..+.++++|+ +|++++|.++.+|......++|+.|++++|+.+..+|..
T Consensus 120 lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 120 FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTT
T ss_pred ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHH
Confidence 775 88888888 99999982244555 4588899999 999999999998876655588999999998645566542
Q ss_pred CCCCEEeeeCC-CCCccccCCCcccccCCCC----CceEEccCCC
Q 006018 624 PCGSSIHARHC-TSLKTLSNSSTLLTRSSKH----WDIFNFSNCS 663 (664)
Q Consensus 624 ~~~~~l~~~~~-~~L~~L~ls~N~l~~~~~~----~~~~~~~~c~ 663 (664)
.+.++ ++|+.|++++|.+++..+. ...+.+.+|.
T Consensus 199 ------~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 199 ------AFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTW 237 (239)
T ss_dssp ------TTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC-
T ss_pred ------HhhccccCCcEEECCCCccccCChhHhccCceeeccCcc
Confidence 46778 9999999999999864433 3455555543
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.55 E-value=3e-14 Score=160.64 Aligned_cols=167 Identities=18% Similarity=0.207 Sum_probs=124.6
Q ss_pred ccCccCCCccC---cCcccEEEcCCCCCCcccccccc----------cccccccccccccccccccC-CCCCCcEEeecC
Q 006018 477 NENTSLPTGIN---LDSLKELYLGGCSNLKRFPEISC----------NIEDLDLKETAIEELPSSIG-NLSRLVDLDLTN 542 (664)
Q Consensus 477 ~~~~~lp~~~~---l~~L~~L~l~~~~~~~~~p~~~~----------~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~ 542 (664)
+....+|..+. +++|+.|++++|...+.+|..+. +|+.|++++|.++.+|..+. .+++|++|+|++
T Consensus 387 N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 34446666553 44788888888887776665443 78888888888888887644 588888888888
Q ss_pred CCCCCccccccCC--------CCCCCEEeeeCCCCCCccccccC--CCCCCCEEEccCCCCccccccccCCCCCCEEeec
Q 006018 543 CSGLKSVSSRLCN--------LKSLRRLNLSGCLKLEKLPEEIG--NLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQ 612 (664)
Q Consensus 543 ~~~l~~lp~~~~~--------l~~L~~L~L~~~~~~~~~p~~l~--~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~ 612 (664)
|... .+|..+.. +++|+.|+|++|.+. .+|..+. .+++|++|+|++|.++.+|..+.++++|+.|+|+
T Consensus 467 N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 467 NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECC
T ss_pred CCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECC
Confidence 6544 66654333 228888888888754 7888876 8888888888888888888888888888888884
Q ss_pred ------CCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCCC
Q 006018 613 ------NCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSKH 653 (664)
Q Consensus 613 ------~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~~ 653 (664)
+|++.+.+|. .+..+++|+.|++++|.+ +.+|.
T Consensus 545 ~N~~ls~N~l~~~~p~-------~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 545 NQRDAQGNRTLREWPE-------GITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp SCBCTTCCBCCCCCCT-------TGGGCSSCCEEECCSSCC-CBCCS
T ss_pred CCcccccCcccccChH-------HHhcCCCCCEEECCCCcC-CccCH
Confidence 4566777776 577788888888888888 34444
No 50
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.55 E-value=2.2e-14 Score=144.27 Aligned_cols=160 Identities=21% Similarity=0.197 Sum_probs=81.0
Q ss_pred cCcccEEEcCCCCCCcccccccc---ccccccccccccccccc-ccCCCCCCcEEeecCCCCCC-ccccccCCCCCCCEE
Q 006018 488 LDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLK-SVSSRLCNLKSLRRL 562 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~-~lp~~~~~l~~L~~L 562 (664)
+++|+.|++++|......+..+. +|+.|++++|.+..++. .+..+++|++|++++|.... .+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 44444444444443322222221 44444444444444433 34444455555554433222 134444445555555
Q ss_pred eeeCCCCCCccccccCCCCCCC----EEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCc
Q 006018 563 NLSGCLKLEKLPEEIGNLESLE----YLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLK 638 (664)
Q Consensus 563 ~L~~~~~~~~~p~~l~~l~~L~----~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~ 638 (664)
++++|.+.+..+..+..+.+|+ .|++++|.+..+|.......+|+.|++++|.+. .+|.. .+..+++|+
T Consensus 155 ~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~------~~~~l~~L~ 227 (276)
T 2z62_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDG------IFDRLTSLQ 227 (276)
T ss_dssp ECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTT------TTTTCCSCC
T ss_pred ECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHh------Hhccccccc
Confidence 5555443333333333333333 455555555544444444446677777776543 33331 356789999
Q ss_pred cccCCCcccccCCCCC
Q 006018 639 TLSNSSTLLTRSSKHW 654 (664)
Q Consensus 639 ~L~ls~N~l~~~~~~~ 654 (664)
.|++++|++++..|..
T Consensus 228 ~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 228 KIWLHTNPWDCSCPRI 243 (276)
T ss_dssp EEECCSSCBCCCTTTT
T ss_pred EEEccCCcccccCCch
Confidence 9999999999877643
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=5.9e-14 Score=143.40 Aligned_cols=122 Identities=24% Similarity=0.398 Sum_probs=59.2
Q ss_pred CcCcccEEEcCCCCCCccccccc--ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEee
Q 006018 487 NLDSLKELYLGGCSNLKRFPEIS--CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNL 564 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 564 (664)
.+++|+.|++++|... .++... .+|+.|++++|.++.++ .+..+++|+.|++++|. +..++ .+..+++|+.|++
T Consensus 61 ~l~~L~~L~L~~n~i~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l 136 (308)
T 1h6u_A 61 YLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ-ITDVT-PLAGLSNLQVLYL 136 (308)
T ss_dssp GCTTCCEEECCSSCCC-CCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEEC
T ss_pred ccCCCCEEEccCCcCC-CChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCC-CCCch-hhcCCCCCCEEEC
Confidence 3555555555555432 222211 14555555555555543 34555555555555543 23333 2455555555555
Q ss_pred eCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCC
Q 006018 565 SGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCK 615 (664)
Q Consensus 565 ~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~ 615 (664)
++|.+. .+|. +..+++|++|++++|.++.+|. +..+++|+.|++++|.
T Consensus 137 ~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 137 DLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp CSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CCCccC-cCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 555432 2222 4455555555555555555443 5555555555555543
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=6e-14 Score=161.52 Aligned_cols=173 Identities=17% Similarity=0.202 Sum_probs=128.0
Q ss_pred ccCCCccC---cCcccEEEcCCCCCCccccccc--------ccccccccccccccccccccC-CCCCCcEEeecCCCCCC
Q 006018 480 TSLPTGIN---LDSLKELYLGGCSNLKRFPEIS--------CNIEDLDLKETAIEELPSSIG-NLSRLVDLDLTNCSGLK 547 (664)
Q Consensus 480 ~~lp~~~~---l~~L~~L~l~~~~~~~~~p~~~--------~~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~~l~ 547 (664)
..+|..+. .++|+.|++++|.+.+.+|... .+|+.|++++|.+..+|..+. .+++|+.|+|++|. +.
T Consensus 632 ~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~ 710 (876)
T 4ecn_A 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MT 710 (876)
T ss_dssp CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CS
T ss_pred CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CC
Confidence 35555443 2347777777776655544332 167788888888888887654 78899999999865 44
Q ss_pred ccccccCCC--------CCCCEEeeeCCCCCCccccccC--CCCCCCEEEccCCCCccccccccCCCCCCEEeecC----
Q 006018 548 SVSSRLCNL--------KSLRRLNLSGCLKLEKLPEEIG--NLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQN---- 613 (664)
Q Consensus 548 ~lp~~~~~l--------~~L~~L~L~~~~~~~~~p~~l~--~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~---- 613 (664)
.+|..+... ++|+.|+|++|.+. .+|..+. .+++|+.|+|++|.+..+|..+.++++|+.|+|++
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCT
T ss_pred ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCc
Confidence 777554432 38999999998744 7888887 89999999999999999998999999999999976
Q ss_pred --CCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCCCC-----ceEEccCC
Q 006018 614 --CKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSKHW-----DIFNFSNC 662 (664)
Q Consensus 614 --~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~~~-----~~~~~~~c 662 (664)
|++.+.+|. .+.+|++|+.|++++|.| +.+|.. ..+++.+|
T Consensus 790 s~N~l~~~ip~-------~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N 837 (876)
T 4ecn_A 790 EGNRILRQWPT-------GITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADN 837 (876)
T ss_dssp TCCBCCCCCCT-------TGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSC
T ss_pred ccccccccChH-------HHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCC
Confidence 666777777 577889999999999988 555553 34555554
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=154.74 Aligned_cols=158 Identities=22% Similarity=0.209 Sum_probs=97.6
Q ss_pred cCcccEEEcCCCCCCcccccccc---cccccccccccccccccc-cCCCCCCcEEeecCCCCCCccccccCCCCCCCEEe
Q 006018 488 LDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSS-IGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLN 563 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 563 (664)
+++|+.|++++|......|..+. +|+.|+|++|.++.+|.. +.++++|++|+|++|......|..+..+++|+.|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 66666666666654444343333 566666666666666543 45666666666666555544555666666666666
Q ss_pred eeCCCCCCccccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccC
Q 006018 564 LSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSN 642 (664)
Q Consensus 564 L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~l 642 (664)
+++|.+....|..+.++++|++|++++|.++.+|. .+.++++|+.|++++|.+....+. .+..+++|+.|++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-------~~~~l~~L~~L~l 207 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY-------SFKRLYRLKVLEI 207 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTT-------CSCSCTTCCEEEE
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChh-------hcccCcccceeeC
Confidence 66666555555566666666666666666666654 356666667777766655443333 4666778888888
Q ss_pred CCcccccCCC
Q 006018 643 SSTLLTRSSK 652 (664)
Q Consensus 643 s~N~l~~~~~ 652 (664)
++|.+.+..|
T Consensus 208 ~~~~~~~~~~ 217 (477)
T 2id5_A 208 SHWPYLDTMT 217 (477)
T ss_dssp ECCTTCCEEC
T ss_pred CCCccccccC
Confidence 8776655444
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=4.9e-14 Score=157.80 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=56.6
Q ss_pred CcCcccEEEcCCCCCCcccccccc---cccccccccccccccccc-cCCCCCCcEEeecCCCCCCccccccCCCCCCCEE
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSS-IGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRL 562 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 562 (664)
.+++|+.|++++|......|..+. +|+.|+|++|.+..+|+. ++.+++|++|+|++|......|..+..+++|++|
T Consensus 97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 367777777777765544444332 677777777777777765 3677777777777766555555567777777777
Q ss_pred eeeCCCCC
Q 006018 563 NLSGCLKL 570 (664)
Q Consensus 563 ~L~~~~~~ 570 (664)
+|++|.+.
T Consensus 177 ~L~~N~l~ 184 (597)
T 3oja_B 177 QLSSNRLT 184 (597)
T ss_dssp ECTTSCCS
T ss_pred ECcCCCCC
Confidence 77777643
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.53 E-value=3.9e-14 Score=146.40 Aligned_cols=152 Identities=19% Similarity=0.272 Sum_probs=107.4
Q ss_pred CcCcccEEEcCCCCCCccccccc-cccccccccccccccccc-ccCCCCCCcEEeecCCCCCC--ccccccCCCCCCCEE
Q 006018 487 NLDSLKELYLGGCSNLKRFPEIS-CNIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLK--SVSSRLCNLKSLRRL 562 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~-~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L 562 (664)
.+++|+.|++++|... .+|... .+|+.|++++|.+..++. .+..+++|+.|++++|.... ..+..+..+++|++|
T Consensus 98 ~l~~L~~L~Ls~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 98 PLVKLERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TCTTCCEEECCSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCCCEEECCCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 3667777777776533 444333 367777777777776654 46677778888887765432 445567777888888
Q ss_pred eeeCCCCCCccccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCcccc
Q 006018 563 NLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLS 641 (664)
Q Consensus 563 ~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ 641 (664)
++++|. +..+|..+. ++|++|++++|.++.+ |..+..+++|+.|++++|.+....+. .+..+++|+.|+
T Consensus 177 ~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-------~~~~l~~L~~L~ 246 (330)
T 1xku_A 177 RIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG-------SLANTPHLRELH 246 (330)
T ss_dssp ECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT-------TGGGSTTCCEEE
T ss_pred ECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh-------hccCCCCCCEEE
Confidence 888777 445665544 6788888888888866 56778888888888888776655554 467789999999
Q ss_pred CCCccccc
Q 006018 642 NSSTLLTR 649 (664)
Q Consensus 642 ls~N~l~~ 649 (664)
+++|.++.
T Consensus 247 L~~N~l~~ 254 (330)
T 1xku_A 247 LNNNKLVK 254 (330)
T ss_dssp CCSSCCSS
T ss_pred CCCCcCcc
Confidence 99999883
No 56
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.52 E-value=8.3e-14 Score=147.46 Aligned_cols=84 Identities=20% Similarity=0.220 Sum_probs=58.2
Q ss_pred CcCcccEEEcCCCCCCcccccccc---cccccccccccccccccc-cCCCCCCcEEeecCCCCCCccccccCCCCCCCEE
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSS-IGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRL 562 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 562 (664)
.+++|+.|++++|......|..+. +|+.|++++|.++.+|.. +..+++|++|++++|......|..+..+++|++|
T Consensus 91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEE
T ss_pred CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEE
Confidence 477777788877765544444333 677778888877777765 4677788888887766555555567777888888
Q ss_pred eeeCCCCC
Q 006018 563 NLSGCLKL 570 (664)
Q Consensus 563 ~L~~~~~~ 570 (664)
++++|.+.
T Consensus 171 ~l~~n~l~ 178 (390)
T 3o6n_A 171 QLSSNRLT 178 (390)
T ss_dssp ECCSSCCS
T ss_pred ECCCCcCC
Confidence 88777643
No 57
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.52 E-value=4.5e-14 Score=153.79 Aligned_cols=168 Identities=24% Similarity=0.257 Sum_probs=133.1
Q ss_pred CcCcccEEEcCCCCCCccccc-cc---cccccccccccccccc-ccccCCCCCCcEEeecCCCCCCccccccCCCCCCCE
Q 006018 487 NLDSLKELYLGGCSNLKRFPE-IS---CNIEDLDLKETAIEEL-PSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRR 561 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~-~~---~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~ 561 (664)
++++|+.|++++|... .+|. .+ .+|+.|++++|.+..+ |..+..+++|+.|++++|......|..+.++++|+.
T Consensus 78 ~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 78 NLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp TCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred CCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence 4889999999998754 4443 33 3899999999999866 457889999999999987766666778899999999
Q ss_pred EeeeCCCCCCccccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccc
Q 006018 562 LNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTL 640 (664)
Q Consensus 562 L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L 640 (664)
|+|++|.+....+..+..+++|+.|++++|.+..++. .+..+++|+.|++++|+....+|. ......+|+.|
T Consensus 157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-------~~~~~~~L~~L 229 (477)
T 2id5_A 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP-------NCLYGLNLTSL 229 (477)
T ss_dssp EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT-------TTTTTCCCSEE
T ss_pred EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc-------ccccCccccEE
Confidence 9999998665555678999999999999999987764 688899999999999998888887 33345589999
Q ss_pred cCCCcccccCC-------CCCceEEccCC
Q 006018 641 SNSSTLLTRSS-------KHWDIFNFSNC 662 (664)
Q Consensus 641 ~ls~N~l~~~~-------~~~~~~~~~~c 662 (664)
++++|.++... +....+++.++
T Consensus 230 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred ECcCCcccccCHHHhcCccccCeeECCCC
Confidence 99999887543 44556666554
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=150.22 Aligned_cols=176 Identities=22% Similarity=0.241 Sum_probs=134.4
Q ss_pred ccCccCCCccCcCcccEEEcCCCCCCcccccccc---cccccccccccccccc-cccCCCCCCcEEeecCCCCCCccccc
Q 006018 477 NENTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELP-SSIGNLSRLVDLDLTNCSGLKSVSSR 552 (664)
Q Consensus 477 ~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~ 552 (664)
+..+.+|..+. ++|+.|++++|......+..+. +|+.|++++|.++.++ ..+.++++|++|++++|... .+|..
T Consensus 41 ~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~ 118 (353)
T 2z80_A 41 GSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSS 118 (353)
T ss_dssp TTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHH
T ss_pred CCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHh
Confidence 34556776543 6899999999875543332333 7899999999998875 46889999999999986544 55544
Q ss_pred -cCCCCCCCEEeeeCCCCCCcccc--ccCCCCCCCEEEccCC-CCcccc-ccccCCCCCCEEeecCCCCCCcCCCCCCCC
Q 006018 553 -LCNLKSLRRLNLSGCLKLEKLPE--EIGNLESLEYLNLAEK-DFEKIP-SSMKQLSKLSDLRLQNCKRLQSLPELPCGS 627 (664)
Q Consensus 553 -~~~l~~L~~L~L~~~~~~~~~p~--~l~~l~~L~~L~l~~n-~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~ 627 (664)
+.++++|++|++++|.+ ..+|. .+..+++|++|++++| .+..++ ..+.++++|++|++++|.+....|.
T Consensus 119 ~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----- 192 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK----- 192 (353)
T ss_dssp HHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT-----
T ss_pred HhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH-----
Confidence 88899999999999884 45665 7889999999999988 577764 5788999999999999887776676
Q ss_pred EEeeeCCCCCccccCCCcccccC-------CCCCceEEccCC
Q 006018 628 SIHARHCTSLKTLSNSSTLLTRS-------SKHWDIFNFSNC 662 (664)
Q Consensus 628 ~l~~~~~~~L~~L~ls~N~l~~~-------~~~~~~~~~~~c 662 (664)
.+..+++|+.|++++|.++.. .+....+++.+|
T Consensus 193 --~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 193 --SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp --TTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred --HHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 577889999999999987532 344555555544
No 59
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=6.6e-14 Score=141.79 Aligned_cols=156 Identities=22% Similarity=0.284 Sum_probs=124.8
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCccccccc--ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCC
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEIS--CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCN 555 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 555 (664)
....+|....+++|+.|++++|.... ++... .+|+.|++++|.++.+|. +..+++|++|++++|. +..++ .+..
T Consensus 57 ~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~-i~~~~-~l~~ 132 (291)
T 1h6t_A 57 DIKSVQGIQYLPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNG-ISDIN-GLVH 132 (291)
T ss_dssp CCCCCTTGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSC-CCCCG-GGGG
T ss_pred CcccChhHhcCCCCCEEEccCCccCC-CcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCc-CCCCh-hhcC
Confidence 34455555568999999999997544 44322 288999999999988765 8899999999999865 44555 6888
Q ss_pred CCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCC
Q 006018 556 LKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCT 635 (664)
Q Consensus 556 l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~ 635 (664)
+++|+.|++++|.+.+ + ..+..+++|++|++++|.++.+++ +..+++|+.|++++|.+. .+|. +..++
T Consensus 133 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~-~l~~--------l~~l~ 200 (291)
T 1h6t_A 133 LPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-DLRA--------LAGLK 200 (291)
T ss_dssp CTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-BCGG--------GTTCT
T ss_pred CCCCCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCC-CChh--------hccCC
Confidence 9999999999998544 4 578899999999999999998876 899999999999998654 3443 56789
Q ss_pred CCccccCCCccccc
Q 006018 636 SLKTLSNSSTLLTR 649 (664)
Q Consensus 636 ~L~~L~ls~N~l~~ 649 (664)
+|+.|++++|.++.
T Consensus 201 ~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 201 NLDVLELFSQECLN 214 (291)
T ss_dssp TCSEEEEEEEEEEC
T ss_pred CCCEEECcCCcccC
Confidence 99999999998875
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.52 E-value=4.5e-14 Score=158.63 Aligned_cols=169 Identities=20% Similarity=0.115 Sum_probs=130.8
Q ss_pred cccCccCCCccCcCcccEEEcCCCCCCcccccccc---cccccccccccccccc-cccCCCCCCcEEeecCCCCCCcccc
Q 006018 476 LNENTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELP-SSIGNLSRLVDLDLTNCSGLKSVSS 551 (664)
Q Consensus 476 ~~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~ 551 (664)
-...+.+|..+. ++++.|++++|......+..+. +|+.|++++|.++.++ ..+.++++|++|++++|......|.
T Consensus 20 ~~~l~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~ 98 (606)
T 3vq2_A 20 DQKLSKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98 (606)
T ss_dssp TSCCSSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred CCCcccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh
Confidence 345567777554 7899999999986555443443 7899999999999874 4688999999999998876666688
Q ss_pred ccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCc--cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEE
Q 006018 552 RLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFE--KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSI 629 (664)
Q Consensus 552 ~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l 629 (664)
.+.++++|++|++++|.+.+..|..++++++|++|++++|.+. .+|..++++++|++|++++|.+....|.
T Consensus 99 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~------- 171 (606)
T 3vq2_A 99 SFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN------- 171 (606)
T ss_dssp SSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT-------
T ss_pred hcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh-------
Confidence 8999999999999999866666678999999999999999998 4788999999999999999877665554
Q ss_pred eeeCCCCC----ccccCCCcccccCCC
Q 006018 630 HARHCTSL----KTLSNSSTLLTRSSK 652 (664)
Q Consensus 630 ~~~~~~~L----~~L~ls~N~l~~~~~ 652 (664)
.+..+++| ..|++++|.+++..+
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred hhhhhhccccccceeeccCCCcceeCc
Confidence 33344433 357777777664443
No 61
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.52 E-value=5.3e-14 Score=133.75 Aligned_cols=130 Identities=17% Similarity=0.253 Sum_probs=116.0
Q ss_pred ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEcc
Q 006018 510 CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLA 589 (664)
Q Consensus 510 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 589 (664)
.+|+.|++++|.+..+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 38999999999999998 7899999999999997 555555 78899999999999999877788999999999999999
Q ss_pred CCCCcc-ccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccC
Q 006018 590 EKDFEK-IPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRS 650 (664)
Q Consensus 590 ~n~i~~-lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~ 650 (664)
+|.++. .|..+..+++|++|++++|+..+.+|. +..+++|+.|++++|.+++.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--------l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--------LKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--------GGGCSSCCEEECTTBCCCCC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--------hcCCCCCCEEECCCCCCcCh
Confidence 999985 677899999999999999986676654 67899999999999999864
No 62
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.51 E-value=6.6e-14 Score=151.45 Aligned_cols=149 Identities=19% Similarity=0.164 Sum_probs=118.1
Q ss_pred ceeccccCccCCCccCcCcccEEEcCCCCCCcccccccc---ccccccccccccc-ccc-cccCCCCCCcEEeecCCCCC
Q 006018 472 IYQVLNENTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIE-ELP-SSIGNLSRLVDLDLTNCSGL 546 (664)
Q Consensus 472 ~~~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~-~lp-~~~~~l~~L~~L~l~~~~~l 546 (664)
+...-.....+|. -.++|+.|++++|......|..+. +|++|++++|.+. .++ ..+..+++|++|++++|...
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 3333445566776 237899999999987665565544 7899999999886 554 56889999999999998776
Q ss_pred CccccccCCCCCCCEEeeeCCCCCCccccc--cCCCCCCCEEEccCCCCccc-ccc-ccCCCCCCEEeecCCCCCCcCCC
Q 006018 547 KSVSSRLCNLKSLRRLNLSGCLKLEKLPEE--IGNLESLEYLNLAEKDFEKI-PSS-MKQLSKLSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 547 ~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~--l~~l~~L~~L~l~~n~i~~l-p~~-i~~L~~L~~L~L~~~~~l~~lp~ 622 (664)
...|..+.++++|++|+|++|.+.+..|.. +..+++|++|++++|.+..+ |.. +.++++|++|++++|.+....|.
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChh
Confidence 666888999999999999999877666655 88999999999999999877 544 78999999999999887665554
No 63
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.51 E-value=8.8e-14 Score=156.25 Aligned_cols=155 Identities=23% Similarity=0.216 Sum_probs=135.1
Q ss_pred ccEEEcCCCCCCccccccc-cccccccccccccccccc-ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCC
Q 006018 491 LKELYLGGCSNLKRFPEIS-CNIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCL 568 (664)
Q Consensus 491 L~~L~l~~~~~~~~~p~~~-~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~ 568 (664)
...++.+++. +..+|... .+++.|++++|.++.+++ .+.++++|++|++++|......|..|.++++|++|+|++|.
T Consensus 13 ~~~~~c~~~~-l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 13 NITYQCMDQK-LSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TTEEECTTSC-CSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCceEccCCC-cccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 4578888765 55666644 489999999999998876 78999999999999987666567789999999999999999
Q ss_pred CCCccccccCCCCCCCEEEccCCCCcccc-ccccCCCCCCEEeecCCCCCC-cCCCCCCCCEEeeeCCCCCccccCCCcc
Q 006018 569 KLEKLPEEIGNLESLEYLNLAEKDFEKIP-SSMKQLSKLSDLRLQNCKRLQ-SLPELPCGSSIHARHCTSLKTLSNSSTL 646 (664)
Q Consensus 569 ~~~~~p~~l~~l~~L~~L~l~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~l~~~~~l~~~~~~~L~~L~ls~N~ 646 (664)
+.+..|..++++++|++|++++|.+..+| ..++++++|++|++++|.+.. .+|. .+.++++|+.|++++|.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-------~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-------YFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-------GGGTCTTCCEEECCSSC
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-------hHhhcCCCCEEEccCCc
Confidence 77777999999999999999999999887 679999999999999998765 5677 68899999999999999
Q ss_pred cccCCCC
Q 006018 647 LTRSSKH 653 (664)
Q Consensus 647 l~~~~~~ 653 (664)
+++..|.
T Consensus 165 l~~~~~~ 171 (606)
T 3vq2_A 165 IQTITVN 171 (606)
T ss_dssp CCEECTT
T ss_pred ceecChh
Confidence 9987665
No 64
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.51 E-value=6.5e-14 Score=132.52 Aligned_cols=127 Identities=20% Similarity=0.231 Sum_probs=92.5
Q ss_pred cEEEcCCCCCCcccccccc-cccccccccccccccccc--cCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCC
Q 006018 492 KELYLGGCSNLKRFPEISC-NIEDLDLKETAIEELPSS--IGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCL 568 (664)
Q Consensus 492 ~~L~l~~~~~~~~~p~~~~-~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~ 568 (664)
+.+++++|.. +.+|.... +++.|++++|.+..++.. +..+++|++|+|++|......|..+.++++|++|+|++|.
T Consensus 11 ~~l~~s~~~l-~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCC-SSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCc-CcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 6778887753 55665443 778888888888777653 6778888888888766555556777788888888888887
Q ss_pred CCCccccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCc
Q 006018 569 KLEKLPEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQS 619 (664)
Q Consensus 569 ~~~~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~ 619 (664)
+.+..|..+.++++|++|+|++|.++.+ |..+..+++|++|+|++|++...
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 6665566677788888888888888755 55677778888888888766543
No 65
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=5.2e-14 Score=147.26 Aligned_cols=165 Identities=18% Similarity=0.150 Sum_probs=122.9
Q ss_pred ccCccCCCccCcCcccEEEcCCCCCCcccccc----ccccccccccccccccccc-ccCCCCCCcEEeecCCCCCCcccc
Q 006018 477 NENTSLPTGINLDSLKELYLGGCSNLKRFPEI----SCNIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSS 551 (664)
Q Consensus 477 ~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~----~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~ 551 (664)
+....+|..+ ...++.|+|++|.+....+.. ..+|+.|+|++|.|..+++ .+..+++|++|+|++|......+.
T Consensus 28 ~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 106 (361)
T 2xot_A 28 QQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEF 106 (361)
T ss_dssp SCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHH
Confidence 4455677654 356888999998765544443 2378899999999988875 588899999999998764444445
Q ss_pred ccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccc----cCCCCCCEEeecCCCCCCcCCCCCCCC
Q 006018 552 RLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSM----KQLSKLSDLRLQNCKRLQSLPELPCGS 627 (664)
Q Consensus 552 ~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i----~~L~~L~~L~L~~~~~l~~lp~l~~~~ 627 (664)
.+..+++|+.|+|++|.+....|..+.++++|++|+|++|.++.+|..+ ..+++|+.|+|++|++. .+|..
T Consensus 107 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~---- 181 (361)
T 2xot_A 107 LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLT---- 181 (361)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHH----
T ss_pred HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHH----
Confidence 6888999999999999877666788899999999999999999888765 56889999999997654 44421
Q ss_pred EEeeeCCCC--CccccCCCccccc
Q 006018 628 SIHARHCTS--LKTLSNSSTLLTR 649 (664)
Q Consensus 628 ~l~~~~~~~--L~~L~ls~N~l~~ 649 (664)
.+..++. |+.|++++|+++.
T Consensus 182 --~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 182 --DLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp --HHHHSCHHHHTTEECCSSCEEC
T ss_pred --HhhhccHhhcceEEecCCCccC
Confidence 3455555 4778888888763
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.50 E-value=8.5e-14 Score=143.95 Aligned_cols=152 Identities=20% Similarity=0.225 Sum_probs=74.5
Q ss_pred cCcccEEEcCCCCCCcccccccc---cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEee
Q 006018 488 LDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNL 564 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 564 (664)
+++|+.|++++|......|..+. +|+.|++++|.++.+|..+. ++|++|++++|......+..+..+++|+.|++
T Consensus 77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 44455555555443333233222 44445555555544444333 44555555443322222223444555555555
Q ss_pred eCCCCC--CccccccCCC--------------------CCCCEEEccCCCCcccc-ccccCCCCCCEEeecCCCCCCcCC
Q 006018 565 SGCLKL--EKLPEEIGNL--------------------ESLEYLNLAEKDFEKIP-SSMKQLSKLSDLRLQNCKRLQSLP 621 (664)
Q Consensus 565 ~~~~~~--~~~p~~l~~l--------------------~~L~~L~l~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp 621 (664)
++|.+. +..|..+..+ ++|++|++++|.++.++ ..+..+++|+.|++++|.+....|
T Consensus 155 ~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT
T ss_pred CCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh
Confidence 544432 1223333333 35555555555555543 345666666666666655544333
Q ss_pred CCCCCCEEeeeCCCCCccccCCCcccc
Q 006018 622 ELPCGSSIHARHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 622 ~l~~~~~l~~~~~~~L~~L~ls~N~l~ 648 (664)
. .+..+++|+.|++++|.++
T Consensus 235 ~-------~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 235 G-------SLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp T-------GGGGCTTCCEEECCSSCCC
T ss_pred h-------HhhCCCCCCEEECCCCcCe
Confidence 3 3556677777777777776
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.50 E-value=5.3e-14 Score=154.99 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=134.4
Q ss_pred CcCcccEEEcCCCCCCcccccccc---cccccccccccccc---cccccCCCCCCcEEeecCCCCCCccccc-cCCCCCC
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEE---LPSSIGNLSRLVDLDLTNCSGLKSVSSR-LCNLKSL 559 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L 559 (664)
.+++|+.|++++|.....+|..+. +|+.|++++|.+.. +|..+..+++|++|++++|.....+|.. +..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 588999999999988776776554 79999999999985 5567899999999999998766657754 7889999
Q ss_pred CEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCcc
Q 006018 560 RRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKT 639 (664)
Q Consensus 560 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~ 639 (664)
+.|++++|.+.+..|..+. ++|++|++++|.++.+|..+..+++|+.|++++|++. .+|.. .+..+++|+.
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~------~~~~l~~L~~ 472 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDG------IFDRLTSLQK 472 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTT------TTTTCTTCCE
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHH------HhccCCcccE
Confidence 9999999998888887765 7999999999999999999999999999999998765 66662 3678999999
Q ss_pred ccCCCcccccCCC
Q 006018 640 LSNSSTLLTRSSK 652 (664)
Q Consensus 640 L~ls~N~l~~~~~ 652 (664)
|++++|++++..+
T Consensus 473 L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 473 IWLHTNPWDCSCP 485 (520)
T ss_dssp EECCSSCBCCCHH
T ss_pred EECcCCCCcccCC
Confidence 9999999987544
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.50 E-value=1.8e-13 Score=141.32 Aligned_cols=158 Identities=18% Similarity=0.126 Sum_probs=85.3
Q ss_pred cCcccEEEcCCCCCCc--cccccc---ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEE
Q 006018 488 LDSLKELYLGGCSNLK--RFPEIS---CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRL 562 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~--~~p~~~---~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L 562 (664)
+++|+.|++++|.... ..+..+ .+|+.|++++|.++.+|..+. ++|+.|++++|......|..+..+++|+.|
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 5555555555554321 222222 255566666666666555443 566666666654444445556666666666
Q ss_pred eeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccC
Q 006018 563 NLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSN 642 (664)
Q Consensus 563 ~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~l 642 (664)
++++|.+.+..|..+..+++|++|++++|.++.+|..+..+++|++|++++|++...-+..... .......++|+.|++
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~-~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP-PGYNTKKASYSGVSL 300 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC-SSCCTTSCCCSEEEC
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCC-cccccccccccceEe
Confidence 6666665444444566666666666666666666666666666666666665543222211000 000112355666677
Q ss_pred CCcccc
Q 006018 643 SSTLLT 648 (664)
Q Consensus 643 s~N~l~ 648 (664)
++|++.
T Consensus 301 ~~N~~~ 306 (330)
T 1xku_A 301 FSNPVQ 306 (330)
T ss_dssp CSSSSC
T ss_pred ecCccc
Confidence 777664
No 69
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.50 E-value=1.5e-13 Score=152.89 Aligned_cols=158 Identities=22% Similarity=0.286 Sum_probs=129.6
Q ss_pred ccCccCCCccCcCcccEEEcCCCCCCccccccc--ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccC
Q 006018 477 NENTSLPTGINLDSLKELYLGGCSNLKRFPEIS--CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLC 554 (664)
Q Consensus 477 ~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~ 554 (664)
+....+|....+++|+.|+|++|.+.. ++... .+|+.|+|++|.+..+| .+..+++|+.|+|++|. +..++ .+.
T Consensus 53 n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~l~ 128 (605)
T 1m9s_A 53 SDIKSVQGIQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG-ISDIN-GLV 128 (605)
T ss_dssp CCCCCCTTGGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSC-CCCCG-GGG
T ss_pred CCCCCChHHccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCC-CCCCc-ccc
Confidence 344556665569999999999997554 44322 28999999999999877 68999999999999875 44555 688
Q ss_pred CCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCC
Q 006018 555 NLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHC 634 (664)
Q Consensus 555 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~ 634 (664)
.+++|+.|+|++|.+.+ + ..+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|.+.. +|. +..|
T Consensus 129 ~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~~--------l~~l 196 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LRA--------LAGL 196 (605)
T ss_dssp GCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CGG--------GTTC
T ss_pred CCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC-ChH--------HccC
Confidence 99999999999998554 4 578899999999999999998876 9999999999999986644 443 6778
Q ss_pred CCCccccCCCcccccC
Q 006018 635 TSLKTLSNSSTLLTRS 650 (664)
Q Consensus 635 ~~L~~L~ls~N~l~~~ 650 (664)
++|+.|++++|.+++.
T Consensus 197 ~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 197 KNLDVLELFSQECLNK 212 (605)
T ss_dssp TTCSEEECCSEEEECC
T ss_pred CCCCEEEccCCcCcCC
Confidence 9999999999998864
No 70
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.50 E-value=7.6e-14 Score=162.67 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=89.0
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCcccccccc---ccccccccccc-cccc-ccccCCCCCCcEEeecCCCCCCccccc
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETA-IEEL-PSSIGNLSRLVDLDLTNCSGLKSVSSR 552 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~ 552 (664)
+.+.+|. -.++|+.|+|++|......|..+. +|+.|+|++|. +..+ |..+.++++|++|+|++|......|..
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 4445555 346677777777765444444333 66677777763 3355 456677777777777766555555666
Q ss_pred cCCCCCCCEEeeeCCCCCCccccc--cCCCCCCCEEEccCCCCcccc--ccccCCCCCCEEeecCCCCCCcCC
Q 006018 553 LCNLKSLRRLNLSGCLKLEKLPEE--IGNLESLEYLNLAEKDFEKIP--SSMKQLSKLSDLRLQNCKRLQSLP 621 (664)
Q Consensus 553 ~~~l~~L~~L~L~~~~~~~~~p~~--l~~l~~L~~L~l~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp 621 (664)
+.++++|++|+|++|.+.+..|.. ++++++|++|+|++|.+..++ ..++++++|++|+|++|.+....|
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 777777777777777655555544 667777777777777776542 356777777777777766544433
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.50 E-value=1.3e-13 Score=142.57 Aligned_cols=168 Identities=16% Similarity=0.155 Sum_probs=128.3
Q ss_pred cCccCCCc--cCcCcccEEEcCCCCCCc--ccccccc--cccccccccccccccccccCCCCCCcEEeecCCCCCCcccc
Q 006018 478 ENTSLPTG--INLDSLKELYLGGCSNLK--RFPEISC--NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSS 551 (664)
Q Consensus 478 ~~~~lp~~--~~l~~L~~L~l~~~~~~~--~~p~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 551 (664)
....+|+. ..+++|+.|++++|.... ..|..+. +|+.|++++|.++.+|..+. ++|+.|++++|......+.
T Consensus 134 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~ 211 (332)
T 2ft3_A 134 RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELE 211 (332)
T ss_dssp CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTT
T ss_pred ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHH
Confidence 34455553 248899999999987632 3343333 78899999999999888664 7999999999776666667
Q ss_pred ccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEee
Q 006018 552 RLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHA 631 (664)
Q Consensus 552 ~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~ 631 (664)
.+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++.+|..+..+++|+.|++++|++...-+...... ...
T Consensus 212 ~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~-~~~ 290 (332)
T 2ft3_A 212 DLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV-GFG 290 (332)
T ss_dssp SSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS-SCC
T ss_pred HhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcccc-ccc
Confidence 8999999999999999877766678999999999999999999999999999999999999987654333210000 001
Q ss_pred eCCCCCccccCCCcccc
Q 006018 632 RHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 632 ~~~~~L~~L~ls~N~l~ 648 (664)
....+|+.|++++|++.
T Consensus 291 ~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPVP 307 (332)
T ss_dssp SSSCCBSEEECCSSSSC
T ss_pred cccccccceEeecCccc
Confidence 12467899999999886
No 72
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=7.8e-14 Score=138.96 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=124.9
Q ss_pred cCCCccCcCcccEEEcCCCCCCccccccc--ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCC
Q 006018 481 SLPTGINLDSLKELYLGGCSNLKRFPEIS--CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKS 558 (664)
Q Consensus 481 ~lp~~~~l~~L~~L~l~~~~~~~~~p~~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~ 558 (664)
.++....+++|+.|++++|. +..+|... .+|+.|++++|.++.+|+ +..+++|++|++++|. +..+|.. .. ++
T Consensus 33 ~~~~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~-~~-~~ 107 (263)
T 1xeu_A 33 DLVSQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGI-PS-AC 107 (263)
T ss_dssp SEECHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTC-CC-SS
T ss_pred cccchhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCcc-cc-Cc
Confidence 33433458899999999986 45566432 289999999999999988 9999999999999864 5556643 33 99
Q ss_pred CCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCc
Q 006018 559 LRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLK 638 (664)
Q Consensus 559 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~ 638 (664)
|+.|++++|.+. .+| .+..+++|+.|++++|.++.+| .+..+++|+.|++++|++... + .+..+++|+
T Consensus 108 L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~--------~l~~l~~L~ 175 (263)
T 1xeu_A 108 LSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-G--------GLTRLKKVN 175 (263)
T ss_dssp CCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-T--------TSTTCCCCC
T ss_pred ccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-H--------HhccCCCCC
Confidence 999999999854 454 6899999999999999999987 689999999999999877554 3 367789999
Q ss_pred cccCCCcccccC
Q 006018 639 TLSNSSTLLTRS 650 (664)
Q Consensus 639 ~L~ls~N~l~~~ 650 (664)
.|++++|.+++.
T Consensus 176 ~L~l~~N~~~~~ 187 (263)
T 1xeu_A 176 WIDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEEECC
T ss_pred EEeCCCCcccCC
Confidence 999999998865
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.49 E-value=7.3e-14 Score=157.61 Aligned_cols=166 Identities=22% Similarity=0.176 Sum_probs=98.3
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCcccccccc---ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCccc-cc
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVS-SR 552 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp-~~ 552 (664)
..+++|+.+. .+++.|+|++|.+....+..+. +|++|+|++|.|+.+|+ .|.++++|++|+|++|+ +..+| ..
T Consensus 42 ~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~ 119 (635)
T 4g8a_A 42 NFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGA 119 (635)
T ss_dssp CCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGG
T ss_pred CcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHH
Confidence 3445565442 4567777777764333233332 66777777777776655 46677777777777654 34443 45
Q ss_pred cCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcc--ccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEe
Q 006018 553 LCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEK--IPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIH 630 (664)
Q Consensus 553 ~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~ 630 (664)
|.++++|++|+|++|.+.+..+..++++++|++|++++|.++. +|..+..+++|++|++++|++.+..|. .
T Consensus 120 f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~ 192 (635)
T 4g8a_A 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-------D 192 (635)
T ss_dssp GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-------G
T ss_pred hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc-------c
Confidence 6677777777777776444334456777777777777777663 455666777777777777655443333 2
Q ss_pred eeCCCC----CccccCCCcccccCCC
Q 006018 631 ARHCTS----LKTLSNSSTLLTRSSK 652 (664)
Q Consensus 631 ~~~~~~----L~~L~ls~N~l~~~~~ 652 (664)
+..+.+ +..++++.|.++...+
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~ 218 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQP 218 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred ccchhhhhhhhhhhhcccCcccccCc
Confidence 222222 2345666666665443
No 74
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.49 E-value=1.2e-13 Score=147.28 Aligned_cols=271 Identities=14% Similarity=0.076 Sum_probs=154.4
Q ss_pred CCCCceeehhhHHHHHhhh-cC--CC--CcceEEEE--ecCCCCChHHHHHHHHHHhhcc-----CCc-ceeeccch---
Q 006018 157 NKDQLVGVESIIKEIESQL-LS--GS--TEFNTVGI--WGIGGIGKTTIASAIYSNISSH-----FEG-SYFMQNIR--- 220 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L-~~--~~--~~~~~v~I--~G~gGiGKTtLA~~~~~~~~~~-----f~~-~~~~~~~~--- 220 (664)
.+..|+||+.++++|.+.+ .. .. ...+.+.| +|++|+|||+||+++++..... +.. .+|+....
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 4468999999999999888 42 11 23456666 9999999999999999886553 222 23332111
Q ss_pred --hhh----hccc------chhHHh-HHHHHHHhc--CceEEEEEecCCCHH--------HHHHHhccCCCC---C--CC
Q 006018 221 --DES----EKVG------GLANIH-LNFERRRLS--RMKVLIVFYDLTDLK--------QIDLLIGRLDGF---V--PG 272 (664)
Q Consensus 221 --~~~----~~~~------~l~~~~-l~~~~~~L~--~~~~LlVlDdv~~~~--------~~~~l~~~~~~~---~--~g 272 (664)
... ...+ .....+ .+.+.+.+. +++++|||||++... .+..+...+... + ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 111 0000 000111 334444443 679999999997643 333333322211 2 34
Q ss_pred cEEEEEeCCHHHHHhh-------cCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhc------CC
Q 006018 273 SRVIITTRDVQLLKNH-------RGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYAN------GV 339 (664)
Q Consensus 273 s~IliTtR~~~~~~~~-------~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~------gl 339 (664)
..||+||+...+.... ... ....+.+++|+.+++.++|..++........-..+....+++.++ |+
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~-~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQ-IGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTT-CSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhh-cCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCc
Confidence 4578888765543211 111 122399999999999999976542111111122466788999999 99
Q ss_pred chhHHHHhhhc------C---CCCHHHHHHHHHHhhcCCCCcccceeeeecCCCChhhhhhhhhcccccC----CCCHHH
Q 006018 340 PLALQVLGSYL------K---GMSEEEWESAVNKLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTACFFK----GNDQYL 406 (664)
Q Consensus 340 PLal~~~a~~l------~---~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la~f~~----~~~~~~ 406 (664)
|..+..++... . ..+.+.+..++..... ...+.-++..|++..+.++..++.+.. ......
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~ 332 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGL 332 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHH
Confidence 97655443321 1 1245555555544210 233555778999999999998887642 122322
Q ss_pred HHH----HH-HHcCCc------cccccceecccceeeee
Q 006018 407 VMN----FL-DACRFS------AKIGISRLVGKSLVTIS 434 (664)
Q Consensus 407 ~~~----~~-~~~~~~------~~~~l~~L~~~~li~~~ 434 (664)
+.. +. ...+.. ....++.|.+.++|...
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 333 LRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 221 22 222321 12447888999999775
No 75
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.49 E-value=5.4e-14 Score=143.94 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=111.4
Q ss_pred CcCcccEEEcCCCCCCcccccc-------cccccccccccccccccc-cccCCCCCCcEEeecCCCCCCc--cc--cccC
Q 006018 487 NLDSLKELYLGGCSNLKRFPEI-------SCNIEDLDLKETAIEELP-SSIGNLSRLVDLDLTNCSGLKS--VS--SRLC 554 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~-------~~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~--lp--~~~~ 554 (664)
.+++|+.|++++|......+.. ..+|+.|++++|.+..++ ..++.+++|++|+|++|..... ++ ..+.
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 4788888888888766544321 337888888888888666 4677888888888888765432 22 2346
Q ss_pred CCCCCCEEeeeCCCCCCcccc----ccCCCCCCCEEEccCCCCccc-cccccCC---CCCCEEeecCCCCCCcCCCCCCC
Q 006018 555 NLKSLRRLNLSGCLKLEKLPE----EIGNLESLEYLNLAEKDFEKI-PSSMKQL---SKLSDLRLQNCKRLQSLPELPCG 626 (664)
Q Consensus 555 ~l~~L~~L~L~~~~~~~~~p~----~l~~l~~L~~L~l~~n~i~~l-p~~i~~L---~~L~~L~L~~~~~l~~lp~l~~~ 626 (664)
.+++|++|+|++|.+ ..+|. .+..+++|++|+|++|.+..+ |..+..+ ++|++|+|++|++. .+|.
T Consensus 195 ~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~---- 268 (310)
T 4glp_A 195 KFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK---- 268 (310)
T ss_dssp SSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS----
T ss_pred cCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh----
Confidence 788888888888874 34443 246778888899998888876 7767666 68888899887765 5665
Q ss_pred CEEeeeCCCCCccccCCCcccccC
Q 006018 627 SSIHARHCTSLKTLSNSSTLLTRS 650 (664)
Q Consensus 627 ~~l~~~~~~~L~~L~ls~N~l~~~ 650 (664)
.+ +++|+.|++++|.|++.
T Consensus 269 ---~~--~~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 269 ---GL--PAKLRVLDLSSNRLNRA 287 (310)
T ss_dssp ---CC--CSCCSCEECCSCCCCSC
T ss_pred ---hh--cCCCCEEECCCCcCCCC
Confidence 22 37899999999998873
No 76
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=2.3e-13 Score=131.77 Aligned_cols=139 Identities=21% Similarity=0.233 Sum_probs=116.2
Q ss_pred cccCccCCCccCcCcccEEEcCCCCCCcccccccc---ccccccccccccccc-ccccCCCCCCcEEeecCCCCCCccc-
Q 006018 476 LNENTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEEL-PSSIGNLSRLVDLDLTNCSGLKSVS- 550 (664)
Q Consensus 476 ~~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp- 550 (664)
-+....+|..+. ++|+.|++++|.+....+..+. +|+.|+|++|.+..+ |..+..+++|++|+|++|... .+|
T Consensus 20 ~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~ 97 (220)
T 2v9t_B 20 GKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPK 97 (220)
T ss_dssp TSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred CCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCH
Confidence 345567777654 7899999999986554443333 899999999999987 668999999999999987554 555
Q ss_pred cccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCC
Q 006018 551 SRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNCKR 616 (664)
Q Consensus 551 ~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~~~ 616 (664)
..+..+++|+.|+|++|.+.+..|..+..+++|++|+|++|.++.+|. .+..+++|+.|+|++|+.
T Consensus 98 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred hHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 457889999999999999877778899999999999999999999876 488899999999999875
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=149.31 Aligned_cols=132 Identities=17% Similarity=0.143 Sum_probs=97.4
Q ss_pred CcCcccEEEcCCCCCCccccccc---cccccccccccccccccc--ccCCCCCCcEEeecCCCCCCcc-ccccCCCCCCC
Q 006018 487 NLDSLKELYLGGCSNLKRFPEIS---CNIEDLDLKETAIEELPS--SIGNLSRLVDLDLTNCSGLKSV-SSRLCNLKSLR 560 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~---~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~ 560 (664)
.+++|+.|++++|......+..+ .+|+.|++++|.++.+|. .+..+++|++|++++|+.+..+ |..+.++++|+
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 47888888888886543322222 378888888888888876 6778888888888887655555 45677888888
Q ss_pred EEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccc-cCCCCCCEEeecCCCCCC
Q 006018 561 RLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSM-KQLSKLSDLRLQNCKRLQ 618 (664)
Q Consensus 561 ~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i-~~L~~L~~L~L~~~~~l~ 618 (664)
.|++++|.+.+..|..+..+++|++|++++|.+..+|..+ ..+++|+.|++++|++..
