BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006020
(664 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255567240|ref|XP_002524601.1| hypothetical protein RCOM_1213430 [Ricinus communis]
gi|223536154|gb|EEF37809.1| hypothetical protein RCOM_1213430 [Ricinus communis]
Length = 963
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/671 (71%), Positives = 554/671 (82%), Gaps = 11/671 (1%)
Query: 1 MALSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESL 60
+ LSERDQP+EEPWL QSS I + +D + P++ + +N +++ D+++Q Q + L
Sbjct: 198 LVLSERDQPVEEPWLLQSSIIFVISKDKIMPNISKNNNIAANDSKAWDANSQHLQVKDKL 257
Query: 61 LPEKGS-LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
P GS I KD+ +ST+ILINSSICTMQRIAVLE+ KLVELLLEPVK+NVQCDSVYLGV
Sbjct: 258 SPADGSNFILKDDSISTIILINSSICTMQRIAVLEEGKLVELLLEPVKTNVQCDSVYLGV 317
Query: 120 VTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVT 179
VTK VP+MGGAFVNIG+SRPSLMDIK REPFIFPPFR +TKK+++N S +LEEH
Sbjct: 318 VTKFVPHMGGAFVNIGHSRPSLMDIKQSREPFIFPPFRQKTKKEKMNDSGLDSLEEHQAA 377
Query: 180 YDNDSTSHNTE---DVAEADSQDDLVQFEHNDDEEHDGD-DFDVSEVLKNVNGSIIDDGE 235
N+ TS + E DVAE SQ+DLV HND +EH+ D DFD+SEV +NVNGSI+D G+
Sbjct: 378 DGNEHTSQDIEGIDDVAEFISQEDLVSLPHNDHDEHEADEDFDISEVKENVNGSIVDYGQ 437
Query: 236 PEADFEDFLEG-DHHLDGE-SNGFFPSKSEVPDDSHTSHPQGTKDSKHT-PGEKTWLQVQ 292
+ FE FL G HHL+GE N PS++E + S S PQ KDS+H + W QV+
Sbjct: 438 ADPRFEHFLGGRQHHLEGEIMNRVVPSETEGSNGSKMSQPQYRKDSEHLLANDNKWTQVR 497
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAK 352
KGTK++VQVVKEGLGTKGPTLTAYPKLRSRFWIL CDRIG+S+KI+G+ERTRL+VIAK
Sbjct: 498 KGTKIVVQVVKEGLGTKGPTLTAYPKLRSRFWILHARCDRIGISKKISGIERTRLRVIAK 557
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
TLQP GFGLT RTVA GHSLEELQKDLEGLLSTWKNI+EHAKSAALAADEG+EGA+P++L
Sbjct: 558 TLQPPGFGLTARTVAGGHSLEELQKDLEGLLSTWKNILEHAKSAALAADEGIEGAIPVIL 617
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H AMGQTLS+VQDYF+EKVKKMVVDSPRTYHEVT+YLQ+IAPDLCDRVELYDKRIPLFD+
Sbjct: 618 HTAMGQTLSVVQDYFSEKVKKMVVDSPRTYHEVTNYLQEIAPDLCDRVELYDKRIPLFDE 677
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IEEEINN+LSKRVPLP GGSLVIEQTEALVSIDVNGGH MFG G+S+EKAILDVNL A
Sbjct: 678 YKIEEEINNILSKRVPLPRGGSLVIEQTEALVSIDVNGGHVMFGQGNSQEKAILDVNLEA 737
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
AK+IARELRLRDIGGIIVVDFIDMADDSNKRLVYEE+K AVE DRSMVKVSELS+HGLME
Sbjct: 738 AKRIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEMKTAVEGDRSMVKVSELSKHGLME 797
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLV---SKSYNQSTFYF 649
ITRKRVRPSV+FMISEPCTCC TGRVEALETSFSKIEQEI RLL K+Y ++ +
Sbjct: 798 ITRKRVRPSVSFMISEPCTCCHATGRVEALETSFSKIEQEICRLLAMMDQKAYPENPKTW 857
Query: 650 IRHIPKRRKHL 660
R + + H+
Sbjct: 858 PRFLLRVDHHM 868
>gi|225447486|ref|XP_002267175.1| PREDICTED: uncharacterized protein LOC100256290 [Vitis vinifera]
Length = 1019
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/644 (74%), Positives = 549/644 (85%), Gaps = 12/644 (1%)
Query: 2 ALSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLL 61
+S RDQP+EEPWL QSS L+A ++ + +M + + + E L +Q + TE LL
Sbjct: 269 TVSMRDQPVEEPWLLQSS--LIASKEEMVSNMSKNIDAAQVEVSHLKLLDQSYLHTEKLL 326
Query: 62 PEKGS-LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
PE+G+ LISKD+ VSTVILINSSICTMQRIAVLED LVELLLEPVKSNVQCDSVYLGVV
Sbjct: 327 PEEGTNLISKDDSVSTVILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVV 386
Query: 121 TKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTY 180
TKLVP+MGGAFVNIG+SRPSLMDIK REPFIFPPF TK+++ NGS L E+ + +
Sbjct: 387 TKLVPHMGGAFVNIGSSRPSLMDIKRSREPFIFPPFHHGTKEKD-NGSVFNTLRENPIAH 445
Query: 181 DNDSTSHNTE--DVAEADSQDDLVQFEHNDDEEHD-GDDFDVSEVLKNVNGSIIDDGEPE 237
+N+ TS++ E D+ E D QDD VQF H+D EEH+ DDFDV + K++NGSI+D G E
Sbjct: 446 ENEHTSYDVEADDLREVDFQDDPVQFAHDDFEEHEVEDDFDVL-IKKDLNGSIVDHGGVE 504
Query: 238 ADFEDFLEG-DHHLDGES-NGFFPSKSEVP-DDSHTSHPQGTKDSKHTPG-EKTWLQVQK 293
DF+D+ +G ++H+D E+ N F P + E DS KDS+ E W QVQK
Sbjct: 505 VDFDDYSDGIENHIDSETINNFLPVELEKGFHDSQLPPLLEMKDSRQAYTVENKWAQVQK 564
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
GTK+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C+RIGVS+KI+GVERTRL+VIAKT
Sbjct: 565 GTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTCCNRIGVSKKISGVERTRLRVIAKT 624
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
LQP+GFGLT+RTVAAGH+LEELQKDLEGLLSTWKNI+EHAKSAALAADEGVEGA+P++LH
Sbjct: 625 LQPKGFGLTVRTVAAGHTLEELQKDLEGLLSTWKNIVEHAKSAALAADEGVEGAIPVILH 684
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
RAMGQTLS+VQDYFNEKV+ MVVDSPRTYHEVT+YLQ+IAPDLCDRVELY+KR+PLFD+F
Sbjct: 685 RAMGQTLSVVQDYFNEKVESMVVDSPRTYHEVTNYLQEIAPDLCDRVELYNKRVPLFDEF 744
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
NIEEEINN+LSKRVPLPNGGSLVIEQTEALVSIDVNGGHGM G+G+S+EKAILDVNLAAA
Sbjct: 745 NIEEEINNILSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMLGNGTSQEKAILDVNLAAA 804
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
KQIARELRLRDIGGIIVVDFIDM DDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI
Sbjct: 805 KQIARELRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 864
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
TRKRVRPSVTFMISEPC+CC GTGRVEALETSFSKIEQEI RLL
Sbjct: 865 TRKRVRPSVTFMISEPCSCCHGTGRVEALETSFSKIEQEICRLL 908
>gi|224131900|ref|XP_002321206.1| predicted protein [Populus trichocarpa]
gi|222861979|gb|EEE99521.1| predicted protein [Populus trichocarpa]
Length = 923
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/641 (73%), Positives = 528/641 (82%), Gaps = 20/641 (3%)
Query: 5 ERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLPEK 64
ERDQP+EEPWL QS I + ++D + D+ + S+ +D ++Q + + L
Sbjct: 188 ERDQPLEEPWLLQSPVISVVFKDKLTQDVSKNSDTVEDGLKKFKVNDQGMKVKDKLSANG 247
Query: 65 GSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLV 124
+L KD+ VSTVILI+SSICTMQRIAVLEDEKLVELLLEPVK+ V CDSVY+GVVTKLV
Sbjct: 248 SNLNLKDDSVSTVILISSSICTMQRIAVLEDEKLVELLLEPVKNTVLCDSVYIGVVTKLV 307
Query: 125 PNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDS 184
P+MGGAFVNIG+SRPSLMDIK REPFIFPPF RTKK EVNGS A EEH ++N+
Sbjct: 308 PHMGGAFVNIGSSRPSLMDIKQNREPFIFPPFCQRTKKGEVNGSVLKAFEEHPAAHENEH 367
Query: 185 TSHNTE---DVAEADSQDDLVQFEHNDDEEHD-GDDFDVSEVLKNVNGSIIDDGEPEADF 240
TSH+ E DV+E DL F H+D EEH+ DDFDVSEV +NVNGSI+D GE +ADF
Sbjct: 368 TSHDVEVIDDVSEFVFHSDLAPFLHDDHEEHEVDDDFDVSEVKENVNGSIVDYGEVDADF 427
Query: 241 EDFLEG-DHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT-PGEKTWLQVQKGTKVI 298
E FL+G +HHL+G D + SH Q KD+KHT E W QV+KGTKVI
Sbjct: 428 EQFLDGREHHLEG-------------DTASLSH-QDIKDAKHTLTSENKWSQVRKGTKVI 473
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLGTKGPT+TAYPKLRSRFWILIT CDRIGVS+K++GVERTRLKVIAKTLQP G
Sbjct: 474 VQVVKEGLGTKGPTVTAYPKLRSRFWILITRCDRIGVSKKVSGVERTRLKVIAKTLQPPG 533
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
FGLT+RTVAAGHS EELQKDLEGLLSTWK+IMEHAKSAALA DEGVEGA+P++LHRAMGQ
Sbjct: 534 FGLTVRTVAAGHSFEELQKDLEGLLSTWKSIMEHAKSAALAEDEGVEGAIPVVLHRAMGQ 593
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
TLS+VQDYF+EKV+KM+VDSPRTYHEVT+YLQ+IAPDLC RVELYDKR PLFD+F IEEE
Sbjct: 594 TLSVVQDYFSEKVRKMMVDSPRTYHEVTNYLQEIAPDLCGRVELYDKRTPLFDEFKIEEE 653
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
INN+LSKRVPL +GGSLVIEQTEALVSIDVNGGH M +S+EKAILDVNLAAAK+IAR
Sbjct: 654 INNILSKRVPLSSGGSLVIEQTEALVSIDVNGGHVMLRQRTSQEKAILDVNLAAAKRIAR 713
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRV 598
ELRLRDIGGIIVVDFIDMAD+SNKRLVYE VK+AVERDRS VKVSELS HGLMEITRKRV
Sbjct: 714 ELRLRDIGGIIVVDFIDMADESNKRLVYEAVKRAVERDRSTVKVSELSNHGLMEITRKRV 773
Query: 599 RPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVS 639
RPSVTFMISEPCTCC TGRVEALETSFSKIEQEI R L +
Sbjct: 774 RPSVTFMISEPCTCCHATGRVEALETSFSKIEQEICRSLAT 814
>gi|356551838|ref|XP_003544280.1| PREDICTED: uncharacterized protein LOC100809907 [Glycine max]
Length = 983
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/647 (71%), Positives = 538/647 (83%), Gaps = 34/647 (5%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
LSE QP+EEPWL+ ++ + ++ ++ E + K++ + D + + LL
Sbjct: 252 LSENYQPVEEPWLYSFCSVV--SNNKMESNVSETGDTAKEKVKLADRE-------QLLLE 302
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
E +++SKD+F ST+ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVY+GVVTK
Sbjct: 303 ESSNIMSKDSF-STIILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYVGVVTK 361
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IGNSR + MDIK +EPFIFPPFR RTKKQE++ + N
Sbjct: 362 LVPHMGGAFVSIGNSRSAFMDIKQNKEPFIFPPFRQRTKKQEID-----------LEGKN 410
Query: 183 DSTSHN---TEDVAEADSQDDLVQFEHNDDEEHDGDD-FDVSEVLK-NVNGSIIDDGEPE 237
D TSH ++ ++ +S+D ++ HND +EH+GDD F +SEVLK NVNGS++DD E E
Sbjct: 411 DHTSHVIDVSDGTSDINSEDGCLKSVHNDYDEHEGDDDFYISEVLKENVNGSMVDD-EVE 469
Query: 238 ADFEDFLEG-DHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKH----TPGEKTWLQVQ 292
ADFED +EG D H++GE+N S + S TSH TKD+K T GE W+QV+
Sbjct: 470 ADFEDDIEGSDVHIEGETNN--SSLLLGMNGSVTSHILQTKDTKKATHVTSGENKWIQVR 527
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAK 352
KGTKVIVQVVKE LGTKGPTLTAYPKL+SRFW+LI CD+IGVS+KI+GVERTRLKVIAK
Sbjct: 528 KGTKVIVQVVKEDLGTKGPTLTAYPKLKSRFWVLIACCDKIGVSKKISGVERTRLKVIAK 587
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
TLQPEGFGLT+RTVAAGHS EELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP++L
Sbjct: 588 TLQPEGFGLTVRTVAAGHSFEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPVIL 647
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
HRAMGQTLS+VQDYFNE VKKMVVDSPRT+HEVT+YLQ+IAPDLCDRVELYDK++PLFD+
Sbjct: 648 HRAMGQTLSVVQDYFNENVKKMVVDSPRTFHEVTNYLQEIAPDLCDRVELYDKKVPLFDE 707
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
FNIE EI+N+LSKRVPL NGGSL+IEQTEALVSIDVNGGHGM GHG+S+++AILDVNLAA
Sbjct: 708 FNIEGEIDNILSKRVPLANGGSLIIEQTEALVSIDVNGGHGMLGHGNSQQQAILDVNLAA 767
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
AKQIARELRLRDIGGIIVVDFIDM D++NKRLVYEEVKKA+ERDRSMVKVSELSRHGLME
Sbjct: 768 AKQIARELRLRDIGGIIVVDFIDMTDEANKRLVYEEVKKAIERDRSMVKVSELSRHGLME 827
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVS 639
ITRKRVRPSVTFMISEPC CC TGRVEALETSFSKIEQ+I RLL +
Sbjct: 828 ITRKRVRPSVTFMISEPCACCHATGRVEALETSFSKIEQQICRLLAT 874
>gi|356498920|ref|XP_003518294.1| PREDICTED: uncharacterized protein LOC100795436 [Glycine max]
Length = 937
Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/645 (70%), Positives = 531/645 (82%), Gaps = 30/645 (4%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
LSE QP+EEPWL S + + + ++ ++ E + K++ + D + + LL
Sbjct: 206 LSENYQPVEEPWLH--SFLSIVSNNKMESNVSENGDTAKEKVKLADRE-------QLLLE 256
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
E +++SKD+F ST+ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVY+GVVTK
Sbjct: 257 ESSNIMSKDSF-STIILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYVGVVTK 315
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IGNSR + MDIK +EPFIFPPFR RT KQE+N + N
Sbjct: 316 LVPHMGGAFVSIGNSRSAFMDIKQNKEPFIFPPFRQRTAKQEIN-----------LEGKN 364
Query: 183 DSTSHN---TEDVAEADSQDDLVQFEHNDDEEHDG-DDFDVSEVLK-NVNGSIIDDGEPE 237
D TSH ++ +++ S+D ++ HND +EH+G DDF + EVLK NVNGS++DD E E
Sbjct: 365 DHTSHVVDVSDGISDIKSEDGCLKSVHNDYDEHEGYDDFYIPEVLKENVNGSMVDD-EVE 423
Query: 238 ADFEDFLEG-DHHLDGESNGF-FPSKSEVPDDSHTSHPQGTKDSKHTP-GEKTWLQVQKG 294
DFED +EG D H++GE+N F + +SH + TK + H GE W+QV+KG
Sbjct: 424 VDFEDDIEGSDVHIEGETNNSSFLLGTNGSVNSHILQTKDTKKATHVASGENKWIQVRKG 483
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTL 354
TKVIVQVVKE LGTKGPTLTAYPKLRSRFW+LI CD+IGVS+KI+GVERTRLKVIAKTL
Sbjct: 484 TKVIVQVVKEDLGTKGPTLTAYPKLRSRFWVLIACCDKIGVSKKISGVERTRLKVIAKTL 543
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
QPEGFGLT+RTVAAGHS EELQKDLE LLSTWKNIMEHAKSAALAADEGVEGAVP++LHR
Sbjct: 544 QPEGFGLTLRTVAAGHSFEELQKDLERLLSTWKNIMEHAKSAALAADEGVEGAVPVILHR 603
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
AMGQTLS+VQDYFNE VKKMVVDSPRT+HEVT+YLQ+IAPDLCDRVELYDK++PLFD+FN
Sbjct: 604 AMGQTLSVVQDYFNENVKKMVVDSPRTFHEVTNYLQEIAPDLCDRVELYDKKVPLFDEFN 663
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE EI+N+LSKRVPL NGGSL+IEQTEALVSIDVNGGHGM GHG+S+++AILDVNL+AAK
Sbjct: 664 IEGEIDNILSKRVPLANGGSLIIEQTEALVSIDVNGGHGMLGHGNSQQQAILDVNLSAAK 723
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
QIARELRLRDIGGIIVVDFIDM D++NKR VYEEVKKA+ERDRSMVKVSELSRHGLMEIT
Sbjct: 724 QIARELRLRDIGGIIVVDFIDMTDEANKRFVYEEVKKAIERDRSMVKVSELSRHGLMEIT 783
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVS 639
RKRVRPSVTFM+SEPC CC TGRVEALETSFSKIEQ+I RLL +
Sbjct: 784 RKRVRPSVTFMVSEPCACCHATGRVEALETSFSKIEQQICRLLAT 828
>gi|357490525|ref|XP_003615550.1| Ribonuclease E [Medicago truncatula]
gi|355516885|gb|AES98508.1| Ribonuclease E [Medicago truncatula]
Length = 1009
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/673 (67%), Positives = 531/673 (78%), Gaps = 46/673 (6%)
Query: 2 ALSERDQPIEEPWLFQSSPILLAYE----------DTVKPD---------MPEKSNNE-- 40
LSE QP+EEPWL S +++ + D VK +PE+S+N
Sbjct: 257 VLSENYQPVEEPWLLHSLRSVISEDKTESNESKTNDIVKEQVKLVDSEELLPEESSNAIL 316
Query: 41 KD--EAMILDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKL 98
KD +IL + + K D+E LLPE+ S + VST+ILINSSICTMQRIAVLEDEKL
Sbjct: 317 KDPVSTIILINSSMKSVDSEELLPEESSNTILKDPVSTIILINSSICTMQRIAVLEDEKL 376
Query: 99 VELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRC 158
VELLLEPVK+NVQ DSVY+G +TKLVP+MGGA V+IGNSRPSLMDIK Y+EPFIFPPFR
Sbjct: 377 VELLLEPVKTNVQSDSVYVGEITKLVPSMGGALVDIGNSRPSLMDIKPYKEPFIFPPFRR 436
Query: 159 RTKKQEVNGSASAALEEHAVTYDNDSTSHNTE---DVAEADSQDDLVQFEHNDDEEHDGD 215
RTKKQE+ + ND S T+ + + S+DD ++ HND +EH+ D
Sbjct: 437 RTKKQEI-----------VLKGKNDHMSRATDIPGGIRDIHSEDDCLKSVHNDYDEHETD 485
Query: 216 D-FDVSEVLK-NVNGSIIDDGEPEADFEDFLEG-DHHLDGESNGFFPSKSEVPDDSHTSH 272
D F +SEVLK NVNGS++DD E EADFED +EG D H +G+ N S S + S H
Sbjct: 486 DDFCLSEVLKENVNGSVVDD-EVEADFEDDVEGADVHTEGKMNN--GSLSLGMNGSINFH 542
Query: 273 PQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDR 332
TKD+K GE W+QV+ GTK++VQVVKEGLGTKGPTLTA+P LRSRFW+L T CD+
Sbjct: 543 ILPTKDTKREMGENKWIQVRSGTKIVVQVVKEGLGTKGPTLTAFPILRSRFWVLTTRCDK 602
Query: 333 IGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEH 392
IGVS+KI+G ERTRLKVIAKTLQPEGFGLT+RTVAAGHS EELQKDLEGLLSTWKNIME+
Sbjct: 603 IGVSKKISGAERTRLKVIAKTLQPEGFGLTVRTVAAGHSFEELQKDLEGLLSTWKNIMEN 662
Query: 393 AKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKV---KKMVVDSPRTYHEVTSYL 449
AKS+ALAADE VEGAVP +LHRAMGQTLS+VQDYFNE V KKMVVDSPRT+HEVT+YL
Sbjct: 663 AKSSALAADERVEGAVPAILHRAMGQTLSVVQDYFNENVGSVKKMVVDSPRTFHEVTNYL 722
Query: 450 QDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVN 509
QDIAPDLCDRVELY+K++PLFD++NIE E++N+LSKRVPL NGGSL+IEQTEALVSIDVN
Sbjct: 723 QDIAPDLCDRVELYNKKVPLFDEYNIEGELDNILSKRVPLANGGSLIIEQTEALVSIDVN 782
Query: 510 GGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEV 569
GGHGM H +SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDM D++NKRLVYEEV
Sbjct: 783 GGHGMLDHDTSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMTDEANKRLVYEEV 842
Query: 570 KKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
KKA+ERDRS+VKVSELSRHGLMEITRKRVRPSVTFM+SEPC CC TGRVEALETSF KI
Sbjct: 843 KKAIERDRSVVKVSELSRHGLMEITRKRVRPSVTFMVSEPCDCCHATGRVEALETSFFKI 902
Query: 630 EQEISRLLVSKSY 642
EQ+I R+L + ++
Sbjct: 903 EQQICRILATMNH 915
>gi|449470204|ref|XP_004152808.1| PREDICTED: uncharacterized protein LOC101204095 [Cucumis sativus]
Length = 992
Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/642 (68%), Positives = 514/642 (80%), Gaps = 17/642 (2%)
Query: 6 RDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLPEKG 65
R QP+EEPWL S ++ ++PD+ + + K+EA +L++ + +D +LLP G
Sbjct: 251 RHQPVEEPWLPLS---FYLPKNVLEPDLLKNDVSIKEEATVLETRDPLLEDAANLLPTSG 307
Query: 66 SLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVP 125
+ + +ST+ILINSSICTMQRIAVLE+ KLVELLLEPVKSNVQCDSVYLGVV+KLVP
Sbjct: 308 ADTMLKDPISTIILINSSICTMQRIAVLEEGKLVELLLEPVKSNVQCDSVYLGVVSKLVP 367
Query: 126 NMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVN-----GSASAALEEHAVTY 180
+MGGAFVNIGNSRPSLMDIK REPFIFPPF R KQ +N G ++ E
Sbjct: 368 HMGGAFVNIGNSRPSLMDIKQNREPFIFPPFCQRVNKQVINDCSIQGQLTSLGESILSIP 427
Query: 181 DNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEAD- 239
ND + D+ ++ V +H D+E DG FDV EV +NVNGSI+DD
Sbjct: 428 KNDGVA----DIEIQNTSMLSVLDDHEDNEVEDG--FDVLEVRENVNGSIVDDDGDLDAD 481
Query: 240 FEDFLEGD-HHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKH-TPGEKTWLQVQKGTKV 297
FED ++ HHL+G ++ + + + DS S Q KDSK E WLQV+KGTK+
Sbjct: 482 FEDCIDDKAHHLEGHASISYSATASYSSDSQLSFLQYGKDSKQIVTDENKWLQVRKGTKI 541
Query: 298 IVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPE 357
IVQVVKEGLGTK P LTAYP+LRSRFWIL+T CDRIG+S+KI+GVERTRL+VIAKTLQP+
Sbjct: 542 IVQVVKEGLGTKSPMLTAYPRLRSRFWILLTRCDRIGISKKISGVERTRLRVIAKTLQPQ 601
Query: 358 GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMG 417
GFGLT+RTVAAGHSLEELQKDL+GL+STWK I E+AKSAALAADEGVEGAVP++LHRAMG
Sbjct: 602 GFGLTVRTVAAGHSLEELQKDLDGLISTWKTITENAKSAALAADEGVEGAVPVILHRAMG 661
Query: 418 QTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEE 477
QTLS+VQDYFN+KVK+MVVDSPRTYHEVT+YLQ+IAPDLCDRVEL+ RIPLFDKFNIEE
Sbjct: 662 QTLSVVQDYFNDKVKRMVVDSPRTYHEVTNYLQEIAPDLCDRVELFHGRIPLFDKFNIEE 721
Query: 478 EINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIA 537
EIN+++SKRVPL NGGSL+IEQTEALVSIDVNGGHG+FG SS+E AIL+VNLAAA+QIA
Sbjct: 722 EINSIISKRVPLVNGGSLIIEQTEALVSIDVNGGHGVFGQASSQENAILEVNLAAARQIA 781
Query: 538 RELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
RELRLRDIGGIIVVDFIDM D+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKR
Sbjct: 782 RELRLRDIGGIIVVDFIDMEDESNKRLVYEEVKKAVERDRSIVKVSELSRHGLMEITRKR 841
Query: 598 VRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVS 639
VRPSVTFMISEPC CC TGRVEALETSFSKIEQEI R L +
Sbjct: 842 VRPSVTFMISEPCACCHATGRVEALETSFSKIEQEICRQLAT 883
>gi|449477847|ref|XP_004155141.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC101228180, partial [Cucumis sativus]
Length = 926
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/642 (68%), Positives = 512/642 (79%), Gaps = 17/642 (2%)
Query: 6 RDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLPEKG 65
R QP+EEPWL S ++ ++PD+ + + K+EA +L++ + +D +LLP G
Sbjct: 185 RHQPVEEPWLPLS---FYLPKNVLEPDLLKNDVSIKEEATVLETRDPLLEDAANLLPTSG 241
Query: 66 SLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVP 125
+ + +ST+ILINSSICTMQRIAVLE+ KLVELLLEPVKSNVQCDSVYLGVV+KLVP
Sbjct: 242 ADTMLKDPISTIILINSSICTMQRIAVLEEGKLVELLLEPVKSNVQCDSVYLGVVSKLVP 301
Query: 126 NMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVN-----GSASAALEEHAVTY 180
+MGGAFVNIGNSRPSLMDIK REPFIFPPF R KQ +N G ++ E
Sbjct: 302 HMGGAFVNIGNSRPSLMDIKQNREPFIFPPFCQRVNKQVINDCSIQGQLTSLGESILSIP 361
Query: 181 DNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEAD- 239
ND + D+ ++ V +H D+E DG FDV EV +NVNGSI+DD
Sbjct: 362 KNDGVA----DIEIQNTSMLSVLDDHEDNEVEDG--FDVLEVRENVNGSIVDDDGDLDAD 415
Query: 240 FEDFLEGD-HHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKH-TPGEKTWLQVQKGTKV 297
FED ++ HHL+G ++ + + + DS S Q KDSK E WLQV+KGTK+
Sbjct: 416 FEDCIDDKAHHLEGHASISYSATASYSSDSQLSFLQYGKDSKQIVTDENKWLQVRKGTKI 475
Query: 298 IVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPE 357
IVQVVKEGLGTK P LTAYP+LRSRFWIL+T CDRIG+S+KI+GVERTRL+VIAKTLQP+
Sbjct: 476 IVQVVKEGLGTKSPMLTAYPRLRSRFWILLTRCDRIGISKKISGVERTRLRVIAKTLQPQ 535
Query: 358 GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMG 417
GFGLT+RTVAAGHSLEELQKDL+GL+STWK I E+AKSAALAADEGVEGAVP++LHRAMG
Sbjct: 536 GFGLTVRTVAAGHSLEELQKDLDGLISTWKTITENAKSAALAADEGVEGAVPVILHRAMG 595
Query: 418 QTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEE 477
QTLS+VQDYFN+KVK+MVVDSPRTYHEVT+YLQ+IAPDLCDRVEL+ RIPLFDKFN EE
Sbjct: 596 QTLSVVQDYFNDKVKRMVVDSPRTYHEVTNYLQEIAPDLCDRVELFHGRIPLFDKFNTEE 655
Query: 478 EINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIA 537
EIN+++SKRVPL NGGSL+IEQTEALVSIDVNGGHG+FG SS+E AIL+ NLAAA+QIA
Sbjct: 656 EINSIISKRVPLVNGGSLIIEQTEALVSIDVNGGHGVFGQASSQENAILEXNLAAARQIA 715
Query: 538 RELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
RELRLRDIGGIIVVDFIDM D+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKR
Sbjct: 716 RELRLRDIGGIIVVDFIDMEDESNKRLVYEEVKKAVERDRSIVKVSELSRHGLMEITRKR 775
Query: 598 VRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVS 639
VRPSVTFMISEPC CC TGRVEALETSFSKIEQEI R L +
Sbjct: 776 VRPSVTFMISEPCACCHATGRVEALETSFSKIEQEICRQLAT 817
>gi|297831502|ref|XP_002883633.1| glycoside hydrolase starch-binding domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
gi|297329473|gb|EFH59892.1| glycoside hydrolase starch-binding domain-containing protein
[Arabidopsis lyrata subsp. lyrata]
Length = 991
Score = 823 bits (2125), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/641 (67%), Positives = 508/641 (79%), Gaps = 25/641 (3%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPE--KSNNEKDEAMILDSDNQKFQDTESL 60
S+ QPIEEPWL Q S I L + ++ D + +S +E + +++ + Q Q TE+L
Sbjct: 255 FSDNYQPIEEPWLIQDS-ITLQHARNMQTDSEQDVESCDENENSLL--TVEQNHQLTETL 311
Query: 61 LPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
LP+ G + +ST ILINSSICT+QRIAVLE EKLVELLLEPVK+NVQCDSVYLGV+
Sbjct: 312 LPDGGFF--QPESISTTILINSSICTVQRIAVLEGEKLVELLLEPVKTNVQCDSVYLGVI 369
Query: 121 TKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTY 180
TK VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +GS ++ + +
Sbjct: 370 TKFVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSINDIPAPH 429
Query: 181 DNDSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPE 237
+ + S++ E + + DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 430 EIEHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDALVGLVNGTVVNHGAVE 488
Query: 238 ADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPG-EKTWLQVQKGTK 296
G NG P + E DS S+P +K SK P + W+QV+KGTK
Sbjct: 489 V-------------GSENGLIPLEREHSVDSLVSNPSVSKTSKAMPSKDNKWIQVRKGTK 535
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQP 356
+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP
Sbjct: 536 IIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQP 595
Query: 357 EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAM 416
+GFGLT+RTVAAGHSLEELQKDLEGLL TWKNI + AKS+ALAADEGVEGA+P LLHRAM
Sbjct: 596 QGFGLTVRTVAAGHSLEELQKDLEGLLLTWKNITDEAKSSALAADEGVEGAIPALLHRAM 655
Query: 417 GQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIE 476
GQTLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD ++IE
Sbjct: 656 GQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYDIE 715
Query: 477 EEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQI 536
EEI +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAA +QI
Sbjct: 716 EEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAGRQI 775
Query: 537 ARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRK 596
ARE+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRK
Sbjct: 776 AREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRK 835
Query: 597 RVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
RVRPSVTFMISEPC+CC TGRVEALETSFSKIEQEI R L
Sbjct: 836 RVRPSVTFMISEPCSCCHATGRVEALETSFSKIEQEICRQL 876
>gi|27368501|emb|CAD48421.1| putative endoribonuclease E [Arabidopsis thaliana]
Length = 818
Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/640 (67%), Positives = 503/640 (78%), Gaps = 21/640 (3%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
S+ QPIEEPWL Q S I L +E ++ D + + D L++D Q Q TE+LLP
Sbjct: 81 FSDNYQPIEEPWLIQES-ITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTETLLP 139
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPVK+NVQCDSVYLGV+TK
Sbjct: 140 DGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITK 197
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +GS ++ + ++
Sbjct: 198 FVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEI 257
Query: 183 DSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPEAD 239
+ S++ E + + DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 258 EHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLAGLVNGTVVNHGAVEV- 315
Query: 240 FEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HTPGEKTWLQVQKGTKVI 298
G NG P + DS S+ K SK + + W+QV+KGTK+I
Sbjct: 316 ------------GSENGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKII 363
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP+G
Sbjct: 364 VQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQPQG 423
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
FGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADEGVEGA+P LLHRAMGQ
Sbjct: 424 FGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQ 483
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
TLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD + IEEE
Sbjct: 484 TLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEE 543
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
I +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAAA+QIAR
Sbjct: 544 IEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR 603
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRV 598
E+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKRV
Sbjct: 604 EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRV 663
Query: 599 RPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLV 638
RPSVTFMISEPC+CC TGRVEALET+FSKIEQEI R L
Sbjct: 664 RPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLA 703
>gi|30678102|ref|NP_850987.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|25991183|gb|AAN76770.1|AF450479_1 endoribonuclease [Arabidopsis thaliana]
gi|330250719|gb|AEC05813.1| RNAse E/G-like protein [Arabidopsis thaliana]
Length = 996
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/640 (67%), Positives = 503/640 (78%), Gaps = 21/640 (3%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
S+ QPIEEPWL Q S I L +E ++ D + + D L++D Q Q TE+LLP
Sbjct: 259 FSDNYQPIEEPWLIQES-ITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTETLLP 317
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPVK+NVQCDSVYLGV+TK
Sbjct: 318 DGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITK 375
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +GS ++ + ++
Sbjct: 376 FVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEI 435
Query: 183 DSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPEAD 239
+ S++ E + + DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 436 EHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLAGLVNGTVVNHGAVEV- 493
Query: 240 FEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HTPGEKTWLQVQKGTKVI 298
G NG P + DS S+ K SK + + W+QV+KGTK+I
Sbjct: 494 ------------GSENGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKII 541
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP+G
Sbjct: 542 VQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQPQG 601
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
FGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADEGVEGA+P LLHRAMGQ
Sbjct: 602 FGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQ 661
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
TLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD + IEEE
Sbjct: 662 TLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEE 721
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
I +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAAA+QIAR
Sbjct: 722 IEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR 781
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRV 598
E+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKRV
Sbjct: 782 EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRV 841
Query: 599 RPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLV 638
RPSVTFMISEPC+CC TGRVEALET+FSKIEQEI R L
Sbjct: 842 RPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLA 881
>gi|30678104|ref|NP_850988.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|330250722|gb|AEC05816.1| RNAse E/G-like protein [Arabidopsis thaliana]
Length = 871
Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/640 (67%), Positives = 503/640 (78%), Gaps = 21/640 (3%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
S+ QPIEEPWL Q S I L +E ++ D + + D L++D Q Q TE+LLP
Sbjct: 134 FSDNYQPIEEPWLIQES-ITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTETLLP 192
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPVK+NVQCDSVYLGV+TK
Sbjct: 193 DGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITK 250
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +GS ++ + ++
Sbjct: 251 FVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEI 310
Query: 183 DSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPEAD 239
+ S++ E + + DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 311 EHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLAGLVNGTVVNHGAVEV- 368
Query: 240 FEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HTPGEKTWLQVQKGTKVI 298
G NG P + DS S+ K SK + + W+QV+KGTK+I
Sbjct: 369 ------------GSENGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKII 416
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP+G
Sbjct: 417 VQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQPQG 476
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
FGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADEGVEGA+P LLHRAMGQ
Sbjct: 477 FGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQ 536
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
TLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD + IEEE
Sbjct: 537 TLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEE 596
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
I +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAAA+QIAR
Sbjct: 597 IEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR 656
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRV 598
E+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKRV
Sbjct: 657 EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRV 716
Query: 599 RPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLV 638
RPSVTFMISEPC+CC TGRVEALET+FSKIEQEI R L
Sbjct: 717 RPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLA 756
>gi|334184138|ref|NP_001189510.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|330250723|gb|AEC05817.1| RNAse E/G-like protein [Arabidopsis thaliana]
Length = 1001
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/640 (67%), Positives = 503/640 (78%), Gaps = 21/640 (3%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
S+ QPIEEPWL Q S I L +E ++ D + + D L++D Q Q TE+LLP
Sbjct: 264 FSDNYQPIEEPWLIQES-ITLQHERNMQTDSEQDVESCDDNENNLNTDEQNHQLTETLLP 322
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPVK+NVQCDSVYLGV+TK
Sbjct: 323 DGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITK 380
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +GS ++ + ++
Sbjct: 381 FVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEI 440
Query: 183 DSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPEAD 239
+ S++ E + + DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 441 EHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLAGLVNGTVVNHGAVEV- 498
Query: 240 FEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HTPGEKTWLQVQKGTKVI 298
G NG P + DS S+ K SK + + W+QV+KGTK+I
Sbjct: 499 ------------GSENGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKII 546
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP+G
Sbjct: 547 VQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQPQG 606
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
FGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADEGVEGA+P LLHRAMGQ
Sbjct: 607 FGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQ 666
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
TLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD + IEEE
Sbjct: 667 TLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEE 726
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
I +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAAA+QIAR
Sbjct: 727 IEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAR 786
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRV 598
E+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKRV
Sbjct: 787 EIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRV 846
Query: 599 RPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLV 638
RPSVTFMISEPC+CC TGRVEALET+FSKIEQEI R L
Sbjct: 847 RPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLA 886
>gi|30678106|ref|NP_850989.1| RNAse E/G-like protein [Arabidopsis thaliana]
gi|330250721|gb|AEC05815.1| RNAse E/G-like protein [Arabidopsis thaliana]
Length = 619
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/607 (68%), Positives = 486/607 (80%), Gaps = 20/607 (3%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPV 106
L++D Q Q TE+LLP+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPV
Sbjct: 19 LNTDEQNHQLTETLLPDGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPV 76
Query: 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVN 166
K+NVQCDSVYLGV+TK VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +
Sbjct: 77 KTNVQCDSVYLGVITKFVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAAD 136
Query: 167 GSASAALEEHAVTYDNDSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLK 224
GS ++ + ++ + S++ E + + DS D F +DDE + D++ VS+ L
Sbjct: 137 GSPILSMNDIPAPHEIEHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLA 195
Query: 225 N-VNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HT 282
VNG++++ G E G NG P + DS S+ K SK +
Sbjct: 196 GLVNGTVVNHGAVEV-------------GSENGHIPMERGHSADSLDSNASVAKASKVMS 242
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV 342
+ W+QV+KGTK+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GV
Sbjct: 243 SKDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGV 302
Query: 343 ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADE 402
ERTRLKVIAKTLQP+GFGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADE
Sbjct: 303 ERTRLKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADE 362
Query: 403 GVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVEL 462
GVEGA+P LLHRAMGQTLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL
Sbjct: 363 GVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVEL 422
Query: 463 YDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKE 522
+DK IPLFD + IEEEI +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+E
Sbjct: 423 HDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQE 482
Query: 523 KAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKV 582
KAIL+VNLAAA+QIARE+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKV
Sbjct: 483 KAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKV 542
Query: 583 SELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSY 642
SELSRHGLMEITRKRVRPSVTFMISEPC+CC TGRVEALET+FSKIEQEI R LVS
Sbjct: 543 SELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLVSVII 602
Query: 643 NQSTFYF 649
+ YF
Sbjct: 603 SILFCYF 609
>gi|22325461|ref|NP_178508.2| RNAse E/G-like protein [Arabidopsis thaliana]
gi|20260628|gb|AAM13212.1| putative ribonuclease E [Arabidopsis thaliana]
gi|31711752|gb|AAP68232.1| At2g04270 [Arabidopsis thaliana]
gi|330250720|gb|AEC05814.1| RNAse E/G-like protein [Arabidopsis thaliana]
Length = 713
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/595 (69%), Positives = 481/595 (80%), Gaps = 20/595 (3%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPV 106
L++D Q Q TE+LLP+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPV
Sbjct: 19 LNTDEQNHQLTETLLPDGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPV 76
Query: 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVN 166
K+NVQCDSVYLGV+TK VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ +
Sbjct: 77 KTNVQCDSVYLGVITKFVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQAAD 136
Query: 167 GSASAALEEHAVTYDNDSTSHNTE--DVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLK 224
GS ++ + ++ + S++ E + + DS D F +DDE + D++ VS+ L
Sbjct: 137 GSPILSMNDIPAPHEIEHASYDFEASSLLDIDSNDPGESFHDDDDEHEN-DEYHVSDHLA 195
Query: 225 N-VNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSK-HT 282
VNG++++ G E G NG P + DS S+ K SK +
Sbjct: 196 GLVNGTVVNHGAVEV-------------GSENGHIPMERGHSADSLDSNASVAKASKVMS 242
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV 342
+ W+QV+KGTK+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GV
Sbjct: 243 SKDNKWIQVRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGV 302
Query: 343 ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADE 402
ERTRLKVIAKTLQP+GFGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADE
Sbjct: 303 ERTRLKVIAKTLQPQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADE 362
Query: 403 GVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVEL 462
GVEGA+P LLHRAMGQTLS+VQDYFN+KV+KMVVDSPRTYHEVT YLQD+APDLC+RVEL
Sbjct: 363 GVEGAIPALLHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMAPDLCNRVEL 422
Query: 463 YDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKE 522
+DK IPLFD + IEEEI +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+E
Sbjct: 423 HDKGIPLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQE 482
Query: 523 KAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKV 582
KAIL+VNLAAA+QIARE+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKV
Sbjct: 483 KAILEVNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKV 542