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 236 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT 236 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence 8888888876666788888888888888888887776544 347777777777776544
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.49 E-value=1.9e-13 Score=139.55 Aligned_cols=157 Identities=25% Similarity=0.346 Sum_probs=129.5
Q ss_pred ccCccCCCccCcCcccEEEcCCCCCCcccccccc--cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccC
Q 006018 477 NENTSLPTGINLDSLKELYLGGCSNLKRFPEISC--NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLC 554 (664)
Q Consensus 477 ~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~ 554 (664)
+....+++...+++|+.|++++|.. ..++.... +|+.|++++|.++.++. +..+++|+.|++++|. +..++. +.
T Consensus 73 n~i~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~ 148 (308)
T 1h6u_A 73 NQITDLAPLKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LA 148 (308)
T ss_dssp SCCCCCGGGTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GG
T ss_pred CcCCCChhHccCCCCCEEEccCCcC-CCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-cc
Confidence 3444566645689999999999974 44554332 89999999999999876 8999999999999875 455553 88
Q ss_pred CCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCC
Q 006018 555 NLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHC 634 (664)
Q Consensus 555 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~ 634 (664)
.+++|+.|++++|.+. .++. +..+++|+.|++++|.++.+|. +..+++|++|++++|++.. ++. +..+
T Consensus 149 ~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~-~~~--------l~~l 216 (308)
T 1h6u_A 149 GLTNLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISD-VSP--------LANT 216 (308)
T ss_dssp GCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCB-CGG--------GTTC
T ss_pred CCCCccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCc-ccc--------ccCC
Confidence 9999999999999854 4555 8999999999999999999886 8999999999999987643 332 5678
Q ss_pred CCCccccCCCccccc
Q 006018 635 TSLKTLSNSSTLLTR 649 (664)
Q Consensus 635 ~~L~~L~ls~N~l~~ 649 (664)
++|+.|++++|++++
T Consensus 217 ~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 217 SNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEEEEEEEEEC
T ss_pred CCCCEEEccCCeeec
Confidence 999999999999986
No 79
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=6.7e-14 Score=155.94 Aligned_cols=160 Identities=21% Similarity=0.252 Sum_probs=109.0
Q ss_pred cCcccEEEcCCCCCCcccccc--ccccccccccccccccccc--ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEe
Q 006018 488 LDSLKELYLGGCSNLKRFPEI--SCNIEDLDLKETAIEELPS--SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLN 563 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~--~~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 563 (664)
+++|+.|++++|......+.. ..+|+.|++++|.+..+++ .+..+++|++|++++|......|..+.++++|+.|+
T Consensus 372 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 451 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451 (570)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred cCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEE
Confidence 556666666666533222221 1266677777777665533 466777777777777766666666777777888888
Q ss_pred eeCCCCC-CccccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCcccc
Q 006018 564 LSGCLKL-EKLPEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLS 641 (664)
Q Consensus 564 L~~~~~~-~~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ 641 (664)
+++|.+. +.+|..+..+++|++|++++|.++.+ |..+.++++|+.|++++|++....|. .+..+++|+.|+
T Consensus 452 l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L~~L~ 524 (570)
T 2z63_A 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG-------IFDRLTSLQKIW 524 (570)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-------TTTTCTTCCEEE
T ss_pred CcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH-------HhhcccCCcEEE
Confidence 8777754 45777777778888888888877766 56777778888888887766554444 456778888888
Q ss_pred CCCcccccCCCCC
Q 006018 642 NSSTLLTRSSKHW 654 (664)
Q Consensus 642 ls~N~l~~~~~~~ 654 (664)
+++|++++..|..
T Consensus 525 l~~N~~~~~~~~~ 537 (570)
T 2z63_A 525 LHTNPWDCSCPRI 537 (570)
T ss_dssp CCSSCBCCCTTTT
T ss_pred ecCCcccCCCcch
Confidence 8888888777653
No 80
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=5.8e-14 Score=156.45 Aligned_cols=161 Identities=24% Similarity=0.267 Sum_probs=139.0
Q ss_pred cCcCcccEEEcCCCCCCccc--ccc---cccccccccccccccccccccCCCCCCcEEeecCCCCCCccc-cccCCCCCC
Q 006018 486 INLDSLKELYLGGCSNLKRF--PEI---SCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVS-SRLCNLKSL 559 (664)
Q Consensus 486 ~~l~~L~~L~l~~~~~~~~~--p~~---~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L 559 (664)
..+++|+.|++++|...... |.. ..+|+.|++++|.+..+|..+..+++|+.|++++|......| ..+..+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 56899999999999755432 322 238999999999999998889999999999999977655544 468899999
Q ss_pred CEEeeeCCCCCCccccccCCCCCCCEEEccCCCCc--cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCC
Q 006018 560 RRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFE--KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSL 637 (664)
Q Consensus 560 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L 637 (664)
++|++++|.+.+..|..+.++++|++|++++|.+. .+|..+..+++|+.|++++|++.+..|. .+..+++|
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-------~~~~l~~L 496 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-------AFNSLSSL 496 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-------TTTTCTTC
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-------hhhcccCC
Confidence 99999999988888889999999999999999997 5899999999999999999988877777 57789999
Q ss_pred ccccCCCcccccCCCC
Q 006018 638 KTLSNSSTLLTRSSKH 653 (664)
Q Consensus 638 ~~L~ls~N~l~~~~~~ 653 (664)
+.|++++|.+++..|.
T Consensus 497 ~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 497 QVLNMASNQLKSVPDG 512 (570)
T ss_dssp CEEECCSSCCSCCCTT
T ss_pred CEEeCCCCcCCCCCHH
Confidence 9999999999987654
No 81
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=2.5e-13 Score=152.13 Aligned_cols=89 Identities=16% Similarity=0.139 Sum_probs=61.9
Q ss_pred ccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEee
Q 006018 552 RLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHA 631 (664)
Q Consensus 552 ~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~ 631 (664)
.+..+++|+.|+|++|.+.+..|..++.+++|++|+|++|.++.+|..+..+++|+.|+|++|.+. .+|. .+
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~-------~~ 320 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVER-------NQ 320 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGG-------GH
T ss_pred hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCc-------cc
Confidence 355667777777777776666677777788888888888888777777777778888888877654 4444 23
Q ss_pred eCCCCCccccCCCcccc
Q 006018 632 RHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 632 ~~~~~L~~L~ls~N~l~ 648 (664)
..+++|+.|++++|.|+
T Consensus 321 ~~l~~L~~L~L~~N~l~ 337 (597)
T 3oja_B 321 PQFDRLENLYLDHNSIV 337 (597)
T ss_dssp HHHTTCSEEECCSSCCC
T ss_pred ccCCCCCEEECCCCCCC
Confidence 44555666666665554
No 82
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=2.8e-13 Score=132.04 Aligned_cols=147 Identities=25% Similarity=0.289 Sum_probs=121.6
Q ss_pred ceeccccCccCCCccCcCcccEEEcCCCCCCcccccccc---cccccccccccccccccc-cCCCCCCcEEeecCCCCCC
Q 006018 472 IYQVLNENTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSS-IGNLSRLVDLDLTNCSGLK 547 (664)
Q Consensus 472 ~~~~~~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~ 547 (664)
+...-+....+|..+. ++|+.|++++|.+.+..|..+. +|+.|+|++|.+..+|.. +..+++|++|+|++|....
T Consensus 24 v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 102 (229)
T 3e6j_A 24 VDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102 (229)
T ss_dssp EECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred eEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc
Confidence 3334455667887654 8999999999987766565543 899999999999999864 6899999999999976554
Q ss_pred ccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCCCcC
Q 006018 548 SVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNCKRLQSL 620 (664)
Q Consensus 548 ~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l 620 (664)
..+..+..+++|+.|+|++|. +..+|..+..+++|++|+|++|.++.+|. .+..+++|+.|+|++|+.....
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 444557899999999999998 55889999999999999999999999885 5789999999999999865543
No 83
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.49 E-value=6.9e-14 Score=143.61 Aligned_cols=151 Identities=16% Similarity=0.102 Sum_probs=119.9
Q ss_pred cCcccEEEcCCCCCCccccccccccccccccccccccccc-ccCCCCCCcEEeecCCCCCCcccccc-CCCCCCCEEeee
Q 006018 488 LDSLKELYLGGCSNLKRFPEISCNIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSSRL-CNLKSLRRLNLS 565 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~L~ 565 (664)
+++|+.|++++|......+..+.+|+.|++++|.++.+++ .+..+++|++|++++|......+..+ ..+++|++|+|+
T Consensus 98 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 98 GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 3678888888887766666666688999999999987755 67788999999999876655555555 468899999999
Q ss_pred CCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCc
Q 006018 566 GCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSST 645 (664)
Q Consensus 566 ~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N 645 (664)
+|.+ ..+|. ...+++|++|++++|.++.+|+.+..+++|+.|+|++|++. .+|. .+..+++|+.|++++|
T Consensus 178 ~N~l-~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~-------~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 178 YNFI-YDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK-------ALRFSQNLEHFDLRGN 247 (317)
T ss_dssp TSCC-CEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECT-------TCCCCTTCCEEECTTC
T ss_pred CCcC-ccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhh-------HhhcCCCCCEEEccCC
Confidence 9884 44443 34588999999999999999888889999999999997654 5666 4677889999999999
Q ss_pred ccc
Q 006018 646 LLT 648 (664)
Q Consensus 646 ~l~ 648 (664)
+++
T Consensus 248 ~~~ 250 (317)
T 3o53_A 248 GFH 250 (317)
T ss_dssp CCB
T ss_pred Ccc
Confidence 887
No 84
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=4e-14 Score=130.89 Aligned_cols=133 Identities=24% Similarity=0.246 Sum_probs=83.0
Q ss_pred ccccccccccccc--ccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEc
Q 006018 511 NIEDLDLKETAIE--ELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNL 588 (664)
Q Consensus 511 ~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l 588 (664)
+|+.|++++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 4555555555555 566666666777777777655 3334 46666777777777777655556666666777777777
Q ss_pred cCCCCcccc--ccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCccccc
Q 006018 589 AEKDFEKIP--SSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTR 649 (664)
Q Consensus 589 ~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~ 649 (664)
++|.++.+| ..+..+++|+.|++++|++....+ .. .-.+..+++|+.|++++|.++.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~-~~---~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND-YR---ESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT-HH---HHHHTTCSSCCEETTEETTSCB
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH-HH---HHHHHhCccCcEecCCCCChhh
Confidence 777777665 566777777777777765543322 00 0034566777777777776653
No 85
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.48 E-value=3.4e-13 Score=151.42 Aligned_cols=139 Identities=24% Similarity=0.200 Sum_probs=66.5
Q ss_pred ccccccccccccccc---ccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccc-cCCCCCCCEE
Q 006018 511 NIEDLDLKETAIEEL---PSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEE-IGNLESLEYL 586 (664)
Q Consensus 511 ~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L 586 (664)
+|+.|++++|.+..+ |..+..+++|++|++++|......|..+..+++|+.|++++|.+.+..|.. +..+++|++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 344444444444433 233444444555555444333333444444555555555554433333222 4445555555
Q ss_pred EccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCCC
Q 006018 587 NLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSKH 653 (664)
Q Consensus 587 ~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~~ 653 (664)
++++|.+... |..+..+++|++|++++|++.+..+..+. .+..+++|+.|++++|.+++..|.
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN----SLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSC----GGGGCTTCCEEECTTSCCCEECTT
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccch----hhccCCCccEEECCCCccCccChh
Confidence 5555555433 33344555555555555544331111000 355677788888888877765543
No 86
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=2.5e-13 Score=131.49 Aligned_cols=141 Identities=18% Similarity=0.155 Sum_probs=118.8
Q ss_pred ccCccCCCccCcCcccEEEcCCCCCCccccc-c---ccccccccccccccccccc-ccCCCCCCcEEeecCCCCCCcccc
Q 006018 477 NENTSLPTGINLDSLKELYLGGCSNLKRFPE-I---SCNIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSS 551 (664)
Q Consensus 477 ~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~-~---~~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~ 551 (664)
+....+|..+ ...++.|++++|.+....+. . ..+|+.|+|++|.++.+++ .+..+++|++|+|++|......+.
T Consensus 21 n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 99 (220)
T 2v70_A 21 QKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK 99 (220)
T ss_dssp SCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred CCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHh
Confidence 4455677654 45678999999986555443 2 2389999999999998876 789999999999999876666666
Q ss_pred ccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCC
Q 006018 552 RLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQ 618 (664)
Q Consensus 552 ~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~ 618 (664)
.+..+++|++|+|++|.+.+..|..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++|+...
T Consensus 100 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 100 MFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp GGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred HhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 799999999999999998877789999999999999999999988 6788999999999999987643
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=7.2e-14 Score=137.22 Aligned_cols=162 Identities=20% Similarity=0.211 Sum_probs=129.3
Q ss_pred CccCCCccCcCcccEEEcCCCCCCccccccc---cccccccccccc-cccccc-ccCCCCCCcEEeecCCCCCCccc-cc
Q 006018 479 NTSLPTGINLDSLKELYLGGCSNLKRFPEIS---CNIEDLDLKETA-IEELPS-SIGNLSRLVDLDLTNCSGLKSVS-SR 552 (664)
Q Consensus 479 ~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~---~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp-~~ 552 (664)
.+.+|. -..+|+.|++++|......+..+ .+|+.|++++|. ++.+++ .+..+++|++|++++|+.+..+| ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 556777 34589999999998554434333 389999999997 998886 68899999999999845566665 57
Q ss_pred cCCCCCCCEEeeeCCCCCCccccccCCCCCCC---EEEccCC-CCcccccc-ccCCCCCC-EEeecCCCCCCcCCCCCCC
Q 006018 553 LCNLKSLRRLNLSGCLKLEKLPEEIGNLESLE---YLNLAEK-DFEKIPSS-MKQLSKLS-DLRLQNCKRLQSLPELPCG 626 (664)
Q Consensus 553 ~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~---~L~l~~n-~i~~lp~~-i~~L~~L~-~L~L~~~~~l~~lp~l~~~ 626 (664)
+.++++|++|++++|.+ ..+|. +..+.+|+ +|++++| .++.+|.. +.++++|+ .|++++|.+. .+|..
T Consensus 101 f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~--- 174 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY--- 174 (239)
T ss_dssp EECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTT---
T ss_pred hCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHh---
Confidence 88999999999999985 45786 88889998 9999999 99998864 88999999 9999998765 67662
Q ss_pred CEEeeeCCCCCccccCCCcc-cccCCC
Q 006018 627 SSIHARHCTSLKTLSNSSTL-LTRSSK 652 (664)
Q Consensus 627 ~~l~~~~~~~L~~L~ls~N~-l~~~~~ 652 (664)
.+.. ++|+.|++++|+ +++..+
T Consensus 175 ---~~~~-~~L~~L~L~~n~~l~~i~~ 197 (239)
T 2xwt_C 175 ---AFNG-TKLDAVYLNKNKYLTVIDK 197 (239)
T ss_dssp ---TTTT-CEEEEEECTTCTTCCEECT
T ss_pred ---hcCC-CCCCEEEcCCCCCcccCCH
Confidence 2333 789999999995 875433
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=1.5e-13 Score=143.84 Aligned_cols=156 Identities=20% Similarity=0.149 Sum_probs=124.1
Q ss_pred ccEEEcCCCCCCcccccccc-cccccccccccccccccc-cC-CCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCC
Q 006018 491 LKELYLGGCSNLKRFPEISC-NIEDLDLKETAIEELPSS-IG-NLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGC 567 (664)
Q Consensus 491 L~~L~l~~~~~~~~~p~~~~-~L~~L~l~~~~i~~lp~~-~~-~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~ 567 (664)
-+.++++++. +..+|..+. .++.|+|++|.++.++.. +. .+++|+.|+|++|......+..+.++++|++|+|++|
T Consensus 20 ~~~l~c~~~~-l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 20 SNILSCSKQQ-LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TTEEECCSSC-CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCC-cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 3678998875 556776554 799999999999998875 44 8999999999987655555567999999999999999
Q ss_pred CCCCccccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcc
Q 006018 568 LKLEKLPEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTL 646 (664)
Q Consensus 568 ~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~ 646 (664)
.+....+..+.++++|++|+|++|.+..+ |..|.++++|+.|+|++|.+.. +|..... .+..+++|+.|++++|.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~---~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIK---DGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC-------CTTCCEEECCSSC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhc---CcccCCcCCEEECCCCC
Confidence 96555556789999999999999999987 5678999999999999986544 5541000 11568999999999999
Q ss_pred cccCC
Q 006018 647 LTRSS 651 (664)
Q Consensus 647 l~~~~ 651 (664)
|+...
T Consensus 175 l~~l~ 179 (361)
T 2xot_A 175 LKKLP 179 (361)
T ss_dssp CCCCC
T ss_pred CCccC
Confidence 98644
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.48 E-value=7.1e-14 Score=155.04 Aligned_cols=172 Identities=23% Similarity=0.213 Sum_probs=127.7
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCcccccccc---cccccccccccccccc-cccCCCCCCcEEeecCCCCCCcccccc
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELP-SSIGNLSRLVDLDLTNCSGLKSVSSRL 553 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~ 553 (664)
..+.+|+.+. ++|++|++++|......|..+. +|++|++++|.+..++ ..+..+++|++|++++|......|..+
T Consensus 16 ~l~~ip~~~~-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 16 SFTSIPSGLT-AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp CCSSCCSCCC-TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred ccccccccCC-CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 4456676553 7888899988876555454443 7888888888888776 468888889999998876555555558
Q ss_pred CCCCCCCEEeeeCCCCCC-ccccccCCCCCCCEEEccCCC-Ccccc-ccccCCCCCCEEeecCCCCCCcCCCCCCC----
Q 006018 554 CNLKSLRRLNLSGCLKLE-KLPEEIGNLESLEYLNLAEKD-FEKIP-SSMKQLSKLSDLRLQNCKRLQSLPELPCG---- 626 (664)
Q Consensus 554 ~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L~~L~l~~n~-i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~l~~~---- 626 (664)
.++++|++|++++|.+.+ ..|..++++++|++|++++|. +..+| ..+.++++|++|++++|.+.+..|.....
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccC
Confidence 888889999998887554 456778888889999998887 66776 46888888888888888877666553222
Q ss_pred CEEee-------------eCCCCCccccCCCcccccC
Q 006018 627 SSIHA-------------RHCTSLKTLSNSSTLLTRS 650 (664)
Q Consensus 627 ~~l~~-------------~~~~~L~~L~ls~N~l~~~ 650 (664)
+.+.+ ..+++|+.|++++|.+++.
T Consensus 175 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp EEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred ceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 33333 3478999999999998874
No 90
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.47 E-value=4.7e-13 Score=141.63 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=57.3
Q ss_pred cCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeee
Q 006018 553 LCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHAR 632 (664)
Q Consensus 553 ~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~ 632 (664)
+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++.+|..+..+++|+.|+|++|++. .+|. .+.
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-------~~~ 315 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVER-------NQP 315 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGG-------GHH
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCc-------ccc
Confidence 45566777777777766555666777777777777777777777766667777777777776543 3443 234
Q ss_pred CCCCCccccCCCcccc
Q 006018 633 HCTSLKTLSNSSTLLT 648 (664)
Q Consensus 633 ~~~~L~~L~ls~N~l~ 648 (664)
.+++|+.|++++|.++
T Consensus 316 ~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIV 331 (390)
T ss_dssp HHTTCSEEECCSSCCC
T ss_pred ccCcCCEEECCCCccc
Confidence 4455555555555554
No 91
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=8.1e-14 Score=151.72 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=120.5
Q ss_pred CcccEEEcCCCCCCccccccccccccccccccccccc-ccccCCCCCCcEEeecCCCCCCccccccC-CCCCCCEEeeeC
Q 006018 489 DSLKELYLGGCSNLKRFPEISCNIEDLDLKETAIEEL-PSSIGNLSRLVDLDLTNCSGLKSVSSRLC-NLKSLRRLNLSG 566 (664)
Q Consensus 489 ~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~L~~ 566 (664)
++|+.|++++|......+..+.+|+.|++++|.+..+ |..++.+++|++|+|++|......|..+. .+++|+.|+|++
T Consensus 99 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~ 178 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178 (487)
T ss_dssp TTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred CCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence 6788888888877666666666889999999998876 44678889999999998776666676665 789999999999
Q ss_pred CCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcc
Q 006018 567 CLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTL 646 (664)
Q Consensus 567 ~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~ 646 (664)
|.+.+ +|. ...+++|++|+|++|.++.+|+.+..+++|+.|+|++|.+. .+|. .+..+++|+.|++++|.
T Consensus 179 N~l~~-~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-------~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 179 NFIYD-VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK-------ALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SCCCE-EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECT-------TCCCCTTCCEEECTTCC
T ss_pred Ccccc-ccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccch-------hhccCCCCCEEEcCCCC
Confidence 88544 443 44688999999999999998888889999999999997765 4666 46778899999999998
Q ss_pred cc
Q 006018 647 LT 648 (664)
Q Consensus 647 l~ 648 (664)
++
T Consensus 249 l~ 250 (487)
T 3oja_A 249 FH 250 (487)
T ss_dssp BC
T ss_pred Cc
Confidence 87
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.47 E-value=1.4e-13 Score=153.02 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=134.0
Q ss_pred CcCcccEEEcCCCCCCcccccccc---cccccccccccccccc---cccCCCCCCcEEeecCCCCCCcccc-ccCCCCCC
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELP---SSIGNLSRLVDLDLTNCSGLKSVSS-RLCNLKSL 559 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~l~~lp~-~~~~l~~L 559 (664)
.+++|+.|++++|...+.+|..+. +|+.|++++|.++.++ ..+..+++|++|++++|.....+|. .+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 578999999999988776776554 8999999999998654 5689999999999999876664664 47889999
Q ss_pred CEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCcc
Q 006018 560 RRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKT 639 (664)
Q Consensus 560 ~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~ 639 (664)
+.|++++|.+.+..|..+. ++|++|++++|.++.+|..+.++++|+.|+|++|++. .+|.. .+..+++|+.
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~------~~~~l~~L~~ 501 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDG------VFDRLTSLQY 501 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTT------STTTCTTCCC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHH------HHhcCCCCCE
Confidence 9999999998777777665 7999999999999999999999999999999998765 67662 3678999999
Q ss_pred ccCCCcccccCCC
Q 006018 640 LSNSSTLLTRSSK 652 (664)
Q Consensus 640 L~ls~N~l~~~~~ 652 (664)
|++++|++++..|
T Consensus 502 L~l~~N~~~c~c~ 514 (562)
T 3a79_B 502 IWLHDNPWDCTCP 514 (562)
T ss_dssp EECCSCCBCCCHH
T ss_pred EEecCCCcCCCcc
Confidence 9999999987554
No 93
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.47 E-value=7.8e-14 Score=142.84 Aligned_cols=159 Identities=19% Similarity=0.183 Sum_probs=104.7
Q ss_pred cCcccEEEcCCCCCCccccccc-----ccccccccccccccccccccCCC-----CCCcEEeecCCCCCCccccccCCCC
Q 006018 488 LDSLKELYLGGCSNLKRFPEIS-----CNIEDLDLKETAIEELPSSIGNL-----SRLVDLDLTNCSGLKSVSSRLCNLK 557 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~-----~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~l~~lp~~~~~l~ 557 (664)
+++|+.|++++|...+.+|..+ .+|+.|++++|.++.+|..++.+ ++|++|++++|......|..+..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 6677777777777665666543 26777777777777666655555 7777777777665555556777777
Q ss_pred CCCEEeeeCCCCCCc--ccccc--CCCCCCCEEEccCCCCcccc---cc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEE
Q 006018 558 SLRRLNLSGCLKLEK--LPEEI--GNLESLEYLNLAEKDFEKIP---SS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSI 629 (664)
Q Consensus 558 ~L~~L~L~~~~~~~~--~p~~l--~~l~~L~~L~l~~n~i~~lp---~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l 629 (664)
+|++|++++|.+.+. +|..+ ..+++|++|++++|.++.+| .. +.++++|+.|++++|++.+..|..
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------ 247 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP------ 247 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS------
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh------
Confidence 777777777775544 33344 67777777777777777433 22 356677777777777665544321
Q ss_pred eeeCCCCCccccCCCcccccCCCC
Q 006018 630 HARHCTSLKTLSNSSTLLTRSSKH 653 (664)
Q Consensus 630 ~~~~~~~L~~L~ls~N~l~~~~~~ 653 (664)
.+..+++|+.|++++|.|+ .+|.
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCS
T ss_pred hhhhcCCCCEEECCCCccC-hhhh
Confidence 2445677777777777777 3443
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.46 E-value=8.8e-14 Score=151.42 Aligned_cols=150 Identities=17% Similarity=0.057 Sum_probs=106.7
Q ss_pred cCcccEEEcCCCCCCcccccccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCC
Q 006018 488 LDSLKELYLGGCSNLKRFPEISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGC 567 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~ 567 (664)
+++|+.|++++|.+ ..+|.. .+|+.|++++|.+..++. ..+++|+.|++++|......|..+..+++|++|+|++|
T Consensus 79 l~~L~~L~Ls~N~l-~~l~~~-~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 79 LSTLRTLDLNNNYV-QELLVG-PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp CTTCCEEECCSSEE-EEEEEC-TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred CCCCCEEEecCCcC-CCCCCC-CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence 45555555555532 222221 355556666666655544 24678888888887766666777888888899999888
Q ss_pred CCCCccccccC-CCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcc
Q 006018 568 LKLEKLPEEIG-NLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTL 646 (664)
Q Consensus 568 ~~~~~~p~~l~-~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~ 646 (664)
.+.+..|..+. .+++|++|+|++|.++.+|. +..+++|+.|+|++|.+.+ +|. .+..+++|+.|++++|.
T Consensus 155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-~~~-------~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGP-------EFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECG-------GGGGGTTCSEEECTTSC
T ss_pred CCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC-CCH-------hHcCCCCccEEEecCCc
Confidence 87777777775 78889999999888888764 4468889999998876554 444 46778999999999999
Q ss_pred cccC
Q 006018 647 LTRS 650 (664)
Q Consensus 647 l~~~ 650 (664)
|++.
T Consensus 226 l~~l 229 (487)
T 3oja_A 226 LVLI 229 (487)
T ss_dssp CCEE
T ss_pred Cccc
Confidence 9863
No 95
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.46 E-value=1.8e-13 Score=153.74 Aligned_cols=167 Identities=23% Similarity=0.232 Sum_probs=127.3
Q ss_pred ccCCCc-c-CcCcccEEEcCCCCCCcccccccc---ccccccccccccccc-ccccCCCCCCcEEeecCCCCCCcccc-c
Q 006018 480 TSLPTG-I-NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEEL-PSSIGNLSRLVDLDLTNCSGLKSVSS-R 552 (664)
Q Consensus 480 ~~lp~~-~-~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~-~ 552 (664)
..+++. + .+++|+.|++++|.. ..+|..+. +|+.|++++|.+..+ |..+..+++|++|++++|.....+|. .
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred CccCHHHhccccCCCEEeccCCcc-CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 344443 2 478888899988864 46666544 788888888888876 44778888899999988876656654 4
Q ss_pred cCCCCCCCEEeeeCCCCCCcc--ccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEE
Q 006018 553 LCNLKSLRRLNLSGCLKLEKL--PEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSI 629 (664)
Q Consensus 553 ~~~l~~L~~L~L~~~~~~~~~--p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l 629 (664)
+..+++|+.|++++|.+.+.. |..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.+....|..
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~------ 419 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS------ 419 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC------
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch------
Confidence 788889999999888865544 66788888999999998888865 557788889999999988776655541
Q ss_pred eeeCCCCCccccCCCcccccCCCC
Q 006018 630 HARHCTSLKTLSNSSTLLTRSSKH 653 (664)
Q Consensus 630 ~~~~~~~L~~L~ls~N~l~~~~~~ 653 (664)
.+..+++|+.|++++|.+++..|.
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~ 443 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQ 443 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTT
T ss_pred hhhCcccCCEEECCCCccCCcCHH
Confidence 366789999999999998876544
No 96
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.46 E-value=2.2e-13 Score=153.63 Aligned_cols=146 Identities=23% Similarity=0.254 Sum_probs=122.7
Q ss_pred CCcccccccc-ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccC
Q 006018 501 NLKRFPEISC-NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIG 578 (664)
Q Consensus 501 ~~~~~p~~~~-~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~ 578 (664)
.+..+|..++ +++.|+|++|.|+.+|+ +|.++++|++|+|++|......|..|.++++|++|+|++|.+.+..|..|.
T Consensus 42 ~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 42 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp CCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred CcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 4667787665 89999999999999986 689999999999999765444456799999999999999985444445789
Q ss_pred CCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCCC-cCCCCCCCCEEeeeCCCCCccccCCCcccccCCCC
Q 006018 579 NLESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNCKRLQ-SLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSKH 653 (664)
Q Consensus 579 ~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~-~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~~ 653 (664)
++++|++|++++|.++.+|+ .|+++++|++|+|++|.+.. .+|. .+..+++|+.|++++|.|++..|.
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-------~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-------YFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-------GGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-------hhccchhhhhhcccCccccccccc
Confidence 99999999999999999876 58999999999999987654 3555 577899999999999999876554
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=3.5e-13 Score=136.38 Aligned_cols=148 Identities=24% Similarity=0.299 Sum_probs=124.6
Q ss_pred CcCcccEEEcCCCCCCccccccc--ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEee
Q 006018 487 NLDSLKELYLGGCSNLKRFPEIS--CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNL 564 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 564 (664)
.+++|+.|++++|.. ..++... .+|+.|++++|.++.+++ +..+++|++|++++|. +..+| .+..+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEEC
Confidence 478899999999864 4455433 389999999999999887 9999999999999865 55566 5999999999999
Q ss_pred eCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCC
Q 006018 565 SGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSS 644 (664)
Q Consensus 565 ~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~ 644 (664)
++|.+.. + +.+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+.. ++. +..+++|+.|++++
T Consensus 120 ~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~--------l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 120 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--------LAGLTKLQNLYLSK 187 (291)
T ss_dssp TTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG--------GTTCTTCCEEECCS
T ss_pred CCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-chh--------hcCCCccCEEECCC
Confidence 9998544 4 4688999999999999999988 579999999999999987654 332 56789999999999
Q ss_pred cccccC
Q 006018 645 TLLTRS 650 (664)
Q Consensus 645 N~l~~~ 650 (664)
|.+++.
T Consensus 188 N~i~~l 193 (291)
T 1h6t_A 188 NHISDL 193 (291)
T ss_dssp SCCCBC
T ss_pred CcCCCC
Confidence 999864
No 98
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=7.9e-14 Score=126.06 Aligned_cols=128 Identities=22% Similarity=0.270 Sum_probs=95.3
Q ss_pred ccccccccccccc--ccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEc
Q 006018 511 NIEDLDLKETAIE--ELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNL 588 (664)
Q Consensus 511 ~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l 588 (664)
+++.|++++|.+. .+|..+..+++|++|++++|. +..+ ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 5666777777776 677777888888888888864 4444 57888888888888888866667877777888899999
Q ss_pred cCCCCcccc--ccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCC
Q 006018 589 AEKDFEKIP--SSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSS 644 (664)
Q Consensus 589 ~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~ 644 (664)
++|.++.+| ..+..+++|++|++++|++... |..+. -.+..+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~---~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL-NDYRE---NVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS-TTHHH---HHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccch-HHHHH---HHHHHCCCcccccCCC
Confidence 888888765 7788888889999888765433 32000 0366788888888763
No 99
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.45 E-value=1.4e-13 Score=152.76 Aligned_cols=159 Identities=22% Similarity=0.214 Sum_probs=130.8
Q ss_pred CcccEEEcCCCCCCcccccccc-cccccccccccccccc-cccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeC
Q 006018 489 DSLKELYLGGCSNLKRFPEISC-NIEDLDLKETAIEELP-SSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSG 566 (664)
Q Consensus 489 ~~L~~L~l~~~~~~~~~p~~~~-~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~ 566 (664)
+.....+.+++. +..+|.... +|+.|++++|.++.++ ..+..+++|++|++++|......|..+.++++|++|+|++
T Consensus 5 ~~~~~c~~~~~~-l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 5 DASGVCDGRSRS-FTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp CTTSEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCceEECCCCc-cccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 334445666665 556665444 8999999999999875 5799999999999999876666667899999999999999
Q ss_pred CCCCCccccccCCCCCCCEEEccCCCCcc--ccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCC
Q 006018 567 CLKLEKLPEEIGNLESLEYLNLAEKDFEK--IPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSS 644 (664)
Q Consensus 567 ~~~~~~~p~~l~~l~~L~~L~l~~n~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~ 644 (664)
|.+.+..|..++++++|++|++++|.++. +|..+.++++|++|++++|...+.+|.. .+.++++|+.|++++
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~------~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRI------DFAGLTSLNELEIKA 157 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT------TTTTCCEEEEEEEEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHh------hhhcccccCeeeccC
Confidence 99776666679999999999999999985 4678999999999999999877777742 467788899999999
Q ss_pred cccccCCCCC
Q 006018 645 TLLTRSSKHW 654 (664)
Q Consensus 645 N~l~~~~~~~ 654 (664)
|.+++..|.+
T Consensus 158 n~l~~~~~~~ 167 (549)
T 2z81_A 158 LSLRNYQSQS 167 (549)
T ss_dssp TTCCEECTTT
T ss_pred CcccccChhh
Confidence 9888765543
No 100
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.44 E-value=5.5e-13 Score=126.11 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=92.4
Q ss_pred ccccccccccccccccccCCCCCCcEEeecCCCCCCcccc--ccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEcc
Q 006018 512 IEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSS--RLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLA 589 (664)
Q Consensus 512 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~--~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~ 589 (664)
.+.++++++.++.+|..+.. +|+.|++++|. +..++. .+..+++|++|+|++|.+.+..|..+.++++|++|+|+
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45677777777777775543 77777877754 344443 36777778888887777666667777777778888888
Q ss_pred CCCCcccccc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCC
Q 006018 590 EKDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 590 ~n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
+|.++.+|.. +.++++|++|+|++|++.+..|. .+..+++|+.|++++|++++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG-------SFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT-------SSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH-------HhhcCCCCCEEEeCCCCccCcCc
Confidence 8777766543 67777788888877776666665 46667777778888877775543
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=2.7e-13 Score=125.25 Aligned_cols=132 Identities=24% Similarity=0.358 Sum_probs=112.6
Q ss_pred cCcccEEEcCCCCCC-cccccccc---cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEe
Q 006018 488 LDSLKELYLGGCSNL-KRFPEISC---NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLN 563 (664)
Q Consensus 488 l~~L~~L~l~~~~~~-~~~p~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 563 (664)
.++|+.|++++|... +.+|..+. +|+.|++++|.++.+ ..+..+++|++|++++|.....+|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 468999999999865 47776643 899999999999988 7889999999999999876666887777899999999
Q ss_pred eeCCCCCCccc--cccCCCCCCCEEEccCCCCccccc----cccCCCCCCEEeecCCCCCCcCCC
Q 006018 564 LSGCLKLEKLP--EEIGNLESLEYLNLAEKDFEKIPS----SMKQLSKLSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 564 L~~~~~~~~~p--~~l~~l~~L~~L~l~~n~i~~lp~----~i~~L~~L~~L~L~~~~~l~~lp~ 622 (664)
+++|.+ ..+| ..+..+++|++|++++|.++.+|. .+..+++|++|++++|.. ..+|.
T Consensus 102 Ls~N~l-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~ 164 (168)
T 2ell_A 102 LSGNKL-KDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED-QEAPD 164 (168)
T ss_dssp CBSSSC-CSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS-CBCCS
T ss_pred ccCCcc-CcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh-hhccc
Confidence 999985 4444 789999999999999999999987 789999999999999864 44443
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.44 E-value=2.8e-13 Score=149.03 Aligned_cols=151 Identities=22% Similarity=0.235 Sum_probs=115.5
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCcccccccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCC
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLK 557 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 557 (664)
....+| -.+++|+.|++++|.+.. +|....+|+.|++++|.++.+|. .+++|+.|++++|. +..+|. .++
T Consensus 91 ~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~ 160 (571)
T 3cvr_A 91 ALISLP--ELPASLEYLDACDNRLST-LPELPASLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE---LPT 160 (571)
T ss_dssp CCSCCC--CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCT
T ss_pred CCcccc--cccCCCCEEEccCCCCCC-cchhhcCCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC---cCC
Confidence 344566 337889999999987554 77733389999999999988887 68899999999865 455775 678
Q ss_pred CCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCC-------CEEeecCCCCCCcCCCCCCCCEEe
Q 006018 558 SLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKL-------SDLRLQNCKRLQSLPELPCGSSIH 630 (664)
Q Consensus 558 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L-------~~L~L~~~~~l~~lp~l~~~~~l~ 630 (664)
+|+.|+|++|.+. .+|. +. ++|++|+|++|.|+.+|. +.. +| +.|+|++|++. .+|. .
T Consensus 161 ~L~~L~Ls~N~L~-~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~-------~ 225 (571)
T 3cvr_A 161 SLEVLSVRNNQLT-FLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPE-------N 225 (571)
T ss_dssp TCCEEECCSSCCS-CCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCG-------G
T ss_pred CcCEEECCCCCCC-Ccch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCH-------H
Confidence 8999999998844 4777 65 889999999999998887 654 67 99999997654 5666 5
Q ss_pred eeCCCCCccccCCCcccccCCCC
Q 006018 631 ARHCTSLKTLSNSSTLLTRSSKH 653 (664)
Q Consensus 631 ~~~~~~L~~L~ls~N~l~~~~~~ 653 (664)
+..+++|+.|++++|.|++..|.
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHH
Confidence 66789999999999999875443
No 103
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.43 E-value=3.4e-13 Score=153.67 Aligned_cols=167 Identities=22% Similarity=0.179 Sum_probs=95.2
Q ss_pred CccCCCccCcCcccEEEcCCCCCCcccccccc---ccccccccccccccc-ccccCCCCCCcEEeecCCCCCCcccc-cc
Q 006018 479 NTSLPTGINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEEL-PSSIGNLSRLVDLDLTNCSGLKSVSS-RL 553 (664)
Q Consensus 479 ~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~-~~ 553 (664)
...+|..+. ++++.|++++|......+..+. +|+.|++++|.+..+ |..++++++|++|++++|. +..+|. .+
T Consensus 16 L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~ 93 (680)
T 1ziw_A 16 LTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTF 93 (680)
T ss_dssp CSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTT
T ss_pred ccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhh
Confidence 344554442 5666777776654433332222 566667776666655 3345666677777776654 333443 46
Q ss_pred CCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccc-cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeee
Q 006018 554 CNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKI-PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHAR 632 (664)
Q Consensus 554 ~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~ 632 (664)
.++++|++|+|++|.+.+..|..++++++|++|++++|.+..+ |..+.++++|++|++++|.+.+..|.. +...
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~~ 168 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE-----LDIF 168 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH-----HGGG
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH-----hhcc
Confidence 6667777777776665444445666667777777776666644 344566667777777666544333220 0112
Q ss_pred CCCCCccccCCCcccccCCC
Q 006018 633 HCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 633 ~~~~L~~L~ls~N~l~~~~~ 652 (664)
.+++|+.|++++|.+++..|
T Consensus 169 ~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp TTCEESEEECTTCCCCCBCT
T ss_pred ccccccEEECCCCcccccCh
Confidence 34666666666666665544
No 104
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.43 E-value=8.2e-13 Score=137.36 Aligned_cols=153 Identities=23% Similarity=0.275 Sum_probs=102.3
Q ss_pred cCcCcccEEEcCCCCCCccccccc--ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEe
Q 006018 486 INLDSLKELYLGGCSNLKRFPEIS--CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLN 563 (664)
Q Consensus 486 ~~l~~L~~L~l~~~~~~~~~p~~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 563 (664)
..+++|+.|++++|... .++... .+|+.|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|+.|+
T Consensus 174 ~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~ 249 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLE 249 (347)
T ss_dssp GGCTTCSEEECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEE
T ss_pred ccCCCCCEEEccCCccc-ccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEE
Confidence 34666777777776533 233221 266677777777766655 6677777777777754 344443 67777777777
Q ss_pred eeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCC
Q 006018 564 LSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNS 643 (664)
Q Consensus 564 L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls 643 (664)
+++|.+.. + +.+..+++|++|++++|.++.+| .+..+++|+.|++++|++....|. .+.++++|+.|+++
T Consensus 250 l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~-------~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 250 IGTNQISD-I-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDME-------VIGGLTNLTTLFLS 319 (347)
T ss_dssp CCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHH-------HHHTCTTCSEEECC
T ss_pred CCCCccCC-C-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChh-------HhhccccCCEEEcc
Confidence 77776433 3 35677777778888777777764 467777788888877776655555 56677888888888
Q ss_pred CcccccCCC
Q 006018 644 STLLTRSSK 652 (664)
Q Consensus 644 ~N~l~~~~~ 652 (664)
+|.+++..|
T Consensus 320 ~n~l~~~~~ 328 (347)
T 4fmz_A 320 QNHITDIRP 328 (347)
T ss_dssp SSSCCCCGG
T ss_pred CCccccccC
Confidence 888876544
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=141.17 Aligned_cols=151 Identities=17% Similarity=0.140 Sum_probs=122.9
Q ss_pred CcCcccEEEcCCCCCCcccccccc---cccccccccccccc---ccc--ccCCCCCCcEEeecCCCCCCcccc----ccC
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEE---LPS--SIGNLSRLVDLDLTNCSGLKSVSS----RLC 554 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~---lp~--~~~~l~~L~~L~l~~~~~l~~lp~----~~~ 554 (664)
.+++|+.|++++|......|..+. +|+.|++++|.+.. ++. .+..+++|++|++++|.. ..+|. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHh
Confidence 488999999999987665555443 89999999999753 443 347899999999999754 55553 256
Q ss_pred CCCCCCEEeeeCCCCCCccccccCCC---CCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEee
Q 006018 555 NLKSLRRLNLSGCLKLEKLPEEIGNL---ESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHA 631 (664)
Q Consensus 555 ~l~~L~~L~L~~~~~~~~~p~~l~~l---~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~ 631 (664)
.+++|++|+|++|.+.+..|..+..+ ++|++|++++|.++.+|..+. ++|+.|+|++|++.+ +|. +
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~--------~ 290 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-APQ--------P 290 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CCC--------T
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-Cch--------h
Confidence 78999999999999777778888777 699999999999999998775 899999999987654 343 3
Q ss_pred eCCCCCccccCCCccccc
Q 006018 632 RHCTSLKTLSNSSTLLTR 649 (664)
Q Consensus 632 ~~~~~L~~L~ls~N~l~~ 649 (664)
..+++|+.|++++|+++.
T Consensus 291 ~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TSCCCCSCEECSSTTTSC
T ss_pred hhCCCccEEECcCCCCCC
Confidence 467999999999999974
No 106
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.43 E-value=6.9e-13 Score=125.42 Aligned_cols=124 Identities=23% Similarity=0.258 Sum_probs=100.2
Q ss_pred cEEEcCCCCCCcccccccc-cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCC
Q 006018 492 KELYLGGCSNLKRFPEISC-NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKL 570 (664)
Q Consensus 492 ~~L~l~~~~~~~~~p~~~~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~ 570 (664)
+.++++++. +..+|.... +|+.|++++|.++.+|..+..+++|+.|+|++|......+..|.++++|++|+|++|.+.
T Consensus 13 ~~l~~~~~~-l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSC-CSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCC-CCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 567888775 445665443 888999999999988888888999999999987665555567888999999999998866
Q ss_pred CccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCC
Q 006018 571 EKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNCKR 616 (664)
Q Consensus 571 ~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~~~ 616 (664)
...|..+..+++|++|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 66666788899999999999999988764 77888999999988764
No 107
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.42 E-value=2.9e-12 Score=133.18 Aligned_cols=176 Identities=22% Similarity=0.319 Sum_probs=104.8
Q ss_pred ccCCCccCcCcccEEEcCCCCCCccccccc--ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCC
Q 006018 480 TSLPTGINLDSLKELYLGGCSNLKRFPEIS--CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLK 557 (664)
Q Consensus 480 ~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 557 (664)
..+|....+++|+.|++++|... .++... .+|+.|++++|.++.+| .+..+++|++|++++|. +..++. +..++
T Consensus 57 ~~~~~~~~~~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~-~~~l~ 132 (347)
T 4fmz_A 57 ASIQGIEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP-LANLT 132 (347)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGG-GTTCT
T ss_pred ccchhhhhcCCccEEEccCCccc-cchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchh-hccCC
Confidence 34444344677777777776533 333322 26777777777776664 46677777777777654 344443 66677
Q ss_pred CCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCC---CCCCCEEe----
Q 006018 558 SLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPE---LPCGSSIH---- 630 (664)
Q Consensus 558 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~---l~~~~~l~---- 630 (664)
+|+.|++++|.....++ .+..+++|++|++++|.+..++. +..+++|+.|++++|.+.. ++. ++..+.+.
T Consensus 133 ~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED-ISPLASLTSLHYFTAYVN 209 (347)
T ss_dssp TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCC-CGGGGGCTTCCEEECCSS
T ss_pred ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccc-cccccCCCccceeecccC
Confidence 77777777765454443 36667777777777776666654 6666777777777665432 211 11111111
Q ss_pred -------eeCCCCCccccCCCcccccCC-----CCCceEEccCC
Q 006018 631 -------ARHCTSLKTLSNSSTLLTRSS-----KHWDIFNFSNC 662 (664)
Q Consensus 631 -------~~~~~~L~~L~ls~N~l~~~~-----~~~~~~~~~~c 662 (664)
+..+++|+.|++++|.+++.. |....+++.+|
T Consensus 210 ~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 210 QITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN 253 (347)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC
Confidence 456788888888888887543 34445555444
No 108
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.42 E-value=1e-12 Score=149.73 Aligned_cols=144 Identities=22% Similarity=0.215 Sum_probs=115.1
Q ss_pred cCccCCCc--cCcCcccEEEcCCCCCCcccccccc---ccccccccccccccccc-ccCCCCCCcEEeecCCCCCCcccc
Q 006018 478 ENTSLPTG--INLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLKSVSS 551 (664)
Q Consensus 478 ~~~~lp~~--~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~ 551 (664)
....+|+. ..+++|+.|++++|...+..|..+. +|+.|++++|.+..+|+ .++++++|++|++++|......|.
T Consensus 36 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~ 115 (680)
T 1ziw_A 36 QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115 (680)
T ss_dssp CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSC
T ss_pred CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChh
Confidence 33455543 2588999999999987666665543 78999999999999987 588999999999998766555557
Q ss_pred ccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccccc-c--cCCCCCCEEeecCCCCCCcCC
Q 006018 552 RLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS-M--KQLSKLSDLRLQNCKRLQSLP 621 (664)
Q Consensus 552 ~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i--~~L~~L~~L~L~~~~~l~~lp 621 (664)
.+.++++|++|++++|.+.+..|..++++++|++|++++|.++.++.. + ..+++|+.|++++|.+.+..|
T Consensus 116 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred HccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 789999999999999988777788889999999999999999877653 3 356889999999987655444
No 109
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.42 E-value=6.6e-13 Score=125.58 Aligned_cols=128 Identities=21% Similarity=0.210 Sum_probs=110.2
Q ss_pred ccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCC
Q 006018 512 IEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEK 591 (664)
Q Consensus 512 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 591 (664)
-+.++++++.++.+|..+. .+|+.|++++| .+..+|..+.++++|+.|+|++|.+....|..|.++++|++|+|++|
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4578899999999998664 68999999986 45688889999999999999999977766678999999999999999
Q ss_pred CCccccc-cccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCccccc
Q 006018 592 DFEKIPS-SMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTR 649 (664)
Q Consensus 592 ~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~ 649 (664)
.++.+|+ .|..+++|+.|+|++|.+.. +|.. .+..+++|+.|++++|+++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~------~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEG------AFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTT------TTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCe-eChh------hhhcCccccEEEeCCCCeec
Confidence 9998875 68999999999999987654 4431 46778999999999999874
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=6.2e-13 Score=147.80 Aligned_cols=159 Identities=24% Similarity=0.329 Sum_probs=130.3
Q ss_pred CcCcccEEEcCCCCCCccccccc--ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEee
Q 006018 487 NLDSLKELYLGGCSNLKRFPEIS--CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNL 564 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 564 (664)
.+++|+.|++++|. +..+|.+. .+|+.|+|++|.+..+++ +..+++|+.|+|++|. +..+| .+..+++|+.|+|
T Consensus 41 ~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEe
Confidence 48889999999987 44555433 389999999999999887 8999999999999864 55666 7899999999999
Q ss_pred eCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCC
Q 006018 565 SGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSS 644 (664)
Q Consensus 565 ~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~ 644 (664)
++|.+.. + +.+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+....| +..|++|+.|++++
T Consensus 117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---------l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 117 EHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---------LAGLTKLQNLYLSK 184 (605)
T ss_dssp TTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---------GTTCTTCCEEECCS
T ss_pred cCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh---------hccCCCCCEEECcC
Confidence 9998544 4 4688999999999999999988 579999999999999987655433 46789999999999
Q ss_pred cccccC-----CCCCceEEccC
Q 006018 645 TLLTRS-----SKHWDIFNFSN 661 (664)
Q Consensus 645 N~l~~~-----~~~~~~~~~~~ 661 (664)
|.|++. ++....+++.+
T Consensus 185 N~i~~l~~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 185 NHISDLRALAGLKNLDVLELFS 206 (605)
T ss_dssp SCCCBCGGGTTCTTCSEEECCS
T ss_pred CCCCCChHHccCCCCCEEEccC
Confidence 999864 33444555544
No 111
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.41 E-value=1.3e-13 Score=157.25 Aligned_cols=135 Identities=20% Similarity=0.173 Sum_probs=98.2
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccC
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAE 590 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 590 (664)
+|+.|+|++|.+..+|..+..+++|++|+|++|.. ..+|..++++++|++|+|++|.+. .+|..+++|++|++|+|++
T Consensus 225 ~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 225 LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence 67778888888877777777788888888887543 477777778888888888887744 6777777888888888888
Q ss_pred CCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCC-CCccccCCCcccccCCCCC
Q 006018 591 KDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCT-SLKTLSNSSTLLTRSSKHW 654 (664)
Q Consensus 591 n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~-~L~~L~ls~N~l~~~~~~~ 654 (664)
|.|+.+|..|.+|++|+.|+|++|++.+.+|. .+..+. .+..+++++|.+++.+|..