Query: 583 SELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
SELSRHGLMEITRKRVRPSVTFMISEPC+CC TGRVEALET+FSKIEQEI R L
Sbjct: 543 SELSRHGLMEITRKRVRPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQL 597
>gi|350535989|ref|NP_001234480.1| ribonuclease E [Solanum lycopersicum]
gi|166203325|gb|ABY84671.1| ribonuclease E [Solanum lycopersicum]
Length = 935
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/647 (63%), Positives = 499/647 (77%), Gaps = 34/647 (5%)
Query: 10 IEEPWLFQSSPILLAYEDTVKPD--MPEKSNNEKDEAMILDSD-----------NQKFQD 56
+EEPWL Q+ + +++ + PD E+S+N KDEA SD NQ Q
Sbjct: 193 VEEPWLLQACMLSPSFDAEMAPDDFEVEQSDN-KDEAQPPFSDQLEQLAQPSSSNQHEQI 251
Query: 57 TESLLP-EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSV 115
E LL ++ ISK++ +T+ILINSS+CT+QRIAVLE+EKLVELLLEPVK+NVQCDSV
Sbjct: 252 PEKLLDVDQCDAISKEDSFTTIILINSSVCTVQRIAVLENEKLVELLLEPVKNNVQCDSV 311
Query: 116 YLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEE 175
YLGVVTKL P+MGGAFVNIG SRPS MDIK REPF+FPPF ++++ +NG++ LEE
Sbjct: 312 YLGVVTKLAPHMGGAFVNIGTSRPSFMDIKPNREPFVFPPFCHDSREKVINGASVDMLEE 371
Query: 176 HAVTYDNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHD---GDDFDVSEVL-KNVNGSII 231
+ N ST + D+ + E+ D E D GD D+ EVL +N NGS+
Sbjct: 372 NLGLPRNKSTLEEVDADEIDDADIEDESMEYMDSEFGDHESGDACDILEVLAENCNGSVT 431
Query: 232 DDGEPEADFEDFLEGDHHLDGESNGF-FPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ 290
+ G E E + E ES+G + ++ + + +D E W+Q
Sbjct: 432 EHG-LETHSEKYPE-------ESSGIGYRGQNPTIERAMNGKRISQRD------ESKWVQ 477
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
V+KGTK+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+ + IG+S+KI GVERTRL+VI
Sbjct: 478 VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLVPRGNTIGISKKIAGVERTRLRVI 537
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
AKTLQP+G+GLT+RTVAAGHSL ELQKDLEGLLSTWK+I+EHAKSAALAADEGV+GAVP+
Sbjct: 538 AKTLQPQGYGLTVRTVAAGHSLNELQKDLEGLLSTWKSIIEHAKSAALAADEGVDGAVPV 597
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
+LH+AMGQTLS+VQDYF++KV +VVDSPRTYHEVT+YLQ++AP+LC+RVEL+ R PLF
Sbjct: 598 MLHQAMGQTLSVVQDYFSDKVNSLVVDSPRTYHEVTNYLQEMAPNLCERVELHGTRTPLF 657
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
D++NIEEEINN+LSKRVPL NGG LVIEQTEALVSIDVNGGH + G G+S+E AIL+VNL
Sbjct: 658 DEYNIEEEINNILSKRVPLDNGGYLVIEQTEALVSIDVNGGHCVLGQGTSQEMAILNVNL 717
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AAA+QIARE+RLRDIGGIIVVDFIDM DDSNKRLVYEEVKKAVERDRS VKVSELSRHGL
Sbjct: 718 AAARQIAREIRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVERDRSTVKVSELSRHGL 777
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
MEITRKRVRPSVTFMISEPC CC GTGRVEAL T++SKIE+EI RLL
Sbjct: 778 MEITRKRVRPSVTFMISEPCMCCHGTGRVEALATAYSKIEREICRLL 824
>gi|7160671|emb|CAB76425.1| endoribonuclease E [Arabidopsis thaliana]
Length = 575
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/579 (70%), Positives = 469/579 (81%), Gaps = 18/579 (3%)
Query: 75 STVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNI 134
+T ILINSSICT+QRIAVLE KLVELLLEPVK+NVQCDSVYLGV+TK VP+MGGAFVNI
Sbjct: 1 ATTILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNI 60
Query: 135 GNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTE--DV 192
G++R S MDIK REPFIFPPF +KKQ +GS ++ + ++ + S++ E +
Sbjct: 61 GSARHSFMDIKSNREPFIFPPFCDGSKKQAADGSPILSMNDIPAPHEIEHASYDFEASSL 120
Query: 193 AEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKN-VNGSIIDDGEPEADFEDFLEGDHHLD 251
+ DS D F +DDE + D++ VS+ L VNG++++ G E
Sbjct: 121 LDIDSNDPGESFHDDDDEHEN-DEYHVSDHLAGLVNGTVVNHGAVEV------------- 166
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSK-HTPGEKTWLQVQKGTKVIVQVVKEGLGTKG 310
G NG P + DS S+ K SK + + W+QV+KGTK+IVQVVKEGLGTKG
Sbjct: 167 GSENGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKIIVQVVKEGLGTKG 226
Query: 311 PTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGH 370
PTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVIAKTLQP+GFGLT+RTVAAGH
Sbjct: 227 PTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVIAKTLQPQGFGLTVRTVAAGH 286
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
SLEELQKDL+GLL TWKNI + AKSAALAADEGVEGA+P LLHRAMGQTLS+VQDYFN+K
Sbjct: 287 SLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQDYFNDK 346
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
V+KMVVDSPRTYHEVT YLQD+APDLC+RVEL+DK IPLFD + IEEEI +LSKRVPL
Sbjct: 347 VEKMVVDSPRTYHEVTHYLQDMAPDLCNRVELHDKGIPLFDLYEIEEEIEGILSKRVPLS 406
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+VNLAAA+QIARE+RLRDIGGIIV
Sbjct: 407 NGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLRDIGGIIV 466
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
VDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSRHGLMEITRKRVRPSVTFMISEPC
Sbjct: 467 VDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVTFMISEPC 526
Query: 611 TCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYF 649
+CC TGRVEALET+FSKIEQEI R LVS + YF
Sbjct: 527 SCCHATGRVEALETTFSKIEQEICRQLVSVIISILFCYF 565
>gi|115475892|ref|NP_001061542.1| Os08g0323600 [Oryza sativa Japonica Group]
gi|38637407|dbj|BAD03665.1| putative endoribonuclease E [Oryza sativa Japonica Group]
gi|113623511|dbj|BAF23456.1| Os08g0323600 [Oryza sativa Japonica Group]
gi|222640346|gb|EEE68478.1| hypothetical protein OsJ_26881 [Oryza sativa Japonica Group]
Length = 1085
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/654 (59%), Positives = 474/654 (72%), Gaps = 37/654 (5%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ E+DQP+EEPWLFQS V P K EA + +K + L
Sbjct: 351 IPEQDQPVEEPWLFQSK---------VVAKKPVVQTKGKIEAKDIIRKLRKMDKPPAPLE 401
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
E + + + S VI+INSS+CTMQRIAVLED KLVELLLEP+K+NVQCDS+YLG+VTK
Sbjct: 402 EDKATSGEPS--SRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGIVTK 459
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IG SRPSLM IK R+PF++P K+ N S Y++
Sbjct: 460 LVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFS----------DYND 509
Query: 183 DSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSE------VLKNVNGSIIDDGEP 236
DS T + + D D + E NDDE VSE L N ++I E
Sbjct: 510 DSLP--TYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEF 567
Query: 237 EA----DFEDFLEGDHHLDGESN-GFFPS-KSEVPDDSHT--SHPQGTKDSKHTPGEKTW 288
E+ D E E D H++ E N P +SEV +D T S ++S W
Sbjct: 568 ESISSYDEEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRW 627
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
QV+KGTK++VQVVKEGLG+KGPTL+ +P LRSRFWIL++ +++GVS+KITG+ERTRLK
Sbjct: 628 SQVRKGTKIMVQVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLK 687
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K L+P GF LT RTVAAGHS EELQKDL+ LLSTWK I+EHA+SAALAA+EGVEGAV
Sbjct: 688 GITKLLRPPGFTLTARTVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAV 747
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P++LHR+ GQ LS+VQD FNEKVK++VVDSPRTYHEVT+YLQ++AP+LC+RV+LY+KR P
Sbjct: 748 PVMLHRSKGQALSVVQDDFNEKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTP 807
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+FD++ IE+EI+N+L KRVPL NGGSLVIEQTEALVSIDVNGGH MFG G+S+EKAIL+V
Sbjct: 808 IFDEYKIEKEIDNILCKRVPLHNGGSLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEV 867
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AAKQIARELRLRDIGGIIVVDFIDM DD+NK+LV+EE+KKAVE+DRS V VSELS+
Sbjct: 868 NLEAAKQIARELRLRDIGGIIVVDFIDMTDDTNKKLVFEEMKKAVEKDRSTVGVSELSKL 927
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSY 642
GLMEITRKRVRPSVTFMISEPC CC G GRVEAL+TSFSKIE+EI R L + +
Sbjct: 928 GLMEITRKRVRPSVTFMISEPCPCCHGIGRVEALDTSFSKIEREICRRLAASGH 981
>gi|357145611|ref|XP_003573703.1| PREDICTED: uncharacterized protein LOC100832256 [Brachypodium
distachyon]
Length = 1086
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/643 (59%), Positives = 460/643 (71%), Gaps = 16/643 (2%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ E+ QP+EEPW FQS + K + K + +K M + P
Sbjct: 351 MPEQYQPVEEPWFFQSWAVAKRTGVKTKGKIEAKDSTKKYRKM-----------DKPPAP 399
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
+ S S VILINSSICTMQRIAVLED KLVELLLEP+K+ V CDS+YLG+VTK
Sbjct: 400 SEADTPSTSEHSSRVILINSSICTMQRIAVLEDGKLVELLLEPIKNTVHCDSIYLGIVTK 459
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IG SRPSLM IK R+PF++P K N S +E TYD+
Sbjct: 460 LVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQIVKDNKGGTANDSDYN--DESLPTYDD 517
Query: 183 DSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFED 242
D + E E + D HN E G DF +K ++ + + D +D
Sbjct: 518 DDDIADEEFADEENDDDSATFLAHNVTENEQGMDFVSHSKMKMIDSAEFESVSACDDEKD 577
Query: 243 FLEGDHHLDGESNGFFPS-KSEVPDDSHT--SHPQGTKDSKHTPGEKTWLQVQKGTKVIV 299
DH D ++ P +SE+ +D T S ++S W QV+KGTKV+V
Sbjct: 578 DETDDHVEDEYNDDLVPGDQSEISNDIKTLSSIQHALRESNDDTNGCRWSQVRKGTKVMV 637
Query: 300 QVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGF 359
QVVKEGLGTKGPTL+ +P LRSRFWIL++ +++GVS+KITG+ERTRLK I K L+P GF
Sbjct: 638 QVVKEGLGTKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPVGF 697
Query: 360 GLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQT 419
LT RTVAAGHS EELQKDL+ LLSTWK I EHA+SAALAA+EGVEGAVP++LHR+ GQ
Sbjct: 698 TLTARTVAAGHSWEELQKDLDRLLSTWKGITEHAQSAALAAEEGVEGAVPVMLHRSKGQA 757
Query: 420 LSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEI 479
LSIVQD FNEKVK++VVDSPRTYHEVTSYLQ++AP+LC+RV+LY+KR P+FD++ IE+EI
Sbjct: 758 LSIVQDDFNEKVKRLVVDSPRTYHEVTSYLQEVAPELCNRVDLYEKRTPIFDEYKIEKEI 817
Query: 480 NNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARE 539
+N+L KRV L NGGSL+IEQTEALVSIDVNGGH MFG G+S+E AIL+VNL AAKQIARE
Sbjct: 818 DNILCKRVVLQNGGSLIIEQTEALVSIDVNGGHSMFGQGTSQENAILEVNLEAAKQIARE 877
Query: 540 LRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVR 599
LRLRDIGGIIVVDFIDM D+SNKRLVYEE+KKAVE+DRS V VSELS+ GLMEITRKRVR
Sbjct: 878 LRLRDIGGIIVVDFIDMTDESNKRLVYEEMKKAVEKDRSTVGVSELSKLGLMEITRKRVR 937
Query: 600 PSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSY 642
PSVTFMISEPC CC G GRVEAL+TSFSKIE+EI R L S +
Sbjct: 938 PSVTFMISEPCPCCHGLGRVEALDTSFSKIEREICRRLASSGH 980
>gi|296085058|emb|CBI28473.3| unnamed protein product [Vitis vinifera]
Length = 934
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/440 (78%), Positives = 383/440 (87%), Gaps = 22/440 (5%)
Query: 202 VQFEHNDDEEHD-GDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGES-NGFFP 259
+QF H+D EEH+ DDFDV + K++NGSI+D D E+ N F P
Sbjct: 402 IQFAHDDFEEHEVEDDFDVL-IKKDLNGSIVDH-----------------DSETINNFLP 443
Query: 260 SKSEVP-DDSHTSHPQGTKDSKHTPG-EKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYP 317
+ E DS KDS+ E W QVQKGTK+IVQVVKEGLGTKGPTLTAYP
Sbjct: 444 VELEKGFHDSQLPPLLEMKDSRQAYTVENKWAQVQKGTKIIVQVVKEGLGTKGPTLTAYP 503
Query: 318 KLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQK 377
KLRSRFW+L+T C+RIGVS+KI+GVERTRL+VIAKTLQP+GFGLT+RTVAAGH+LEELQK
Sbjct: 504 KLRSRFWVLLTCCNRIGVSKKISGVERTRLRVIAKTLQPKGFGLTVRTVAAGHTLEELQK 563
Query: 378 DLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVD 437
DLEGLLSTWKNI+EHAKSAALAADEGVEGA+P++LHRAMGQTLS+VQDYFNEKV+ MVVD
Sbjct: 564 DLEGLLSTWKNIVEHAKSAALAADEGVEGAIPVILHRAMGQTLSVVQDYFNEKVESMVVD 623
Query: 438 SPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVI 497
SPRTYHEVT+YLQ+IAPDLCDRVELY+KR+PLFD+FNIEEEINN+LSKRVPLPNGGSLVI
Sbjct: 624 SPRTYHEVTNYLQEIAPDLCDRVELYNKRVPLFDEFNIEEEINNILSKRVPLPNGGSLVI 683
Query: 498 EQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMA 557
EQTEALVSIDVNGGHGM G+G+S+EKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDM
Sbjct: 684 EQTEALVSIDVNGGHGMLGNGTSQEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDML 743
Query: 558 DDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
DDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC+CC GTG
Sbjct: 744 DDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHGTG 803
Query: 618 RVEALETSFSKIEQEISRLL 637
RVEALETSFSKIEQEI RLL
Sbjct: 804 RVEALETSFSKIEQEICRLL 823
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 90/135 (66%), Positives = 106/135 (78%), Gaps = 3/135 (2%)
Query: 2 ALSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLL 61
+S RDQP+EEPWL QSS L+A ++ + +M + + + E L +Q + TE LL
Sbjct: 269 TVSMRDQPVEEPWLLQSS--LIASKEEMVSNMSKNIDAAQVEVSHLKLLDQSYLHTEKLL 326
Query: 62 PEKGS-LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
PE+G+ LISKD+ VSTVILINSSICTMQRIAVLED LVELLLEPVKSNVQCDSVYLGVV
Sbjct: 327 PEEGTNLISKDDSVSTVILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVV 386
Query: 121 TKLVPNMGGAFVNIG 135
TKLVP+MGGAFVNIG
Sbjct: 387 TKLVPHMGGAFVNIG 401
>gi|218200941|gb|EEC83368.1| hypothetical protein OsI_28778 [Oryza sativa Indica Group]
Length = 1036
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 281/404 (69%), Positives = 335/404 (82%), Gaps = 15/404 (3%)
Query: 241 EDFLEGDHHLDGESNGFFPSKSEVPDDSHT--SHPQGTKDSKHTPGEKTWLQVQKGTKVI 298
ED L GD +SEV +D T S ++S W QV+KGTK++
Sbjct: 542 EDLLPGD-------------QSEVSNDLKTLSSIQHALRESSDDTNGSRWSQVRKGTKIM 588
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEG 358
VQVVKEGLG+KGPTL+ +P LRSRFWIL++ +++GVS+KITG+ERTRLK I K L+P G
Sbjct: 589 VQVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPG 648
Query: 359 FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQ 418
F LT RTVAAGHS EELQKDL+ LLSTWK I+EHA+SAALAA+EGVEGAVP++LHR+ GQ
Sbjct: 649 FTLTARTVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAVPVMLHRSKGQ 708
Query: 419 TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEE 478
LS+VQD FNEKVK++VVDSPRTYHEVT+YLQ++AP+LC+RV+LY+KR P+FD++ IE+E
Sbjct: 709 ALSVVQDDFNEKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTPIFDEYKIEKE 768
Query: 479 INNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIAR 538
I+N+L KRVPL NGGSLVIEQTEALVSIDVNGGH MFG G+S+EKAIL+VNL AAKQIAR
Sbjct: 769 IDNILCKRVPLHNGGSLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEVNLEAAKQIAR 828
Query: 539 ELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRV 598
ELRLRDIGGIIVVDFIDM DD+NK+LV+EE+KKAVE+DRS V VSELS+ GLMEITRKRV
Sbjct: 829 ELRLRDIGGIIVVDFIDMTDDTNKKLVFEEMKKAVEKDRSTVGVSELSKLGLMEITRKRV 888
Query: 599 RPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSY 642
RPSVTFMISEPC CC G GRVEAL+TSFSKIE+EI R L + +
Sbjct: 889 RPSVTFMISEPCPCCHGIGRVEALDTSFSKIEREICRRLAASGH 932
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 65/107 (60%), Gaps = 11/107 (10%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ E+DQP+EEPWLFQS + KP + K K EA + +K + L
Sbjct: 351 IPEQDQPVEEPWLFQSKVV------AKKPVVQTKG---KIEAKDIIRKLRKMDKPPAPLE 401
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSN 109
E + + + S VI+INSS+CTMQRIAVLED KLVELLLEP+K+N
Sbjct: 402 EDKATSGEPS--SRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNN 446
>gi|50725997|dbj|BAD33523.1| putative endoribonuclease E [Oryza sativa Japonica Group]
Length = 898
Score = 538 bits (1385), Expect = e-150, Method: Compositional matrix adjust.
Identities = 304/549 (55%), Positives = 380/549 (69%), Gaps = 37/549 (6%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ E+DQP+EEPWLFQS V P K EA + +K + L
Sbjct: 351 IPEQDQPVEEPWLFQSK---------VVAKKPVVQTKGKIEAKDIIRKLRKMDKPPAPLE 401
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
E + + + S VI+INSS+CTMQRIAVLED KLVELLLEP+K+NVQCDS+YLG+VTK
Sbjct: 402 EDKATSGEPS--SRVIVINSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGIVTK 459
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IG SRPSLM IK R+PF++P K+ N S Y++
Sbjct: 460 LVPHMGGAFVDIGLSRPSLMSIKQNRDPFVYPQIVKNAKRDSANFS----------DYND 509
Query: 183 DSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSE------VLKNVNGSIIDDGEP 236
DS T + + D D + E NDDE VSE L N ++I E
Sbjct: 510 DSLP--TYEDEDDDMTDGELADEENDDESSAFPAEVVSENEEHMAFLPNSKINMIHSAEF 567
Query: 237 EA----DFEDFLEGDHHLDGESN-GFFPS-KSEVPDDSHT--SHPQGTKDSKHTPGEKTW 288
E+ D E E D H++ E N P +SEV +D T S ++S W
Sbjct: 568 ESISSYDEEKDDEIDDHMEDEYNEDLLPGDQSEVSNDLKTLSSIQHALRESSDDTNGSRW 627
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
QV+KGTK++VQVVKEGLG+KGPTL+ +P LRSRFWIL++ +++GVS+KITG+ERTRLK
Sbjct: 628 SQVRKGTKIMVQVVKEGLGSKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLK 687
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K L+P GF LT RTVAAGHS EELQKDL+ LLSTWK I+EHA+SAALAA+EGVEGAV
Sbjct: 688 GITKLLRPPGFTLTARTVAAGHSWEELQKDLDRLLSTWKGIIEHAQSAALAAEEGVEGAV 747
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P++LHR+ GQ LS+VQD FNEKVK++VVDSPRTYHEVT+YLQ++AP+LC+RV+LY+KR P
Sbjct: 748 PVMLHRSKGQALSVVQDDFNEKVKRLVVDSPRTYHEVTNYLQEVAPELCNRVDLYEKRTP 807
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+FD++ IE+EI+N+L KRVPL NGGSLVIEQTEALVSIDVNGGH MFG G+S+EKAIL+V
Sbjct: 808 IFDEYKIEKEIDNILCKRVPLHNGGSLVIEQTEALVSIDVNGGHSMFGQGTSQEKAILEV 867
Query: 529 NLAAAKQIA 537
NL AAKQ+
Sbjct: 868 NLEAAKQVC 876
>gi|4689475|gb|AAD27911.1| putative ribonuclease E [Arabidopsis thaliana]
Length = 502
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 274/362 (75%), Positives = 308/362 (85%), Gaps = 9/362 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
V+KGTK+IVQVVKEGLGTKGPTLTAYPKLRSRFW+L+T C RIGVS+KI+GVERTRLKVI
Sbjct: 137 VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIGVSKKISGVERTRLKVI 196
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
AKTLQP+GFGLT+RTVAAGHSLEELQKDL+GLL TWKNI + AKSAALAADEG I
Sbjct: 197 AKTLQPQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGPFQRCYI 256
Query: 411 ---LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI 467
+ H + +T+S+ + Y ++ +VT YLQD+APDLC+RVEL+DK I
Sbjct: 257 EQWVKHYQLCRTISMTRLYIQ------IISLTSISLQVTHYLQDMAPDLCNRVELHDKGI 310
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
PLFD + IEEEI +LSKRVPL NGGSLVIEQTEALVSIDVNGGHGMFG G+S+EKAIL+
Sbjct: 311 PLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILE 370
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
VNLAAA+QIARE+RLRDIGGIIVVDFIDMAD+SNKRLVYEEVKKAVERDRS+VKVSELSR
Sbjct: 371 VNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSR 430
Query: 588 HGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTF 647
HGLMEITRKRVRPSVTFMISEPC+CC TGRVEALET+FSKIEQEI R LVS +
Sbjct: 431 HGLMEITRKRVRPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLVSVIISILFC 490
Query: 648 YF 649
YF
Sbjct: 491 YF 492
Score = 161 bits (408), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 95/117 (81%), Gaps = 2/117 (1%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPV 106
L++D Q Q TE+LLP+ G S+ ++T ILINSSICT+QRIAVLE KLVELLLEPV
Sbjct: 19 LNTDEQNHQLTETLLPDGGFFQSES--IATTILINSSICTVQRIAVLEGGKLVELLLEPV 76
Query: 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQ 163
K+NVQCDSVYLGV+TK VP+MGGAFVNIG++R S MDIK REPFIFPPF +KKQ
Sbjct: 77 KTNVQCDSVYLGVITKFVPHMGGAFVNIGSARHSFMDIKSNREPFIFPPFCDGSKKQ 133
>gi|168003555|ref|XP_001754478.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694580|gb|EDQ80928.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 292/634 (46%), Positives = 413/634 (65%), Gaps = 24/634 (3%)
Query: 8 QPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDT-ESLLPEKGS 66
+P EEPWL +S E++++ + N E EA + + +K ++ L +
Sbjct: 4 KPTEEPWLLESIIATEMDEESLR-EAQSTQNQEVSEAPAIIEEPRKLSPVGDNYLRPDTA 62
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+ K+ V ILIN+S CTMQR+A+LE++K+VE +EPV + VQ ++YLG V +L+P
Sbjct: 63 DVKKEPEVEVEILINTSECTMQRMAILENKKVVEFSIEPVNTKVQVGNIYLGRVKQLLPG 122
Query: 127 MGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTS 186
M G FV+IG R +L+DI + P+ FPP C + S S + + +
Sbjct: 123 MSGVFVDIGGPRLALLDIARNQYPYTFPPV-CGSGNHLSTDSVSGG------SLQDVDLN 175
Query: 187 HNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDD---GEPEADFEDF 243
+ ED + +++ + E D+E++ +D D + + SI+ D GE E +F+D
Sbjct: 176 LSDEDANFTEEEEEEEEEEEEDEEDNKDEDEDEEPYEEGIARSIVVDRVSGEAE-NFKDS 234
Query: 244 LEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVK 303
E + S + P + P + G K SK W V++G +IVQV K
Sbjct: 235 PEEKVQVKKLSKAWEPHRQGSPITVNF----GRKFSK-------WRNVEEGMPIIVQVKK 283
Query: 304 EGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGFGLTI 363
E +G KGP LTA+P L RFW+LI + +GVS +ITG ER RLK++A+ LQPE G+T+
Sbjct: 284 ESMGKKGPRLTAFPSLAGRFWVLIPRGNSVGVSARITGPERRRLKLLAQKLQPEDLGITV 343
Query: 364 RTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIV 423
RT A GH EEL++DL L+ WK IME A +AA+A + G E AVP+LLHR MGQTL+I+
Sbjct: 344 RTEAIGHEQEELERDLTRLMDAWKEIMEKAAAAAVAVERGEEAAVPVLLHREMGQTLTII 403
Query: 424 QDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNML 483
+D F EKV ++VVDS +++ EV +YLQ++AP L +RV LY ++P+FDKFN+E +++
Sbjct: 404 RDLFTEKVSRVVVDSAQSFQEVINYLQEVAPHLMNRVVLYSGKVPIFDKFNVESDLDKFF 463
Query: 484 SKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLR 543
S+RV LPNGG LV+++TEALVSIDVNGG GM GH + +AIL+VNLAAAKQIA E+RLR
Sbjct: 464 SERVKLPNGGYLVMQETEALVSIDVNGGTGMLGHSMKQREAILNVNLAAAKQIAHEIRLR 523
Query: 544 DIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVT 603
DIGGIIVVDFIDM + +++LVYEE+++A++RDRS V +SE+S +GLME+TRKRVRPSVT
Sbjct: 524 DIGGIIVVDFIDMDNHEDEKLVYEEMRRAIQRDRSKVSISEISEYGLMEMTRKRVRPSVT 583
Query: 604 FMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
+ I C CC+GTGRVEALET+ SKIE+ I R+L
Sbjct: 584 YTIHSSCACCKGTGRVEALETTLSKIERAIRRVL 617
>gi|302774831|ref|XP_002970832.1| hypothetical protein SELMODRAFT_94320 [Selaginella moellendorffii]
gi|300161543|gb|EFJ28158.1| hypothetical protein SELMODRAFT_94320 [Selaginella moellendorffii]
Length = 516
Score = 489 bits (1260), Expect = e-135, Method: Compositional matrix adjust.
Identities = 277/573 (48%), Positives = 362/573 (63%), Gaps = 77/573 (13%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
V+ I INSS CTMQRIA++E++KLV+LLLEPV SN Q +VYLGVV +L+P M G FV
Sbjct: 5 VAVEIFINSSECTMQRIAIVENKKLVQLLLEPVNSNFQVGNVYLGVVKQLLPGMNGIFVE 64
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
IG+S RT EVN + ++ + D N
Sbjct: 65 IGSS---------------------RTALLEVN------MHQYPHVFYGDKAQGN----- 92
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
E DG L+N +G +ID E E + +D +
Sbjct: 93 -----------------EEDG--------LRNKDGIVIDVNEEEIE--------ETVD-D 118
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
NG +S D T+ T K W +V++GT ++VQV KE L KGP L
Sbjct: 119 PNGEEMEQS----DGKTNVKPATVLRKI----GAWRKVKRGTLMVVQVKKEALRQKGPQL 170
Query: 314 TAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLE 373
TA L R+W+L+ IGV+RKI G+ER+RLK +A+ LQP GFGLT+RT A G S E
Sbjct: 171 TATVALAGRYWVLVPQVSTIGVTRKINGLERSRLKQLARELQPPGFGLTVRTEAVGRSRE 230
Query: 374 ELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKK 433
EL+KDL L+ TWK+I+E A+ AA A G + VP+LL RAMGQTL V+D FN +V++
Sbjct: 231 ELEKDLARLMETWKSILERAEVAAAA---GGKDPVPVLLQRAMGQTLRTVRDLFNNEVER 287
Query: 434 MVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGG 493
VVDS +TY EVT+YLQ+IAP LCDRVELY + P+F+ FN+E EI SKRV LPNG
Sbjct: 288 FVVDSSQTYQEVTAYLQEIAPHLCDRVELYSGKEPIFEAFNLEAEIEKSSSKRVELPNGA 347
Query: 494 SLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDF 553
LV+E+TEALVSIDVNGG GM G +S+ +A+L+VNLAAA++IA ELRLRDIGGIIVVDF
Sbjct: 348 YLVLEETEALVSIDVNGGVGMLGDATSQREAVLEVNLAAARKIATELRLRDIGGIIVVDF 407
Query: 554 IDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCC 613
IDM D S++RLV+EE++KA+ERDRS V +SE+S GLME+TR R RPSVT +++ C+CC
Sbjct: 408 IDMEDPSHERLVFEEMRKAIERDRSKVVISEISEFGLMEMTRARDRPSVTSRVTDSCSCC 467
Query: 614 QGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GTGR+E++E + SKIE+ + ++LV+ N T
Sbjct: 468 GGTGRIESVEMTLSKIERAVKKILVTSLENFKT 500
>gi|302772292|ref|XP_002969564.1| hypothetical protein SELMODRAFT_91982 [Selaginella moellendorffii]
gi|300163040|gb|EFJ29652.1| hypothetical protein SELMODRAFT_91982 [Selaginella moellendorffii]
Length = 517
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 276/573 (48%), Positives = 362/573 (63%), Gaps = 77/573 (13%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
V+ I INSS CTMQRIA++E++KLV+LLLEPV SN Q +VYLGVV +L+P M G FV
Sbjct: 5 VAVEIFINSSECTMQRIAIVENKKLVQLLLEPVNSNFQVGNVYLGVVKQLLPGMNGIFVE 64
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
IG+S RT EVN + ++ + D N
Sbjct: 65 IGSS---------------------RTALLEVN------MHQYPHVFYGDKAQGN----- 92
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
E DG L+N +G +ID E E + +D +
Sbjct: 93 -----------------EEDG--------LRNKDGIVIDVNEEEIE--------ETVD-D 118
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
NG +S D T+ T K W +V++GT ++VQV KE L KGP L
Sbjct: 119 PNGEEMEQS----DGKTNVKPATVLRKI----GAWRKVKRGTLMVVQVKKEALRQKGPQL 170
Query: 314 TAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLE 373
TA L R+W+L+ IGV+RKI G+ER+RLK +A+ LQP GFGLT+RT A G S E
Sbjct: 171 TATVALAGRYWVLVPQVSTIGVTRKINGLERSRLKQLARELQPPGFGLTVRTEAVGRSRE 230
Query: 374 ELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKK 433
EL+KDL L+ TW++I+E A+ AA A G + VP+LL RAMGQTL V+D FN +V++
Sbjct: 231 ELEKDLARLMETWRSILERAEVAAAA---GGKDPVPVLLQRAMGQTLRTVRDLFNNEVER 287
Query: 434 MVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGG 493
VVDS +TY EVT+YLQ+IAP LCDRVELY + P+F+ FN+E EI SKRV LPNG
Sbjct: 288 FVVDSSQTYQEVTAYLQEIAPHLCDRVELYSGKEPIFEAFNLEAEIEKSSSKRVELPNGA 347
Query: 494 SLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDF 553
LV+E+TEALVSIDVNGG GM G +S+ +A+L+VNLAAA++IA ELRLRDIGGIIVVDF
Sbjct: 348 YLVLEETEALVSIDVNGGVGMLGDATSQREAVLEVNLAAARKIATELRLRDIGGIIVVDF 407
Query: 554 IDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCC 613
IDM D S++RLV+EE++KA+ERDRS V +SE+S GLME+TR R RPSVT +++ C+CC
Sbjct: 408 IDMEDPSHERLVFEEMRKAIERDRSKVVISEISEFGLMEMTRARDRPSVTSRVTDSCSCC 467
Query: 614 QGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GTGR+E++E + SKIE+ + ++LV+ N T
Sbjct: 468 GGTGRIESVEMALSKIERAVKKILVTSLENFKT 500
>gi|414869992|tpg|DAA48549.1| TPA: hypothetical protein ZEAMMB73_776526 [Zea mays]
Length = 693
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 268/487 (55%), Positives = 328/487 (67%), Gaps = 32/487 (6%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ E+ QP+EEPWLFQS IL E V D K EA + +K + + L P
Sbjct: 214 MHEQYQPVEEPWLFQS--ILELNETIVLAD-------GKVEARDIIRKLRKIE--KPLTP 262
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
S + S VIL+NSS+CTMQRIAVLED KLVELLLEP+K+NVQCDS+YLGVVTK
Sbjct: 263 LDESKPTGGEPSSRVILMNSSVCTMQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGVVTK 322
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IG SRPSLM IK R+PF++P K + + EE+ Y+N
Sbjct: 323 LVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQV---FKNRGTDHVGDYCNEENLPAYEN 379
Query: 183 DSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFED 242
D DD+ E D+E HDG F V V N D D +
Sbjct: 380 D---------------DDMSDDEFADEEAHDGSSFPVENVTDNNVDDDEVDSISVYDVDK 424
Query: 243 FLEGDHHLDGESNGFFPS-KSEVPDDSHT--SHPQGTKDSKHTPGEKTWLQVQKGTKVIV 299
E DH D S G +SE+ +D T S ++S W QV+KGTKV+V
Sbjct: 425 DEENDHMEDEYSEGILQGYQSEISNDLKTLSSIQHALRESNDDTNGSRWSQVRKGTKVMV 484
Query: 300 QVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPEGF 359
QVVKEGLGTKGPTL+ +P LRSRFWIL++ +++GVS+KITG+ERTRLK I K L+P GF
Sbjct: 485 QVVKEGLGTKGPTLSPFPCLRSRFWILVSRGNKVGVSKKITGIERTRLKGITKLLRPPGF 544
Query: 360 GLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQT 419
LT RTVAAGHS EELQKDL+GLLSTWK I EHA+SAALAADEGVEGAVP++LHRA GQT
Sbjct: 545 TLTARTVAAGHSWEELQKDLDGLLSTWKGITEHAQSAALAADEGVEGAVPVMLHRAKGQT 604
Query: 420 LSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEI 479
LS+VQD FNEKVK++VVDSPRTYHEVTSYL+++AP+L RVELY+KR P+FD++NIE+EI
Sbjct: 605 LSVVQDDFNEKVKRLVVDSPRTYHEVTSYLEEVAPELYSRVELYEKRKPIFDEYNIEKEI 664
Query: 480 NNMLSKR 486
+N+L KR
Sbjct: 665 DNILCKR 671
>gi|242054377|ref|XP_002456334.1| hypothetical protein SORBIDRAFT_03g034140 [Sorghum bicolor]
gi|241928309|gb|EES01454.1| hypothetical protein SORBIDRAFT_03g034140 [Sorghum bicolor]
Length = 651
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 239/514 (46%), Positives = 299/514 (58%), Gaps = 112/514 (21%)
Query: 3 LSERDQPIEEPWLFQSSPILLAYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLP 62
+ ++DQP+EEPWLFQS + +T+ N K EA + +K + + L
Sbjct: 177 MHQQDQPVEEPWLFQS---MFELNETIV------HANGKTEARDIIGKLRKIEKPPTPLD 227
Query: 63 EKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTK 122
E S S S VIL+NSS+CT+QRIAVLED KLVELLLEP+K+NVQCDS+YLGVVTK
Sbjct: 228 E--SKPSGGEPSSRVILMNSSVCTIQRIAVLEDGKLVELLLEPIKNNVQCDSIYLGVVTK 285
Query: 123 LVPNMGGAFVNIGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDN 182
LVP+MGGAFV+IG SRPSLM IK R+PF++P ++ S EE+ TY+N
Sbjct: 286 LVPHMGGAFVDIGISRPSLMSIKQNRDPFVYPQVFKNRGTDPIDDSYCN--EENLPTYEN 343
Query: 183 DSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEV--------------LKNVNG 228
D DD+ E ++E HDG F V + + NV+G
Sbjct: 344 D---------------DDMSDDEFENEETHDGSSFPVENITDNEEAVVLASDAKINNVDG 388
Query: 229 SIID-------DGEPEADF------EDFLEGDHHLDGESNGFFPSKSEVPDDSHT--SHP 273
D D + E D ED L+GD +SE+ +D T S
Sbjct: 389 DEFDSISVYDEDKDEENDHMEDEYSEDILQGD-------------QSEISNDLKTLSSIQ 435
Query: 274 QGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFW--------- 324
++S W QV+KGTKV+VQV+KEGLGTKGPTL+ +P LRSRFW
Sbjct: 436 HALRESNDDTNGSRWSQVRKGTKVMVQVIKEGLGTKGPTLSPFPCLRSRFWVANNRSSIV 495
Query: 325 ---------------------------------ILITSCDRIGVSRKITGVERTRLKVIA 351
IL++ +++GVS+KITG+ERTRLK I
Sbjct: 496 LFTFHLVPQIKINPHYLQEILGLTSAVYLLSLQILVSRGNKVGVSKKITGIERTRLKGIT 555
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
K L+P GF LT RTVAAGHS EELQKDL+GLLSTWK I EHA+SAALAA+EGVEGAVP++
Sbjct: 556 KLLRPPGFTLTARTVAAGHSWEELQKDLDGLLSTWKGITEHAQSAALAAEEGVEGAVPVM 615
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEV 445
LHRA GQTLS+VQD FNEKVK++VVDSPRTYHEV
Sbjct: 616 LHRAKGQTLSVVQDDFNEKVKRLVVDSPRTYHEV 649
>gi|373458458|ref|ZP_09550225.1| ribonuclease, Rne/Rng family [Caldithrix abyssi DSM 13497]
gi|371720122|gb|EHO41893.1| ribonuclease, Rne/Rng family [Caldithrix abyssi DSM 13497]
Length = 508
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 171/422 (40%), Positives = 244/422 (57%), Gaps = 32/422 (7%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGD-HHLDGESNGFFPSKSEVPDDSHTSHPQGTK 277
VS VL + + ID G + F F + D +LD +F + D+ H
Sbjct: 46 VSRVLPGMQAAFIDIGHEQNAFLHFQDFDASYLD-----YF---VDYEDEEHV------- 90
Query: 278 DSKHTPGEK---TWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D H E+ + ++K ++VQ++KE +GTKG +T L RF +LI IG
Sbjct: 91 DKDHYQTERRFDVYRDLKKNQDILVQIIKEPIGTKGCRVTTGIALPGRFLVLIPGKKHIG 150
Query: 335 VSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VSRKI ER RLK IA+ + P FGL IRTVA G S + ++KDL LL TW I
Sbjct: 151 VSRKIQNPKERRRLKEIARQIMPPNFGLIIRTVAEGKSDKIIRKDLNNLLDTWHKIERKI 210
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
K P LL++ MG S+++D F V ++VVDS + E+++Y++D+A
Sbjct: 211 KRQK----------APTLLYKDMGMASSVIRDLFTSDVDRVVVDSRKLMRELSAYIKDVA 260
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P L +++ Y +P+FD +NIE+EI M + +V L NG +VIEQTEALVSIDVN G
Sbjct: 261 PHLKEKISYYKGTLPIFDYYNIEKEIEKMENSKVWLRNGAYIVIEQTEALVSIDVNSGK- 319
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
F E L +N+ AA++IAR+ RLRD+GGIIV+DFIDM ++ N++ +Y E++K
Sbjct: 320 -FIGSRDHESNSLKINMEAAREIARQARLRDLGGIIVIDFIDMNEEENRKKLYNELRKEF 378
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEI 633
+DRS+ K+ E+SR GL+E+TR+RVRP V F + + C CQGTG V + IE+ I
Sbjct: 379 AKDRSITKIQEISRFGLIEMTRQRVRPPVLFNLKDQCPVCQGTGMVPTVHAVVGNIERWI 438
Query: 634 SR 635
R
Sbjct: 439 QR 440
Score = 48.1 bits (113), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
I+IN++ RIA+LED KLVEL +E + +Y G V++++P M AF++IG+
Sbjct: 5 IIINAT-NEETRIAILEDGKLVELFVERPEYERMVGDIYKGRVSRVLPGMQAAFIDIGHE 63
Query: 138 RPSLMDIKHYREPFI 152
+ + + + + ++
Sbjct: 64 QNAFLHFQDFDASYL 78
>gi|397690718|ref|YP_006527972.1| ribonuclease E and G [Melioribacter roseus P3M]
gi|395812210|gb|AFN74959.1| ribonuclease E and G [Melioribacter roseus P3M]
Length = 516
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 166/460 (36%), Positives = 263/460 (57%), Gaps = 31/460 (6%)
Query: 184 STSHNTEDVAEADSQDDLVQF--EHNDDEEHDGDDF--DVSEVLKNVNGSIIDDGEPEAD 239
ST+ N + E +LV F +H + + G+ + V+ VL + + ID G
Sbjct: 10 STTQNRVAITE---DGNLVDFFVDHPEKQRMVGNIYLGKVARVLPGIRAAFIDIGLKHDA 66
Query: 240 FEDFLE-GDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVI 298
F F + GD G F + G + KH EKT++++ KG +++
Sbjct: 67 FLHFSDIGDR--TEALQGIFDDDDL----DTDENDNGEEKPKHEKKEKTFVRLHKGQEIL 120
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKVIAKTLQPE 357
VQ++KE + KG +T+ + RF +L+ D+IGVS+KIT + ER RL+ IA+ + P+
Sbjct: 121 VQILKEPVKDKGVRVTSSISIPGRFCVLLPMDDKIGVSKKITDIRERKRLRRIARGILPD 180
Query: 358 GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMG 417
GL IRT A E L DL+ L+ WK+I E AK + P LL++ +
Sbjct: 181 NCGLIIRTAAKDQDEEALSADLKYLVKIWKDIEEEAKKQS----------PPALLYKDLS 230
Query: 418 QTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEE 477
T+S+++D F V K+ VDS + + E+ +Y+Q + P L DR+ELY P+F F I+E
Sbjct: 231 TTISVIRDLFTADVSKVFVDSKKLWKEIRNYVQFVQPSLLDRIELYKGEEPIFSTFKIDE 290
Query: 478 EINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAI--LDVNLAAAKQ 535
+I ++ +R+PLP+GG +VIE TEA+ IDVN G + + KE+ + L +L AA++
Sbjct: 291 QIKILMGRRIPLPSGGHIVIEHTEAMTVIDVNSGR----YAAKKEQELNSLKTDLEAARE 346
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
I R+LRLRDIGG+IVVDFID+ D+ N++ +Y+E+KK +DR+ + ++ GLM+ITR
Sbjct: 347 IVRQLRLRDIGGLIVVDFIDLEDEKNRKKIYDELKKEFRKDRAKTALLPMTEFGLMQITR 406
Query: 596 KRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
+RVR ++ ++EPC C GTG + + +IE+ + R
Sbjct: 407 QRVRENIVQSMTEPCPYCNGTGLLTKTSSVIHEIEKWLQR 446
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 79 LINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIG 135
+I S+ T R+A+ ED LV+ ++ + ++YLG V +++P + AF++IG
Sbjct: 5 IIISTSTTQNRVAITEDGNLVDFFVDHPEKQRMVGNIYLGKVARVLPGIRAAFIDIG 61
>gi|325294283|ref|YP_004280797.1| ribonuclease, Rne/Rng family [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325064731|gb|ADY72738.1| ribonuclease, Rne/Rng family [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 508
Score = 269 bits (688), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 144/345 (41%), Positives = 225/345 (65%), Gaps = 13/345 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAK 352
G +V+VQV KE +GTKGP +T + + +L+ + ++IG+SR+IT ER RLK IA+
Sbjct: 119 GQEVLVQVSKEPIGTKGPRITTNITVPGHYLVLLPTVNKIGISRRITDEAERERLKKIAE 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
++PE +G+ +RT A G + E+L+KDLE +L WK ++E A++ P LL
Sbjct: 179 DIKPEDYGIIVRTAAEGATKEDLKKDLEYILRVWKGLLEKAENRP----------PPSLL 228
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
++ + ++D E+V ++++DS + S+ + P L R++ Y K IPLF +
Sbjct: 229 YQDLEIVPKTLRDLLTEEVSEVIIDSKAEFERALSFAKAFIPKLAGRIKYYSKDIPLFQR 288
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F +E+ I LS++V LPNGG +VI++TEALVSIDVN G F + E+ L +NL A
Sbjct: 289 FEVEKAIEKTLSRKVYLPNGGYIVIDETEALVSIDVNSGK--FKKTKTLEETALRINLVA 346
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
AK+IAR+LRLRDIGGIIV+DFIDM ++ NK+L+ + +++ + +DR+ K+ +S GL+E
Sbjct: 347 AKEIARQLRLRDIGGIIVIDFIDMKEEENKQLLLKTLEEELSKDRAKTKIVSMSDLGLVE 406
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
+TRKRV+ S+ ++ C C+G GRV+++ET +IE+EI LL
Sbjct: 407 MTRKRVKKSLGKSLTMTCPYCEGKGRVKSIETVAFEIEREILSLL 451
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
ILIN+ + RIAVLE+ +LVE +E + ++Y G V K+VP + AFV+IG S
Sbjct: 18 ILINAHTKEV-RIAVLEEGELVEFYVERKGNRGIVGNIYKGRVVKIVPAVQAAFVDIGIS 76
Query: 138 RPSLMDIK 145
+ + + +K
Sbjct: 77 KKAFLYVK 84
>gi|226227106|ref|YP_002761212.1| ribonuclease G [Gemmatimonas aurantiaca T-27]
gi|226090297|dbj|BAH38742.1| ribonuclease G [Gemmatimonas aurantiaca T-27]
Length = 520
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 213/348 (61%), Gaps = 14/348 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+++G +++VQ+ KE + TKGP +TA L RF + + ++GVSRKI ER RL+
Sbjct: 114 LKRGQEILVQITKEPISTKGPRVTAQVSLAGRFLVYMPFASKVGVSRKIDERSERQRLRA 173
Query: 350 IAKTLQPE-GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ + P+ G+ +RTV+ + E +++L+ L++ WK I +
Sbjct: 174 MVGEMLPDDAGGVIVRTVSEDATKETFERELQTLINNWKRIKRKTQFTR----------A 223
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+HR T +V+D F+ KV+++ VDS + Y+E+T YLQ IAP+L +RV+LY++ +P
Sbjct: 224 PSLVHRETNVTRGLVRDLFSAKVERVQVDSKQVYNEITEYLQGIAPELVERVKLYEENVP 283
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LFDK IE EI ++ +R LP+GG L+ E TEALVSIDVN G + EK IL
Sbjct: 284 LFDKEGIETEIRDLFKRRCDLPSGGYLIFEPTEALVSIDVNSGR--YTGKRDPEKTILKT 341
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA++IAR+LRLRD+GGIIV DFIDM SN+ V E++ + RDR+ K +S
Sbjct: 342 NTEAAREIARQLRLRDVGGIIVCDFIDMETQSNRDKVLHELRTHLGRDRARTKAFAVSDL 401
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
GL+E+TR+RVR S ++E C C GTGRV ET + E+ + R+
Sbjct: 402 GLVEMTRQRVRQSHWHSMTEGCPTCSGTGRVFTPETIVRRTERAVRRM 449
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
IL+N++ R+A++ED +LVELL++ + VYLG V ++P + AFVNIG
Sbjct: 5 ILVNAT-PRETRVAIIEDGQLVELLVDRPDARRMVGDVYLGKVEAVLPGIQAAFVNIGTE 63
Query: 138 RPSLM 142
+ + +
Sbjct: 64 KSAFL 68
>gi|385809229|ref|YP_005845625.1| ribonucleases G [Ignavibacterium album JCM 16511]
gi|383801277|gb|AFH48357.1| Ribonucleases G [Ignavibacterium album JCM 16511]
Length = 522
Score = 263 bits (671), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 145/384 (37%), Positives = 230/384 (59%), Gaps = 22/384 (5%)
Query: 268 SHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI 327
+H++H G + + P +++KG ++VQ+ KE + KG +T+ L RF +L+
Sbjct: 101 NHSNHSNGESNHQTFPP-----RLKKGQNILVQITKEPVEGKGVRVTSSISLPGRFCVLL 155
Query: 328 TSCDRIGVSRKITGV-ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
++IG+S+KIT ER RLK IA+++ P+ GL IRTVA E L+ DL L+ TW
Sbjct: 156 PFDNKIGISKKITDFRERRRLKQIARSIIPKNCGLIIRTVAKDQPEELLRDDLNHLVRTW 215
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I + AK+ P L+++ + T S+++D V K+ +DS + Y ++
Sbjct: 216 NRIQQAAKTEE----------PPALVYQDLSTTESVIRDLLTPDVSKVFIDSKKLYRQIK 265
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++QD P+L +++ELY + P+F+ F IEE+I ++ ++VPLP+GG L+IE TEA+V I
Sbjct: 266 NFVQDFQPELAEKIELYKSQHPIFEAFKIEEQIKTLMGRKVPLPSGGYLIIEHTEAMVVI 325
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G + +E L +L AA++IAR+LRLRDIGGIIVVDFID+ D+ NK+ VY
Sbjct: 326 DVNSGK--YAKNLEQELNSLKTDLEAAREIARQLRLRDIGGIIVVDFIDLEDERNKKKVY 383
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSF 626
+E+KK +DR+ V + +S GL+EITR+R+R ++ + + C C G+G V T
Sbjct: 384 DELKKEFRKDRAKVSLLPMSDFGLIEITRQRIRQNIMQAMKDVCPVCGGSGFV----TKG 439
Query: 627 SKIEQEISRLLVSKSYNQSTFYFI 650
S + ++ + L N F I
Sbjct: 440 SHLVYDLEKWLKKFRLNSKEFSLI 463
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIG 135
I+INSS R+A+ ED LV+ ++ ++ +YLG + +++P + AFVNIG
Sbjct: 5 IIINSS-SNQTRVAITEDGNLVDFFVDYPENRRMVGDIYLGRIARVLPGIRAAFVNIG 61
>gi|430744096|ref|YP_007203225.1| ribonuclease G and E [Singulisphaera acidiphila DSM 18658]
gi|430015816|gb|AGA27530.1| ribonuclease G and E [Singulisphaera acidiphila DSM 18658]
Length = 1101
Score = 262 bits (669), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 144/383 (37%), Positives = 228/383 (59%), Gaps = 26/383 (6%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVI 350
++G +V+VQV+KE +GTKGPTL+ Y + R+ +L+ +R+GVSRKI +R +L+ I
Sbjct: 688 RRGDEVLVQVIKESIGTKGPTLSTYISIPGRYLVLMPGLNRVGVSRKIADETQRRKLREI 747
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
L P +G G +RT + EL +DL LL WK I+ K A P
Sbjct: 748 MTELNPPKGLGFIVRTAGLERTKRELARDLAYLLRLWKVILRRIKKAK----------TP 797
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
+++ ++D F ++ + +D P + +L+ + P +R++LYD+++PL
Sbjct: 798 APIYQESDMITRTIRDIFTSEIDTIWIDEPAAFERAQEFLKVVMPRFVNRLKLYDEKVPL 857
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F K+ IE+EI + + VPLP GGS+VI+QTEALV+IDVN G+ F + EK ++N
Sbjct: 858 FHKYGIEDEIAKIQRRTVPLPEGGSIVIDQTEALVAIDVNSGN--FRVENDAEKTAYEMN 915
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AAK+IAR+LRLRD+GG+IV DFIDM D+ ++R V + ++ A++RDR+ KV +S G
Sbjct: 916 LRAAKEIARQLRLRDLGGVIVNDFIDMRDERHRRGVEKALRDAIKRDRARTKVLRMSAFG 975
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET---------SFSKIEQEISRLLVSK 640
L+E+TR+R+RPS+ + E C+ C G G V+ +E+ + + +I R+ V
Sbjct: 976 LIEMTRQRIRPSLKRSVYEDCSNCTGAGVVKTVESMSIDVMRLLALASHRDDIRRVSVGV 1035
Query: 641 SYNQSTFYFIRHIPKRRKHLKLE 663
S +T+ R KRR+ ++E
Sbjct: 1036 SQAVATYLNNR---KRREITRIE 1055
>gi|168699596|ref|ZP_02731873.1| ribonuclease E [Gemmata obscuriglobus UQM 2246]
Length = 987
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/369 (39%), Positives = 222/369 (60%), Gaps = 19/369 (5%)
Query: 271 SHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSC 330
S P+G +D + P ++G +VIVQV+KE +GTKGPTL+ Y + R+ +L+ S
Sbjct: 527 SGPKGGRD-RGLPKPPIQEIFKRGQEVIVQVIKEAVGTKGPTLSTYVSIAGRYLVLMPSL 585
Query: 331 DRIGVSRKITGVE-RTRLKVIAKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKN 388
+R+GVSRKI + R RL+ I TL P +G G +RT A +ELQ DL LL W+
Sbjct: 586 NRVGVSRKIEDHDARRRLREIMSTLAPPKGVGFIVRTAAVDRDAKELQNDLAYLLRLWQV 645
Query: 389 IMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSY 448
+++ K A P+ ++R ++D F + + VD + + +
Sbjct: 646 VVKRLKRVA----------GPVEIYRESDMITRTIRDIFTSDIDTIWVDEANAFGHASEF 695
Query: 449 LQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDV 508
LQ + P +R++ +D PLF K++IEEEI + KR+ +P GGSLVIEQTEALV+IDV
Sbjct: 696 LQIVMPKFANRIKHFDHTEPLFHKYSIEEEIAKIHQKRIEMPLGGSLVIEQTEALVAIDV 755
Query: 509 NGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEE 568
N G+ F ++ E+ +NL AAK+IAR+LRLRD+GG+IV DFIDM +S++R V +
Sbjct: 756 NSGN--FRADNNAEETAFQMNLHAAKEIARQLRLRDLGGVIVNDFIDMRSESHRRKVEDA 813
Query: 569 VKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSK 628
++A+ RDR+ K+ +S+ GL+E+TR+R+RPS+ I C C+G G V+ E+
Sbjct: 814 FREALRRDRARTKILRISQFGLIEMTRQRIRPSLKRSIFADCPHCRGNGFVKTSES---- 869
Query: 629 IEQEISRLL 637
+ E+ RLL
Sbjct: 870 LAIEVMRLL 878
>gi|374850705|dbj|BAL53687.1| hypothetical conserved protein [uncultured planctomycete]
Length = 639
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 215/348 (61%), Gaps = 18/348 (5%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVI 350
++G +V+VQV+KEG+GTKGPTL+ Y + R+ +L+ RIGVSRKIT +R +L+ I
Sbjct: 235 RRGQEVLVQVIKEGIGTKGPTLSTYISIPGRYLVLMPGLQRIGVSRKITDEQQRRKLRQI 294
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ L P +G G IRT + +ELQ+DL L WK ++ + P
Sbjct: 295 LQELHPPKGLGFIIRTAGLDRTKKELQRDLAYLSRVWKVVIRRVRKTK----------AP 344
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L+++ + ++D F+ V + VD P Y +LQ + P +R++LY + PL
Sbjct: 345 GLIYQESDMIIRTIRDVFDSNVATIWVDEPHAYEHAREFLQIVMPRYANRLKLYAENEPL 404
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F ++ IE+EI + S+RV LP G S+VI+ TEALV++DVN G+ F + E+ VN
Sbjct: 405 FHRYGIEKEIARVQSRRVLLPGGASIVIDTTEALVAVDVNSGN--FRADNDAEQTAYQVN 462
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
LAAAK+IAR+LRLRD+GG+I++DFIDM ++ +KR V +++AV+RDR+ K+ +S
Sbjct: 463 LAAAKEIARQLRLRDLGGVIIIDFIDMREEHHKREVERVLREAVKRDRARTKILRMSPFC 522
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
++E+TR+R+RPS+ + E C C GTG+V+ E+ + EI RLL
Sbjct: 523 IVEMTRQRMRPSLKRSVFEDCPWCHGTGQVKTAES----MSLEIMRLL 566
>gi|319789105|ref|YP_004150738.1| ribonuclease, Rne/Rng family [Thermovibrio ammonificans HB-1]
gi|317113607|gb|ADU96097.1| ribonuclease, Rne/Rng family [Thermovibrio ammonificans HB-1]
Length = 500
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 141/345 (40%), Positives = 221/345 (64%), Gaps = 13/345 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAK 352
G +++VQV KE +GTKGP +T + + +L+ + +++G+SR+IT ER RLK IA
Sbjct: 110 GQELLVQVAKEPIGTKGPRVTTNITIPGHYLVLLPTINKLGLSRRITDEAERERLKEIAS 169
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
++P +GL +RT A G S EEL+KDL +L W+ + E A+ P LL
Sbjct: 170 EIKPPEYGLIVRTAAEGASKEELEKDLNYILKVWEGLKEKAQRRP----------PPTLL 219
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
++ + ++D E+V ++++DS + S+ + P L DR++LY+ +IPLF+K
Sbjct: 220 YQDLEIVPKTLRDLLTEEVTEVIIDSRSEFERALSFTKGFIPKLADRIKLYEGKIPLFEK 279
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F +E+ I LS++V LP GG +VI++TEALVSIDVN G F S+ E+ L++NL A
Sbjct: 280 FQVEKAIEKALSRKVYLPGGGYIVIDETEALVSIDVNSGK--FKKSSTLEETALEINLKA 337
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A++IAR+LRLRDIGGIIV+DFIDM + NK L+ + +++ + +DR+ K+ +S GL+E
Sbjct: 338 AREIARQLRLRDIGGIIVIDFIDMKEPENKELLLKTLEEELSKDRARTKIVSMSDLGLVE 397
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
+TRKRV+ S+ ++ C C+G GRV++ ET +IE+E+ L
Sbjct: 398 MTRKRVKKSLGKTLTVTCPYCEGRGRVKSPETVAFEIERELLSFL 442
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
ILINSS + RIAVLE+ +LVE +E + ++Y G VTK+VP + AFV+IG S
Sbjct: 14 ILINSSTKEV-RIAVLEEGELVEFYVERKGNRGLVGNIYKGKVTKIVPAVQAAFVDIGES 72
Query: 138 RPSLMDIK 145
R + + +K
Sbjct: 73 RSAFLYVK 80
>gi|311745200|ref|ZP_07718985.1| ribonuclease G [Algoriphagus sp. PR1]
gi|126577723|gb|EAZ81943.1| ribonuclease G [Algoriphagus sp. PR1]
Length = 523
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 168/476 (35%), Positives = 258/476 (54%), Gaps = 34/476 (7%)
Query: 205 EHNDDEEHDGDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKS 262
E D++ GD + V +++ +N + ID G + F + L N
Sbjct: 30 EGMDNQFKVGDIYLGTVRKIVNGLNAAFIDVGYEKDAFLHY----QDLGPNFNSLMKFTK 85
Query: 263 EVPDDSHTSHPQGTKDSKHTP-----GEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYP 317
V +++++S+ K ++ P G+ + + + K +V+VQVVKE + TKGP L+
Sbjct: 86 MVRNNNYSSY--NLKGFENVPEIDKIGKISSI-LSKNNQVLVQVVKEPISTKGPRLSCEL 142
Query: 318 KLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQ 376
L R+ +L+ D + VS+KI + ER RL + +++P FG+ IRTVA G S+ EL
Sbjct: 143 SLPGRYLVLVPFSDSVNVSKKIRSSDERKRLLRLINSIKPANFGVIIRTVAEGQSVTELD 202
Query: 377 KDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVV 436
KDL LL+ W+ M+ A + + V G M S+V+D NE + V
Sbjct: 203 KDLRNLLNNWEEGMQKLLKAK--SRDKVIGE--------MSMASSLVRDLLNESFDAITV 252
Query: 437 DSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLV 496
+ TY ++ SY++ IAP+ V LY+ + LF+ F IE++I ++ + V LP GG ++
Sbjct: 253 EEESTYDQIRSYIRSIAPEKEKIVRLYNGKAKLFENFGIEKQIKSLFGQTVSLPQGGYVI 312
Query: 497 IEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDM 556
IE TEAL IDVN G+ S +E L NL AAK+IAR+LRLRD+GGIIVVDFIDM
Sbjct: 313 IEHTEALHVIDVNSGNKS-NQESDQESTALKTNLVAAKEIARQLRLRDMGGIIVVDFIDM 371
Query: 557 ADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGT 616
NK+++YE +K+ ++ DRS V LS+ GLM+ITR+RVRP V + E C C GT
Sbjct: 372 RKAENKKVIYEAMKEELKMDRSKHTVLPLSKFGLMQITRQRVRPEVNIVTKETCPACNGT 431
Query: 617 GRVEALETSFSKIEQEISRLLVSKSYNQSTF--------YFIRHIPKRRKHLKLEY 664
G+++A K+E+++ + ++ +Q YF I RR +Y
Sbjct: 432 GKIQASILVADKLEKDLEHIATIQNVSQIHIGLHPYLHAYFTTGIISRRVKWFFKY 487
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST +LI+S+ + RIA+L+D+ LVEL E + + + +YLG V K+V + AF++
Sbjct: 1 MSTELLIDSA-QSGSRIALLQDKSLVELHSEGMDNQFKVGDIYLGTVRKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTK 161
+G + + + HY++ + P F K
Sbjct: 60 VGYEKDAFL---HYQD--LGPNFNSLMK 82
>gi|406831021|ref|ZP_11090615.1| ribonuclease, Rne/Rng family protein [Schlesneria paludicola DSM
18645]
Length = 532
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 223/370 (60%), Gaps = 20/370 (5%)
Query: 276 TKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRI 333
TK ++ + K +Q +++G++V+VQV+K +G+KGPTL+ Y + R+ +L+ R+
Sbjct: 103 TKFNERSVRNKPQIQDILKRGSEVLVQVIKGAIGSKGPTLSTYISIPGRYLVLMPGLQRV 162
Query: 334 GVSRKITGVE-RTRLKVIAKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391
GVSRKI + R RLK I + L P EG G IRT S +LQ+DL LL WK I+
Sbjct: 163 GVSRKIADDDARKRLKRILRDLSPPEGLGFIIRTAGVDRSQADLQRDLNYLLRLWKVIVS 222
Query: 392 HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQD 451
K + P+ ++ ++D + ++ + +D PR Y +++
Sbjct: 223 RVK----------KFPAPVDIYEESDMITRTIRDIYTSEIDAIWIDEPRAYERACEFMKI 272
Query: 452 IAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGG 511
+ P DRV LYD R P+F++ +IE+EI + S+ VPL GGS+VI+QTEALV+IDVN G
Sbjct: 273 VLPRHVDRVRLYDGREPIFEQHDIEQEITRIQSRHVPLKGGGSIVIDQTEALVAIDVNSG 332
Query: 512 HGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKK 571
+ F E+ VNL AA++I+R++RLRD+GG+IV DFIDM D+ ++R V +
Sbjct: 333 N--FRMDDDPEENAYQVNLRAAEEISRQIRLRDLGGVIVNDFIDMRDEKHRRGVERALHH 390
Query: 572 AVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQ 631
AV+RDR+ K+ +S GL+E+TR+R+RPS+ + E C CC GT +V+ E+ +
Sbjct: 391 AVKRDRARTKILNISPFGLIEMTRQRIRPSLRRSVYEDCPCCSGTAQVKTAES----MAI 446
Query: 632 EISRLLVSKS 641
++ RLL+S +
Sbjct: 447 DVMRLLMSHA 456
>gi|296120629|ref|YP_003628407.1| ribonuclease, Rne/Rng family [Planctomyces limnophilus DSM 3776]
gi|296012969|gb|ADG66208.1| ribonuclease, Rne/Rng family [Planctomyces limnophilus DSM 3776]
Length = 537
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 138/358 (38%), Positives = 213/358 (59%), Gaps = 23/358 (6%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVI 350
++G++V++QV+KEG+G KGPTL+ Y + R+ +L+ R+GVSRKI R RL+
Sbjct: 126 RRGSEVLIQVIKEGIGNKGPTLSTYISIPGRYLVLMPGLQRVGVSRKIGDDSIRRRLRQQ 185
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
K L P EG G IRT S ++LQ+D+ LL W I++ + P
Sbjct: 186 LKELSPPEGLGFIIRTAGIDRSQKDLQRDMNYLLRLWNVIVKRIRKFP----------AP 235
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
+ ++ + ++D +N +++ + +D PR Y +++ + P DRV+LYD + PL
Sbjct: 236 VDIYEESDMMIRTIRDIYNSEIENIWIDEPRAYERAKEFMKIVLPRAVDRVQLYDGKEPL 295
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F K +EEEI + + VPL GGS+VI+QTEALV+IDVN G F + E+ +N
Sbjct: 296 FHKHGVEEEIARIQRRHVPLKGGGSIVIDQTEALVAIDVNSGS--FRQDENAEENAYQMN 353
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++IAR++RLRD+GG+IV DFIDM ++ ++R V + AV RDR+ K+ S G
Sbjct: 354 LRAAEEIARQIRLRDLGGVIVNDFIDMREERHRRGVERALADAVARDRARTKILRTSPFG 413
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET---------SFSKIEQEISRLLV 638
L+E+TR+R+RPS+ + E C CC GTG+V+ E+ F QE++R++V
Sbjct: 414 LVEMTRQRIRPSLRRSVYEDCPCCAGTGQVKTAESMAIEVMRLLMFHANHQEVTRIVV 471
>gi|313676684|ref|YP_004054680.1| ribonuclease, rne/rng family [Marivirga tractuosa DSM 4126]
gi|312943382|gb|ADR22572.1| ribonuclease, Rne/Rng family [Marivirga tractuosa DSM 4126]
Length = 517
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 162/455 (35%), Positives = 254/455 (55%), Gaps = 34/455 (7%)
Query: 200 DLVQFEHNDDEEHD--GDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESN 255
+L++ +++ EE GD + +V +V++ +N + +D G + F + H L + N
Sbjct: 23 NLIEIHYDNKEEQFSVGDIYLGNVRKVMQGLNAAFVDVGYEKDAFLHY----HDLGPKVN 78
Query: 256 GFFPSKSEVPDDSHTSH--------PQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLG 307
++TS+ P+ K K + + K +V+VQV+KE +
Sbjct: 79 SLLKYTKFATTRNNTSYKLSKFKLEPEIDKLGKISQ------VLSKNKQVLVQVIKEPIS 132
Query: 308 TKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTV 366
TKGP L+ L R+ +L+ + I +S+KI T ER RL + +++PE FG+ IRTV
Sbjct: 133 TKGPRLSCELSLAGRYLVLVPFANGISISKKISTSEERKRLTRLISSIKPENFGVIIRTV 192
Query: 367 AAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDY 426
A G + EL DL LL TW+N ++ K A + + G V G+ SI++D
Sbjct: 193 AEGKEVAELDTDLRNLLDTWENGVKKLKDAK--PKDKIIGEV--------GRASSILRDM 242
Query: 427 FNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKR 486
NE + VD T+ E+ +Y+Q I P ++LY R +F+ F IE ++ ++ +
Sbjct: 243 MNESFDSIHVDDEETFKEIQTYIQKIDPSKEKILKLYTGRNKIFEHFGIERQLKSLFGQS 302
Query: 487 VPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIG 546
V + GG L+IE TEAL +DVN G+ G S+E L+ NL AAK+IAR+LRLRD+G
Sbjct: 303 VNVKGGGYLIIEHTEALHVVDVNSGNKSSGE-ESQEDTALNTNLEAAKEIARQLRLRDMG 361
Query: 547 GIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMI 606
GIIVVDFIDM + NK+L+++++K+ +E DRS V LS+ GLM++TR+RVRP + +
Sbjct: 362 GIIVVDFIDMKNPDNKKLLFKKMKEFMETDRSKHTVLPLSKFGLMQVTRQRVRPELNIVT 421
Query: 607 SEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKS 641
E C C GTG++ A KIEQ++ LL ++
Sbjct: 422 KESCPTCNGTGKITASILVSDKIEQDLDYLLTKQN 456
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S ++INS+ RIA+L D L+E+ + + +YLG V K++ + AFV+
Sbjct: 1 MSNELIINST-QNGSRIALLNDRNLIEIHYDNKEEQFSVGDIYLGNVRKVMQGLNAAFVD 59
Query: 134 IGNSRPSLMDIKHYRE 149
+G + + + HY +
Sbjct: 60 VGYEKDAFL---HYHD 72
>gi|431796628|ref|YP_007223532.1| Rne/Rng family ribonuclease [Echinicola vietnamensis DSM 17526]
gi|430787393|gb|AGA77522.1| ribonuclease, Rne/Rng family [Echinicola vietnamensis DSM 17526]
Length = 523
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 161/437 (36%), Positives = 243/437 (55%), Gaps = 25/437 (5%)
Query: 206 HNDDEEHD---GDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPS 260
H+D+E + GD + V +++ +N ID G + F + L +
Sbjct: 28 HSDEENNQFKVGDMYLGTVRKIVNGLNAGFIDVGYEKDAFLHY----QDLGPKVKSLIKY 83
Query: 261 KSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQV-QKGTKVIVQVVKEGLGTKGPTLTAYP 317
++ ++ H+ HP +G K QV K +++VQVVKE + TKGP L+
Sbjct: 84 TKQIRNN-HSEHPTLKGFKLEPEIEKLGKISQVLSKNNQILVQVVKEPISTKGPRLSCEL 142
Query: 318 KLRSRFWILITSCDRIGVSRKITGVE-RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQ 376
L R+ +L+ + + VS+KI E R RL + +++PE FG+ IRTVA S+ EL
Sbjct: 143 SLAGRYLVLVPFSNAVNVSKKIRKAEERRRLARLITSIKPENFGVIIRTVAESQSVTELD 202
Query: 377 KDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVV 436
KDL L++TW++ M+ A + + V G M SIV+D NE + V
Sbjct: 203 KDLRNLVNTWEDGMKKLMKAK--SKDKVIGE--------MSMASSIVRDLLNESFDAITV 252
Query: 437 DSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLV 496
+ Y ++ SY++ IAP+ V+LY+ + LF+ F IE++I ++ + V LP+GG L+
Sbjct: 253 EDELIYDQIRSYIRSIAPEKEKIVKLYNGKAKLFESFGIEKQIKSLFGQSVSLPHGGYLI 312
Query: 497 IEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDM 556
IE TEAL IDVN G+ S +E L NL A K+IAR+LRLRD+GGIIV+DFIDM
Sbjct: 313 IEHTEALHVIDVNSGNKS-NQESDQETTALKTNLVAVKEIARQLRLRDMGGIIVIDFIDM 371
Query: 557 ADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGT 616
NKR VY+ +K A++ DRS V L++ GLM+ITR+RVRP V + E C C GT
Sbjct: 372 KKADNKRAVYDAMKTAMKEDRSKNTVLPLTKFGLMQITRQRVRPEVNIVTKETCPSCNGT 431
Query: 617 GRVEALETSFSKIEQEI 633
G+++A K+E+++
Sbjct: 432 GKIQASILVADKLERDL 448
>gi|325981764|ref|YP_004294166.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212]
gi|325531283|gb|ADZ26004.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. AL212]
Length = 837
Score = 257 bits (657), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 157/419 (37%), Positives = 235/419 (56%), Gaps = 37/419 (8%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ V K N+ ++I EP EA F D+ E +GF P K P
Sbjct: 26 DLDIESVSKEQRKSNIYKAVITRVEPSLEAAFVDY-------GCERHGFLPFKEIAPSCF 78
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
S TP + +Q+G ++IVQV K+ GTKG LT Y L R+ +LI
Sbjct: 79 SESG---------TPNARIQDLLQEGQELIVQVDKDERGTKGAALTTYISLAGRYLVLIP 129
Query: 328 TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + GVSR+ITG ER L+ VIAK P G + RT G S EELQ DL L W
Sbjct: 130 NNSNSGGVSRRITGEERNDLREVIAKLEIPTGMSIIARTAGIGRSKEELQWDLNYLTQLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I E A + +GV L+++ + ++DYF++++ ++++DS Y + +
Sbjct: 190 YAIEEAANN-----QDGV-----FLIYQESSLVIRAIRDYFSQEIGEILIDSRDIYEQAS 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P DR++ Y +PLF +F IE +I S++V LP+GG++VI+ TEALVS+
Sbjct: 240 QFMAHVMPANVDRLKFYHDDVPLFSRFQIEHQIETAYSRQVSLPSGGAIVIDHTEALVSV 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN + G E L+ NL AA +IAR+LRLRD+GG+IV+DFIDM N+R V
Sbjct: 300 DVNSARAI--RGLDIEHTALNTNLEAADEIARQLRLRDLGGLIVIDFIDMDVQRNQREVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
+ +A+ +DR+ ++V ++SR GL+E++R+R+RPS+ PCT CQGTG + ++S
Sbjct: 358 ARLHEALRQDRARIQVGKISRFGLLELSRQRLRPSLGESNYIPCTRCQGTGFIRGTDSS 416
Score = 38.9 bits (89), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A++ + L++L +E V + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQPEELRVAIVNGQTLIDLDIESVSKEQRKSNIYKAVITRVEPSLEAAFVDYGCE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|320102650|ref|YP_004178241.1| ribonuclease, Rne/Rng family [Isosphaera pallida ATCC 43644]
gi|319749932|gb|ADV61692.1| ribonuclease, Rne/Rng family [Isosphaera pallida ATCC 43644]
Length = 1473
Score = 256 bits (655), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 212/349 (60%), Gaps = 18/349 (5%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVI 350
++G +VIVQV+KE +G KGPTL+ Y + R+ +L+ +R+GVSRKI +R +LK I
Sbjct: 1027 RRGDEVIVQVIKESIGNKGPTLSTYISIPGRYLVLMPGLNRVGVSRKINDEAQRRKLKEI 1086
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ L P G +RT + +EL +D+ LL WK I+ K P
Sbjct: 1087 MEELNPPNNLGFIVRTAGVDRTKKELARDMAYLLRLWKAILRRIKRTQ----------AP 1136
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
++++ ++D F++ + + +D + Y +LQ++ P DR++LY+ + PL
Sbjct: 1137 AVIYQESDMITRTIRDVFSDDIDTIWIDERQAYEHAREFLQNVMPRYVDRLKLYEGKTPL 1196
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + +EEEI + K VPLP GGS++IE TEALV+IDVN G+ F + EK + N
Sbjct: 1197 FHLYGLEEEIQRIHRKHVPLPGGGSIIIEPTEALVAIDVNSGN--FRVENDAEKTAYETN 1254
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AAK+IAR+LRLRD+GG+I+ DFIDM ++ ++R V +++A++RDR+ KV +S+ G
Sbjct: 1255 LRAAKEIARQLRLRDLGGVIINDFIDMREEKHRRGVERALREAIKRDRARTKVLRMSQFG 1314
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLV 638
++E+TR+R+RPS+ + + C CQGTG ++ E+ + E+ RLL
Sbjct: 1315 IIEMTRQRIRPSLKRSVYQDCPHCQGTGLIKTPES----LSIEVMRLLA 1359
>gi|440748074|ref|ZP_20927328.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Mariniradius saccharolyticus AK6]
gi|436483278|gb|ELP39332.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Mariniradius saccharolyticus AK6]
Length = 523
Score = 255 bits (651), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 139/346 (40%), Positives = 210/346 (60%), Gaps = 12/346 (3%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIA 351
KG +V+VQVVKE + TKGP L+ + R+ +L+ D + VS+KI + ER RL +
Sbjct: 118 KGNQVLVQVVKEPISTKGPRLSCELSIAGRYLVLVPFSDTVNVSKKIRSAEERKRLVRLI 177
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
+++P FG+ IRTVA G S+ EL KDL LL+TW+ M+ A +G ++
Sbjct: 178 TSIKPANFGVIIRTVAEGQSVTELDKDLRNLLTTWEEGMKKLLKA--------KGRDKVI 229
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+M SI++D NE + V+ Y ++ SY++ IAP+ V+LY+ + LF+
Sbjct: 230 GEMSMAS--SIIRDLLNESFDAITVEDELVYDQIRSYIRSIAPEKEKIVKLYNGKAKLFE 287
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F IE++I ++ + + LP GG L+IE TEAL IDVN G+ S +E L NL
Sbjct: 288 SFGIEKQIKSLFGQTISLPQGGYLIIEHTEALHVIDVNSGNKS-NQESDQETTALKTNLV 346
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AAK+IAR+LRLRD+GGIIV+DFIDM NK+ +Y+ ++ ++ DRS V LS+ GLM
Sbjct: 347 AAKEIARQLRLRDMGGIIVIDFIDMKKAENKKAIYDAMRDVMKDDRSKHTVLPLSKFGLM 406
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
+ITR+RVRP V + E C C GTG+++A ++E+++ ++
Sbjct: 407 QITRQRVRPEVNIVTKETCPACNGTGKIQASILVADQLEKDLEHMV 452
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST ++I+SS RIA+L+D+ LVE+ E ++ + +YLG V K+V + AF++
Sbjct: 1 MSTELVIDSS-QNGSRIALLKDKNLVEIHSEGGENQFKVGDIYLGTVRKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYRE 149
+G + + + HY++
Sbjct: 60 VGYEKDAFL---HYQD 72
>gi|410031244|ref|ZP_11281074.1| ribonuclease, Rne/Rng family protein [Marinilabilia sp. AK2]
Length = 523
Score = 255 bits (651), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 211/347 (60%), Gaps = 12/347 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
+ K +V+VQVVKE + TKGP L+ + R+ +L+ D + VS+KI ER RL
Sbjct: 116 LSKNNQVLVQVVKEPISTKGPRLSCELSIAGRYLVLVPFSDTVNVSKKIRSADERKRLVR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P FG+ IRTVA G S+ EL KDL LL+TW++ M+ LA +G + +
Sbjct: 176 LITSIKPSNFGVIIRTVAEGQSVTELDKDLRNLLNTWEDGMKK-----LAKAKGRDKVIG 230
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
M SI++D NE + V+ Y ++ SY++ IAP+ V+LY+ + L
Sbjct: 231 -----EMSMASSIIRDLLNESFDAITVEDELIYDQIRSYIRSIAPEKEKIVKLYNGKAKL 285
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+ F IE++I ++ + + LP GG ++IE TEAL IDVN G+ S +E L N
Sbjct: 286 FENFGIEKQIKSLFGQTISLPQGGYVIIEHTEALHVIDVNSGNKS-NQESDQENTALKTN 344
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L A K+IAR+LRLRD+GGIIVVDFIDM NK+++Y+ +++A++ DRS V L++ G
Sbjct: 345 LVAVKEIARQLRLRDMGGIIVVDFIDMKKAENKKVIYDAMREAMKDDRSKHTVLPLTKFG 404
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
LM+ITR+RVRP V + E C C GTG+++A K+E+++ +
Sbjct: 405 LMQITRQRVRPEVNIVTKETCPSCGGTGKIQASILVADKLEKDLEHI 451
Score = 46.2 bits (108), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST +LI+S + RIA+L+D+ LVEL E ++ + +YLG V K+V + AF++
Sbjct: 1 MSTELLIDS-VQNGSRIALLKDKSLVELHSEGGENQFKVGDIYLGTVRKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYRE 149
+G + + + HY++
Sbjct: 60 VGYEKDAFL---HYQD 72
>gi|421855140|ref|ZP_16287521.1| ribonuclease E [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|403189458|dbj|GAB73722.1| ribonuclease E [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 1169
Score = 254 bits (650), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 202/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGAVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 MLASLDVPRGMSVIVRTAGIGRSQEELQTDLQHLLDLWTQIQSTANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVSEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALST 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG+IV+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLIVIDFIDMTRDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|114331691|ref|YP_747913.1| ribonuclease, Rne/Rng family protein [Nitrosomonas eutropha C91]
gi|114308705|gb|ABI59948.1| RNAse E [Nitrosomonas eutropha C91]
Length = 849
Score = 254 bits (650), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 149/405 (36%), Positives = 232/405 (57%), Gaps = 31/405 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ + + EP EA F D+ G H GF P K P T + T+ S H
Sbjct: 40 NIYKAAVTRLEPSLEAAFVDYGAGRH-------GFLPYKEIAP----TCFDKNTERSSHR 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
GE +++G ++IVQV K+ G KG LT Y L R+ +L+ + + G +SR+++
Sbjct: 89 IGEL----LREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSA 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ + LQ P+G + RT G + EELQ DL L+ W+ I A ++
Sbjct: 145 EERAELREVINHLQVPDGMSIIARTAGIGRNEEELQWDLNYLVQLWRAI-----EGAASS 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ GV L+++ + ++DYF+ ++ ++++D+P Y + ++ ++ P DR+
Sbjct: 200 ERGV-----FLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAYQFMANVMPANVDRL 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY IPLF +F IE +I S++V LP+GGS+VI+ TEALVSIDVN + GS
Sbjct: 255 KLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDVNSARAI--RGSD 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E L+ NL AA +IAR+LRLRD+GG++VVDFIDM N+R V + KA+ DR+ V
Sbjct: 313 IENTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVETNLLKALRLDRARV 372
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ ++SR GL+E++R+R+RPS+ PC C GTG + ++S
Sbjct: 373 QIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSS 417
Score = 39.3 bits (90), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + + ++Y VT+L P++ AFV+ G
Sbjct: 4 MLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYGAG 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPYK 71
>gi|421464743|ref|ZP_15913433.1| ribonuclease E/G family protein [Acinetobacter radioresistens
WC-A-157]
gi|400205496|gb|EJO36477.1| ribonuclease E/G family protein [Acinetobacter radioresistens
WC-A-157]
Length = 1169
Score = 254 bits (650), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 202/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGAVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 MLASLDVPRGMSVIVRTAGIGRSQEELQTDLQHLLDLWTQIQSTANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVSEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALST 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG+IV+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLIVIDFIDMTRDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|255321252|ref|ZP_05362418.1| ribonuclease E [Acinetobacter radioresistens SK82]
gi|262380062|ref|ZP_06073217.1| ribonuclease E [Acinetobacter radioresistens SH164]
gi|255301806|gb|EET81057.1| ribonuclease E [Acinetobacter radioresistens SK82]
gi|262298256|gb|EEY86170.1| ribonuclease E [Acinetobacter radioresistens SH164]
Length = 1170
Score = 254 bits (650), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 133/336 (39%), Positives = 202/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGAVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 MLASLDVPRGMSVIVRTAGIGRSQEELQTDLQHLLDLWTQIQSTANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVSEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALST 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG+IV+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLIVIDFIDMTRDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|149911609|ref|ZP_01900221.1| ribonuclease E [Moritella sp. PE36]
gi|149805330|gb|EDM65343.1| ribonuclease E [Moritella sp. PE36]
Length = 1125
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 158/439 (35%), Positives = 238/439 (54%), Gaps = 41/439 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + S QGT + P K + +GT+
Sbjct: 51 EAAFVDY-GADRH------GFLPLK----EISRAYFKQGTGKQRGRPSIKDV--IAEGTE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 98 VIVQIEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKTALATLE 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEG GL +RT G S EEL DL+ LL+ W+ I + AK +G L+H+
Sbjct: 158 LPEGMGLIVRTAGVGKSAEELDWDLKVLLNHWQAIQDSAKD-----RQGT-----FLIHQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
++DY + ++++D P+ + E + ++ I PD DR++LY +PLF+ +
Sbjct: 208 ESNVIARAIRDYLRRDIGEILIDHPKAFEEAKNRIKLIRPDFIDRIKLYQGDVPLFNHYQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SIDVN G E+ L NL AA
Sbjct: 268 IETQIESAFQREVRLPSGGSIVIDPTEALTSIDVNSARAT--RGGDIEETALTTNLEAAD 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
++AR+LRLRD+GG++V+DFIDM N+R V ++ AV +DR+ +++ +SR GLME++
Sbjct: 326 EVARQLRLRDLGGLVVIDFIDMGPVKNQREVENCLRDAVRQDRARIQLGRISRFGLMEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+RPS+ + C C G G + E+ + I RL+ +S ++T + + +P
Sbjct: 386 RQRIRPSLGESSTHVCPRCDGQGTIRDNES----LALSILRLIEEESLKENTNHIVAQVP 441
Query: 655 ----------KRRKHLKLE 663
KR L+LE
Sbjct: 442 VPVAAYLLNEKRNSILRLE 460
>gi|32475458|ref|NP_868452.1| ribonuclease E [Rhodopirellula baltica SH 1]
gi|417305326|ref|ZP_12092298.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica WH47]
gi|421611547|ref|ZP_16052686.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica SH28]
gi|440716364|ref|ZP_20896875.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica SWK14]
gi|449138205|ref|ZP_21773496.1| ribonuclease, Rne/Rng family [Rhodopirellula europaea 6C]
gi|32446000|emb|CAD75816.1| ribonuclease E [Rhodopirellula baltica SH 1]
gi|327538420|gb|EGF25092.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica WH47]
gi|408497641|gb|EKK02161.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica SH28]
gi|436438710|gb|ELP32235.1| ribonuclease, Rne/Rng family [Rhodopirellula baltica SWK14]
gi|448883141|gb|EMB13683.1| ribonuclease, Rne/Rng family [Rhodopirellula europaea 6C]
Length = 534
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 219/355 (61%), Gaps = 18/355 (5%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVI 350
++G +V+VQV+KEG+G KGPTL+ Y + R+ +L+ + R+GVSRKI + R RLK
Sbjct: 131 KRGDEVLVQVIKEGIGNKGPTLSTYISIPGRYLVLMPALSRVGVSRKIEDEDDRKRLKKC 190
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+L P +G G +RT AG S +ELQ+D++ LL WK I+ ++ +
Sbjct: 191 LLSLSPPKGLGFIVRTAGAGRSEDELQRDMDYLLRLWKAIVRRVENTTEPGE-------- 242
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
++ + ++D +++ + +++D +Y + +L+ + P + DR++ YD PL
Sbjct: 243 --IYEESDLIIRTIRDIYSDDIDHILIDQKESYEKARDFLKMVMPRVVDRLKYYDGPGPL 300
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F K+N+EEEI + ++V LP+GGS+VI+ TEALV+IDVN G+ F +S E+ +N
Sbjct: 301 FHKYNLEEEIVKINQRQVALPDGGSIVIDPTEALVAIDVNSGN--FRGNASAEENAFRLN 358
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
+AAAK+IAR+LRLRD+GG+IV DFIDM +S +R V ++ A+ DR+ K+ S G
Sbjct: 359 IAAAKEIARQLRLRDLGGVIVNDFIDMRKESYRRKVERVLRDAMANDRARTKILRTSPFG 418
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQ 644
L+E+TR+R+RPS+ I + C CC+G G V+ E+ + E+ R+L N+
Sbjct: 419 LIEMTRQRIRPSLKRSIYKDCPCCEGRGLVKTPES----MSIEVVRMLALAVKNK 469
>gi|30249428|ref|NP_841498.1| ribonuclease G and E [Nitrosomonas europaea ATCC 19718]
gi|30138791|emb|CAD85368.1| Ribonucleases G and E [Nitrosomonas europaea ATCC 19718]
Length = 853
Score = 252 bits (644), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 149/405 (36%), Positives = 231/405 (57%), Gaps = 31/405 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ + + EP EA F D+ G H GF P K P T + T S H
Sbjct: 40 NIYKAAVTRLEPSLEAAFVDYGAGRH-------GFLPYKEIAP----TCFDRNTDWSGHR 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV K+ G KG LT Y L R+ +L+ + + G +SR+++
Sbjct: 89 VADL----LREGQELIVQVDKDERGNKGAALTTYISLAGRYLVLMPNNPQGGGISRRVSA 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ + LQ PEG + RT G + EELQ DL L+ W+ I E A +
Sbjct: 145 EERAELREVINNLQVPEGMSIIARTAGIGRNEEELQWDLNYLVQLWRAIEEAASN----- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
++GV L+++ + ++DYF+ ++ ++++D+P Y + ++ ++ P DR+
Sbjct: 200 EKGV-----FLIYQESSLVIRAIRDYFHAEIGEILIDNPEIYEQAYQFMANVMPANVDRL 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY IPLF +F IE +I S++V LP+GGS+VI+ TEALVSIDVN + GS
Sbjct: 255 KLYQDDIPLFSRFQIEHQIETAYSRQVTLPSGGSIVIDHTEALVSIDVNSARAI--RGSD 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E L+ NL AA +IAR+LRLRD+GG++VVDFIDM N+R V + KA+ DR+ V
Sbjct: 313 IETTALNTNLEAADEIARQLRLRDLGGLVVVDFIDMEVTRNQREVESSLLKALRLDRARV 372
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ ++SR GL+E++R+R+RPS+ PC C GTG + ++S
Sbjct: 373 QIGKISRFGLLELSRQRLRPSLGEGNYIPCPRCHGTGHIRGTDSS 417
Score = 38.9 bits (89), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + + ++Y VT+L P++ AFV+ G
Sbjct: 4 MLFNATQPEELRVAIVDGQKLIDIDIETLGKEQRKSNIYKAAVTRLEPSLEAAFVDYGAG 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPYK 71
>gi|83644954|ref|YP_433389.1| ribonucleases G and E [Hahella chejuensis KCTC 2396]
gi|83632997|gb|ABC28964.1| Ribonucleases G and E [Hahella chejuensis KCTC 2396]
Length = 1056
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 148/414 (35%), Positives = 238/414 (57%), Gaps = 36/414 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F DF E +GF P K E+ + S PQ G K ++ +Q+G
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKSQPQK--------GGKMNIKDLLQEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
++I+QV KE G KG LT + L R+ +L+ + R G +SR+I G +R +LK
Sbjct: 98 QEIIIQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDDRDQLKDAMSG 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L P+ GL IRT G S +ELQ+DL+ LL W +I HA + A P L+
Sbjct: 158 LTVPKDMGLIIRTAGVGRSSKELQRDLDYLLQFWDSIR-HASDSKPA---------PFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
++ + +DY + + ++++D P+ + + ++++ + P+ +R++LY IPLF++
Sbjct: 208 YQESNVVIRATRDYLRQDIGEVLIDHPQVHQDALNFVKAVMPNFENRIKLYQDDIPLFNR 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL A
Sbjct: 268 YQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRDIGG+IV+DFIDM + N+R V +K+A+E DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDIGGLIVIDFIDMTPNKNQREVENRLKEALELDRARVQIGKISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
++R+R+RPS+ +E C C+G G + +E+ + + RL+ +++ + T
Sbjct: 386 MSRQRLRPSLGETRNEMCPRCKGQGSIRGVES----LALSVMRLIEEEAFKERT 435
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKH-YREPFIFPP 155
R + +K RE F P
Sbjct: 64 RHGFLPLKEISREYFKSQP 82
>gi|399521346|ref|ZP_10762086.1| ribonuclease E [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399110584|emb|CCH38645.1| ribonuclease E [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 1022
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 220/391 (56%), Gaps = 31/391 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK-DSKHTPGEKTWLQVQKGT 295
EA F DF E +GF P K E+ + + P+G + + K +++G
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFSKSPEGGRVNIKDV--------LKEGQ 97
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 EVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGL 157
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P GL +RT G S EE+Q DL+ LL W I E + S P L++
Sbjct: 158 NAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASTSRP----------APFLIY 207
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + +++VDS E S++Q + P +++LY+ +PLF++F
Sbjct: 208 QESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQYASKIKLYEDSVPLFNRF 267
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 268 QIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAA 325
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E+
Sbjct: 326 EEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEM 385
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
+R+R+RPS+ C C G G + +E+
Sbjct: 386 SRQRLRPSLGETSGIVCPRCNGQGIIRDVES 416
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F P
Sbjct: 64 RHGFLPLKEISREYFSKSP 82
>gi|330502587|ref|YP_004379456.1| RNAse E [Pseudomonas mendocina NK-01]
gi|328916873|gb|AEB57704.1| RNAse E [Pseudomonas mendocina NK-01]
Length = 1016
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 220/391 (56%), Gaps = 31/391 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK-DSKHTPGEKTWLQVQKGT 295
EA F DF E +GF P K E+ + + P+G + + K +++G
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFSKAPEGGRVNIKDV--------LKEGQ 94
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 EVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGL 154
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P GL +RT G S EE+Q DL+ LL W I E + S P L++
Sbjct: 155 NAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASTSRP----------APFLIY 204
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + +++VDS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 QESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQYASKIKLYEDSVPLFNRF 264
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 265 QIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAA 322
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E+
Sbjct: 323 EEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEM 382
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
+R+R+RPS+ C C G G + +E+
Sbjct: 383 SRQRLRPSLGETSGIVCPRCNGQGIIRDVES 413
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 1 MLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSE 60
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F P
Sbjct: 61 RHGFLPLKEISREYFSKAP 79
>gi|146306650|ref|YP_001187115.1| RNAse E [Pseudomonas mendocina ymp]
gi|145574851|gb|ABP84383.1| RNAse E [Pseudomonas mendocina ymp]
Length = 1012