T Consensus 303 N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~-------~~~~~~~~~~~l~l~~N~l~~~~p~~ 360 (727)
T 4b8c_D 303 NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK-------ILTEKSVTGLIFYLRDNRPEIPLPHE 360 (727)
T ss_dssp SCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH-------HHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred CCCCccChhhhcCCCccEEeCCCCccCCCChH-------HHhhcchhhhHHhhccCcccCcCccc
Confidence 88888877788888888888888777766665 232221 1234677778877777764
No 112
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.41 E-value=6.5e-14 Score=145.01 Aligned_cols=152 Identities=20% Similarity=0.286 Sum_probs=77.8
Q ss_pred CcCcccEEEcCCCCCCcc-ccccc---cccccccccccccc-ccccccCCCCCCcEEeecCCCCCC--ccccccCCCCCC
Q 006018 487 NLDSLKELYLGGCSNLKR-FPEIS---CNIEDLDLKETAIE-ELPSSIGNLSRLVDLDLTNCSGLK--SVSSRLCNLKSL 559 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~-~p~~~---~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L 559 (664)
.+++|+.|++++|..... +|..+ .+|+.|++++|.+. ..|..++.+++|++|++++|..+. .++..+.++++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 455666666666553322 33222 25666666666554 344455556666666666653333 244445555666
Q ss_pred CEEeeeCC-CCCCc-cccccCCCC-CCCEEEccCCC--C--ccccccccCCCCCCEEeecCCCC-CCcCCCCCCCCEEee
Q 006018 560 RRLNLSGC-LKLEK-LPEEIGNLE-SLEYLNLAEKD--F--EKIPSSMKQLSKLSDLRLQNCKR-LQSLPELPCGSSIHA 631 (664)
Q Consensus 560 ~~L~L~~~-~~~~~-~p~~l~~l~-~L~~L~l~~n~--i--~~lp~~i~~L~~L~~L~L~~~~~-l~~lp~l~~~~~l~~ 631 (664)
++|++++| .+... ++..+..++ +|++|++++|. + ..+|..+.++++|+.|++++|.. ....+. .+
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-------~l 243 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-------EF 243 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-------GG
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-------HH
Confidence 66666665 43222 344455555 66666666553 2 24455555556666666666552 222232 23
Q ss_pred eCCCCCccccCCCc
Q 006018 632 RHCTSLKTLSNSST 645 (664)
Q Consensus 632 ~~~~~L~~L~ls~N 645 (664)
..+++|+.|++++|
T Consensus 244 ~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 244 FQLNYLQHLSLSRC 257 (336)
T ss_dssp GGCTTCCEEECTTC
T ss_pred hCCCCCCEeeCCCC
Confidence 44455555555554
No 113
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=5e-13 Score=137.15 Aligned_cols=151 Identities=17% Similarity=0.062 Sum_probs=110.9
Q ss_pred CcCcccEEEcCCCCCCcccccccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeC
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSG 566 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~ 566 (664)
.+++|+.|++++|.. ..++.. .+|+.|++++|.+..++.. .+++|+.|++++|......|..+..+++|++|++++
T Consensus 78 ~l~~L~~L~Ls~n~l-~~l~~~-~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 78 SLSTLRTLDLNNNYV-QELLVG-PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp TCTTCCEEECCSSEE-EEEEEC-TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred hcCCCCEEECcCCcc-ccccCC-CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence 466666666666652 233321 4667777777777666543 467888899988766555566788889999999999
Q ss_pred CCCCCcccccc-CCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCc
Q 006018 567 CLKLEKLPEEI-GNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSST 645 (664)
Q Consensus 567 ~~~~~~~p~~l-~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N 645 (664)
|.+.+..|..+ ..+++|++|++++|.++.+|. ...+++|+.|+|++|++. .+|. .+..+++|+.|++++|
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~-~l~~-------~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLA-FMGP-------EFQSAAGVTWISLRNN 224 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCC-EECG-------GGGGGTTCSEEECTTS
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCC-cchh-------hhcccCcccEEECcCC
Confidence 88666666665 478899999999999988864 445889999999997654 4554 4678899999999999
Q ss_pred ccccC
Q 006018 646 LLTRS 650 (664)
Q Consensus 646 ~l~~~ 650 (664)
.|+..
T Consensus 225 ~l~~l 229 (317)
T 3o53_A 225 KLVLI 229 (317)
T ss_dssp CCCEE
T ss_pred cccch
Confidence 99853
No 114
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.41 E-value=8.6e-13 Score=153.79 Aligned_cols=161 Identities=25% Similarity=0.250 Sum_probs=134.0
Q ss_pred CcCcccEEEcCCCCCCccc-ccccc---ccccccccccccccc-ccccCCCCCCcEEeecCCCCCCccccc--cCCCCCC
Q 006018 487 NLDSLKELYLGGCSNLKRF-PEISC---NIEDLDLKETAIEEL-PSSIGNLSRLVDLDLTNCSGLKSVSSR--LCNLKSL 559 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~-p~~~~---~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~--~~~l~~L 559 (664)
++++|+.|++++|.....+ |..+. +|+.|+|++|.+..+ |..+.++++|++|+|++|......|.. +.++++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 5999999999999777666 44443 899999999999977 778999999999999998776656654 8999999
Q ss_pred CEEeeeCCCCCCccc-cccCCCCCCCEEEccCCCCccc-cccccCC--CCCCEEeecCCCCCCcCCCCCCCCEEeeeCCC
Q 006018 560 RRLNLSGCLKLEKLP-EEIGNLESLEYLNLAEKDFEKI-PSSMKQL--SKLSDLRLQNCKRLQSLPELPCGSSIHARHCT 635 (664)
Q Consensus 560 ~~L~L~~~~~~~~~p-~~l~~l~~L~~L~l~~n~i~~l-p~~i~~L--~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~ 635 (664)
++|+|++|.+.+..| ..++++++|++|++++|.++.+ |..+..+ ++|+.|++++|.+....|. .+..|+
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-------~~~~~~ 198 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV-------DWGKCM 198 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-------CCCSSS
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc-------chhhcC
Confidence 999999999766544 5799999999999999999854 6677777 8999999999998887776 455555
Q ss_pred C------CccccCCCcccccCCCCC
Q 006018 636 S------LKTLSNSSTLLTRSSKHW 654 (664)
Q Consensus 636 ~------L~~L~ls~N~l~~~~~~~ 654 (664)
+ |+.|++++|.+++..|..
T Consensus 199 ~~~~~~~L~~L~Ls~n~l~~~~~~~ 223 (844)
T 3j0a_A 199 NPFRNMVLEILDVSGNGWTVDITGN 223 (844)
T ss_dssp CTTTTCCBSEEBCSSCCSSTTTTSG
T ss_pred CccccCceeEEecCCCcCchhHHHH
Confidence 4 999999999888766543
No 115
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.40 E-value=9e-13 Score=122.84 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=60.0
Q ss_pred cEEEcCCCCCCccccccc-ccccccccccccccccccc-cCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCC
Q 006018 492 KELYLGGCSNLKRFPEIS-CNIEDLDLKETAIEELPSS-IGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLK 569 (664)
Q Consensus 492 ~~L~l~~~~~~~~~p~~~-~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~ 569 (664)
+.++++++. +..+|... .+|+.|++++|.++.+|.. +..+++|++|++++|......+..+..+++|+.|++++|.+
T Consensus 10 ~~l~~~~~~-l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKG-LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSC-CSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCC-CccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 455555544 22333222 2555555555555555442 34555555555555433222222345555555555555553
Q ss_pred CCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecCCCCC
Q 006018 570 LEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNCKRL 617 (664)
Q Consensus 570 ~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~~~l 617 (664)
.+..+..+..+++|++|++++|.++.+|.. +..+++|++|++++|++.
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 333333345555555555555555555443 244555555555555443
No 116
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.40 E-value=4.6e-12 Score=141.05 Aligned_cols=87 Identities=25% Similarity=0.316 Sum_probs=56.7
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCcccccccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCC
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLK 557 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 557 (664)
....+|. .+++|+.|++++|. +..+|....+|+.|++++|.++.+|. .+++|+.|++++|. +..+|.. ++
T Consensus 72 ~l~~lp~--~l~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~ 141 (622)
T 3g06_A 72 NLTSLPA--LPPELRTLEVSGNQ-LTSLPVLPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PP 141 (622)
T ss_dssp CCSCCCC--CCTTCCEEEECSCC-CSCCCCCCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CT
T ss_pred CCCCCCC--cCCCCCEEEcCCCc-CCcCCCCCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CC
Confidence 3445555 46677777777775 34566655677777777777777766 46677777777653 4556643 47
Q ss_pred CCCEEeeeCCCCCCcccc
Q 006018 558 SLRRLNLSGCLKLEKLPE 575 (664)
Q Consensus 558 ~L~~L~L~~~~~~~~~p~ 575 (664)
+|++|+|++|.+ ..+|.
T Consensus 142 ~L~~L~Ls~N~l-~~l~~ 158 (622)
T 3g06_A 142 GLQELSVSDNQL-ASLPA 158 (622)
T ss_dssp TCCEEECCSSCC-SCCCC
T ss_pred CCCEEECcCCcC-CCcCC
Confidence 788888887763 33443
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.39 E-value=7.5e-12 Score=134.84 Aligned_cols=127 Identities=24% Similarity=0.281 Sum_probs=89.4
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCcccccccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCC
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLK 557 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 557 (664)
....+|....+++|+.|++++|... .+|....+|+.|++++|.++.+| .++.+++|+.|++++|.. ..+|.. .+
T Consensus 142 ~l~~lp~~~~l~~L~~L~l~~N~l~-~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l-~~l~~~---~~ 215 (454)
T 1jl5_A 142 QLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSL-KKLPDL---PL 215 (454)
T ss_dssp CCSSCCCCTTCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC-SSCCCC---CT
T ss_pred CCCCCcccCCCCCCCEEECCCCcCc-ccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcC-CcCCCC---cC
Confidence 4445775456889999999998754 57777778999999999998887 588888888888887653 345532 24
Q ss_pred CCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCC
Q 006018 558 SLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCK 615 (664)
Q Consensus 558 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~ 615 (664)
+|+.|++++|.+ ..+| .++.+++|++|++++|.++.+|.. +++|+.|++++|.
T Consensus 216 ~L~~L~l~~n~l-~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 216 SLESIVAGNNIL-EELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNY 268 (454)
T ss_dssp TCCEEECCSSCC-SSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSC
T ss_pred cccEEECcCCcC-Cccc-ccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCc
Confidence 777777777764 3666 367777777777777777766642 2455555555544
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=3.5e-12 Score=140.28 Aligned_cols=152 Identities=22% Similarity=0.292 Sum_probs=119.4
Q ss_pred cCccCCCccCcCcccEEEcCCCCCCcccccccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCC
Q 006018 478 ENTSLPTGINLDSLKELYLGGCSNLKRFPEISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLK 557 (664)
Q Consensus 478 ~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~ 557 (664)
....+|..+ +++|+.|++++|.+. .+|..+.+|+.|++++|.++.+|. +.. +|++|++++|. +..+|. .++
T Consensus 70 ~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~-l~~lp~---~l~ 140 (571)
T 3cvr_A 70 NLSSLPDNL-PPQITVLEITQNALI-SLPELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ-LTMLPE---LPA 140 (571)
T ss_dssp CCSCCCSCC-CTTCSEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC-CSCCCC---CCT
T ss_pred CCCccCHhH-cCCCCEEECcCCCCc-ccccccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc-CCCCCC---cCc
Confidence 344577755 488999999999755 788666699999999999999998 665 99999999865 555886 789
Q ss_pred CCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCC
Q 006018 558 SLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSL 637 (664)
Q Consensus 558 ~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L 637 (664)
+|+.|+|++|.+. .+|. .+++|++|+|++|.++.+|. +. ++|+.|+|++|++. .+|.++. . ....++.|
T Consensus 141 ~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~~~~--~-L~~~~~~L 209 (571)
T 3cvr_A 141 LLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPAVPV--R-NHHSEETE 209 (571)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCCCC-----------CC
T ss_pred cccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhhHHH--h-hhcccccc
Confidence 9999999999854 4776 67899999999999999998 65 89999999998655 7776321 1 11233445
Q ss_pred ccccCCCccccc
Q 006018 638 KTLSNSSTLLTR 649 (664)
Q Consensus 638 ~~L~ls~N~l~~ 649 (664)
+.|++++|.|+.
T Consensus 210 ~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 210 IFFRCRENRITH 221 (571)
T ss_dssp EEEECCSSCCCC
T ss_pred eEEecCCCccee
Confidence 999999999985
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=2.2e-14 Score=158.46 Aligned_cols=110 Identities=24% Similarity=0.277 Sum_probs=97.9
Q ss_pred CCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecC
Q 006018 534 RLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQN 613 (664)
Q Consensus 534 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~ 613 (664)
.|+.|+|++| .+..+|. ++.+++|+.|+|++|.+ ..+|..++++++|++|+|++|.++.+| .+.++++|+.|+|++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCC-CCCCCcC-ccccccCcEeecCcccc-cccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 5999999986 5566886 99999999999999985 489999999999999999999999999 899999999999999
Q ss_pred CCCCCcC-CCCCCCCEEeeeCCCCCccccCCCcccccCCCCC
Q 006018 614 CKRLQSL-PELPCGSSIHARHCTSLKTLSNSSTLLTRSSKHW 654 (664)
Q Consensus 614 ~~~l~~l-p~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~~~ 654 (664)
|.+.+.. |. .+.++++|+.|++++|+|++..|..
T Consensus 518 N~l~~~~~p~-------~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 518 NRLQQSAAIQ-------PLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SCCCSSSTTG-------GGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCCCCcH-------HHhcCCCCCEEEecCCcCCCCccHH
Confidence 8876655 76 6889999999999999999876543
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=4.2e-13 Score=121.23 Aligned_cols=125 Identities=21% Similarity=0.256 Sum_probs=107.5
Q ss_pred cCcccEEEcCCCCCC-cccccccc---cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEe
Q 006018 488 LDSLKELYLGGCSNL-KRFPEISC---NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLN 563 (664)
Q Consensus 488 l~~L~~L~l~~~~~~-~~~p~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 563 (664)
.++|+.|++++|... +.+|..+. +|+.|++++|.++.+ ..++.+++|++|++++|.....+|..+..+++|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 468999999999866 47776544 899999999999988 7789999999999999876666887778899999999
Q ss_pred eeCCCCCCc-cccccCCCCCCCEEEccCCCCccccc----cccCCCCCCEEeecC
Q 006018 564 LSGCLKLEK-LPEEIGNLESLEYLNLAEKDFEKIPS----SMKQLSKLSDLRLQN 613 (664)
Q Consensus 564 L~~~~~~~~-~p~~l~~l~~L~~L~l~~n~i~~lp~----~i~~L~~L~~L~L~~ 613 (664)
+++|.+.+. .|..+..+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999985542 34789999999999999999998886 689999999999874
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.38 E-value=1.9e-12 Score=144.13 Aligned_cols=151 Identities=23% Similarity=0.236 Sum_probs=89.3
Q ss_pred ccCCCccCcCcccEEEcCCCCCCcccccccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccC-----
Q 006018 480 TSLPTGINLDSLKELYLGGCSNLKRFPEISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLC----- 554 (664)
Q Consensus 480 ~~lp~~~~l~~L~~L~l~~~~~~~~~p~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~----- 554 (664)
..+|.. +++|+.|++++|.. ..+|....+|+.|++++|.++.+| ..+++|+.|++++|. +..+|..+.
T Consensus 134 ~~lp~~--l~~L~~L~Ls~N~l-~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L 206 (622)
T 3g06_A 134 TSLPVL--PPGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQ-LASLPTLPSELYKL 206 (622)
T ss_dssp SCCCCC--CTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEE
T ss_pred CcCCCC--CCCCCEEECcCCcC-CCcCCccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCC-CCCCCCccchhhEE
Confidence 344443 36677777777643 345555556666666666666655 334667777777654 333442211
Q ss_pred ------------CCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCC
Q 006018 555 ------------NLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 555 ------------~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~ 622 (664)
.+++|+.|+|++|.+ ..+| ..+++|++|++++|.++.+|. .+++|+.|+|++|++. .+|.
T Consensus 207 ~L~~N~l~~l~~~~~~L~~L~Ls~N~L-~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~ 278 (622)
T 3g06_A 207 WAYNNRLTSLPALPSGLKELIVSGNRL-TSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPE 278 (622)
T ss_dssp ECCSSCCSSCCCCCTTCCEEECCSSCC-SCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCG
T ss_pred ECcCCcccccCCCCCCCCEEEccCCcc-CcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCH
Confidence 124566666666553 3344 344566666777666666665 4566777777776544 5555
Q ss_pred CCCCCEEeeeCCCCCccccCCCcccccCCC
Q 006018 623 LPCGSSIHARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 623 l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
.+.++++|+.|++++|++++..|
T Consensus 279 -------~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 279 -------SLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp -------GGGGSCTTCEEECCSCCCCHHHH
T ss_pred -------HHhhccccCEEEecCCCCCCcCH
Confidence 46677888888888888776443
No 122
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.38 E-value=1.8e-12 Score=142.69 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=114.6
Q ss_pred CcccEEEcCCCCCCccc-ccccccccccccccccccc-cccccCCCCCCcEEeecCCCCCC--ccccccCCCCCCCEEee
Q 006018 489 DSLKELYLGGCSNLKRF-PEISCNIEDLDLKETAIEE-LPSSIGNLSRLVDLDLTNCSGLK--SVSSRLCNLKSLRRLNL 564 (664)
Q Consensus 489 ~~L~~L~l~~~~~~~~~-p~~~~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~L 564 (664)
.+|+.|++++|...... +....+|+.|++++|.+.. +|..++.+++|++|++++|.... .+|..+..+++|++|++
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 45777777777643322 1444578888888888875 67778888888888888876554 45567888888888888
Q ss_pred eCCCCCCccccc-cCCCCCCCEEEccCCCCc-cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccC
Q 006018 565 SGCLKLEKLPEE-IGNLESLEYLNLAEKDFE-KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSN 642 (664)
Q Consensus 565 ~~~~~~~~~p~~-l~~l~~L~~L~l~~n~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~l 642 (664)
++|.+.+.+|.. +..+++|++|++++|.++ .+|..+. ++|+.|++++|++. .+|. .+..+++|+.|++
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~-------~~~~l~~L~~L~L 451 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPK-------QVVKLEALQELNV 451 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCG-------GGGGCTTCCEEEC
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccch-------hhhcCCCCCEEEC
Confidence 888866657654 777888888888888885 4555443 68888888887655 6666 4568999999999
Q ss_pred CCcccccCCC
Q 006018 643 SSTLLTRSSK 652 (664)
Q Consensus 643 s~N~l~~~~~ 652 (664)
++|.|+...+
T Consensus 452 ~~N~l~~l~~ 461 (520)
T 2z7x_B 452 ASNQLKSVPD 461 (520)
T ss_dssp CSSCCCCCCT
T ss_pred CCCcCCccCH
Confidence 9999985433
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=4.6e-14 Score=160.84 Aligned_cols=133 Identities=25% Similarity=0.303 Sum_probs=110.9
Q ss_pred CcCcccEEEcCCCCCCcccccccc---cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEe
Q 006018 487 NLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLN 563 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 563 (664)
.+.+|+.|+|++|.+. .+|.... +|+.|+|++|.|+.+|..++.+++|++|+|++|. +..+|..++++++|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEE
Confidence 4889999999999855 6665443 8999999999999999999999999999999876 458899999999999999
Q ss_pred eeCCCCCCccccccCCCCCCCEEEccCCCCcc-ccccccCCC-CCCEEeecCCCCCCcCCC
Q 006018 564 LSGCLKLEKLPEEIGNLESLEYLNLAEKDFEK-IPSSMKQLS-KLSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 564 L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~-lp~~i~~L~-~L~~L~L~~~~~l~~lp~ 622 (664)
|++|. +..+|..|++|++|++|+|++|.+.. +|..+..+. .+..|+|++|.+...+|.
T Consensus 300 L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 300 FFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 99997 56889999999999999999999995 455554432 223478999888777776
No 124
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=6.9e-12 Score=132.28 Aligned_cols=263 Identities=13% Similarity=0.097 Sum_probs=156.2
Q ss_pred CCceeehhhHHHHHhhhcC--CCCcceEEEEecCCCCChHHHHHHHHHHhhcc------C-C-cceeeccchhhh-----
Q 006018 159 DQLVGVESIIKEIESQLLS--GSTEFNTVGIWGIGGIGKTTIASAIYSNISSH------F-E-GSYFMQNIRDES----- 223 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~------f-~-~~~~~~~~~~~~----- 223 (664)
..++||+.+++++..++.. .....+.+.|+|++|+|||+||+.+++..... + . ..+++. .....
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~ 98 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CREVGGTPQA 98 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHHHCSCHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-CccCCCCHHH
Confidence 6799999999999877753 22345689999999999999999999986443 1 2 223332 11111
Q ss_pred ------hcc-------cch-hHHhHHHHHHHhcCceEEEEEecCCCHHH-------HHHHhccCCCCCCCcEEEEEeCCH
Q 006018 224 ------EKV-------GGL-ANIHLNFERRRLSRMKVLIVFYDLTDLKQ-------IDLLIGRLDGFVPGSRVIITTRDV 282 (664)
Q Consensus 224 ------~~~-------~~l-~~~~l~~~~~~L~~~~~LlVlDdv~~~~~-------~~~l~~~~~~~~~gs~IliTtR~~ 282 (664)
... .+. ...-++.+.+.+..++.+|||||++.... +..+... . .+..||+||+..
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~---~-~~~~iI~~t~~~ 174 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS---D-ANISVIMISNDI 174 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS---S-SCEEEEEECSST
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC---C-cceEEEEEECCC
Confidence 000 000 01124556666777666999999976542 2233322 2 677899999865
Q ss_pred HHH----HhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhc---CCch-hHHHHhhhc----
Q 006018 283 QLL----KNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYAN---GVPL-ALQVLGSYL---- 350 (664)
Q Consensus 283 ~~~----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---glPL-al~~~a~~l---- 350 (664)
... ..... .....+.+++++.++..+++..++........-..+..+.+++.++ |.|. |+..+....
T Consensus 175 ~~~~~l~~~l~s-r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 175 NVRDYMEPRVLS-SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTTTSCHHHHH-TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred chHhhhCHHHHh-cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 321 11100 0234899999999999999998753111111112345677888888 8887 433332222
Q ss_pred --CCCCHHHHHHHHHHhhcCCCCcccceeeeecCCCChhhhhhhhhcccccCCCCHH-HHHHHHHHcCCc------cccc
Q 006018 351 --KGMSEEEWESAVNKLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTACFFKGNDQY-LVMNFLDACRFS------AKIG 421 (664)
Q Consensus 351 --~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la~f~~~~~~~-~~~~~~~~~~~~------~~~~ 421 (664)
...+.+.+..++.+... ..+..+++.|++.++..+..++....+.+.. ....+....+.. ....
T Consensus 254 ~~~~i~~~~v~~~~~~~~~-------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 326 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYEQ-------ERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDI 326 (384)
T ss_dssp SSSCCCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHhc-------chHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 23478888888776532 2244466788988888888777611111111 222333332321 1233
Q ss_pred cceecccceeeee
Q 006018 422 ISRLVGKSLVTIS 434 (664)
Q Consensus 422 l~~L~~~~li~~~ 434 (664)
+..|.+.|+++..
T Consensus 327 l~~L~~~gli~~~ 339 (384)
T 2qby_B 327 ISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHTTSEEEE
T ss_pred HHHHHhCCCEEEE
Confidence 6778888888764
No 125
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.38 E-value=3.4e-12 Score=138.35 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=76.5
Q ss_pred cCcccEEEcCCCCCCcccc-cccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeC
Q 006018 488 LDSLKELYLGGCSNLKRFP-EISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSG 566 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p-~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~ 566 (664)
+++|+.|++++|......+ ....+|+.|++++|.+..++. +..+++|+.|++++|.. ..++. +..+++|+.|++++
T Consensus 242 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL-EDISP-ISNLKNLTYLTLYF 318 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-SCCGG-GGGCTTCSEEECCS
T ss_pred CCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcc-cCchh-hcCCCCCCEEECcC
Confidence 4555555555554332222 001145555555555555544 45555555555555432 22332 45555566666655
Q ss_pred CCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcc
Q 006018 567 CLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTL 646 (664)
Q Consensus 567 ~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~ 646 (664)
|.+.+..| +..+++|+.|++++|.++.++ .+.++++|+.|++++|++.+..| +..+++|+.|++++|.
T Consensus 319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~---------~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 319 NNISDISP--VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP---------LANLTRITQLGLNDQA 386 (466)
T ss_dssp SCCSCCGG--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG---------GTTCTTCCEEECCCEE
T ss_pred CcCCCchh--hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch---------hhcCCCCCEEeccCCc
Confidence 55433332 455556666666666555553 45556666666666655433332 2456677777777777
Q ss_pred ccc
Q 006018 647 LTR 649 (664)
Q Consensus 647 l~~ 649 (664)
+++
T Consensus 387 ~~~ 389 (466)
T 1o6v_A 387 WTN 389 (466)
T ss_dssp EEC
T ss_pred ccC
Confidence 765
No 126
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.37 E-value=1.3e-12 Score=145.33 Aligned_cols=154 Identities=20% Similarity=0.151 Sum_probs=105.6
Q ss_pred cCcCcccEEEcCCCCCCccccccc-ccccccccccccccccc-cccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEe
Q 006018 486 INLDSLKELYLGGCSNLKRFPEIS-CNIEDLDLKETAIEELP-SSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLN 563 (664)
Q Consensus 486 ~~l~~L~~L~l~~~~~~~~~p~~~-~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~ 563 (664)
..+...+.+++++|... .+|... .+++.|++++|.+..++ ..+..+++|++|++++|......|..+.++++|++|+
T Consensus 28 ~~~~~~~~l~ls~~~L~-~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 28 FSNELESMVDYSNRNLT-HVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp -----CCEEECTTSCCC-SCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cccCCCcEEEcCCCCCc-cCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 33445577888877643 466533 47888888888888776 3677888888888887665555566778888888888
Q ss_pred eeCCCCCCccccccCCCCCCCEEEccCCCCcccc--ccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCC--cc
Q 006018 564 LSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIP--SSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSL--KT 639 (664)
Q Consensus 564 L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L--~~ 639 (664)
|++|. +..+|.. .+++|++|++++|.++.+| ..+.++++|++|++++|++... .+..+++| +.
T Consensus 107 Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----------~~~~l~~L~L~~ 173 (562)
T 3a79_B 107 VSHNR-LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----------DLLPVAHLHLSC 173 (562)
T ss_dssp CTTSC-CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----------TTGGGTTSCEEE
T ss_pred CCCCc-CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC----------chhhhhhceeeE
Confidence 88877 4467766 7788888888888887654 6778888888888888765431 23344555 77
Q ss_pred ccCCCccc--ccCCCC
Q 006018 640 LSNSSTLL--TRSSKH 653 (664)
Q Consensus 640 L~ls~N~l--~~~~~~ 653 (664)
|++++|.+ ++..|.
T Consensus 174 L~L~~n~l~~~~~~~~ 189 (562)
T 3a79_B 174 ILLDLVSYHIKGGETE 189 (562)
T ss_dssp EEEEESSCCCCSSSCC
T ss_pred EEeecccccccccCcc
Confidence 77777777 555444
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.37 E-value=7.8e-12 Score=134.70 Aligned_cols=162 Identities=22% Similarity=0.273 Sum_probs=92.9
Q ss_pred CcccEEEcCCCCCCcccccccc--cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeC
Q 006018 489 DSLKELYLGGCSNLKRFPEISC--NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSG 566 (664)
Q Consensus 489 ~~L~~L~l~~~~~~~~~p~~~~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~ 566 (664)
++|+.|++++|... .+|.... +|+.|++++|.++.+|..+ .+|++|++++|. +..+| .+.++++|+.|++++
T Consensus 131 ~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCC-CCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCC
Confidence 45666666665433 2443211 5566666666666555432 356666666543 33355 466677777777777
Q ss_pred CCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCC-CEEeeeCC---------CC
Q 006018 567 CLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCG-SSIHARHC---------TS 636 (664)
Q Consensus 567 ~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~-~~l~~~~~---------~~ 636 (664)
|.+. .+|... .+|++|++++|.++.+| .+..+++|+.|++++|++. .+|..+.. +.+.++++ ++
T Consensus 205 N~l~-~l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~l~~N~l~~l~~~~~~ 278 (454)
T 1jl5_A 205 NSLK-KLPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQS 278 (454)
T ss_dssp SCCS-SCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-SCCSCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred CcCC-cCCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCC-cccccccccCEEECCCCcccccCcccCc
Confidence 6633 344322 46777777777777777 4778888888888886654 35554332 44444332 45
Q ss_pred CccccCCCccccc--CC-CCCceEEccCC
Q 006018 637 LKTLSNSSTLLTR--SS-KHWDIFNFSNC 662 (664)
Q Consensus 637 L~~L~ls~N~l~~--~~-~~~~~~~~~~c 662 (664)
|+.|++++|.+++ .. +....+++.+|
T Consensus 279 L~~L~ls~N~l~~l~~~~~~L~~L~l~~N 307 (454)
T 1jl5_A 279 LTFLDVSENIFSGLSELPPNLYYLNASSN 307 (454)
T ss_dssp CCEEECCSSCCSEESCCCTTCCEEECCSS
T ss_pred CCEEECcCCccCcccCcCCcCCEEECcCC
Confidence 6666666666666 22 23344444443
No 128
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.36 E-value=8.2e-12 Score=135.34 Aligned_cols=127 Identities=27% Similarity=0.389 Sum_probs=65.3
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccC
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAE 590 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 590 (664)
+|+.|++++|.+..+++ +..+++|+.|++++|.. ..++. +..+++|+.|++++|.+.+ ++. +..+++|+.|++++
T Consensus 244 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQLED-ISP-ISNLKNLTYLTLYF 318 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-CCCGG-GTTCTTCSEEECCSSCCSC-CGG-GGGCTTCSEEECCS
T ss_pred CCCEEECCCCccccchh-hhcCCCCCEEECCCCcc-Ccccc-ccCCCccCeEEcCCCcccC-chh-hcCCCCCCEEECcC
Confidence 44444444444444433 44445555555554322 22222 4445555555555554322 222 44555555555555
Q ss_pred CCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCC
Q 006018 591 KDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 591 n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
|.+..+++ +..+++|+.|++++|++.. ++ .+..|++|+.|++++|.+++..|
T Consensus 319 n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~--------~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 319 NNISDISP-VSSLTKLQRLFFYNNKVSD-VS--------SLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SCCSCCGG-GGGCTTCCEEECCSSCCCC-CG--------GGTTCTTCCEEECCSSCCCBCGG
T ss_pred CcCCCchh-hccCccCCEeECCCCccCC-ch--------hhccCCCCCEEeCCCCccCccch
Confidence 55554443 4455555555555554322 12 25567888888888888887654
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=1e-12 Score=122.35 Aligned_cols=126 Identities=20% Similarity=0.241 Sum_probs=64.7
Q ss_pred ccCcCcccEEEcCCCCCCcccccccc---cccccccccccccccccccCCCCCCcEEeecCCCCCCccccc-cCCCCCCC
Q 006018 485 GINLDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSR-LCNLKSLR 560 (664)
Q Consensus 485 ~~~l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~-~~~l~~L~ 560 (664)
..++.+|+.|++++|... .+|.... +|+.|++++|.++.+ +.+..+++|++|++++|. +..+|.. +..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 344666777777776533 3333221 455555555555555 345555555555555543 2333322 24555555
Q ss_pred EEeeeCCCCCCcccc--ccCCCCCCCEEEccCCCCcccccc----ccCCCCCCEEeecCC
Q 006018 561 RLNLSGCLKLEKLPE--EIGNLESLEYLNLAEKDFEKIPSS----MKQLSKLSDLRLQNC 614 (664)
Q Consensus 561 ~L~L~~~~~~~~~p~--~l~~l~~L~~L~l~~n~i~~lp~~----i~~L~~L~~L~L~~~ 614 (664)
+|++++|.+ +.+|. .+..+++|++|++++|.+..+|.. +..+++|+.|++++|
T Consensus 92 ~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 ELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 555555542 34443 445555555555555555555543 455555555555554
No 130
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.35 E-value=7.5e-12 Score=134.96 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=81.9
Q ss_pred CcCcccEEEcCCCCCCcccc-cccccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeee
Q 006018 487 NLDSLKELYLGGCSNLKRFP-EISCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLS 565 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p-~~~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~ 565 (664)
.+++|+.|++++|...+ +| ....+|+.|++++|.++.+| ++.+++|++|++++|. +..+| +..+++|++|+++
T Consensus 62 ~l~~L~~L~Ls~n~l~~-~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITT-LDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCA 135 (457)
T ss_dssp GCTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECT
T ss_pred ccCCCCEEEccCCcCCe-EccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECC
Confidence 35555555555554322 22 11125555555555555553 5555555555555543 23333 5555555555555
Q ss_pred CCCCCCccccccCCCCCCCEEEccCC-CCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCC
Q 006018 566 GCLKLEKLPEEIGNLESLEYLNLAEK-DFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSS 644 (664)
Q Consensus 566 ~~~~~~~~p~~l~~l~~L~~L~l~~n-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~ 644 (664)
+|.+.+ +| ++.+++|++|++++| .+..+ .+..+++|+.|++++|++.. +| +..+++|+.|++++
T Consensus 136 ~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~---------l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 136 RNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD---------VSQNKLLNRLNCDT 200 (457)
T ss_dssp TSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC---------CTTCTTCCEEECCS
T ss_pred CCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec---------cccCCCCCEEECcC
Confidence 555333 22 555555566665555 33333 24555566666666554332 22 45678888888888
Q ss_pred cccccC----CCCCceEEccCC
Q 006018 645 TLLTRS----SKHWDIFNFSNC 662 (664)
Q Consensus 645 N~l~~~----~~~~~~~~~~~c 662 (664)
|.+++. .+....+++.+|
T Consensus 201 N~l~~~~l~~l~~L~~L~Ls~N 222 (457)
T 3bz5_A 201 NNITKLDLNQNIQLTFLDCSSN 222 (457)
T ss_dssp SCCSCCCCTTCTTCSEEECCSS
T ss_pred CcCCeeccccCCCCCEEECcCC
Confidence 888754 234445555443
No 131
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.35 E-value=1.8e-11 Score=132.00 Aligned_cols=123 Identities=18% Similarity=0.173 Sum_probs=66.7
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccC
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAE 590 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 590 (664)
+|+.|++++|.++.++ ++.+++|++|++++|..+..+ .+..+++|+.|++++|.+. .+| +..+++|+.|++++
T Consensus 128 ~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~--l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 128 LLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDT 200 (457)
T ss_dssp TCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC--CTTCTTCCEEECCS
T ss_pred cCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-eec--cccCCCCCEEECcC
Confidence 4444444444444442 444445555555544444433 2445555555555555422 233 45555555555555
Q ss_pred CCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCC
Q 006018 591 KDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 591 n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
|.++.++ +..+++|+.|++++|++.+ +| +..+++|+.|++++|.+++..+
T Consensus 201 N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip---------~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 201 NNITKLD--LNQNIQLTFLDCSSNKLTE-ID---------VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp SCCSCCC--CTTCTTCSEEECCSSCCSC-CC---------CTTCTTCSEEECCSSCCSCCCC
T ss_pred CcCCeec--cccCCCCCEEECcCCcccc-cC---------ccccCCCCEEEeeCCcCCCcCH
Confidence 5555542 5555666666666654433 32 3467888888888888886543
No 132
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=2.1e-13 Score=141.19 Aligned_cols=168 Identities=23% Similarity=0.335 Sum_probs=136.8
Q ss_pred CcccEEEcCCCCCCcccccccc--cccccccccccccc--cccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEee
Q 006018 489 DSLKELYLGGCSNLKRFPEISC--NIEDLDLKETAIEE--LPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNL 564 (664)
Q Consensus 489 ~~L~~L~l~~~~~~~~~p~~~~--~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 564 (664)
++++.|++++|...+..+.... +|+.|++++|.+.. +|..+..+++|++|++++|......+..+..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 6789999999876665555433 89999999999873 7888899999999999998766677778899999999999
Q ss_pred eCCCCCC--ccccccCCCCCCCEEEccCC-CCcc--ccccccCCC-CCCEEeecCCC--CC-CcCCCCCCCCEEeeeCCC
Q 006018 565 SGCLKLE--KLPEEIGNLESLEYLNLAEK-DFEK--IPSSMKQLS-KLSDLRLQNCK--RL-QSLPELPCGSSIHARHCT 635 (664)
Q Consensus 565 ~~~~~~~--~~p~~l~~l~~L~~L~l~~n-~i~~--lp~~i~~L~-~L~~L~L~~~~--~l-~~lp~l~~~~~l~~~~~~ 635 (664)
++|..+. .+|..+.++++|++|++++| .++. +|..+..++ +|++|++++|. .. ..+|. .+..|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-------~~~~~~ 222 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-------LVRRCP 222 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-------HHHHCT
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-------HHhhCC
Confidence 9994344 37777889999999999999 8884 677889999 99999999994 33 44555 467899
Q ss_pred CCccccCCCcc-ccc-------CCCCCceEEccCCC
Q 006018 636 SLKTLSNSSTL-LTR-------SSKHWDIFNFSNCS 663 (664)
Q Consensus 636 ~L~~L~ls~N~-l~~-------~~~~~~~~~~~~c~ 663 (664)
+|+.|++++|. +++ ..|....+++.+|.
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 99999999998 653 34666777777763
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=9.8e-13 Score=122.47 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=106.5
Q ss_pred cccccccccccccccccccCCCC-CCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccc-cCCCCCCCEEEc
Q 006018 511 NIEDLDLKETAIEELPSSIGNLS-RLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEE-IGNLESLEYLNL 588 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~L~l 588 (664)
+|+.|++++|.++.+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|.+. .+|.. +..+++|++|++
T Consensus 20 ~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEEC
Confidence 78999999999998865 44444 99999999875 4555 58899999999999999854 55654 489999999999
Q ss_pred cCCCCccccc--cccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccc
Q 006018 589 AEKDFEKIPS--SMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 589 ~~n~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~ 648 (664)
++|.+..+|. .+..+++|+.|++++|++. .+|.. ....+..+++|+.|+++.|.+.
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~---~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHY---RLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTH---HHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhH---HHHHHHHCCccceeCCCcCCHH
Confidence 9999999987 8899999999999998764 55540 0002678999999999999865
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=1.5e-13 Score=145.34 Aligned_cols=169 Identities=14% Similarity=0.145 Sum_probs=127.8
Q ss_pred CcCcccEEEcCCCCCCc----cccccc---ccccccccccccccc-----cccccCCC---------CCCcEEeecCCCC
Q 006018 487 NLDSLKELYLGGCSNLK----RFPEIS---CNIEDLDLKETAIEE-----LPSSIGNL---------SRLVDLDLTNCSG 545 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~----~~p~~~---~~L~~L~l~~~~i~~-----lp~~~~~l---------~~L~~L~l~~~~~ 545 (664)
.+++|+.|++++|.... .+|..+ .+|+.|+|++|.+.. ++..+..+ ++|++|++++|..
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 47899999999998655 345443 389999999998863 33344444 8999999998765
Q ss_pred C-Cccc---cccCCCCCCCEEeeeCCCCCC-----ccccccCCCCCCCEEEccCCCC-----ccccccccCCCCCCEEee
Q 006018 546 L-KSVS---SRLCNLKSLRRLNLSGCLKLE-----KLPEEIGNLESLEYLNLAEKDF-----EKIPSSMKQLSKLSDLRL 611 (664)
Q Consensus 546 l-~~lp---~~~~~l~~L~~L~L~~~~~~~-----~~p~~l~~l~~L~~L~l~~n~i-----~~lp~~i~~L~~L~~L~L 611 (664)
. ..+| ..+..+++|++|++++|.+.. ..|..+..+++|++|+|++|.+ ..+|..+..+++|++|+|
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 4 3444 456788999999999998542 3454788899999999999999 568888999999999999
Q ss_pred cCCCCCCc----CCCCCCCCEEee--eCCCCCccccCCCcccccC------------CCCCceEEccCC
Q 006018 612 QNCKRLQS----LPELPCGSSIHA--RHCTSLKTLSNSSTLLTRS------------SKHWDIFNFSNC 662 (664)
Q Consensus 612 ~~~~~l~~----lp~l~~~~~l~~--~~~~~L~~L~ls~N~l~~~------------~~~~~~~~~~~c 662 (664)
++|.+... +|. .+ ..+++|+.|++++|.+++. .|....+++.+|
T Consensus 252 ~~n~i~~~~~~~l~~-------~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 252 NDCLLSARGAAAVVD-------AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp TTCCCCHHHHHHHHH-------HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred CCCCCchhhHHHHHH-------HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 99986554 344 33 3489999999999999872 355556666554
No 135
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=1.3e-12 Score=130.05 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=120.4
Q ss_pred CcCcccEEEcCCCCCCcccccc--cccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEee
Q 006018 487 NLDSLKELYLGGCSNLKRFPEI--SCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNL 564 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~~--~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L 564 (664)
.+.++..+++++|.. ..++.. +.+|+.|++++|.++.+| .+..+++|+.|++++|. +..+|. +..+++|+.|++
T Consensus 17 ~l~~l~~l~l~~~~i-~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSV-TDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCT-TSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCc-ccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 466777788888763 444422 238999999999999998 68899999999999864 566665 999999999999
Q ss_pred eCCCCCCccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCC
Q 006018 565 SGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSS 644 (664)
Q Consensus 565 ~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~ 644 (664)
++|.+ ..+|.... .+|++|++++|.++.+| .+..+++|+.|++++|++.. +|. +..+++|+.|++++
T Consensus 93 ~~N~l-~~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~~--------l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 93 NRNRL-KNLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IVM--------LGFLSKLEVLDLHG 159 (263)
T ss_dssp CSSCC-SCCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CGG--------GGGCTTCCEEECTT
T ss_pred CCCcc-CCcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-ChH--------HccCCCCCEEECCC
Confidence 99984 45664333 89999999999999987 69999999999999987643 443 67899999999999
Q ss_pred cccccC
Q 006018 645 TLLTRS 650 (664)
Q Consensus 645 N~l~~~ 650 (664)
|.+++.
T Consensus 160 N~i~~~ 165 (263)
T 1xeu_A 160 NEITNT 165 (263)
T ss_dssp SCCCBC
T ss_pred CcCcch
Confidence 999875
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.33 E-value=7.6e-12 Score=116.49 Aligned_cols=133 Identities=20% Similarity=0.223 Sum_probs=108.1
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccC
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAE 590 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 590 (664)
..+.++++++.++.+|..+ .++|+.|++++|......+..+..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 4577889999999998755 47999999998765544445578999999999999986554455678999999999999
Q ss_pred CCCcccccc-ccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCC
Q 006018 591 KDFEKIPSS-MKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 591 n~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
|.++.+|.. +..+++|++|++++|.+. .+|.. .+..+++|+.|++++|++++..|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~------~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDG------IFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTT------TTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHH------HhcCCcccCEEEecCCCeeccCc
Confidence 999988865 688999999999998765 45442 35678999999999999987665
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.32 E-value=4.1e-12 Score=132.23 Aligned_cols=171 Identities=15% Similarity=0.119 Sum_probs=123.4
Q ss_pred cccCccCCCc-c-CcCcccEEEcCCCCCCccccccc-c---ccc-cccccccccccccc-ccCCCCCCcEEeecCCCCCC
Q 006018 476 LNENTSLPTG-I-NLDSLKELYLGGCSNLKRFPEIS-C---NIE-DLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGLK 547 (664)
Q Consensus 476 ~~~~~~lp~~-~-~l~~L~~L~l~~~~~~~~~p~~~-~---~L~-~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~ 547 (664)
.+..+.+|+. + ++++|+.|+|++|...+.+|... . ++. .+.+.+|.+..+++ .+..+++|++|++++|....
T Consensus 39 ~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 39 LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp SCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred CCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence 3455667664 2 47888888888887766665432 2 222 35566677877754 56788888888888765444
Q ss_pred ccccccCCCCCCCEEeeeCCCCCCcccc-ccCCC-CCCCEEEccCCCCccccccccCCCCCCEEeecCCCCCCcCCCCCC
Q 006018 548 SVSSRLCNLKSLRRLNLSGCLKLEKLPE-EIGNL-ESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCKRLQSLPELPC 625 (664)
Q Consensus 548 ~lp~~~~~l~~L~~L~L~~~~~~~~~p~-~l~~l-~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~ 625 (664)
..+..+....++..|++.++..+..+|. .+..+ ..++.|++++|.|+.+|..+...++|+.|++++|+.++.+|.-
T Consensus 119 ~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~-- 196 (350)
T 4ay9_X 119 LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND-- 196 (350)
T ss_dssp CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT--
T ss_pred CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH--
Confidence 4444555667777888877655666654 34555 3688999999999999988878889999999988888888863
Q ss_pred CCEEeeeCCCCCccccCCCcccccCCC
Q 006018 626 GSSIHARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 626 ~~~l~~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
.+.++++|+.|++++|+|+...+
T Consensus 197 ----~f~~l~~L~~LdLs~N~l~~lp~ 219 (350)
T 4ay9_X 197 ----VFHGASGPVILDISRTRIHSLPS 219 (350)
T ss_dssp ----TTTTEECCSEEECTTSCCCCCCS
T ss_pred ----HhccCcccchhhcCCCCcCccCh
Confidence 46788999999999999985433
No 138
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.29 E-value=5.3e-13 Score=141.03 Aligned_cols=159 Identities=14% Similarity=0.110 Sum_probs=128.1
Q ss_pred CcCcccEEEcCCCCCCcc----ccccc------------cccccccccccccc--ccc---cccCCCCCCcEEeecCCCC
Q 006018 487 NLDSLKELYLGGCSNLKR----FPEIS------------CNIEDLDLKETAIE--ELP---SSIGNLSRLVDLDLTNCSG 545 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~----~p~~~------------~~L~~L~l~~~~i~--~lp---~~~~~l~~L~~L~l~~~~~ 545 (664)
.+++|+.|++++|..... ++..+ .+|+.|++++|.+. .+| ..+..+++|+.|++++|..
T Consensus 120 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 120 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 388999999999986422 23222 58999999999986 444 4677899999999999754
Q ss_pred CC-----ccccccCCCCCCCEEeeeCCCCC----CccccccCCCCCCCEEEccCCCCcc-----cccccc--CCCCCCEE
Q 006018 546 LK-----SVSSRLCNLKSLRRLNLSGCLKL----EKLPEEIGNLESLEYLNLAEKDFEK-----IPSSMK--QLSKLSDL 609 (664)
Q Consensus 546 l~-----~lp~~~~~l~~L~~L~L~~~~~~----~~~p~~l~~l~~L~~L~l~~n~i~~-----lp~~i~--~L~~L~~L 609 (664)
.. ..|..+..+++|+.|+|++|.+. ..+|..+..+++|++|+|++|.++. +|..+. .+++|++|
T Consensus 200 ~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L 279 (386)
T 2ca6_A 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTL 279 (386)
T ss_dssp CHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEE
T ss_pred CHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEE
Confidence 42 24447889999999999999964 6788889999999999999999984 467774 49999999
Q ss_pred eecCCCCCC----cCCCCCCCCEEee-eCCCCCccccCCCcccccCCC
Q 006018 610 RLQNCKRLQ----SLPELPCGSSIHA-RHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 610 ~L~~~~~l~----~lp~l~~~~~l~~-~~~~~L~~L~ls~N~l~~~~~ 652 (664)
+|++|.+.. .+|. .+ .++++|+.|++++|.+++..+
T Consensus 280 ~L~~n~i~~~g~~~l~~-------~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 280 RLQYNEIELDAVRTLKT-------VIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp ECCSSCCBHHHHHHHHH-------HHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ECcCCcCCHHHHHHHHH-------HHHhcCCCceEEEccCCcCCcchh
Confidence 999998766 4776 44 568999999999999997653
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.28 E-value=1.9e-11 Score=119.88 Aligned_cols=189 Identities=14% Similarity=0.077 Sum_probs=120.6
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceee----ccchhhhh--------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM----QNIRDESE-------- 224 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~----~~~~~~~~-------- 224 (664)
....++||+..++.+..++..+. ..+.+.|+|++|+||||||+.+++.....+.....- ........
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 99 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEE
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEE
Confidence 45679999999999999986532 235789999999999999999998865433211100 00000000
Q ss_pred cc--cchhHHhHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCHHHH-HhhcCCccc
Q 006018 225 KV--GGLANIHLNFERRRL-----SRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDVQLL-KNHRGSRVG 294 (664)
Q Consensus 225 ~~--~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~~~~-~~~~~~~~~ 294 (664)
.. .......+..+.+.+ .+++.+||+||++. .+.++.+...+.....+..+|+||+..... ..... ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~--r~ 177 (250)
T 1njg_A 100 IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS--RC 177 (250)
T ss_dssp EETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHT--TS
T ss_pred ecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHH--Hh
Confidence 00 000111223333332 34579999999964 456666666655555678899998765321 11111 23
Q ss_pred cEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhc
Q 006018 295 HVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYL 350 (664)
Q Consensus 295 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l 350 (664)
..+++++++.++..+++...+..... .-..+..+.+++.++|+|..+..+...+
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 58999999999999999887743222 1224567889999999999988765443
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=4.4e-12 Score=140.09 Aligned_cols=124 Identities=20% Similarity=0.214 Sum_probs=104.8
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccC
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAE 590 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 590 (664)
.|+.|+|++|.++.+|. ++.+++|+.|+|++|. +..+|..++.+++|+.|+|++|.+. .+| .++.+++|++|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEECCC
Confidence 57789999999999987 9999999999999865 5589999999999999999999855 478 899999999999999
Q ss_pred CCCccc--cccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccC
Q 006018 591 KDFEKI--PSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSN 642 (664)
Q Consensus 591 n~i~~l--p~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~l 642 (664)
|.++.+ |..+..+++|+.|+|++|++.+..|.... .+..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~----l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER----LAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH----HHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH----HHHHCcccCccCC
Confidence 999988 89999999999999999876554443211 2344788888754
No 141
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=3e-11 Score=127.29 Aligned_cols=234 Identities=16% Similarity=0.117 Sum_probs=139.3
Q ss_pred CCCCceeehhhHHHHHhhhcCC--CCcceEEEEecCCCCChHHHHHHHHHHhhccCC---cceeeccchhh------hhc
Q 006018 157 NKDQLVGVESIIKEIESQLLSG--STEFNTVGIWGIGGIGKTTIASAIYSNISSHFE---GSYFMQNIRDE------SEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~------~~~ 225 (664)
.+..|+||+.+++++.+++... ......+.|+|++|+||||||+.+++.....+. ..+++. .... ...
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~ 96 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQIDTPYRVLAD 96 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHHHCSHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCCCCCHHHHHHH
Confidence 4478999999999999988642 344568999999999999999999998766542 223332 1110 000
Q ss_pred ----cc------ch-hHHhHHHHHHHhc--CceEEEEEecCCCHH------HHHHHhccCCC-CCCCcEEEEEeCCHHHH
Q 006018 226 ----VG------GL-ANIHLNFERRRLS--RMKVLIVFYDLTDLK------QIDLLIGRLDG-FVPGSRVIITTRDVQLL 285 (664)
Q Consensus 226 ----~~------~l-~~~~l~~~~~~L~--~~~~LlVlDdv~~~~------~~~~l~~~~~~-~~~gs~IliTtR~~~~~ 285 (664)
.+ +. .....+.+.+.+. +++.+||||+++... .+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 00 00 1111334444443 348999999986543 23344333211 13355678888865432
Q ss_pred Hhhc----CCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhc---CCchhHHHHhhhc------C-
Q 006018 286 KNHR----GSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYAN---GVPLALQVLGSYL------K- 351 (664)
Q Consensus 286 ~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---glPLal~~~a~~l------~- 351 (664)
.... ..-....+.+++++.++..+++...+........-..+..+.+++.++ |.|..+..+.... .
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 2111 000125899999999999999987652111111223456677888887 9998443322221 1
Q ss_pred --CCCHHHHHHHHHHhhcCCCCcccceeeeecCCCChhhhhhhhhcccc
Q 006018 352 --GMSEEEWESAVNKLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTACF 398 (664)
Q Consensus 352 --~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la~f 398 (664)
..+.+.+..++..... ..+.-.+..++...+.++..++.+
T Consensus 257 ~~~i~~~~v~~a~~~~~~-------~~~~~~~~~l~~~~~~il~ai~~~ 298 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIER-------DRVRDIILTLPFHSKLVLMAVVSI 298 (386)
T ss_dssp CSSCCHHHHHHHHHHHHH-------HHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHhh-------chHHHHHHcCCHHHHHHHHHHHHH
Confidence 2367777776665431 223445677888888888877754
No 142
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.21 E-value=4e-11 Score=115.82 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=113.7
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec-cchhhhhcccchhHHhHH
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ-NIRDESEKVGGLANIHLN 235 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~l~~~~l~ 235 (664)
....++|++..++++.+++.... .+.+.|+|++|+|||++|+.+++..........++. +..... ... ....
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~ 87 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER----GID-VVRH 87 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT----CHH-HHHH
T ss_pred CHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc----ChH-HHHH
Confidence 45679999999999999997542 334899999999999999999988644322222221 111100 000 0011
Q ss_pred HHHHHh------cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHHHH-HhhcCCccccEEEecCCCHHH
Q 006018 236 FERRRL------SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQLL-KNHRGSRVGHVFEVKELSYND 306 (664)
Q Consensus 236 ~~~~~L------~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~~~-~~~~~~~~~~~~~l~~L~~~e 306 (664)
.+.... ..++.+||+||++.. +..+.+...+.....+.++|+||+..... ..... ....+.+++++.++
T Consensus 88 ~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~--r~~~i~~~~~~~~~ 165 (226)
T 2chg_A 88 KIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEA 165 (226)
T ss_dssp HHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHH
T ss_pred HHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH--hCceeecCCCCHHH
Confidence 122222 256889999999753 44555555444445677899998865321 11111 23379999999999
Q ss_pred HHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHH
Q 006018 307 SLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 307 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 346 (664)
..+++...+...... -..+..+.+++.++|.|..+..+
T Consensus 166 ~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 166 MKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp HHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999998876422211 22356778889999999865543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=4.8e-11 Score=110.20 Aligned_cols=103 Identities=20% Similarity=0.226 Sum_probs=58.1
Q ss_pred ccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCC
Q 006018 512 IEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEK 591 (664)
Q Consensus 512 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n 591 (664)
.+.+++++|.++.+|..+. ++|++|+|++|......|..+..+++|++|+|++|.+.+..|..+..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 3445555555555555442 55666666655444434555666666666666666544333333456666666666666
Q ss_pred CCcccccc-ccCCCCCCEEeecCCCC
Q 006018 592 DFEKIPSS-MKQLSKLSDLRLQNCKR 616 (664)
Q Consensus 592 ~i~~lp~~-i~~L~~L~~L~L~~~~~ 616 (664)
.++.+|.. +.++++|+.|+|++|++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 66666543 55666666666666554
No 144
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.20 E-value=5.1e-11 Score=125.65 Aligned_cols=237 Identities=16% Similarity=0.145 Sum_probs=137.4
Q ss_pred CCCCceeehhhHHHHHhhhcCC--CCcceEEEEecCCCCChHHHHHHHHHHhhccC-----Cc-ceeeccchh-------
Q 006018 157 NKDQLVGVESIIKEIESQLLSG--STEFNTVGIWGIGGIGKTTIASAIYSNISSHF-----EG-SYFMQNIRD------- 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-----~~-~~~~~~~~~------- 221 (664)
.+..++||+.+++++..++... ....+.+.|+|++|+|||+||+.+++.....+ .. .+++. ...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~ 95 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN-ARHRETPYRV 95 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE-TTTSCSHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE-CCcCCCHHHH
Confidence 4468999999999999988432 34466899999999999999999998864431 11 22222 111
Q ss_pred ---hhhccc------ch-hHHhHHHHHHHh--cCceEEEEEecCCCHHH----HHHH---hccCCCC--CCCcEEEEEeC
Q 006018 222 ---ESEKVG------GL-ANIHLNFERRRL--SRMKVLIVFYDLTDLKQ----IDLL---IGRLDGF--VPGSRVIITTR 280 (664)
Q Consensus 222 ---~~~~~~------~l-~~~~l~~~~~~L--~~~~~LlVlDdv~~~~~----~~~l---~~~~~~~--~~gs~IliTtR 280 (664)
.....+ +. ...-++.+.+.+ .+++.+||||+++.... .+.+ ....... ..+..+|+||+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~ 175 (387)
T 2v1u_A 96 ASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITN 175 (387)
T ss_dssp HHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECS
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEEC
Confidence 000000 00 111134445555 34588999999986542 2222 2222211 34567788887
Q ss_pred CHHHH----HhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhc---CCchhH-HHHhhhc--
Q 006018 281 DVQLL----KNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYAN---GVPLAL-QVLGSYL-- 350 (664)
Q Consensus 281 ~~~~~----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~---glPLal-~~~a~~l-- 350 (664)
..... ......-....+.+++++.++..+++...+........-..+..+.++++++ |.|..+ .++....
T Consensus 176 ~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 176 SLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp CSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred CCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 65221 0111100124789999999999999988753100111112245677888888 999433 2222211
Q ss_pred ------CCCCHHHHHHHHHHhhcCCCCcccceeeeecCCCChhhhhhhhhcccccCC
Q 006018 351 ------KGMSEEEWESAVNKLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTACFFKG 401 (664)
Q Consensus 351 ------~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la~f~~~ 401 (664)
...+.+.+..++..... ..+.-++..|+...+..+..++....+
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~~-------~~~~~~~~~l~~~~~~~l~a~~~~~~~ 305 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIER-------DRVSEVVRTLPLHAKLVLLSIMMLEDG 305 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHHH-------HHHHHHHHSSCHHHHHHHHHHHHHSSS
T ss_pred HHHcCCCCcCHHHHHHHHHHHhh-------chHHHHHHcCCHHHHHHHHHHHHHhcC
Confidence 11367788777766532 123345678899888888877754433
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=5.3e-11 Score=110.33 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=46.9
Q ss_pred ccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCcccc-ccCCCCCCCEEEccCCC
Q 006018 514 DLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPE-EIGNLESLEYLNLAEKD 592 (664)
Q Consensus 514 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~-~l~~l~~L~~L~l~~n~ 592 (664)
.+++++|.+..+|..+. ++|+.|+|++|......|..+.++++|++|+|++|.+.+ +|. .+.++++|++|+|++|.
T Consensus 16 ~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCc
Confidence 34444444444444332 445555555443333334444555555555555554322 332 23455555555555555
Q ss_pred Ccccccc-ccCCCCCCEEeecCCC
Q 006018 593 FEKIPSS-MKQLSKLSDLRLQNCK 615 (664)
Q Consensus 593 i~~lp~~-i~~L~~L~~L~L~~~~ 615 (664)
|+.+|.. +..+++|+.|+|++|+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 5555443 4455555555555544
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=8.4e-14 Score=132.48 Aligned_cols=133 Identities=20% Similarity=0.196 Sum_probs=102.3
Q ss_pred cccccccccccccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccC
Q 006018 511 NIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAE 590 (664)
Q Consensus 511 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 590 (664)
+|+.|++++|.++.+| .+..+++|++|++++|. +..+|..+..+++|+.|++++|.+. .+| .+..+++|++|++++
T Consensus 49 ~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 49 ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp TCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESE
T ss_pred CCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCC-cCC-ccccCCCCCEEECCC
Confidence 7888899999988888 78888999999999864 4577877777889999999998744 466 678888999999999
Q ss_pred CCCccccc--cccCCCCCCEEeecCCCCCCcCCCCCC---CCEEeeeCCCCCccccCCCccccc
Q 006018 591 KDFEKIPS--SMKQLSKLSDLRLQNCKRLQSLPELPC---GSSIHARHCTSLKTLSNSSTLLTR 649 (664)
Q Consensus 591 n~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~l~~---~~~l~~~~~~~L~~L~ls~N~l~~ 649 (664)
|.++.+|. .+..+++|++|++++|++....|.... .....+..+++|+.|| +|.++.
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99987764 688899999999999877555443100 0001256788899887 677664
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=1.9e-10 Score=106.10 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=91.8
Q ss_pred CCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeec
Q 006018 534 RLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQ 612 (664)
Q Consensus 534 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~ 612 (664)
..+.+++++ +.+..+|..+ .++|++|+|++|.+.+..|..+.++++|++|+|++|.++.+|.. +..+++|+.|+|+
T Consensus 10 ~~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSG-KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCC-CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 357899997 4577788665 48999999999997777788899999999999999999999876 5899999999999
Q ss_pred CCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCC
Q 006018 613 NCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 613 ~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
+|++....+. .+..+++|+.|++++|+++...+
T Consensus 87 ~N~l~~~~~~-------~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRG-------AFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTT-------TTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHH-------HhcCCCCCCEEEeCCCCCCCCch
Confidence 9876554443 47789999999999999986654
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.12 E-value=3.7e-10 Score=119.17 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=154.7
Q ss_pred CCCCceeehhhHHHHHhhhcC----CCCcceEEEEecCCCCChHHHHHHHHHHhhccC-Ccceeeccch-----hhh---
Q 006018 157 NKDQLVGVESIIKEIESQLLS----GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF-EGSYFMQNIR-----DES--- 223 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~-----~~~--- 223 (664)
.++.++||+.+++++..++.. .....+.+.|+|++|+||||||+.+++...... ...+++.... ...
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 346799999999999888864 222234899999999999999999998875542 1223332100 000
Q ss_pred -hccc------chhH-HhHHHHHHHhc--CceEEEEEecCCC--HHHHHHHhccCCCCC----CCcEEEEEeCCHHHHHh
Q 006018 224 -EKVG------GLAN-IHLNFERRRLS--RMKVLIVFYDLTD--LKQIDLLIGRLDGFV----PGSRVIITTRDVQLLKN 287 (664)
Q Consensus 224 -~~~~------~l~~-~~l~~~~~~L~--~~~~LlVlDdv~~--~~~~~~l~~~~~~~~----~gs~IliTtR~~~~~~~ 287 (664)
...+ .... .-.+.+.+.+. +++.+||||+++. .+....+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 0000 0011 11233333332 5688999999975 344555555443322 36678888887644322
Q ss_pred hcCC---c-cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHh---------cCCchhHHHHhhhc----
Q 006018 288 HRGS---R-VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYA---------NGVPLALQVLGSYL---- 350 (664)
Q Consensus 288 ~~~~---~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~glPLal~~~a~~l---- 350 (664)
.... . ....+.+++++.++..+++...+........-..+..+.+++.+ +|.|..+..+....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 2100 0 12369999999999999998875321111122346677888999 78875544332221
Q ss_pred --CC---CCHHHHHHHHHHhhcCCCCcccceeeeecCCCChhhhhhhhhccccc---C--CCCHHHHHHHHH----HcCC
Q 006018 351 --KG---MSEEEWESAVNKLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTACFF---K--GNDQYLVMNFLD----ACRF 416 (664)
Q Consensus 351 --~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la~f~---~--~~~~~~~~~~~~----~~~~ 416 (664)
.+ .+.+....++..... ..+.-.+..|+.+.+.++..++.+. . ......+...+. ..+.
T Consensus 255 ~~~~~~~i~~~~v~~~~~~~~~-------~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 327 (389)
T 1fnn_A 255 QQNGRKHIAPEDVRKSSKEVLF-------GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE 327 (389)
T ss_dssp HHTTCSSCCHHHHHHHHHHHSC-------CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC
T ss_pred HHhCCCCcCHHHHHHHHHHHhh-------hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC
Confidence 12 355555555554321 2223345678888888888777654 2 223333322221 2221
Q ss_pred c------cccccceecccceeeee
Q 006018 417 S------AKIGISRLVGKSLVTIS 434 (664)
Q Consensus 417 ~------~~~~l~~L~~~~li~~~ 434 (664)
. ....+..|...++|...
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 328 RPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEe
Confidence 1 12346778888888874
No 149
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.12 E-value=8.2e-12 Score=130.61 Aligned_cols=156 Identities=19% Similarity=0.134 Sum_probs=89.8
Q ss_pred cC-cccEEEcCCCCCCcccccc--------cccccccccccccccccccc-----cCCC-CCCcEEeecCCCCCCccccc
Q 006018 488 LD-SLKELYLGGCSNLKRFPEI--------SCNIEDLDLKETAIEELPSS-----IGNL-SRLVDLDLTNCSGLKSVSSR 552 (664)
Q Consensus 488 l~-~L~~L~l~~~~~~~~~p~~--------~~~L~~L~l~~~~i~~lp~~-----~~~l-~~L~~L~l~~~~~l~~lp~~ 552 (664)
++ +|+.|++++|......+.. ..+|+.|++++|.++..+.. +..+ ++|++|++++|......+..
T Consensus 49 ~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 128 (362)
T 3goz_A 49 TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE 128 (362)
T ss_dssp CCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH
Confidence 44 6777777777543332211 13577777777777644322 3344 67777777776543322222
Q ss_pred ----cCC-CCCCCEEeeeCCCCCC----ccccccCCCC-CCCEEEccCCCCccccc-----cccCC-CCCCEEeecCCCC
Q 006018 553 ----LCN-LKSLRRLNLSGCLKLE----KLPEEIGNLE-SLEYLNLAEKDFEKIPS-----SMKQL-SKLSDLRLQNCKR 616 (664)
Q Consensus 553 ----~~~-l~~L~~L~L~~~~~~~----~~p~~l~~l~-~L~~L~l~~n~i~~lp~-----~i~~L-~~L~~L~L~~~~~ 616 (664)
+.. .++|++|+|++|.+.. .++..+..+. +|++|+|++|.++..+. .+..+ ++|+.|+|++|.+
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 223 2577777777776443 3334444454 77777777777764432 33444 4777777777664
Q ss_pred CCc----CCCCCCCCEEeeeC-CCCCccccCCCcccccC
Q 006018 617 LQS----LPELPCGSSIHARH-CTSLKTLSNSSTLLTRS 650 (664)
Q Consensus 617 l~~----lp~l~~~~~l~~~~-~~~L~~L~ls~N~l~~~ 650 (664)
... ++. .+.. +++|+.|++++|.+++.
T Consensus 209 ~~~~~~~l~~-------~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 209 GLKSYAELAY-------IFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp GGSCHHHHHH-------HHHHSCTTCCEEECCSSCCCCC
T ss_pred ChhHHHHHHH-------HHhcCCCCceEEECcCCCCCcH
Confidence 331 222 2323 45888888888888753
No 150
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.11 E-value=2.3e-10 Score=118.98 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=92.9
Q ss_pred ccCccCCCccCcCcccEEEcCCCCCCccccc-ccc---ccccccccccccc-cccc-ccCCCCCCcEEeecCCCCCCcc-
Q 006018 477 NENTSLPTGINLDSLKELYLGGCSNLKRFPE-ISC---NIEDLDLKETAIE-ELPS-SIGNLSRLVDLDLTNCSGLKSV- 549 (664)
Q Consensus 477 ~~~~~lp~~~~l~~L~~L~l~~~~~~~~~p~-~~~---~L~~L~l~~~~i~-~lp~-~~~~l~~L~~L~l~~~~~l~~l- 549 (664)
+..+++|..+ .++++.|+|++|++ +.+|. .+. +|+.|+|++|.+. .+|. .+.++++|..+.+.+++.+..+
T Consensus 19 ~~Lt~iP~~l-~~~l~~L~Ls~N~i-~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~ 96 (350)
T 4ay9_X 19 SKVTEIPSDL-PRNAIELRFVLTKL-RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96 (350)
T ss_dssp TTCCSCCTTC-CTTCSEEEEESCCC-SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred CCCCccCcCc-CCCCCEEEccCCcC-CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence 3455666654 35677777777753 34443 222 6777777777763 3543 4566666665444333444444
Q ss_pred ccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccC-CCCccccc-cccCCC-CCCEEeecCCCCCCcCCCCCCC
Q 006018 550 SSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAE-KDFEKIPS-SMKQLS-KLSDLRLQNCKRLQSLPELPCG 626 (664)
Q Consensus 550 p~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~-n~i~~lp~-~i~~L~-~L~~L~L~~~~~l~~lp~l~~~ 626 (664)
|..+..+++|++|++++|.+....+..+....++..|++.+ +.+..+|. .+..+. .|+.|+|++|.+ +.+|.
T Consensus 97 ~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i~~---- 171 (350)
T 4ay9_X 97 PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIHN---- 171 (350)
T ss_dssp TTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEECT----
T ss_pred chhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cCCCh----
Confidence 45566777777777777764443333445555666676653 56666654 344443 567777777554 34444
Q ss_pred CEEeeeCCCCCccccCCC-ccccc
Q 006018 627 SSIHARHCTSLKTLSNSS-TLLTR 649 (664)
Q Consensus 627 ~~l~~~~~~~L~~L~ls~-N~l~~ 649 (664)
.+....+|+.|++++ |.++.
T Consensus 172 ---~~f~~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 172 ---SAFNGTQLDELNLSDNNNLEE 192 (350)
T ss_dssp ---TSSTTEEEEEEECTTCTTCCC
T ss_pred ---hhccccchhHHhhccCCcccC
Confidence 233445677777764 44543
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=2.6e-10 Score=105.62 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=90.8
Q ss_pred CcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccccc-ccCCCCCCEEeecC
Q 006018 535 LVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQN 613 (664)
Q Consensus 535 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~ 613 (664)
-+.+++++ +.+..+|..+. ++|+.|+|++|.+.+..|..+.++++|++|+|++|.|+.+|.. +.++++|+.|+|++
T Consensus 14 ~~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 36889987 45688887664 8999999999997777788899999999999999999999876 58999999999999
Q ss_pred CCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCC
Q 006018 614 CKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 614 ~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
|++. .+|.. .+..+++|+.|++++|++....+
T Consensus 91 N~l~-~l~~~------~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLK-SIPRG------AFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCC-CCCTT------TTTTCTTCSEEECCSSCBCTTBG
T ss_pred Cccc-eeCHH------HhccccCCCEEEeCCCCcccccc
Confidence 8765 44441 47789999999999999986543
No 152
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.06 E-value=3.4e-11 Score=125.85 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=113.3
Q ss_pred cCcccEEEcCCCCCCcccc----ccc---c-ccccccccccccccc-ccccCCC-----CCCcEEeecCCCCCCccccc-
Q 006018 488 LDSLKELYLGGCSNLKRFP----EIS---C-NIEDLDLKETAIEEL-PSSIGNL-----SRLVDLDLTNCSGLKSVSSR- 552 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p----~~~---~-~L~~L~l~~~~i~~l-p~~~~~l-----~~L~~L~l~~~~~l~~lp~~- 552 (664)
.++|+.|++++|......+ ..+ . +|+.|+|++|.+... +..+..+ ++|++|+|++|......+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4459999999998544333 222 2 799999999999865 3344443 89999999998755444433
Q ss_pred ---cCCC-CCCCEEeeeCCCCCCccccc----cCC-CCCCCEEEccCCCCc-----cccccccCCC-CCCEEeecCCCCC
Q 006018 553 ---LCNL-KSLRRLNLSGCLKLEKLPEE----IGN-LESLEYLNLAEKDFE-----KIPSSMKQLS-KLSDLRLQNCKRL 617 (664)
Q Consensus 553 ---~~~l-~~L~~L~L~~~~~~~~~p~~----l~~-l~~L~~L~l~~n~i~-----~lp~~i~~L~-~L~~L~L~~~~~l 617 (664)
+..+ ++|++|+|++|.+....+.. +.. .++|++|+|++|.++ .++..+..++ +|++|+|++|.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 4444 89999999999965544433 344 369999999999998 5566677776 9999999998765
Q ss_pred CcCCCCCCCCEEeeeCC-CCCccccCCCccccc
Q 006018 618 QSLPELPCGSSIHARHC-TSLKTLSNSSTLLTR 649 (664)
Q Consensus 618 ~~lp~l~~~~~l~~~~~-~~L~~L~ls~N~l~~ 649 (664)
...+.... -.+..+ ++|+.|++++|.|++
T Consensus 181 ~~~~~~l~---~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 181 SKNCAELA---KFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GSCHHHHH---HHHHTSCTTCCEEECTTSCGGG
T ss_pred hhhHHHHH---HHHHhCCCCCCEEECCCCCCCh
Confidence 44332000 023345 599999999999986
No 153
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.02 E-value=3.1e-11 Score=130.57 Aligned_cols=170 Identities=17% Similarity=0.126 Sum_probs=83.2
Q ss_pred cccEEEcCCCCCCc----ccccccc---ccccccccccccccc-----ccc-cCCCCCCcEEeecCCCCCCc----cccc
Q 006018 490 SLKELYLGGCSNLK----RFPEISC---NIEDLDLKETAIEEL-----PSS-IGNLSRLVDLDLTNCSGLKS----VSSR 552 (664)
Q Consensus 490 ~L~~L~l~~~~~~~----~~p~~~~---~L~~L~l~~~~i~~l-----p~~-~~~l~~L~~L~l~~~~~l~~----lp~~ 552 (664)
+|+.|++++|.... .++..+. +|+.|++++|.+... ... ....++|++|++++|..... ++..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 45666666655331 2232222 555666666555421 111 11244566666665543321 2334
Q ss_pred cCCCCCCCEEeeeCCCCCCccccccC-----CCCCCCEEEccCCCCcc-----ccccccCCCCCCEEeecCCCCCCcCCC
Q 006018 553 LCNLKSLRRLNLSGCLKLEKLPEEIG-----NLESLEYLNLAEKDFEK-----IPSSMKQLSKLSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 553 ~~~l~~L~~L~L~~~~~~~~~p~~l~-----~l~~L~~L~l~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~lp~ 622 (664)
+..+++|++|++++|.+....+..+. .+++|++|++++|.++. +|..+..+++|++|++++|.+...-..
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 44556666666666653332222221 24466666666666653 455555666666666666643221000
Q ss_pred -CCCCCEEeeeCCCCCccccCCCcccccC-----------CCCCceEEccCC
Q 006018 623 -LPCGSSIHARHCTSLKTLSNSSTLLTRS-----------SKHWDIFNFSNC 662 (664)
Q Consensus 623 -l~~~~~l~~~~~~~L~~L~ls~N~l~~~-----------~~~~~~~~~~~c 662 (664)
+.. .....+++|+.|++++|.++.. .+....+++.+|
T Consensus 246 ~l~~---~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 246 ELCP---GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHH---HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHH---HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 000 0112366777777777777652 455556665554
No 154
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.01 E-value=1.3e-12 Score=124.18 Aligned_cols=122 Identities=21% Similarity=0.290 Sum_probs=100.7
Q ss_pred cccccccccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccccc
Q 006018 521 AIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPSSM 600 (664)
Q Consensus 521 ~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i 600 (664)
.++.+|..+..+++|++|++++|. +..+| .+..+++|++|++++|. +..+|..+..+++|++|++++|.++.+| .+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 445566688899999999999865 55588 88999999999999998 4578888888899999999999999988 68
Q ss_pred cCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccCCC
Q 006018 601 KQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRSSK 652 (664)
Q Consensus 601 ~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~~~ 652 (664)
..+++|+.|++++|++.. +|... .+..+++|+.|++++|.+++..|
T Consensus 112 ~~l~~L~~L~l~~N~i~~-~~~~~-----~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITN-WGEID-----KLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHSSEEEESEEECCC-HHHHH-----HHTTTTTCSEEEECSCHHHHHHH
T ss_pred ccCCCCCEEECCCCcCCc-hhHHH-----HHhcCCCCCEEEecCCccccccc
Confidence 999999999999987653 22100 36678999999999999976543
No 155
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.01 E-value=2.7e-11 Score=131.05 Aligned_cols=171 Identities=19% Similarity=0.150 Sum_probs=96.2
Q ss_pred cCcccEEEcCCCCCCcc----ccccc---cccccccccccccccc-----cc-ccCCCCCCcEEeecCCCCCCc----cc
Q 006018 488 LDSLKELYLGGCSNLKR----FPEIS---CNIEDLDLKETAIEEL-----PS-SIGNLSRLVDLDLTNCSGLKS----VS 550 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~----~p~~~---~~L~~L~l~~~~i~~l-----p~-~~~~l~~L~~L~l~~~~~l~~----lp 550 (664)
+++|+.|++++|..... ++..+ .+|+.|++++|.+... ++ .+..+++|++|++++|..... ++
T Consensus 198 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 277 (461)
T 1z7x_W 198 PCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277 (461)
T ss_dssp CCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH
T ss_pred CCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHH
Confidence 34667777777654331 23322 2667777777666532 12 223466777777776643322 45
Q ss_pred cccCCCCCCCEEeeeCCCCCCccccccC-----CCCCCCEEEccCCCCcc-----ccccccCCCCCCEEeecCCCCCCcC
Q 006018 551 SRLCNLKSLRRLNLSGCLKLEKLPEEIG-----NLESLEYLNLAEKDFEK-----IPSSMKQLSKLSDLRLQNCKRLQSL 620 (664)
Q Consensus 551 ~~~~~l~~L~~L~L~~~~~~~~~p~~l~-----~l~~L~~L~l~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~~l 620 (664)
..+..+++|++|++++|.+....+..+. ..++|++|++++|.++. +|..+..+++|++|++++|.+...-
T Consensus 278 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp HHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred HHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 5566677777777777764332222221 22577777777777663 4556666777777777777543322
Q ss_pred CC-CCCCCEEeee-CCCCCccccCCCccccc-----------CCCCCceEEccCC
Q 006018 621 PE-LPCGSSIHAR-HCTSLKTLSNSSTLLTR-----------SSKHWDIFNFSNC 662 (664)
Q Consensus 621 p~-l~~~~~l~~~-~~~~L~~L~ls~N~l~~-----------~~~~~~~~~~~~c 662 (664)
+. +.. .+. .+++|+.|++++|.+++ ..|....+++.+|
T Consensus 358 ~~~l~~----~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 358 VRELCQ----GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHH----HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHH----HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 21 000 011 15688888888888874 2455566666554
No 156
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.98 E-value=1.1e-09 Score=112.37 Aligned_cols=181 Identities=14% Similarity=0.167 Sum_probs=111.4
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec-cchhhhhcccchhHH--h
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ-NIRDESEKVGGLANI--H 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~l~~~--~ 233 (664)
....++|++..++.+..++..+. .+.+.|+|++|+|||++|+.+++.+........++. +..+. ...... .
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~i~~~ 92 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD----RGIDVVRNQ 92 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC----CSHHHHHTH
T ss_pred CHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc----cChHHHHHH
Confidence 45679999999999999987543 233899999999999999999998643221111111 11110 011100 0
Q ss_pred HHHHHH---Hh-cCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCHHHH-HhhcCCccccEEEecCCCHHH
Q 006018 234 LNFERR---RL-SRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDVQLL-KNHRGSRVGHVFEVKELSYND 306 (664)
Q Consensus 234 l~~~~~---~L-~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~~~~-~~~~~~~~~~~~~l~~L~~~e 306 (664)
++.+.. .+ .+++.++|+||++. .+..+.+...+....+++++|+||+...-. ..... ....+.+++++.++
T Consensus 93 ~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s--r~~~i~~~~~~~~~ 170 (323)
T 1sxj_B 93 IKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS--QCAILRYSKLSDED 170 (323)
T ss_dssp HHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHH
T ss_pred HHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh--hceEEeecCCCHHH
Confidence 111110 11 34588999999975 344444544444345677888888764321 11111 24589999999999
Q ss_pred HHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchh-HHHHh
Q 006018 307 SLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLA-LQVLG 347 (664)
Q Consensus 307 a~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa-l~~~a 347 (664)
..+++...+...... -..+....+++.++|.|.. +..+.
T Consensus 171 ~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 171 VLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999998876322111 2235677899999999954 44443
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=1.6e-09 Score=112.29 Aligned_cols=100 Identities=21% Similarity=0.193 Sum_probs=51.4
Q ss_pred ccccc-cccccccccCCCCCCcEEeecCCCCCCccc-cccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCC
Q 006018 516 DLKET-AIEELPSSIGNLSRLVDLDLTNCSGLKSVS-SRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDF 593 (664)
Q Consensus 516 ~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i 593 (664)
+++++ .++.+|. +..+++|+.|+|++++.+..+| ..|.++++|+.|+|++|.+.+..|..|.+|++|++|+|++|.|
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4555555 5555555555555422333333 3455555555555555554444444555555555555555555
Q ss_pred ccccccccCCCCCCEEeecCCCC
Q 006018 594 EKIPSSMKQLSKLSDLRLQNCKR 616 (664)
Q Consensus 594 ~~lp~~i~~L~~L~~L~L~~~~~ 616 (664)
+.+|..+.....|+.|+|.+|++
T Consensus 93 ~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 93 ESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp SCCCSTTTCSCCCCEEECCSSCC
T ss_pred ceeCHHHcccCCceEEEeeCCCc
Confidence 55554433222255555555543
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=5.6e-09 Score=107.18 Aligned_cols=182 Identities=18% Similarity=0.183 Sum_probs=113.3
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec-cchhhhhcccchhHHhHH
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ-NIRDESEKVGGLANIHLN 235 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~l~~~~l~ 235 (664)
...+++|++..++.+..++..+ ..+.+.|+|++|+|||++|+.+++.+........++. +..+.. ....+.+ .+.
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ 98 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER-GINVIRE-KVK 98 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH-HHHTTHH-HHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC-chHHHHH-HHH
Confidence 5567999999999999998654 2335899999999999999999998643221111111 111100 0000110 011
Q ss_pred HHHHH--hc-CceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHHHH-HhhcCCccccEEEecCCCHHHHHH
Q 006018 236 FERRR--LS-RMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQLL-KNHRGSRVGHVFEVKELSYNDSLT 309 (664)
Q Consensus 236 ~~~~~--L~-~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~~~-~~~~~~~~~~~~~l~~L~~~ea~~ 309 (664)
..... +. +++.++|+||++.. +..+.+...+.....++++|+||...... ..... ....+.+++++.++..+
T Consensus 99 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~l~~~~~~~ 176 (327)
T 1iqp_A 99 EFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDEDIAK 176 (327)
T ss_dssp HHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH--TEEEEECCCCCHHHHHH
T ss_pred HHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh--hCcEEEecCCCHHHHHH
Confidence 11111 12 56889999999753 45566665554445678899888764321 11110 23478999999999999
Q ss_pred HHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHH
Q 006018 310 LFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 310 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 346 (664)
++...+..... .-..+..+.+++.++|.|..+..+
T Consensus 177 ~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 177 RLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp HHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHH
Confidence 99887643221 223466778899999999865543
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.90 E-value=1.2e-08 Score=104.69 Aligned_cols=260 Identities=16% Similarity=0.127 Sum_probs=149.7
Q ss_pred CCCCceeehhhHHHHHhhhcCC---CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESIIKEIESQLLSG---STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
....++|++..++++...+... ......|.|+|++|+|||++|+.+++.....|. ++. .... . .
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~---~~~-~~~~-~---~----- 76 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR---VTS-GPAI-E---K----- 76 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEE---EEC-TTTC-C---S-----
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEE---EEe-cccc-C---C-----
Confidence 5678999999999988877521 123357889999999999999999987643321 111 1000 0 0
Q ss_pred HHHHHHHhc---CceEEEEEecCCCH--HHHHHHhccCCCC------------------CCCcEEEEEeCCHHHHH-hhc
Q 006018 234 LNFERRRLS---RMKVLIVFYDLTDL--KQIDLLIGRLDGF------------------VPGSRVIITTRDVQLLK-NHR 289 (664)
Q Consensus 234 l~~~~~~L~---~~~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~~gs~IliTtR~~~~~~-~~~ 289 (664)
...+...+. .++.+|+||+++.. ...+.+...+... .++.++|.||....... ...
T Consensus 77 ~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~ 156 (324)
T 1hqc_A 77 PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLL 156 (324)
T ss_dssp HHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTT
T ss_pred hHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHH
Confidence 011222222 35679999999764 2333333222111 12456777766432111 111
Q ss_pred CCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhcC---------CCCHHHHHH
Q 006018 290 GSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYLK---------GMSEEEWES 360 (664)
Q Consensus 290 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l~---------~~~~~~w~~ 360 (664)
......+.++.++.++..+++...+..... .-..+..+.++++++|.|..+..+...+. ..+.+....
T Consensus 157 -~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~ 233 (324)
T 1hqc_A 157 -SRFGIVEHLEYYTPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALE 233 (324)
T ss_dssp -TTCSCEEECCCCCHHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHH
T ss_pred -hcccEEEecCCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 112358999999999999999887643222 22346678899999999988776544331 125566655
Q ss_pred HHHHhhcCCCCcccceeeeecCCCChhhhhhhhhcccccCC--CCHHHHHHHHHHcCCcc---ccccce-ecccceeeee
Q 006018 361 AVNKLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTACFFKG--NDQYLVMNFLDACRFSA---KIGISR-LVGKSLVTIS 434 (664)
Q Consensus 361 ~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la~f~~~--~~~~~~~~~~~~~~~~~---~~~l~~-L~~~~li~~~ 434 (664)
.+..+. ..+..++..++..+..+.....+ .....+...+ |... ...++. +++.+++...
T Consensus 234 ~~~~~~------------~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l---gi~~~tl~~~l~~~~i~~~li~~~ 298 (324)
T 1hqc_A 234 ALAALG------------LDELGLEKRDREILEVLILRFGGGPVGLATLATAL---SEDPGTLEEVHEPYLIRQGLLKRT 298 (324)
T ss_dssp HHHHHT------------CCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT---TSCHHHHHHHTHHHHHHTTSEEEE
T ss_pred HHHHhc------------ccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHHHHHHHHhHHHHHhcchhcC
Confidence 555432 23456777777777766544333 2343333332 2221 111222 6677888776
Q ss_pred CCeEEechHHHHH
Q 006018 435 NNKITMHDLLQEM 447 (664)
Q Consensus 435 ~~~~~mHdlv~~~ 447 (664)
.....+-+...++
T Consensus 299 ~~g~~~~~~~~~~ 311 (324)
T 1hqc_A 299 PRGRVPTELAYRH 311 (324)
T ss_dssp TTEEEECHHHHHH
T ss_pred CccceecHHHHHH
Confidence 5555555555444
No 160
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=7e-09 Score=106.69 Aligned_cols=95 Identities=15% Similarity=0.173 Sum_probs=70.2
Q ss_pred CCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccc-cccCCCCCC-EEeecCCCCCCcCCCCCCCCEEeeeC
Q 006018 556 LKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSKLS-DLRLQNCKRLQSLPELPCGSSIHARH 633 (664)
Q Consensus 556 l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~-~L~L~~~~~l~~lp~l~~~~~l~~~~ 633 (664)
+++|+.|+|++|.+...-+..|.++.+|+.|++..| ++.++. .|.++++|+ .+++.+ .+..++.. .|.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~------aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFG------AFMG 295 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTT------TTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchh------hhhC
Confidence 578888888887744333456788888888888887 777764 578888888 888877 34455443 6889
Q ss_pred CCCCccccCCCcccccCCCCCceEEccCCC
Q 006018 634 CTSLKTLSNSSTLLTRSSKHWDIFNFSNCS 663 (664)
Q Consensus 634 ~~~L~~L~ls~N~l~~~~~~~~~~~~~~c~ 663 (664)
|++|+.|++++|.++...+.. |.+|.
T Consensus 296 c~~L~~l~l~~n~i~~I~~~a----F~~~~ 321 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTLGDEL----FGNGV 321 (329)
T ss_dssp CTTEEEEEECSSCCCEECTTT----TCTTC
T ss_pred CccCCEEEeCCCccCccchhh----hcCCc
Confidence 999999999999988665555 55664
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.85 E-value=1.6e-10 Score=120.83 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=28.3
Q ss_pred CCCCCEEeeeCCCCCC----ccccccCCCCCCCEEEccCCCCcc-----ccccccCCCCCCEEeecCCCC
Q 006018 556 LKSLRRLNLSGCLKLE----KLPEEIGNLESLEYLNLAEKDFEK-----IPSSMKQLSKLSDLRLQNCKR 616 (664)
Q Consensus 556 l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~l~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~ 616 (664)
.++|+.|+|++|.+.. .++..+..+++|++|+|++|.+.. ++..+...++|+.|+|++|.+
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 3445555555554321 123333444555555555555541 233444445555555555543
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.83 E-value=7.3e-09 Score=107.39 Aligned_cols=105 Identities=20% Similarity=0.156 Sum_probs=85.2
Q ss_pred EEeecCCCCCCccccccCCCCCCCEEeeeC-CCCCCccccccCCCCCCCEEEccCCCCccccc-cccCCCCCCEEeecCC
Q 006018 537 DLDLTNCSGLKSVSSRLCNLKSLRRLNLSG-CLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNC 614 (664)
Q Consensus 537 ~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~-~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~ 614 (664)
.+++++++.+..+|. +..+++|+.|+|++ |.+.+..|..|.+|++|+.|+|++|.|+.+|+ .|.+|++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 467887547888998 99999999999997 77555555789999999999999999998865 6799999999999998
Q ss_pred CCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccC
Q 006018 615 KRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRS 650 (664)
Q Consensus 615 ~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~ 650 (664)
++. .+|.. .+..++ |+.|++.+|.++..
T Consensus 91 ~l~-~~~~~------~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 91 ALE-SLSWK------TVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCS-CCCST------TTCSCC-CCEEECCSSCCCCC
T ss_pred ccc-eeCHH------HcccCC-ceEEEeeCCCccCC
Confidence 765 45542 233344 99999999998743
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.77 E-value=3.3e-08 Score=103.49 Aligned_cols=186 Identities=14% Similarity=0.074 Sum_probs=114.0
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCc----ceeeccchhhhhc-------
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEG----SYFMQNIRDESEK------- 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~----~~~~~~~~~~~~~------- 225 (664)
...+++|++..++.+...+..+. ....+.|+|++|+||||+|+.+++........ +............
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIE 92 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEE
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEE
Confidence 45679999999999999886432 23468899999999999999999886432210 0000000000000
Q ss_pred -c--cchhHHhHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCHHH-HHhhcCCccc
Q 006018 226 -V--GGLANIHLNFERRRL-----SRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDVQL-LKNHRGSRVG 294 (664)
Q Consensus 226 -~--~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~~~-~~~~~~~~~~ 294 (664)
. ......++..+.+.+ .+++.++|+||++. ....+.+...+.....+..+|++|.+..- ...... ..
T Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s--r~ 170 (373)
T 1jr3_A 93 IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS--RC 170 (373)
T ss_dssp EETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHT--TS
T ss_pred ecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHh--he
Confidence 0 000001233333333 34578999999964 44566666655544556777877764432 111111 24
Q ss_pred cEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHh
Q 006018 295 HVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLG 347 (664)
Q Consensus 295 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a 347 (664)
..+++.+++.++..+++...+-.... .-..+....+++.++|.|..+..+.
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNEEHI--AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 68999999999999999876532111 1223557789999999998776544
No 164
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.77 E-value=5.8e-08 Score=99.15 Aligned_cols=181 Identities=14% Similarity=0.141 Sum_probs=112.5
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc-cCCcceeeccchhhhhcccchhHHhHH
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS-HFEGSYFMQNIRDESEKVGGLANIHLN 235 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~l~~~~l~ 235 (664)
...+++|++..++.+.+++..+ ..+.+.++|++|+|||++|+.+++.+.. .+...+...+..... ....+.+ .+.
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ 90 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER-GIDVVRH-KIK 90 (319)
T ss_dssp SGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTT-CTTTSSH-HHH
T ss_pred CHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcccc-ChHHHHH-HHH
Confidence 4567999999999999998654 3334899999999999999999988532 211111111111100 0001111 011
Q ss_pred HHHHH--h-cCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCCHHH-HHhhcCCccccEEEecCCCHHHHHH
Q 006018 236 FERRR--L-SRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRDVQL-LKNHRGSRVGHVFEVKELSYNDSLT 309 (664)
Q Consensus 236 ~~~~~--L-~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~~~~-~~~~~~~~~~~~~~l~~L~~~ea~~ 309 (664)
..... + .+++.++|+|+++.. +..+.+...+.....++++|+||....- ...... ....+.+.+++.++..+
T Consensus 91 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s--r~~~i~~~~~~~~~~~~ 168 (319)
T 2chq_A 91 EFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEAMKK 168 (319)
T ss_dssp HHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHT--TCEEEECCCCCHHHHHH
T ss_pred HHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHh--hCeEEEecCCCHHHHHH
Confidence 11111 1 256789999999753 4556677766665667888888875431 111111 23589999999999999
Q ss_pred HHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHH
Q 006018 310 LFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQV 345 (664)
Q Consensus 310 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~ 345 (664)
++...+..... .-..+..+.+++.++|.+..+..
T Consensus 169 ~l~~~~~~~~~--~i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 169 RLLEICEKEGV--KITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp HHHHHHHTTCC--CBCHHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 99877643222 12345677788889998876543
No 165
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.75 E-value=8.5e-08 Score=99.50 Aligned_cols=205 Identities=17% Similarity=0.103 Sum_probs=114.2
Q ss_pred ChhHhHhhhhhccccccccCCCCCCCCCceeehhhHHHHHhhhcC----------CCCcceEEEEecCCCCChHHHHHHH
Q 006018 133 SESVLIEGNVNDISKKLSDLFPSDNKDQLVGVESIIKEIESQLLS----------GSTEFNTVGIWGIGGIGKTTIASAI 202 (664)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~ 202 (664)
.+..+++.+...+..+. |...-.+++|.+..+++|.+.+.. .....+.|.|+|++|+|||+||+.+
T Consensus 62 ~~~~~~~~i~~~i~~~~----~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 62 LEPKMIELIMNEIMDHG----PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp SCHHHHHHHHHHTBCCS----CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred CChHHHHHHHhhcccCC----CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 35555666555554433 222556799999999999887642 1123567899999999999999999
Q ss_pred HHHhhccCCcceeeccchhhhhcccchhHHhHHHHHH-HhcCceEEEEEecCCCH-------------HHHHHHhccCC-
Q 006018 203 YSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERR-RLSRMKVLIVFYDLTDL-------------KQIDLLIGRLD- 267 (664)
Q Consensus 203 ~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~L~~~~~LlVlDdv~~~-------------~~~~~l~~~~~- 267 (664)
++.....| +..+..+......+-....+..+.. ....++.+|+||+++.. .....++..+.
T Consensus 138 a~~~~~~~----~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 213 (357)
T 3d8b_A 138 ASQSGATF----FSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG 213 (357)
T ss_dssp HHHTTCEE----EEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC
T ss_pred HHHcCCeE----EEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc
Confidence 98764332 1111222211111111111222222 22356789999998543 11223332222
Q ss_pred ---CCCCCcEEEEEeCCHHHH-HhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcC-Cchh
Q 006018 268 ---GFVPGSRVIITTRDVQLL-KNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANG-VPLA 342 (664)
Q Consensus 268 ---~~~~gs~IliTtR~~~~~-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g-lPLa 342 (664)
....+..||.||...... ..... .....+.++..+.++..+++...+-..... -..+..+.+++.+.| .+-.
T Consensus 214 ~~~~~~~~v~vI~atn~~~~l~~~l~~-Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 214 ATTSSEDRILVVGATNRPQEIDEAARR-RLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp ----CCCCEEEEEEESCGGGBCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHH
T ss_pred ccccCCCCEEEEEecCChhhCCHHHHh-hCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHH
Confidence 112344566677543211 11111 144578899999999999988776332211 123456778888887 4555
Q ss_pred HHHHhh
Q 006018 343 LQVLGS 348 (664)
Q Consensus 343 l~~~a~ 348 (664)
|..++.
T Consensus 291 l~~l~~ 296 (357)
T 3d8b_A 291 MTQLCR 296 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 166
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.74 E-value=4.1e-08 Score=95.73 Aligned_cols=173 Identities=11% Similarity=0.138 Sum_probs=101.2
Q ss_pred CCCCceeeh---hhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVE---SIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~---~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
...+|+|.+ ..++.+..++... ..+.+.|+|++|+|||+||+.+++..........++. ..+.......
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~~~~----- 97 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASISTA----- 97 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGSCGG-----
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHHHH-----
Confidence 456788743 5566677666532 3568899999999999999999998665433333432 2221111000
Q ss_pred HHHHHHHhcCceEEEEEecCCCHH--H--HHHHhccCCCC-CCCc-EEEEEeCCH---------HHHHhhcCCccccEEE
Q 006018 234 LNFERRRLSRMKVLIVFYDLTDLK--Q--IDLLIGRLDGF-VPGS-RVIITTRDV---------QLLKNHRGSRVGHVFE 298 (664)
Q Consensus 234 l~~~~~~L~~~~~LlVlDdv~~~~--~--~~~l~~~~~~~-~~gs-~IliTtR~~---------~~~~~~~~~~~~~~~~ 298 (664)
..+.+ .++.+||+||++... . .+.+...+... ..+. ++|+||+.. .+...+. ....++
T Consensus 98 ---~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~---~~~~i~ 170 (242)
T 3bos_A 98 ---LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMH---WGLTYQ 170 (242)
T ss_dssp ---GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHH---HSEEEE
T ss_pred ---HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhh---cCceEE
Confidence 00111 346789999986431 1 22232221110 1122 588887632 2222221 236899
Q ss_pred ecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHH
Q 006018 299 VKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 299 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 346 (664)
+++++.++..+++...+..... .-..+..+.+++.++|.+..+..+
T Consensus 171 l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 171 LQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHH
Confidence 9999999999999887632221 122456778888999988776644
No 167
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.71 E-value=6.5e-08 Score=97.18 Aligned_cols=202 Identities=16% Similarity=0.208 Sum_probs=112.3
Q ss_pred CCCCceeehhhHHHHHhhhcCC-----------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLSG-----------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
...+++|++..+++|.+.+... ....+.+.|+|++|+|||+||+.+++.....|-.. +..+....