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 220/391 (56%), Gaps = 31/391 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK-DSKHTPGEKTWLQVQKGT 295
EA F DF E +GF P K E+ + + P+G + + K +++G
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFSKAPEGGRINIKDV--------LKEGQ 97
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 EVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGL 157
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P GL +RT G S EE+Q DL+ LL W I E + S P L++
Sbjct: 158 NAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASTSRP----------APFLIY 207
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + +++VDS E S++Q + P +++LY+ +PLF++F
Sbjct: 208 QESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQYASKIKLYEDSVPLFNRF 267
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 268 QIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAA 325
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E+
Sbjct: 326 EEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEM 385
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
+R+R+RPS+ C C G G + +E+
Sbjct: 386 SRQRLRPSLGETSGIVCPRCNGQGIIRDVES 416
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F P
Sbjct: 64 RHGFLPLKEISREYFSKAP 82
>gi|421504525|ref|ZP_15951466.1| ribonuclease E [Pseudomonas mendocina DLHK]
gi|400344483|gb|EJO92852.1| ribonuclease E [Pseudomonas mendocina DLHK]
Length = 999
Score = 252 bits (643), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 147/391 (37%), Positives = 220/391 (56%), Gaps = 31/391 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK-DSKHTPGEKTWLQVQKGT 295
EA F DF E +GF P K E+ + + P+G + + K +++G
Sbjct: 41 EAAFVDF-------GSERHGFLPLK-EISREYFSKAPEGGRINIKDV--------LKEGQ 84
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 85 EVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGL 144
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P GL +RT G S EE+Q DL+ LL W I E + S P L++
Sbjct: 145 NAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASTSRP----------APFLIY 194
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + +++VDS E S++Q + P +++LY+ +PLF++F
Sbjct: 195 QESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIQQVMPQYASKIKLYEDSVPLFNRF 254
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 255 QIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAA 312
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E+
Sbjct: 313 EEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEM 372
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
+R+R+RPS+ C C G G + +E+
Sbjct: 373 SRQRLRPSLGETSGIVCPRCNGQGIIRDVES 403
>gi|399545512|ref|YP_006558820.1| ribonuclease E [Marinobacter sp. BSs20148]
gi|399160844|gb|AFP31407.1| Ribonuclease E [Marinobacter sp. BSs20148]
Length = 1088
Score = 251 bits (642), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 206/336 (61%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT Y L R+ +L+ + R G +SR+I G ER +LK
Sbjct: 95 IAEGQEVIVQVDKEERGNKGAALTTYISLAGRYLVLMPNNARAGGISRRIEGEERAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNQVQVPKAMGIIVRTAGIGRNSEELQWDLDYLVQFWEAITQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+P + +V ++++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDAPAVHEDVLNFVRAVMPTFENKIKLYSDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N GH E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRATKGH--DIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRD+GG+IV+DFIDM N+R V ++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQREVENKMREALEIDRARVQVGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GL+E++R+R+RPS+ SE C C+G G + +E+
Sbjct: 383 GLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIES 418
>gi|390942749|ref|YP_006406510.1| ribonuclease, Rne/Rng family [Belliella baltica DSM 15883]
gi|390416177|gb|AFL83755.1| ribonuclease, Rne/Rng family [Belliella baltica DSM 15883]
Length = 523
Score = 251 bits (641), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 208/345 (60%), Gaps = 12/345 (3%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIA 351
K +++VQVVKE + TKGP L+ + R+ +L+ + + VS+KI + ER RL +
Sbjct: 118 KNNQILVQVVKEPISTKGPRLSCELSIAGRYLVLVPFSNTVNVSKKIRSAEERRRLVRLI 177
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
+++P FG+ IRTVA G S+ EL KDL L+STW++ M+ A + V G
Sbjct: 178 TSIKPANFGVIIRTVAEGQSVTELDKDLRNLVSTWEDGMKKLPKAK--PKDKVIGE---- 231
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
M SI++D NE + V+ Y ++ SY++ IAP+ V+LY+ + LF+
Sbjct: 232 ----MSMASSIIRDLLNESFDAITVEDELIYDQIRSYIRSIAPEKERIVKLYNGKAKLFE 287
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F IE++I ++ + + LP GG ++IE TEAL IDVN G+ S +E L NLA
Sbjct: 288 SFGIEKQIKSLFGQTISLPQGGYVIIEHTEALHVIDVNSGNKS-NQESDQETTALKTNLA 346
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AAK+IAR+LRLRD+GGIIV+DFIDM NK+ +Y+ +K ++ DRS V L++ GLM
Sbjct: 347 AAKEIARQLRLRDMGGIIVIDFIDMKKADNKKAIYDAMKDEMKDDRSKNTVLPLTKFGLM 406
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
+ITR+RVRP V + E C C GTG+++A K+E+++ +
Sbjct: 407 QITRQRVRPEVNIITKETCPSCNGTGKIQASILVADKLEKDLEHM 451
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST ++I+S+ + RIA+L+++ LVEL + + + +YLG V K+V + AF++
Sbjct: 1 MSTELVIDSA-QSGSRIALLKEKSLVELHSDGEDNQFKVGDIYLGTVRKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYRE 149
+G + + + HY++
Sbjct: 60 VGYEKDAFL---HYQD 72
>gi|443472948|ref|ZP_21062973.1| Ribonuclease E [Pseudomonas pseudoalcaligenes KF707]
gi|442903511|gb|ELS28802.1| Ribonuclease E [Pseudomonas pseudoalcaligenes KF707]
Length = 1056
Score = 251 bits (641), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 219/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + +P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKNPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + +++VDS + E S+++ + P +++LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLVDSVEAHEEALSFIRQVMPQYQSKIKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCDGQGIIRDVES 412
>gi|431926825|ref|YP_007239859.1| Rne/Rng family ribonuclease [Pseudomonas stutzeri RCH2]
gi|431825112|gb|AGA86229.1| ribonuclease, Rne/Rng family [Pseudomonas stutzeri RCH2]
Length = 1060
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + + +K + A P L+++
Sbjct: 158 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVKDASK----------DRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 415
>gi|429739486|ref|ZP_19273240.1| S1 RNA binding domain protein [Prevotella saccharolytica F0055]
gi|429156875|gb|EKX99494.1| S1 RNA binding domain protein [Prevotella saccharolytica F0055]
Length = 524
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 148/424 (34%), Positives = 238/424 (56%), Gaps = 21/424 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK- 277
V +++ +N S +D G F +L+ L + + + +V D +P
Sbjct: 46 VKKLMPGLNASFVDVGFERDAFLHYLD----LGSQFDSYAKYLKQVQSDRKKLYPFAKAS 101
Query: 278 ---DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ+VKE + TKGP LT R+ ILI D++
Sbjct: 102 RLPDLKKDGSVQNTLSV--GQEVLVQIVKEPISTKGPRLTCELSFAGRYLILIPFNDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L + W+N +E
Sbjct: 160 VSSKIKSGEERARLKQLIHSIKPKNCGVIVRTVAEGKRVAELDAELKTLTACWENALEKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ P L+ G+ +++++D FN + + V+ + EV Y+ IA
Sbjct: 220 QKTQ---------KRPQLVFEETGRAVALLRDLFNPTYENIYVNDEDVFKEVKHYVSMIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
PD + V+LYD ++P+FD FNI ++I + K V +G L+IE TEAL +DVN G+
Sbjct: 271 PDKVNIVKLYDGKVPIFDNFNITKQIKSSFGKAVNYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ + A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 IRSEKGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEI 633
+ DR+ + LS+ GLM+ITR+RVRP++ + E C C G G++++ ++E++I
Sbjct: 390 QSDRARHNILPLSKFGLMQITRQRVRPAMDVSVEETCPTCFGKGKIKSSILFTDQLERKI 449
Query: 634 SRLL 637
RL+
Sbjct: 450 DRLV 453
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+KLVE EP + + +VY+ V KL+P + +FV++G R + + HY
Sbjct: 16 IALLEDKKLVEYQNEPREVSFSVGNVYVAKVKKLMPGLNASFVDVGFERDAFL---HY 70
>gi|419953560|ref|ZP_14469704.1| ribonuclease E [Pseudomonas stutzeri TS44]
gi|387969620|gb|EIK53901.1| ribonuclease E [Pseudomonas stutzeri TS44]
Length = 997
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 219/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 41 EAAFVDF-------GAERHGFLPLK-EISREYFSKAPEGRVNIKEV--------LKEGQE 84
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ +
Sbjct: 85 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGIN 144
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + + ++ A P L+++
Sbjct: 145 VPADMGLIVRTAGLGRSSEELQWDLDYLLQLWTAVKDASQGRA----------APFLIYQ 194
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 195 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 254
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 255 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 312
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ ++V +SR GL+E++
Sbjct: 313 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARIQVGRISRFGLLEMS 372
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 373 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 402
>gi|258648379|ref|ZP_05735848.1| ribonuclease G [Prevotella tannerae ATCC 51259]
gi|260851549|gb|EEX71418.1| ribonuclease G [Prevotella tannerae ATCC 51259]
Length = 529
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 243/431 (56%), Gaps = 22/431 (5%)
Query: 201 LVQFEHNDDEEHD--GDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLE-GDHHLDGESN 255
LV+F+ EE G+ + V +++ +N ++ G F +L+ G H+
Sbjct: 24 LVEFQQEGKEESFSVGNIYLAKVKKIMPGLNACFVNVGHERDAFLHYLDLGIHYRS---- 79
Query: 256 GFFPSKSEVPDDSHTSHPQGTKDSKHTPGEK---TWLQVQKGTKVIVQVVKEGLGTKGPT 312
F ++ D + TK S + EK +++G +V+VQ+ KE + TKGP
Sbjct: 80 --FEKYLQLIQDGKKGNLPLTKASGQSDLEKDGSIQNTLKQGQEVLVQIAKEPISTKGPR 137
Query: 313 LTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHS 371
LT RF +LI CD+I VS KI + ER RLK + +++P+GFG IRTVA G
Sbjct: 138 LTCEISFAGRFIVLIPFCDKISVSTKIKSAQERARLKQLISSIKPKGFGCIIRTVAEGKR 197
Query: 372 LEELQKDLEGLLSTWKN-IMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ EL +L+ LL W + I + K+ AL + P+L + +T+++++D FN
Sbjct: 198 VAELDLELKTLLKRWTDAIAKIQKNKALT-----QPKFPLLCYEETSRTVALLRDLFNPS 252
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ + VD Y +V Y++ IAPD V+LY ++P+FD F++ ++I + +
Sbjct: 253 YENIYVDDESVYKDVQDYVRLIAPDRQQIVKLYKGKVPIFDNFSVTKQIKTSFGRTITYK 312
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+G L+IE TEAL +DVN G+ +E LDVNL AA ++AR+LRLRD+GGIIV
Sbjct: 313 HGAYLIIEHTEALHVVDVNSGNRS-KSPEGQEVNALDVNLGAADELARQLRLRDMGGIIV 371
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
VDFIDM N++ +YE + + +++DR+ + LS+ GLM+ITR+RVRP++ + E C
Sbjct: 372 VDFIDMNLAENRQKLYERMVENMKKDRARHNILPLSKFGLMQITRQRVRPAMDVKVEESC 431
Query: 611 TCCQGTGRVEA 621
C GTG++++
Sbjct: 432 PTCGGTGKIKS 442
Score = 44.7 bits (104), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE E + + ++YL V K++P + FVN+G+ R + + HY
Sbjct: 16 IALLEDKRLVEFQQEGKEESFSVGNIYLAKVKKIMPGLNACFVNVGHERDAFL---HY 70
>gi|386021349|ref|YP_005939373.1| ribonuclease E [Pseudomonas stutzeri DSM 4166]
gi|327481321|gb|AEA84631.1| ribonuclease E [Pseudomonas stutzeri DSM 4166]
Length = 1052
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + A P L+++
Sbjct: 155 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|339494689|ref|YP_004714982.1| ribonuclease E [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
gi|338802061|gb|AEJ05893.1| ribonuclease E [Pseudomonas stutzeri ATCC 17588 = LMG 11199]
Length = 1052
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + A P L+++
Sbjct: 155 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|441499714|ref|ZP_20981889.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Fulvivirga imtechensis AK7]
gi|441436454|gb|ELR69823.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Fulvivirga imtechensis AK7]
Length = 520
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 167/479 (34%), Positives = 256/479 (53%), Gaps = 30/479 (6%)
Query: 201 LVQFEHNDD--EEHDGDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNG 256
LV+F H++D + GD + V +V++ +N + ID G + F +L+ S+
Sbjct: 24 LVEFHHDEDGTQFSVGDIYLGTVKKVVQGLNAAFIDIGYEKDAFLHYLDLGPKF---SSL 80
Query: 257 FFPSKSEVPDDSHTSHPQ--GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLT 314
+K V + +S + G K G K + + +++VQVVKE + TKGP L+
Sbjct: 81 HEFTKRAVSKKNTSSRLEKFGLKPDIDKHG-KIGNVLSRNQQILVQVVKEPISTKGPRLS 139
Query: 315 AYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLE 373
L R+ +L+ + + VS+KI + ER RL + +++PE +G+ IRTVA G +
Sbjct: 140 CELSLAGRYLVLVPFSNTVNVSKKIGSSDERKRLVRLVSSIKPENYGVIIRTVAEGKDVR 199
Query: 374 ELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKK 433
EL DL LL+TW H + AL + E + M + +I++D NE
Sbjct: 200 ELDTDLRNLLNTW-----HEGAKALRTAKPREKVIG-----EMSKASAILRDVLNESFDN 249
Query: 434 MVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGG 493
+ +D Y EV SY++ IAPD V+ Y+ + +F+ F IE +I + + V L GG
Sbjct: 250 IHIDDKEIYDEVKSYIKTIAPDKEKIVKYYNGKSKIFENFGIERQIKSAFGQSVSLKGGG 309
Query: 494 SLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDF 553
L++E TEAL IDVN G+ +E L VN+ AAK+IAR+LRLRD+GGIIVVDF
Sbjct: 310 YLIVEHTEALHVIDVNSGNKS-NREEDQEATALSVNIEAAKEIARQLRLRDMGGIIVVDF 368
Query: 554 IDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCC 613
IDM NK+L+Y+++K+ + DRS V LS+ GLM+ITR+RVRP + E C C
Sbjct: 369 IDMKRAENKKLIYKKIKEEMAADRSKFTVLPLSKFGLMQITRQRVRPEMNIATKEVCPTC 428
Query: 614 QGTGRVEALETSFSKIEQEISRLLVSKSYNQSTF--------YFIRHIPKRRKHLKLEY 664
QGTG++ A +IE+ + L+ ++ T YF + RR ++Y
Sbjct: 429 QGTGKISASILVSDQIERSVDYLMTKQNDRDITVVVHPFIYAYFTKGTLSRRLKWFMKY 487
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 74 VSTVILINSSI--CTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAF 131
+S ++INS+ C RIA+L+D+ LVE + + +YLG V K+V + AF
Sbjct: 1 MSNELIINSTQNGC---RIALLKDKSLVEFHHDEDGTQFSVGDIYLGTVKKVVQGLNAAF 57
Query: 132 VNIGNSRPSLMDIKHYREPFIFPPFRCR---TKKQEVNGSASAALEEHAVTYDND 183
++IG + + + HY + + P F TK+ + S+ LE+ + D D
Sbjct: 58 IDIGYEKDAFL---HYLD--LGPKFSSLHEFTKRAVSKKNTSSRLEKFGLKPDID 107
>gi|397687640|ref|YP_006524959.1| ribonuclease E [Pseudomonas stutzeri DSM 10701]
gi|395809196|gb|AFN78601.1| ribonuclease E [Pseudomonas stutzeri DSM 10701]
Length = 1014
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 217/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF D H GF P K E+ + P+G + K + +G +
Sbjct: 41 EAAFVDFG-SDRH------GFLPLK-EISREYFKKTPEGRVNIKDV--------LSEGQE 84
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 85 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 144
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W + E + E P L+++
Sbjct: 145 IPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAVKEAS----------AERQAPFLIYQ 194
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS +E S++Q + P +++LY+ +PLF++F
Sbjct: 195 ESNVIIRAIRDYLRQDIGEVLIDSVEAQNEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 254
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGSLVI+ TEALVSID+N G E+ L NL AA+
Sbjct: 255 IESQIETAFQREVKLPSGGSLVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 312
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 313 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 372
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 373 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 402
>gi|146282970|ref|YP_001173123.1| ribonuclease E [Pseudomonas stutzeri A1501]
gi|145571175|gb|ABP80281.1| ribonuclease E [Pseudomonas stutzeri A1501]
Length = 1070
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 69 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 112
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 113 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 172
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + A P L+++
Sbjct: 173 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRAAPFLIYQ 222
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 223 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 282
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 283 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 340
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 341 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 400
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 401 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 430
>gi|152988059|ref|YP_001347557.1| ribonuclease E [Pseudomonas aeruginosa PA7]
gi|150963217|gb|ABR85242.1| ribonuclease E (RNase E) [Pseudomonas aeruginosa PA7]
Length = 1073
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 69 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 112
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 113 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 172
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 173 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 222
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 223 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 282
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 283 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 340
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 341 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 400
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 401 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 430
>gi|452747533|ref|ZP_21947328.1| ribonuclease E [Pseudomonas stutzeri NF13]
gi|452008649|gb|EME00887.1| ribonuclease E [Pseudomonas stutzeri NF13]
Length = 1039
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 219/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFSKAPEGRVNIKDV--------LREGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + E ++ + P L+++
Sbjct: 155 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVKEASQ----------DRPAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|304312937|ref|YP_003812535.1| ribonuclease E (RNase E) [gamma proteobacterium HdN1]
gi|301798670|emb|CBL46902.1| Ribonuclease E (RNase E) [gamma proteobacterium HdN1]
Length = 1015
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 151/421 (35%), Positives = 231/421 (54%), Gaps = 33/421 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQK-GT 295
EA F DF D H GF P K E+ D +P K G T V K G
Sbjct: 54 EAAFVDF-GADRH------GFLPLK-EISRDYFVRNP------KDIQGRYTVKDVLKEGQ 99
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+V+VQV KE GTKG L+ + L R+ +L+ + R G +SR+I G ER+ LK I L
Sbjct: 100 EVVVQVGKEERGTKGAALSTFISLAGRYLVLMPNNPRAGGISRRIDGDERSDLKEIMNAL 159
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
PE G+ IRT G S EELQ DL+ LL W +I + + P L++
Sbjct: 160 TIPEDMGMIIRTAGMGRSAEELQWDLDYLLQLWASITTAS----------TQRQAPFLIY 209
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++D+P + + +++ + P +++LY +PLF+++
Sbjct: 210 QESNVIIRTIRDYLRQDIGEVIIDTPEVHKDALGFVRQVMPQYESKIKLYKDTVPLFNRY 269
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L+ NL AA
Sbjct: 270 QIESQIEAAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALNTNLEAA 327
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IV+DFIDM N+R V +K+A++ DR+ ++ +SR GLME+
Sbjct: 328 EEIARQLRLRDIGGLIVIDFIDMNQQKNQREVEHRLKEALDIDRARIQTGRISRFGLMEL 387
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHI 653
+R+R+RPS+ C C GTG V L + + I RL+ ++ ++T +
Sbjct: 388 SRQRLRPSLGETSGHVCPRCNGTGYVRDLHS----LALSIMRLIEEEAMKENTAEIHAQV 443
Query: 654 P 654
P
Sbjct: 444 P 444
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATHPEEFRVALVDGQKLYDLDIEHRTREQKKANIYKGRITRLEPSLEAAFVDFGAD 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K R+ F+ P
Sbjct: 64 RHGFLPLKEISRDYFVRNP 82
>gi|383936428|ref|ZP_09989854.1| ribonuclease E [Rheinheimera nanhaiensis E407-8]
gi|383702492|dbj|GAB59945.1| ribonuclease E [Rheinheimera nanhaiensis E407-8]
Length = 1023
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 205/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERQELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G GL +RT G S EEL DL+ LL W I E A+ +
Sbjct: 151 SLGQLQMPDGMGLIVRTAGVGKSFEELDYDLKALLKHWSAITEEAQ----------KRPS 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY V ++++D+PR + E Y+Q PD RV+LY +P
Sbjct: 201 PFLIHQESNVVFRAIRDYLRRDVGEILIDNPRIFEEAKVYIQQFRPDFAHRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ +
Sbjct: 261 LFMHFQIETQIESAFRREVRLPSGGSIVIDSTEALTAIDINSSKAT--KGGDIEETAFNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV+ DR+ V++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLKDAVKHDRARVQIGRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ + C C G G + + E+S I RL+ +S +T
Sbjct: 379 GLLEMSRQRLRPSLGESATHVCPRCHGRGTIRSTESSALS----ILRLIEEESIKDNTSQ 434
Query: 649 FIRHIP 654
+P
Sbjct: 435 IHAQVP 440
>gi|421153582|ref|ZP_15613123.1| ribonuclease E [Pseudomonas aeruginosa ATCC 14886]
gi|404523424|gb|EKA33847.1| ribonuclease E [Pseudomonas aeruginosa ATCC 14886]
Length = 1057
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 415
>gi|421166876|ref|ZP_15625097.1| ribonuclease E [Pseudomonas aeruginosa ATCC 700888]
gi|404536574|gb|EKA46211.1| ribonuclease E [Pseudomonas aeruginosa ATCC 700888]
Length = 1057
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 415
>gi|406662803|ref|ZP_11070888.1| Ribonuclease E [Cecembia lonarensis LW9]
gi|405553177|gb|EKB48452.1| Ribonuclease E [Cecembia lonarensis LW9]
Length = 401
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 137/340 (40%), Positives = 206/340 (60%), Gaps = 12/340 (3%)
Query: 298 IVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKVIAKTLQP 356
+VQVVKE + TKGP L+ + R+ +L+ D + VS+KI ER RL + +++P
Sbjct: 1 MVQVVKEPISTKGPRLSCELSIAGRYLVLVPFSDTVNVSKKIRSADERKRLVRLITSIKP 60
Query: 357 EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAM 416
FG+ IRTVA G S+ EL KDL LLSTW++ M+ LA +G + + M
Sbjct: 61 SNFGVIIRTVAEGQSVTELDKDLRNLLSTWEDGMKK-----LAKAKGRDKVIG-----EM 110
Query: 417 GQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIE 476
SI++D NE + V+ Y ++ SY++ IAP+ V+LY+ + LF+ F IE
Sbjct: 111 SMASSIIRDLLNESFDAITVEDELIYDQIRSYIRSIAPEKEKIVKLYNGKAKLFENFGIE 170
Query: 477 EEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQI 536
++I ++ + + LP GG ++IE TEAL IDVN G+ S +E L NL + K+I
Sbjct: 171 KQIKSLFGQTISLPQGGYVIIEHTEALHVIDVNSGNKS-NQESDQENTALKTNLVSVKEI 229
Query: 537 ARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRK 596
AR+LRLRD+GGIIVVDFIDM NK+ +Y+ +++A++ DRS V L++ GLM+ITR+
Sbjct: 230 ARQLRLRDMGGIIVVDFIDMKKADNKKAIYDAMREAMKDDRSKHTVLPLTKFGLMQITRQ 289
Query: 597 RVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
RVRP V + E C C GTG+++A K+E+++ +
Sbjct: 290 RVRPEVNIVTKETCPSCGGTGKIQASILVADKLEKDLEHI 329
>gi|392983297|ref|YP_006481884.1| ribonuclease E [Pseudomonas aeruginosa DK2]
gi|419756447|ref|ZP_14282797.1| ribonuclease E [Pseudomonas aeruginosa PADK2_CF510]
gi|384397178|gb|EIE43591.1| ribonuclease E [Pseudomonas aeruginosa PADK2_CF510]
gi|392318802|gb|AFM64182.1| ribonuclease E [Pseudomonas aeruginosa DK2]
Length = 1054
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|343084440|ref|YP_004773735.1| Rne/Rng family ribonuclease [Cyclobacterium marinum DSM 745]
gi|342352974|gb|AEL25504.1| ribonuclease, Rne/Rng family [Cyclobacterium marinum DSM 745]
Length = 523
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 209/352 (59%), Gaps = 12/352 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
+ K +V+VQVVKE + TKGP L+ L R+ +L+ + + VS+KI ER RL
Sbjct: 116 LSKNNQVLVQVVKEPISTKGPRLSCELSLAGRYLVLVPFSNTVNVSKKIRSADERKRLSR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P FG+ IRTVA G S+ EL KDL LL TW++ M + A + + + G
Sbjct: 176 LITSIKPVNFGVIIRTVAEGQSVTELDKDLRNLLETWEDGMRKLQKAKVK--DKIIGE-- 231
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
M SI++D NE + V+ Y ++ SY++ IAP+ V+LY+ + L
Sbjct: 232 ------MSLASSIIRDLLNESFDAITVEDEVIYDQMRSYIRSIAPEKEKIVKLYNGKAKL 285
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+ F IE++I ++ V LP GG L+IE TEAL +DVN G+ S +E L N
Sbjct: 286 FESFGIEKQIKSLFGTTVSLPQGGYLIIEHTEALHVVDVNSGNKS-NQESDQENTGLKTN 344
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
+ A K+IAR+LRLRD+GGIIV+DFIDM NK+ ++E +K+A+ DRS V L++ G
Sbjct: 345 MVAVKEIARQLRLRDMGGIIVIDFIDMKKAENKKAIFEAMKEAMREDRSKNTVLPLTKFG 404
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKS 641
LM+ITR+RVRP + + E C C GTG+++A K+E+++ + V ++
Sbjct: 405 LMQITRQRVRPEMNIVTKEICPSCNGTGKIQASILVADKMEKDLEHIAVHQN 456
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S+ +LI+SS RIA+L+++ L+EL +E + + +YLG V K+V + AF++
Sbjct: 1 MSSELLIDSS-QNGSRIALLKNKSLIELHVEEEDNKFKVGDIYLGAVKKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYRE 149
+G + + + HY++
Sbjct: 60 VGYEKDAFL---HYQD 72
>gi|407790940|ref|ZP_11138030.1| ribonuclease [Gallaecimonas xiamenensis 3-C-1]
gi|407202224|gb|EKE72218.1| ribonuclease [Gallaecimonas xiamenensis 3-C-1]
Length = 977
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/366 (38%), Positives = 210/366 (57%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVIVQIDKEERGNKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGEERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+LQ PEG GL +RT G S EEL+ DL+ L W+NI E A S
Sbjct: 154 ALSSLQLPEGMGLIVRTAGVGKSAEELKWDLDVLQHHWQNIQEAAASRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++V+D R + EV S++Q + PD +V+ Y IP
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEIVIDHNRVFEEVKSHIQTMRPDFITKVKPYKGEIP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+ + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFNYYQIELQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V + AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPARHQREVENRLADAVRADRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RPS+ + C C GTG V + E+ + I RL+ +S +T
Sbjct: 382 GLMEMSRQRLRPSLGDASNHICPRCTGTGYVRSTES----LALSILRLIEEESLKDNTAQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 VEAQVP 443
Score = 39.7 bits (91), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQAEELRVALVDGQKLYDLDIEHPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|170720702|ref|YP_001748390.1| ribonuclease [Pseudomonas putida W619]
gi|169758705|gb|ACA72021.1| ribonuclease, Rne/Rng family [Pseudomonas putida W619]
Length = 1072
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 146/390 (37%), Positives = 219/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 415
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F P
Sbjct: 64 RHGFLPLKEISREYFKKAP 82
>gi|116050978|ref|YP_790197.1| ribonuclease E [Pseudomonas aeruginosa UCBPP-PA14]
gi|421173826|ref|ZP_15631563.1| ribonuclease E [Pseudomonas aeruginosa CI27]
gi|115586199|gb|ABJ12214.1| ribonuclease E [Pseudomonas aeruginosa UCBPP-PA14]
gi|404535350|gb|EKA45051.1| ribonuclease E [Pseudomonas aeruginosa CI27]
Length = 1057
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 415
>gi|15598172|ref|NP_251666.1| ribonuclease E [Pseudomonas aeruginosa PAO1]
gi|9949075|gb|AAG06364.1|AE004723_8 ribonuclease E [Pseudomonas aeruginosa PAO1]
Length = 1057
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 415
>gi|355641290|ref|ZP_09052175.1| hypothetical protein HMPREF1030_01261 [Pseudomonas sp. 2_1_26]
gi|354830888|gb|EHF14920.1| hypothetical protein HMPREF1030_01261 [Pseudomonas sp. 2_1_26]
Length = 1072
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 69 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 112
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 113 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 172
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 173 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 222
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 223 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 282
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 283 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 340
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 341 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 400
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 401 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 430
>gi|421179863|ref|ZP_15637437.1| ribonuclease E [Pseudomonas aeruginosa E2]
gi|404546441|gb|EKA55495.1| ribonuclease E [Pseudomonas aeruginosa E2]
Length = 1060
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 415
>gi|386067007|ref|YP_005982311.1| ribonuclease E [Pseudomonas aeruginosa NCGM2.S1]
gi|348035566|dbj|BAK90926.1| ribonuclease E [Pseudomonas aeruginosa NCGM2.S1]
Length = 1054
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|420139198|ref|ZP_14647055.1| ribonuclease E [Pseudomonas aeruginosa CIG1]
gi|421159714|ref|ZP_15618826.1| ribonuclease E [Pseudomonas aeruginosa ATCC 25324]
gi|403248068|gb|EJY61667.1| ribonuclease E [Pseudomonas aeruginosa CIG1]
gi|404546364|gb|EKA55419.1| ribonuclease E [Pseudomonas aeruginosa ATCC 25324]
Length = 1057
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 415
>gi|296388531|ref|ZP_06878006.1| ribonuclease E [Pseudomonas aeruginosa PAb1]
Length = 1054
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|452879504|ref|ZP_21956597.1| ribonuclease E, partial [Pseudomonas aeruginosa VRFPA01]
gi|452183939|gb|EME10957.1| ribonuclease E, partial [Pseudomonas aeruginosa VRFPA01]
Length = 587
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 151/404 (37%), Positives = 221/404 (54%), Gaps = 32/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F DF E +GF P K E+ + P+G + K
Sbjct: 37 NIYKGRITRVEPSLEAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G
Sbjct: 89 --------LSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEG 140
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L P GL +RT G S EELQ DL+ LL W I E +
Sbjct: 141 EERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS------- 193
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G GA P L+++ + ++DY + + ++++DS E ++++ + P +V
Sbjct: 194 --GERGA-PFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKV 250
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF++F IE +I + V LP+GGS+VI+ TEALVSID+N G
Sbjct: 251 KLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGD 308
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA++IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V
Sbjct: 309 IEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARV 368
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
+V +SR GL+E++R+R+RPS+ C C G G + +E+
Sbjct: 369 QVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|107102525|ref|ZP_01366443.1| hypothetical protein PaerPA_01003589 [Pseudomonas aeruginosa PACS2]
Length = 1054
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|418586457|ref|ZP_13150499.1| ribonuclease E [Pseudomonas aeruginosa MPAO1/P1]
gi|418591012|ref|ZP_13154916.1| ribonuclease E [Pseudomonas aeruginosa MPAO1/P2]
gi|421517505|ref|ZP_15964179.1| ribonuclease E [Pseudomonas aeruginosa PAO579]
gi|375043200|gb|EHS35831.1| ribonuclease E [Pseudomonas aeruginosa MPAO1/P1]
gi|375050253|gb|EHS42736.1| ribonuclease E [Pseudomonas aeruginosa MPAO1/P2]
gi|404346987|gb|EJZ73336.1| ribonuclease E [Pseudomonas aeruginosa PAO579]
Length = 1054
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|386058051|ref|YP_005974573.1| ribonuclease E [Pseudomonas aeruginosa M18]
gi|347304357|gb|AEO74471.1| ribonuclease E [Pseudomonas aeruginosa M18]
Length = 1054
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|254241683|ref|ZP_04935005.1| ribonuclease E [Pseudomonas aeruginosa 2192]
gi|126195061|gb|EAZ59124.1| ribonuclease E [Pseudomonas aeruginosa 2192]
Length = 1057
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 415
>gi|453043708|gb|EME91436.1| ribonuclease E [Pseudomonas aeruginosa PA21_ST175]
Length = 1054
Score = 249 bits (636), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 155 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|416876658|ref|ZP_11919349.1| ribonuclease E, partial [Pseudomonas aeruginosa 152504]
gi|334840496|gb|EGM19148.1| ribonuclease E [Pseudomonas aeruginosa 152504]
Length = 661
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 151/404 (37%), Positives = 221/404 (54%), Gaps = 32/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F DF E +GF P K E+ + P+G + K
Sbjct: 37 NIYKGRITRVEPSLEAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G
Sbjct: 89 --------LSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEG 140
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L P GL +RT G S EELQ DL+ LL W I E +
Sbjct: 141 EERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS------- 193
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G GA P L+++ + ++DY + + ++++DS E ++++ + P +V
Sbjct: 194 --GERGA-PFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKV 250
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF++F IE +I + V LP+GGS+VI+ TEALVSID+N G
Sbjct: 251 KLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGD 308
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA++IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V
Sbjct: 309 IEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARV 368
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
+V +SR GL+E++R+R+RPS+ C C G G + +E+
Sbjct: 369 QVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|416860810|ref|ZP_11914413.1| ribonuclease E, partial [Pseudomonas aeruginosa 138244]
gi|334837284|gb|EGM16053.1| ribonuclease E [Pseudomonas aeruginosa 138244]
Length = 683
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 151/404 (37%), Positives = 221/404 (54%), Gaps = 32/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F DF E +GF P K E+ + P+G + K
Sbjct: 37 NIYKGRITRVEPSLEAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G
Sbjct: 89 --------LSEGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEG 140
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L P GL +RT G S EELQ DL+ LL W I E +
Sbjct: 141 EERNELREALNGLNAPADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS------- 193
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G GA P L+++ + ++DY + + ++++DS E ++++ + P +V
Sbjct: 194 --GERGA-PFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKV 250
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF++F IE +I + V LP+GGS+VI+ TEALVSID+N G
Sbjct: 251 KLYQDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGD 308
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA++IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V
Sbjct: 309 IEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARV 368
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
+V +SR GL+E++R+R+RPS+ C C G G + +E+
Sbjct: 369 QVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|256821862|ref|YP_003145825.1| Rne/Rng family ribonuclease [Kangiella koreensis DSM 16069]
gi|256795401|gb|ACV26057.1| ribonuclease, Rne/Rng family [Kangiella koreensis DSM 16069]
Length = 498
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 142/362 (39%), Positives = 222/362 (61%), Gaps = 16/362 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLK- 348
+ +G K+IVQV+K+ +G+KG LT + + SRF +L+ +GVS++I + ERTRLK
Sbjct: 105 LHEGQKIIVQVIKDPIGSKGARLTTHITIPSRFLVLMPDNPHVGVSQRIEDLDERTRLKD 164
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++A T G IRT A G S EL +D++ L W I E AK+
Sbjct: 165 LLADTDFGGDTGYIIRTAAEGASDIELDRDVKFLSKLWSGISEKAKTTK----------A 214
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H + L I++D + ++++ +D+ +++ + +++ + P++ +R+E Y+ P
Sbjct: 215 PQLVHEDLALELRIMRDIIEDDIERVRMDNSQSFKRIQNFVMEFLPEINNRIEHYEGERP 274
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+FD +NIEEEI L ++VPL +GG L+I+QTEA+ ++DVN G GH + E+ I
Sbjct: 275 IFDLYNIEEEIKKALERKVPLKSGGYLIIDQTEAMTTVDVNTG-AFIGH-KNLEETIFRT 332
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +AR+LRLR++GGII+VDFIDM D+ +KR V ++KAVERD +SE+S
Sbjct: 333 NLEAATALARQLRLRNLGGIIIVDFIDMQDEEHKRHVLRTLEKAVERDHVKTSISEVSTL 392
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E+TRKR R S+ ++ EPC C G G V+ T +I +EISR S++Y+ F
Sbjct: 393 GLVEMTRKRSRESLERLMCEPCQQCNGRGFVKTPVTICYEIFREISR--ASRAYDVQKFL 450
Query: 649 FI 650
+
Sbjct: 451 VL 452
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDI 144
R+A++E+ L E+ LE + ++Y G+V +++P M AFV+IG+ R + + +
Sbjct: 15 RVALVENGVLQEVHLERTTNRGIVGNIYKGIVRRVMPGMQAAFVDIGHDRAAFLHV 70
>gi|429335474|ref|ZP_19216102.1| ribonuclease E [Pseudomonas putida CSV86]
gi|428759859|gb|EKX82145.1| ribonuclease E [Pseudomonas putida CSV86]
Length = 1058
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + +P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKNPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + A P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASQ----------DRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 412
>gi|254235950|ref|ZP_04929273.1| ribonuclease E [Pseudomonas aeruginosa C3719]
gi|126167881|gb|EAZ53392.1| ribonuclease E [Pseudomonas aeruginosa C3719]
Length = 1057
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 216/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 415
>gi|422404568|ref|ZP_16481620.1| ribonuclease E, partial [Pseudomonas syringae pv. glycinea str.
race 4]
gi|330877843|gb|EGH11992.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. race 4]
Length = 504
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K E G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDVLSE--------GQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|410092614|ref|ZP_11289136.1| ribonuclease E [Pseudomonas viridiflava UASWS0038]
gi|409760043|gb|EKN45211.1| ribonuclease E [Pseudomonas viridiflava UASWS0038]
Length = 1083
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|409398217|ref|ZP_11249038.1| ribonuclease E [Pseudomonas sp. Chol1]
gi|409117350|gb|EKM93784.1| ribonuclease E [Pseudomonas sp. Chol1]
Length = 998
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 219/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 41 EAAFVDF-------GAERHGFLPLK-EISREYFSKAPEGRVNIKEV--------LKEGQE 84
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ +
Sbjct: 85 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGIN 144
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + + ++ A P L+++
Sbjct: 145 VPADMGLIVRTAGLGRSSEELQWDLDYLLQLWTAVKDASQGRA----------APFLIYQ 194
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 195 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 254
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 255 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 312
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 313 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 372
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 373 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 402
>gi|429214947|ref|ZP_19206109.1| ribonuclease E [Pseudomonas sp. M1]
gi|428154174|gb|EKX00725.1| ribonuclease E [Pseudomonas sp. M1]
Length = 1090
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 217/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + +P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKNPEGRINIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEELQWDLDYLLQLWGAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 415
>gi|317503237|ref|ZP_07961295.1| ribonuclease G [Prevotella salivae DSM 15606]
gi|315665650|gb|EFV05259.1| ribonuclease G [Prevotella salivae DSM 15606]
Length = 539
Score = 249 bits (635), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 146/424 (34%), Positives = 238/424 (56%), Gaps = 21/424 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP----Q 274
V +++ +N +D G F +L+ L + N + +V D +P Q
Sbjct: 61 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYLKQVNSDRKKLYPFSKAQ 116
Query: 275 GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 117 RVPDLKKDGSVQQVLTV--GQEVLVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVS 174
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +++ L W++ +
Sbjct: 175 VSSKIKSGEERARLKQLIYSIKPKNCGVIVRTVAEGKRVAELDTEMKVLNKRWEDAILKT 234
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ + P L+ G+ +++++D FN + + V++ Y+EV YL IA
Sbjct: 235 QK---------QQKRPQLVFEETGRAIAMLRDLFNPSFENIYVNNEEVYNEVKHYLTLIA 285
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+LY ++P+FD FN+ ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 286 PEKAGIVKLYKGKVPIFDNFNVTKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 345
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA +IAR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 346 TKAQNGQEANA-LDVNLGAADEIARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 404
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEI 633
++DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG++++ ++E++I
Sbjct: 405 QKDRARHNILPLSKFGLMQITRQRVRPAMDVNVEETCPTCNGTGKIKSSILFTDQLERKI 464
Query: 634 SRLL 637
RL+
Sbjct: 465 DRLV 468
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE EP +++ ++Y V KL+P + FV++G R + + HY
Sbjct: 31 IALLEDKNLVEYQNEPRQASFSVGNIYAAKVKKLMPGLNACFVDVGYERDAFL---HY 85
>gi|422632643|ref|ZP_16697808.1| ribonuclease E, partial [Pseudomonas syringae pv. pisi str. 1704B]
gi|330942729|gb|EGH45265.1| ribonuclease E [Pseudomonas syringae pv. pisi str. 1704B]
Length = 603
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K E G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDVLSE--------GQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|409422872|ref|ZP_11259950.1| ribonuclease E [Pseudomonas sp. HYS]
Length = 1050
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKSPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + A P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASQ----------DRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 412
>gi|149376751|ref|ZP_01894509.1| Ribonucleases G and E [Marinobacter algicola DG893]
gi|149358990|gb|EDM47456.1| Ribonucleases G and E [Marinobacter algicola DG893]
Length = 1047
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 216/358 (60%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK
Sbjct: 95 VAEGQEVIIQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNDVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQFWEAISQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ Y +V ++++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDAGTVYEDVLNFVRAVMPSFENKIKLYKDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N GH E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRATKGH--DIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IV+DFIDM ++R V +++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALEIDRARVQVGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+RPS+ SE C C+G G + +E+ + I RL+ +S + T
Sbjct: 383 GLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIES----LALSIMRLIYEESSKEKT 436
>gi|257487559|ref|ZP_05641600.1| ribonuclease, Rne/Rng family protein, partial [Pseudomonas syringae
pv. tabaci str. ATCC 11528]
Length = 700
Score = 249 bits (635), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|398915381|ref|ZP_10657300.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM49]
gi|398176454|gb|EJM64172.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM49]
Length = 1024
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|398955617|ref|ZP_10676545.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM33]
gi|398150884|gb|EJM39456.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM33]
Length = 700
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|218890825|ref|YP_002439689.1| ribonuclease E [Pseudomonas aeruginosa LESB58]
gi|218771048|emb|CAW26813.1| ribonuclease E [Pseudomonas aeruginosa LESB58]
Length = 1057
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 147/390 (37%), Positives = 217/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREGLNGLN 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT + G S EELQ DL+ LL W I E + G GA P L+++
Sbjct: 158 APADMGLIVRTASLGRSTEELQWDLDYLLQLWSAIKEAS---------GERGA-PFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 415
>gi|374705009|ref|ZP_09711879.1| ribonuclease E [Pseudomonas sp. S9]
Length = 1011
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 217/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPDGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + A P L+++
Sbjct: 155 APVDMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASQ----------DRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + +++VDS E S+++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+ I+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIFIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|426410940|ref|YP_007031039.1| ribonuclease E [Pseudomonas sp. UW4]
gi|426269157|gb|AFY21234.1| ribonuclease E [Pseudomonas sp. UW4]
Length = 1064
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|422653203|ref|ZP_16715974.1| ribonuclease E [Pseudomonas syringae pv. actinidiae str. M302091]
gi|330966257|gb|EGH66517.1| ribonuclease E [Pseudomonas syringae pv. actinidiae str. M302091]
Length = 1112
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|386811647|ref|ZP_10098872.1| ribonuclease [planctomycete KSU-1]
gi|386403917|dbj|GAB61753.1| ribonuclease [planctomycete KSU-1]
Length = 506
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 139/376 (36%), Positives = 218/376 (57%), Gaps = 16/376 (4%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQ--GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKG 310
+ NGF +P + + +H T H +K + G +V+VQV KEG+G KG
Sbjct: 64 KKNGFLHISDVLPPNGNGNHSSEGDTAQKSHRESQKIRDILHLGQEVLVQVTKEGMGAKG 123
Query: 311 PTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQP-EGFGLTIRTVAA 368
P+LT Y L RF +L+ R GVS+KI + ER RLK I L P + G IRT
Sbjct: 124 PSLTTYISLPGRFLVLMPGVPRHGVSKKILSEEERQRLKKILAGLNPPQNIGFIIRTAGE 183
Query: 369 GHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFN 428
+ +E+ KD LL WKNI + +K+A+ P +++ + ++D F+
Sbjct: 184 QQTKKEIHKDFHYLLKLWKNIEKRSKNAS----------APATIYQESDLVIRAIRDIFS 233
Query: 429 EKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVP 488
+++++VDS Y +L+ I P + LY + PLF K+NIE+EI ++ K++P
Sbjct: 234 TDIREILVDSEAVYERTRDFLRIIMPKYEKLLTLYREDKPLFHKYNIEKEIEDINCKKIP 293
Query: 489 LPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGI 548
LP GGS+VIEQTEALV+IDVN G F S E+ NL AAK++ R++RLRDIGG+
Sbjct: 294 LPRGGSIVIEQTEALVAIDVNSGR--FKDESDPEETAFKTNLKAAKEVTRQIRLRDIGGV 351
Query: 549 IVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISE 608
IV+DFIDM ++ + + + + A++RD++ K+ ++S+ +E+TR+R+R S+ ++ E
Sbjct: 352 IVIDFIDMQEEGHIHAIEKALADALKRDKARTKMLKMSKFCTIELTRQRIRHSLRDVLFE 411
Query: 609 PCTCCQGTGRVEALET 624
C C+GTG + +E+
Sbjct: 412 ECKFCRGTGYSKTVES 427
>gi|422590957|ref|ZP_16665607.1| ribonuclease E [Pseudomonas syringae pv. morsprunorum str. M302280]
gi|330878260|gb|EGH12409.1| ribonuclease E [Pseudomonas syringae pv. morsprunorum str. M302280]
Length = 1109
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|213969772|ref|ZP_03397907.1| RNAse E [Pseudomonas syringae pv. tomato T1]
gi|213925580|gb|EEB59140.1| RNAse E [Pseudomonas syringae pv. tomato T1]
Length = 1112
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|447917921|ref|YP_007398489.1| ribonuclease E [Pseudomonas poae RE*1-1-14]
gi|445201784|gb|AGE26993.1| ribonuclease E [Pseudomonas poae RE*1-1-14]
Length = 1049
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|301382848|ref|ZP_07231266.1| ribonuclease E [Pseudomonas syringae pv. tomato Max13]
gi|302062846|ref|ZP_07254387.1| ribonuclease E [Pseudomonas syringae pv. tomato K40]
gi|302131354|ref|ZP_07257344.1| ribonuclease E [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|422660562|ref|ZP_16722972.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M302278]
gi|331019165|gb|EGH99221.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M302278]
Length = 1109
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|398928247|ref|ZP_10663356.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM48]
gi|398168666|gb|EJM56672.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM48]
Length = 1067
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|237800338|ref|ZP_04588799.1| ribonuclease E [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331023195|gb|EGI03252.1| ribonuclease E [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 1093
Score = 248 bits (634), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|325275826|ref|ZP_08141691.1| ribonuclease E [Pseudomonas sp. TJI-51]
gi|324099045|gb|EGB97026.1| ribonuclease E [Pseudomonas sp. TJI-51]
Length = 510
Score = 248 bits (634), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 146/390 (37%), Positives = 217/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K E G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKTPEGRVNIKEVLSE--------GQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 155 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 412
>gi|226939997|ref|YP_002795070.1| ribonuclease E [Laribacter hongkongensis HLHK9]
gi|226714923|gb|ACO74061.1| Probable ribonuclease E [Laribacter hongkongensis HLHK9]
Length = 1068
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 158/448 (35%), Positives = 240/448 (53%), Gaps = 41/448 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ V K N+ +I EP EA F D+ H GF P K EV
Sbjct: 26 DLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRH-------GFLPFK-EVSRTY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+H G + + +G ++IVQV K+ G KG LT Y L R+ +L+
Sbjct: 78 FKNHEGGRPRIQDV--------LSEGQELIVQVEKDERGNKGAALTTYVSLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR+I G ER L+ + LQ P+G L RT G SLEELQ DL L+ W
Sbjct: 130 NNPRGGGVSRRIEGEERNELRELMSQLQTPQGMSLIARTAGIGRSLEELQWDLNYLMQLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ E A SA A P L+ + + ++DYF ++ +++VD+ + +
Sbjct: 190 TAV-ESAASAQTA---------PFLIFQEGSLVIRAIRDYFQPEIGEILVDTEEIWDQAR 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P +R++LY +PLF +F IE +I S++V LP+GG++VI+ TEALVSI
Sbjct: 240 QFMSHVMPGNVNRIKLYKDDVPLFSRFQIEHQIETAFSRQVALPSGGAIVIDHTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G+ E + NL AA +IAR+LRLRD+GG++V+DFIDM + N+R V
Sbjct: 300 DVNSARAT--KGADIETTACNTNLEAADEIARQLRLRDLGGLVVIDFIDMENPKNQREVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSF 626
+ +K A++ DR+ V++ +LSR GL+E++R+R++PS+ PC C GTG + E+S
Sbjct: 358 QRLKDALKADRARVQMGKLSRFGLLELSRQRLQPSLGETSHIPCPRCSGTGFIRGTESSA 417
Query: 627 SKIEQEISRLLVSKSYNQSTFYFIRHIP 654
I R+L ++ ++T +P
Sbjct: 418 LN----ILRILTEEAMKENTGAVHAQVP 441
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 40/69 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KLV+L +E V + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTD 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|421616809|ref|ZP_16057811.1| ribonuclease E [Pseudomonas stutzeri KOS6]
gi|421617297|ref|ZP_16058291.1| ribonuclease E [Pseudomonas stutzeri KOS6]
gi|409780795|gb|EKN60412.1| ribonuclease E [Pseudomonas stutzeri KOS6]
gi|409781290|gb|EKN60892.1| ribonuclease E [Pseudomonas stutzeri KOS6]
Length = 1045
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 217/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 41 EAAFVDF-------GAERHGFLPLK-EISREYFSKAPEGRVNIKDV--------LREGQE 84
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 85 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 144
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + P L+++
Sbjct: 145 VPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRVAPFLIYQ 194
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 195 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 254
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 255 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 312
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ ++V +SR GL+E++
Sbjct: 313 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARIQVGRISRFGLLEMS 372
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 373 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 402
>gi|398847230|ref|ZP_10604159.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM84]
gi|398251784|gb|EJN37012.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM84]
Length = 1085
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 415
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 64 RHGFLPLKEISREYF 78
>gi|399008412|ref|ZP_10710885.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM17]
gi|398116465|gb|EJM06227.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM17]
Length = 1068
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|398889173|ref|ZP_10643083.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM55]
gi|398189831|gb|EJM77093.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM55]
Length = 1029
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|28870994|ref|NP_793613.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28854243|gb|AAO57308.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 1128
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 401
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 402 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 431
>gi|409200239|ref|ZP_11228442.1| RNase E [Pseudoalteromonas flavipulchra JG1]
Length = 1177
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 208/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
+++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ER LK
Sbjct: 94 IKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERIELKE 153
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+++ P+G GL +RT G S EEL+ DL+ LL W I A S G
Sbjct: 154 ALSRLNVPKGMGLIVRTAGVGKSFEELEYDLKALLVHWDAIQNAANS----------GKA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD +RV+LY +P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFINRVKLYQNDVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K+AV DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKEAVRTDRARVQIGKISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ C C G G + + E+ I I RL+ ++ +T
Sbjct: 382 GLLEMSRQRLRPSLGEASQHTCPRCDGQGTIRSNES----IALSILRLIEEEAIKDNTAQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 VNAQVP 443
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEIAKTY-FP 79
>gi|386013236|ref|YP_005931513.1| Ribonuclease [Pseudomonas putida BIRD-1]
gi|313499942|gb|ADR61308.1| Ribonuclease [Pseudomonas putida BIRD-1]
Length = 1095
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 155 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 412
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 60
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 61 RHGFLPLKEISREYF 75
>gi|422584463|ref|ZP_16659571.1| ribonuclease E, partial [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330869278|gb|EGH03987.1| ribonuclease E [Pseudomonas syringae pv. aesculi str. 0893_23]
Length = 685
Score = 248 bits (633), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|399004330|ref|ZP_10706957.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM18]
gi|398119643|gb|EJM09325.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM18]
Length = 947
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKTPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|416028271|ref|ZP_11571327.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. race 4]
gi|320327713|gb|EFW83721.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. race 4]
Length = 1110
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|416015324|ref|ZP_11562937.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. B076]
gi|320325302|gb|EFW81369.1| ribonuclease E [Pseudomonas syringae pv. glycinea str. B076]
Length = 1083
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|289624527|ref|ZP_06457481.1| ribonuclease E, partial [Pseudomonas syringae pv. aesculi str.
NCPPB 3681]
Length = 693
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|345880128|ref|ZP_08831685.1| hypothetical protein HMPREF9431_00349 [Prevotella oulorum F0390]
gi|343923705|gb|EGV34389.1| hypothetical protein HMPREF9431_00349 [Prevotella oulorum F0390]
Length = 524
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 154/455 (33%), Positives = 248/455 (54%), Gaps = 25/455 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP----Q 274
V +++ +N +D G F +L+ L + N + +V D +P Q
Sbjct: 46 VKKLMPGLNACFVDLGYERDAFLHYLD----LGSQFNSYNKYLKQVCSDRKKLYPFSKAQ 101
Query: 275 GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 102 RLPDIKKDDTIQQVLSV--GQEVLVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +++ L W+ +
Sbjct: 160 VSSKIKSGEERARLKQLIYSIKPKNCGVIVRTVAEGKRVAELDNEMKVLTKRWEKAISKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ A P L+ G+ +++++D FN + + V++ Y+E+ YL IA
Sbjct: 220 QKNA---------KRPQLVFEETGRAIAMLRDLFNPSFEHIHVNNEEVYNEIKHYLTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ D V+LY + P+FD FNI ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PEKADIVKLYTGKTPIFDNFNITKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 SRAKNGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEI 633
++DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG++ + ++E++I
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDVNVEEDCPTCNGTGKIRSSILFTDQLERKI 449
Query: 634 SRLL----VSKSYNQSTFYFIRHIPKRRKHLKLEY 664
RL+ ++K Y Y +I K LK ++
Sbjct: 450 DRLINKIGITKFYLHVHPYVAAYINKGFLSLKRKW 484
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+KLVE EP +++ ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKKLVEYQNEPRQASFSVGNIYVAKVKKLMPGLNACFVDLGYERDAFL---HY 70
>gi|422676159|ref|ZP_16735493.1| ribonuclease E [Pseudomonas syringae pv. aceris str. M302273]
gi|330973867|gb|EGH73933.1| ribonuclease E [Pseudomonas syringae pv. aceris str. M302273]
Length = 1101
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 222/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT++ L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|418294222|ref|ZP_12906118.1| ribonuclease E [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
gi|379065601|gb|EHY78344.1| ribonuclease E [Pseudomonas stutzeri ATCC 14405 = CCUG 16156]
Length = 1041
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 217/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + P L+++
Sbjct: 155 VPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRVAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|339486465|ref|YP_004700993.1| ribonuclease [Pseudomonas putida S16]
gi|338837308|gb|AEJ12113.1| ribonuclease [Pseudomonas putida S16]
Length = 1060
Score = 248 bits (633), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 36 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 79
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 80 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 139
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + A P L+++
Sbjct: 140 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASQ----------DRAAPFLIYQ 189
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 190 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 249
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 250 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 307
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 308 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 367
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 368 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 397
>gi|167032491|ref|YP_001667722.1| ribonuclease [Pseudomonas putida GB-1]
gi|166858979|gb|ABY97386.1| ribonuclease, Rne/Rng family [Pseudomonas putida GB-1]
Length = 1086
Score = 248 bits (633), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 415
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F P
Sbjct: 64 RHGFLPLKEISREYFKKAP 82
>gi|395444680|ref|YP_006384933.1| ribonuclease [Pseudomonas putida ND6]
gi|388558677|gb|AFK67818.1| ribonuclease [Pseudomonas putida ND6]
Length = 1078
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 415
Score = 38.9 bits (89), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F P
Sbjct: 64 RHGFLPLKEISREYFKKAP 82
>gi|440741937|ref|ZP_20921268.1| ribonuclease E [Pseudomonas syringae BRIP39023]
gi|440378274|gb|ELQ14899.1| ribonuclease E [Pseudomonas syringae BRIP39023]
Length = 1100
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|431801443|ref|YP_007228346.1| ribonuclease E [Pseudomonas putida HB3267]
gi|430792208|gb|AGA72403.1| ribonuclease E [Pseudomonas putida HB3267]
Length = 1080
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + A P L+++
Sbjct: 155 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASQ----------DRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 412
>gi|425898392|ref|ZP_18874983.1| ribonuclease E [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
gi|397891346|gb|EJL07824.1| ribonuclease E [Pseudomonas chlororaphis subsp. aureofaciens 30-84]
Length = 1070
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|422595278|ref|ZP_16669566.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M301315]
gi|330985583|gb|EGH83686.1| ribonuclease E [Pseudomonas syringae pv. lachrymans str. M301315]
Length = 1112
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|422649107|ref|ZP_16712219.1| ribonuclease E [Pseudomonas syringae pv. maculicola str. ES4326]
gi|330962633|gb|EGH62893.1| ribonuclease E [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 1101
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|71734954|ref|YP_273875.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555507|gb|AAZ34718.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 1129
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 401
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 402 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 431
>gi|407365685|ref|ZP_11112217.1| ribonuclease E [Pseudomonas mandelii JR-1]
Length = 1068
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|421522318|ref|ZP_15968960.1| ribonuclease E [Pseudomonas putida LS46]
gi|402753937|gb|EJX14429.1| ribonuclease E [Pseudomonas putida LS46]
Length = 1088
Score = 248 bits (632), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 155 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 412
Score = 38.9 bits (89), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 60
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 61 RHGFLPLKEISREYF 75
>gi|397694050|ref|YP_006531931.1| ribonuclease [Pseudomonas putida DOT-T1E]
gi|397330780|gb|AFO47139.1| ribonuclease [Pseudomonas putida DOT-T1E]
Length = 1088
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 155 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 412
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 1 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 60
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 61 RHGFLPLKEISREYF 75
>gi|389685606|ref|ZP_10176930.1| ribonuclease E [Pseudomonas chlororaphis O6]
gi|388551259|gb|EIM14528.1| ribonuclease E [Pseudomonas chlororaphis O6]
Length = 1065
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|422683287|ref|ZP_16741548.1| ribonuclease E [Pseudomonas syringae pv. tabaci str. ATCC 11528]
gi|331012622|gb|EGH92678.1| ribonuclease E [Pseudomonas syringae pv. tabaci str. ATCC 11528]
Length = 1110
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|148549015|ref|YP_001269117.1| ribonuclease [Pseudomonas putida F1]
gi|148513073|gb|ABQ79933.1| RNAse E [Pseudomonas putida F1]
Length = 1090
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 415
Score = 38.9 bits (89), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F P
Sbjct: 64 RHGFLPLKEISREYFKKAP 82
>gi|298159218|gb|EFI00276.1| Ribonuclease E [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
Length = 1129
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 401
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 402 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 431
>gi|440738417|ref|ZP_20917950.1| ribonuclease E [Pseudomonas fluorescens BRIP34879]
gi|440381089|gb|ELQ17633.1| ribonuclease E [Pseudomonas fluorescens BRIP34879]
Length = 1046
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|440719694|ref|ZP_20900118.1| ribonuclease E [Pseudomonas syringae BRIP34876]
gi|440728804|ref|ZP_20909006.1| ribonuclease E [Pseudomonas syringae BRIP34881]
gi|440360587|gb|ELP97850.1| ribonuclease E [Pseudomonas syringae BRIP34881]
gi|440367340|gb|ELQ04405.1| ribonuclease E [Pseudomonas syringae BRIP34876]
Length = 1103
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|312962574|ref|ZP_07777064.1| hypothetical protein PFWH6_4495 [Pseudomonas fluorescens WH6]
gi|311283154|gb|EFQ61745.1| hypothetical protein PFWH6_4495 [Pseudomonas fluorescens WH6]
Length = 1058
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 401
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 402 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 431
>gi|26988635|ref|NP_744060.1| Rne/Rng family ribonuclease [Pseudomonas putida KT2440]
gi|24983416|gb|AAN67524.1|AE016381_1 ribonuclease E [Pseudomonas putida KT2440]
Length = 1091
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/390 (37%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ A P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRAAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 415
>gi|398878490|ref|ZP_10633611.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM67]
gi|398200113|gb|EJM87040.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM67]
Length = 1072
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|257093129|ref|YP_003166770.1| Rne/Rng family ribonuclease [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
gi|257045653|gb|ACV34841.1| ribonuclease, Rne/Rng family [Candidatus Accumulibacter phosphatis
clade IIA str. UW-1]
Length = 951
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 149/419 (35%), Positives = 236/419 (56%), Gaps = 36/419 (8%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ ++I EP EA F D+ E +GF P K EV S
Sbjct: 26 DLDIESAAKEQKKSNIYKAVITRIEPSLEAAFVDY-------GAERHGFLPFK-EV---S 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
G + S+ T E +++G ++IVQV K+ G KG LT + L R+ +L+
Sbjct: 75 RAFFQPGVETSRATIKEA----LREGQELIVQVDKDERGNKGAALTTFVSLAGRYLVLMP 130
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ERT L+ + LQ P G L RT A G + EELQ DL LL W
Sbjct: 131 NNPRGGGVSRRVEGTERTELREVMDQLQVPPGMSLIARTAAIGRNGEELQWDLNYLLQLW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I + A+ +GA L+++ + ++DYF + ++++D+ Y +
Sbjct: 191 KAIEDAAQQQ--------KGA--FLIYQEGSLVIRAIRDYFQPDIGEILIDTDEVYDQAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P +R++ Y +PLF +F IE +I + S++V LP+GG++VI+ TEALVS+
Sbjct: 241 QFMSHVMPGTVNRIKRYRDDVPLFSRFQIEHQIESAYSRQVGLPSGGAIVIDHTEALVSV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G+ E+ L NL AA+++AR+LRLRD+GG+I++DFIDM + N+R V
Sbjct: 301 DVNSGRAT--RGADIEETALKTNLEAAEEVARQLRLRDLGGLIIIDFIDMENARNQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ A+ DR+ V+ ++SR GL+E++R+R+RP++ PC C GTG + + E++
Sbjct: 359 NRIRDALRFDRARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCSGTGHIRSTESA 417
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQKKSNIYKAVITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K F P
Sbjct: 64 RHGFLPFKEVSRAFFQP 80
>gi|126668126|ref|ZP_01739088.1| Ribonucleases G and E [Marinobacter sp. ELB17]
gi|126627396|gb|EAZ98031.1| Ribonucleases G and E [Marinobacter sp. ELB17]
Length = 1092
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 205/336 (61%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT Y L R+ +L+ + R G +SR+I G ER +LK
Sbjct: 95 IAEGQEVIVQVDKEERGNKGAALTTYISLAGRYLVLMPNNARAGGISRRIEGEERAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNQVQVPKSMGIIVRTAGIGRNSEELQWDLDYLVQFWEAITQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ + +V ++++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDAAAVHEDVLNFVRAVMPTFENKIKLYSDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N GH E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRATKGH--DIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRD+GG+IV+DFIDM N+R V ++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQREVENKMREALEIDRARVQVGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GL+E++R+R+RPS+ SE C C+G G + +E+
Sbjct: 383 GLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIES 418
>gi|66044883|ref|YP_234724.1| ribonuclease E and G [Pseudomonas syringae pv. syringae B728a]
gi|63255590|gb|AAY36686.1| RNAse E [Pseudomonas syringae pv. syringae B728a]
Length = 1120
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 401
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 402 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 431
>gi|398941145|ref|ZP_10669678.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM41(2012)]
gi|398161964|gb|EJM50177.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM41(2012)]
Length = 1076
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|392421832|ref|YP_006458436.1| ribonuclease E [Pseudomonas stutzeri CCUG 29243]
gi|390984020|gb|AFM34013.1| ribonuclease E [Pseudomonas stutzeri CCUG 29243]
Length = 1035
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 217/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFSKSPEGRVNIKDV--------LREGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ LL W + D + P L+++
Sbjct: 155 IPADMGLIVRTAGLGRSSEELQCDLDYLLQLWTAVK----------DASQDRPAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S++Q + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALSFIQQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E++++A+E DR+ ++V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKMREALEADRARIQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 383 RQRLRPSLGETSGIVCPRCNGQGIIRDVES 412
>gi|424066713|ref|ZP_17804176.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|408002002|gb|EKG42272.1| ribonuclease, Rne/Rng family protein [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
Length = 1106
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|398885314|ref|ZP_10640230.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM60]
gi|398192690|gb|EJM79827.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM60]
Length = 1072
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|395796676|ref|ZP_10475971.1| ribonuclease E [Pseudomonas sp. Ag1]
gi|395339240|gb|EJF71086.1| ribonuclease E [Pseudomonas sp. Ag1]
Length = 1081
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKSPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|404400398|ref|ZP_10991982.1| ribonuclease E [Pseudomonas fuscovaginae UPB0736]
Length = 1106
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 412
>gi|388548081|ref|ZP_10151336.1| ribonuclease E [Pseudomonas sp. M47T1]
gi|388273797|gb|EIK93404.1| ribonuclease E [Pseudomonas sp. M47T1]
Length = 1126
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKSPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|395494531|ref|ZP_10426110.1| ribonuclease E [Pseudomonas sp. PAMC 25886]
Length = 1081
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|302187287|ref|ZP_07263960.1| ribonuclease E [Pseudomonas syringae pv. syringae 642]
Length = 1106
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|395651256|ref|ZP_10439106.1| ribonuclease E [Pseudomonas extremaustralis 14-3 substr. 14-3b]
Length = 1053
Score = 247 bits (631), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|289649338|ref|ZP_06480681.1| ribonuclease E [Pseudomonas syringae pv. aesculi str. 2250]
Length = 1094
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|229592116|ref|YP_002874235.1| putative ribonuclease E [Pseudomonas fluorescens SBW25]
gi|229363982|emb|CAY51521.1| putative ribonuclease E [Pseudomonas fluorescens SBW25]
Length = 1075
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 70 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 113
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 114 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 173
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 174 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 223
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 224 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 283
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 284 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 341
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 342 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 401
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 402 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 431
>gi|422299571|ref|ZP_16387133.1| ribonuclease, Rne/Rng family protein [Pseudomonas avellanae BPIC
631]
gi|407988490|gb|EKG31016.1| ribonuclease, Rne/Rng family protein [Pseudomonas avellanae BPIC
631]
Length = 1100
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPDGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|422619791|ref|ZP_16688478.1| ribonuclease E [Pseudomonas syringae pv. japonica str. M301072]
gi|330900158|gb|EGH31577.1| ribonuclease E [Pseudomonas syringae pv. japonica str. M301072]
Length = 860
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|421141456|ref|ZP_15601441.1| ribonuclease, Rne/Rng family protein [Pseudomonas fluorescens
BBc6R8]
gi|404507465|gb|EKA21450.1| ribonuclease, Rne/Rng family protein [Pseudomonas fluorescens
BBc6R8]
Length = 1084
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKSPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|300727912|ref|ZP_07061290.1| ribonuclease, Rne/Rng family [Prevotella bryantii B14]
gi|299774754|gb|EFI71368.1| ribonuclease, Rne/Rng family [Prevotella bryantii B14]
Length = 523
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 239/422 (56%), Gaps = 18/422 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + N + +V D+ +P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYQKYVKQVESDNRKLYPFAKAT 101
Query: 279 SKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
++ ++ +Q ++ G V+VQ+VKE + TKGP LT R+ +LI D++ VS
Sbjct: 102 TQPDLDKEGSIQNVLKAGQDVLVQIVKEPISTKGPRLTGELSFAGRYLVLIPFGDKVSVS 161
Query: 337 RKIT-GVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
KI G ER RLK + +++P G+ +RTVA G + EL +++ L+ W++ + +
Sbjct: 162 SKIKKGEERARLKQLIHSIKPNNCGVIVRTVAEGKRVAELDAEMKILVKRWEDAISKVQK 221
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
P L++ G+ +++++D FN + + V+ +EV +Y+ IAP+
Sbjct: 222 TQ---------KRPQLIYEETGRAVAMLRDLFNPTYENIYVNDENVMNEVKNYVSLIAPE 272
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
+ V+LY ++P+FD FNI ++I + K V +G L+IE TEAL +DVN G+
Sbjct: 273 KTNIVKLYSGKVPIFDNFNITKQIKSSFGKTVNYKHGAYLIIEHTEALHVVDVNSGNRTR 332
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
G +E LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++L+YE + K +++
Sbjct: 333 EKG--QEANALDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQLLYERMCKNMQK 390
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG++++ +E++I R
Sbjct: 391 DRAKHNILPLSKFGLMQITRQRVRPAIDVNVEETCPSCFGTGKIKSSILFTDTLERKIDR 450
Query: 636 LL 637
L+
Sbjct: 451 LV 452
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE E +++ ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKQLVEYQNESRQASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|423690400|ref|ZP_17664920.1| ribonuclease E [Pseudomonas fluorescens SS101]
gi|388002630|gb|EIK63959.1| ribonuclease E [Pseudomonas fluorescens SS101]
Length = 1050
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|443644834|ref|ZP_21128684.1| Ribonuclease E [Pseudomonas syringae pv. syringae B64]
gi|443284851|gb|ELS43856.1| Ribonuclease E [Pseudomonas syringae pv. syringae B64]
Length = 1104
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|398854365|ref|ZP_10610932.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM80]
gi|398236176|gb|EJN21970.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM80]
Length = 1078
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|443293532|ref|ZP_21032626.1| Ribonuclease G [Micromonospora lupini str. Lupac 08]
gi|385883390|emb|CCH20777.1| Ribonuclease G [Micromonospora lupini str. Lupac 08]
Length = 1031
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 206/327 (62%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + + G+SRK+ ER RL+ +
Sbjct: 573 LRSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPNGNASGISRKLPDTERKRLRDV 632
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L P+G G+ +RT A G S +EL +D++ L + W++I AK+A EG P+
Sbjct: 633 LKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDI--QAKAA--------EGGAPV 682
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +V+D FNE +++V++ ++Y V SYL ++PDL DRV Y +F
Sbjct: 683 LLYEEPDLVIRVVRDLFNEDFRELVIEGEQSYGMVESYLSHVSPDLVDRVRRYVGTSDVF 742
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ I+E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 743 AEYRIDEQIIKGLDRKVFLPSGGSLVIDKTEAMTVVDVNTGK-YTGSGGNLEETVTRNNL 801
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 802 EAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 861
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKR+ + SE C CC+G G
Sbjct: 862 VQMTRKRIGAGLLEAFSETCECCKGRG 888
Score = 45.4 bits (106), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR IAVLED LVE + S +VYLG V
Sbjct: 470 ILSESEFLARREAVDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQ 529
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV++G R +++
Sbjct: 530 NVLPSMEAAFVDVGRGRNAVL 550
>gi|297569133|ref|YP_003690477.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2]
gi|296925048|gb|ADH85858.1| ribonuclease, Rne/Rng family [Desulfurivibrio alkaliphilus AHT2]
Length = 511
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/374 (37%), Positives = 219/374 (58%), Gaps = 18/374 (4%)
Query: 267 DSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWIL 326
D+ H +H PG+ + +G ++VQV KE LG+KG LT + L R +
Sbjct: 96 DTCCGHDTDPLCRRH-PGQNIEDLLSEGQDIMVQVCKEPLGSKGARLTCHITLPCRNLVF 154
Query: 327 ITSCDRIGVSRKITGVE-RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLST 385
+ + IG+SRKI + R L+ + L+P G G +RTVA + E+L+ D+E LL T
Sbjct: 155 MPRTEHIGISRKIEDEDVRQMLRQDIEALRPAGAGFIVRTVAETATNEDLEADMEFLLHT 214
Query: 386 WKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEV 445
W+ I A +A VP L+++ + TL +V+D F+ +V ++VVD P TY V
Sbjct: 215 WEEIQARATTAP----------VPGLIYQDLDITLRVVRDVFSPEVDQVVVDEPETYQRV 264
Query: 446 TSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVS 505
+++ P L RVEL + P+FD + +E E+N L +++ L GG ++IE TEAL
Sbjct: 265 LQFVETFVPHLKGRVELAPEDPPIFDAYGVELEVNRALERKIWLRCGGYIIIEPTEALTV 324
Query: 506 IDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLV 565
IDVN G + +G E+ I N+ AAK+IA +LRLR+IGGII+VDFIDM D+ ++ V
Sbjct: 325 IDVNTGRYVGKNGL--EETIFKTNMEAAKEIAYQLRLRNIGGIIIVDFIDMEDEEHREAV 382
Query: 566 YEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET- 624
+ +K+A ++D+S + + +S GL+++TRKR R + ++ EPC CCQGTG + + +
Sbjct: 383 FNALKEAAKKDKSRLNILRVSEFGLVQMTRKRNREDLEHLMCEPCNCCQGTGVIRSSRSL 442
Query: 625 ---SFSKIEQEISR 635
F +IE+E R
Sbjct: 443 CYDVFRQIEREACR 456
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST +LIN++ + RIA+LE L E LE +VY G V +++P M AFV+
Sbjct: 1 MSTQLLINATPYEI-RIALLEHGNLAEFYLEHPAEKGLVGNVYRGRVVRVLPGMQAAFVD 59
Query: 134 IGNSRPSLM 142
+G R +
Sbjct: 60 VGLERTGFL 68
>gi|398872454|ref|ZP_10627745.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM74]
gi|398202624|gb|EJM89464.1| ribonuclease, Rne/Rng family, partial [Pseudomonas sp. GM74]
Length = 709
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|333901067|ref|YP_004474940.1| ribonuclease, Rne/Rng family [Pseudomonas fulva 12-X]
gi|333116332|gb|AEF22846.1| ribonuclease, Rne/Rng family [Pseudomonas fulva 12-X]
Length = 1055
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 219/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + + P+G + K +++G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFSKAPEGRVNIKDV--------LKEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + P L+++
Sbjct: 158 IPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWSAIKEASQ----------DRPAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + +++VDS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+ I+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIYIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++A+E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREALEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGQGIIRDVES 415
>gi|387895158|ref|YP_006325455.1| ribonuclease E [Pseudomonas fluorescens A506]
gi|387160236|gb|AFJ55435.1| ribonuclease E [Pseudomonas fluorescens A506]
Length = 1055
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|398995351|ref|ZP_10698236.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM21]
gi|398130147|gb|EJM19495.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM21]
Length = 1060
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|424071362|ref|ZP_17808788.1| ribonuclease E and G [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
gi|407998971|gb|EKG39365.1| ribonuclease E and G [Pseudomonas syringae pv. avellanae str.