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v----~~~~~~~~ 90 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRV----VGSELVKK 90 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE----EGGGGCCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE----ehHHHHHh
Confidence 5577999999999998877421 12345689999999999999999998864433211 11111111
Q ss_pred ccchhHHhHH-HHHHHhcCceEEEEEecCCCH----------------HHHHHHhccCC--CCCCCcEEEEEeCCHHHHH
Q 006018 226 VGGLANIHLN-FERRRLSRMKVLIVFYDLTDL----------------KQIDLLIGRLD--GFVPGSRVIITTRDVQLLK 286 (664)
Q Consensus 226 ~~~l~~~~l~-~~~~~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~--~~~~gs~IliTtR~~~~~~ 286 (664)
..+-....+. .+.......+.+|+||+++.. ..+..+...+. ....+..||.||.......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 1111111122 222233446789999999654 12233332222 1234567777887543221
Q ss_pred h--hcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcC-CchhHHHHhhhc------CC---CC
Q 006018 287 N--HRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANG-VPLALQVLGSYL------KG---MS 354 (664)
Q Consensus 287 ~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~g-lPLal~~~a~~l------~~---~~ 354 (664)
. .........+.++.++.++..+++..++.......+ .....+++.+.| .|-.+..+.... ++ .+
T Consensus 171 ~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~ 247 (285)
T 3h4m_A 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVT 247 (285)
T ss_dssp HHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCC
Confidence 1 011124568999999999999999887643222111 113455666665 343444332211 11 35
Q ss_pred HHHHHHHHHHh
Q 006018 355 EEEWESAVNKL 365 (664)
Q Consensus 355 ~~~w~~~l~~l 365 (664)
.+.+..++...
T Consensus 248 ~~d~~~al~~~ 258 (285)
T 3h4m_A 248 MDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 168
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.69 E-value=4e-09 Score=117.79 Aligned_cols=127 Identities=13% Similarity=0.103 Sum_probs=75.2
Q ss_pred cCcccEEEcCCCCCCcc-------ccccccccccccccccccc-----ccccccCCCCCCcEEeecCCCCCCccccccCC
Q 006018 488 LDSLKELYLGGCSNLKR-------FPEISCNIEDLDLKETAIE-----ELPSSIGNLSRLVDLDLTNCSGLKSVSSRLCN 555 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~-------~p~~~~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 555 (664)
+++|+.|++++|..... ++....+|+.|++++|.++ .++..+.++++|+.|++++|. +..+|..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhh
Confidence 56777777777753221 2223346777777776664 334444566777777777654 3345556666
Q ss_pred CCCCCEEeeeCCCCC---CccccccCCCCCCCEEEccCCCCccccccccCCCCCCEEeecCCC
Q 006018 556 LKSLRRLNLSGCLKL---EKLPEEIGNLESLEYLNLAEKDFEKIPSSMKQLSKLSDLRLQNCK 615 (664)
Q Consensus 556 l~~L~~L~L~~~~~~---~~~p~~l~~l~~L~~L~l~~n~i~~lp~~i~~L~~L~~L~L~~~~ 615 (664)
+++|+.|+++++... ...+..+..+++|+.|+++++....+|..+..+++|++|+|++|.
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 677777777643322 223345556666666666665555666666666666677766665
No 169
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.69 E-value=2.9e-07 Score=91.02 Aligned_cols=180 Identities=14% Similarity=0.165 Sum_probs=98.0
Q ss_pred CCCCceeehhhHHHHHhhhcC---C-------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLLS---G-------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
...+++|.+..++++.+++.. . ....+.|.|+|++|+|||++|+.+++.....|- ..+..+.....
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~----~~~~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFL----AMAGAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE----EEETTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE----EechHHHHhhc
Confidence 456789999888888665421 1 123456889999999999999999997644321 11111111111
Q ss_pred cchhHHhHH-HHHHHhcCceEEEEEecCCCHH-----------------HHHHHhccCCC--CCCCcEEEEEeCCHHHHH
Q 006018 227 GGLANIHLN-FERRRLSRMKVLIVFYDLTDLK-----------------QIDLLIGRLDG--FVPGSRVIITTRDVQLLK 286 (664)
Q Consensus 227 ~~l~~~~l~-~~~~~L~~~~~LlVlDdv~~~~-----------------~~~~l~~~~~~--~~~gs~IliTtR~~~~~~ 286 (664)
.+.....+. .+.......+.+|+||+++... .+..+...+.. ...+..||.||.......
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 111112222 2222333457899999998641 12233332222 123456666776544221
Q ss_pred h-hc-CCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch
Q 006018 287 N-HR-GSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL 341 (664)
Q Consensus 287 ~-~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL 341 (664)
. .. .......+.++..+.++..+++..++..... ..........+++.+.|.+-
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL-TQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC-CBTHHHHHHHHHHTCTTCCH
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC-CcchhhHHHHHHHHCCCCCH
Confidence 1 11 0124567889999999999999887632221 11222233566666666643
No 170
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.69 E-value=1.9e-08 Score=94.20 Aligned_cols=149 Identities=15% Similarity=0.091 Sum_probs=84.8
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC------Ccceeeccchhhhhcccch-
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF------EGSYFMQNIRDESEKVGGL- 229 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~l- 229 (664)
....++||+++++++.+.+... ..+.+.|+|++|+|||+||+.+++...... ...++..+...........
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 97 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccc
Confidence 4567999999999999998653 345688999999999999999999864321 1122222222222111100
Q ss_pred -hHHhHHHHHHHh--cCceEEEEEecCCCHH---------H-HHHHhccCCCCCCCcEEEEEeCCHHHHH------hhcC
Q 006018 230 -ANIHLNFERRRL--SRMKVLIVFYDLTDLK---------Q-IDLLIGRLDGFVPGSRVIITTRDVQLLK------NHRG 290 (664)
Q Consensus 230 -~~~~l~~~~~~L--~~~~~LlVlDdv~~~~---------~-~~~l~~~~~~~~~gs~IliTtR~~~~~~------~~~~ 290 (664)
....+..+.+.+ .+++.+|||||++... . .+.+...+. ..+..+|+||....... ....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~l~~ 175 (195)
T 1jbk_A 98 EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALER 175 (195)
T ss_dssp HHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHT
T ss_pred cHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc--cCCeEEEEeCCHHHHHHHHhcCHHHHH
Confidence 111122222222 3467899999997542 0 222222221 22456777776554321 1111
Q ss_pred CccccEEEecCCCHHHHHHHH
Q 006018 291 SRVGHVFEVKELSYNDSLTLF 311 (664)
Q Consensus 291 ~~~~~~~~l~~L~~~ea~~Lf 311 (664)
....+.++.++.++..+++
T Consensus 176 --r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 --RFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --TEEEEECCCCCHHHHHTTC
T ss_pred --HhceeecCCCCHHHHHHHh
Confidence 1235788888888876653
No 171
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.68 E-value=3.9e-07 Score=90.73 Aligned_cols=200 Identities=13% Similarity=0.034 Sum_probs=105.3
Q ss_pred CCceeehhhHHHHHh-------hhcC-CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchh
Q 006018 159 DQLVGVESIIKEIES-------QLLS-GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLA 230 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~-------~L~~-~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~ 230 (664)
..++|.+..++++.. .+.. .....+.+.|+|++|+|||+||+.+++.....|- . +..............
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~--~-i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI--K-ICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE--E-EECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE--E-EeCHHHhcCCchHHH
Confidence 467888877666655 2321 1344678999999999999999999997533221 1 111111000000000
Q ss_pred HHhHH-HHHHHhcCceEEEEEecCCCH------------HHHHHHhccCCC---CCCCcEEEEEeCCHHHHHhhc-CCcc
Q 006018 231 NIHLN-FERRRLSRMKVLIVFYDLTDL------------KQIDLLIGRLDG---FVPGSRVIITTRDVQLLKNHR-GSRV 293 (664)
Q Consensus 231 ~~~l~-~~~~~L~~~~~LlVlDdv~~~------------~~~~~l~~~~~~---~~~gs~IliTtR~~~~~~~~~-~~~~ 293 (664)
...+. .+......+..+|+||+++.. ..++.+...+.. .+....||.||.......... ....
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf 189 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAF 189 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTS
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhccc
Confidence 01122 222233456889999998653 123333333322 233445677888776554311 1123
Q ss_pred ccEEEecCCCH-HHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCC------chhHHHHhhhcCCCCHHHHHHHHHHhh
Q 006018 294 GHVFEVKELSY-NDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGV------PLALQVLGSYLKGMSEEEWESAVNKLK 366 (664)
Q Consensus 294 ~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl------PLal~~~a~~l~~~~~~~w~~~l~~l~ 366 (664)
...+.+++++. ++..+++.... .. ..+....+++.+.|. .-++.++-..........+...+..+.
T Consensus 190 ~~~i~~p~l~~r~~i~~i~~~~~----~~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~ 262 (272)
T 1d2n_A 190 STTIHVPNIATGEQLLEALELLG----NF---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLR 262 (272)
T ss_dssp SEEEECCCEEEHHHHHHHHHHHT----CS---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHH
T ss_pred ceEEcCCCccHHHHHHHHHHhcC----CC---CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence 56789999988 55555554421 11 234567788888773 333333332222233445555555554
Q ss_pred cC
Q 006018 367 RM 368 (664)
Q Consensus 367 ~~ 368 (664)
..
T Consensus 263 ~~ 264 (272)
T 1d2n_A 263 EE 264 (272)
T ss_dssp HT
T ss_pred Hc
Confidence 33
No 172
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.68 E-value=2.4e-07 Score=95.92 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=103.9
Q ss_pred hccccccccCCCCCCCCCceeehhhHHHHHhhhcC----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCc
Q 006018 143 NDISKKLSDLFPSDNKDQLVGVESIIKEIESQLLS----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEG 212 (664)
Q Consensus 143 ~~~~~~l~~~~p~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~ 212 (664)
..+...+....|...-.+++|.+..++.|...+.. .....+-|.|+|++|+|||+||+++++.....|-
T Consensus 35 ~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~- 113 (355)
T 2qp9_X 35 GALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF- 113 (355)
T ss_dssp ------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEE-
T ss_pred HHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE-
Confidence 33333333334444567899999999999877621 1122346889999999999999999998644331
Q ss_pred ceeeccchhhhhcccchhHHhHHHHHH-HhcCceEEEEEecCCCHH-------------HHHHHhccC---CCCCCCcEE
Q 006018 213 SYFMQNIRDESEKVGGLANIHLNFERR-RLSRMKVLIVFYDLTDLK-------------QIDLLIGRL---DGFVPGSRV 275 (664)
Q Consensus 213 ~~~~~~~~~~~~~~~~l~~~~l~~~~~-~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~gs~I 275 (664)
..+..+......+..+..+..+.. ....++.+|+||+++... ....++..+ .....+..|
T Consensus 114 ---~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 114 ---SVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp ---EEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred ---EeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 112222221111111111222222 223568899999997431 122332222 112345566
Q ss_pred EEEeCCHH-----HHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCC-chhHHHHh
Q 006018 276 IITTRDVQ-----LLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGV-PLALQVLG 347 (664)
Q Consensus 276 liTtR~~~-----~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~a 347 (664)
|.||.... +.. . ....+.++..+.++..+++..++....... .......|++.+.|. +-.|..+.
T Consensus 191 I~atn~~~~ld~al~r--R---f~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--R---FERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEESCGGGSCHHHHH--T---CCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EeecCCcccCCHHHHc--c---cCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66776442 222 1 456788999999999999988763322111 134456778888774 44455444
No 173
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.68 E-value=2.9e-07 Score=94.07 Aligned_cols=185 Identities=15% Similarity=0.085 Sum_probs=104.9
Q ss_pred CCCCceeehhhHHHHHhhhc----------CCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLL----------SGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~----------~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
.-.+++|.+..+++|...+. ......+-|.|+|++|+|||+||+++++.....|-. .+..+.....
T Consensus 16 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~----v~~~~l~~~~ 91 (322)
T 3eie_A 16 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFS----VSSSDLVSKW 91 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEE----EEHHHHHTTT
T ss_pred CHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEE----EchHHHhhcc
Confidence 55679999999999988772 122224578999999999999999999986443311 1222222111
Q ss_pred cchhHHhHHHHH-HHhcCceEEEEEecCCCHH-------------HHHHHhccC---CCCCCCcEEEEEeCCHHHHHhhc
Q 006018 227 GGLANIHLNFER-RRLSRMKVLIVFYDLTDLK-------------QIDLLIGRL---DGFVPGSRVIITTRDVQLLKNHR 289 (664)
Q Consensus 227 ~~l~~~~l~~~~-~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~---~~~~~gs~IliTtR~~~~~~~~~ 289 (664)
.+-.+..+..+. .....++.+|+||+++... ....+...+ .....+..||.||.........-
T Consensus 92 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al 171 (322)
T 3eie_A 92 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAI 171 (322)
T ss_dssp GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHH
Confidence 111111222222 2234467899999997431 122332222 22234556666776543211000
Q ss_pred CCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCC-chhHHHHh
Q 006018 290 GSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGV-PLALQVLG 347 (664)
Q Consensus 290 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~a 347 (664)
.......+.++..+.++-.+++..++...... ........+++.+.|. +-.|..+.
T Consensus 172 ~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 172 RRRFERRIYIPLPDLAARTTMFEINVGDTPCV--LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC--CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HcccCeEEEeCCCCHHHHHHHHHHHhccCCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 00145678899999999999999887432211 1223456677777663 44444443
No 174
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=1.6e-08 Score=104.04 Aligned_cols=66 Identities=20% Similarity=0.276 Sum_probs=53.7
Q ss_pred CCCCCEEEccCCCCccccc-cccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCc-cccCCCcccccCCCCC
Q 006018 580 LESLEYLNLAEKDFEKIPS-SMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLK-TLSNSSTLLTRSSKHW 654 (664)
Q Consensus 580 l~~L~~L~l~~n~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~-~L~ls~N~l~~~~~~~ 654 (664)
+++|+.|+|++|.++.+|. .|.++++|+.|+|.+| +..++.. .|.+|++|+ .+++++ .++...+..
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~------aF~~~~~L~~~l~l~~-~l~~I~~~a 292 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQR------VFSNCGRLAGTLELPA-SVTAIEFGA 292 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTT------TTTTCTTCCEEEEECT-TCCEECTTT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHH------HhhCChhccEEEEEcc-cceEEchhh
Confidence 6799999999999999986 5789999999999986 6667664 688999999 999988 565443333
No 175
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.64 E-value=1.6e-07 Score=94.98 Aligned_cols=183 Identities=16% Similarity=0.122 Sum_probs=103.0
Q ss_pred CCCCCCCceeehhhHHHHHhhhcCC----------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhh
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLSG----------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDES 223 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~~----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~ 223 (664)
|.....+++|.+..++.+.+.+... ....+.+.|+|++|+|||++|+.+++.....|-. + +..+..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~---i-~~~~l~ 91 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLN---I-SAASLT 91 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEE---E-ESTTTS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE---e-eHHHHh
Confidence 3335678999999999998876321 1124678999999999999999999876433311 1 111111
Q ss_pred hcccchhHHhHH-HHHHHhcCceEEEEEecCCCH-------------HHHHHHhcc---CCCC--CCCcEEEEEeCCHH-
Q 006018 224 EKVGGLANIHLN-FERRRLSRMKVLIVFYDLTDL-------------KQIDLLIGR---LDGF--VPGSRVIITTRDVQ- 283 (664)
Q Consensus 224 ~~~~~l~~~~l~-~~~~~L~~~~~LlVlDdv~~~-------------~~~~~l~~~---~~~~--~~gs~IliTtR~~~- 283 (664)
....+-...... .+.......+.+|++|+++.. .....++.. .+.. +.+..||.||....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 111111111122 222223456789999998643 111222221 2211 23455666777542
Q ss_pred ----HHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch-hHHHHh
Q 006018 284 ----LLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL-ALQVLG 347 (664)
Q Consensus 284 ----~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~a 347 (664)
+... ....+.++..+.++..+++...+-..... -..+....+++.+.|.+- ++..+.
T Consensus 172 l~~~l~~R-----~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 172 LDEAALRR-----FTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp BCHHHHHH-----CCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCHHHHhh-----CCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 2222 34578888888888888887765322111 123456778888888875 554443
No 176
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.63 E-value=6.1e-09 Score=116.26 Aligned_cols=165 Identities=17% Similarity=0.114 Sum_probs=86.0
Q ss_pred cCcccEEEcCCCCCC----cccccc---cccccccccccccccccccccCCCCCCcEEeecCCC----------------
Q 006018 488 LDSLKELYLGGCSNL----KRFPEI---SCNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCS---------------- 544 (664)
Q Consensus 488 l~~L~~L~l~~~~~~----~~~p~~---~~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~---------------- 544 (664)
+++|+.|++++|... ..++.. ..+|+.|++++|.+..+|..+..+++|+.|+++++.
T Consensus 191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 456666666665543 122221 125666666666665555555555555555554322
Q ss_pred ----------CCCccccccCCCCCCCEEeeeCCCCCCcc-ccccCCCCCCCEEEccCCCCc--cccccccCCCCCCEEee
Q 006018 545 ----------GLKSVSSRLCNLKSLRRLNLSGCLKLEKL-PEEIGNLESLEYLNLAEKDFE--KIPSSMKQLSKLSDLRL 611 (664)
Q Consensus 545 ----------~l~~lp~~~~~l~~L~~L~L~~~~~~~~~-p~~l~~l~~L~~L~l~~n~i~--~lp~~i~~L~~L~~L~L 611 (664)
....+|..+..+++|++|+|++|.+.... +..+..+++|++|+++ +.+. .++..+..+++|++|++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEe
Confidence 22334444455556666666665532221 1234555666666665 2222 22333345566666666
Q ss_pred cC----------CCCCCc--CCCCCCCCEEeeeCCCCCccccCCCcccccC--------CCCCceEEcc
Q 006018 612 QN----------CKRLQS--LPELPCGSSIHARHCTSLKTLSNSSTLLTRS--------SKHWDIFNFS 660 (664)
Q Consensus 612 ~~----------~~~l~~--lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~--------~~~~~~~~~~ 660 (664)
++ |+.... ++. .+.+|++|+.|+++.|.+++. .|....+++.
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~-------l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIA-------LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHH-------HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred ecCccccccccccCccCHHHHHH-------HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 63 333221 111 134588999999988887742 5666666665
No 177
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.62 E-value=2.8e-07 Score=95.00 Aligned_cols=252 Identities=18% Similarity=0.175 Sum_probs=140.3
Q ss_pred CCCCceeehhhHHHHHhhhcCC---CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESIIKEIESQLLSG---STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
...+++|++..++++..++... ......|.|+|++|+|||+||+.+++.....|-. +. ... ... ..+
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~---~~-~~~-~~~-----~~~ 96 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKT---TA-APM-IEK-----SGD 96 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE---EE-GGG-CCS-----HHH
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE---ec-chh-ccc-----hhH
Confidence 5567999999999998888642 2334578999999999999999998886444311 11 000 000 011
Q ss_pred HHHHHHHhcCceEEEEEecCCCH--HHHHHHhccCCCC------------------CCCcEEEEEeCCHHHH-HhhcCCc
Q 006018 234 LNFERRRLSRMKVLIVFYDLTDL--KQIDLLIGRLDGF------------------VPGSRVIITTRDVQLL-KNHRGSR 292 (664)
Q Consensus 234 l~~~~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~------------------~~gs~IliTtR~~~~~-~~~~~~~ 292 (664)
+...... ..+..+|+||+++.. +....+...+... .++..+|.+|...... ..... .
T Consensus 97 ~~~~~~~-~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~-R 174 (338)
T 3pfi_A 97 LAAILTN-LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD-R 174 (338)
T ss_dssp HHHHHHT-CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT-T
T ss_pred HHHHHHh-ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh-h
Confidence 1111111 235678999999743 3333333322111 1234666666543221 11111 1
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhc------CC---CCHHHHHHHHH
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYL------KG---MSEEEWESAVN 363 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l------~~---~~~~~w~~~l~ 363 (664)
....+.++.++.++..+++...+-... ..-..+..+.+++.+.|.|-.+..+...+ .+ .+.+.....+.
T Consensus 175 ~~~~i~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 252 (338)
T 3pfi_A 175 FGMQFRLEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALN 252 (338)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cCEEeeCCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Confidence 346899999999999999987763221 22234667788888999996655433322 11 24555555554
Q ss_pred HhhcCCCCcccceeeeecCCCChhhhhhhhhcccccCC--CCHHHHHHHHHHcCCccccccc-eecccceeeeeC
Q 006018 364 KLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTACFFKG--NDQYLVMNFLDACRFSAKIGIS-RLVGKSLVTISN 435 (664)
Q Consensus 364 ~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la~f~~~--~~~~~~~~~~~~~~~~~~~~l~-~L~~~~li~~~~ 435 (664)
.+. .+...++..++..+..++.. .+ .....+...+..........++ .|++.++|....
T Consensus 253 ~~~------------~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 253 SLG------------VNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp HHT------------CCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEET
T ss_pred HhC------------CcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCC
Confidence 422 23345555556666555544 32 2344443333211111222344 678888888773
No 178
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.61 E-value=5.5e-07 Score=94.64 Aligned_cols=184 Identities=15% Similarity=0.081 Sum_probs=100.3
Q ss_pred CCCCceeehhhHHHHHhhhcC----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLLS----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
...+++|.+..++.|...+.. .....+.|.|+|++|+|||+||+.+++.....| +..+..+.....
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~----~~v~~~~l~~~~ 188 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF----FNISAASLTSKY 188 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE----EEECSCCC----
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE----EEeeHHHhhccc
Confidence 567899999999999887721 011246789999999999999999988754332 111111111110
Q ss_pred cchhHHhHHHHH-HHhcCceEEEEEecCCCH-------------HHHHHHhccC----CCCCCCcEEEEEeCCHHHHH-h
Q 006018 227 GGLANIHLNFER-RRLSRMKVLIVFYDLTDL-------------KQIDLLIGRL----DGFVPGSRVIITTRDVQLLK-N 287 (664)
Q Consensus 227 ~~l~~~~l~~~~-~~L~~~~~LlVlDdv~~~-------------~~~~~l~~~~----~~~~~gs~IliTtR~~~~~~-~ 287 (664)
.+-....+..+. ......+.+|+||+++.. .....+...+ ........||.||....... .
T Consensus 189 ~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~ 268 (389)
T 3vfd_A 189 VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEA 268 (389)
T ss_dssp ---CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHH
Confidence 000111122222 222345689999999643 1112222211 11123345566665432211 1
Q ss_pred hcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch-hHHHHh
Q 006018 288 HRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL-ALQVLG 347 (664)
Q Consensus 288 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~a 347 (664)
... .....+.++..+.++..+++...+-..... -..+....+++.+.|..- +|..+.
T Consensus 269 l~~-R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 269 VLR-RFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp HHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHc-CcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 111 134568899999999999998776332221 223456778888887554 555443
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.61 E-value=2.6e-07 Score=98.53 Aligned_cols=202 Identities=14% Similarity=0.117 Sum_probs=112.9
Q ss_pred CCCce-eehhhH--HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceee-ccchhhhhcc-cchhHH
Q 006018 158 KDQLV-GVESII--KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM-QNIRDESEKV-GGLANI 232 (664)
Q Consensus 158 ~~~~v-Gr~~~~--~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~-~~~~~~~~~~-~~l~~~ 232 (664)
.+.|| |..... ..+......... ...+.|+|++|+||||||+.+++.....++..-++ .+........ ..+...
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~ 182 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG 182 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTT
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcc
Confidence 34566 654433 333444333322 66899999999999999999999876665433222 1111111100 011111
Q ss_pred hHHHHHHHhcCceEEEEEecCCCH----HHHHHHhccCCC-CCCCcEEEEEeCCH---------HHHHhhcCCccccEEE
Q 006018 233 HLNFERRRLSRMKVLIVFYDLTDL----KQIDLLIGRLDG-FVPGSRVIITTRDV---------QLLKNHRGSRVGHVFE 298 (664)
Q Consensus 233 ~l~~~~~~L~~~~~LlVlDdv~~~----~~~~~l~~~~~~-~~~gs~IliTtR~~---------~~~~~~~~~~~~~~~~ 298 (664)
....+.+.+..+..+|+|||++.. ...+.+...+.. ...|..||+||.+. .+...+. ....+.
T Consensus 183 ~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~---~g~~i~ 259 (440)
T 2z4s_A 183 KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ---MGLVAK 259 (440)
T ss_dssp CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH---SSBCCB
T ss_pred cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc---CCeEEE
Confidence 122344444436779999998532 222333332211 13467899998862 3333333 235788
Q ss_pred ecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhc------CC--CCHHHHHHHHHHh
Q 006018 299 VKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYL------KG--MSEEEWESAVNKL 365 (664)
Q Consensus 299 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l------~~--~~~~~w~~~l~~l 365 (664)
+++++.++..+++...+-...... ..+....|++.++|.+-.+.-+...+ .+ .+.+.++.++..+
T Consensus 260 l~~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 260 LEPPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred eCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999988763211111 12446678888888886554332221 22 4667776666553
No 180
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=3.8e-07 Score=94.51 Aligned_cols=182 Identities=13% Similarity=0.119 Sum_probs=108.1
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc--CCcceeeccchhhhhcccchhHHhH
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH--FEGSYFMQNIRDESEKVGGLANIHL 234 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~l~~~~l 234 (664)
....++|++..++.+...+..+. ...+.|+|++|+||||+|+.+++.+... +...+.-.+..+. .....+.+ .+
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~ 110 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE-RGISIVRE-KV 110 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC-CCHHHHTT-HH
T ss_pred CHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccc-cchHHHHH-HH
Confidence 56789999999999999986543 2338999999999999999999885421 2211111111110 00000000 01
Q ss_pred HHHHH-------------HhcCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCHHH-HHhhcCCccccEEE
Q 006018 235 NFERR-------------RLSRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDVQL-LKNHRGSRVGHVFE 298 (664)
Q Consensus 235 ~~~~~-------------~L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~~~-~~~~~~~~~~~~~~ 298 (664)
..... .-...+-++++|+++. ....+.+...+.......++|++|....- ...... ....+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s--R~~~i~ 188 (353)
T 1sxj_D 111 KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS--QCSKFR 188 (353)
T ss_dssp HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH--HSEEEE
T ss_pred HHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc--cCceEE
Confidence 11111 1123456999999864 33345555444433456678877754421 111110 234789
Q ss_pred ecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHH
Q 006018 299 VKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 299 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~ 346 (664)
+.+++.++..+.+...+...... -..+..+.+++.++|.|..+..+
T Consensus 189 ~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 189 FKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999998876432221 22466788999999999865443
No 181
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.58 E-value=6.5e-07 Score=95.54 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=106.0
Q ss_pred CCCCCCCCCceeehhhHHHHHhhhcC----------CCCcceEEEEecCCCCChHHHHHHHHHHh-hccCCcceeeccch
Q 006018 152 LFPSDNKDQLVGVESIIKEIESQLLS----------GSTEFNTVGIWGIGGIGKTTIASAIYSNI-SSHFEGSYFMQNIR 220 (664)
Q Consensus 152 ~~p~~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~~~~ 220 (664)
..|...-.+++|.+..++.|...+.. .....+.|.|+|++|+|||+||+++++.. ...| +..+..
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~----~~v~~~ 202 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF----FSISSS 202 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE----EEECCC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE----EEEeHH
Confidence 34443567899999999998876621 11234678999999999999999999986 2222 111111
Q ss_pred hhhhcccchhHHhHHHHHHH-hcCceEEEEEecCCCH-------------HHHHHHhccCCCC---CCCcEEEEEeCCHH
Q 006018 221 DESEKVGGLANIHLNFERRR-LSRMKVLIVFYDLTDL-------------KQIDLLIGRLDGF---VPGSRVIITTRDVQ 283 (664)
Q Consensus 221 ~~~~~~~~l~~~~l~~~~~~-L~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~~---~~gs~IliTtR~~~ 283 (664)
+......+.....+..+.+. -...+.+|+||+++.. .....++..+... ..+..||.||..+.
T Consensus 203 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~ 282 (444)
T 2zan_A 203 DLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 282 (444)
T ss_dssp ---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGG
T ss_pred HHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcc
Confidence 11111000001112222222 2356789999999854 2234455544332 34556676776543
Q ss_pred HHH-hhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCC-chhHHHHh
Q 006018 284 LLK-NHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGV-PLALQVLG 347 (664)
Q Consensus 284 ~~~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~a 347 (664)
... .... .....+.++..+.++..++|..++..... .........+++.+.|. +-.|..+.
T Consensus 283 ~ld~al~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 283 VLDSAIRR-RFEKRIYIPLPEAHARAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp GSCHHHHT-TCCEEEECCCCCHHHHHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ccCHHHHh-hcceEEEeCCcCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 211 1111 14567889889999999999887632211 11234456777888774 44454443
No 182
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.55 E-value=9.2e-07 Score=90.20 Aligned_cols=185 Identities=14% Similarity=0.126 Sum_probs=102.3
Q ss_pred CCCCceeehhhHHHHHhhhcC----------CCCcceEEEEecCCCCChHHHHHHHHHHh-hccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLS----------GSTEFNTVGIWGIGGIGKTTIASAIYSNI-SSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~~~~~~~~~ 225 (664)
.-.+++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++++.. ...| +..+..+....
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~----~~i~~~~l~~~ 85 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF----FSISSSDLVSK 85 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE----EEEECCSSCCS
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE----EEEEhHHHHhh
Confidence 456788999888888766521 11224678999999999999999999986 2222 11111111111
Q ss_pred ccchhHHhHHHHHH-HhcCceEEEEEecCCCH-------------HHHHHHhccCCC---CCCCcEEEEEeCCHHHHH-h
Q 006018 226 VGGLANIHLNFERR-RLSRMKVLIVFYDLTDL-------------KQIDLLIGRLDG---FVPGSRVIITTRDVQLLK-N 287 (664)
Q Consensus 226 ~~~l~~~~l~~~~~-~L~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~---~~~gs~IliTtR~~~~~~-~ 287 (664)
..+..+..+..+.+ .-..++.+|+||+++.. .....++..+.. ...+..||.||..+.... .
T Consensus 86 ~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~a 165 (322)
T 1xwi_A 86 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSA 165 (322)
T ss_dssp SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHH
Confidence 11111122222222 22356789999999754 112233322221 234445565665432110 0
Q ss_pred hcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCC-chhHHHHhh
Q 006018 288 HRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGV-PLALQVLGS 348 (664)
Q Consensus 288 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~gl-PLal~~~a~ 348 (664)
... .....+.++..+.++..+++..+....... ........+++.+.|. +-.|..+..
T Consensus 166 l~r-Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 166 IRR-RFEKRIYIPLPEPHARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp HHH-TCCEEEECCCCCHHHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred HHh-hcCeEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 000 145678899999999999998876322111 1234466777777776 434554443
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.53 E-value=1e-06 Score=89.39 Aligned_cols=155 Identities=15% Similarity=0.125 Sum_probs=91.1
Q ss_pred CceeehhhHHHHHhhhcC-------------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCC--cceee-ccchhhh
Q 006018 160 QLVGVESIIKEIESQLLS-------------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFE--GSYFM-QNIRDES 223 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~-------------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~-~~~~~~~ 223 (664)
.++|.+..++.|.+.+.. .......+.|+|++|+|||++|+.+++.+..... ...++ .+..+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 479999999888866531 1233457899999999999999999988644221 11111 1122211
Q ss_pred hcccchhHHhHHHHHHHhcCceEEEEEecCC-----------CHHHHHHHhccCCCCCCCcEEEEEeCCHHHHHhh--cC
Q 006018 224 EKVGGLANIHLNFERRRLSRMKVLIVFYDLT-----------DLKQIDLLIGRLDGFVPGSRVIITTRDVQLLKNH--RG 290 (664)
Q Consensus 224 ~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~-----------~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~--~~ 290 (664)
....+-....+..+.+.. +..+|+||+++ ..+....+...+.....+..||+||......... ..
T Consensus 112 ~~~~g~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~ 189 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNP 189 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHST
T ss_pred hhcccccHHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCH
Confidence 111111111111111111 34699999997 4445566655555445567888888643221100 00
Q ss_pred ---CccccEEEecCCCHHHHHHHHHHhhh
Q 006018 291 ---SRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 291 ---~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
......+.+++++.++..+++..++-
T Consensus 190 ~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 190 GFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp THHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 01346899999999999999987763
No 184
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.50 E-value=6.6e-07 Score=92.82 Aligned_cols=184 Identities=12% Similarity=0.092 Sum_probs=104.3
Q ss_pred CCCCceeehhhHHHHHhhh-cCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeecc-----------------
Q 006018 157 NKDQLVGVESIIKEIESQL-LSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQN----------------- 218 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L-~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~----------------- 218 (664)
...+++|.+..++.+..++ ..+. ... +.|+|++|+||||+|+.++..+...-.+.+.+..
T Consensus 12 ~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 12 SLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp SGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 5567999999999999988 4432 233 8999999999999999999864221111111100
Q ss_pred ---chhhhhcccchhH-HhHH-HHHHH--------------hcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEE
Q 006018 219 ---IRDESEKVGGLAN-IHLN-FERRR--------------LSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVII 277 (664)
Q Consensus 219 ---~~~~~~~~~~l~~-~~l~-~~~~~--------------L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~Ili 277 (664)
............. .... .+.+. +.+++-++|||+++.. +..+.+...+....+++.+|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il 169 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIM 169 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEE
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEE
Confidence 0000000000000 0111 11111 1235669999999753 334445444433345678888
Q ss_pred EeCCHH-HHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccH-HHHHHHHHHHhcCCchhHHHH
Q 006018 278 TTRDVQ-LLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGF-LELSNIVIKYANGVPLALQVL 346 (664)
Q Consensus 278 TtR~~~-~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~-~~~~~~i~~~~~glPLal~~~ 346 (664)
+|.+.. +...... ....+++++++.++..+.+...+-..... -. .+.+..+++.++|.+..+..+
T Consensus 170 ~t~~~~~l~~~l~s--R~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 170 VCDSMSPIIAPIKS--QCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EESCSCSSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred EeCCHHHHHHHHHh--hceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 887532 2111111 23679999999999999998776322111 11 255677888888887655433
No 185
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.50 E-value=1e-08 Score=114.41 Aligned_cols=151 Identities=22% Similarity=0.330 Sum_probs=71.8
Q ss_pred cCcccEEEcCCCCCCcc--cccc---cccccccccccccccc-----cccccCCCCCCcEEeecCCC-CC--CccccccC
Q 006018 488 LDSLKELYLGGCSNLKR--FPEI---SCNIEDLDLKETAIEE-----LPSSIGNLSRLVDLDLTNCS-GL--KSVSSRLC 554 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~--~p~~---~~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~-~l--~~lp~~~~ 554 (664)
+++|+.|++++|..... ++.. ..+|+.|++++|.+.. ++.....+++|+.|++++|. .+ ..++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 45556666655532222 2221 2255566666555432 22222345566666665543 01 01111122
Q ss_pred CCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCC-------------------------------CCccccccccCC
Q 006018 555 NLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEK-------------------------------DFEKIPSSMKQL 603 (664)
Q Consensus 555 ~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n-------------------------------~i~~lp~~i~~L 603 (664)
.+++|++|++++|.....+|..+..+++|+.|+++.+ ....+|..+..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 3455666666655333344444455555555553322 222344434456
Q ss_pred CCCCEEeecCCCCCCc-CCCCCCCCEEeeeCCCCCccccCCCc
Q 006018 604 SKLSDLRLQNCKRLQS-LPELPCGSSIHARHCTSLKTLSNSST 645 (664)
Q Consensus 604 ~~L~~L~L~~~~~l~~-lp~l~~~~~l~~~~~~~L~~L~ls~N 645 (664)
++|++|+|++|..... ++. .+..|++|+.|++++|
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~-------~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVK-------LLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHH-------HHTTCTTCCEEEEEGG
T ss_pred CCCCEEEccCCCCCHHHHHH-------HHhcCCCcCEEeCcCc
Confidence 6777777777663221 111 1345677777777776
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.48 E-value=7.8e-07 Score=91.03 Aligned_cols=177 Identities=13% Similarity=0.132 Sum_probs=96.2
Q ss_pred CCCCce-eehh--hHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc-cchhHH
Q 006018 157 NKDQLV-GVES--IIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV-GGLANI 232 (664)
Q Consensus 157 ~~~~~v-Gr~~--~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~-~~l~~~ 232 (664)
..+.|| |... ....+...+.........+.|+|++|+||||||+.+++.....-...+++. ..+..... ..+...
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~ 87 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-ADDFAQAMVEHLKKG 87 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HHHHHHHHHHHHHHT
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HHHHHHHHHHHHHcC
Confidence 345566 5433 233455555443334567999999999999999999998654311222222 22111110 011111
Q ss_pred hHHHHHHHhcCceEEEEEecCCCHH----HHHHHhccCCC-CCCCcEEEEEeCCH---------HHHHhhcCCccccEEE
Q 006018 233 HLNFERRRLSRMKVLIVFYDLTDLK----QIDLLIGRLDG-FVPGSRVIITTRDV---------QLLKNHRGSRVGHVFE 298 (664)
Q Consensus 233 ~l~~~~~~L~~~~~LlVlDdv~~~~----~~~~l~~~~~~-~~~gs~IliTtR~~---------~~~~~~~~~~~~~~~~ 298 (664)
....+.+.+. +..+|++||++... ..+.+...+.. ...+..||+||... .+...+. ....++
T Consensus 88 ~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~---~~~~i~ 163 (324)
T 1l8q_A 88 TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFE---GGILVE 163 (324)
T ss_dssp CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHH---TSEEEE
T ss_pred cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhccc---CceEEE
Confidence 1222333332 36789999986432 12222222211 12456788888632 2333332 235799
Q ss_pred ecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchh
Q 006018 299 VKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLA 342 (664)
Q Consensus 299 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLa 342 (664)
+++ +.++..+++...+...... -..+..+.+++++ |..-.
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHH
Confidence 999 9999999998877422221 1235567777887 76643
No 187
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.48 E-value=3.4e-08 Score=103.00 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=97.4
Q ss_pred cCcccEEEcCCCCCCccc----ccccccccccccccccccccc-----ccc-CCCCCCcEEeecCCCCCC----cccccc
Q 006018 488 LDSLKELYLGGCSNLKRF----PEISCNIEDLDLKETAIEELP-----SSI-GNLSRLVDLDLTNCSGLK----SVSSRL 553 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~----p~~~~~L~~L~l~~~~i~~lp-----~~~-~~l~~L~~L~l~~~~~l~----~lp~~~ 553 (664)
.++|+.|+|++|.....- ...+.+|+.|+|++|.+.... ..+ ...++|+.|+|++|.... .++..+
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 357999999999754321 222337999999999986332 223 357899999999986432 244556
Q ss_pred CCCCCCCEEeeeCCCCCC----ccccccCCCCCCCEEEccCCCCcc-----ccccccCCCCCCEEeecCCCCCC
Q 006018 554 CNLKSLRRLNLSGCLKLE----KLPEEIGNLESLEYLNLAEKDFEK-----IPSSMKQLSKLSDLRLQNCKRLQ 618 (664)
Q Consensus 554 ~~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~l~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l~ 618 (664)
...++|++|+|++|.+.. .++..+...++|++|+|++|.|+. ++..+...++|++|+|++|.+..
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 778999999999998543 235667778899999999999983 45566778999999999997643
No 188
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.46 E-value=1.6e-08 Score=112.93 Aligned_cols=176 Identities=19% Similarity=0.149 Sum_probs=116.7
Q ss_pred CcCcccEEEcCCCCCCccccc----ccccccccccccc-cccc--cccccCCCCCCcEEeecCCCCCCc----cccccCC
Q 006018 487 NLDSLKELYLGGCSNLKRFPE----ISCNIEDLDLKET-AIEE--LPSSIGNLSRLVDLDLTNCSGLKS----VSSRLCN 555 (664)
Q Consensus 487 ~l~~L~~L~l~~~~~~~~~p~----~~~~L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~~~l~~----lp~~~~~ 555 (664)
.+++|+.|++++|......+. .+.+|+.|++++| .+.. ++..+.++++|++|++++|..... ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 377899999999875443322 2348999999987 5553 555556789999999998863222 3333446
Q ss_pred CCCCCEEeeeCCC--CC-CccccccCCCCCCCEEEccCC-CCccccccccCCCCCCEEeecCCC----------------
Q 006018 556 LKSLRRLNLSGCL--KL-EKLPEEIGNLESLEYLNLAEK-DFEKIPSSMKQLSKLSDLRLQNCK---------------- 615 (664)
Q Consensus 556 l~~L~~L~L~~~~--~~-~~~p~~l~~l~~L~~L~l~~n-~i~~lp~~i~~L~~L~~L~L~~~~---------------- 615 (664)
+++|+.|++++|. .. ..++..+..+++|++|++++| .+..+|..+.++++|+.|+++.|.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7899999999886 11 112223355789999999987 566788888899999999876553
Q ss_pred ---CCCcCCCCCCC--CE--EeeeCCCCCccccCCCccccc--------CCCCCceEEccCC
Q 006018 616 ---RLQSLPELPCG--SS--IHARHCTSLKTLSNSSTLLTR--------SSKHWDIFNFSNC 662 (664)
Q Consensus 616 ---~l~~lp~l~~~--~~--l~~~~~~~L~~L~ls~N~l~~--------~~~~~~~~~~~~c 662 (664)
.+..+...... .. -.+..|++|+.|++++|.+++ ..|....+++.+|
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 22221000000 00 012367899999999998763 4566677776655
No 189
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.46 E-value=4.8e-07 Score=96.23 Aligned_cols=176 Identities=17% Similarity=0.228 Sum_probs=103.4
Q ss_pred CCCCceeehhhH---HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESII---KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~---~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
...++||.+..+ ..+...+..+ ....+.|+|++|+||||||+.+++.....|....... .....+.. .
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~------~~~~~ir~-~ 94 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT------SGVKEIRE-A 94 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT------CCHHHHHH-H
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc------CCHHHHHH-H
Confidence 567899999888 6777777543 3467999999999999999999998755442211100 00000000 0
Q ss_pred HHHH-HHHhcCceEEEEEecCCCHH--HHHHHhccCCCCCCCcEEEE-EeCCHHH--HHhhcCCccccEEEecCCCHHHH
Q 006018 234 LNFE-RRRLSRMKVLIVFYDLTDLK--QIDLLIGRLDGFVPGSRVII-TTRDVQL--LKNHRGSRVGHVFEVKELSYNDS 307 (664)
Q Consensus 234 l~~~-~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~gs~Ili-TtR~~~~--~~~~~~~~~~~~~~l~~L~~~ea 307 (664)
+... .....+++.+|+||+++... +.+.++..+.. ....+|. ||.+... ...... ...++.+++++.++.
T Consensus 95 ~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi 170 (447)
T 3pvs_A 95 IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDI 170 (447)
T ss_dssp HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHH
T ss_pred HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHH
Confidence 1111 11224578899999997543 33444444332 1234444 5554421 111111 245789999999999
Q ss_pred HHHHHHhhhCCC-----CCCccHHHHHHHHHHHhcCCchhHHH
Q 006018 308 LTLFSRNAFGQN-----HPAAGFLELSNIVIKYANGVPLALQV 345 (664)
Q Consensus 308 ~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~glPLal~~ 345 (664)
.+++.+.+-... ....-..+..+.++++++|.+..+..
T Consensus 171 ~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 171 EQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 999988764311 11222346677888889998865543
No 190
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=1e-06 Score=96.00 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=100.7
Q ss_pred CCCCceeehhhHHHHHhhhcCCC---------------CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGS---------------TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRD 221 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~---------------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~ 221 (664)
...+++|++..++++..++.... ...+.+.|+|++|+|||++|+.+++.... ... .+. ..+
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~--~~i-~in-~s~ 112 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--DIL-EQN-ASD 112 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC--EEE-EEC-TTS
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC--CEE-EEe-CCC
Confidence 55679999999999999986410 12468999999999999999999998632 111 111 100
Q ss_pred hhhcc---cchhH----HhHHHHHH------HhcCceEEEEEecCCCHH-----HHHHHhccCCCCCCCcEEEEEeCCHH
Q 006018 222 ESEKV---GGLAN----IHLNFERR------RLSRMKVLIVFYDLTDLK-----QIDLLIGRLDGFVPGSRVIITTRDVQ 283 (664)
Q Consensus 222 ~~~~~---~~l~~----~~l~~~~~------~L~~~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IliTtR~~~ 283 (664)
..... ..+.. ..+..+.+ ....++.+||+|+++... .+..+...+.. .+..||+++.+..
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 00000 00000 00000000 013567899999996431 12333322221 2334666555432
Q ss_pred H--HHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCch-hHHHH
Q 006018 284 L--LKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPL-ALQVL 346 (664)
Q Consensus 284 ~--~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPL-al~~~ 346 (664)
. ..... .....+.++.++.++..+.+...+....... ..+....|++.++|.+. ++..+
T Consensus 191 ~~~l~~l~--~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i--~~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 191 LPKMRPFD--RVCLDIQFRRPDANSIKSRLMTIAIREKFKL--DPNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp SSTTGGGT--TTSEEEECCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHTTTCHHHHHHHH
T ss_pred CccchhhH--hceEEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHHHHHH
Confidence 1 11111 1456799999999999999887664322111 12456778888988554 44444
No 191
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.44 E-value=3.7e-06 Score=87.62 Aligned_cols=180 Identities=13% Similarity=0.114 Sum_probs=101.5
Q ss_pred CCCceeehhhHHHH---HhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec------c------chhh
Q 006018 158 KDQLVGVESIIKEI---ESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ------N------IRDE 222 (664)
Q Consensus 158 ~~~~vGr~~~~~~l---~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~------~------~~~~ 222 (664)
...+||++..++.+ ...+..+....+.+.|+|++|+|||++|+.+++......+....-. . +.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQA 122 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHH
Confidence 56899999987764 4445444333468999999999999999999998754322111000 0 0000
Q ss_pred hhc------------------------------------ccchhHH---hHHHHHHH--hcCc----eEEEEEecCCCH-
Q 006018 223 SEK------------------------------------VGGLANI---HLNFERRR--LSRM----KVLIVFYDLTDL- 256 (664)
Q Consensus 223 ~~~------------------------------------~~~l~~~---~l~~~~~~--L~~~----~~LlVlDdv~~~- 256 (664)
+.. .+..... .+...... ..++ +.+|+||+++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~ 202 (368)
T 3uk6_A 123 FRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD 202 (368)
T ss_dssp HHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB
T ss_pred HHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC
Confidence 000 0000000 01111111 1122 359999999753
Q ss_pred -HHHHHHhccCCCCCCCcEEEEEeCC-----------------HHHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCC
Q 006018 257 -KQIDLLIGRLDGFVPGSRVIITTRD-----------------VQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQ 318 (664)
Q Consensus 257 -~~~~~l~~~~~~~~~gs~IliTtR~-----------------~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 318 (664)
+..+.+...+...... .++++|.. +.+..+ ...+.+++++.++..+++...+-..
T Consensus 203 ~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR------~~~i~~~~~~~~e~~~il~~~~~~~ 275 (368)
T 3uk6_A 203 IESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDR------LLIVSTTPYSEKDTKQILRIRCEEE 275 (368)
T ss_dssp HHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTT------EEEEEECCCCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhh------ccEEEecCCCHHHHHHHHHHHHHHc
Confidence 4455555555443333 44444431 233332 2358999999999999998776432
Q ss_pred CCCCccHHHHHHHHHHHhc-CCchhHHHH
Q 006018 319 NHPAAGFLELSNIVIKYAN-GVPLALQVL 346 (664)
Q Consensus 319 ~~~~~~~~~~~~~i~~~~~-glPLal~~~ 346 (664)
.. .-..+..+.+++++. |.|..+..+
T Consensus 276 ~~--~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 276 DV--EMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp TC--CBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC--CCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 22 223456778888887 887665533
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.35 E-value=3.7e-06 Score=85.96 Aligned_cols=172 Identities=13% Similarity=0.078 Sum_probs=100.2
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHH-
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLN- 235 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~- 235 (664)
...+++|.+..++.+..++..+. ...++.+.|++|+|||++|+.+++.....| +.+. ... .. ...+.