ISPaVe037]
Length = 1106
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|388468708|ref|ZP_10142918.1| ribonuclease E [Pseudomonas synxantha BG33R]
gi|388012288|gb|EIK73475.1| ribonuclease E [Pseudomonas synxantha BG33R]
Length = 1052
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|386287785|ref|ZP_10064956.1| ribonuclease, Rne/Rng family protein [gamma proteobacterium BDW918]
gi|385279295|gb|EIF43236.1| ribonuclease, Rne/Rng family protein [gamma proteobacterium BDW918]
Length = 937
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 223/399 (55%), Gaps = 28/399 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
NV I EP EA F DF E +GF P K E+ + +P +
Sbjct: 40 NVYKGTITRVEPSLEAAFVDF-------GAERHGFLPLK-EISKEYFYRNPADGSGGRA- 90
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
K V++GT+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G
Sbjct: 91 ---KIKDLVKEGTQVIVQVEKEERGNKGAALTTFISLAGRYMVLMPNNPRAGGISRRIEG 147
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT L+ ++ P+ G+ +RT G S EELQ DL+ LL W I + ++
Sbjct: 148 DERTELRDALNSINIPDAMGVIVRTAGVGRSSEELQWDLDYLLHLWSAIKQASE------ 201
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
E PIL+ + + ++DY + + ++++DS +Y+E +++ + P ++
Sbjct: 202 ----ERKAPILILQESNVIIRAIRDYLRDDIDQVLIDSEESYNEAMHFVEQVMPHFKSKI 257
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY ++PLF+++ IE +I + + V LP+GGS+VI+ TEALVSID+N G
Sbjct: 258 RLYKDQVPLFNRYQIESQIESAFQREVQLPSGGSIVIDPTEALVSIDINSARAT--KGGD 315
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA +IAR+LRLRDIGG+IVVDFIDM N+R V V+ A+E DR+ +
Sbjct: 316 IEETALQTNLEAADEIARQLRLRDIGGLIVVDFIDMLAAKNQREVENRVRDAMEPDRARI 375
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
++ +SR GL+E++R+R+RPS+ ++ C C G G +
Sbjct: 376 QIGRISRFGLLEMSRQRLRPSLGETSAKVCPRCSGQGTI 414
>gi|408480368|ref|ZP_11186587.1| ribonuclease E [Pseudomonas sp. R81]
Length = 1048
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|404484987|ref|ZP_11020191.1| rne/Rng family ribonuclease [Barnesiella intestinihominis YIT
11860]
gi|404339992|gb|EJZ66423.1| rne/Rng family ribonuclease [Barnesiella intestinihominis YIT
11860]
Length = 524
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 206/327 (62%), Gaps = 12/327 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+ KE + +KGP LTA RF +LI D++ VS+KI + E+ RL+ + +
Sbjct: 119 GQEVLVQIAKEPISSKGPRLTAEISFAGRFLVLIPFSDKVSVSQKIKSNEEKLRLRQLIQ 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P FG+ +RTVA G + EL +L+ L+ W++++ + A L P L+
Sbjct: 179 SIKPRNFGVIVRTVAEGKRVAELNNELKTLVRCWEDMLVKLQKAQL----------PSLV 228
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ G+T+ I++D F+ + + V+ TY+++ +Y+ I+PD D V+LYD +P+FD
Sbjct: 229 YEETGRTVGILRDIFSPSFENIYVNDKETYNQIYNYVSLISPDRKDIVKLYDGELPIFDN 288
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + L K V +G ++IE TEAL IDVN G+ S +E LDVN+ A
Sbjct: 289 FAITKQIKSSLGKTVSFKSGAYVIIEHTEALHVIDVNSGNRS-KASSDQESNALDVNMNA 347
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A++IAR+LRLRD+GGIIV+DFIDM + N++ +Y+ +++ + DR+ + LS+ GLM+
Sbjct: 348 AEEIARQLRLRDMGGIIVIDFIDMDEAENRQKLYDRMRELMANDRARHNILPLSKFGLMQ 407
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRV 619
ITR+RVRP++ + SE C C G G +
Sbjct: 408 ITRQRVRPALDIITSEDCPTCHGKGTI 434
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LE+ +LVEL E + +YLG V KL+P + AFV++G + + + HY
Sbjct: 16 IALLENNRLVELQKEARNISFSVGDIYLGRVKKLMPGLNAAFVDVGYEKDAFL---HY 70
>gi|387813844|ref|YP_005429327.1| ribonuclease E [Marinobacter hydrocarbonoclasticus ATCC 49840]
gi|381338857|emb|CCG94904.1| fused ribonucleaseE: endoribonuclease ; RNA-binding protein ;RNA
degradosome binding protein [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 1056
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 217/366 (59%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R +LK
Sbjct: 95 VSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDDRAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNGVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQFWEAITQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ Y +V S+++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDADNVYEDVLSFVRAVMPTFENKIKLYKDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGQDIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IV+DFIDM ++R V +++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALELDRARVQVGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ SE C C+G G + +E+ + I RL+ +S + T
Sbjct: 383 GLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIES----LALSIMRLIYEESSKEKTAE 438
Query: 649 FIRHIP 654
+P
Sbjct: 439 VRAMVP 444
>gi|254283338|ref|ZP_04958306.1| ribonuclease E [gamma proteobacterium NOR51-B]
gi|219679541|gb|EED35890.1| ribonuclease E [gamma proteobacterium NOR51-B]
Length = 946
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 218/385 (56%), Gaps = 27/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF D H GF P K T+ P G K +++GT+
Sbjct: 54 EAAFVDF-GADRH------GFLPLKEIAHQYYRTNAPSGEGRVK------IRDVLKEGTE 100
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
++VQV KE G+KG LT++ L R+ +L+ + + G +SR+I G +R+ L+ +A+
Sbjct: 101 LLVQVDKEERGSKGAALTSFISLAGRYMVLMPNNPKAGGISRRIEGDDRSELRDALAELN 160
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G G+ IRT G S EELQ DL+ LL W I A + P+LL++
Sbjct: 161 IPDGMGVIIRTAGVGRSSEELQWDLDYLLQLWDAIETAAN----------DNKSPVLLYQ 210
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + V ++++D P Y + + ++ + P R++ Y+ IPLF++F
Sbjct: 211 ESDVIIRSIRDYLRDDVDQVLIDDPVAYKQASDFVSMVMPKYSQRIKFYEDPIPLFNRFQ 270
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
+E +I S+ V LP+GGS+VI+ TEALVSID+N GS E+ L+ NL AA+
Sbjct: 271 VEGQIETAFSREVRLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEQTALNTNLEAAE 328
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG+IV+DFIDM N+R V ++ A+E DR+ V+V +SR GL+E++
Sbjct: 329 EIARQLRLRDMGGLIVIDFIDMNASKNQRAVENRIRDALEIDRARVQVGRISRFGLLEMS 388
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+RPS+ C C G G +
Sbjct: 389 RQRLRPSLGETSGMVCPRCTGQGTI 413
>gi|329894957|ref|ZP_08270756.1| Ribonuclease E [gamma proteobacterium IMCC3088]
gi|328922686|gb|EGG30021.1| Ribonuclease E [gamma proteobacterium IMCC3088]
Length = 883
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/420 (35%), Positives = 233/420 (55%), Gaps = 32/420 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K P+ +K K K V++GT+
Sbjct: 54 EAAFVDF-------GAERHGFLPLKEIAPE-------YYSKKGKAGDSSKIKDLVKEGTE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
+I+QV KE G KG +T+Y L R+ +L+ + + G +SR+I G +R++L+ I + +
Sbjct: 100 IIIQVDKEERGNKGAAITSYISLAGRYMVLMPNNPKAGGISRRIEGDDRSQLRDAINELV 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G G+ +RT G S EELQ DL L+ W+ I + AADE P LL +
Sbjct: 160 IPDGMGVIVRTAGVGRSSEELQWDLNYLVQLWEAITK-------AADEF---RAPTLLFQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ V+DY + + ++++DS + E + ++ + P DR++LY+ IP+F++F
Sbjct: 210 ESNVIVRAVRDYLRDDIDQVLIDSTEAHREASDFVGLVMPQYRDRIKLYEDPIPMFNRFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA
Sbjct: 270 IEAQIETAFQREVRLPSGGSIVIDPTEALVSIDINSAKAT--RGGDIEETALQTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM N+RLV ++ A+ DR+ V+V ++SR GL+E++
Sbjct: 328 EIARQLRLRDMGGLVVIDFIDMLASKNQRLVENRIRDALAIDRARVQVGKISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+RPS+ + C C G G + ++ + I RLL ++ T H+P
Sbjct: 388 RQRLRPSLGETSAIVCPRCTGQGIIRDTKS----LALSILRLLEEEAIKDRTAEVRAHVP 443
>gi|398906828|ref|ZP_10653636.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM50]
gi|398172451|gb|EJM60315.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM50]
Length = 1063
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|120554794|ref|YP_959145.1| ribonuclease [Marinobacter aquaeolei VT8]
gi|120324643|gb|ABM18958.1| RNAse E [Marinobacter aquaeolei VT8]
Length = 1056
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 217/366 (59%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R +LK
Sbjct: 95 VSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDDRAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNGVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQFWEAITQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ Y +V S+++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDADNVYEDVLSFVRAVMPTFENKIKLYKDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGQDIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IV+DFIDM ++R V +++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALELDRARVQVGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ SE C C+G G + +E+ + I RL+ +S + T
Sbjct: 383 GLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIES----LALSIMRLIYEESSKEKTAE 438
Query: 649 FIRHIP 654
+P
Sbjct: 439 VRAMVP 444
>gi|402698989|ref|ZP_10846968.1| ribonuclease E [Pseudomonas fragi A22]
Length = 1072
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|398856934|ref|ZP_10612645.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM79]
gi|398242003|gb|EJN27634.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM79]
Length = 1063
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|398869360|ref|ZP_10624734.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM78]
gi|398230617|gb|EJN16633.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM78]
Length = 1087
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKTPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|308273585|emb|CBX30187.1| Ribonuclease E [uncultured Desulfobacterium sp.]
Length = 490
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/336 (40%), Positives = 202/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKV 349
V++G + +VQV K+ + KG LT Y L RF +L+ + +GVSRKI+ E R RLK
Sbjct: 93 VKQGQEFLVQVTKDPIMKKGAMLTTYISLAGRFVVLMPGSEGVGVSRKISDEEERKRLKE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++ PEGFG+ +RT + E+ +D+ LL WKNI + +E
Sbjct: 153 TVSNIKIPEGFGIIVRTAGTDSTKIEISRDIAYLLRLWKNIKSNV----------MEVKS 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LL++ + ++DYF V ++++D P Y EV +++ I+P V+L+ P
Sbjct: 203 PALLYKERHLVVRSIRDYFTSDVNEILIDDPAVYREVRDFIKIISPKHATIVKLFKGDKP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F KF +E +I+++ RV L +GGS+VIEQTEALV+IDVN G H S E+
Sbjct: 263 IFTKFQLENQISSIFENRVKLKSGGSIVIEQTEALVAIDVNSGKAT--HTKSIEETAHAT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IVVDFIDM D + V + K V+ D++ +K ++SR
Sbjct: 321 NLEAAEEIARQLRLRDLGGLIVVDFIDMRDSKHNLEVEKVFKTFVKEDKARIKFGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ F EPC+ C+G G + ET
Sbjct: 381 GLMELSRQRIRPSIEFGSYEPCSYCKGKGVTPSAET 416
>gi|152979495|ref|YP_001345124.1| ribonuclease [Actinobacillus succinogenes 130Z]
gi|150841218|gb|ABR75189.1| ribonuclease, Rne/Rng family [Actinobacillus succinogenes 130Z]
Length = 962
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 211/347 (60%), Gaps = 17/347 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 IKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERIELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + +++
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHHWEAIKQVSENRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + +++VDSP+ Y + ++++ + PD +R++LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILVDSPKIYEKAKAHIKLVRPDFINRIKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL++ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDATEALIAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
GL+E++R+R+ PS+ S C CQGTG+V E+L S ++ +E
Sbjct: 382 GLLEMSRQRLSPSLGESSSHICPRCQGTGKVRDNESLSLSILRLIEE 428
>gi|406911450|gb|EKD51238.1| hypothetical protein ACD_62C00302G0003 [uncultured bacterium]
Length = 552
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 176/550 (32%), Positives = 266/550 (48%), Gaps = 74/550 (13%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148
RIA+LE L EL +E ++Y G + +++P M AFV+IG
Sbjct: 15 RIALLERGVLAELSIERETEMQVAGNIYFGRINRVLPGMQAAFVDIG------------- 61
Query: 149 EPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDLVQFEHND 208
LE+ A Y D S E V E + + +
Sbjct: 62 ------------------------LEKAAFLYVADIVSDMFEGVFEDEVDEVGKNGDAGG 97
Query: 209 DEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D+E GD DD EP + D + + + N +S S
Sbjct: 98 DDEEGGDKAP-------------DDAEPTDSGSENGGSDQNANKDRNQGRGGRSSSVRKS 144
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P + V++G ++VQV KE + TKG +T+ L R+ + +
Sbjct: 145 RY---------RRAPLPRIEDVVKEGQTIVVQVAKEPIRTKGARITSQISLPGRYLVYMP 195
Query: 329 SCDRIGVSRKITGV-ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK 387
+ + +GVSR+IT ER RLK I + +P G RT + G E++ +D+ L W+
Sbjct: 196 TVNHVGVSRRITSYDERIRLKEILRKNKPAQGGFIARTNSIGTCEEKIVEDMNNLKQIWQ 255
Query: 388 NIME-HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I + KS A P LL++ M L V+D F+ ++ ++V+DS + V
Sbjct: 256 EIYKKQEKSRA-----------PSLLYQDMDIVLRAVRDNFSREITRLVIDSREHHTSVV 304
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ P+L DR+E YDK +P+FD + IE EIN L K++ L +GG L+I+ +EAL SI
Sbjct: 305 DFMNKCMPELVDRIEYYDKDLPIFDAYGIESEINRALGKKIWLKSGGYLIIDSSEALTSI 364
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G F E+ IL NL A ++IA +L+LR IGGI+++DFIDM ++ VY
Sbjct: 365 DVNTGR--FVGKRDFEETILTTNLEAVEEIAYQLKLRSIGGIVIIDFIDMNKYQHRMKVY 422
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSF 626
+K A++ DRS +S +S GL+E+TRKR R S+T M+S PC C GTG V+ T
Sbjct: 423 YTLKDALKNDRSKTTISRISDLGLVEMTRKRTRESLTQMLSCPCEHCHGTGYVKTPLTVA 482
Query: 627 SKIEQEISRL 636
+I +EI R+
Sbjct: 483 FEIFREIKRV 492
>gi|422664802|ref|ZP_16724675.1| ribonuclease E [Pseudomonas syringae pv. aptata str. DSM 50252]
gi|330975221|gb|EGH75287.1| ribonuclease E [Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 1098
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 221/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLI 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIFCPRCNGTGIIRDVES 412
>gi|346642834|ref|YP_258907.2| ribonuclease E [Pseudomonas protegens Pf-5]
gi|341579978|gb|AAY91076.2| ribonuclease E [Pseudomonas protegens Pf-5]
Length = 1071
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|398973234|ref|ZP_10684236.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM25]
gi|398143208|gb|EJM32087.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM25]
Length = 1081
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 415
>gi|399910322|ref|ZP_10778636.1| ribonuclease E [Halomonas sp. KM-1]
Length = 1091
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 216/385 (56%), Gaps = 30/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF D H GF P K S K++ P K L+ +G +
Sbjct: 51 EAAFVDFG-ADRH------GFLPLK-------EISREYFLKEASGRPSIKEVLK--EGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G ERT+LK L
Sbjct: 95 VIVQVDKEERGNKGAALTTFISLAGRFLVLMPNNPRAGGISRRIEGDERTQLKEAMGLLT 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PE G+ +RT G S EELQ DL+ L+ W++I E A G A P L++R
Sbjct: 155 VPEKMGVIVRTAGIGRSSEELQWDLDYLVQVWESITEEA---------GKRPA-PFLIYR 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DSP + E ++++ + P +++LY +PLF +F
Sbjct: 205 ESNVIIRAMRDYLRQDIGEVLIDSPEVHQEALTFIRQVMPSYQQKIKLYADEVPLFSRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 265 IESQIETAYEREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQTNLEAAD 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM+ N+R V ++ A++ DR+ V++ +SR GLME++
Sbjct: 323 EIARQLRLRDIGGLVVIDFIDMSPARNQREVENRMRDALKLDRARVQIGRISRFGLMEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+RPS+ C C G G +
Sbjct: 383 RQRLRPSLGETSGVVCPRCNGQGTI 407
>gi|398841801|ref|ZP_10599009.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM102]
gi|398107458|gb|EJL97457.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM102]
Length = 1060
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|330811002|ref|YP_004355464.1| ribonuclease E [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
gi|327379110|gb|AEA70460.1| ribonuclease E [Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 1062
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|77460387|ref|YP_349894.1| RNAse E [Pseudomonas fluorescens Pf0-1]
gi|77384390|gb|ABA75903.1| putative ribonuclease E [Pseudomonas fluorescens Pf0-1]
Length = 1082
Score = 246 bits (628), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 415
>gi|423698562|ref|ZP_17673052.1| ribonuclease E [Pseudomonas fluorescens Q8r1-96]
gi|388004933|gb|EIK66200.1| ribonuclease E [Pseudomonas fluorescens Q8r1-96]
Length = 1065
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|87306478|ref|ZP_01088625.1| ribonuclease E [Blastopirellula marina DSM 3645]
gi|87290657|gb|EAQ82544.1| ribonuclease E [Blastopirellula marina DSM 3645]
Length = 588
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 218/354 (61%), Gaps = 18/354 (5%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVI 350
++G +V+VQV+KEG+G+KGPTL+ Y + R+ +L+ + R+GVSRKI + R RL+
Sbjct: 177 KRGDEVLVQVIKEGIGSKGPTLSTYISIPGRYLVLMPALGRVGVSRKIEDDQVRRRLRST 236
Query: 351 AKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
L P +G G +RT + +EL +D+ LL WK I+ K+ D
Sbjct: 237 LLELSPPKGLGFIVRTAGQERNKKELSRDMAYLLRLWKVIVRRLKNTTGPCD-------- 288
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
++ + ++D F+ V + VDS Y +LQ + P +R++ Y+ + PL
Sbjct: 289 --IYEESDMIIRTIRDIFSSDVDSIYVDSEPAYERAKEFLQLVMPRHVNRLKKYESKDPL 346
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F K++++EEI + + VPL GGS+VI+QTEALV+IDVN G+ F + + E+A +N
Sbjct: 347 FHKYHLDEEIARINQREVPLRRGGSIVIDQTEALVAIDVNSGN--FRYDGTAEEAAYQLN 404
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
+ AAK+IAR+LRLRD+GG++V DFIDM + ++R V ++ +V+RDR+ K+ + S G
Sbjct: 405 MMAAKEIARQLRLRDLGGVVVNDFIDMRREKHRRNVERALRDSVKRDRARTKILKTSPFG 464
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYN 643
L+E+TR+R+RPS+ + + C CC+G G V++ E+ + E+ R+L++ +++
Sbjct: 465 LIEMTRQRIRPSLKRSVFKDCPCCKGRGVVKSAES----MAIEVVRMLLAAAHH 514
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN S RIA++ED L E LE + ++Y GVV L P++ AFV+ G
Sbjct: 5 MLINVSQPEECRIAIVEDGILEEFYLERTSQDNYVGNIYKGVVVNLEPSIQAAFVDFGVG 64
Query: 138 RPSLMDI 144
+ + I
Sbjct: 65 KNGFLHI 71
>gi|52425677|ref|YP_088814.1| CafA protein [Mannheimia succiniciproducens MBEL55E]
gi|52307729|gb|AAU38229.1| CafA protein [Mannheimia succiniciproducens MBEL55E]
Length = 960
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 222/403 (55%), Gaps = 38/403 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------IKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLDVPEGVGLIVRTAGVGKSSEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
R++LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 ISRIKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG+V
Sbjct: 370 RARIQISRISRFGLLEMSRQRISPSLGESSHHICPRCQGTGKV 412
>gi|59712355|ref|YP_205131.1| hypothetical protein VF_1748 [Vibrio fischeri ES114]
gi|59480456|gb|AAW86243.1| rne [Vibrio fischeri ES114]
Length = 994
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 152/420 (36%), Positives = 232/420 (55%), Gaps = 32/420 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + + PQG + P K L+ +G +
Sbjct: 54 EAAFVDY-GADRH------GFLPLK----EIAKEYFPQGY-TYQGRPNIKDVLK--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W+ + +HA + A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWEAV-KHASESNQA---------PFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DSP+ + ++Q I PD RV+LY+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPDFLSRVKLYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFEREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+ PS+ C C GTG V E+ + + RL+ +S +T + +P
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVVRDNES----LALSVLRLIEEESLKDNTTQVLAVVP 443
>gi|378952063|ref|YP_005209551.1| ribonuclease E [Pseudomonas fluorescens F113]
gi|359762077|gb|AEV64156.1| Ribonuclease E [Pseudomonas fluorescens F113]
Length = 1060
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 51 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 95 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 155 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 265 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 383 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 412
>gi|423094246|ref|ZP_17082042.1| ribonuclease E [Pseudomonas fluorescens Q2-87]
gi|397888936|gb|EJL05419.1| ribonuclease E [Pseudomonas fluorescens Q2-87]
Length = 1073
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|359442984|ref|ZP_09232839.1| ribonuclease E [Pseudoalteromonas sp. BSi20429]
gi|358035192|dbj|GAA69088.1| ribonuclease E [Pseudoalteromonas sp. BSi20429]
Length = 1044
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 206/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA
Sbjct: 154 ALGRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIRQAADSAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ PC C G G + + E+ I I RL+ ++ +T
Sbjct: 382 GLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNES----IALSILRLIEEEAIKDNTAQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 VNAQVP 443
>gi|398988282|ref|ZP_10692329.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM24]
gi|399011007|ref|ZP_10713340.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM16]
gi|398118345|gb|EJM08076.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM16]
gi|398149780|gb|EJM38415.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM24]
Length = 1073
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|424924324|ref|ZP_18347685.1| ribonuclease [Pseudomonas fluorescens R124]
gi|404305484|gb|EJZ59446.1| ribonuclease [Pseudomonas fluorescens R124]
Length = 1078
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|289671957|ref|ZP_06492847.1| ribonuclease E, partial [Pseudomonas syringae pv. syringae FF5]
Length = 746
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/374 (36%), Positives = 216/374 (57%), Gaps = 23/374 (6%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E +GF P K E+ + P+G + K + +G +VIVQV KE G KG
Sbjct: 1 ERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQEVIVQVEKEERGNKGAA 51
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGH 370
LT + L R+ +L+ + R G +SR+I G ER L+ + + P GL +RT G
Sbjct: 52 LTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGR 111
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
S EE+Q DL+ LL W I E + ++ + P L+++ + ++DY +
Sbjct: 112 SSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQESNVIIRAIRDYLRQD 161
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++DS E ++++ + P +++LY+ +PLF++F IE +I + V LP
Sbjct: 162 IGEVLIDSIEAQEEALTFIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELP 221
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GGS+VI+ TEALVSID+N GS E+ L NL AA++IAR+LRLRDIGG+IV
Sbjct: 222 SGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAEEIARQLRLRDIGGLIV 279
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDM N+R V E+V++++E DR+ V++ +SR GL+E++R+R+RPS+ C
Sbjct: 280 IDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGLLEMSRQRLRPSLGESSGIVC 339
Query: 611 TCCQGTGRVEALET 624
C GTG + +E+
Sbjct: 340 PRCNGTGIIRDVES 353
>gi|323144881|ref|ZP_08079447.1| S1 RNA binding domain protein [Succinatimonas hippei YIT 12066]
gi|322415348|gb|EFY06116.1| hypothetical protein HMPREF9444_02145 [Succinatimonas hippei YIT
12066]
Length = 941
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 148/399 (37%), Positives = 219/399 (54%), Gaps = 30/399 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F D+ E +GF P K + + +PQGT S H
Sbjct: 37 NIYKGIITRIEPSLEAAFVDY-------GMERHGFLPLK----EIAREYYPQGTNFSDHA 85
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+++G +VIVQ+ KE G KG LT Y L + +L+ + R G +SR+I G
Sbjct: 86 ---AMKAALREGQEVIVQIEKEERGQKGAALTTYISLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK + + P+G G+ +RT G S EEL DL L W+ I + A
Sbjct: 143 EERAELKEALEGIDIPQGMGVIVRTAGVGKSSEELSWDLSILTKLWEMIKKAA------- 195
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G A P L+H+ L ++DY + ++++D + ++ Y++ + P+ +V
Sbjct: 196 --GTRPA-PFLIHQESSIALRAIRDYLRPDIGEILIDDRNVFEQIRHYVELVRPEFTQKV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY IPLF KF IE +I + + V LP+GG++VI+ TEAL SIDVN G
Sbjct: 253 HLYASDIPLFSKFQIESQIESAYQREVRLPSGGAIVIDPTEALTSIDVNSAKAT--RGGD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L N+ AA++IAR+LRLRDIGG+IV+DFIDM N+R + +++AV +DR+ +
Sbjct: 311 IEETALQTNIEAAEEIARQLRLRDIGGLIVIDFIDMTPIKNQREIENRMREAVRQDRARI 370
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+ S +SR GL+E++R+R+RPS+ S C CQG G V
Sbjct: 371 QFSRISRFGLLELSRQRLRPSLEESSSHVCPMCQGQGTV 409
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 42/68 (61%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + + ++Y G++T++ P++ AFV+ G
Sbjct: 1 MLINATQQEEVRVALVDGQKLYDLDIESPQHANKKANIYKGIITRIEPSLEAAFVDYGME 60
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 61 RHGFLPLK 68
>gi|343496517|ref|ZP_08734613.1| ribonuclease E [Vibrio nigripulchritudo ATCC 27043]
gi|342821130|gb|EGU55924.1| ribonuclease E [Vibrio nigripulchritudo ATCC 27043]
Length = 991
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 216/385 (56%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K E+ D P+G + P K LQ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIAKDYF---PEGY-TYQGRPSIKEVLQ--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I E + + A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKEASDA----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKQHIQLVRPDFINRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|104780775|ref|YP_607273.1| ribonuclease E Rne [Pseudomonas entomophila L48]
gi|95109762|emb|CAK14467.1| putative ribonuclease E Rne [Pseudomonas entomophila L48]
Length = 1075
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 144/390 (36%), Positives = 217/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKPPEGRVNIKEV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLT 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E ++ + P L+++
Sbjct: 158 VPGDMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEASQ----------DRVAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +V+LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIRQVMPQYASKVKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E V++ +E DR+ V+V +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEERVRECLEADRARVQVGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCSGTGIIRDVES 415
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRIEPSLEAAFVDFGSE 63
Query: 138 RPSLMDIKHY-REPFIFPP 155
R + +K RE F PP
Sbjct: 64 RHGFLPLKEISREYFKKPP 82
>gi|392534507|ref|ZP_10281644.1| RNase E [Pseudoalteromonas arctica A 37-1-2]
Length = 1058
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 206/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA
Sbjct: 154 ALGRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIRQAADSAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ PC C G G + + E+ I I RL+ ++ +T
Sbjct: 382 GLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNES----IALSILRLIEEEAIKDNTAQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 VNAQVP 443
>gi|56478531|ref|YP_160120.1| ribonuclease E (RNase E) [Aromatoleum aromaticum EbN1]
gi|56314574|emb|CAI09219.1| ribonuclease E (RNase E) [Aromatoleum aromaticum EbN1]
Length = 1007
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 150/419 (35%), Positives = 232/419 (55%), Gaps = 36/419 (8%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ ++I EP EA F D+ GE +GF P K + S
Sbjct: 26 DLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY-------GGERHGFLPFK----EIS 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
T G K + +++G ++IVQV K+ G KG LT Y L R+ +L+
Sbjct: 75 RTYFAPGADAGKV----RIQEALKEGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMP 130
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ERT L+ + L+ P G L RT A G + EELQ DL LL W
Sbjct: 131 NNPRGGGVSRRVEGDERTELRDVMDQLEIPSGMSLIARTAAIGRNAEELQWDLNYLLQLW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ I A+S + A L+++ + ++DYF ++ ++++D+ Y +
Sbjct: 191 RAIDGAAQSQSGA----------FLIYQEGSLVIRAIRDYFQPEIGEILIDTDDVYEQAR 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P +RV+ Y +PLF +F IE +I + S++V LP+GG++VI+ TEALVSI
Sbjct: 241 QFMSHVMPANVNRVKRYSDDVPLFSRFQIEHQIESAYSRQVTLPSGGAVVIDHTEALVSI 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G+ E+ NL AA++IAR+LRLRD+GG+IV+DFIDM N+R V
Sbjct: 301 DVNSGRST--KGADIEETAFRTNLEAAEEIARQLRLRDLGGLIVIDFIDMESQKNQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ A+ DR+ V+ ++SR GL+E++R+R+RP++ PC C GTG + + E+S
Sbjct: 359 GLLRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESS 417
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYGGE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K + P
Sbjct: 64 RHGFLPFKEISRTYFAP 80
>gi|423686524|ref|ZP_17661332.1| ribonuclease E [Vibrio fischeri SR5]
gi|371494592|gb|EHN70190.1| ribonuclease E [Vibrio fischeri SR5]
Length = 991
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 152/420 (36%), Positives = 232/420 (55%), Gaps = 32/420 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + + PQG + P K L+ +G +
Sbjct: 51 EAAFVDY-GADRH------GFLPLK----EIAKEYFPQGY-TYQGRPNIKDVLK--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W+ + +HA + A P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWEAV-KHASESNQA---------PFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DSP+ + ++Q I PD RV+LY+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPDFLSRVKLYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFEREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+ PS+ C C GTG V E+ + + RL+ +S +T + +P
Sbjct: 385 RQRLSPSLAEASHHICPRCTGTGVVRDNES----LALSVLRLIEEESLKDNTTQVLAVVP 440
>gi|313202748|ref|YP_004041405.1| ribonuclease, rne/rng family [Paludibacter propionicigenes WB4]
gi|312442064|gb|ADQ78420.1| ribonuclease, Rne/Rng family [Paludibacter propionicigenes WB4]
Length = 524
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 159/441 (36%), Positives = 248/441 (56%), Gaps = 50/441 (11%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N + +D G D + FL H+LD SN F + ++ Q D
Sbjct: 46 VKKIMPGLNAAFVDVG---YDKDAFL---HYLDLGSN--FNTLTQFT-------TQALSD 90
Query: 279 SKHTPG-EKTWLQ------------VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWI 325
K TP +KT LQ ++ G ++VQV KE + TKGP LTA + RF +
Sbjct: 91 RKKTPAIQKTKLQPEIEKNGSINDILKPGQDILVQVTKEPISTKGPRLTAEISIAGRFLV 150
Query: 326 LITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLS 384
LI D++ VS+KI T ER RLK + ++++P+GFG+ +RTVA + EL +L+ L+
Sbjct: 151 LIPFADKVSVSQKIKTEEERQRLKQLIQSIKPKGFGVIVRTVAEEKKVAELDNELKILVK 210
Query: 385 TWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHE 444
W+ A+ + +G IL +G+T+ I++D F+ K + ++ + E
Sbjct: 211 RWEE--------AVIKTQQTKGVSLIL--EELGRTVGIIRDLFSPSFKHIHINDQAVFAE 260
Query: 445 VTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALV 504
V Y+ IAPD D V+LY +P++D F I ++I + K V NG L+IE TEAL
Sbjct: 261 VRDYVNLIAPDRKDIVKLYQDELPIYDSFGITKQIKSAFGKTVSFKNGAYLIIEHTEALH 320
Query: 505 SIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRL 564
+DVN G+ G+ +E LDVNLAAA +IAR+LRLRD+GGIIVVDFIDM + N++
Sbjct: 321 VVDVNSGNRS-KAGNGQEDNALDVNLAAADEIARQLRLRDMGGIIVVDFIDMHETENRQK 379
Query: 565 VYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGR------ 618
+++ +++ + DR+ + LS+ GL+++TR+RVRP + I E C C G G+
Sbjct: 380 LFDRMRENMANDRAKHNILPLSKFGLLQMTRQRVRPVIHIDIEETCPTCFGHGKTKPSIL 439
Query: 619 -VEALETSFSKIEQEISRLLV 638
+ LE SKI+ +++LL+
Sbjct: 440 FTDQLE---SKIDYLVNKLLI 457
Score = 45.1 bits (105), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVEL E + ++YLG V K++P + AFV++G + + + HY
Sbjct: 16 IALLEDKRLVELNQEGREEQFAVGNIYLGRVKKIMPGLNAAFVDVGYDKDAFL---HY 70
>gi|398968999|ref|ZP_10682646.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM30]
gi|398142906|gb|EJM31793.1| ribonuclease, Rne/Rng family [Pseudomonas sp. GM30]
Length = 1077
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 220/390 (56%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GSERHGFLPLK-EISREYFKKAPEGRVNIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ + +
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLV 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EE+Q DL+ LL W I E + ++ + P L+++
Sbjct: 158 APADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E ++++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA+
Sbjct: 268 IESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V E+V++ +E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRECLEADRARVQIGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C GTG + +E+
Sbjct: 386 RQRLRPSLGESSGIVCPRCNGTGIIRDVES 415
>gi|387771087|ref|ZP_10127259.1| ribonuclease E [Pasteurella bettyae CCUG 2042]
gi|386903006|gb|EIJ67827.1| ribonuclease E [Pasteurella bettyae CCUG 2042]
Length = 965
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 200/331 (60%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
VQ+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 VQEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + A
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQAADGRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL++ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALIAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG+V
Sbjct: 382 GLLEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|220934526|ref|YP_002513425.1| ribonuclease E [Thioalkalivibrio sulfidophilus HL-EbGr7]
gi|219995836|gb|ACL72438.1| ribonuclease E [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 938
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 242/439 (55%), Gaps = 43/439 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGT-K 277
NV +++ EP EA F ++ E +GF P ++S +P PQG+ K
Sbjct: 40 NVYKAVVTRVEPSLEAAFVNY-------GAERHGFLPLKEIARSFLPGAGDEDSPQGSIK 92
Query: 278 DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VS 336
D V++G ++IVQV KE G KG LT + L R+ +L+ + R G VS
Sbjct: 93 D-----------LVKEGMELIVQVEKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGVS 141
Query: 337 RKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
R+I G +R+ ++ L+ P+G GL RT G +EELQ DLE L + W I E A
Sbjct: 142 RRIEGEDRSEIREALSQLEVPQGMGLIARTAGVGRGVEELQWDLEYLKTLWAAITEAA-- 199
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
E +G P L+++ + ++D+ + +++VD P Y + ++Q + P+
Sbjct: 200 ------EKRKG--PFLIYQESNVIIRALRDHLRNDIAEIIVDVPAVYQQAQEFMQQVMPN 251
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
+++LY++ +PLF+++ IE +I + V LP+GG++VI+ TEAL+SIDVN
Sbjct: 252 NLRKLKLYEEHVPLFNRYQIESQIEAAFQREVSLPSGGAIVIDHTEALISIDVNSARAT- 310
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
GS E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM N+R V ++ A+E
Sbjct: 311 -KGSDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMGPAKNQREVENRLRDALEM 369
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
DR+ V+V +SR GL+E++R+R+RPS+ C C G G + ++E+ + + R
Sbjct: 370 DRARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCSGHGHIRSVES----LALSVLR 425
Query: 636 LLVSKSYNQSTFYFIRHIP 654
L+ ++ T + +P
Sbjct: 426 LIEEEAMKDKTGRVLAQLP 444
Score = 44.3 bits (103), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
ILIN++ R+A+++ +KL +L +E + +VY VVT++ P++ AFVN G
Sbjct: 4 ILINATQPEELRVAMVDGQKLYDLDIEVPSREQKKANVYKAVVTRVEPSLEAAFVNYGAE 63
Query: 138 RPSLMDIKHYREPFI 152
R + +K F+
Sbjct: 64 RHGFLPLKEIARSFL 78
>gi|167753147|ref|ZP_02425274.1| hypothetical protein ALIPUT_01418 [Alistipes putredinis DSM 17216]
gi|167659461|gb|EDS03591.1| S1 RNA binding domain protein [Alistipes putredinis DSM 17216]
Length = 516
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 145/422 (34%), Positives = 232/422 (54%), Gaps = 21/422 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESN---GFFPSKSEVPDDSHTSHPQG 275
V +++ +N + ++ G + F +L+ + P K + D+ P
Sbjct: 46 VRKIMPGLNAAFVNIGHEKDAFIHYLDLGSQFSSLQKLVASYQPGKRGIRLDAMKLEPPI 105
Query: 276 TKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGV 335
K K ++LQV G V+VQV KE + TKGP LTA L R +L+ ++ +
Sbjct: 106 EKSGKIG----SYLQV--GQTVMVQVAKEAISTKGPRLTADISLAGRNVVLVPFSSKVFL 159
Query: 336 SRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAK 394
S+KI + E+ RLK IA + P+ FG+ IRT A ++++D+ LL W+ +++ +
Sbjct: 160 SQKIRSAEEKKRLKGIAAAVLPKNFGVIIRTAAVEAKDSDIEQDIRSLLDKWQKTLQNIR 219
Query: 395 SAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAP 454
+ P L M + +I++D ++VVD YHE+ +Y++ I P
Sbjct: 220 ----------KNPAPAQLMSEMNRANTIIRDSLGGAFSQIVVDDEAMYHEIQNYIRQIEP 269
Query: 455 DLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGM 514
V+LY +P+FD F+I ++I ++ +K V L G L+IE TEA+ IDVN G+
Sbjct: 270 QSEKLVKLYKGNVPIFDNFDISKQIKSLFAKYVSLRRGAYLIIEHTEAMNVIDVNSGNRT 329
Query: 515 FGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVE 574
+E+ DVNLAAA++IAR+LRLRD+GGI+++DFIDM +N++L+YEE+ K +
Sbjct: 330 KAE-DDQEQTAFDVNLAAAREIARQLRLRDLGGIVIIDFIDMHKAANRQLLYEEMNKLMA 388
Query: 575 RDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEIS 634
D++ V L++ GLM+ITR+RVRP +++ C C GTGR+E KIE +IS
Sbjct: 389 TDKAKHTVLPLTKFGLMQITRQRVRPVAVQDVTDVCPTCNGTGRIEPTVLLDKKIENKIS 448
Query: 635 RL 636
L
Sbjct: 449 YL 450
Score = 45.4 bits (106), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+ ED+ LVEL E ++ +YLG V K++P + AFVNIG+ + + + HY
Sbjct: 16 IALCEDKVLVELNKEQCQTGFAVGDIYLGKVRKIMPGLNAAFVNIGHEKDAFI---HY 70
>gi|414068910|ref|ZP_11404907.1| ribonuclease E [Pseudoalteromonas sp. Bsw20308]
gi|410808749|gb|EKS14718.1| ribonuclease E [Pseudoalteromonas sp. Bsw20308]
Length = 1061
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 206/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA
Sbjct: 154 ALGRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIGQAADSAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ PC C G G + + E+ I I RL+ ++ +T
Sbjct: 382 GLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNES----IALSILRLIEEEAIKDNTTQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 VNAQVP 443
>gi|299140822|ref|ZP_07033960.1| ribonuclease G [Prevotella oris C735]
gi|298577788|gb|EFI49656.1| ribonuclease G [Prevotella oris C735]
Length = 524
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 251/459 (54%), Gaps = 29/459 (6%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP----Q 274
V +++ +N +D G F +L+ L + N + +V D +P Q
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYLKQVNSDRKRLYPFSKAQ 101
Query: 275 GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 102 RLPDLKKDGSVQQVLSV--GQEVLVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +++ L W++ +
Sbjct: 160 VSSKIKSGEERARLKQLIYSIKPKNCGVIVRTVAEGKRVAELDTEMKVLTKRWEDAILKT 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ + P L+ G+ +++++D FN + + V++ Y+EV YL IA
Sbjct: 220 QK---------QQKRPQLVFEETGRAIAMLRDLFNPSFENIYVNNEEVYNEVKHYLTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+ Y ++P+FD FN+ ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PEKASIVKHYTGKVPIFDNFNVTKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 SKSENGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEI 633
++DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG++ + ++E++I
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDVNVEETCPTCNGTGKIRSSILFTDQLERKI 449
Query: 634 SRLL----VSKSYNQSTFYFIRHIPK----RRKHLKLEY 664
+RL+ ++K Y Y +I K R+ +L+Y
Sbjct: 450 ARLVNKIGIAKFYLHVHPYVAAYINKGFISLRRKWQLKY 488
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE EP +++ ++Y V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKNLVEYQNEPRQASFSVGNIYAAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|117927963|ref|YP_872514.1| ribonuclease G [Acidothermus cellulolyticus 11B]
gi|117648426|gb|ABK52528.1| RNAse G [Acidothermus cellulolyticus 11B]
Length = 702
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L RF + + +G+SRK+ ER RLK I
Sbjct: 332 LKPGQTVVVQVTKDPIGHKGARLTSQISLPGRFLVFVPEGSMMGISRKLPDTERNRLKAI 391
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + PEG G+ +RT A G S EEL +D+ L++ W++I + A+S G P
Sbjct: 392 LRKIMPEGAGVIVRTAAEGASEEELARDIARLMAQWEDIQKKAES----------GTAPA 441
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE ++VV + V +Y+ +APDL R+ + +F
Sbjct: 442 LLYAEPDLTIRVVRDIFNEDFAQLVVQGDSEWDMVEAYVAHVAPDLLPRISHWTSDEDVF 501
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L +RV LP+GG L+I++TEA+V IDVN G G G + E+ + NL
Sbjct: 502 AHYRIDEQLAKALDRRVWLPSGGYLIIDRTEAMVVIDVNTGR-FVGKGGNLEETVTKTNL 560
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 561 EAAEEIVRQLRLRDIGGIIVIDFIDMLLESNRELVLRRLVECLGRDRTKHQVAEVTSLGL 620
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SEPC C G G
Sbjct: 621 VQMTRKRVGSGLLEAFSEPCEVCGGRG 647
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLG 118
+G ++++ F++ + + QR I VLED LVE + +N +VYLG
Sbjct: 226 RGMILTEAEFLARRESVERVMVVRQRGDLTQIGVLEDGILVEHYVSTTSANRIVGNVYLG 285
Query: 119 VVTKLVPNMGGAFVNIGNSRPSLM 142
V ++P M AFV+IG R +++
Sbjct: 286 RVQNVLPGMEAAFVDIGKGRNAVL 309
>gi|255038178|ref|YP_003088799.1| ribonuclease, Rne/Rng family [Dyadobacter fermentans DSM 18053]
gi|254950934|gb|ACT95634.1| ribonuclease, Rne/Rng family [Dyadobacter fermentans DSM 18053]
Length = 520
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 204/332 (61%), Gaps = 12/332 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKIT-GVERTRLKV 349
+ K ++VQ+VKE + TKGP L+ + R+ +L+ + + +S+KIT ER RL+
Sbjct: 116 LSKNQPILVQIVKEPISTKGPRLSCDISIAGRYIVLVPFSNSVNLSKKITDKQERNRLQR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P+ FG+ IRTVA G +EEL KDL+ L W+N ++ K A + V G
Sbjct: 176 LMSSIKPQNFGVIIRTVAMGKDVEELNKDLQDCLDKWENGIKALKDAK--PRDRVIGE-- 231
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
M + SI++D NE + VDS Y ++ +Y+ +IAP+ + + L++ + L
Sbjct: 232 ------MNRASSIIRDMLNESFDSITVDSKEVYDDIKAYIHNIAPEKENILRLHNGKNKL 285
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F++F +E++I ++ + V LPNGG L+IE TEAL IDVN G+ +E L VN
Sbjct: 286 FEQFGLEKQIKSLFGRSVSLPNGGYLIIEHTEALHVIDVNSGNKS-NSEEDQEATALSVN 344
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AAK+IAR+LRLRD+GGIIVVDFIDM NKR +++ ++ ++ DRS V LS+ G
Sbjct: 345 LEAAKEIARQLRLRDMGGIIVVDFIDMKKAENKRTLFDVMRDEMKGDRSKYTVLPLSKFG 404
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA 621
L++ITR+RVRP + + E C C GTG ++A
Sbjct: 405 LLQITRQRVRPEMNIVTRETCPTCGGTGTIQA 436
Score = 45.4 bits (106), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LINS+ +RIA+L+D++L+E +E + +YLG V KLV + AFV+