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~~~~---~~i~-~~~-----~~--~~~i~~ 91 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVNADM---MFVN-GSD-----CK--IDFVRG 91 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTTEEE---EEEE-TTT-----CC--HHHHHT
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCCCE---EEEc-ccc-----cC--HHHHHH
Confidence 56789999999999999997542 346788899999999999999998864322 1111 100 01 11111
Q ss_pred HHHHHh-----cCceEEEEEecCCCHH---HHHHHhccCCCCCCCcEEEEEeCCHHHH-HhhcCCccccEEEecCCCHHH
Q 006018 236 FERRRL-----SRMKVLIVFYDLTDLK---QIDLLIGRLDGFVPGSRVIITTRDVQLL-KNHRGSRVGHVFEVKELSYND 306 (664)
Q Consensus 236 ~~~~~L-----~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs~IliTtR~~~~~-~~~~~~~~~~~~~l~~L~~~e 306 (664)
.+.+.. .+++.++++|+++... ..+.+...+.....+.++|+||....-. .... .....++++.++.++
T Consensus 92 ~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~--sR~~~i~~~~~~~~e 169 (324)
T 3u61_B 92 PLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ--SRCRVITFGQPTDED 169 (324)
T ss_dssp HHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH--HHSEEEECCCCCHHH
T ss_pred HHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH--hhCcEEEeCCCCHHH
Confidence 112211 2367899999998653 4455554443333567888888754311 0000 023478999999888
Q ss_pred HHHHHHH-------hhhCCCCCCccHHHHHHHHHHHhcCCchhH
Q 006018 307 SLTLFSR-------NAFGQNHPAAGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 307 a~~Lf~~-------~a~~~~~~~~~~~~~~~~i~~~~~glPLal 343 (664)
-.+++.. .+....... ...+..+.+++.++|.+..+
T Consensus 170 ~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 170 KIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHHH
Confidence 5433322 221111111 11255667778887776543
No 193
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.35 E-value=4.2e-06 Score=84.46 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=90.6
Q ss_pred CCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
.-.+++|.+..+++|.+.+.. +-...+.|.|+|++|+|||+||+.+++.....| +.+ +..+....
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v-~~~~l~~~ 88 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISI-KGPELLTM 88 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEE-CHHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEE-EhHHHHhh
Confidence 456789999998888877642 112346789999999999999999999864332 111 11111111
Q ss_pred ccchhHHhHH-HHHHHhcCceEEEEEecCCCHHH----------------HHHHhccCCC--CCCCcEEEEEeCCHHHHH
Q 006018 226 VGGLANIHLN-FERRRLSRMKVLIVFYDLTDLKQ----------------IDLLIGRLDG--FVPGSRVIITTRDVQLLK 286 (664)
Q Consensus 226 ~~~l~~~~l~-~~~~~L~~~~~LlVlDdv~~~~~----------------~~~l~~~~~~--~~~gs~IliTtR~~~~~~ 286 (664)
..+-....+. .+.......+.++++|+++.... ...++..+.. ...+..||.||...+...
T Consensus 89 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld 168 (301)
T 3cf0_A 89 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 168 (301)
T ss_dssp HHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSC
T ss_pred hcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccC
Confidence 1000011122 22223345679999999975321 2333332221 123556777776553321
Q ss_pred h--hcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 287 N--HRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 287 ~--~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
. .........+.++..+.++-.+++..+.
T Consensus 169 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 169 PAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 1 1111245688999999999999987766
No 194
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.34 E-value=2.2e-07 Score=96.08 Aligned_cols=129 Identities=15% Similarity=0.206 Sum_probs=80.4
Q ss_pred cCcccEEEcCCCCCCccccc-cccccccccccccccccc-cccc--CCCCCCcEEeecCCCC-------CCcccccc--C
Q 006018 488 LDSLKELYLGGCSNLKRFPE-ISCNIEDLDLKETAIEEL-PSSI--GNLSRLVDLDLTNCSG-------LKSVSSRL--C 554 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~-~~~~L~~L~l~~~~i~~l-p~~~--~~l~~L~~L~l~~~~~-------l~~lp~~~--~ 554 (664)
+++|+.|++++|.... ++. ...+|+.|++..+.+..- ...+ ..+++|+.|+|+.+.. +..+...+ .
T Consensus 171 ~P~L~~L~L~g~~~l~-l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS-IGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp CTTCCEEEEECCBTCB-CCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCCCcEEEEeCCCCce-eccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 6788889998874332 232 234788888887766421 1122 3678888888753211 11122122 2
Q ss_pred CCCCCCEEeeeCCCCCCcccccc---CCCCCCCEEEccCCCCcc-----ccccccCCCCCCEEeecCCCCC
Q 006018 555 NLKSLRRLNLSGCLKLEKLPEEI---GNLESLEYLNLAEKDFEK-----IPSSMKQLSKLSDLRLQNCKRL 617 (664)
Q Consensus 555 ~l~~L~~L~L~~~~~~~~~p~~l---~~l~~L~~L~l~~n~i~~-----lp~~i~~L~~L~~L~L~~~~~l 617 (664)
.+++|++|+|++|.+....+..+ ..+++|++|+|+.|.+.. ++..+.++++|+.|+|++|.+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 47888888888887543333222 356788888888888873 4555667788888888887643
No 195
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.29 E-value=7.5e-06 Score=80.59 Aligned_cols=155 Identities=17% Similarity=0.173 Sum_probs=84.4
Q ss_pred CCCCceeehhhHHHHHhhhcC---C-------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLLS---G-------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~---~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
...+++|.+..++++.+.+.. . ....+-+.|+|++|+||||||+.+++.....| +.+. ..+.....
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~~~ 85 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVEMF 85 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTTSC
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHHHh
Confidence 556789999888877665421 0 01134588999999999999999998764332 1111 11111111
Q ss_pred cchhHHhHHHH-HHHhcCceEEEEEecCCCH----------------HHHHHHhccCCC--CCCCcEEEEEeCCHHHHH-
Q 006018 227 GGLANIHLNFE-RRRLSRMKVLIVFYDLTDL----------------KQIDLLIGRLDG--FVPGSRVIITTRDVQLLK- 286 (664)
Q Consensus 227 ~~l~~~~l~~~-~~~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~--~~~gs~IliTtR~~~~~~- 286 (664)
.+.....+..+ .......+.++++|+++.. .....++..+.. ...+..||.||...+...
T Consensus 86 ~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~ 165 (257)
T 1lv7_A 86 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 165 (257)
T ss_dssp CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCG
T ss_pred hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCH
Confidence 11111122222 2223345789999998422 122333322221 123456677776543221
Q ss_pred hh-cCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 287 NH-RGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 287 ~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
.. ........+.++..+.++-.+++..+.
T Consensus 166 ~l~r~~rf~~~i~i~~P~~~~r~~il~~~~ 195 (257)
T 1lv7_A 166 ALLRPGRFDRQVVVGLPDVRGREQILKVHM 195 (257)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred HHcCCCcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 11 111245678888888888888887765
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=9.9e-06 Score=83.58 Aligned_cols=178 Identities=20% Similarity=0.237 Sum_probs=104.1
Q ss_pred CCCCCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhh
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDE 222 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 222 (664)
|...-.++.|.++.+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|-. ....+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~----v~~s~l 218 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR----VSGAEL 218 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE----EEGGGG
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE----EEhHHh
Confidence 444557788999999998876642 22234668999999999999999999986655421 122222
Q ss_pred hhcccchhHHhHHHHHH-HhcCceEEEEEecCCCHH----------------HHHHHhccCCCC--CCCcEEEEEeCCHH
Q 006018 223 SEKVGGLANIHLNFERR-RLSRMKVLIVFYDLTDLK----------------QIDLLIGRLDGF--VPGSRVIITTRDVQ 283 (664)
Q Consensus 223 ~~~~~~l~~~~l~~~~~-~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IliTtR~~~ 283 (664)
.....+-.+..+..+.+ .-...+++|++|+++..- .+..++..+..+ ..+..||.||-.++
T Consensus 219 ~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 219 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp SCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred hccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 22222222222333332 234568999999987421 133344333332 23445566776443
Q ss_pred HHH--hhcCCccccEEEecCCCHHHHHHHHHHhhhCCCC-CCccHHHHHHHHHHHhcCC
Q 006018 284 LLK--NHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNH-PAAGFLELSNIVIKYANGV 339 (664)
Q Consensus 284 ~~~--~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~gl 339 (664)
... .......+..+.++..+.++-.++|..+.-+-.. ...+ ...+++.+.|.
T Consensus 299 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~ 353 (405)
T 4b4t_J 299 ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGC 353 (405)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSC
T ss_pred hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCC
Confidence 311 1111236788999999999999999877632211 1222 34455666654
No 197
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.25 E-value=2.4e-06 Score=79.24 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=41.9
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
....++||+.+++.+.+.+.. ...+.+.|+|++|+|||+||+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~--~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR--RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS--SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC--CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999998865 23456789999999999999999988644
No 198
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.25 E-value=2.1e-05 Score=80.52 Aligned_cols=173 Identities=13% Similarity=0.084 Sum_probs=104.5
Q ss_pred hhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcc----eee-----------ccchhhhhc--cc
Q 006018 165 ESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGS----YFM-----------QNIRDESEK--VG 227 (664)
Q Consensus 165 ~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~----~~~-----------~~~~~~~~~--~~ 227 (664)
++..+.+...+..+ .-...+.++|++|+|||++|+.+++.+....... -.. .++...... ..
T Consensus 8 ~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred HHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence 44556666666543 2245689999999999999999999864332100 000 000000000 00
Q ss_pred chhHHhHHHHHHHh-----cCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCccccEEEe
Q 006018 228 GLANIHLNFERRRL-----SRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRVGHVFEV 299 (664)
Q Consensus 228 ~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~~l 299 (664)
.....+++.+.+.+ .+++-++|+|+++. .+..+.+...+....+++.+|++|.+.+ +...... ....+.+
T Consensus 87 ~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~S--Rc~~~~~ 164 (334)
T 1a5t_A 87 TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRS--RCRLHYL 164 (334)
T ss_dssp SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHT--TSEEEEC
T ss_pred CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhh--cceeeeC
Confidence 11111233333433 24578899999975 3556677776665556778787777653 2222221 3468999
Q ss_pred cCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHh
Q 006018 300 KELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLG 347 (664)
Q Consensus 300 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a 347 (664)
++++.++..+.+.... . -..+.+..+++.++|.|..+..+.
T Consensus 165 ~~~~~~~~~~~L~~~~----~---~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 165 APPPEQYAVTWLSREV----T---MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp CCCCHHHHHHHHHHHC----C---CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhc----C---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 9999999999998765 1 123456778999999997765443
No 199
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.23 E-value=6.1e-07 Score=92.82 Aligned_cols=131 Identities=15% Similarity=0.211 Sum_probs=86.2
Q ss_pred ccccccccccccccccccccCCCCCCcEEeecCCCCCCccccccC--CCCCCCEEeeeCCCC-------CCcccccc--C
Q 006018 510 CNIEDLDLKETAIEELPSSIGNLSRLVDLDLTNCSGLKSVSSRLC--NLKSLRRLNLSGCLK-------LEKLPEEI--G 578 (664)
Q Consensus 510 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~~--~l~~L~~L~L~~~~~-------~~~~p~~l--~ 578 (664)
++|+.|.++++.-..++. + .+++|+.|+|..|.........+. .+++|++|+|+.+.. ...+...+ .
T Consensus 172 P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp TTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 479999998874234554 3 388999999987654332222233 689999999864211 11112223 3
Q ss_pred CCCCCCEEEccCCCCcc-ccccc---cCCCCCCEEeecCCCCCCc----CCCCCCCCEEeeeCCCCCccccCCCccccc
Q 006018 579 NLESLEYLNLAEKDFEK-IPSSM---KQLSKLSDLRLQNCKRLQS----LPELPCGSSIHARHCTSLKTLSNSSTLLTR 649 (664)
Q Consensus 579 ~l~~L~~L~l~~n~i~~-lp~~i---~~L~~L~~L~L~~~~~l~~----lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~ 649 (664)
.+++|++|+|++|.+.. .+..+ ..+++|++|+|+.|.+... ++. .+..+++|+.|++++|.|+.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~-------~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD-------HVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT-------THHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh-------hcccCCcceEEECCCCcCCH
Confidence 57899999999998872 22223 2578999999998765442 333 23567899999999998863
No 200
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.18 E-value=8.3e-06 Score=85.76 Aligned_cols=106 Identities=12% Similarity=0.141 Sum_probs=66.9
Q ss_pred CCCcEEeecCCCCCCcc-ccccCCCCCCCEEeeeCCCCC-----CccccccCCCCCCCEEEccCCCCccccc-cccCCCC
Q 006018 533 SRLVDLDLTNCSGLKSV-SSRLCNLKSLRRLNLSGCLKL-----EKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSK 605 (664)
Q Consensus 533 ~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~-----~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~ 605 (664)
.+|+.+.+.. .+..+ +..|.++++|+.+.+.++... ..-+..|.++.+|+.+++. +.++.++. .|.++++
T Consensus 248 ~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~ 324 (401)
T 4fdw_A 248 SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRK 324 (401)
T ss_dssp CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCS
T ss_pred CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCC
Confidence 4555555532 23333 345667777777777765532 1334566777777777777 44666653 5677778
Q ss_pred CCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccccC
Q 006018 606 LSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLTRS 650 (664)
Q Consensus 606 L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~~~ 650 (664)
|+.+.|.++ +..++.. .|.+| +|+.|++++|.+...
T Consensus 325 L~~l~lp~~--l~~I~~~------aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 325 VTQLTIPAN--VTQINFS------AFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp CCEEEECTT--CCEECTT------SSSSS-CCCEEEECCSSCCBC
T ss_pred ccEEEECcc--ccEEcHH------hCCCC-CCCEEEEcCCCCccc
Confidence 888887553 4444442 57888 899999998877643
No 201
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.17 E-value=8.3e-06 Score=87.60 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=90.5
Q ss_pred CCCceeehhhHHHHHhhhcCC-----------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 158 KDQLVGVESIIKEIESQLLSG-----------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
...++|.+..+++|.+.+... ....+-|.|+|++|+|||++|+++++.....| +..+..+.....
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f----v~vn~~~l~~~~ 278 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSKL 278 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE----EEEEHHHHHTSC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE----EEEEchHhhhhh
Confidence 346899999999998877431 23345689999999999999999988753322 212222222211
Q ss_pred cchhHHhH-HHHHHHhcCceEEEEEecCCCH-------------HHHHHHhccCCC--CCCCcEEEEEeCCHHHH-Hhhc
Q 006018 227 GGLANIHL-NFERRRLSRMKVLIVFYDLTDL-------------KQIDLLIGRLDG--FVPGSRVIITTRDVQLL-KNHR 289 (664)
Q Consensus 227 ~~l~~~~l-~~~~~~L~~~~~LlVlDdv~~~-------------~~~~~l~~~~~~--~~~gs~IliTtR~~~~~-~~~~ 289 (664)
.+-....+ ..+.....+++.+|+||+++.. .....++..+.. ...+.+||.||...... ....
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHh
Confidence 11111112 2333444566789999998421 112233332221 12345666677654321 1111
Q ss_pred C-CccccEEEecCCCHHHHHHHHHHhh
Q 006018 290 G-SRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 290 ~-~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
. ......+.++..+.++-.+++..++
T Consensus 359 r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 359 RFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred CCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 1 1245679999999999999998876
No 202
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.9e-05 Score=82.65 Aligned_cols=158 Identities=18% Similarity=0.209 Sum_probs=94.1
Q ss_pred CCCCCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhh
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDE 222 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 222 (664)
|...-.++.|.++.+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|-. ....+.
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~----vs~s~L 279 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR----VIGSEL 279 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE----EEGGGG
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE----EEhHHh
Confidence 443556789999999998876531 22345679999999999999999999987654421 122222
Q ss_pred hhcccchhHHhHHHHH-HHhcCceEEEEEecCCCHH----------------HHHHHhccCCCC--CCCcEEEEEeCCHH
Q 006018 223 SEKVGGLANIHLNFER-RRLSRMKVLIVFYDLTDLK----------------QIDLLIGRLDGF--VPGSRVIITTRDVQ 283 (664)
Q Consensus 223 ~~~~~~l~~~~l~~~~-~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gs~IliTtR~~~ 283 (664)
.....+-.+..+..+. ..-...+++|++|+++..- ....++..+... ..+..||.||-.++
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 2222222222233222 2334568999999986421 122233333222 23334555665433
Q ss_pred HHH--hhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 284 LLK--NHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 284 ~~~--~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
... .......+..+.++..+.++-.++|..+.
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHS 393 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHH
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHh
Confidence 211 11111267889999999999999998776
No 203
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=9.7e-06 Score=83.40 Aligned_cols=177 Identities=14% Similarity=0.159 Sum_probs=102.9
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc-CCcceeeccchhhhhcccchhHH--h
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH-FEGSYFMQNIRDESEKVGGLANI--H 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~l~~~--~ 233 (664)
....++|.+..++.|...+..+ ..+.+.++|++|+||||+|+.+++.+... +...+.-.+... ..+.... .
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~----~~~~~~ir~~ 96 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD----DRGIDVVRNQ 96 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS----CCSHHHHHTH
T ss_pred cHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc----cccHHHHHHH
Confidence 4456889999999999888654 23338999999999999999999885432 111110001100 0011100 0
Q ss_pred HHHHHHH---hcCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCHH-HHHhhcCCccccEEEecCCCHHHH
Q 006018 234 LNFERRR---LSRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDVQ-LLKNHRGSRVGHVFEVKELSYNDS 307 (664)
Q Consensus 234 l~~~~~~---L~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~~-~~~~~~~~~~~~~~~l~~L~~~ea 307 (664)
+..+.+. ..+.+-++|+|+++. .+..+.+...+......++++++|.... +...... ....+.+.+++.++.
T Consensus 97 i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s--R~~~~~~~~l~~~~~ 174 (340)
T 1sxj_C 97 IKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS--QCTRFRFQPLPQEAI 174 (340)
T ss_dssp HHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHHH
T ss_pred HHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh--hceeEeccCCCHHHH
Confidence 1111111 123467899999864 3444555544433345667777776432 1111111 234789999999999
Q ss_pred HHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhH
Q 006018 308 LTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLAL 343 (664)
Q Consensus 308 ~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal 343 (664)
.+.+...+-.... .-..+..+.+++.++|.+--+
T Consensus 175 ~~~l~~~~~~~~~--~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 175 ERRIANVLVHEKL--KLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHHHHHHHHTTTC--CBCHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 8888776522211 122355677888899887643
No 204
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.16 E-value=2.1e-05 Score=84.37 Aligned_cols=150 Identities=16% Similarity=0.137 Sum_probs=82.1
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC------Ccceeeccchhhhhcccchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF------EGSYFMQNIRDESEKVGGLA 230 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~l~ 230 (664)
..+.+|||+.+++.+...|... ...-+.|+|++|+|||++|+.+++.+...+ ...++..+.. ....+...
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--~~~~g~~e 253 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--TKYRGEFE 253 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------C
T ss_pred CCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--ccccchHH
Confidence 4457999999999999998653 234568999999999999999999864432 1112211221 00011111
Q ss_pred HHhHHHHHH-HhcCceEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHHHhhc----CCccccEEEecCCCHH
Q 006018 231 NIHLNFERR-RLSRMKVLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLLKNHR----GSRVGHVFEVKELSYN 305 (664)
Q Consensus 231 ~~~l~~~~~-~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~----~~~~~~~~~l~~L~~~ 305 (664)
..+..+.+ .-...+.+|++| ...+....+.+.+. ....++|.+|.......... .......+.++..+.+
T Consensus 254 -~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e 328 (468)
T 3pxg_A 254 -DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVD 328 (468)
T ss_dssp -TTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHH
T ss_pred -HHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHH
Confidence 11222222 223567899999 33333344544443 22345666555433110000 0002346999999999
Q ss_pred HHHHHHHHhh
Q 006018 306 DSLTLFSRNA 315 (664)
Q Consensus 306 ea~~Lf~~~a 315 (664)
+..+++...+
T Consensus 329 ~~~~iL~~~~ 338 (468)
T 3pxg_A 329 ESIQILQGLR 338 (468)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999998665
No 205
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.7e-05 Score=83.10 Aligned_cols=159 Identities=19% Similarity=0.257 Sum_probs=96.3
Q ss_pred CCCCCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhh
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDE 222 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 222 (664)
|...-.++.|.++.+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|- .....+.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~----~v~~s~l 251 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI----FSPASGI 251 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEEGGGT
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE----EEehhhh
Confidence 443557789999999998776632 1233567999999999999999999998765442 1122222
Q ss_pred hhcccchhHHhHHHH-HHHhcCceEEEEEecCCCH----------------HHHHHHhccCCCC--CCCcEEEEEeCCHH
Q 006018 223 SEKVGGLANIHLNFE-RRRLSRMKVLIVFYDLTDL----------------KQIDLLIGRLDGF--VPGSRVIITTRDVQ 283 (664)
Q Consensus 223 ~~~~~~l~~~~l~~~-~~~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IliTtR~~~ 283 (664)
.....+-....+..+ ...-...+++|++|+++.. ..+..++..+..+ ..+..||.||-.++
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~ 331 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPD 331 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTT
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCch
Confidence 222222222223222 2233457899999998632 0123344333322 23456777776554
Q ss_pred HHHhh--cCCccccEEEecCCCHHHHHHHHHHhhh
Q 006018 284 LLKNH--RGSRVGHVFEVKELSYNDSLTLFSRNAF 316 (664)
Q Consensus 284 ~~~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 316 (664)
..... .....+..+.++..+.++-.++|..+.-
T Consensus 332 ~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (437)
T 4b4t_L 332 TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTA 366 (437)
T ss_dssp SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHH
T ss_pred hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhc
Confidence 43211 1112567889988899998999987764
No 206
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.15 E-value=2.9e-05 Score=79.54 Aligned_cols=264 Identities=17% Similarity=0.190 Sum_probs=136.1
Q ss_pred CCCCceeehhhHHHHHhhhcCC---CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESIIKEIESQLLSG---STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
....++|.+..++.+...+..+ ......++|+|++|+||||||+.++......|... . .... ....+
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~---s--g~~~-----~~~~~ 92 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT---S--GPVL-----VKQGD 92 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEE---E--TTTC-----CSHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE---e--chHh-----cCHHH
Confidence 4456889988888887776432 12235799999999999999999999864332110 0 0000 00112
Q ss_pred HHHHHHHhcCceEEEEEecCCCH--HHHHHHhccCCCC--------C----------CCcEEE-EEeCCHHHHHhhcCCc
Q 006018 234 LNFERRRLSRMKVLIVFYDLTDL--KQIDLLIGRLDGF--------V----------PGSRVI-ITTRDVQLLKNHRGSR 292 (664)
Q Consensus 234 l~~~~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~--------~----------~gs~Il-iTtR~~~~~~~~~~~~ 292 (664)
+..+...+. ++.++++|+++.. ...+.+...+... + +...++ .|++...+..... +.
T Consensus 93 l~~~~~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~-sR 170 (334)
T 1in4_A 93 MAAILTSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLR-SR 170 (334)
T ss_dssp HHHHHHHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHH-TT
T ss_pred HHHHHHHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHH-Hh
Confidence 222222222 3456778887542 2233332211110 0 111222 3444322211111 11
Q ss_pred cccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCchhHHHHhhhc------C---CCCHHHHHHHHH
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVPLALQVLGSYL------K---GMSEEEWESAVN 363 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glPLal~~~a~~l------~---~~~~~~w~~~l~ 363 (664)
......+++.+.++-.+++.+.+-... .....+.+..|++.++|.|..+..+...+ . ..+.+..+.+++
T Consensus 171 ~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~ 248 (334)
T 1in4_A 171 FGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTME 248 (334)
T ss_dssp CSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred cCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 334688999999999999988763211 12334668889999999997554332221 1 135666666666
Q ss_pred HhhcCCCCcccceeeeecCCCChhhhhhhhhcccccCC--CCHHHHHHHHHHcCCccccccc-eecccceeeee-CCeEE
Q 006018 364 KLKRMPHMDIQKVLKVSYDGLDDEEQNIFLDTACFFKG--NDQYLVMNFLDACRFSAKIGIS-RLVGKSLVTIS-NNKIT 439 (664)
Q Consensus 364 ~l~~~~~~~i~~~l~~sy~~L~~~~k~~~l~la~f~~~--~~~~~~~~~~~~~~~~~~~~l~-~L~~~~li~~~-~~~~~ 439 (664)
.+.. ...+++...+..+..++-.+.+ .....+...+.......+...+ .|...++|+.. .+++.
T Consensus 249 ~~~~------------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr~~ 316 (334)
T 1in4_A 249 VLNI------------DDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIV 316 (334)
T ss_dssp HHTC------------CTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEE
T ss_pred HhCC------------CcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeecccccHHh
Confidence 5431 1135666655555544433232 2333333333211101111111 67788988887 44544
Q ss_pred echHHHH
Q 006018 440 MHDLLQE 446 (664)
Q Consensus 440 mHdlv~~ 446 (664)
...-.+.
T Consensus 317 ~~~~~~~ 323 (334)
T 1in4_A 317 TEKAYKH 323 (334)
T ss_dssp CHHHHHH
T ss_pred hHHHHHH
Confidence 4433333
No 207
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.1e-05 Score=84.38 Aligned_cols=158 Identities=18% Similarity=0.248 Sum_probs=95.4
Q ss_pred CCCCCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhh
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDE 222 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 222 (664)
|...-.++.|.++.+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|- ..+..+.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~----~v~~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL----KLAAPQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE----EEEGGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE----EEehhhh
Confidence 443567889999999998776421 1233567999999999999999999998655432 1122222
Q ss_pred hhcccchhHHhHHHHHH-HhcCceEEEEEecCCCHH----------------HHHHHhccCCCCC--CCcEEEEEeCCHH
Q 006018 223 SEKVGGLANIHLNFERR-RLSRMKVLIVFYDLTDLK----------------QIDLLIGRLDGFV--PGSRVIITTRDVQ 283 (664)
Q Consensus 223 ~~~~~~l~~~~l~~~~~-~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~gs~IliTtR~~~ 283 (664)
.....+-.+..+..+.+ .-...+++|++|+++..- ....++..+..+. .+..||.||..++
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~ 331 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVD 331 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCC
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCch
Confidence 22222222222333322 223468999999985321 1233444444333 2345555776554
Q ss_pred HHHhh--cCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 284 LLKNH--RGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 284 ~~~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
..... .....+..+.++..+.++-.++|..+.
T Consensus 332 ~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~ 365 (434)
T 4b4t_M 332 VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHS 365 (434)
T ss_dssp CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHh
Confidence 32211 111367789999999999999998765
No 208
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.11 E-value=4.1e-05 Score=80.44 Aligned_cols=148 Identities=9% Similarity=0.092 Sum_probs=90.9
Q ss_pred cCcccEEEcCCCCCCcccccccc---ccccccccccccccccc-ccCCCCCCcEEeecCCCCC-----CccccccCCCCC
Q 006018 488 LDSLKELYLGGCSNLKRFPEISC---NIEDLDLKETAIEELPS-SIGNLSRLVDLDLTNCSGL-----KSVSSRLCNLKS 558 (664)
Q Consensus 488 l~~L~~L~l~~~~~~~~~p~~~~---~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l-----~~lp~~~~~l~~ 558 (664)
|++|+.+++..+ +..++.... +|+.+.+ .+.++.++. .|.++++|+.+.+.++... ..-+..|.++++
T Consensus 225 ~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~ 301 (401)
T 4fdw_A 225 TSQLKTIEIPEN--VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK 301 (401)
T ss_dssp CTTCCCEECCTT--CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred CCCCCEEecCCC--ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence 666777777653 333433222 5666666 344566644 5677888888888764322 123356777888
Q ss_pred CCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccc-ccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCC-C
Q 006018 559 LRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIP-SSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCT-S 636 (664)
Q Consensus 559 L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~-~ 636 (664)
|+.+.|.. .+...-...|.++.+|+.+.|..+ ++.++ ..|.++ +|+.|++++|......+. .+.+|+ +
T Consensus 302 L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~-------~F~~~~~~ 371 (401)
T 4fdw_A 302 LARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK-------VWYGFPDD 371 (401)
T ss_dssp CCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS-------SCCCSCTT
T ss_pred CCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc-------cccCCCCC
Confidence 88888874 333333456777888888888544 66664 456777 888888888644332222 455563 6
Q ss_pred CccccCCCcccc
Q 006018 637 LKTLSNSSTLLT 648 (664)
Q Consensus 637 L~~L~ls~N~l~ 648 (664)
+..|.+..+.+.
T Consensus 372 l~~l~vp~~~~~ 383 (401)
T 4fdw_A 372 ITVIRVPAESVE 383 (401)
T ss_dssp CCEEEECGGGHH
T ss_pred ccEEEeCHHHHH
Confidence 777777776654
No 209
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.11 E-value=3.6e-06 Score=84.63 Aligned_cols=149 Identities=10% Similarity=0.047 Sum_probs=85.1
Q ss_pred ceeehhhHHHHHhhhcCC--CCcceEEEEecCCCCChHHHHHHHHHHhhccCC-----c--ceeeccc---------hhh
Q 006018 161 LVGVESIIKEIESQLLSG--STEFNTVGIWGIGGIGKTTIASAIYSNISSHFE-----G--SYFMQNI---------RDE 222 (664)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-----~--~~~~~~~---------~~~ 222 (664)
+.|||+++++|...|... ....+.+.|+|++|+|||++|+.+++....... . .+.+... ...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 789999999998777531 234578899999999999999999998754221 1 1122100 011
Q ss_pred hhccc------chhHHhHHHHHHHh---cCceEEEEEecCCCHH---HHHHHhccCCCCCCCc--EEEEEeCCH---H--
Q 006018 223 SEKVG------GLANIHLNFERRRL---SRMKVLIVFYDLTDLK---QIDLLIGRLDGFVPGS--RVIITTRDV---Q-- 283 (664)
Q Consensus 223 ~~~~~------~l~~~~l~~~~~~L---~~~~~LlVlDdv~~~~---~~~~l~~~~~~~~~gs--~IliTtR~~---~-- 283 (664)
..... ......++.+.+.+ .+++++++||+++... .+..+... +. ...+ .||.++-.. .
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~-~~-~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKW-IS-SKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHH-HH-CSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhc-cc-ccCCcEEEEEEecCcccchhh
Confidence 11110 00111233333333 4568999999997642 23333221 11 1222 233334322 1
Q ss_pred H----HHhhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 284 L----LKNHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 284 ~----~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
+ ...+ ....+..++++.+|-.+++..++
T Consensus 180 L~~~v~SR~----~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 180 INIMPSLKA----HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHTCHHHHT----TEEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhhccC----CceEEEeCCCCHHHHHHHHHHHH
Confidence 1 1122 12578999999999999998776
No 210
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=4.4e-05 Score=79.05 Aligned_cols=158 Identities=19% Similarity=0.248 Sum_probs=94.4
Q ss_pred CCCCCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhh
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDE 222 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 222 (664)
|...-.++.|.++.+++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|-. .+..+.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~----v~~s~l 252 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR----IVGSEL 252 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE----EESGGG
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE----EEHHHh
Confidence 444556788999999998776531 11235679999999999999999999987654422 122222
Q ss_pred hhcccchhHHhHHHHHH-HhcCceEEEEEecCCCH----------------HHHHHHhccCCCC--CCCcEEEEEeCCHH
Q 006018 223 SEKVGGLANIHLNFERR-RLSRMKVLIVFYDLTDL----------------KQIDLLIGRLDGF--VPGSRVIITTRDVQ 283 (664)
Q Consensus 223 ~~~~~~l~~~~l~~~~~-~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IliTtR~~~ 283 (664)
.....+-.+..+..+.+ .-...+++|++|+++.. ..+..++..+... ..+..||.||-.++
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd 332 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE 332 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh
Confidence 22222222222332222 23456899999998631 1122333332222 23445666776554
Q ss_pred HHHhhc--CCccccEEEecCCCHHHHHHHHHHhh
Q 006018 284 LLKNHR--GSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 284 ~~~~~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
.....- ....+..+.++..+.++-.++|..+.
T Consensus 333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHT 366 (437)
T ss_dssp TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHH
T ss_pred hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHh
Confidence 432211 11356778898889999899998776
No 211
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.06 E-value=5.1e-05 Score=80.83 Aligned_cols=177 Identities=17% Similarity=0.201 Sum_probs=98.4
Q ss_pred CCCCceeehhhHHHHHhhhcC----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLLS----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
...+++|.++.++++.+.+.. +..-.+-|.|+|++|+|||+||+.++......|- ..+..+.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~----~is~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFF----HISGSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEE----EEEGGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCee----eCCHHHHHHHH
Confidence 446789999888777665421 0111345889999999999999999987643331 11112211111
Q ss_pred cchhHHhH-HHHHHHhcCceEEEEEecCCCH----------------HHHHHHhccCCCC--CCCcEEEEEeCCHHHHHh
Q 006018 227 GGLANIHL-NFERRRLSRMKVLIVFYDLTDL----------------KQIDLLIGRLDGF--VPGSRVIITTRDVQLLKN 287 (664)
Q Consensus 227 ~~l~~~~l-~~~~~~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~--~~gs~IliTtR~~~~~~~ 287 (664)
.+.....+ ..+.......+.+|+||+++.. ..+..++..+..+ ..+..||.||...+....
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 11111122 2333444567899999998542 1233443332211 235567777776544321
Q ss_pred --hcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHHHHHHHHHhcCCc
Q 006018 288 --HRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLELSNIVIKYANGVP 340 (664)
Q Consensus 288 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~glP 340 (664)
.........+.++..+.++-.+++..++-......+. ....+++.+.|..
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 1111245588899999888888887766322111111 1334666677766
No 212
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.05 E-value=3.4e-06 Score=75.03 Aligned_cols=111 Identities=17% Similarity=0.032 Sum_probs=62.4
Q ss_pred CceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc-cCCcceeeccchhhhhcccchhHHhHHHHH
Q 006018 160 QLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS-HFEGSYFMQNIRDESEKVGGLANIHLNFER 238 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 238 (664)
+++|++..++++.+.+..-......|.|+|.+|+|||++|+.+++.... ..+.+ +. ....... .. ....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v--~~-~~~~~~~-~~----~~~~~~ 73 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV--YR-ELTPDNA-PQ----LNDFIA 73 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE--EE-ECCTTTS-SC----HHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE--EE-CCCCCcc-hh----hhcHHH
Confidence 5799999999988877432223345889999999999999999886422 22211 21 1111111 00 011111
Q ss_pred HHhcCceEEEEEecCCCH--HHHHHHhccCCCCCCCcEEEEEeCC
Q 006018 239 RRLSRMKVLIVFYDLTDL--KQIDLLIGRLDGFVPGSRVIITTRD 281 (664)
Q Consensus 239 ~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~gs~IliTtR~ 281 (664)
. ...-.|+||+++.. +....+...+.......+||.||..
T Consensus 74 ~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 74 L---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp H---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred H---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1 13357899999753 3334444444333445678877764
No 213
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.00 E-value=1.4e-06 Score=81.09 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=73.3
Q ss_pred cccCCCCCCcEEeecCCCCCCc-----cccccCCCCCCCEEeeeCCCCCCc----cccccCCCCCCCEEEccCCCCcc--
Q 006018 527 SSIGNLSRLVDLDLTNCSGLKS-----VSSRLCNLKSLRRLNLSGCLKLEK----LPEEIGNLESLEYLNLAEKDFEK-- 595 (664)
Q Consensus 527 ~~~~~l~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~l~~n~i~~-- 595 (664)
..+...++|+.|+|++|+.+.. +...+...++|++|+|++|.+... +...+...++|++|+|++|.|..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 3455667777888877623322 334455667788888888775432 33444555678888888888773
Q ss_pred ---ccccccCCCCCCEEee--cCCCCCCc----CCCCCCCCEEeeeCCCCCccccCCCcccc
Q 006018 596 ---IPSSMKQLSKLSDLRL--QNCKRLQS----LPELPCGSSIHARHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 596 ---lp~~i~~L~~L~~L~L--~~~~~l~~----lp~l~~~~~l~~~~~~~L~~L~ls~N~l~ 648 (664)
+...+...++|++|+| ++|.+... +.. .+..+++|+.|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~-------~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-------MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-------HHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH-------HHHhCCCcCEEeccCCCCC
Confidence 4556777778888888 66654332 222 3445677888888888765
No 214
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.99 E-value=2.9e-05 Score=78.48 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=38.1
Q ss_pred CCceeehhhHHHHHhhhcC------------CCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 159 DQLVGVESIIKEIESQLLS------------GSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~------------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..++|++..++.+...+.. .......+.|+|++|+|||++|+.+++...
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999988877643 011235688999999999999999998864
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.99 E-value=7.6e-05 Score=85.48 Aligned_cols=155 Identities=17% Similarity=0.171 Sum_probs=90.9
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC------Ccceeeccchhhhh--cccc
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF------EGSYFMQNIRDESE--KVGG 228 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~--~~~~ 228 (664)
....++||+.+++++.+.|... ....+.|+|.+|+|||++|+.+++.+.... ...++..+...... ...+
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 4457999999999999988643 345678999999999999999998864321 22223222222211 1111
Q ss_pred hhHHhHHHHHHHhc-CceEEEEEecCCCH----------HH-HHHHhccCCCCCCCcEEEEEeCCHHHHHhhc----CCc
Q 006018 229 LANIHLNFERRRLS-RMKVLIVFYDLTDL----------KQ-IDLLIGRLDGFVPGSRVIITTRDVQLLKNHR----GSR 292 (664)
Q Consensus 229 l~~~~l~~~~~~L~-~~~~LlVlDdv~~~----------~~-~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~----~~~ 292 (664)
..+..+..+.+.+. .++.+|++|+++.. .+ ...+...+. ..+.++|.+|.......... ...
T Consensus 262 ~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~ 339 (758)
T 1r6b_X 262 DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR 339 (758)
T ss_dssp CHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGG
T ss_pred hHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHh
Confidence 11222333334443 35789999999754 22 233333332 23456666666444321110 001
Q ss_pred cccEEEecCCCHHHHHHHHHHhh
Q 006018 293 VGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 293 ~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
....+.++..+.++..+++....
T Consensus 340 Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 340 RFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp GEEEEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCHHHHHHHHHHHH
Confidence 23468999999999988887543
No 216
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.98 E-value=4e-06 Score=83.11 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=83.5
Q ss_pred CCCCceeehhhHHHHHhhhcC----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLLS----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
...+++|.+..++++.+.+.. +....+-+.|+|++|+|||+||+.+++.....|-... ........
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~----~~~~~~~~ 84 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG----GSSFIEMF 84 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC----SCTTTTSC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEec----hHHHHHhh
Confidence 557899999988888776641 1111234789999999999999999998654332111 11110000
Q ss_pred cchhHHhH-HHHHHHhcCceEEEEEecCCCHHH-----------------HHHHhccCCCCC---CCcEEEEEeCCHHHH
Q 006018 227 GGLANIHL-NFERRRLSRMKVLIVFYDLTDLKQ-----------------IDLLIGRLDGFV---PGSRVIITTRDVQLL 285 (664)
Q Consensus 227 ~~l~~~~l-~~~~~~L~~~~~LlVlDdv~~~~~-----------------~~~l~~~~~~~~---~gs~IliTtR~~~~~ 285 (664)
.+.....+ ..+.......+.+|+||+++.... +..+...+.... ....||.||......
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 164 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEIL 164 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTS
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhc
Confidence 00000000 111222234568999999964311 122333222211 224566676654321
Q ss_pred H-hh-cCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 286 K-NH-RGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 286 ~-~~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
. .. ........+.++..+.++-.+++...+
T Consensus 165 d~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 165 DPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1 11 101134567888888888888887665
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=4.8e-05 Score=79.61 Aligned_cols=158 Identities=20% Similarity=0.214 Sum_probs=88.9
Q ss_pred CCCCCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhh
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDE 222 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 222 (664)
|...-.++.|.++.+++|.+.+.. +-...+-|.++|++|+|||+||+++++.....|-. .+..+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~----v~~~~l 242 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR----VNGSEF 242 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE----EEGGGT
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE----Eecchh
Confidence 333556789999999988776532 22335669999999999999999999987554421 122222
Q ss_pred hhcccchhHHhHHHHHH-HhcCceEEEEEecCCCHH----------------HHHHHhccCCC--CCCCcEEEEEeCCHH
Q 006018 223 SEKVGGLANIHLNFERR-RLSRMKVLIVFYDLTDLK----------------QIDLLIGRLDG--FVPGSRVIITTRDVQ 283 (664)
Q Consensus 223 ~~~~~~l~~~~l~~~~~-~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~--~~~gs~IliTtR~~~ 283 (664)
.....+-.+..+..+.+ .-...++++++|+++..- .+..++..+.. ...+..||.||-.++
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~ 322 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRAD 322 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 22222222222332222 234568999999985321 12233333221 123445666776443
Q ss_pred HHH--hhcCCccccEEEecCCC-HHHHHHHHHHhh
Q 006018 284 LLK--NHRGSRVGHVFEVKELS-YNDSLTLFSRNA 315 (664)
Q Consensus 284 ~~~--~~~~~~~~~~~~l~~L~-~~ea~~Lf~~~a 315 (664)
... .......+..++++.++ .++-.++|..+.
T Consensus 323 ~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~ 357 (428)
T 4b4t_K 323 TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIA 357 (428)
T ss_dssp SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHH
T ss_pred hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHh
Confidence 211 11111256678887665 455556666655
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.97 E-value=1.8e-05 Score=91.73 Aligned_cols=170 Identities=16% Similarity=0.133 Sum_probs=89.5
Q ss_pred hHhhhhhccccccccCCCCCCCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC------
Q 006018 137 LIEGNVNDISKKLSDLFPSDNKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF------ 210 (664)
Q Consensus 137 ~~~~~~~~~~~~l~~~~p~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------ 210 (664)
.++++..+...+.. |. ..+.+|||+.+++.+...|... ..+.+.|+|.+|+|||++|+.+++.+....
T Consensus 152 ~l~~~~~~l~~~~r---~~-~ld~viGr~~~i~~l~~~l~~~--~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~ 225 (854)
T 1qvr_A 152 ALEQYGIDLTRLAA---EG-KLDPVIGRDEEIRRVIQILLRR--TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLK 225 (854)
T ss_dssp HHHHHEEEHHHHHH---TT-CSCCCCSCHHHHHHHHHHHHCS--SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTST
T ss_pred hHHHHHHhHHHHHh---cC-CCcccCCcHHHHHHHHHHHhcC--CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhc
Confidence 34444444444332 22 4567999999999999988653 234578999999999999999999864421
Q ss_pred Ccceeeccchhhhhccc--chhHHhHHHHHHHhc--CceEEEEEecCCCHH----------HHHHHhccCCCCCCCcEEE
Q 006018 211 EGSYFMQNIRDESEKVG--GLANIHLNFERRRLS--RMKVLIVFYDLTDLK----------QIDLLIGRLDGFVPGSRVI 276 (664)
Q Consensus 211 ~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~L~--~~~~LlVlDdv~~~~----------~~~~l~~~~~~~~~gs~Il 276 (664)
...++..+......... +-....+..+.+.+. +++.+|++|+++... ....+...+. ..+..+|
T Consensus 226 ~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I 303 (854)
T 1qvr_A 226 GKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLI 303 (854)
T ss_dssp TCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEE
T ss_pred CCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEE
Confidence 12222222222211000 111112333333332 367899999997643 1112222222 1234566
Q ss_pred EEeCCHHHHH---hhcCCccccEEEecCCCHHHHHHHHHHh
Q 006018 277 ITTRDVQLLK---NHRGSRVGHVFEVKELSYNDSLTLFSRN 314 (664)
Q Consensus 277 iTtR~~~~~~---~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 314 (664)
.+|....... ..........+.++.++.++..+++...
T Consensus 304 ~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 304 GATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp EEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred EecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 6555433211 0111112345899999999999998644
No 219
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.97 E-value=1.1e-05 Score=74.71 Aligned_cols=122 Identities=19% Similarity=0.130 Sum_probs=60.9
Q ss_pred CCCcee----ehhhHHHHHhhhcCCC-CcceEEEEecCCCCChHHHHHHHHHHhhccCC-cceeeccchhhhhccc-chh
Q 006018 158 KDQLVG----VESIIKEIESQLLSGS-TEFNTVGIWGIGGIGKTTIASAIYSNISSHFE-GSYFMQNIRDESEKVG-GLA 230 (664)
Q Consensus 158 ~~~~vG----r~~~~~~l~~~L~~~~-~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~-~l~ 230 (664)
.++|++ ....++.+.+++..-. .....++|+|++|+||||||+.++........ .+.++. ..+...... ...
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-TKDLIFRLKHLMD 87 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-HHHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHHHHHHhc
Confidence 344554 3344444555443221 23468999999999999999999998753222 223332 222111100 000
Q ss_pred HHhHHHHHHHhcCceEEEEEecCCC--HHH--HHHHhccCCC-CCCCcEEEEEeCC
Q 006018 231 NIHLNFERRRLSRMKVLIVFYDLTD--LKQ--IDLLIGRLDG-FVPGSRVIITTRD 281 (664)
Q Consensus 231 ~~~l~~~~~~L~~~~~LlVlDdv~~--~~~--~~~l~~~~~~-~~~gs~IliTtR~ 281 (664)
........+.+. +.-+|||||++. .+. .+.+...+.. ...|..||+||..
T Consensus 88 ~~~~~~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 88 EGKDTKFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HTCCSHHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CchHHHHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 000111222222 456889999962 221 1222221111 1246788888873
No 220
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.95 E-value=0.00012 Score=71.67 Aligned_cols=155 Identities=15% Similarity=0.160 Sum_probs=83.1
Q ss_pred CCCCceeehhhHHHHHhhhcC--C--------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLLS--G--------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
...+++|.+....++.+.... . -.-.+-+.|+|++|+||||||+.++...... .+.+. ..+.....
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~---~i~~~-~~~~~~~~ 89 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEMF 89 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEE-HHHHHHSC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEee-HHHHHHHH
Confidence 446788888777666554321 0 0011238999999999999999999876421 12221 11111111
Q ss_pred cchhHHhHHHHHHHhc-CceEEEEEecCCCHH----------------HHHHHhccCCCCCC--CcEEEEEeCCHHHHHh
Q 006018 227 GGLANIHLNFERRRLS-RMKVLIVFYDLTDLK----------------QIDLLIGRLDGFVP--GSRVIITTRDVQLLKN 287 (664)
Q Consensus 227 ~~l~~~~l~~~~~~L~-~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~~~--gs~IliTtR~~~~~~~ 287 (664)
.......+..+.+... ..+.++++|+++... ....+...+..... ...++.||..++....
T Consensus 90 ~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~ 169 (254)
T 1ixz_A 90 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 169 (254)
T ss_dssp TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCG
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCH
Confidence 1111112333333332 356899999985321 12233333322222 2244556666654321
Q ss_pred hc--CCccccEEEecCCCHHHHHHHHHHhh
Q 006018 288 HR--GSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 288 ~~--~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
.- .......+.++..+.++-.+++..++
T Consensus 170 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 170 ALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp GGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred HHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 11 11255678899999988888887665
No 221
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.91 E-value=3.6e-06 Score=78.34 Aligned_cols=92 Identities=12% Similarity=0.159 Sum_probs=63.3
Q ss_pred cccccCCCCCCcEEeecCCCCCC----ccccccCCCCCCCEEeeeCCCCCCc----cccccCCCCCCCEEEc--cCCCCc
Q 006018 525 LPSSIGNLSRLVDLDLTNCSGLK----SVSSRLCNLKSLRRLNLSGCLKLEK----LPEEIGNLESLEYLNL--AEKDFE 594 (664)
Q Consensus 525 lp~~~~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~L~~~~~~~~----~p~~l~~l~~L~~L~l--~~n~i~ 594 (664)
+...+...++|++|+|++|.... .+...+...++|++|+|++|.+... +...+...++|++|+| ++|.+.
T Consensus 57 l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 57 CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 44455667778888888765432 1333445567888888888875432 4556677778888888 778887
Q ss_pred c-----ccccccCCCCCCEEeecCCCC
Q 006018 595 K-----IPSSMKQLSKLSDLRLQNCKR 616 (664)
Q Consensus 595 ~-----lp~~i~~L~~L~~L~L~~~~~ 616 (664)
. +...+...++|++|+|++|.+
T Consensus 137 ~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 137 NNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 2 445666778889999888753
No 222
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.84 E-value=0.00011 Score=83.98 Aligned_cols=150 Identities=16% Similarity=0.144 Sum_probs=83.0
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC------Ccceeeccchhhhhcccchh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF------EGSYFMQNIRDESEKVGGLA 230 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~l~ 230 (664)
..+.+|||+.+++++...|... ...-+.++|++|+|||++|+.+++.+.... ...++..+. .....+..
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--g~~~~G~~- 252 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--GTKYRGEF- 252 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--cccccchH-
Confidence 4567999999999999988653 234578999999999999999999863321 122222122 00001111
Q ss_pred HHhHHH-HHHHhcCceEEEEEecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHHHhhc----CCccccEEEecCCCHH
Q 006018 231 NIHLNF-ERRRLSRMKVLIVFYDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLLKNHR----GSRVGHVFEVKELSYN 305 (664)
Q Consensus 231 ~~~l~~-~~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~~~----~~~~~~~~~l~~L~~~ 305 (664)
+..+.. +......++.+|++| ...+....+.+.+. ....++|.||.......... .......+.++.++.+
T Consensus 253 e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~ 328 (758)
T 3pxi_A 253 EDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVD 328 (758)
T ss_dssp CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHH
T ss_pred HHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHH
Confidence 111222 222334567899999 33333444544443 23456666665443110000 0001256999999999
Q ss_pred HHHHHHHHhh
Q 006018 306 DSLTLFSRNA 315 (664)
Q Consensus 306 ea~~Lf~~~a 315 (664)
+..+++....
T Consensus 329 ~~~~il~~~~ 338 (758)
T 3pxi_A 329 ESIQILQGLR 338 (758)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHH
Confidence 9999998654
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=2.7e-06 Score=83.48 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=19.8
Q ss_pred ccCCCCCCCEEEccCCCCccccccccCCC--CCCEEeecCCCCCCcCC
Q 006018 576 EIGNLESLEYLNLAEKDFEKIPSSMKQLS--KLSDLRLQNCKRLQSLP 621 (664)
Q Consensus 576 ~l~~l~~L~~L~l~~n~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp 621 (664)
.+..+++|+.|+|++|.|..+. .+..++ +|+.|+|++|++.+.+|
T Consensus 191 ~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred HHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence 3334444555555555444331 222222 55555555555444333
No 224
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.82 E-value=0.00017 Score=72.25 Aligned_cols=127 Identities=16% Similarity=0.169 Sum_probs=65.8
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHHHHh-----cCceEEEEEecCCC
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFERRRL-----SRMKVLIVFYDLTD 255 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~L-----~~~~~LlVlDdv~~ 255 (664)
..+.+.++|++|+|||+||+.+++.....|- ..+..+......+-....+..+.+.. ...+.+|+||+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~i----~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINPI----MMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCCE----EEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCEE----EEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 3567889999999999999999998743331 11122221111111111121111111 45689999999953
Q ss_pred HHH---------------HHHHhccCC-------------CCCCCcEEEEEeCCHH-----HHHhhcCCccccEEEecCC
Q 006018 256 LKQ---------------IDLLIGRLD-------------GFVPGSRVIITTRDVQ-----LLKNHRGSRVGHVFEVKEL 302 (664)
Q Consensus 256 ~~~---------------~~~l~~~~~-------------~~~~gs~IliTtR~~~-----~~~~~~~~~~~~~~~l~~L 302 (664)
... ...+...+. ....+..||.||...+ +..... ....+.++
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R---~d~~i~~P-- 185 (293)
T 3t15_A 111 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGR---MEKFYWAP-- 185 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHH---EEEEEECC--
T ss_pred hcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCC---CceeEeCc--
Confidence 211 122322221 1123456788887542 211111 23344443
Q ss_pred CHHHHHHHHHHhhh
Q 006018 303 SYNDSLTLFSRNAF 316 (664)
Q Consensus 303 ~~~ea~~Lf~~~a~ 316 (664)
+.++-.+++..+..
T Consensus 186 ~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 186 TREDRIGVCTGIFR 199 (293)
T ss_dssp CHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHhcc
Confidence 88888888876653
No 225
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.80 E-value=3.3e-05 Score=72.84 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=39.8
Q ss_pred CCCCceeehh----hHHHHHhhhcCCCCc--ceEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 157 NKDQLVGVES----IIKEIESQLLSGSTE--FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 157 ~~~~~vGr~~----~~~~l~~~L~~~~~~--~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
....|++.+. .++.+.+++...... .+.+.|+|++|+|||+||+.+++....+...+.++
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4456776553 344555555433222 26889999999999999999999876554444444
No 226
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.78 E-value=8.4e-06 Score=72.28 Aligned_cols=108 Identities=12% Similarity=-0.055 Sum_probs=58.4
Q ss_pred CCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHhHHHHH
Q 006018 159 DQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIHLNFER 238 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 238 (664)
-.++|++..++++.+.+..-......|.|+|.+|+|||++|+.+++... ..+.+ +...... .....+.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~-~~~~~~~-------~~~~~~~ 71 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT----PWVSP-ARVEYLI-------DMPMELL 71 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS----CEECC-SSTTHHH-------HCHHHHH
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC----CeEEe-chhhCCh-------HhhhhHH
Confidence 3589999999988877643212234588999999999999999887543 11111 1111111 0011111
Q ss_pred HHhcCceEEEEEecCCCH--HHHHHHhccCCCC-CCCcEEEEEeC
Q 006018 239 RRLSRMKVLIVFYDLTDL--KQIDLLIGRLDGF-VPGSRVIITTR 280 (664)
Q Consensus 239 ~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs~IliTtR 280 (664)
+. .+.-.++||+++.. +....+...+... ..+.++|+||.
T Consensus 72 ~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 72 QK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp HH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred Hh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 11 12357889999753 3333343332211 24567888775
No 227
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.77 E-value=0.00025 Score=70.51 Aligned_cols=155 Identities=15% Similarity=0.167 Sum_probs=83.6
Q ss_pred CCCCceeehhhHHHHHhhhcCC-C---------CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLLSG-S---------TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-~---------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
...+++|.+..++++.+....- . .-.+-+.|+|++|+||||||+.++...... .+.+. ..+.....
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~---~i~~~-~~~~~~~~ 113 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFVEMF 113 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEE-HHHHHHST
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCC---EEEec-HHHHHHHH
Confidence 5567899988777776544210 0 011238999999999999999999876421 12221 11111111
Q ss_pred cchhHHhHHHHHHHhc-CceEEEEEecCCCH----------------HHHHHHhccCCCCCCC--cEEEEEeCCHHHHHh
Q 006018 227 GGLANIHLNFERRRLS-RMKVLIVFYDLTDL----------------KQIDLLIGRLDGFVPG--SRVIITTRDVQLLKN 287 (664)
Q Consensus 227 ~~l~~~~l~~~~~~L~-~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~g--s~IliTtR~~~~~~~ 287 (664)
.......+..+.+... ..+.++++|+++.. ..+..+...+...... ..++.||..++....
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 1111112323333322 35689999998532 1123333333322222 234446665543211
Q ss_pred --hcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 288 --HRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 288 --~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
.........+.++..+.++-.+++..++
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 223 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHA 223 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHH
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHH
Confidence 1111256688999999988888887665
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.75 E-value=9.9e-05 Score=83.20 Aligned_cols=155 Identities=18% Similarity=0.249 Sum_probs=92.5
Q ss_pred CCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
.-.++.|.++.+++|.+.+.. +-...+-|.++|++|+|||+||+++++....+| +..+..+....
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~----~~v~~~~l~sk 277 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF----FLINGPEIMSK 277 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE----EEEEHHHHHSS
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE----EEEEhHHhhcc
Confidence 445688999999888876531 112356799999999999999999998765433 22233333333
Q ss_pred ccchhHHhHHHH-HHHhcCceEEEEEecCCCHH-------------HHHHHhccCCCC--CCCcEEEEEeCCHHHHHh-h
Q 006018 226 VGGLANIHLNFE-RRRLSRMKVLIVFYDLTDLK-------------QIDLLIGRLDGF--VPGSRVIITTRDVQLLKN-H 288 (664)
Q Consensus 226 ~~~l~~~~l~~~-~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs~IliTtR~~~~~~~-~ 288 (664)
..+-.+..+..+ .......+.+|++|+++..- ....++..+... ..+.-||.||...+.... .
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~AL 357 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPAL 357 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTT
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHH
Confidence 222223333333 33345678999999986421 123333222211 123345556654433211 1
Q ss_pred c-CCccccEEEecCCCHHHHHHHHHHhh
Q 006018 289 R-GSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 289 ~-~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
. .......++++..+.++-.++|..+.
T Consensus 358 rR~GRFd~~I~i~~Pd~~~R~~IL~~~l 385 (806)
T 3cf2_A 358 RRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTC
T ss_pred hCCcccceEEecCCCCHHHHHHHHHHHh
Confidence 1 11256789999999999999998775
No 229
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=2.5e-05 Score=71.03 Aligned_cols=84 Identities=15% Similarity=0.271 Sum_probs=39.2
Q ss_pred CCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCC-ccccccCCC----CCCCEEEccCC-CCcc--ccccccCCCC
Q 006018 534 RLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLE-KLPEEIGNL----ESLEYLNLAEK-DFEK--IPSSMKQLSK 605 (664)
Q Consensus 534 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~-~~p~~l~~l----~~L~~L~l~~n-~i~~--lp~~i~~L~~ 605 (664)
+|+.||+++|.....--..+..+++|+.|+|++|..+. .--..+..+ ++|++|+|++| .++. + ..+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCCC
Confidence 44555555544221111234455555555555554222 111222332 24666666654 3441 2 23456677
Q ss_pred CCEEeecCCCCCC
Q 006018 606 LSDLRLQNCKRLQ 618 (664)
Q Consensus 606 L~~L~L~~~~~l~ 618 (664)
|++|+|++|+.++
T Consensus 141 L~~L~L~~c~~It 153 (176)
T 3e4g_A 141 LKYLFLSDLPGVK 153 (176)
T ss_dssp CCEEEEESCTTCC
T ss_pred CCEEECCCCCCCC
Confidence 7777777776443
No 230
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.75 E-value=0.00024 Score=76.13 Aligned_cols=155 Identities=16% Similarity=0.205 Sum_probs=85.4
Q ss_pred CCCCceeehhhHHHHHhhhcC--C--------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcc
Q 006018 157 NKDQLVGVESIIKEIESQLLS--G--------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKV 226 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~--~--------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 226 (664)
...+++|.+..+.++.+.... . ..-.+-|.|+|++|+|||+||+.++......| +.+ +..+.....
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~---i~i-~g~~~~~~~ 104 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPF---ITA-SGSDFVEMF 104 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCE---EEE-EGGGGTSSC
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEE-ehhHHHHhh
Confidence 567899999887777655421 0 01123489999999999999999998764221 111 111111111
Q ss_pred cchhHHhHHHHHHHhc-CceEEEEEecCCCH----------------HHHHHHhccCCCCC--CCcEEEEEeCCHHHHHh
Q 006018 227 GGLANIHLNFERRRLS-RMKVLIVFYDLTDL----------------KQIDLLIGRLDGFV--PGSRVIITTRDVQLLKN 287 (664)
Q Consensus 227 ~~l~~~~l~~~~~~L~-~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~--~gs~IliTtR~~~~~~~ 287 (664)
.+.....+..+.+... ..+.++++|+++.. ..+..++..+..+. .+..|+.||..++....
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 1111111222222111 23589999998531 12344444333222 23455556666654321
Q ss_pred h--cCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 288 H--RGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 288 ~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
. .....+..+.++..+.++-.+++..++
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~ 214 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHA 214 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTT
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHH
Confidence 1 111245688999999999899888765
No 231
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.72 E-value=0.00014 Score=72.11 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=82.4
Q ss_pred CCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
.-.++.|.++..++|.+.+.. +-.-.+-++|+|++|+||||||+.++...... .+.+. ..+....
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~---~i~i~-g~~l~~~ 83 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN---FISVK-GPELLNM 83 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEE-TTTTCSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC---EEEEE-cHHHHhh
Confidence 445677777777777654320 00111229999999999999999999875432 12222 1111111
Q ss_pred ccchhHHhHHHHHHHh-cCceEEEEEecCCCHH-------------HHHHHhccCCCC--CCCcEEEEEeCCHHHHHhh-
Q 006018 226 VGGLANIHLNFERRRL-SRMKVLIVFYDLTDLK-------------QIDLLIGRLDGF--VPGSRVIITTRDVQLLKNH- 288 (664)
Q Consensus 226 ~~~l~~~~l~~~~~~L-~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~--~~gs~IliTtR~~~~~~~~- 288 (664)
..+-....+..+.+.. ...+.++++|+++... ....+...+... ....-++.+|..+++....
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 0001111233333332 3457899999986420 112222222221 1233455677766553221
Q ss_pred -cCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 289 -RGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 289 -~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
.....+..+.++..+.++-.+++..+.
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 111267788999999999999998765
No 232
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=0.00016 Score=72.68 Aligned_cols=141 Identities=10% Similarity=0.044 Sum_probs=88.1
Q ss_pred eehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhh---ccCCcceeeccchhhhhcccchhHHhHHHHHH
Q 006018 163 GVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNIS---SHFEGSYFMQNIRDESEKVGGLANIHLNFERR 239 (664)
Q Consensus 163 Gr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~---~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 239 (664)
|-++.++.|...+..+. .+...++|++|+||||+|+.+++... ........+..- .....-.+++.+.+
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~------~~~~~id~ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE------GENIGIDDIRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS------SSCBCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCC------cCCCCHHHHHHHHH
Confidence 45667788888886554 67889999999999999999987521 111222222210 00111112223333
Q ss_pred Hh-----cCceEEEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCH-HHHHhhcCCccccEEEecCCCHHHHHHHH
Q 006018 240 RL-----SRMKVLIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDV-QLLKNHRGSRVGHVFEVKELSYNDSLTLF 311 (664)
Q Consensus 240 ~L-----~~~~~LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~-~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf 311 (664)
.. .+++-++|+|+++. .+..+.++..+....+.+.+|++|.++ .+..... .. .+++.+++.++..+.+
T Consensus 73 ~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~---SR-~~~f~~l~~~~i~~~L 148 (305)
T 2gno_A 73 FLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIK---SR-VFRVVVNVPKEFRDLV 148 (305)
T ss_dssp HHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHH---TT-SEEEECCCCHHHHHHH
T ss_pred HHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHH---ce-eEeCCCCCHHHHHHHH
Confidence 33 24467899999974 455677777666556677888777554 3333333 23 8999999999999999
Q ss_pred HHhh
Q 006018 312 SRNA 315 (664)
Q Consensus 312 ~~~a 315 (664)
...+
T Consensus 149 ~~~~ 152 (305)
T 2gno_A 149 KEKI 152 (305)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8765
No 233
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.66 E-value=0.00012 Score=74.16 Aligned_cols=50 Identities=18% Similarity=0.387 Sum_probs=38.7
Q ss_pred CCceeehhhHHHHHhhhcCC-------CCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 159 DQLVGVESIIKEIESQLLSG-------STEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 35789999988887777532 111357999999999999999999988643
No 234
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.66 E-value=0.00017 Score=71.13 Aligned_cols=50 Identities=32% Similarity=0.244 Sum_probs=34.7
Q ss_pred CCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 158 KDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...++|.+..+.++.+.+..-......|.|+|.+|+|||++|+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 34689999998888766543222235688999999999999999998743
No 235
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=2.6e-05 Score=76.49 Aligned_cols=94 Identities=23% Similarity=0.286 Sum_probs=66.0
Q ss_pred cccccccccccccc----cCCCCCCcEEeecCCCCCC--ccccccCCCCCCCEEeeeCCCCCCccccccCCCC--CCCEE
Q 006018 515 LDLKETAIEELPSS----IGNLSRLVDLDLTNCSGLK--SVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLE--SLEYL 586 (664)
Q Consensus 515 L~l~~~~i~~lp~~----~~~l~~L~~L~l~~~~~l~--~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~--~L~~L 586 (664)
++++.|....++.. ..++++|+.|+|++|.... .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 55566654444322 2468899999999876544 4556667899999999999986543 2333333 99999
Q ss_pred EccCCCCcc-cc-------ccccCCCCCCEEe
Q 006018 587 NLAEKDFEK-IP-------SSMKQLSKLSDLR 610 (664)
Q Consensus 587 ~l~~n~i~~-lp-------~~i~~L~~L~~L~ 610 (664)
+|++|.+.. +| ..+..+++|+.||
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 999999973 44 2357788888887
No 236
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.57 E-value=0.00023 Score=63.34 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
...++|+|..|+|||||++.++.....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999999988654
No 237
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.50 E-value=0.00029 Score=80.51 Aligned_cols=147 Identities=12% Similarity=0.210 Sum_probs=81.1
Q ss_pred CCceeehhhHHHHHhhhcCCC-------CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhH
Q 006018 159 DQLVGVESIIKEIESQLLSGS-------TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLAN 231 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~ 231 (664)
..++|.+..++.+...+.... .....+.++|++|+|||++|+.+++.....-...+.+ +..+........ .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i-~~s~~~~~~~~~-~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRI-DMSEYMEKHSTS-G 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE-EGGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE-echhcccccccc-c
Confidence 468999998888877664211 1233699999999999999999998863321111111 122221111100 0
Q ss_pred HhHHHHHHHhc-CceEEEEEecCCC--HHHHHHHhccCCC-----------CCCCcEEEEEeCC----------------
Q 006018 232 IHLNFERRRLS-RMKVLIVFYDLTD--LKQIDLLIGRLDG-----------FVPGSRVIITTRD---------------- 281 (664)
Q Consensus 232 ~~l~~~~~~L~-~~~~LlVlDdv~~--~~~~~~l~~~~~~-----------~~~gs~IliTtR~---------------- 281 (664)
..+.+.++ ....+|+||+++. .+....+...+.. .....+||+||..
T Consensus 569 ---~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f 645 (758)
T 3pxi_A 569 ---GQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAF 645 (758)
T ss_dssp -----CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHS
T ss_pred ---chhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhC
Confidence 01111111 2345899999974 3334444433221 1235688888872
Q ss_pred -HHHHHhhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 282 -VQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 282 -~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
+++..+ .+.++.+++++.++-.+++....
T Consensus 646 ~p~l~~R-----l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 646 RPEFINR-----IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp CHHHHTT-----SSEEEECC--CHHHHHHHHHHHH
T ss_pred CHHHHhh-----CCeEEecCCCCHHHHHHHHHHHH
Confidence 111111 23588899999988888776543
No 238
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.49 E-value=0.00032 Score=80.32 Aligned_cols=154 Identities=18% Similarity=0.234 Sum_probs=87.5
Q ss_pred CCCCceeehhhHHHHHhhhcC-----------CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLS-----------GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~-----------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
.-.+++|.+..+++|.+++.. +-.....|.|+|++|+||||||+.++......| +.+ +..+....
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v-~~~~l~~~ 277 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLI-NGPEIMSK 277 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEE-EHHHHSSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEE-EchHhhhh
Confidence 446789999999999887742 123345799999999999999999988764433 111 12222111
Q ss_pred ccchhHHhHH-HHHHHhcCceEEEEEecCCCH----------------HHHHHHhccCCCCCCCcEEEEEeCCHHHHHh-
Q 006018 226 VGGLANIHLN-FERRRLSRMKVLIVFYDLTDL----------------KQIDLLIGRLDGFVPGSRVIITTRDVQLLKN- 287 (664)
Q Consensus 226 ~~~l~~~~l~-~~~~~L~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~~gs~IliTtR~~~~~~~- 287 (664)
..+-....+. .+.......+.++++|+++.. .++-.+...... ..+..+|.||........
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v~vI~atn~~~~ld~a 356 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCCEEEEECSCTTTSCTT
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cccEEEecccCCchhcCHH
Confidence 1111111222 222333446789999998421 112222222221 234456666655432211
Q ss_pred hcC-CccccEEEecCCCHHHHHHHHHHhh
Q 006018 288 HRG-SRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 288 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
... ......+.+...+.++-.+++..++
T Consensus 357 l~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp TTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred HhcccccccccccCCCCHHHHHHHHHHHH
Confidence 110 0244567888889999999988765
No 239
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.49 E-value=0.00059 Score=68.63 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=37.8
Q ss_pred CCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 159 DQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
+.++|++..+.++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999998887775432334568899999999999999998863
No 240
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.39 E-value=0.0028 Score=64.46 Aligned_cols=144 Identities=13% Similarity=0.162 Sum_probs=80.8
Q ss_pred CCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccc--hhhhhccc-chhHHhH
Q 006018 158 KDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNI--RDESEKVG-GLANIHL 234 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~--~~~~~~~~-~l~~~~l 234 (664)
...++|++..++.+...+..+ ..+.++|++|+|||+||+.+++.....|....+.... .+...... .......
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~~ 101 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGNF 101 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTEE
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCce
Confidence 356899999999888777543 3688999999999999999998765443222221100 00000000 0000000
Q ss_pred HHHHHHhcCc---eEEEEEecCCCH--HHHHHHhccCCC-----------CCCCcEEEEEeCC----------HHHHHhh
Q 006018 235 NFERRRLSRM---KVLIVFYDLTDL--KQIDLLIGRLDG-----------FVPGSRVIITTRD----------VQLLKNH 288 (664)
Q Consensus 235 ~~~~~~L~~~---~~LlVlDdv~~~--~~~~~l~~~~~~-----------~~~gs~IliTtR~----------~~~~~~~ 288 (664)
..... ..++++|+++.. .....+...+.. ......|+.|+.. +.+..+
T Consensus 102 -----~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~R- 175 (331)
T 2r44_A 102 -----EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDR- 175 (331)
T ss_dssp -----EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTT-
T ss_pred -----EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhh-
Confidence 00001 258999998643 333333322211 1234455656652 122221
Q ss_pred cCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 289 RGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 289 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
....+.++.++.++-.+++...+
T Consensus 176 ----f~~~i~i~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 176 ----FMMKIHLTYLDKESELEVMRRVS 198 (331)
T ss_dssp ----SSEEEECCCCCHHHHHHHHHHHH
T ss_pred ----eeEEEEcCCCCHHHHHHHHHhcc
Confidence 23358999999999999998876
No 241
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.36 E-value=0.00033 Score=57.99 Aligned_cols=72 Identities=11% Similarity=-0.006 Sum_probs=52.0
Q ss_pred CcceEEEeccccccccchHHHHHHHHhhCCCceeecCCcCCCCcccHHHHHhhhcCcEEEEEecCCcccchhhHHHHHHH
Q 006018 14 PKHDVFLSFRGKDVRHNFVSHLNAALCREKIETFIDDKLNRGNEISPSLSSAIEGSKISIVIFSEGYASSRWCLNELVKI 93 (664)
Q Consensus 14 ~~~dvFis~~~~d~~~~f~~~l~~~l~~~g~~~~~d~~~~~g~~~~~~~~~~i~~s~~~i~v~S~~y~~s~wc~~El~~~ 93 (664)
.+|.+||||+.+|. .+.|...|.+.|+..- | +.|+.|.++|++.++....|+||..|+..+
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~~-~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A 63 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEWR-P--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA 63 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCEE-E--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCeee-c--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence 47999999999983 3444444444455322 2 669999999999999999999999998765
Q ss_pred HHhhhhcCceEEEEE
Q 006018 94 LESKNKYGQIVVPVF 108 (664)
Q Consensus 94 ~~~~~~~~~~v~pv~ 108 (664)
. +.+..++-|.
T Consensus 64 ~----~~gkpIigV~ 74 (111)
T 1eiw_A 64 R----KSSKPIITVR 74 (111)
T ss_dssp T----TTTCCEEEEC
T ss_pred H----HcCCCEEEEE
Confidence 5 3344455553
No 242
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.25 E-value=0.0005 Score=73.49 Aligned_cols=95 Identities=20% Similarity=0.050 Sum_probs=56.0
Q ss_pred CCCCceeehhhHHHHHhhh---cCCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhcccchhHHh
Q 006018 157 NKDQLVGVESIIKEIESQL---LSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVGGLANIH 233 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L---~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~~ 233 (664)
....++|.+..++.+..++ ..+....+-+.++|++|+|||+||+.+++.....+... ..+..+......+-.+.
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~--~~~~~~~~~~~~~~~~~- 111 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFC--PMVGSEVYSTEIKKTEV- 111 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEE--EEEGGGGCCSSSCHHHH-
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEE--EEeHHHHHHHhhhhhHH-
Confidence 3478999999877655443 33333345789999999999999999999875432111 11122222111111111
Q ss_pred HHH-HHHH---hcCceEEEEEecCC
Q 006018 234 LNF-ERRR---LSRMKVLIVFYDLT 254 (664)
Q Consensus 234 l~~-~~~~---L~~~~~LlVlDdv~ 254 (664)
+.. +.+. -...+.+|++|+++
T Consensus 112 ~~~~f~~a~~~~~~~~~il~iDEid 136 (456)
T 2c9o_A 112 LMENFRRAIGLRIKETKEVYEGEVT 136 (456)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhhhcCCcEEEEechh
Confidence 222 2222 23457899999985
No 243
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.21 E-value=0.0027 Score=65.90 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=36.2
Q ss_pred CceeehhhHHHHHhhhc----C------------------------CCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 160 QLVGVESIIKEIESQLL----S------------------------GSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~----~------------------------~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.++|.+..++.|...+. . .......+.++|++|+|||++|+.+++...
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899888888876661 0 011234688999999999999999998864
No 244
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.19 E-value=0.00021 Score=64.86 Aligned_cols=91 Identities=13% Similarity=0.182 Sum_probs=60.7
Q ss_pred cccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCC-Cccc-cccccCC----CCCCEEeecCCCCCCcCCC
Q 006018 549 VSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKD-FEKI-PSSMKQL----SKLSDLRLQNCKRLQSLPE 622 (664)
Q Consensus 549 lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~-i~~l-p~~i~~L----~~L~~L~L~~~~~l~~lp~ 622 (664)
+|.....-..|+.|++++|.+...--..+.++++|++|+|++|. ++.- -..+..+ ++|++|+|++|..++.---
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 45333334579999999999766655678899999999999884 6521 1234444 3799999999986553110
Q ss_pred CCCCCEEeeeCCCCCccccCCCc
Q 006018 623 LPCGSSIHARHCTSLKTLSNSST 645 (664)
Q Consensus 623 l~~~~~l~~~~~~~L~~L~ls~N 645 (664)
. .+..|++|+.|+++++
T Consensus 133 ~------~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 133 I------ALHHFRNLKYLFLSDL 149 (176)
T ss_dssp H------HGGGCTTCCEEEEESC
T ss_pred H------HHhcCCCCCEEECCCC
Confidence 0 2344666666666665
No 245
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.11 E-value=0.0031 Score=72.06 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=37.7
Q ss_pred CCceeehhhHHHHHhhhcCC-------CCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 159 DQLVGVESIIKEIESQLLSG-------STEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..++|.+..++.+...+... ......+.++|++|+|||++|+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 45889999888887666421 12234789999999999999999998863
No 246
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.06 E-value=0.0023 Score=69.82 Aligned_cols=149 Identities=17% Similarity=0.246 Sum_probs=77.2
Q ss_pred CceeehhhHHHHHhhhcC----CCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhccc------ch
Q 006018 160 QLVGVESIIKEIESQLLS----GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEKVG------GL 229 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~----~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~------~l 229 (664)
+++|.+...+.+...+.. .......+.++|++|+||||||+.++......|-...+ ..........+ +.
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~-~~~~~~~~~~g~~~~~ig~ 160 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISL-GGVRDESEIRGHRRTYVGA 160 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECC-CC-----------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEe-cccchhhhhhhHHHHHhcc
Confidence 367777766666443321 11134589999999999999999999886544322211 11111000000 00
Q ss_pred hHHhHHHHHHHhcCceEEEEEecCCCHHH------HHHHhccCCCCC---------------CCcEEEEEeCCHH-----
Q 006018 230 ANIHLNFERRRLSRMKVLIVFYDLTDLKQ------IDLLIGRLDGFV---------------PGSRVIITTRDVQ----- 283 (664)
Q Consensus 230 ~~~~l~~~~~~L~~~~~LlVlDdv~~~~~------~~~l~~~~~~~~---------------~gs~IliTtR~~~----- 283 (664)
....+...........-+++||+++.... ...++..+.... ....||.||....
T Consensus 161 ~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~a 240 (543)
T 3m6a_A 161 MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGP 240 (543)
T ss_dssp ---CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHH
T ss_pred CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHH
Confidence 01111112222222344888999975321 233443332111 2345666665432
Q ss_pred HHHhhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 284 LLKNHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 284 ~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
+..+ ...+.++.++.++-.+++..+.
T Consensus 241 L~~R------~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 241 LRDR------MEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HHHH------EEEEECCCCCHHHHHHHHHHTH
T ss_pred HHhh------cceeeeCCCCHHHHHHHHHHHH
Confidence 2222 2468999999999999887764
No 247
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.98 E-value=0.0017 Score=73.20 Aligned_cols=158 Identities=17% Similarity=0.244 Sum_probs=85.2
Q ss_pred CCCCCCCceeehhhHHHHHhhhcCC-----------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhh
Q 006018 154 PSDNKDQLVGVESIIKEIESQLLSG-----------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDE 222 (664)
Q Consensus 154 p~~~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~ 222 (664)
|...-..+.|.++..++|.+.+... ....+-|.++|++|.|||.||+++++.....| +.....+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f----~~v~~~~l 547 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF----ISIKGPEL 547 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE----EECCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce----EEeccchh
Confidence 3334456778888888887765421 12245588999999999999999999865433 22223333
Q ss_pred hhcccchhHHhHHHHHHHh-cCceEEEEEecCCCH---------H-------HHHHHhccCCCCCCCcE-EEE-EeCCHH
Q 006018 223 SEKVGGLANIHLNFERRRL-SRMKVLIVFYDLTDL---------K-------QIDLLIGRLDGFVPGSR-VII-TTRDVQ 283 (664)
Q Consensus 223 ~~~~~~l~~~~l~~~~~~L-~~~~~LlVlDdv~~~---------~-------~~~~l~~~~~~~~~gs~-Ili-TtR~~~ 283 (664)
.....+-.+..+..+.+.- +..+++|++|+++.. + ...+++..+........ ++| ||-.++
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~ 627 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD 627 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSS
T ss_pred hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCch
Confidence 3333333333344444433 456899999998631 0 13344444433332222 333 444332
Q ss_pred HHH--hhcCCccccEEEecCCCHHHHHHHHHHhh
Q 006018 284 LLK--NHRGSRVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 284 ~~~--~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
... .......+..+.++..+.++-.++|..+.
T Consensus 628 ~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 628 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 211 11111256788888777777778887665
No 248
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.95 E-value=0.00058 Score=68.77 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=37.3
Q ss_pred CCCceee----hhhHHHHHhhhcCCCC-cceEEEEecCCCCChHHHHHHHHHHhh-ccCCcceee
Q 006018 158 KDQLVGV----ESIIKEIESQLLSGST-EFNTVGIWGIGGIGKTTIASAIYSNIS-SHFEGSYFM 216 (664)
Q Consensus 158 ~~~~vGr----~~~~~~l~~~L~~~~~-~~~~v~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~ 216 (664)
...|++. ...++.+.+++..-.. ....+.|+|++|+|||+||.++++... ..-..+.++
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3455543 3344445556643221 246789999999999999999999876 443333333
No 249
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.94 E-value=0.0011 Score=66.03 Aligned_cols=72 Identities=17% Similarity=0.141 Sum_probs=42.2
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceeecc-chhhhhcccchhHHhHHHHHHHhcCceEEEEEecCCCH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQN-IRDESEKVGGLANIHLNFERRRLSRMKVLIVFYDLTDL 256 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~L~~~~~LlVlDdv~~~ 256 (664)
..+++.|+|++|+|||+||.+++.. ... .+.|+.. ..+.......-.+..++.+.+.+.+.+ +||+|++...
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~--~G~-~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA--LGG-KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNV 194 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH--HHT-TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh--CCC-CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEeccccc
Confidence 3457889999999999999999886 212 2334432 111111000011122445556666666 9999998653
No 250
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.94 E-value=0.0086 Score=54.74 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998764
No 251
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.79 E-value=0.0024 Score=58.83 Aligned_cols=101 Identities=23% Similarity=0.210 Sum_probs=54.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccch--------hhhhccc---------------chh------HHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIR--------DESEKVG---------------GLA------NIH 233 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~--------~~~~~~~---------------~l~------~~~ 233 (664)
..|.|++-.|.||||+|...+-+...+=-.+.++.-+. ....... ... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 46777777779999999999888444333333331111 1111110 000 011
Q ss_pred HHHHHHHhcCce-EEEEEecCCCHH-----HHHHHhccCCCCCCCcEEEEEeCCHH
Q 006018 234 LNFERRRLSRMK-VLIVFYDLTDLK-----QIDLLIGRLDGFVPGSRVIITTRDVQ 283 (664)
Q Consensus 234 l~~~~~~L~~~~-~LlVlDdv~~~~-----~~~~l~~~~~~~~~gs~IliTtR~~~ 283 (664)
++..++.+.+.+ =|||||++.... ..+.+...+........||+|+|+..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 446666665544 599999973321 12223222323345678999999753
No 252
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.76 E-value=0.012 Score=60.83 Aligned_cols=105 Identities=18% Similarity=0.295 Sum_probs=52.8
Q ss_pred cCCCCCCcEEeecCCCCCCccc-cccCCCCCCCEEeeeCCCCCCccc-cccCCCCCCCEEEccCCCCcccc-ccccCCCC
Q 006018 529 IGNLSRLVDLDLTNCSGLKSVS-SRLCNLKSLRRLNLSGCLKLEKLP-EEIGNLESLEYLNLAEKDFEKIP-SSMKQLSK 605 (664)
Q Consensus 529 ~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~l~~n~i~~lp-~~i~~L~~ 605 (664)
+..+.+|+.+.+..+ +..++ ..+.+..+|+.+.+..+ +..++ ..+.++.+|+.+.+.++.++.++ ..|.++++
T Consensus 236 f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 345555666555532 23332 33445556666655432 22222 34555666666666665565554 34556666
Q ss_pred CCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCc
Q 006018 606 LSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSST 645 (664)
Q Consensus 606 L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N 645 (664)
|+.+.|..+ ++.++.. .+.+|++|+.+.+..+
T Consensus 312 L~~i~lp~~--l~~I~~~------aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 312 LSSVTLPTA--LKTIQVY------AFKNCKALSTISYPKS 343 (379)
T ss_dssp CCEEECCTT--CCEECTT------TTTTCTTCCCCCCCTT
T ss_pred CCEEEcCcc--ccEEHHH------HhhCCCCCCEEEECCc
Confidence 666666432 3333332 3555666666655443
No 253
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.69 E-value=0.0078 Score=58.34 Aligned_cols=39 Identities=26% Similarity=0.220 Sum_probs=29.8
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..-+..++.........|.++|++|.|||.+|.++++.+
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 344667776542335679999999999999999999863
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.63 E-value=0.0069 Score=70.02 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=37.0
Q ss_pred CceeehhhHHHHHhhhcCC-------CCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 160 QLVGVESIIKEIESQLLSG-------STEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 160 ~~vGr~~~~~~l~~~L~~~-------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.++|.+..++.+...+... ......+.|+|++|+|||++|+.+++...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999888887766421 11235789999999999999999998753
No 255
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.42 E-value=0.00079 Score=77.05 Aligned_cols=155 Identities=15% Similarity=0.203 Sum_probs=83.0
Q ss_pred CCCCceeehhhHHHHHhhhcCC-----------CCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhhc
Q 006018 157 NKDQLVGVESIIKEIESQLLSG-----------STEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESEK 225 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~-----------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 225 (664)
...+++|.+...++|.+.+... -.....+.++|++|+|||+||+.++......|-.. +..+....
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v----~~~~l~~~ 550 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI----KGPELLTM 550 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCC----CCSSSTTC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEE----echHhhhh
Confidence 4456789998888888776421 11235688999999999999999999875443211 11111111
Q ss_pred ccchhHHhHHHHHHHh-cCceEEEEEecCCCH----------------HHHHHHhccCCCCC--CCcEEEEEeCCHHHHH
Q 006018 226 VGGLANIHLNFERRRL-SRMKVLIVFYDLTDL----------------KQIDLLIGRLDGFV--PGSRVIITTRDVQLLK 286 (664)
Q Consensus 226 ~~~l~~~~l~~~~~~L-~~~~~LlVlDdv~~~----------------~~~~~l~~~~~~~~--~gs~IliTtR~~~~~~ 286 (664)
..+-.+..+..+.+.. ...+.++++|+++.. .....++..+.... .+..||.||...+...
T Consensus 551 ~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld 630 (806)
T 1ypw_A 551 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGS
T ss_pred hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCC
Confidence 1111111122222222 224578999998542 12345555554322 2334455655332221
Q ss_pred hhcCC--ccccEEEecCCCHHHHHHHHHHhh
Q 006018 287 NHRGS--RVGHVFEVKELSYNDSLTLFSRNA 315 (664)
Q Consensus 287 ~~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a 315 (664)
..-.. .....+.++..+.++-.+++..+.
T Consensus 631 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred HHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 11100 134567777778888888877665
No 256
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.07 E-value=0.0046 Score=63.85 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=36.6
Q ss_pred ceeehhhHHHHHhhhc-------------CCCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 161 LVGVESIIKEIESQLL-------------SGSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 161 ~vGr~~~~~~l~~~L~-------------~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
++|.+..++.+...+. ........|.++|++|+|||++|+.+++...
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6899988888877772 1111345689999999999999999998863
No 257
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.05 E-value=0.038 Score=57.51 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=70.2
Q ss_pred ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCcccc-ccccCCCCC
Q 006018 528 SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIP-SSMKQLSKL 606 (664)
Q Consensus 528 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp-~~i~~L~~L 606 (664)
.+..+..|+.+.+.... .....+....+|+.+.+..+ ....-...|.++.+|+.+++..+ ++.++ ..|.++++|
T Consensus 271 ~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L 345 (394)
T 4fs7_A 271 LFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL 345 (394)
T ss_dssp TTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred ccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence 34455556555554321 11234667788888888653 22223456788889999998644 77775 467888999
Q ss_pred CEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCc
Q 006018 607 SDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSST 645 (664)
Q Consensus 607 ~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N 645 (664)
+.+.+..+ +..++.. .+.+|++|+.++++.+
T Consensus 346 ~~i~lp~~--l~~I~~~------aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 346 SNINFPLS--LRKIGAN------AFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECCCTT--CCEECTT------TBTTCTTCCEEEEEGG
T ss_pred CEEEECcc--ccEehHH------HhhCCCCCCEEEECCC
Confidence 99988764 5555553 6889999999998765
No 258
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.03 E-value=0.003 Score=58.23 Aligned_cols=96 Identities=15% Similarity=0.020 Sum_probs=48.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhh-------hhccc----chhHHhHHHHHHHhcCceEEEEEe
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDE-------SEKVG----GLANIHLNFERRRLSRMKVLIVFY 251 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~-------~~~~~----~l~~~~l~~~~~~L~~~~~LlVlD 251 (664)
.++.|+|+.|+||||++..++.+...+-..+.++....+. ....+ .........+.+.+.++.-+|++|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviID 83 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFID 83 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEE
Confidence 4788999999999999988777653321122222111000 00000 000001112223333456699999
Q ss_pred cCCCH--HHHHHHhccCCCCCCCcEEEEEeCC
Q 006018 252 DLTDL--KQIDLLIGRLDGFVPGSRVIITTRD 281 (664)
Q Consensus 252 dv~~~--~~~~~l~~~~~~~~~gs~IliTtR~ 281 (664)
.+... +.++.+....+ .|..|++|.+.
T Consensus 84 E~Q~~~~~~~~~l~~l~~---~~~~Vi~~Gl~ 112 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLD---RGIDVFCAGLD 112 (184)
T ss_dssp CGGGSCTTHHHHHHHHHH---TTCEEEEEEES
T ss_pred CcccCCHHHHHHHHHHHH---CCCCEEEEeec
Confidence 98543 33343332222 26789998874
No 259
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.97 E-value=0.034 Score=57.88 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=42.4
Q ss_pred cCCCCCCcEEeecCCCCCCccc-cccCCCCCCCEEeeeCCCCCCcc-ccccCCCCCCCEEEccCCCCcccc-ccccCCCC
Q 006018 529 IGNLSRLVDLDLTNCSGLKSVS-SRLCNLKSLRRLNLSGCLKLEKL-PEEIGNLESLEYLNLAEKDFEKIP-SSMKQLSK 605 (664)
Q Consensus 529 ~~~l~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~L~~~~~~~~~-p~~l~~l~~L~~L~l~~n~i~~lp-~~i~~L~~ 605 (664)
+..+.+|+.+.+..+ +..++ ..|.++.+|+.++|..+ +..+ ...|.++.+|+.+++..+ ++.++ ..|.++++
T Consensus 293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred ccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 445566666666531 33333 34555666666666432 2222 345556666666666544 55553 34566666
Q ss_pred CCEEeecC
Q 006018 606 LSDLRLQN 613 (664)
Q Consensus 606 L~~L~L~~ 613 (664)
|+.+++..
T Consensus 368 L~~i~lp~ 375 (394)
T 4fs7_A 368 LKKVELPK 375 (394)
T ss_dssp CCEEEEEG
T ss_pred CCEEEECC
Confidence 66666654
No 260
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.96 E-value=0.047 Score=55.60 Aligned_cols=155 Identities=10% Similarity=-0.040 Sum_probs=96.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhh-ccCCcceeeccchhhhhcccchhHHhHHHH-HHHhcCceEEEEEecCCC---
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNIS-SHFEGSYFMQNIRDESEKVGGLANIHLNFE-RRRLSRMKVLIVFYDLTD--- 255 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~L~~~~~LlVlDdv~~--- 255 (664)
-.++..++|..|.||++.|..+.+.+. ..|+....+. +.. .....+. .+.. ..-+.+.+-++|+|+++.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~----~~~~~~l-~~~~~~~plf~~~kvvii~~~~~kl~ 90 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-IDP----NTDWNAI-FSLCQAMSLFASRQTLLLLLPENGPN 90 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCT----TCCHHHH-HHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ecC----CCCHHHH-HHHhcCcCCccCCeEEEEECCCCCCC
Confidence 356889999999999999999988754 3343211111 111 0111111 1111 122456677889999865
Q ss_pred HHHHHHHhccCCCCCCCcEEEEEeCC-------HHHHHhhcCCccccEEEecCCCHHHHHHHHHHhhhCCCCCCccHHHH
Q 006018 256 LKQIDLLIGRLDGFVPGSRVIITTRD-------VQLLKNHRGSRVGHVFEVKELSYNDSLTLFSRNAFGQNHPAAGFLEL 328 (664)
Q Consensus 256 ~~~~~~l~~~~~~~~~gs~IliTtR~-------~~~~~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 328 (664)
.+..+.+...+....+++.+|+++-+ ..+...... ....++..+++.++..+.+...+-... ..-..+.
T Consensus 91 ~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~~~~~~~l~~~~l~~~l~~~~~~~g--~~i~~~a 166 (343)
T 1jr3_D 91 AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQVTCQTPEQAQLPRWVAARAKQLN--LELDDAA 166 (343)
T ss_dssp TTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCEEEEECCCCTTHHHHHHHHHHHHTT--CEECHHH
T ss_pred hHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHh--CceEEEeeCCCHHHHHHHHHHHHHHcC--CCCCHHH
Confidence 35567777766655667887777643 234443332 456899999999999988877763221 1223466
Q ss_pred HHHHHHHhcCCchhHHH
Q 006018 329 SNIVIKYANGVPLALQV 345 (664)
Q Consensus 329 ~~~i~~~~~glPLal~~ 345 (664)
+..+++.++|...++..
T Consensus 167 ~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 167 NQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHhchHHHHHHH
Confidence 77888888988876654
No 261
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.95 E-value=0.014 Score=53.01 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=18.2
Q ss_pred ceEEEEecCCCCChHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASA 201 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~ 201 (664)
..+++|+|+.|+|||||++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 35899999999999999995
No 262
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.95 E-value=0.0064 Score=57.21 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=29.8
Q ss_pred hHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 167 IIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 167 ~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+++|.+.+........+|+|.|..|.|||||++.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34445444433234457999999999999999999988765
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.82 E-value=0.0047 Score=56.37 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|.|.|++|+||||+|+.++++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998754
No 264
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.73 E-value=0.019 Score=58.72 Aligned_cols=100 Identities=17% Similarity=0.121 Sum_probs=63.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcce-eeccchhhhhc--------cc-chhHHh-HHHHHHHhcCceEEEEEe
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSY-FMQNIRDESEK--------VG-GLANIH-LNFERRRLSRMKVLIVFY 251 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-~~~~~~~~~~~--------~~-~l~~~~-l~~~~~~L~~~~~LlVlD 251 (664)
.+++|.|+.|.|||||.+.+...+.......+ .+.+..+.... .. ...... .+.+...|...+=+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 48999999999999999998877554322222 22221111000 00 000011 247788889999999999
Q ss_pred cCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHHH
Q 006018 252 DLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQLL 285 (664)
Q Consensus 252 dv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~~ 285 (664)
.+.+.+.++.+.... ..|..||+||-..+..
T Consensus 204 Ep~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 204 EMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred CCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 999887776655442 2466788888866554
No 265
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.70 E-value=0.013 Score=54.68 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=32.9
Q ss_pred ehhhHHHHHhhhcCC-CCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 164 VESIIKEIESQLLSG-STEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 164 r~~~~~~l~~~L~~~-~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
|++.++++.+.+... .....+|+|.|..|+||||+++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455666666665432 23457899999999999999999987654
No 266
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=95.66 E-value=0.044 Score=48.71 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=67.2
Q ss_pred cceEEEec--------------cccccccchHHHHHHHHhhCCCceeecC-CcC----C----CCcccHHHHHhhhcCcE
Q 006018 15 KHDVFLSF--------------RGKDVRHNFVSHLNAALCREKIETFIDD-KLN----R----GNEISPSLSSAIEGSKI 71 (664)
Q Consensus 15 ~~dvFis~--------------~~~d~~~~f~~~l~~~l~~~g~~~~~d~-~~~----~----g~~~~~~~~~~i~~s~~ 71 (664)
+=-+|+.| +.+|. .....|.+.-....+..|.|. +.. - -+.|.+.+++.|..|+.
T Consensus 5 rn~~YvaF~~~~~~~~~~~~~~a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~ 82 (189)
T 3hyn_A 5 QNANYSAFYVSEPFSESNLGANSTHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKN 82 (189)
T ss_dssp CCEEEEECCCCSSCCTTSTTGGGSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEE
T ss_pred ccCcEEEEeccCcccccccCCCccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCc
Confidence 44578898 45553 346777777777677778885 442 1 34588889999999999
Q ss_pred EEEEecCCcccchhhHHHHHHHHHhhhhcCceEEEEEee
Q 006018 72 SIVIFSEGYASSRWCLNELVKILESKNKYGQIVVPVFYL 110 (664)
Q Consensus 72 ~i~v~S~~y~~s~wc~~El~~~~~~~~~~~~~v~pv~~~ 110 (664)
+|+++|++...|.|-.+|+..+++ +.+..|+-|..+
T Consensus 83 vIllIs~~T~~s~~v~wEIe~Ai~---~~~~PII~Vy~~ 118 (189)
T 3hyn_A 83 IILFLSSITANSRALREEMNYGIG---TKGLPVIVIYPD 118 (189)
T ss_dssp EEEECCTTCCCCHHHHHHHHHHTT---TTCCCEEEEETT
T ss_pred EEEEEecCccccchhHHHHHHHHH---hcCCcEEEEECC
Confidence 999999999999999999887772 334557777543
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.62 E-value=0.0066 Score=54.90 Aligned_cols=25 Identities=16% Similarity=0.140 Sum_probs=22.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|+|.|++|+||||+|+.++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999988754
No 268
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.52 E-value=0.027 Score=53.26 Aligned_cols=98 Identities=16% Similarity=0.004 Sum_probs=53.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec---cch---hhhhccc-chhH------Hh-HHHHHHHhcCc-eE
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ---NIR---DESEKVG-GLAN------IH-LNFERRRLSRM-KV 246 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~---~~~---~~~~~~~-~l~~------~~-l~~~~~~L~~~-~~ 246 (664)
..++.|+|..|.||||++..++++...+-..+.++. +-+ ......+ .... .+ .+.+.+.+.+. .-
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 468899999999999999999988765543333332 111 1111111 0000 01 22223223223 45
Q ss_pred EEEEecCCC--HHHHHHHhccCCCCCCCcEEEEEeCCH
Q 006018 247 LIVFYDLTD--LKQIDLLIGRLDGFVPGSRVIITTRDV 282 (664)
Q Consensus 247 LlVlDdv~~--~~~~~~l~~~~~~~~~gs~IliTtR~~ 282 (664)
+||+|.+.. .++++.+....+ .|..||+|.++.
T Consensus 92 vViIDEaQ~l~~~~ve~l~~L~~---~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 92 VIGIDEVQFFDDRICEVANILAE---NGFVVIISGLDK 126 (223)
T ss_dssp EEEECSGGGSCTHHHHHHHHHHH---TTCEEEEECCSB
T ss_pred EEEEecCccCcHHHHHHHHHHHh---CCCeEEEEeccc
Confidence 999999853 244444432211 267899999843
No 269
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.51 E-value=0.015 Score=57.71 Aligned_cols=30 Identities=20% Similarity=0.174 Sum_probs=25.4
Q ss_pred CCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 179 STEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 179 ~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.....+|+|.|..|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345679999999999999999998887654
No 270
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.46 E-value=0.0082 Score=55.12 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+.|.|.|++|+||||+|+.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999875
No 271
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.46 E-value=0.0084 Score=55.93 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=23.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..+|+|.|++|+||||+|+.++....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998763
No 272
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.45 E-value=0.026 Score=54.99 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=59.2
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceeecc--chhhhhc--------ccchhHHh-HHHHHHHhcCceEEEE
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQN--IRDESEK--------VGGLANIH-LNFERRRLSRMKVLIV 249 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~--~~~~~~~--------~~~l~~~~-l~~~~~~L~~~~~LlV 249 (664)
...+++|+|+.|.|||||++.+...+...+.+.+++.. +...... ..++.... ...+...|...+-+++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~ill 103 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 103 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEE
Confidence 34689999999999999999988765443333333311 1000000 00001011 2355666666778899
Q ss_pred EecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHHH
Q 006018 250 FYDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQL 284 (664)
Q Consensus 250 lDdv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~~ 284 (664)
+|...+.+....+.... ..|.-|++||-+...
T Consensus 104 lDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 104 VGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp ESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred eCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 99997766655444332 246678888876543
No 273
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.43 E-value=0.014 Score=54.56 Aligned_cols=74 Identities=19% Similarity=0.245 Sum_probs=42.9
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhccCCcceeec---cchhhhhccc-------------chhHHh--HHHHHHHhcCce
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ---NIRDESEKVG-------------GLANIH--LNFERRRLSRMK 245 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~---~~~~~~~~~~-------------~l~~~~--l~~~~~~L~~~~ 245 (664)
+|.|.|++|+||||.|+.+++++. | ..+. -+++...... .+...+ .+.+.+++....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g--~---~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~ 76 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG--F---VHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHG 76 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC--C---EEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC--C---eEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCC
Confidence 477999999999999999998742 1 1121 1222111111 111111 346677776655
Q ss_pred EEEEEecC-CCHHHHHHHh
Q 006018 246 VLIVFYDL-TDLKQIDLLI 263 (664)
Q Consensus 246 ~LlVlDdv-~~~~~~~~l~ 263 (664)
. +|||.. .+..|.+.+.