Sbjct: 1 MSNELLINST-QKGERIALLQDKRLLEYHVETPDQSFTVGDIYLGTVRKLVAGLNAAFVD 59
Query: 134 IGNSRPSLMDIKHY 147
+G + + + HY
Sbjct: 60 VGFEKDAFL---HY 70
>gi|209695669|ref|YP_002263598.1| ribonuclease E [Aliivibrio salmonicida LFI1238]
gi|208009621|emb|CAQ79917.1| ribonuclease E [Aliivibrio salmonicida LFI1238]
Length = 1015
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 152/420 (36%), Positives = 232/420 (55%), Gaps = 32/420 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + + PQG + P K L+ +G +
Sbjct: 54 EAAFVDY-GADRH------GFLPLK----EIAKEYFPQGY-TYQGRPNIKDVLK--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W+ + +HA + A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWEAV-KHASESNQA---------PFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DSP+ + ++Q I PD RV+LY+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPDFLSRVKLYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFDREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+ PS+ C C GTG V E+ + + RL+ +S +T + +P
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVVRDNES----LALSVLRLIEEESLKDNTTQVLAVVP 443
>gi|359406323|ref|ZP_09199021.1| S1 RNA binding domain protein [Prevotella stercorea DSM 18206]
gi|357556385|gb|EHJ37994.1| S1 RNA binding domain protein [Prevotella stercorea DSM 18206]
Length = 524
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 150/440 (34%), Positives = 246/440 (55%), Gaps = 25/440 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGT 276
V +++ +N S +D G F +L+ L + N + +V D +P + T
Sbjct: 46 VKKLMPGLNASFVDVGYERDAFLHYLD----LGNQFNSYEKYLRQVQSDRKKLYPFAKAT 101
Query: 277 K--DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
K D + ++ L V G +V+VQ+VKE + TKGP LT R+ +L+ D++
Sbjct: 102 KQPDLRKDGSVQSTLTV--GQEVLVQIVKEPISTKGPRLTGELSFAGRYLVLMPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L W++ +
Sbjct: 160 VSTKIKSGEERARLKQLINSIKPKNCGVIVRTVAEGKRVAELDAELKVLTKRWEDALIKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ P L+ G+ +++++D FN + + V+ +HEV +Y+ IA
Sbjct: 220 QKTQ---------KRPQLIFEETGRAVALLRDLFNPTYENIYVNDENVFHEVKNYVSLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ + V+LY +P+FD FN+ ++I + K V +G L+IE TEAL +DVN G+
Sbjct: 271 PEKANIVKLYTGTVPIFDNFNVTKQIKSSFGKTVNYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKA-ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKA 572
H + ++A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++L+YE + K
Sbjct: 331 --SHSDNGQEANALDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQLLYERMCKN 388
Query: 573 VERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQE 632
+++DR+ + LS+ GLM+ITR+RVRP++ + E C C G G++++ ++E +
Sbjct: 389 MQKDRARHNILPLSKFGLMQITRQRVRPAMDVNVEEVCPTCFGKGKIKSSIIFTDQLESK 448
Query: 633 ISRLLVSKSYNQSTFYFIRH 652
I RL+ TFY H
Sbjct: 449 IDRLV--NKIGIKTFYLHVH 466
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP + ++Y+ V KL+P + +FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQTEPRSVSFSVGNIYVAKVKKLMPGLNASFVDVGYERDAFL---HY 70
>gi|189463295|ref|ZP_03012080.1| hypothetical protein BACCOP_04012 [Bacteroides coprocola DSM 17136]
gi|189430025|gb|EDU99009.1| S1 RNA binding domain protein [Bacteroides coprocola DSM 17136]
Length = 524
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 217/355 (61%), Gaps = 15/355 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W++ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEDTISKVQKAT---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ Y+EV Y+ IAP+ V+LY ++P+
Sbjct: 227 SLVYEETSRTVAMLRDLFNPSYENIYVNDESVYNEVKDYVTLIAPERSGIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K V +G L+IE TEAL +DVN G+ G+ +E LDVN
Sbjct: 287 FDNFAITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRS-KSGNGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
LM+ITR+RVRP++ E C C G G+++ +T SKI+ +++L V K
Sbjct: 406 LMQITRQRVRPAMDVNTDEDCPTCFGKGKIKPSILFTDTLESKIDYLVNKLKVKK 460
>gi|224026369|ref|ZP_03644735.1| hypothetical protein BACCOPRO_03125 [Bacteroides coprophilus DSM
18228]
gi|224019605|gb|EEF77603.1| hypothetical protein BACCOPRO_03125 [Bacteroides coprophilus DSM
18228]
Length = 524
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 217/355 (61%), Gaps = 15/355 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSNEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAT---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ Y+EV Y+ IAP+ + V+LY ++P+
Sbjct: 227 SLVYEETSRTVAMLRDLFNPSYENIYVNDEAVYNEVKDYVALIAPERVNIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ G+ +E LDVN
Sbjct: 287 FDNFAITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSGNGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
LM+ITR+RVRP++ E C C G G+++ +T SKI+ +++L V K
Sbjct: 406 LMQITRQRVRPAMDVNTDEDCPTCFGKGKIKPSILFTDTLESKIDYLVNKLKVKK 460
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++Y+G V K++P + FV++G + + + HY
Sbjct: 16 IALLEDKNLVELQKEERNLSFSVGNMYVGKVKKIMPGLNACFVDVGFEKDAFL---HY 70
>gi|119503336|ref|ZP_01625420.1| DNA polymerase III delta prime subunit [marine gamma
proteobacterium HTCC2080]
gi|119460982|gb|EAW42073.1| DNA polymerase III delta prime subunit [marine gamma
proteobacterium HTCC2080]
Length = 973
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 226/401 (56%), Gaps = 33/401 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
NV + I EP EA F DF E +GF P K ++ P+G
Sbjct: 40 NVYKAKITRVEPSLEAAFVDF-------GAERHGFLPLKEIAHQYYRSTAPEGEG----- 87
Query: 283 PGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKI 339
KT ++ +++GT+VIVQV KE GTKG LT Y L R+ +L+ + + G +SR+I
Sbjct: 88 ---KTRIKDVLKEGTEVIVQVDKEERGTKGAALTTYISLAGRYMVLMPNNPKAGGISRRI 144
Query: 340 TGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAAL 398
G +RT L+ L P+G G+ IRT G S EELQ DL+ LL W +I +
Sbjct: 145 EGDDRTELRDALSQLNIPDGMGVIIRTAGVGRSPEELQWDLDYLLQLWSSI-------SS 197
Query: 399 AADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCD 458
A+DE P+LL++ + ++DY + V ++++D + + ++ + P
Sbjct: 198 ASDEN---KAPVLLYQESDVIIRSIRDYLRDDVDQVLIDDKAAWQQAHDFVTMVMPKYAQ 254
Query: 459 RVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHG 518
R+ Y+ PLF++F +E +I + + V LP+GGS+VI+ TEAL+SID+N G
Sbjct: 255 RIRYYEDATPLFNRFQVEGQIESAFQREVRLPSGGSIVIDPTEALISIDINSARAT--KG 312
Query: 519 SSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRS 578
S E+ L NL AA ++AR+LRLRD+GG++V+DFIDM + N+R V ++ A+E DR+
Sbjct: 313 SDIEQTALQTNLEAADEVARQLRLRDMGGLVVIDFIDMNANKNQRAVENRIRDALEVDRA 372
Query: 579 MVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
V+V +SR GL+E++R+R+RPS+ + + C C G G +
Sbjct: 373 RVQVGRISRFGLLEMSRQRLRPSLGEISAMVCPRCTGKGTI 413
>gi|197335030|ref|YP_002156570.1| ribonuclease E [Vibrio fischeri MJ11]
gi|197316520|gb|ACH65967.1| ribonuclease E [Vibrio fischeri MJ11]
Length = 995
Score = 245 bits (626), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 152/420 (36%), Positives = 232/420 (55%), Gaps = 32/420 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + + PQG + P K L+ +G +
Sbjct: 54 EAAFVDY-GADRH------GFLPLK----EIAKEYFPQGY-TYQGRPNIKDVLK--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W+ + +HA + A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWEAV-KHASESNQA---------PFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DSP+ + ++Q I PD RV+LY+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSPKIFDRARQHIQLIRPDFLSRVKLYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFEREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMREAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+ PS+ C C GTG V E+ + + RL+ +S +T + +P
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVVRDNES----LALSVLRLIEEESLKDNTTQVLAVVP 443
>gi|392309498|ref|ZP_10272032.1| RNase E [Pseudoalteromonas citrea NCIMB 1889]
Length = 1054
Score = 245 bits (626), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 148/424 (34%), Positives = 230/424 (54%), Gaps = 36/424 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ E +GF P K + + T P G +T + ++ +++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAKTYFPSG-----YTFNGRPNIKDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQV KE G KG LT + + + +L+ + R G +SR+I G ER LK +++
Sbjct: 98 QEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERIELKEALSR 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL+ LL W+ I E A S G P L+
Sbjct: 158 LDLPKGMGLIVRTAGVGKSFEELEYDLKALLVHWQAIQEAADS----------GKAPFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D R + E ++++ PD RV+LY +PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKARVFEEAKAHIERFRPDFMSRVKLYQNDVPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAVRPDRARVQIGKISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRH 652
++R+R+RPS+ C C G G + + E+ I I RL+ ++ ++T
Sbjct: 386 MSRQRLRPSLGEASQHSCPRCNGQGTIRSNES----IALSILRLIEEEAIKENTAQVNAQ 441
Query: 653 IPKR 656
+P R
Sbjct: 442 VPVR 445
>gi|399114591|emb|CCG17385.1| ribonuclease E [Taylorella equigenitalis 14/56]
Length = 953
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 150/434 (34%), Positives = 241/434 (55%), Gaps = 37/434 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F D+ + H GF P K EV S H GT S+ +
Sbjct: 37 NIYKGVITRIEPSLEACFVDYGQERH-------GFLPFK-EV---SRNYHKSGTDHSRIS 85
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
L+V G ++I+QV KE G KG LT Y L R+ +L+ + + G +SR+I
Sbjct: 86 EA----LEV--GQELIIQVEKEERGNKGAALTTYISLAGRYLVLMPNNPKGGGISRRIDW 139
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L+ PEG L RT G + EEL DL L+ WK I + A +
Sbjct: 140 EERQELREAMSHLELPEGMSLIARTAGIGRTTEELNWDLTYLMQLWKAIEDAANHYS--- 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
PIL+++ + ++DYF+ + ++++D+ Y +V +++QD+ PD ++
Sbjct: 197 -------APILIYQESSLVIRALRDYFSHDITEILIDTDEIYDQVNAFMQDVMPDNVAKI 249
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F +E +I S+ V LP+GGS+VI+ TEALV++DVN G
Sbjct: 250 KRYRHAVPLFSRFQVEHQIETAYSRHVHLPSGGSIVIDHTEALVAVDVNSARST--RGGD 307
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + N+ AA+++AR+LRLRD+GG+IV+DFIDM D N++ V ++K+A++ DR+ V
Sbjct: 308 IEETAMRTNIEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQKAVESKLKEAIQFDRARV 367
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSK 640
++ ++S+ GLME++R+R+RPS+ C C GTG + +E+S + RLL +
Sbjct: 368 QMGKISKFGLMELSRQRLRPSLNEGSHIICPRCNGTGAIRDIESSALN----VLRLLQEE 423
Query: 641 SYNQSTFYFIRHIP 654
+ ++T +P
Sbjct: 424 ALKENTAVVNAQVP 437
>gi|114320586|ref|YP_742269.1| ribonuclease E [Alkalilimnicola ehrlichii MLHE-1]
gi|114226980|gb|ABI56779.1| RNAse E [Alkalilimnicola ehrlichii MLHE-1]
Length = 1073
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 139/404 (34%), Positives = 231/404 (57%), Gaps = 24/404 (5%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E +GF P K P + + +G K P + V++G +V+VQV KE GTKG
Sbjct: 63 ERHGFLPFKEIAP----SYYREGLKADGGRPSIRD--AVREGQEVVVQVDKEERGTKGAA 116
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
LT Y L R+ +L+ + R G VSR+I G +R ++ + L PEG GL +RT G
Sbjct: 117 LTTYISLAGRYLVLMPNNPRAGGVSRRIEGSDRAEIREALRQLDVPEGMGLIVRTAGVGR 176
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
++EELQ DL+ LL W I + A++ + P L+++ + ++DY
Sbjct: 177 TVEELQWDLDYLLKLWSAIQKAAEARS----------APFLIYQESDVIIRALRDYLRSD 226
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++D P+ + + +++ + P +++ YD R+PLF ++ IE +I + + V LP
Sbjct: 227 IGEILIDDPQVFEKAVEFVEQVMPYNRQKLKYYDDRVPLFTRYQIESQIESAFQRDVRLP 286
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG++VI+ TEAL+SID+N GS E+ L NL AA +IAR+LRLRD+GG+IV
Sbjct: 287 SGGAIVIDHTEALISIDINSARAT--KGSDIEETALHTNLEAADEIARQLRLRDLGGLIV 344
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDM + N+R V +++AV+ DR+ V++ +SR GL+E++R+R+R S+ E C
Sbjct: 345 IDFIDMGPNRNQREVENRLREAVKADRARVQIGRISRFGLLEMSRQRLRSSLGESHQEVC 404
Query: 611 TCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
C G G V ++E+ + I R++ ++ + T + +P
Sbjct: 405 ARCGGQGTVRSVES----LALSILRIVEEEAMKEKTGTVLAQLP 444
>gi|309810421|ref|ZP_07704252.1| ribonuclease, Rne/Rng family [Dermacoccus sp. Ellin185]
gi|308435618|gb|EFP59419.1| ribonuclease, Rne/Rng family [Dermacoccus sp. Ellin185]
Length = 784
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 131/327 (40%), Positives = 200/327 (61%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I
Sbjct: 283 LKAGESVLVQVTKDPIGHKGARLTSQISLPGRFVVFVPGNSMTGISRKLPDTERARLKRI 342
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G+ +RT A G S EEL+ D+E L+ W+ I A++A P
Sbjct: 343 LKEVVPADAGVIVRTAAEGASEEELRADVERLMKMWERIQAKAETAN----------APS 392
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LLH T+ +++D FNE KMVV R ++EV +Y+ ++APDL +R+E ++ +F
Sbjct: 393 LLHGEPDLTVRVIRDVFNEDFAKMVVSGERAWNEVHTYISEVAPDLVERLEKWEGDEDVF 452
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ + ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + N+
Sbjct: 453 AEHRIDEQLAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKNNI 511
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIVVDFIDM ++N+ LV + + + RDR+ +V+E++ GL
Sbjct: 512 EAAEEIVRQLRLRDIGGIIVVDFIDMVLEANRELVVRRLLECLGRDRTKHQVAEVTSLGL 571
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + + SE C CQG G
Sbjct: 572 VQMTRKRVGAGLVEVFSETCESCQGRG 598
>gi|291439681|ref|ZP_06579071.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291342576|gb|EFE69532.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 1015
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 287 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 346
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L W++I + +K+ G P
Sbjct: 347 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQGQWEDIQKKSKN----------GNAPT 396
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV P + + Y+ +APDL DR++ + + +F
Sbjct: 397 LLYGEPDMTVRVVRDIFNEDFSKVVVSGPDAWETIHGYVSHVAPDLADRLQKWTSEVDVF 456
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 457 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 515
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 516 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 575
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 576 VQMTRKRVGQGLLESFSETCVHCNGRG 602
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 211 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 264
>gi|404448601|ref|ZP_11013594.1| ribonuclease, Rne/Rng family protein [Indibacter alkaliphilus LW1]
gi|403766222|gb|EJZ27097.1| ribonuclease, Rne/Rng family protein [Indibacter alkaliphilus LW1]
Length = 524
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 133/332 (40%), Positives = 200/332 (60%), Gaps = 12/332 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+ + +++VQVVKE + TKGP L+ + R+ +L+ D + VS+KI + ER RL
Sbjct: 117 LSRNNQILVQVVKEPISTKGPRLSCELSIAGRYLVLVPFSDTVNVSKKIRSAEERKRLVR 176
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P FG+ IRTVA S+ EL KDL LL+TW+ M+ S A D+ +
Sbjct: 177 LITSIKPANFGVIIRTVAESQSVTELDKDLRNLLTTWEEGMKKL-SKAKNRDKIIG---- 231
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
M SI++D NE + V+ Y ++ SY++ IAP+ V+L++ + L
Sbjct: 232 -----EMSMASSIIRDLLNESFDAITVEDELIYDQIRSYIRTIAPEKEKIVKLFNGKAKL 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+ F IE++I ++ + + LP GG L+IE TEAL IDVN G+ S +E L N
Sbjct: 287 FENFGIEKQIKSLFGQTISLPQGGYLIIEHTEALHVIDVNSGNKS-NQESDQEMTALKTN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AAK+IAR+LRLRD+GGIIV+DFIDM NK+ +++ +K ++ DRS V L++ G
Sbjct: 346 LVAAKEIARQLRLRDMGGIIVIDFIDMKKAENKKAIFDAMKSEMQDDRSKNTVLPLTKFG 405
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA 621
LM+ITR+RVRP V + E C C GTG+++A
Sbjct: 406 LMQITRQRVRPEVNIVTKETCPSCNGTGKIQA 437
Score = 46.6 bits (109), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST +LI+SS RIA+L+D+ LVEL E ++ + +YLG V K+V + AF++
Sbjct: 1 MSTELLIDSS-QNGSRIALLKDKNLVELHSEGGENQFKVGDIYLGTVRKIVNGLNAAFID 59
Query: 134 IGNSRPSLMDIKHYRE 149
+G + + + HY++
Sbjct: 60 VGYDKDAFL---HYQD 72
>gi|92113716|ref|YP_573644.1| ribonuclease E [Chromohalobacter salexigens DSM 3043]
gi|91796806|gb|ABE58945.1| RNAse E [Chromohalobacter salexigens DSM 3043]
Length = 1175
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 215/385 (55%), Gaps = 30/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + T P G + K +++G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFTKEPSGRPNIKEV--------LKEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G +R +LK + +
Sbjct: 98 VIVQVDKEERGNKGAALTTFISLAGRFLVLMPNNPRAGGISRRIEGDDRAQLKDAMGQLT 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ G+ +RT G S EELQ D++ L+ W+ I E A + + P L++R
Sbjct: 158 VPDKMGVIVRTAGIGRSPEELQWDMDYLVQVWEAITEEAG----------KRSAPFLIYR 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DSP + E +++ + P ++++LY +PLF +F
Sbjct: 208 ESNVIIRAMRDYLRHDIGEVLIDSPEVHEEALHFIRQVMPSYQNKIKLYADDVPLFSRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GG++VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 268 IESQIETAYQREVKLPSGGAVVIDHTEALVSIDINSARAT--RGSDIEETALQTNLEAAD 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N+R V V+ A++ DR+ V++ +SR GLME++
Sbjct: 326 EIARQLRLRDIGGLVVIDFIDMTPAKNQREVENRVRDALKLDRARVQIGRISRFGLMEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+RPS+ C C G G +
Sbjct: 386 RQRLRPSLGETSGVVCPRCNGQGTI 410
>gi|406936444|gb|EKD70163.1| hypothetical protein ACD_46C00616G0004 [uncultured bacterium]
Length = 784
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 148/390 (37%), Positives = 222/390 (56%), Gaps = 27/390 (6%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E E +GF P K +S+ +DS P L+ + +
Sbjct: 55 EAAFVDYGE-------ERHGFLPLKEVARSCFRSSY----EDSGRRPTISEVLE--EDQE 101
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
+IVQV KE G KG LT + L + +L+ + R G VSR+I G ER L + +LQ
Sbjct: 102 LIVQVEKEERGNKGAALTTFITLPGCYLVLMPNNPRAGGVSRRIEGEERDELHSLLGSLQ 161
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL IRT G + EELQ DLE LL W + AK + P L+++
Sbjct: 162 APDGMGLIIRTAGGGRTQEELQWDLEILLRLWDVVQRAAK----------DKPAPFLIYQ 211
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++D P + +V ++L+ I PD +RV+LY PLF +F
Sbjct: 212 EGNAVIRALRDYLRKDIDEILIDHPDVHEDVVNHLKLIRPDFVNRVKLYKDPTPLFTRFQ 271
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS++I+ TEALVSID+N G G +E A++ NL AA
Sbjct: 272 IESQIESAFQREVRLPSGGSIIIDHTEALVSIDINSAKSTKG-GDIEETALM-TNLEAAN 329
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM+ N+R V E ++KA+ DR+ V++ +SR GL+E++
Sbjct: 330 EIARQLRLRDIGGLIVIDFIDMSPVRNQREVEERLRKALAMDRARVQIGRISRFGLLEMS 389
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 390 RQRLRPSLGESTRVTCPRCLGQGTIRGIES 419
>gi|258516458|ref|YP_003192680.1| ribonuclease, Rne/Rng family [Desulfotomaculum acetoxidans DSM 771]
gi|257780163|gb|ACV64057.1| ribonuclease, Rne/Rng family [Desulfotomaculum acetoxidans DSM 771]
Length = 564
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 139/347 (40%), Positives = 216/347 (62%), Gaps = 14/347 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKV 349
+++G ++VQ+VKE +GTKGP +T + L R+ +L+ + D IG+SR+I ER RLK
Sbjct: 96 LKQGQDLVVQIVKEPIGTKGPRITTHITLPGRYLVLMPTVDYIGISRRIADEQERERLKE 155
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+A ++P GL +RTVA G S EEL +D+ L W+ I+ + G VP
Sbjct: 156 LAARVKPRDMGLIVRTVAEGVSEEELAQDVNVLAKLWRKIINRSN----------HGPVP 205
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LLHR + I++D F E V ++++DS Y V L I P L +V + D+R L
Sbjct: 206 NLLHRDLELVHRILRDIFTEDVDRLIIDSRYEYERVLELLDIIDPQLKIKVSV-DERENL 264
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+++ IE E+ + ++V L GG LVI+Q EAL +IDVN G F ++ E +L N
Sbjct: 265 FEEYGIEMELEKAVKRKVWLKCGGYLVIDQAEALTAIDVNTGK--FVGSTNLEDTVLRTN 322
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA +IAR+LRLR+IGGII+VDFIDM +D +++ V E ++K +++D++ + +++ G
Sbjct: 323 LDAALEIARQLRLRNIGGIIIVDFIDMLEDEHRQKVLEVLEKEIKKDKTKTNLLGITQLG 382
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
L+E+TRK+VRPS++ M+ +PC C+G G+V + ET + EI +L
Sbjct: 383 LVEMTRKKVRPSLSEMLQKPCPYCEGRGKVLSEETVGIYFKNEIYQL 429
>gi|297199646|ref|ZP_06917043.1| predicted protein [Streptomyces sviceus ATCC 29083]
gi|297147454|gb|EDY57460.2| predicted protein [Streptomyces sviceus ATCC 29083]
Length = 1115
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 132/337 (39%), Positives = 202/337 (59%), Gaps = 11/337 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 403 LKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 462
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L W++I + AKS G P
Sbjct: 463 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEDIQKKAKS----------GNAPT 512
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL DR++ + + +F
Sbjct: 513 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEGWETIHGYVSHVAPDLADRLQRWTSEVDVF 572
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 573 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 631
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 632 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 691
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+++TRKRV + SE C C G G + +ET S
Sbjct: 692 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHMETPTS 728
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 306 FLARREAVERVMVVRQSGERTQ-IGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 364
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 365 MEAAFIDIGKGRNAVL 380
>gi|392545828|ref|ZP_10292965.1| RNase E [Pseudoalteromonas rubra ATCC 29570]
Length = 1089
Score = 245 bits (625), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 229/422 (54%), Gaps = 36/422 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ E +GF P K + + T P G +T + ++ +++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAKTYFPSG-----YTFNGRPNIKDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQV KE G KG LT + + + +L+ + R G +SR+I G ER LK +++
Sbjct: 98 QEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERIELKEALSR 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL+ LL W+ I A S G P L+
Sbjct: 158 LNLPKGMGLIVRTAGVGKSFEELEYDLKALLVHWEAIQNAADS----------GKAPFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D R + E ++++ PD +RV+LY +PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKARVFEEAKAHIERFRPDFINRVKLYQNDVPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAVRADRARVQIGKISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRH 652
++R+R+RPS+ C C G G + + E+ I I RL+ ++ ++T
Sbjct: 386 MSRQRLRPSLGEASQHTCPRCDGQGTIRSNES----IALSILRLIEEEAIKENTAQVNAQ 441
Query: 653 IP 654
+P
Sbjct: 442 VP 443
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEIAKTY-FP 79
>gi|319779242|ref|YP_004130155.1| ribonuclease E [Taylorella equigenitalis MCE9]
gi|397661482|ref|YP_006502182.1| ribonuclease E [Taylorella equigenitalis ATCC 35865]
gi|317109266|gb|ADU92012.1| Ribonuclease E [Taylorella equigenitalis MCE9]
gi|394349661|gb|AFN35575.1| ribonuclease E [Taylorella equigenitalis ATCC 35865]
Length = 963
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 150/434 (34%), Positives = 241/434 (55%), Gaps = 37/434 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F D+ + H GF P K EV S H GT S+ +
Sbjct: 37 NIYKGVITRIEPSLEACFVDYGQERH-------GFLPFK-EV---SRNYHKSGTDHSRIS 85
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
L+V G ++I+QV KE G KG LT Y L R+ +L+ + + G +SR+I
Sbjct: 86 EA----LEV--GQELIIQVEKEERGNKGAALTTYISLAGRYLVLMPNNPKGGGISRRIDW 139
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L+ PEG L RT G + EEL DL L+ WK I + A +
Sbjct: 140 EERQELREAMSHLELPEGMSLIARTAGIGRTTEELNWDLTYLMQLWKAIEDAANHYS--- 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
PIL+++ + ++DYF+ + ++++D+ Y +V +++QD+ PD ++
Sbjct: 197 -------APILIYQESSLVIRALRDYFSHDITEILIDTDEIYDQVNAFMQDVMPDNVAKI 249
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F +E +I S+ V LP+GGS+VI+ TEALV++DVN G
Sbjct: 250 KRYRHAVPLFSRFQVEHQIETAYSRHVHLPSGGSIVIDHTEALVAVDVNSARST--RGGD 307
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + N+ AA+++AR+LRLRD+GG+IV+DFIDM D N++ V ++K+A++ DR+ V
Sbjct: 308 IEETAMRTNIEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQKAVESKLKEAIQFDRARV 367
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSK 640
++ ++S+ GLME++R+R+RPS+ C C GTG + +E+S + RLL +
Sbjct: 368 QMGKISKFGLMELSRQRLRPSLNEGSHIICPRCNGTGAIRDIESSALN----VLRLLQEE 423
Query: 641 SYNQSTFYFIRHIP 654
+ ++T +P
Sbjct: 424 ALKENTAVVNAQVP 437
>gi|91203270|emb|CAJ72909.1| strongly similar to ribonuclease E (RNase E) [Candidatus Kuenenia
stuttgartiensis]
Length = 509
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 207/336 (61%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKV 349
+Q+G +++VQV KE LGTKGP+LT Y L R+ +L+ R GVS+KIT E R RLK
Sbjct: 107 LQQGKEILVQVTKESLGTKGPSLTTYISLPGRYLVLMPEVKRYGVSKKITEEEERQRLKK 166
Query: 350 IAKTLQP-EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I ++L P + G +RT + ELQKD LL WKNI + +K E
Sbjct: 167 ILESLNPPKNIGFIVRTAGVQQTKRELQKDFHYLLKLWKNICKKSK----------EIDA 216
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P ++++ + +++D F++ + +++VDS + +L+ I P +++ Y+K P
Sbjct: 217 PGVIYQESDLVIRVIRDIFSQDINEIIVDSESVFKRTREFLRIIMPKYEKQLKFYNKEKP 276
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE I + S+++PL +GGS+V+EQTEALV+IDVN G + E+
Sbjct: 277 LFHNFGIENAIEEINSRKIPLLHGGSIVLEQTEALVAIDVNSGK--YKGKCDPEETAFRT 334
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AAK+IAR++RLRD+GG+IV+DFIDM ++ + + V + + +++R R+ K+ ++S+
Sbjct: 335 NMIAAKEIARQIRLRDLGGVIVIDFIDMRNEKHIQAVEKAIADSLKRHRARTKMLKMSKF 394
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
G +EITR+R+RPS+ ++ E C C GTG + +E+
Sbjct: 395 GTIEITRQRIRPSLRDVLFEECKFCCGTGYAKTVES 430
>gi|77360756|ref|YP_340331.1| RNase E [Pseudoalteromonas haloplanktis TAC125]
gi|76875667|emb|CAI86888.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
deoxyribonucleotides via the formation of NDPs
[Pseudoalteromonas haloplanktis TAC125]
Length = 1071
Score = 245 bits (625), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 207/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I +AAD
Sbjct: 154 SLSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAI-------GVAADSA---KA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAVRPDRARVQIGKISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ PC C G G + + E+ I I RL+ ++ +T
Sbjct: 382 GLLEMSRQRLRPSLGEASQGPCPRCSGQGTIRSNES----IALSILRLIEEEAIKDNTAQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 VNAQVP 443
>gi|358450696|ref|ZP_09161149.1| ribonuclease [Marinobacter manganoxydans MnI7-9]
gi|357225072|gb|EHJ03584.1| ribonuclease [Marinobacter manganoxydans MnI7-9]
Length = 1073
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 206/336 (61%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK
Sbjct: 95 VSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDERAQLKE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 155 AMNDVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQFWEAITQAAG----------ERKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ Y +V ++++ + P ++++LY IP
Sbjct: 205 PFLIHQESNVIIRAVRDYLRQDIGEVLIDANGVYEDVLNFVRAVMPTFENKIKLYKDEIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 265 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGQDIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IV+DFIDM ++R V +++++A+E DR+ V+V ++SR
Sbjct: 323 NLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKIREALEIDRARVQVGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GL+E++R+R+RPS+ SE C C+G G + +E+
Sbjct: 383 GLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIES 418
>gi|281425614|ref|ZP_06256527.1| ribonuclease, Rne/Rng family [Prevotella oris F0302]
gi|281400201|gb|EFB31032.1| ribonuclease, Rne/Rng family [Prevotella oris F0302]
Length = 524
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 152/459 (33%), Positives = 250/459 (54%), Gaps = 29/459 (6%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP----Q 274
V +++ +N +D G F +L+ L + N + +V D +P Q
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYLKQVNSDRKRLYPFSKAQ 101
Query: 275 GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 102 RLPDLKKDGSVQQVLSV--GQEVLVQIVKEPISTKGPRLTGELSFAGRFIVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +++ L W++ +
Sbjct: 160 VSSKIKSGEERARLKQLIYSIKPKNCGVIVRTVAEGKRVAELDTEMKVLTKRWEDAILKT 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ + P L+ G+ +++++D FN + + V++ Y+EV YL IA
Sbjct: 220 QK---------QQKRPQLVFEETGRAIAMLRDLFNPSFENIYVNNEEVYNEVKHYLTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+ Y ++P+FD FN+ ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PEKASIVKHYTGKVPIFDNFNVTKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 SKSENGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEI 633
++DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG++ + ++E++I
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDVNVEETCPTCNGTGKIRSSILFTDQLERKI 449
Query: 634 SRLL----VSKSYNQSTFYFIRHIPK----RRKHLKLEY 664
RL+ ++K Y Y +I K R+ +L+Y
Sbjct: 450 DRLVNKIGIAKFYLHVHPYVAAYINKGFISLRRKWQLKY 488
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE EP +++ ++Y V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKNLVEYQNEPRQASFSVGNIYAAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|407696564|ref|YP_006821352.1| ribonuclease, Rne/Rng family protein [Alcanivorax dieselolei B5]
gi|407253902|gb|AFT71009.1| Ribonuclease, Rne/Rng family protein [Alcanivorax dieselolei B5]
Length = 1126
Score = 244 bits (624), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 144/386 (37%), Positives = 217/386 (56%), Gaps = 29/386 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQV-QKGT 295
EA F DF E +GF P K S TKD K G V ++G
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-------EISRQYFTKDPKDIQGRINIKDVIKEGQ 96
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK +L
Sbjct: 97 EVIIQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERQQLKEALASL 156
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ +RT G EELQ DL+ LL W +I E ++S P L++
Sbjct: 157 KLPDEMGVIVRTAGLGRGAEELQWDLDYLLKLWDSISEASQSRK----------APFLIY 206
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++DS + + E +++Q + D +++LY++ IPLF +F
Sbjct: 207 QESNVIIRAIRDYLRKDIGEVLIDSEKVFEEAQAFVQQVMADYKHKIKLYNEEIPLFSRF 266
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L NL AA
Sbjct: 267 QIESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALQTNLEAA 324
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
+IAR+LRLRDIGG+IVVDFIDM N+R V ++ A+E DR+ +++ +SR GL+E+
Sbjct: 325 DEIARQLRLRDIGGLIVVDFIDMGPARNQREVENRMRDALEADRARIQLGRISRFGLLEL 384
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRV 619
+R+R+RPS+ S C C G G +
Sbjct: 385 SRQRLRPSLGETSSIVCPRCNGQGHI 410
>gi|393762071|ref|ZP_10350700.1| ribonuclease [Alishewanella agri BL06]
gi|392607103|gb|EIW89985.1| ribonuclease [Alishewanella agri BL06]
Length = 1032
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 195/337 (57%), Gaps = 14/337 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERQELKD 150
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ + P+G GL +RT G S EEL DL+ LL W I E A+ + A
Sbjct: 151 SLGQLEMPDGMGLIVRTAGVGKSYEELDYDLKALLKHWSAITEEAQ----------KRAA 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY V ++++DS + + E Y+Q PD RV++Y +P
Sbjct: 201 PFLIHQESNVVFRAIRDYLRRDVGEILIDSQKIFEEAKVYIQQFRPDFAHRVKMYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + V LP+GGS+VI+ TEAL +ID+N G E+ +
Sbjct: 261 LFMHYQIENQIETAFRREVRLPSGGSIVIDSTEALTAIDINSSKAT--KGGDIEETAFNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV++DR+ V++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLKDAVKQDRARVQIGRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GL+E++R+R+RPS+ C C G G + ++E+S
Sbjct: 379 GLLEMSRQRLRPSLGESAGHVCPRCHGRGTIRSVESS 415
>gi|339482763|ref|YP_004694549.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. Is79A3]
gi|338804908|gb|AEJ01150.1| ribonuclease, Rne/Rng family [Nitrosomonas sp. Is79A3]
Length = 847
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 152/421 (36%), Positives = 234/421 (55%), Gaps = 40/421 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K N+ ++I EP EA F D+ E +GF P K P S
Sbjct: 26 DLDIESISKEQRKSNIYKAVITRIEPSLEAAFVDY-------GCERHGFLPFKEIAP--S 76
Query: 269 HTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWIL 326
+ G+ + + +Q +Q+G ++IVQV K+ G KG LT Y L R+ +L
Sbjct: 77 CFNESAGSSNGR--------IQDLLQEGQELIVQVDKDERGNKGAALTTYISLAGRYLVL 128
Query: 327 I-TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLS 384
I + + GVSR+ITG ER L+ VIAK P + RT G S EELQ DL L
Sbjct: 129 IPNNPNSGGVSRRITGEERNDLRDVIAKLEVPPSMSIIARTAGIGRSTEELQWDLNYLTQ 188
Query: 385 TWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHE 444
W I E A + GV L+++ + ++DYF++++ ++++DS Y +
Sbjct: 189 LWYAIEEAANN-----QNGV-----FLIYQESSLVIRAIRDYFSQEIGEILIDSRDIYEQ 238
Query: 445 VTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALV 504
+ ++ + P DR++ Y +PLF +F IE +I S++V LP+GG++VI+ TEALV
Sbjct: 239 ASQFMVHVMPANVDRLKFYHDDVPLFSRFQIEHQIETAYSRKVSLPSGGAIVIDHTEALV 298
Query: 505 SIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRL 564
S+DVN + G E L+ NL AA +IAR+LRLRD+GG+IV+DFIDM N+R
Sbjct: 299 SVDVNSARAI--RGLDIEHTALNTNLEAADEIARQLRLRDLGGLIVIDFIDMDVQRNQRE 356
Query: 565 VYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
V + +A+ +DR+ ++V ++SR GL+E++R+R+RPS+ PC C GTG + ++
Sbjct: 357 VEARLHEALRQDRARIQVGKISRFGLLELSRQRLRPSLGESNYIPCARCNGTGFIRGTDS 416
Query: 625 S 625
S
Sbjct: 417 S 417
Score = 38.9 bits (89), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A++ + LV+L +E + + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQPEELRVAIVNGQTLVDLDIESISKEQRKSNIYKAVITRIEPSLEAAFVDYGCE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|374622268|ref|ZP_09694794.1| ribonuclease E [Ectothiorhodospira sp. PHS-1]
gi|373941395|gb|EHQ51940.1| ribonuclease E [Ectothiorhodospira sp. PHS-1]
Length = 948
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 149/434 (34%), Positives = 247/434 (56%), Gaps = 36/434 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
NV ++ EP EA F ++ E +GF P K E+ S+ + P + S T
Sbjct: 25 NVYKGVVTRVEPSLEAAFVNY-------GAERHGFLPFK-EI-SRSYLNQPDNPEASPKT 75
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 76 -------SLKEGMELIVQVEKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGVSRRIEG 128
Query: 342 VERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER+ ++ +A+ P+G GL RT G S+EELQ DLE L + W +I E A
Sbjct: 129 EERSEIRESLAQLDVPQGMGLIARTAGVGRSVEELQWDLEYLKTLWISIAEAA------- 181
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
E +G P L+++ + ++D+ + ++++D + + + ++Q + P+ ++
Sbjct: 182 -EIRKG--PFLIYQESNVIIRTLRDHMRNDIAEVIIDDAKVFDQARDFVQQVMPNNLRKL 238
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY+ +PLF+++ IE +I + V LP+GG++VI+ TEAL+SIDVN GS
Sbjct: 239 KLYEDHVPLFNRYQIESQIEAAFQREVTLPSGGAIVIDHTEALISIDVNSARAT--KGSD 296
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA++IAR+LRLRD+GG+IV+DFIDMA + N+R V ++ A+E DR+ V
Sbjct: 297 IEETALNTNLEAAEEIARQLRLRDLGGLIVIDFIDMAPNKNQREVENRLRSALEVDRARV 356
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSK 640
+V +SR GL+E++R+R+RPS+ C C G G + ++E+ + + RL+ +
Sbjct: 357 QVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCNGHGHIRSVES----LSLSVLRLVEEE 412
Query: 641 SYNQSTFYFIRHIP 654
+ + T + H+P
Sbjct: 413 AMKEKTGCVLAHLP 426
>gi|332288915|ref|YP_004419767.1| ribonuclease E [Gallibacterium anatis UMN179]
gi|330431811|gb|AEC16870.1| ribonuclease E [Gallibacterium anatis UMN179]
Length = 996
Score = 244 bits (624), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 200/331 (60%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+Q+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 LQEGQEVIVQVSKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L+ P+G GL +RT G S EELQ DL LL W+ I + ++S
Sbjct: 154 ALSSLEVPDGVGLIVRTAGVGRSPEELQWDLHVLLHHWEAIKQASESRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + + +V +++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSRKVFDKVKEHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHFQIESQIESAFQREVQLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPARHQREVENRMREAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG+V
Sbjct: 382 GLLEMSRQRLSPSLNESTHHICPRCQGTGKV 412
>gi|71282108|ref|YP_269009.1| ribonuclease E [Colwellia psychrerythraea 34H]
gi|71147848|gb|AAZ28321.1| ribonuclease E [Colwellia psychrerythraea 34H]
Length = 1004
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 148/434 (34%), Positives = 237/434 (54%), Gaps = 34/434 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ + I EP EA F D+ D H GF P K + + P+G +
Sbjct: 40 NIYKAKITRIEPSLEAAFVDY-GADRH------GFLPMK----EIAREYFPKGYT-FQGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K L +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKEVLH--EGQEVIVQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKV-IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK ++K P+G GL +RT G EEL+ DL LL W+ I +
Sbjct: 146 DERTELKASLSKLDLPKGMGLIVRTAGVGKDYEELKWDLSVLLHHWQAI----------S 195
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
D G P L+H+ L ++DY + ++++D P+T+ V +++ + PD +++
Sbjct: 196 DAGKSRPAPFLIHQETNLILRAIRDYLRRDIGEVLIDRPKTFESVKKHIEVVRPDFLNKI 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + V LP+GGS+VI+ TEA+ SID+N GS
Sbjct: 256 KLYTSDVPLFTHYQIETQIETAFQREVRLPSGGSIVIDPTEAMTSIDINSARAT--KGSD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA++IAR+LRLRD+GG++V+DFIDM ++R V ++ +V +DR+ +
Sbjct: 314 IEETAFNTNLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDSVHQDRARI 373
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSK 640
++ ++SR GL+E++R+R+RPS+ C C GTG V +E+ + I RL+ +
Sbjct: 374 QLGKISRFGLLEMSRQRLRPSIGETSQGVCPRCSGTGHVRGVES----LALSILRLMEEE 429
Query: 641 SYNQSTFYFIRHIP 654
+ ++T + +P
Sbjct: 430 AIKENTLHVQAQVP 443
>gi|315634771|ref|ZP_07890053.1| ribonuclease E [Aggregatibacter segnis ATCC 33393]
gi|315476323|gb|EFU67073.1| ribonuclease E [Aggregatibacter segnis ATCC 33393]
Length = 949
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 199/331 (60%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASESRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 379 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 409
>gi|88705137|ref|ZP_01102849.1| ribonuclease E [Congregibacter litoralis KT71]
gi|88700832|gb|EAQ97939.1| ribonuclease E [Congregibacter litoralis KT71]
Length = 1003
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 196/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++GT++IVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R L+
Sbjct: 95 VKEGTRLIVQVDKEERGNKGAALTTFISLPGRYMVLMPNNPRAGGISRRIEGDDRAELRE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G G+ IRT G S EELQ DL LL W+ + + G E
Sbjct: 155 ALSALDIPDGMGVIIRTAGVGRSAEELQWDLNYLLQLWEAVSKA----------GEENRS 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+LL++ + V+DY + V ++++DSP + + ++ + P R++LY+ IP
Sbjct: 205 PVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQAMDFVSMVMPKYQQRIKLYEDNIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF++F IE +I + V LP+GGS+VI+ TEALVSID+N G++ E L
Sbjct: 265 LFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGANIEATALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM N+R V ++ A+ DR+ V+V +SR
Sbjct: 323 NLEAADEVARQLRLRDMGGLIVIDFIDMLAAKNQRAVENRMRDALAIDRARVQVGRISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+RPS+ + C C G G +
Sbjct: 383 GLLEMSRQRLRPSLGETSAIICPRCTGQGSI 413
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y+G +T++ P++ AFV+ G
Sbjct: 4 MLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKH------YREP 150
R + +K YR P
Sbjct: 64 RHGFLSVKEIAREYFYRNP 82
>gi|251793108|ref|YP_003007834.1| ribonuclease E [Aggregatibacter aphrophilus NJ8700]
gi|422336643|ref|ZP_16417616.1| hypothetical protein HMPREF9335_00804 [Aggregatibacter aphrophilus
F0387]
gi|247534501|gb|ACS97747.1| ribonuclease E (RNase E) [Aggregatibacter aphrophilus NJ8700]
gi|353346088|gb|EHB90374.1| hypothetical protein HMPREF9335_00804 [Aggregatibacter aphrophilus
F0387]
Length = 959
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 199/331 (60%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 412
>gi|325110583|ref|YP_004271651.1| RNAse E [Planctomyces brasiliensis DSM 5305]
gi|324970851|gb|ADY61629.1| RNAse E [Planctomyces brasiliensis DSM 5305]
Length = 534
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 210/347 (60%), Gaps = 14/347 (4%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVI 350
++G +V+VQV+K+G+GTKGPTL+ Y + R+ +L+ + R+G+SRKI V+ R L+ +
Sbjct: 126 KRGDEVLVQVIKDGIGTKGPTLSTYISIPGRYLVLMPALQRVGISRKIENVDDRKHLREV 185
Query: 351 AKTLQPE-GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
K L P G G +RT S ++L++D+ LL WK I+ + P
Sbjct: 186 IKQLSPPPGLGFIVRTAGVDRSEKDLRRDMNYLLRLWKVIVRRID----------KHPAP 235
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
+ +++ ++D + + +++D Y +++ + P DRV+ YD P+
Sbjct: 236 VDVYQESDMITRTIRDIYAADIDTVLIDDEDQYKHAREFMKVVLPKHVDRVKYYDGAEPI 295
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F K+N+E+EI + ++ V L GGS+VI+QTEALV+IDVN G + E+ VN
Sbjct: 296 FHKYNVEQEITKIQNRTVQLEGGGSIVIDQTEALVAIDVNSGTHRVDDDA--EETSFQVN 353
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
+ AAK+I+R++RLRD+GG+IV DFIDM + ++R V ++ AV+RDR+ KV +S G
Sbjct: 354 MRAAKEISRQIRLRDLGGVIVNDFIDMRQEKHRRAVERQLHDAVQRDRARTKVLRISPFG 413
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
L+E+TR+R+RPS+ I E C CC G+G V+ +E+ ++ +E+ R+
Sbjct: 414 LIEMTRQRIRPSLKRSIYEECPCCNGSGSVKKVESVAIEVMRELMRV 460
>gi|325300025|ref|YP_004259942.1| ribonuclease, Rne/Rng family [Bacteroides salanitronis DSM 18170]
gi|324319578|gb|ADY37469.1| ribonuclease, Rne/Rng family [Bacteroides salanitronis DSM 18170]
Length = 524
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 216/355 (60%), Gaps = 15/355 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAT---------KMP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ Y+EV +Y+ IAP+ V+LY ++P+
Sbjct: 227 TLVYEETSRTVAMLRDLFNPSYENIYVNDETVYNEVKNYVALIAPERVGIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K V +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 287 FDNFAITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
LM+ITR+RVRP++ E C C G G+++ +T SKI+ +++L V K
Sbjct: 406 LMQITRQRVRPAMDVTTDENCPTCFGKGKIKPSILFTDTLESKIDYLVNKLKVKK 460
Score = 38.9 bits (89), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E + ++Y+G V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKNLVEFQKEERNLSFSVGNMYVGKVRKLMPGLNACFVDVGFEKDAFL---HY 70