T Consensus 77 ~-~ilDGfPRt~~Qa~~l~ 94 (206)
T 3sr0_A 77 N-VIFDGFPRTVKQAEALD 94 (206)
T ss_dssp C-EEEESCCCSHHHHHHHH
T ss_pred c-eEecCCchhHHHHHHHH
Confidence 4 688998 4566665553
No 274
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.34 E-value=0.033 Score=56.66 Aligned_cols=51 Identities=22% Similarity=0.128 Sum_probs=35.4
Q ss_pred hHHHHHhhhc-CCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 167 IIKEIESQLL-SGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 167 ~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
-..+|...|. .+-..-.++.|.|++|+||||||..++......-..++|+.
T Consensus 45 G~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 45 GSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp SCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3455666664 23234579999999999999999999987654333445553
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.34 E-value=0.0087 Score=54.18 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+|+|.|++|+||||+|+.+ .+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 44
No 276
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.26 E-value=0.0079 Score=64.41 Aligned_cols=44 Identities=27% Similarity=0.243 Sum_probs=37.2
Q ss_pred CCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 159 DQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..++|++..++.+...+..+ ..|.|+|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHH
Confidence 45899999999888777543 368999999999999999999875
No 277
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.25 E-value=0.0083 Score=55.11 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=23.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCC
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFE 211 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~ 211 (664)
|.|.|+|++|+|||||++++..+....|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 46889999999999999999887654443
No 278
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.22 E-value=0.029 Score=48.18 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=15.8
Q ss_pred CCCEEEccCCCCcccccc-ccCCCCCCEEeecCC
Q 006018 582 SLEYLNLAEKDFEKIPSS-MKQLSKLSDLRLQNC 614 (664)
Q Consensus 582 ~L~~L~l~~n~i~~lp~~-i~~L~~L~~L~L~~~ 614 (664)
+|++|+|++|.|+.+|.. |..+++|+.|+|++|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 345555555555544432 344445555555544
No 279
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.22 E-value=0.03 Score=58.84 Aligned_cols=30 Identities=30% Similarity=0.672 Sum_probs=24.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEG 212 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~ 212 (664)
..++|+|.+|+|||||+..+......++..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~ 181 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGG 181 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccCc
Confidence 368999999999999999999886654443
No 280
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.20 E-value=0.035 Score=57.81 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=15.8
Q ss_pred ccCCCCCCCEEEccCCCCcccc-ccccCCCCCCEEeecC
Q 006018 576 EIGNLESLEYLNLAEKDFEKIP-SSMKQLSKLSDLRLQN 613 (664)
Q Consensus 576 ~l~~l~~L~~L~l~~n~i~~lp-~~i~~L~~L~~L~L~~ 613 (664)
.|.++.+|+.+.+..+ ++.++ ..|.++++|+.+++.+
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 3444444444444322 33332 2344444444444444
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.19 E-value=0.012 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.5
Q ss_pred eEEEEecCCCCChHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~ 204 (664)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 282
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.17 E-value=0.11 Score=53.54 Aligned_cols=107 Identities=15% Similarity=0.237 Sum_probs=76.8
Q ss_pred ccCCCCCCcEEeecCCCCCCcc-ccccCCCCCCCEEeeeCCCCCCccccccCCCCCCCEEEccCCCCccccc-cccCCCC
Q 006018 528 SIGNLSRLVDLDLTNCSGLKSV-SSRLCNLKSLRRLNLSGCLKLEKLPEEIGNLESLEYLNLAEKDFEKIPS-SMKQLSK 605 (664)
Q Consensus 528 ~~~~l~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~n~i~~lp~-~i~~L~~ 605 (664)
.+..+.+|+.+.+.. + +..+ ...+.+...|+.+.+..+ ....-...+.++.+|+.+.+..+ +..++. .+.++++
T Consensus 212 ~f~~~~~l~~i~~~~-~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITS-G-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCT-T-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccccceeeecc-c-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 455677888888864 2 3333 345778899999998764 23333456788899999998654 666654 5788999
Q ss_pred CCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCc
Q 006018 606 LSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSST 645 (664)
Q Consensus 606 L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N 645 (664)
|+.+.+.++. +..++.. .+.+|++|+.+.+..+
T Consensus 288 L~~i~l~~~~-i~~I~~~------aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 288 LTKVVMDNSA-IETLEPR------VFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CCEEEECCTT-CCEECTT------TTTTCTTCCEEECCTT
T ss_pred cccccccccc-cceehhh------hhcCCCCCCEEEcCcc
Confidence 9999998743 4455543 6889999999999865
No 283
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.11 E-value=0.016 Score=53.52 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=31.1
Q ss_pred hhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 166 SIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.-+..+..++..- ...+.+.|+|++|+|||++|..+++.+..
T Consensus 43 ~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3456666666532 22447999999999999999999998654
No 284
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.06 E-value=0.013 Score=53.54 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.++++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988653
No 285
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.05 E-value=0.011 Score=54.00 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+.|.|.|++|+||||+|+.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998875
No 286
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.05 E-value=0.012 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|+|.|++|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988753
No 287
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.04 E-value=0.01 Score=60.75 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=35.7
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
....++|.+..++.+...+... ...-|.|+|.+|+|||+||+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 4566999998666554433221 223489999999999999999998754
No 288
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.02 E-value=0.057 Score=53.53 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=27.0
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhccC--Ccceeec
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISSHF--EGSYFMQ 217 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~ 217 (664)
++.|+|.+|+||||||.+++......+ ..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 789999999999999999988866543 3455654
No 289
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.01 E-value=0.07 Score=55.49 Aligned_cols=109 Identities=17% Similarity=0.313 Sum_probs=81.3
Q ss_pred ccCCCCCCcEEeecCCCCCCccccccCCCCCCCEEeeeCCCCCCccc-cccCCCCCCCEEEccCCCCcccc-ccccCCCC
Q 006018 528 SIGNLSRLVDLDLTNCSGLKSVSSRLCNLKSLRRLNLSGCLKLEKLP-EEIGNLESLEYLNLAEKDFEKIP-SSMKQLSK 605 (664)
Q Consensus 528 ~~~~l~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~l~~n~i~~lp-~~i~~L~~ 605 (664)
.+..+.+|+.+.+.. .....-...+.++.+|+.+.+.. . +..++ ..|.++.+|+.+++..+ ++.+. ..|.++++
T Consensus 260 aF~~c~~L~~i~lp~-~~~~I~~~aF~~c~~L~~i~l~~-~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPD-SVVSIGTGAFMNCPALQDIEFSS-R-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccEEeccc-ccceecCcccccccccccccCCC-c-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 466788999999875 33333335678899999999964 3 33444 56888999999999764 77775 46889999
Q ss_pred CCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccc
Q 006018 606 LSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 606 L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~ 648 (664)
|+.+.+..+ +..++.. .|.+|++|+.+++++|...
T Consensus 336 L~~i~ip~s--v~~I~~~------aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 336 LERIAIPSS--VTKIPES------AFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp CCEEEECTT--CCBCCGG------GGTTCTTCCEEEESSCHHH
T ss_pred CCEEEECcc--cCEEhHh------HhhCCCCCCEEEECCceee
Confidence 999999653 4555543 6889999999999987643
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.99 E-value=0.015 Score=53.61 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..|.|.|++|+||||+|+.++++...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998653
No 291
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.99 E-value=0.012 Score=53.44 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.|.|.|++|+||||+|+.++.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998754
No 292
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.97 E-value=0.013 Score=59.19 Aligned_cols=48 Identities=21% Similarity=0.246 Sum_probs=32.6
Q ss_pred eehhhHHHHHhhhcC--CCCcceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 163 GVESIIKEIESQLLS--GSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 163 Gr~~~~~~l~~~L~~--~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
+.+...+++.+.+.. ..+....|.|+|++|+||||+++.++......|
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 334444444444421 223456799999999999999999998866554
No 293
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.95 E-value=0.014 Score=53.71 Aligned_cols=24 Identities=38% Similarity=0.332 Sum_probs=21.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 294
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.95 E-value=0.015 Score=52.31 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..+|+|.|++|+||||+|+.++.+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998754
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.93 E-value=0.019 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998875
No 296
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.92 E-value=0.013 Score=54.72 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|+|.|++|+||||+|+.++...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998875
No 297
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.83 E-value=0.016 Score=56.28 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=22.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|.|.|++|+||||||+.++.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 298
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.82 E-value=0.013 Score=54.14 Aligned_cols=14 Identities=29% Similarity=0.311 Sum_probs=6.4
Q ss_pred CCCCEEEccCCCCc
Q 006018 581 ESLEYLNLAEKDFE 594 (664)
Q Consensus 581 ~~L~~L~l~~n~i~ 594 (664)
+.|++|+|+.|.|.
T Consensus 98 ~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 98 PSLRVLNVESNFLT 111 (197)
T ss_dssp SSCCEEECCSSBCC
T ss_pred CccCeEecCCCcCC
Confidence 34444444444443
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.82 E-value=0.017 Score=53.23 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|.|.|++|+||||+|+.++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998765
No 300
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.81 E-value=0.014 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|+|.|++|+||||+|+.++.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988753
No 301
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.81 E-value=0.02 Score=53.39 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=24.0
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...+|+|.|++|.||||+|+.++....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998865
No 302
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.74 E-value=0.019 Score=55.43 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=28.5
Q ss_pred hhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 166 SIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+.++.............|+|.|++|+||||+|+.+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444443332222345689999999999999999998764
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.74 E-value=0.017 Score=53.86 Aligned_cols=24 Identities=33% Similarity=0.639 Sum_probs=21.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998754
No 304
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.73 E-value=0.022 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
...|+|.|++|+||||+|+.++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999887
No 305
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.72 E-value=0.036 Score=56.37 Aligned_cols=29 Identities=21% Similarity=0.046 Sum_probs=24.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
-..++|+|.+|+|||||++.+++.+....
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~ 202 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNH 202 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 45899999999999999999988765543
No 306
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.69 E-value=0.027 Score=52.02 Aligned_cols=104 Identities=12% Similarity=0.147 Sum_probs=72.4
Q ss_pred cccccccccc-ccc-----ccccccCCCCCCcEEeecCCCCCC----ccccccCCCCCCCEEeeeCCCCCCc----cccc
Q 006018 511 NIEDLDLKET-AIE-----ELPSSIGNLSRLVDLDLTNCSGLK----SVSSRLCNLKSLRRLNLSGCLKLEK----LPEE 576 (664)
Q Consensus 511 ~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~L~~~~~~~~----~p~~ 576 (664)
.|+.|+|+++ .|. .+...+..-+.|+.|+|++|.... .+...+..-+.|+.|+|+.|.+... +-..
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 6888999885 664 455667778899999999876432 2333445568899999999986543 3345
Q ss_pred cCCCCCCCEEEccCC---CCc-----cccccccCCCCCCEEeecCC
Q 006018 577 IGNLESLEYLNLAEK---DFE-----KIPSSMKQLSKLSDLRLQNC 614 (664)
Q Consensus 577 l~~l~~L~~L~l~~n---~i~-----~lp~~i~~L~~L~~L~L~~~ 614 (664)
+..-+.|++|+|++| .+. .+...+..-+.|+.|+++.|
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 666677999999865 333 23445566677888888764
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.69 E-value=0.028 Score=50.56 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=24.4
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
..++++|.|..|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 35689999999999999999999876543
No 308
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.67 E-value=0.026 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|+|.|+.|+||||+|+.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 309
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.64 E-value=0.029 Score=58.81 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=37.0
Q ss_pred CCceeehhhHHHHHhhhcCC------------CCcceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 159 DQLVGVESIIKEIESQLLSG------------STEFNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 159 ~~~vGr~~~~~~l~~~L~~~------------~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
..++|.+..++.+...+... ....+-|.++|++|+|||++|+.++......|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 35788888777776554210 01235689999999999999999999864433
No 310
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.63 E-value=0.018 Score=52.99 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=23.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
++++|.|+.|+|||||++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998765433
No 311
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.63 E-value=0.055 Score=55.70 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=58.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcce-eeccchhhh-hc-cc-------chhHHh-HHHHHHHhcCceEEEEE
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSY-FMQNIRDES-EK-VG-------GLANIH-LNFERRRLSRMKVLIVF 250 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-~~~~~~~~~-~~-~~-------~l~~~~-l~~~~~~L~~~~~LlVl 250 (664)
..+++|+|+.|.||||+++.+...+.....+.+ ++.+..+.. .. .. ++.... -..++..+...+-+|++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~ill 215 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV 215 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEE
Confidence 468999999999999999999887554323333 222111100 00 00 000011 23566777777889999
Q ss_pred ecCCCHHHHHHHhccCCCCCCCcEEEEEeCCHH
Q 006018 251 YDLTDLKQIDLLIGRLDGFVPGSRVIITTRDVQ 283 (664)
Q Consensus 251 Ddv~~~~~~~~l~~~~~~~~~gs~IliTtR~~~ 283 (664)
|.+.+.+.+....... ..|..|+.|+-..+
T Consensus 216 dE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 216 GEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp SCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred CCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 9998777665544332 34556777666443
No 312
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.59 E-value=0.018 Score=52.07 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=22.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|.|.|++|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 313
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.58 E-value=0.03 Score=51.38 Aligned_cols=27 Identities=33% Similarity=0.330 Sum_probs=23.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..+|.|.|++|+||||+|+.++.....
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999988654
No 314
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.58 E-value=0.019 Score=53.84 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..+|+|+|+.|+|||||++.+.....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999988754
No 315
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.57 E-value=0.021 Score=53.23 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=22.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|+|.|+.|+|||||++.++...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998875
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.56 E-value=0.021 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|+|.|++|+||||+|+.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998875
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.52 E-value=0.019 Score=53.74 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..+|+|.|++|+|||||++.+.....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988763
No 318
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.51 E-value=0.027 Score=52.42 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.9
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
...+|+|.|++|+||||+|+.+++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998764
No 319
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.49 E-value=0.04 Score=47.25 Aligned_cols=56 Identities=13% Similarity=0.198 Sum_probs=44.3
Q ss_pred CEEEccCCCCc--cccccccCCCCCCEEeecCCCCCCcCCCCCCCCEEeeeCCCCCccccCCCcccc
Q 006018 584 EYLNLAEKDFE--KIPSSMKQLSKLSDLRLQNCKRLQSLPELPCGSSIHARHCTSLKTLSNSSTLLT 648 (664)
Q Consensus 584 ~~L~l~~n~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~l~~~~~l~~~~~~~L~~L~ls~N~l~ 648 (664)
..++.+++.++ .+|..+ -++|+.|+|++|++ ..+|.. .+..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l-~~l~~~------~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNL-TALPPG------LLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCC-SSCCTT------TGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcC-CccChh------hhhhccccCEEEecCCCee
Confidence 47888899998 888654 24799999999765 455552 5778899999999999875
No 320
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.48 E-value=0.025 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=18.4
Q ss_pred EEEEecCCCCChHHHHHHHHHH
Q 006018 184 TVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
++.|.|.+|.|||++|......
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6789999999999999876444
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.48 E-value=0.024 Score=52.30 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+|+|.|++|+||||+|+.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 322
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.45 E-value=0.024 Score=54.94 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=23.7
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
....+|+|.|++|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999988754
No 323
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.44 E-value=0.016 Score=52.98 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=18.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|.|.|++|+||||+|+.+++...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5799999999999999999987743
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.43 E-value=0.024 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.2
Q ss_pred eEEEEecCCCCChHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~ 204 (664)
.+++|.|+.|+|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 325
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.43 E-value=0.03 Score=51.50 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|+|.|++|+||||+|+.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 326
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.43 E-value=0.022 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|+|.|++|+||||+|+.+++...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998753
No 327
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.40 E-value=0.025 Score=51.79 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..|+|.|++|+||||+|+.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998865
No 328
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.39 E-value=0.029 Score=52.88 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=24.2
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
...++|.|.|++|+||||.|+.+++++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999874
No 329
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.35 E-value=0.024 Score=52.48 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.4
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999987754
No 330
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.32 E-value=0.027 Score=50.62 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.|+|.|++|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988753
No 331
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.25 E-value=0.033 Score=51.81 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=22.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
...|+|.|++|+||||+|+.++...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3479999999999999999998875
No 332
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.24 E-value=0.028 Score=52.63 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
..|.|.|++|+||||+|+.+++.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 579999999999999999999886543
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.23 E-value=0.029 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=22.6
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
...+|+|.|++|.||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45689999999999999999988753
No 334
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.22 E-value=0.039 Score=51.81 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
..+|+|.|+.|+||||+|+.+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3589999999999999999999886543
No 335
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.20 E-value=0.03 Score=54.65 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..+|.|.|++|+||||+|+.++....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998744
No 336
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.19 E-value=0.026 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+++|.|+.|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999988763
No 337
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.16 E-value=0.026 Score=52.63 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.8
Q ss_pred EEEEecCCCCChHHHHHHHHH
Q 006018 184 TVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~ 204 (664)
+|+|.|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999887
No 338
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.15 E-value=0.028 Score=53.17 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..|.|.|++|+||||+|+.+++...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999988753
No 339
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.13 E-value=0.029 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+|+|.|+.|+||||+|+.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998764
No 340
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.11 E-value=0.061 Score=55.09 Aligned_cols=40 Identities=30% Similarity=0.449 Sum_probs=29.5
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..++.+.+........+|+|+|.+|+|||||+..++....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3344444443345678999999999999999999887654
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.10 E-value=0.031 Score=51.91 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.4
Q ss_pred cceEEEEecCCCCChHHHHHHHHHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
...+|+|.|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4568999999999999999999875
No 342
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.08 E-value=0.032 Score=52.30 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=23.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..+|+|.|+.|+||||+|+.+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987544
No 343
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.06 E-value=0.034 Score=53.41 Aligned_cols=35 Identities=26% Similarity=0.157 Sum_probs=26.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
-.++.|.|.+|+||||||..++......-..++|+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 45899999999999999998887754433344444
No 344
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.05 E-value=0.043 Score=52.14 Aligned_cols=26 Identities=19% Similarity=0.095 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
-.+++|.|.+|+|||||++.++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999987654
No 345
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.04 E-value=0.03 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=21.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+|+|.|+.|+||||+++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998765
No 346
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.04 E-value=0.06 Score=58.83 Aligned_cols=27 Identities=30% Similarity=0.240 Sum_probs=23.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
+++.|.|.+|.||||++..+.......
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 588999999999999999998875543
No 347
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.01 E-value=0.038 Score=55.40 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=32.8
Q ss_pred ceeehhhHHHHHhhhcCC--CCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 161 LVGVESIIKEIESQLLSG--STEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~--~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
++|-...+..+...+... .....+|+|.|..|+||||||+.+.....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555555555444333 23466899999999999999999877654
No 348
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.94 E-value=0.034 Score=52.15 Aligned_cols=27 Identities=33% Similarity=0.382 Sum_probs=23.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...+|+|.|..|.|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988654
No 349
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.94 E-value=0.034 Score=51.20 Aligned_cols=24 Identities=38% Similarity=0.581 Sum_probs=21.9
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
+|+|.|+.|+||||+|+.+.++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 350
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.92 E-value=0.04 Score=51.90 Aligned_cols=24 Identities=25% Similarity=0.095 Sum_probs=21.6
Q ss_pred cceEEEEecCCCCChHHHHHHHHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~ 204 (664)
.-.+++|.|.+|+||||||..++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999887
No 351
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.88 E-value=0.04 Score=54.56 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.8
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
...+|.|.|++|+||||+|+.+..+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 352
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.86 E-value=0.034 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|+|.|+.|+|||||++.+++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999775
No 353
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.83 E-value=0.038 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=22.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
...+|+|.|+.|+||||+|+.+.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998876
No 354
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.82 E-value=0.033 Score=52.03 Aligned_cols=22 Identities=45% Similarity=0.459 Sum_probs=20.1
Q ss_pred eEEEEecCCCCChHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~ 204 (664)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 355
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.80 E-value=0.031 Score=51.98 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
+.++|+|+.|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999887653
No 356
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.79 E-value=0.057 Score=54.56 Aligned_cols=97 Identities=19% Similarity=0.100 Sum_probs=56.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceeeccchhhhh----cccch---hH-HhHHHHHHHhcCceEEEEEecCC
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQNIRDESE----KVGGL---AN-IHLNFERRRLSRMKVLIVFYDLT 254 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~----~~~~l---~~-~~l~~~~~~L~~~~~LlVlDdv~ 254 (664)
..++|+|..|.|||||++.+...+.. -.+.+.+.+..+... ....+ .. .....+...|...+-++++|.+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 47999999999999999998876433 234444443221110 00001 01 12345667778888899999998
Q ss_pred CHHHHHHHhccCCCCCCCcEEEEEeCCHH
Q 006018 255 DLKQIDLLIGRLDGFVPGSRVIITTRDVQ 283 (664)
Q Consensus 255 ~~~~~~~l~~~~~~~~~gs~IliTtR~~~ 283 (664)
+.+.++.+. .+.. + +.-+|+||-...
T Consensus 251 ~~e~~~~l~-~~~~-g-~~tvi~t~H~~~ 276 (330)
T 2pt7_A 251 SSEAYDFYN-VLCS-G-HKGTLTTLHAGS 276 (330)
T ss_dssp STHHHHHHH-HHHT-T-CCCEEEEEECSS
T ss_pred hHHHHHHHH-HHhc-C-CCEEEEEEcccH
Confidence 755555443 2221 1 223566665443
No 357
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.76 E-value=0.047 Score=54.84 Aligned_cols=37 Identities=24% Similarity=0.100 Sum_probs=27.9
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
..-.++.|.|.+|+||||||..++.....+-..+.|+
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~ 102 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 102 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3446899999999999999999987755433445554
No 358
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.76 E-value=0.037 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.6
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.-.+++|+|+.|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998753
No 359
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.75 E-value=0.036 Score=52.74 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
...|.|.|++|+||||+|+.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998864
No 360
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.71 E-value=0.039 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.6
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.|+|.|++|+||||+|+.++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 361
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.70 E-value=0.033 Score=53.77 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..|+|.|+.|+||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998754
No 362
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.66 E-value=0.035 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.177 Sum_probs=22.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..|.|.|++|+||||+|+.++++..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 363
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.64 E-value=0.041 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.4
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.|+|.|++|+||||+|+.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 364
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.60 E-value=0.043 Score=50.69 Aligned_cols=25 Identities=24% Similarity=0.330 Sum_probs=22.2
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhc
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.|+|.|+.|+||||+|+.+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 365
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.59 E-value=0.048 Score=49.57 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..+|+|.|+.|+||||+++.+.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999988753
No 366
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.58 E-value=0.11 Score=52.93 Aligned_cols=53 Identities=21% Similarity=0.180 Sum_probs=35.8
Q ss_pred hhhHHHHHhhhc-CCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 165 ESIIKEIESQLL-SGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 165 ~~~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
..-+..|...|. .+-..-.++.|+|.+|+||||||..++......-..++|+.
T Consensus 43 ~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 43 PTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 334455656664 23234568999999999999999999877654433455553
No 367
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.57 E-value=0.088 Score=53.02 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.2
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
...+++|+|+.|+||||+++.++.....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4579999999999999999999877544
No 368
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.55 E-value=0.04 Score=52.81 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=26.8
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.|..+|..+-..-.+++|.|.+|+|||||++.++..+
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3444443222334689999999999999999998763
No 369
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.54 E-value=0.039 Score=52.06 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..|.|.|++|+||||+|+.+++++
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999875
No 370
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.52 E-value=0.15 Score=54.26 Aligned_cols=42 Identities=21% Similarity=0.220 Sum_probs=29.7
Q ss_pred hhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 166 SIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 166 ~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
..+..+...+..+. +.+.|.|.+|+|||+++..+...+....
T Consensus 32 ~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 32 NAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp HHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 34444444554322 3899999999999999999988865543
No 371
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.50 E-value=0.041 Score=53.31 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|+|.|+.|+||||+++.++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999764
No 372
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.49 E-value=0.11 Score=52.96 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=37.0
Q ss_pred eehhhHHHHHhhhc-CCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 163 GVESIIKEIESQLL-SGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 163 Gr~~~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
+...-+..|..+|. .+-..-.++.|.|.+|+||||||..++......-..++|+.
T Consensus 43 ~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 43 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 33344455555564 22234568999999999999999999887655434555554
No 373
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.46 E-value=0.1 Score=51.92 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=24.8
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
...+|+|+|.+|+||||++..++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 35799999999999999999998876543
No 374
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.46 E-value=0.052 Score=51.17 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=30.8
Q ss_pred hhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 165 ESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 165 ~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
++..+++.+.+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3444555555432 346789999999999999999998875443
No 375
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.42 E-value=0.051 Score=51.44 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=28.1
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.+.+...+.. .....|+|+|.+|+|||||+..+......
T Consensus 26 a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 26 ADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3444444432 24678999999999999999999877433
No 376
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.41 E-value=0.06 Score=52.20 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=23.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...+|.|.|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999988754
No 377
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.39 E-value=0.067 Score=53.60 Aligned_cols=29 Identities=34% Similarity=0.564 Sum_probs=23.4
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
++.++|+|.|=|||||||.|.-++.-+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 35789999999999999999877665433
No 378
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.36 E-value=0.044 Score=50.97 Aligned_cols=24 Identities=29% Similarity=0.309 Sum_probs=22.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..|+|.|+.|+||||+++.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998875
No 379
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.31 E-value=0.05 Score=51.81 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|+|.|++|+||||+|+.++..+.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999988753
No 380
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.31 E-value=0.046 Score=51.17 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
-.+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999988764
No 381
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.30 E-value=0.1 Score=52.36 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=24.2
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
...+|+|+|.+|+||||++..++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999998887554
No 382
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.25 E-value=0.052 Score=52.24 Aligned_cols=24 Identities=38% Similarity=0.299 Sum_probs=21.3
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|.|+.|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999998854
No 383
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.25 E-value=0.053 Score=59.89 Aligned_cols=47 Identities=23% Similarity=0.316 Sum_probs=39.8
Q ss_pred CCCCceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 157 NKDQLVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 157 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4467899999999988888654 4799999999999999999998754
No 384
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.24 E-value=0.055 Score=50.76 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=23.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..+|.|.|+.|+||||+|+.+.....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999988764
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.23 E-value=0.081 Score=52.70 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.2
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
...+|+|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3569999999999999999999887654
No 386
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.21 E-value=0.051 Score=54.40 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=23.9
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
....+|+|.|..|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3457999999999999999999887654
No 387
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.17 E-value=0.027 Score=52.89 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.3
Q ss_pred EEEEecCCCCChHHHHHHHHHHhhc
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
+|+|.|..|+||||+|+.+...+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987643
No 388
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.16 E-value=0.043 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999988754
No 389
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.16 E-value=0.13 Score=47.45 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=21.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
..+|+|+|++|+||+|+|..+.+.+
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHc
Confidence 4699999999999999999887654
No 390
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.15 E-value=0.056 Score=54.44 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=22.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.+|+|.|+.|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998754
No 391
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.13 E-value=0.057 Score=50.33 Aligned_cols=24 Identities=25% Similarity=0.363 Sum_probs=21.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
+|+|.|+.|+||||+|+.++....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988653
No 392
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.07 E-value=0.061 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.7
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
...+|+|.|..|.|||||++.++...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999988764
No 393
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.06 E-value=0.059 Score=47.96 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.0
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.-.+++|.|+.|.|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34589999999999999999998875
No 394
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.05 E-value=0.051 Score=54.35 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
++|.|+|+.|+||||||+.++.+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998753
No 395
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.03 E-value=0.066 Score=54.40 Aligned_cols=29 Identities=28% Similarity=0.134 Sum_probs=24.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
-..++|.|.+|+|||+|+..+++.+....
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 45789999999999999999998865433
No 396
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.02 E-value=0.043 Score=55.09 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=23.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.++|.|+|+.|+||||||..+++++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 35899999999999999999998754
No 397
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.00 E-value=0.058 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..|.|.|++|+||||+|+.+++++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998754
No 398
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.93 E-value=0.12 Score=51.36 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..+++++|.+|+||||++..++.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999998877654
No 399
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.90 E-value=0.071 Score=48.29 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.++++|.|..|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999887543
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.87 E-value=0.062 Score=50.92 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=21.0
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 401
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.85 E-value=0.062 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=20.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998875
No 402
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.83 E-value=0.058 Score=50.95 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=22.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
-.+++|+|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999987654
No 403
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.81 E-value=0.064 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.595 Sum_probs=21.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~ 204 (664)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999883
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.75 E-value=0.073 Score=50.16 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.3
Q ss_pred eEEEEecCCCCChHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~ 204 (664)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 405
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.67 E-value=0.13 Score=53.77 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=24.7
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
...+|+++|.+|+||||++..++..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999999998776543
No 406
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.60 E-value=0.061 Score=49.48 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHhh
Q 006018 184 TVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
+++|+|+.|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999887754
No 407
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.56 E-value=0.071 Score=52.94 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..+++|+|.+|+||||++..++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999988765
No 408
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.52 E-value=0.07 Score=52.86 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
++|.|.|+.|+||||||..++.++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 5889999999999999999998753
No 409
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.50 E-value=0.065 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=21.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
+.|.|.|+.|+||||||.+++.+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 56889999999999999999887
No 410
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.49 E-value=0.11 Score=51.67 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.2
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
...+++|+|+.|+||||+++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999887654
No 411
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.49 E-value=0.09 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.7
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.++|.|.|+.|+||||||..+++++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999874
No 412
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.46 E-value=0.18 Score=52.87 Aligned_cols=34 Identities=26% Similarity=0.442 Sum_probs=26.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhcc-CCccee
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSH-FEGSYF 215 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~ 215 (664)
-..++|.|.+|+|||+|+..+++.+... -+.++|
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~ 187 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF 187 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEE
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEE
Confidence 3578999999999999999999886433 233444
No 413
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.46 E-value=0.13 Score=48.28 Aligned_cols=27 Identities=19% Similarity=0.027 Sum_probs=22.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
-.|.+.|.||+||||+|..++.....+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 347889999999999999988885543
No 414
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.41 E-value=0.07 Score=51.28 Aligned_cols=25 Identities=40% Similarity=0.335 Sum_probs=21.7
Q ss_pred cceEEEEecCCCCChHHHHHHHHHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.-.++.|.|.+|+|||++|..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998765
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.37 E-value=0.08 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=21.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+|.|.|++|+||||+|+.+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 416
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.37 E-value=0.05 Score=53.88 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=20.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...+|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988654
No 417
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.31 E-value=0.1 Score=53.50 Aligned_cols=27 Identities=26% Similarity=0.090 Sum_probs=23.4
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
....+++|+|++|.|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345689999999999999999999764
No 418
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.18 E-value=0.052 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=16.3
Q ss_pred ceEEEEecCCCCChHHHHHHHH-HHh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIY-SNI 206 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~-~~~ 206 (664)
..+++|.|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 543
No 419
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.17 E-value=0.11 Score=51.62 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=24.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
-.+++|.|.+|+|||||++.++......
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4589999999999999999998876543
No 420
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.16 E-value=0.095 Score=54.96 Aligned_cols=27 Identities=37% Similarity=0.434 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.++|+|+|.+|+||||+|..++.....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999998887543
No 421
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.07 E-value=0.047 Score=49.35 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
++++|+|..|+|||||++.+...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999998887554
No 422
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.04 E-value=0.12 Score=52.93 Aligned_cols=55 Identities=24% Similarity=0.171 Sum_probs=36.7
Q ss_pred eehhhHHHHHhhhc-CCCCcceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 163 GVESIIKEIESQLL-SGSTEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 163 Gr~~~~~~l~~~L~-~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
+...-+..|...|. .+-..-.++.|.|.+|+||||||..++......-..++|+.
T Consensus 54 ~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 54 VVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp EECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 33444555666664 22234568999999999999999999887654434555553
No 423
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.98 E-value=0.075 Score=49.72 Aligned_cols=23 Identities=35% Similarity=0.208 Sum_probs=20.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+++|.|+.|.|||||++.++--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988754
No 424
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.97 E-value=0.14 Score=49.64 Aligned_cols=27 Identities=26% Similarity=0.264 Sum_probs=23.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356889999999999999999987654
No 425
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.96 E-value=0.091 Score=50.36 Aligned_cols=23 Identities=22% Similarity=0.253 Sum_probs=20.9
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+++|.|+.|.|||||.+.++--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999988754
No 426
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.93 E-value=0.52 Score=46.26 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
...|+++|.+|+|||||...+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~ 143 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKK 143 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CceEEEEecCCCchHHHHHHHhcC
Confidence 356899999999999999887643
No 427
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.90 E-value=0.098 Score=52.34 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=23.4
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
...+|+|.|..|+|||||++.+.....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356999999999999999999887654
No 428
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.89 E-value=0.12 Score=52.10 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=27.2
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
.|..+|..+-..-.++.|+|.+|+||||||..++....
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~ 132 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQ 132 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence 34444432223356899999999999999999988743
No 429
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.89 E-value=0.11 Score=49.72 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.9
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
...+|+|.|+.|+||||+++.++...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998864
No 430
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.86 E-value=0.14 Score=51.13 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=24.6
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
..++|+|+|-||+||||+|..++..+...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~ 68 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSIL 68 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHC
Confidence 46789999999999999999988876553
No 431
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.80 E-value=0.16 Score=53.27 Aligned_cols=30 Identities=23% Similarity=0.222 Sum_probs=25.6
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
...++|.++|.+|+||||+|..++..+..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 346799999999999999999999886654
No 432
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.71 E-value=0.1 Score=48.01 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
...|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998875
No 433
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.65 E-value=0.17 Score=51.45 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
...+++|+|+.|+||||+++.++..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3568999999999999999999887654
No 434
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.64 E-value=0.19 Score=52.92 Aligned_cols=35 Identities=31% Similarity=0.476 Sum_probs=27.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc-cCCcceee
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS-HFEGSYFM 216 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~ 216 (664)
-..++|.|.+|+|||+|+..+.+.+.. +-+.++|.
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 357899999999999999999998643 33444443
No 435
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.63 E-value=0.085 Score=50.45 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|+|+.|.|||||.+.++--
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999987654
No 436
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.61 E-value=0.18 Score=51.28 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=27.4
Q ss_pred HHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 170 EIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 170 ~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.|..+|..+-..-.++.|+|.+|+||||||..++...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443232445789999999999999999998874
No 437
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.60 E-value=0.21 Score=53.29 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=23.2
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..++|+|+|.+|+||||++..++..+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999877554
No 438
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.59 E-value=0.12 Score=45.48 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
+.|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998765
No 439
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.59 E-value=0.081 Score=50.16 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+++|+|+.|+|||||.+.++--
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999987654
No 440
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.57 E-value=0.17 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.0
Q ss_pred EEEEecCCCCChHHHHHHHHHH
Q 006018 184 TVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-|.|+|.+|+|||+|+..+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3778999999999999988754
No 441
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.56 E-value=0.15 Score=49.66 Aligned_cols=27 Identities=37% Similarity=0.662 Sum_probs=22.8
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
++|+|.|-||+||||+|..++.....+
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~ 28 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAM 28 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHC
Confidence 578888999999999999988876543
No 442
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.55 E-value=0.13 Score=54.81 Aligned_cols=48 Identities=6% Similarity=0.038 Sum_probs=33.1
Q ss_pred ceeehhhHHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 161 LVGVESIIKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
...|.+..+.+.+......+...+|.+.|++|+||||+|++++++...
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 344444445555544222233468999999999999999999998753
No 443
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.48 E-value=0.061 Score=59.11 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=36.2
Q ss_pred CCCceeehhhHHHHHhhhcCCCCc---------ceEEEEecCCCCChHHHHHHHHHHh
Q 006018 158 KDQLVGVESIIKEIESQLLSGSTE---------FNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 158 ~~~~vGr~~~~~~l~~~L~~~~~~---------~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+.++|.+...+.+...+..+... ..-|.++|.+|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 356899998877776666543210 1158899999999999999988764
No 444
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.45 E-value=0.11 Score=52.93 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=27.0
Q ss_pred HHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHh
Q 006018 171 IESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 171 l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
|...|..+-..-.++.|+|.+|+|||||++.++...
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334443232445799999999999999999998775
No 445
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.43 E-value=0.096 Score=54.83 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=23.0
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
...+|.|+|++|+||||+|+.++.+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999988764
No 446
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.43 E-value=0.12 Score=46.06 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998763
No 447
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.42 E-value=0.13 Score=48.90 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
....|+|.|++|+||||+++.++.....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998764
No 448
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.42 E-value=0.11 Score=48.07 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
..|+|+|.+|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999998865
No 449
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.37 E-value=0.17 Score=52.90 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=24.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhcc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSH 209 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~ 209 (664)
...+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36799999999999999999988775543
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.35 E-value=0.1 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
-.+++|+|.+|+||||||..++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999887654
No 451
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.32 E-value=0.17 Score=53.48 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.2
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
...+++|+|..|+|||||++.++..+..
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 3568999999999999999999887654
No 452
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.30 E-value=0.22 Score=50.60 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.0
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
....+|+|+|.+|+|||||+..+.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999886643
No 453
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.30 E-value=0.14 Score=53.98 Aligned_cols=37 Identities=24% Similarity=0.100 Sum_probs=27.7
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
..-.++.|.|.+|+||||+|..++.....+-..+.|+
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 3346899999999999999999998865442234444
No 454
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.29 E-value=0.12 Score=53.23 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
++|+|.|+.|+||||||..++..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5789999999999999999998754
No 455
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.28 E-value=0.096 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|+|+.|.|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988754
No 456
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.21 E-value=0.12 Score=50.01 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=20.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+++|.|+.|.|||||++.++--
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988764
No 457
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.17 E-value=0.095 Score=47.75 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.0
Q ss_pred EEEEecCCCCChHHHHHHHHH
Q 006018 184 TVGIWGIGGIGKTTIASAIYS 204 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~ 204 (664)
-|+|+|.+|+|||||+..+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999998876
No 458
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.14 E-value=0.18 Score=50.06 Aligned_cols=27 Identities=30% Similarity=0.238 Sum_probs=23.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..+++|+|.+|+||||++..++.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999887654
No 459
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.10 E-value=0.1 Score=50.83 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|+|+.|+|||||.+.++--
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999987754
No 460
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.08 E-value=0.1 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+++|+|+.|.|||||++.++--
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999987653
No 461
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.04 E-value=0.12 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|+|+.|.|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988764
No 462
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.00 E-value=0.11 Score=49.93 Aligned_cols=23 Identities=43% Similarity=0.468 Sum_probs=20.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+++|+|+.|.|||||.+.++--
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999987754
No 463
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.95 E-value=0.095 Score=49.23 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=20.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+++|+|+.|.|||||.+.++--
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999987654
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.91 E-value=0.15 Score=48.87 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
..|+|.|..|+||||+++.+++...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5799999999999999999998763
No 465
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.88 E-value=0.11 Score=50.72 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.0
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|+|+.|.|||||++.++--
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 358999999999999999988764
No 466
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.88 E-value=0.11 Score=50.42 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=20.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|+|+.|.|||||.+.++--
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988754
No 467
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.87 E-value=0.23 Score=52.62 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=24.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.-.++.|.|.+|+||||||..++..+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999988654
No 468
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=90.85 E-value=0.14 Score=47.56 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=23.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
.+|+|.|+.|+||||+|+.++++..-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998643
No 469
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.84 E-value=0.13 Score=51.01 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=22.8
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHh
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.-.+++|+|+.|.|||||++.+..-+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999988765
No 470
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.83 E-value=0.11 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=20.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|+|+.|.|||||++.++--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 358999999999999999987754
No 471
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.80 E-value=0.11 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.7
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+++|+|+.|.|||||.+.++--
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999988754
No 472
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.78 E-value=0.16 Score=46.34 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.5
Q ss_pred cceEEEEecCCCCChHHHHHHHHHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999988765
No 473
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.75 E-value=0.13 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.616 Sum_probs=19.6
Q ss_pred EEEEecCCCCChHHHHHHHHHH
Q 006018 184 TVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 184 ~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998765
No 474
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.73 E-value=0.12 Score=49.89 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
.+++|+|+.|.|||||++.++--
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999987654
No 475
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.71 E-value=0.28 Score=49.66 Aligned_cols=28 Identities=36% Similarity=0.476 Sum_probs=23.8
Q ss_pred CcceEEEEecCCCCChHHHHHHHHHHhh
Q 006018 180 TEFNTVGIWGIGGIGKTTIASAIYSNIS 207 (664)
Q Consensus 180 ~~~~~v~I~G~gGiGKTtLA~~~~~~~~ 207 (664)
....+++|+|.+|+|||||.+.+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4467999999999999999999886543
No 476
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.70 E-value=0.2 Score=49.51 Aligned_cols=26 Identities=31% Similarity=0.653 Sum_probs=22.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
++|+|.|-||+||||+|..++.....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 57888999999999999998887554
No 477
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.66 E-value=0.12 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.252 Sum_probs=21.1
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|+|+.|.|||||.+.++--
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988754
No 478
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.62 E-value=0.59 Score=42.52 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
--|+|+|.+|+|||||...+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 45889999999999999998875
No 479
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.60 E-value=0.12 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|.|+.|.|||||.+.++--
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988753
No 480
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.55 E-value=0.29 Score=51.69 Aligned_cols=39 Identities=23% Similarity=0.136 Sum_probs=28.8
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHHhhc
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSNISS 208 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~~~~ 208 (664)
..|...+ .+-..-.++.|.|.+|+||||+|..++..+..
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3444444 33334568999999999999999999988654
No 481
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.53 E-value=0.22 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.3
Q ss_pred cceEEEEecCCCCChHHHHHHHHHH
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988754
No 482
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.51 E-value=0.12 Score=50.12 Aligned_cols=34 Identities=32% Similarity=0.395 Sum_probs=25.6
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
-.+++|+|+.|.|||||++.++.-.. . .+.+++.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~-~G~I~i~ 79 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFYD-A-EGDIKIG 79 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC-C-EEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC-C-CeEEEEC
Confidence 35899999999999999999876543 1 4555543
No 483
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=90.49 E-value=0.26 Score=49.68 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=27.1
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
.-.++.|.|.+|+||||||..++.....+=..+.|+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f 80 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF 80 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 345899999999999999999988865432334444
No 484
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.48 E-value=0.14 Score=53.01 Aligned_cols=37 Identities=16% Similarity=0.252 Sum_probs=26.5
Q ss_pred HHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH
Q 006018 169 KEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 169 ~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
..|..+|..+-..-.++.|+|.+|+|||||+..++-.
T Consensus 165 ~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 165 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 3444555333234568999999999999999987644
No 485
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.43 E-value=0.13 Score=49.64 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=25.1
Q ss_pred eEEEEecCCCCChHHHHHHHHHHhhccCCcceee
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFM 216 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 216 (664)
.+++|+|+.|.|||||.+.++--.... +.+++
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~ 58 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQF 58 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEE
Confidence 489999999999999999887665443 44444
No 486
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.41 E-value=0.15 Score=46.41 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=20.2
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.|+++|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35889999999999999998865
No 487
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.40 E-value=0.13 Score=50.36 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.9
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|+|+.|.|||||++.++--
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999988754
No 488
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=90.39 E-value=0.46 Score=53.50 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=54.2
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhh----ccCCc--ce---eec------cchhhhhcccchhHHhHHHHHHHh--cCc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNIS----SHFEG--SY---FMQ------NIRDESEKVGGLANIHLNFERRRL--SRM 244 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~----~~f~~--~~---~~~------~~~~~~~~~~~l~~~~l~~~~~~L--~~~ 244 (664)
..+++|.|+.|.|||||.+.++--.. ..|-. .. ++. .+.+...........+...+...+ ..+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~ 655 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATE 655 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCT
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhccC
Confidence 36899999999999999998875421 11110 00 000 011110000000011222333444 667
Q ss_pred eEEEEEecC---CCHHH---H-HHHhccCCCCCCCcEEEEEeCCHHHHH
Q 006018 245 KVLIVFYDL---TDLKQ---I-DLLIGRLDGFVPGSRVIITTRDVQLLK 286 (664)
Q Consensus 245 ~~LlVlDdv---~~~~~---~-~~l~~~~~~~~~gs~IliTtR~~~~~~ 286 (664)
+-|++||.. -+.-+ . ..+...+.. .|+.+|++|-+.+...
T Consensus 656 p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 656 NSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTA 702 (765)
T ss_dssp TEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHT
T ss_pred CCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHH
Confidence 899999998 33211 1 123333322 4789999999887754
No 489
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.38 E-value=0.26 Score=60.77 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=28.7
Q ss_pred cceEEEEecCCCCChHHHHHHHHHHhhccCCcceeec
Q 006018 181 EFNTVGIWGIGGIGKTTIASAIYSNISSHFEGSYFMQ 217 (664)
Q Consensus 181 ~~~~v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 217 (664)
..+.|.|+|++|+|||+||.+++.....+=..+.|+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 4568999999999999999999888655434455553
No 490
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=90.38 E-value=0.17 Score=47.85 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.5
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
-.++|.|++|+||||+|+.+++++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 491
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.34 E-value=0.17 Score=45.97 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 492
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.30 E-value=1.9 Score=45.16 Aligned_cols=45 Identities=13% Similarity=0.313 Sum_probs=31.7
Q ss_pred ceeehhhHHHHHhhhcCC-----CCcceEEEEecCCCCChHHHHHHHHHH
Q 006018 161 LVGVESIIKEIESQLLSG-----STEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 161 ~vGr~~~~~~l~~~L~~~-----~~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
=.|.++.++.+.+.+... ......|+|+|.+|+|||||...+...
T Consensus 149 g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~ 198 (436)
T 2hjg_A 149 GLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 198 (436)
T ss_dssp TBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCC
Confidence 346666666666555321 123567899999999999999998754
No 493
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.29 E-value=0.69 Score=45.89 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=25.2
Q ss_pred HHHHHhhhcCCCCcceEEEEecCCCCChHHHHHHHHHH
Q 006018 168 IKEIESQLLSGSTEFNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 168 ~~~l~~~L~~~~~~~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
++++...+. -.+++|.|+.|+|||||.+.+...
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhccc
Confidence 455555553 247899999999999999988754
No 494
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=90.27 E-value=0.59 Score=53.78 Aligned_cols=106 Identities=15% Similarity=-0.019 Sum_probs=54.5
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH-h---hccCCc--ceeeccchhhhhccc---------chhHHhHHHHHHHh--cCc
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN-I---SSHFEG--SYFMQNIRDESEKVG---------GLANIHLNFERRRL--SRM 244 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~-~---~~~f~~--~~~~~~~~~~~~~~~---------~l~~~~l~~~~~~L--~~~ 244 (664)
..+++|.|+.|.||||+.+.++-- + ...|-. ...+..+.......+ ..-..+...+...+ ...
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~ 741 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATK 741 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccC
Confidence 468999999999999999988432 1 111110 000000111111111 00011222333333 567
Q ss_pred eEEEEEecCC---CHHH---H-HHHhccCCCCCCCcEEEEEeCCHHHHHhh
Q 006018 245 KVLIVFYDLT---DLKQ---I-DLLIGRLDGFVPGSRVIITTRDVQLLKNH 288 (664)
Q Consensus 245 ~~LlVlDdv~---~~~~---~-~~l~~~~~~~~~gs~IliTtR~~~~~~~~ 288 (664)
+-|++||..- +... + ..+...+.. ..|+.||++|-+.++...+
T Consensus 742 ~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~-~~g~~vl~aTH~~el~~la 791 (934)
T 3thx_A 742 DSLIIIDELGRGTSTYDGFGLAWAISEYIAT-KIGAFCMFATHFHELTALA 791 (934)
T ss_dssp TCEEEEESCSCSSCHHHHHHHHHHHHHHHHH-TTCCEEEEEESCGGGGGGG
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCCEEEEEcCcHHHHHHh
Confidence 8899999973 2221 1 222232221 2478999999998776543
No 495
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.24 E-value=0.13 Score=50.06 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.8
Q ss_pred ceEEEEecCCCCChHHHHHHHHHH
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.+++|+|+.|.|||||.+.++--
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999987654
No 496
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.23 E-value=0.24 Score=53.41 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=24.4
Q ss_pred ceEEEEecCCCCChHHHHHHHHHHhhccC
Q 006018 182 FNTVGIWGIGGIGKTTIASAIYSNISSHF 210 (664)
Q Consensus 182 ~~~v~I~G~gGiGKTtLA~~~~~~~~~~f 210 (664)
..+|.++|++|.||||+|+.+++.....|
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 46899999999999999999998764433
No 497
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.22 E-value=0.2 Score=44.39 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.3
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
-.|+|+|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999998865
No 498
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=90.21 E-value=0.15 Score=47.95 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.4
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+|+|.|+.|+||||+|+.+....
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999988764
No 499
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.20 E-value=0.13 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.454 Sum_probs=21.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHHh
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSNI 206 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~~ 206 (664)
.+++|+|+.|.|||||.+.++--.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999887643
No 500
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.17 E-value=0.16 Score=45.43 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.0
Q ss_pred eEEEEecCCCCChHHHHHHHHHH
Q 006018 183 NTVGIWGIGGIGKTTIASAIYSN 205 (664)
Q Consensus 183 ~~v~I~G~gGiGKTtLA~~~~~~ 205 (664)
--|+|+|.+|+|||||...+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999988754
Done!