>gi|406037472|ref|ZP_11044836.1| ribonuclease E [Acinetobacter parvus DSM 16617 = CIP 108168]
Length = 1116
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 134/336 (39%), Positives = 205/336 (61%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 ILSSLNLPRGMSVIVRTAGIGRSQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y + P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTQNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDMA D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMAKDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|91775674|ref|YP_545430.1| ribonuclease E [Methylobacillus flagellatus KT]
gi|91709661|gb|ABE49589.1| RNAse E [Methylobacillus flagellatus KT]
Length = 904
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 201/337 (59%), Gaps = 14/337 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV K+ G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 94 LKEGQELIVQVDKDERGNKGAALTTFVSLAGRYLVLMPNNPRGGGVSRRIEGEERNELRD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P G + RT G S+EELQ DL LL W + +A G
Sbjct: 154 TMAQLQVPSGMSIIARTAGIGRSVEELQWDLNYLLQLWTAV-----ESASTIQSG----- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DYF + ++++D+P Y + ++ + P+ RV+LY IP
Sbjct: 204 PFLIYQEGSLVIRAIRDYFQPDIGEILIDTPDIYEQAVQFMNHVMPNNVSRVKLYRDEIP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I + ++ V LP+GG++VI+ TEALVS+DVN G GS E+ +
Sbjct: 264 LFSRFQIEHQIESAFAREVRLPSGGAIVIDHTEALVSVDVNSGRST--KGSDIEQTAFNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG++V+DFIDM + N+R V +++A+ DR+ V+ ++SR
Sbjct: 322 NLEAADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRLREALHHDRARVQTGKISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GL+E++R+R+RPS+ PC C GTG + +E++
Sbjct: 382 GLLELSRQRLRPSLGESNHIPCPRCHGTGHIRGIEST 418
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P++ AFVN G
Sbjct: 4 MLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGVITRIEPSLEAAFVNYGTD 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|336315776|ref|ZP_08570683.1| ribonuclease, Rne/Rng family [Rheinheimera sp. A13L]
gi|335879923|gb|EGM77815.1| ribonuclease, Rne/Rng family [Rheinheimera sp. A13L]
Length = 1076
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 150/406 (36%), Positives = 220/406 (54%), Gaps = 32/406 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQG-TKDSKH 281
N+ I EP EA F D+ E +GF P K + S P G T D +
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPAGYTFDGR- 87
Query: 282 TPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT 340
P K V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I
Sbjct: 88 -PNIKEV--VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE 144
Query: 341 GVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALA 399
G ER LK LQ P+G GL +RT G S EEL DL+ LL W I A++
Sbjct: 145 GDERQDLKDSLDQLQLPDGMGLIVRTAGVGKSHEELDYDLKALLKHWSAITHEAQNRP-- 202
Query: 400 ADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
P L+H+ ++DY V ++++D+PR + E Y+Q PD R
Sbjct: 203 --------APFLIHQESNVVFRAIRDYLRRDVGEILIDNPRIFEEAKVYIQQFRPDFAHR 254
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
V++Y +PLF F IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 255 VKMYQGEVPLFMHFQIETQIESAFRREVRLPSGGSIVIDSTEALTAIDINSSKAT--KGG 312
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E+ + NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV++DR+
Sbjct: 313 DIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLKDAVKQDRAR 372
Query: 580 VKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
V++ +SR GL+E++R+R+RPS+ + C C G G + + E+S
Sbjct: 373 VQIGRISRFGLLEMSRQRLRPSLGESATHVCPRCHGRGTIRSTESS 418
>gi|375256397|ref|YP_005015564.1| putative ribonuclease G [Tannerella forsythia ATCC 43037]
gi|363406384|gb|AEW20070.1| putative ribonuclease G [Tannerella forsythia ATCC 43037]
Length = 524
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 202/329 (61%), Gaps = 12/329 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +++VQ+ KE + TKGP LTA RF +LI D+I VS KI + ER RL+ + +
Sbjct: 119 GDEILVQIAKEPISTKGPRLTAELSFAGRFLVLIPFSDKISVSTKIKSNEERARLRQLMQ 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ F + +RT A G + EL +L+ LL W++ + + P L+
Sbjct: 179 SVKPKNFSVIVRTSAEGKRVAELDGELKNLLKRWEDHIPKVP----------QSKAPTLI 228
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ +T+++++D FN + + V++ + Y V Y+ IAP+ + V+LY +P+FDK
Sbjct: 229 YEETARTVALLRDIFNASFEHIYVNNKQVYENVYDYVSLIAPEQKNIVKLYTDDMPIFDK 288
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F + +I ++ + V +G L+IE TEA+ IDVN G+ M G + +EK DVN+AA
Sbjct: 289 FGVTRQIKSLFGRTVTYKSGAYLIIEHTEAMHVIDVNSGNRMKG-STEQEKTAFDVNIAA 347
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GGIIV+DFID+A+ SN++ +YE + KA+ DR+ + LS+ LM+
Sbjct: 348 ANEIARQLRLRDMGGIIVIDFIDLAEASNRQQLYEHMTKAMANDRAKHNILPLSKFCLMQ 407
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA 621
ITR+RVRP + +E C C GTG +++
Sbjct: 408 ITRQRVRPILDVKTTEKCPSCFGTGTIKS 436
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IAVLED+ LVEL EP + ++YL + KL+P + AFV++G + + + HY++
Sbjct: 16 IAVLEDKSLVELQKEPRSDSFAVGNIYLARIKKLLPGLNAAFVDVGCKKDAFL---HYQD 72
Query: 150 PFIFPPFRCRTK 161
+ P F + K
Sbjct: 73 --LGPNFNTQQK 82
>gi|84498597|ref|ZP_00997360.1| hypothetical protein JNB_20433 [Janibacter sp. HTCC2649]
gi|84381130|gb|EAP97015.1| hypothetical protein JNB_20433 [Janibacter sp. HTCC2649]
Length = 1003
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 198/324 (61%), Gaps = 3/324 (0%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I K
Sbjct: 476 GDTVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPEGSMTGISRKLPDTERARLKAILKE 535
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ PE G+ +RT A G S EEL+ D+E L W+ I + K AA ++ + G P+LLH
Sbjct: 536 VVPEHAGVIVRTAAEGASEEELRADVERLTKAWEKIQQ--KVAAASSKKAGSGGAPVLLH 593
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
T+ +++D F E +++V + + EV+ Y++D+APDL R+ + LF
Sbjct: 594 GEADLTVRVIRDVFTEDFSELIVSGDQAWAEVSGYVEDVAPDLAKRLTHWTSEEDLFSHH 653
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
++E+I+ + ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + N+ AA
Sbjct: 654 RVDEQISKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKNNIEAA 712
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 713 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVVRRLLECLGRDRTKHQVAEVTSLGLVQM 772
Query: 594 TRKRVRPSVTFMISEPCTCCQGTG 617
TRKRV + + SE C C G G
Sbjct: 773 TRKRVGSGLIEVFSEQCEHCAGRG 796
>gi|386866506|ref|YP_006279500.1| ribonuclease G [Bifidobacterium animalis subsp. animalis ATCC
25527]
gi|385700589|gb|AFI62537.1| ribonuclease G [Bifidobacterium animalis subsp. animalis ATCC
25527]
Length = 1038
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 199/333 (59%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER RLK
Sbjct: 570 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERNRLK 629
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLEGL + W I +E + G
Sbjct: 630 SIVSKIAPKDMGVIIRTAAEGASEEAIAKDLEGLTNQWAEIQRKR-------EEFLHGKR 682
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-- 466
P LL + +V+D FN+ KM+V+ YH + YL +APDLC+++E +D
Sbjct: 683 PKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLDHMAPDLCNKLERWDPEEH 742
Query: 467 --IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 743 GGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 801
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 802 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 861
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 862 VTSLGLVQMTRKRIGQGLVEAFSEECPECKGRG 894
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 496 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 549
>gi|375111673|ref|ZP_09757877.1| ribonuclease [Alishewanella jeotgali KCTC 22429]
gi|374568309|gb|EHR39488.1| ribonuclease [Alishewanella jeotgali KCTC 22429]
Length = 1048
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 195/337 (57%), Gaps = 14/337 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERQELKD 150
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ + P+G GL +RT G S EEL DL+ LL W I E A+ + A
Sbjct: 151 SLGQLEMPDGMGLIVRTAGVGKSYEELDYDLKALLKHWSAITEEAQ----------KRAA 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY V ++++DS + + E Y+Q PD RV++Y +P
Sbjct: 201 PFLIHQESNVVFRAIRDYLRRDVGEILIDSQKIFEEAKVYIQQFRPDFAHRVKMYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + V LP+GGS+VI+ TEAL +ID+N G E+ +
Sbjct: 261 LFMHYQIENQIETAFRREVRLPSGGSIVIDSTEALTAIDINSSKAT--KGGDIEETAFNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV++DR+ V++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLKDAVKQDRARVQIGRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GL+E++R+R+RPS+ C C G G + ++E+S
Sbjct: 379 GLLEMSRQRLRPSLGESAGHVCPRCHGRGTIRSVESS 415
>gi|113460860|ref|YP_718927.1| ribonuclease E [Haemophilus somnus 129PT]
gi|112822903|gb|ABI24992.1| RNAse E [Haemophilus somnus 129PT]
Length = 942
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 200/331 (60%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDATEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 412
>gi|359436648|ref|ZP_09226742.1| ribonuclease E [Pseudoalteromonas sp. BSi20311]
gi|358028693|dbj|GAA62991.1| ribonuclease E [Pseudoalteromonas sp. BSi20311]
Length = 885
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 227/422 (53%), Gaps = 36/422 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ D H GF P K + + T PQG +T + ++ +++G
Sbjct: 54 EAAFVDYG-ADRH------GFLPLK----EIARTYFPQG-----YTFHGRPNIRDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 98 QEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSR 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIQQAADSAK----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D PR + E ++++ PD RV+LY PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRH 652
++R+R+RPS+ C C G G + + E+ I I RL+ ++ +T
Sbjct: 386 MSRQRLRPSLGEASQGVCPRCSGQGTIRSNES----IALSILRLIEEEAIKDNTAQVNAQ 441
Query: 653 IP 654
+P
Sbjct: 442 VP 443
>gi|110833921|ref|YP_692780.1| phosphoric diester hydrolase [Alcanivorax borkumensis SK2]
gi|110647032|emb|CAL16508.1| phosphoric diester hydrolase [Alcanivorax borkumensis SK2]
Length = 1074
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/386 (37%), Positives = 211/386 (54%), Gaps = 29/386 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQV-QKGT 295
EA F DF E +GF P K S KD K G +V ++G
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-------EISRQYFQKDPKDIQGRINIKEVIKEGQ 99
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK L
Sbjct: 100 EVIVQVAKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEALGAL 159
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+ G+ +RT G S EELQ DL LL W +I D + P L++
Sbjct: 160 NIPDEMGVIVRTAGLGRSAEELQWDLNYLLKLWTSI----------DDASQDRKAPFLIY 209
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++DS + Y E ++Q + D +++LYD PLF +F
Sbjct: 210 QESNVIIRAIRDYLRKDIGEVLIDSKKVYDEAQGFVQQVMQDFQHKIKLYDDETPLFSRF 269
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L NL AA
Sbjct: 270 QIESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALQTNLEAA 327
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IVVDFIDM N+R V ++ A+E DR+ +++ +SR GL+E+
Sbjct: 328 EEIARQLRLRDIGGLIVVDFIDMGPARNQRDVENRMRDALEADRARIQLGRISRFGLLEL 387
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRV 619
+R+R+RPS+ S C C G G +
Sbjct: 388 SRQRLRPSLGETSSIVCPRCDGQGHI 413
>gi|385331963|ref|YP_005885914.1| ribonuclease, Rne/Rng family [Marinobacter adhaerens HP15]
gi|311695113|gb|ADP97986.1| ribonuclease, Rne/Rng family [Marinobacter adhaerens HP15]
Length = 1074
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 206/336 (61%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK
Sbjct: 92 VSEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDERAQLKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+Q P+ G+ +RT G + EELQ DL+ L+ W+ I + A E
Sbjct: 152 AMNDVQVPKSMGIIVRTAGIGRTTEELQWDLDYLVQFWEAITQAAG----------ERKA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + V+DY + + ++++D+ Y +V ++++ + P ++++LY IP
Sbjct: 202 PFLIHQESNVIIRAVRDYLRQDIGEVLIDANGVYEDVLNFVRAVMPTFENKIKLYKDEIP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 262 LFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGQDIEETALQT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG+IV+DFIDM ++R V +++++A+E DR+ V+V ++SR
Sbjct: 320 NLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVEQKMREALEIDRARVQVGKISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GL+E++R+R+RPS+ SE C C+G G + +E+
Sbjct: 380 GLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIES 415
>gi|229846500|ref|ZP_04466608.1| hydroxyethylthiazole kinase [Haemophilus influenzae 7P49H1]
gi|229810593|gb|EEP46311.1| hydroxyethylthiazole kinase [Haemophilus influenzae 7P49H1]
Length = 935
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 220/403 (54%), Gaps = 38/403 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------LTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG+V
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|348029142|ref|YP_004871828.1| ribonuclease [Glaciecola nitratireducens FR1064]
gi|347946485|gb|AEP29835.1| ribonuclease [Glaciecola nitratireducens FR1064]
Length = 981
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 149/404 (36%), Positives = 223/404 (55%), Gaps = 30/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ D H GF P K + + T P G K +
Sbjct: 40 NIYKGTITRVEPSLEAAFVDY-GADRH------GFLPLK----EIAKTYFPSGYK-LEGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K V++GT+VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDV--VREGTQVIVQVDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L+ P+G GL +RT G S EELQ DL L++ W NIM+ +++
Sbjct: 146 DERTDLKQSLGQLELPDGMGLIVRTAGVGKSYEELQWDLGVLVNHWSNIMKASETKP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D P + + ++++ + PD RV
Sbjct: 203 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKPAIFEKALAHIELVRPDFVSRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N G
Sbjct: 256 KLYQGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM N+R V +K AV+ DR+ +
Sbjct: 314 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVKNQREVENRMKDAVKPDRARI 373
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++ +SR GL+E++R+R+RPS+ C C G G V E+
Sbjct: 374 QLGRISRFGLLEMSRQRLRPSLGESAYHVCPRCSGHGTVRGTES 417
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQSEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAD 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEIAKTY-FP 79
>gi|170717347|ref|YP_001784456.1| ribonuclease [Haemophilus somnus 2336]
gi|168825476|gb|ACA30847.1| ribonuclease, Rne/Rng family [Haemophilus somnus 2336]
Length = 942
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 200/331 (60%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFRREVRLPSGGSIVIDATEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRMREAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 412
>gi|302343376|ref|YP_003807905.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075]
gi|301639989|gb|ADK85311.1| ribonuclease, Rne/Rng family [Desulfarculus baarsii DSM 2075]
Length = 505
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/425 (34%), Positives = 235/425 (55%), Gaps = 28/425 (6%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE-----SNGFFPSKSEVPDDSHTSHP 273
V+ VL + + +D G P+A F GD D + G +P + E +
Sbjct: 46 VARVLPGMQAAFVDIGLPKAAF--LYVGDVRPDVSFDEYLAPGAYPDEPEDVAQGGVAAE 103
Query: 274 QGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRI 333
QG + +Q+G +++VQV KE LG+KG +T + L +L+ + + I
Sbjct: 104 QGQVRIEQ--------MLQQGQELMVQVAKEPLGSKGARITTHITLPGHNLVLMPTLNHI 155
Query: 334 GVSRKITGV-ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEH 392
GVSR+I ER RL+ I + + P G+G RT + ++L+ +++ L+S W++I+
Sbjct: 156 GVSRRIADEDERNRLRQIIEQMAPGGYGFIARTASENQEPDKLRAEMDFLVSLWESILLR 215
Query: 393 AKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDI 452
A VP +LHR + +L V+D +V M++D + Y+EV ++
Sbjct: 216 RGRAM----------VPNMLHRDLSVSLRAVRDLCTREVDHMIIDCEQEYYEVVEFVSTF 265
Query: 453 APDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGH 512
P L VE Y R P+FD + +E E+ L ++V L +GG +VIE+TEAL +IDVN G
Sbjct: 266 LPRLVPCVEFYRGREPIFDAYGVEHELTRALGRKVWLKSGGYVVIEKTEALTTIDVNTGR 325
Query: 513 GMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKA 572
+ GH + E+ IL NL A K+IA ++RLRD+GG+IV+DFIDM ++N+ V E +K A
Sbjct: 326 YVGGH--NLEETILKTNLEAVKEIACQIRLRDLGGLIVIDFIDMEKEANRLRVVESLKDA 383
Query: 573 VERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQE 632
+ DRS V +S GL+E+TRKRVR S+ ++EPC C G+G+++ T ++ +E
Sbjct: 384 LRGDRSKTNVLAMSPLGLVEMTRKRVRQSLGESLTEPCAYCHGSGKIKDASTVCYELFRE 443
Query: 633 ISRLL 637
+ R L
Sbjct: 444 LEREL 448
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LIN+ R+A+LE+ VE+ E K ++YLG V +++P M AFV+
Sbjct: 1 MSATLLINAR-SYETRVALLENGHCVEVYTERHKHGSLAGNIYLGRVARVLPGMQAAFVD 59
Query: 134 IGNSRPSLMDIKHYREPFIFPPF 156
IG + + + + R F +
Sbjct: 60 IGLPKAAFLYVGDVRPDVSFDEY 82
>gi|254514410|ref|ZP_05126471.1| ribonuclease E [gamma proteobacterium NOR5-3]
gi|219676653|gb|EED33018.1| ribonuclease E [gamma proteobacterium NOR5-3]
Length = 987
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 197/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++GT++IVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R L+
Sbjct: 95 VKEGTRLIVQVDKEERGNKGAALTTFISLPGRYMVLMPNNPRAGGISRRIEGDDRAELRE 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G G+ IRT G S EELQ DL LL W+ + + G E
Sbjct: 155 ALSALDIPDGMGVIIRTAGVGRSAEELQWDLNYLLQLWEAVSKA----------GEENRS 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+LL++ + V+DY + V ++++DSP + + ++ + P R++LY+ IP
Sbjct: 205 PVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQAMDFVSMVMPKYQQRIKLYEDNIP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF++F IE +I + + V LP+GGS+VI+ TEALVSID+N G + E+ L
Sbjct: 265 LFNRFQIESQIESAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGVNIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM N+R V ++ A+ DR+ V+V +SR
Sbjct: 323 NLEAADEVARQLRLRDMGGLIVIDFIDMLAARNQRAVETRMRDALAIDRARVQVGRISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+RPS+ + C C G G +
Sbjct: 383 GLLEMSRQRLRPSLGETSAIVCPRCTGQGTI 413
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y+G +T++ P++ AFV+ G
Sbjct: 4 MLINATHPEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKH------YREP 150
R + +K YR+P
Sbjct: 64 RHGFLSVKEIAREYFYRDP 82
>gi|34497275|ref|NP_901490.1| ribonuclease E [Chromobacterium violaceum ATCC 12472]
gi|34103131|gb|AAQ59494.1| probable ribonuclease E [Chromobacterium violaceum ATCC 12472]
Length = 981
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 151/423 (35%), Positives = 233/423 (55%), Gaps = 45/423 (10%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ V K N+ +I EP EA F D+ E +GF P K +
Sbjct: 26 DLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDY-------GTERHGFLPFK-----EV 73
Query: 269 HTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWIL 326
S+ QG G + +Q +++G +V+VQV K+ G KG LT Y L R+ +L
Sbjct: 74 SRSYFQGYD------GGRPRIQDVLREGMEVVVQVEKDERGNKGAALTTYISLAGRYLVL 127
Query: 327 ITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLS 384
+ + R G VSR+I G ER LK + L+ P G L RT G +LEELQ DL L+
Sbjct: 128 MPNNPRGGGVSRRIEGEERQELKDLLSQLEVPHGMSLIARTAGIGRNLEELQWDLGYLMQ 187
Query: 385 TWKNIMEHAKSAALAADEGVEGA--VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTY 442
W+ I EG GA P L+ + + ++DYF+ + ++++D+ +
Sbjct: 188 LWRAI------------EGAAGAQSAPFLILQEGSLVIRAIRDYFHPDIGEVLIDTEEIH 235
Query: 443 HEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEA 502
+ ++ + P++ RV+LY +PLF +F IE +I S+ V LP+GG++VI+ TEA
Sbjct: 236 DQARQFMSHVMPNMLSRVKLYKDHVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEA 295
Query: 503 LVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNK 562
LVSIDVN G+ E+ + NL AA++IAR+LRLRD+GG++V+DFIDM + N+
Sbjct: 296 LVSIDVNSARAT--KGADIEETAVKTNLEAAEEIARQLRLRDLGGLVVIDFIDMENPKNQ 353
Query: 563 RLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEAL 622
R V ++ ++ DR+ V++ +LSR GL+E++R+R++PS+ EPC C G G +
Sbjct: 354 RDVENRLRDVLKHDRARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGT 413
Query: 623 ETS 625
E+S
Sbjct: 414 ESS 416
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KLV+L +E V + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLVDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|343519510|ref|ZP_08756490.1| ribonuclease E RNase E (first module) [Haemophilus pittmaniae HK
85]
gi|343392580|gb|EGV05145.1| ribonuclease E RNase E (first module) [Haemophilus pittmaniae HK
85]
Length = 848
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/347 (37%), Positives = 208/347 (59%), Gaps = 17/347 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 2 LKEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERIELKE 61
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 62 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASESRP----------A 111
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ + + S+++ + PD +RV+LY +P
Sbjct: 112 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKSHIKLVRPDFINRVKLYQGEVP 171
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 172 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 229
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 230 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 289
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
GL+E++R+R+ PS+ C CQGTG+V E+L S ++ +E
Sbjct: 290 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKVRDNESLSLSILRLIEE 336
>gi|260582323|ref|ZP_05850116.1| ribonuclease G and E [Haemophilus influenzae NT127]
gi|260094691|gb|EEW78586.1| ribonuclease G and E [Haemophilus influenzae NT127]
Length = 937
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 220/403 (54%), Gaps = 38/403 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 42 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 94
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 95 I-----------LTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISR 143
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 144 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 203
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 204 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDF 253
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 254 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 311
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV D
Sbjct: 312 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPD 371
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG+V
Sbjct: 372 RARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKV 414
>gi|114562666|ref|YP_750179.1| ribonuclease, Rne/Rng family protein [Shewanella frigidimarina
NCIMB 400]
gi|114333959|gb|ABI71341.1| RNAse E [Shewanella frigidimarina NCIMB 400]
Length = 1124
Score = 243 bits (621), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 196/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
+Q+G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 LQEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+A+ P G GL +RT G EL+ DL+ L W I E A+S A
Sbjct: 154 AMAELEVPNGMGLIVRTAGVGKESTELKWDLKVLQHHWDAIQEAAQS----------KAA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LYD +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKLHIGLVRPDFVERVKLYDSEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 382 GLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRSTES 417
>gi|397170413|ref|ZP_10493829.1| ribonuclease [Alishewanella aestuarii B11]
gi|396088080|gb|EJI85674.1| ribonuclease [Alishewanella aestuarii B11]
Length = 1044
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 195/337 (57%), Gaps = 14/337 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERQELKD 150
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ + P+G GL +RT G S EEL DL+ LL W I E A+ + A
Sbjct: 151 SLGQLEMPDGMGLIVRTAGVGKSYEELDYDLKALLKHWSAITEEAQ----------KRAA 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY V ++++DS + + E Y+Q PD RV++Y +P
Sbjct: 201 PFLIHQESNVVFRAIRDYLRRDVGEILIDSQKIFEEAKVYIQQFRPDFAHRVKMYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + V LP+GGS+VI+ TEAL +ID+N G E+ +
Sbjct: 261 LFMHYQIENQIETAFRREVRLPSGGSIVIDSTEALTAIDINSSKAT--KGGDIEETAFNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K AV++DR+ V++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLKDAVKQDRARVQIGRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GL+E++R+R+RPS+ C C G G + ++E+S
Sbjct: 379 GLLEMSRQRLRPSLGESAGHVCPRCHGRGTIRSVESS 415
>gi|315126330|ref|YP_004068333.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Pseudoalteromonas sp. SM9913]
gi|315014844|gb|ADT68182.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Pseudoalteromonas sp. SM9913]
Length = 999
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 227/422 (53%), Gaps = 36/422 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ D H GF P K + + T PQG +T + ++ +++G
Sbjct: 54 EAAFVDYG-ADRH------GFLPLK----EIARTYFPQG-----YTFHGRPNIRDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 98 QEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSR 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIQQAADSAK----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D PR + E ++++ PD RV+LY PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRH 652
++R+R+RPS+ C C G G + + E+ I I RL+ ++ +T
Sbjct: 386 MSRQRLRPSLGEASQGVCPRCSGQGTIRSNES----IALSILRLIEEEAIKDNTAQVNAQ 441
Query: 653 IP 654
+P
Sbjct: 442 VP 443
>gi|307544579|ref|YP_003897058.1| ribonuclease E [Halomonas elongata DSM 2581]
gi|307216603|emb|CBV41873.1| ribonuclease, Rne/Rng family [Halomonas elongata DSM 2581]
Length = 1179
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 30/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K EV D P G K +++G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EVSRDYFIKEPSGRPSIKEV--------LKEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G ER +LK + +
Sbjct: 98 VIVQVDKEERGNKGAALTTFISLAGRFLVLMPNNPRAGGISRRIEGEERAQLKEAMGQLT 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ GL +RT G S EELQ DL+ L+ W++I E + P L++R
Sbjct: 158 VPDKMGLIVRTAGIGRSPEELQWDLDYLVQVWESIT----------GEAGKRPAPFLIYR 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS + E ++++ + P +++ Y +PLF +F
Sbjct: 208 ESNVIIRAMRDYLRQDIGEVLIDSEEVHQEALTFIRQVMPSYQQKIKRYADEVPLFSRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 268 IESQIETAYEREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQTNLEAAD 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM+ N+R V V+ A++ DR+ V++ +SR GLME++
Sbjct: 326 EIARQLRLRDIGGLVVIDFIDMSPARNQREVENRVRDALKIDRARVQIGRISRFGLMEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+RPS+ C C G G +
Sbjct: 386 RQRLRPSLGETSGVVCPRCDGQGTI 410
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKH-YREPFIFPP 155
R + +K R+ FI P
Sbjct: 64 RHGFLPLKEVSRDYFIKEP 82
>gi|148827613|ref|YP_001292366.1| ribonuclease E [Haemophilus influenzae PittGG]
gi|148718855|gb|ABQ99982.1| ribonuclease E [Haemophilus influenzae PittGG]
Length = 935
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 220/403 (54%), Gaps = 38/403 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------LTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG+V
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|254429811|ref|ZP_05043518.1| ribonuclease, Rne/Rng family protein [Alcanivorax sp. DG881]
gi|196195980|gb|EDX90939.1| ribonuclease, Rne/Rng family protein [Alcanivorax sp. DG881]
Length = 1086
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 144/386 (37%), Positives = 213/386 (55%), Gaps = 29/386 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQV-QKGT 295
EA F DF E +GF P K S KD K G +V ++G
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-------EISRQYFQKDPKDIQGRINIKEVIKEGQ 96
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK L
Sbjct: 97 EVIVQVAKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEALGAL 156
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+ G+ +RT G S EELQ DL LL W +I E ++ + P L++
Sbjct: 157 TIPDEMGVIVRTAGLGRSAEELQWDLNYLLKLWTSIDEASQ----------DRKAPFLIY 206
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++DS + Y E ++Q + D +++LYD PLF +F
Sbjct: 207 QESNVIIRAIRDYLRKDIGEVLIDSKKVYDEAQGFVQQVMQDFQHKIKLYDDETPLFSRF 266
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L NL AA
Sbjct: 267 QIESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALQTNLEAA 324
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I+R+LRLRDIGG+IVVDFIDM N+R V ++ A+E DR+ +++ +SR GL+E+
Sbjct: 325 EEISRQLRLRDIGGLIVVDFIDMGPARNQRDVENRMRDALEADRARIQLGRISRFGLLEL 384
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRV 619
+R+R+RPS+ S C C G G +
Sbjct: 385 SRQRLRPSLGETSSIVCPRCDGQGHI 410
>gi|392555217|ref|ZP_10302354.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Pseudoalteromonas undina NCIMB 2128]
Length = 1077
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 150/422 (35%), Positives = 227/422 (53%), Gaps = 36/422 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ D H GF P K + + T PQG +T + ++ +++G
Sbjct: 54 EAAFVDYG-ADRH------GFLPLK----EIARTYFPQG-----YTFHGRPNIRDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 98 QEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSR 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIQQAADSAK----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D PR + E ++++ PD RV+LY PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRH 652
++R+R+RPS+ C C G G + + E+ I I RL+ ++ +T
Sbjct: 386 MSRQRLRPSLGEASQGVCPRCSGQGTIRSNES----IALSILRLIEEEAIKDNTAQVNAQ 441
Query: 653 IP 654
+P
Sbjct: 442 VP 443
>gi|226943599|ref|YP_002798672.1| Ribonuclease E [Azotobacter vinelandii DJ]
gi|226718526|gb|ACO77697.1| Ribonuclease E [Azotobacter vinelandii DJ]
Length = 1139
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/390 (35%), Positives = 218/390 (55%), Gaps = 30/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + P+G + K + +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-EISREYFKKSPEGRINIKDV--------LSEGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 98 VIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLD 157
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P GL +RT G S EELQ DL+ L+ W I E + ++ + P L+++
Sbjct: 158 VPADMGLIVRTAGLGRSSEELQWDLDYLVQLWTAIKEAS----------LDRSPPFLIYQ 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DS E S+++ + P +++LY+ +PLF++F
Sbjct: 208 ESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALSFIRQVMPQYASKIKLYEDSVPLFNRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 268 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V +++++A+E DR+ V++ +SR GL+E++
Sbjct: 326 EIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEDKMREALEADRARVQIGRISRFGLLEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + +E+
Sbjct: 386 RQRLRPSLGETSGIVCPRCSGQGIIRDVES 415
>gi|212691237|ref|ZP_03299365.1| hypothetical protein BACDOR_00728 [Bacteroides dorei DSM 17855]
gi|212666469|gb|EEB27041.1| S1 RNA binding domain protein [Bacteroides dorei DSM 17855]
Length = 537
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 216/355 (60%), Gaps = 15/355 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 129 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 188
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 189 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAP---------KLP 239
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ +HE+ Y+ IAP+ + V+LY ++P+
Sbjct: 240 ALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLPI 299
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 300 FDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 358
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 359 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 418
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
LM+ITR+RVRP++ +E C C G G ++ +T SKI+ +++L + +
Sbjct: 419 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKR 473
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ ++YLG V KL+P + FV++G + + + HY
Sbjct: 29 IALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDVGFEKDAFL---HY 83
>gi|423712672|ref|ZP_17686972.1| rne/Rng family ribonuclease [Bartonella washoensis Sb944nv]
gi|395411465|gb|EJF77987.1| rne/Rng family ribonuclease [Bartonella washoensis Sb944nv]
Length = 874
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 172/553 (31%), Positives = 276/553 (49%), Gaps = 50/553 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A LEE E A
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL----------ALLEEE-------------EKAA 97
Query: 194 EADSQDDLVQFEHNDDEEH--DGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLD 251
++ D++ E N +++ + S + +V ++I D D ED H +
Sbjct: 98 VGENHADVLIEETNKNKKRPRKTKNEKNSIMAADVENNVISDAITTDDAEDAFTDVSHNE 157
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
E G ++ E+P T K K +++ ++VQV+KE G KG
Sbjct: 158 IEMVGAEDAREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGA 207
Query: 312 TLTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAA 368
LT Y L R+ +L+ + R G +SRKIT V+ R RLK I K L P+G G+ +RT A
Sbjct: 208 ALTTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLKEIVKELAVPKGMGVILRTAGA 267
Query: 369 GHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFN 428
+ E+++D E L W + ++ L + P L+H ++D +N
Sbjct: 268 NRTKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLVHEESNLIKRSIRDLYN 317
Query: 429 EKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVP 488
+ + +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V
Sbjct: 318 KNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLHPQVS 377
Query: 489 LPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGI 548
L +GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+
Sbjct: 378 LKSGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRDLAGL 435
Query: 549 IVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISE 608
IV+DFIDM +D N R+V +++K ++ DR+ ++V +S GL+E++R+R+R SV I++
Sbjct: 436 IVIDFIDMLEDRNVRIVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQRIRISVLESITQ 495
Query: 609 PCTCCQGTGRVEA 621
PC C GTG V +
Sbjct: 496 PCPHCAGTGNVRS 508
>gi|213966157|ref|ZP_03394343.1| ribonuclease E [Corynebacterium amycolatum SK46]
gi|213951172|gb|EEB62568.1| ribonuclease E [Corynebacterium amycolatum SK46]
Length = 1236
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 131/331 (39%), Positives = 203/331 (61%), Gaps = 10/331 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +++VQV K+ +G KG LT + + RF + + G+SRK+ ER RLK I
Sbjct: 528 LKAGDQILVQVSKDPIGHKGARLTTHISMAGRFLVYVPGGRSAGISRKLPEPERKRLKSI 587
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ PEG G IRT A G S E ++ D++ L S W+ I E +++A + GA PI
Sbjct: 588 LSEVTPEGSGTIIRTAAEGVSKEAIEADIKRLESQWQEIWEASEAA-----KAKRGAKPI 642
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR---- 466
L+ + +V+D FNE ++VV+ R ++ VT Y+ D+AP+L R++ Y +
Sbjct: 643 ALYEEPDMLVKVVRDVFNEDFSRLVVEGDRPWNTVTDYIGDLAPELEPRLQRYFAKEHGG 702
Query: 467 IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
+F+ F I+E++ L ++V LP+GG+LVI++TEA+ IDVN G G G + E+ +
Sbjct: 703 ADVFEHFRIDEQLAKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTGAGGNLEETVT 761
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRD+GG+IVVDFIDM N+ LV +K+A+ RDRS +VSE++
Sbjct: 762 RNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRLKEALGRDRSRHEVSEVT 821
Query: 587 RHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
GL+++TRKR+ + S PC+CC G G
Sbjct: 822 SLGLVQMTRKRLGTGLLETFSTPCSCCNGRG 852
Score = 42.7 bits (99), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ VLED+ LVE + Q ++YLG V ++P+M AF++IG R ++
Sbjct: 453 VGVLEDDLLVEHFVTSDTQTTQIGNIYLGRVQNVLPSMEAAFIDIGTDRNGVI 505
>gi|261880408|ref|ZP_06006835.1| rne/Rng family ribonuclease [Prevotella bergensis DSM 17361]
gi|270332953|gb|EFA43739.1| rne/Rng family ribonuclease [Prevotella bergensis DSM 17361]
Length = 524
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 242/434 (55%), Gaps = 27/434 (6%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK- 277
V +++ +N +D G F +L+ L + N + +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYLKQVQSDRKKLYPFSKAS 101
Query: 278 ---DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + LQV G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 102 RLPDLKRDGSVQQTLQV--GQEVLVQIVKEPISTKGPRLTCELSFAGRFLVLIPFGDKVN 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + ++++P+G + +RTVA G + EL +L+ L W N +
Sbjct: 160 VSTKIKSGEERARLKQLIRSIKPKGCSVIVRTVAEGKRVAELDVELKVLTKRWLNAIVKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ D P L++ G+T+++++D FN + + V+ + EV Y+ IA
Sbjct: 220 QKTQ---DR------PQLVYEEEGRTVAMLRDLFNASYENIFVNEDDIFKEVKDYISLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P + V+ Y ++P+FD FN+ ++I + K V +G L+IE TEA+ +DVN G+
Sbjct: 271 PKKVNIVKRYKGKVPIFDNFNVTKQIKSSFGKTVNYAHGAYLIIEHTEAMHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ +E L+ NL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + KA+
Sbjct: 331 S-KNEKGQEGTALETNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKAM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS-----K 628
++DR+ + LS+ GLM+ITR+RVRP++ ++ E C C GTG++ + F+ K
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDVIVEENCPTCNGTGKIRS-SILFTDQLEGK 448
Query: 629 IEQEISRLLVSKSY 642
I+Q ++++ + K Y
Sbjct: 449 IDQLVNKIGIKKFY 462
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP +N +VY+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQNEPRSANFSVGNVYIAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|392538948|ref|ZP_10286085.1| RNase E [Pseudoalteromonas marina mano4]
Length = 1052
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 205/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VI+QV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIIQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA
Sbjct: 154 ALSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIRQAADSAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ C C G G V + E+ I I RL+ ++ +T
Sbjct: 382 GLLEMSRQRLRPSLGEASQGVCPRCSGQGTVRSNES----IALSILRLIEEEAIKDNTSQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 VNAQVP 443
>gi|288799935|ref|ZP_06405394.1| ribonuclease G [Prevotella sp. oral taxon 299 str. F0039]
gi|288333183|gb|EFC71662.1| ribonuclease G [Prevotella sp. oral taxon 299 str. F0039]
Length = 524
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 148/433 (34%), Positives = 242/433 (55%), Gaps = 25/433 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK- 277
V +++ +N +D G F +L+ L + N + +V D P
Sbjct: 46 VKKLMPGLNACFVDLGYERDAFLHYLD----LGSQFNSYDKYIKQVQSDRKKLSPFSKAL 101
Query: 278 ---DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ K ++ L V G +V+VQ+VKE + TKGP LT R+ +LI +++
Sbjct: 102 KLPEIKKDSSIQSTLSV--GQEVLVQIVKEPISTKGPRLTGELSFAGRYLVLIPFSNQVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L + W+
Sbjct: 160 VSSKIKSGEERARLKQLIHSIKPKNCGVIVRTVAEGKRVAELDAELKVLNNRWE------ 213
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
AA+ + + P L++ G+T+++++D FN + + V+ + E+ +YL+ IA
Sbjct: 214 --AAILKIQKTQKR-PQLIYEETGRTIALLRDLFNPSFENIYVNDEEVFAEIKNYLELIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
PD V++Y +P+FD FNI ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PDKASIVKMYSGTVPIFDNFNITKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++L+YE + K +
Sbjct: 331 TRSENGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQLLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKI 629
++DR+ + LS+ GLM+ITR+RVRP++ + E C C G G++ + E SKI
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAIDVNVEETCPTCFGKGKIRSSVLFTEQLESKI 449
Query: 630 EQEISRLLVSKSY 642
+Q I+++ + K Y
Sbjct: 450 DQLINKIGIHKFY 462
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ +VY+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKNLVEYQNESRSASFSVGNVYIAKVKKLMPGLNACFVDLGYERDAFL---HY 70
>gi|441179351|ref|ZP_20970089.1| ribonuclease, Rne/Rng family, partial [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440614438|gb|ELQ77711.1| ribonuclease, Rne/Rng family, partial [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 984
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 201/327 (61%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 358 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 417
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AK+ + ++ P
Sbjct: 418 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKAGSTSS--------PS 469
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ + + +F
Sbjct: 470 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWQTIHGYVSHVAPDLVDRLQKWTSDVDVF 529
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 530 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 588
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 589 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEVTSLGL 648
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SEPC C G G
Sbjct: 649 VQMTRKRVGQGLLESFSEPCVHCNGRG 675
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 261 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 319
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 320 MEAAFVDIGKGRNAVL 335
>gi|410628422|ref|ZP_11339142.1| ribonuclease E [Glaciecola mesophila KMM 241]
gi|410152028|dbj|GAC25911.1| ribonuclease E [Glaciecola mesophila KMM 241]
Length = 1054
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 148/404 (36%), Positives = 219/404 (54%), Gaps = 30/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 85 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A+S
Sbjct: 143 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAAESRP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD +RV
Sbjct: 200 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFANRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 253 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDRARV 370
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++ +SR GL+E++R+R+RPS+ C C G G V E+
Sbjct: 371 QLGRISRFGLLEMSRQRLRPSLGDSAHNVCPRCSGHGTVRGTES 414
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|417850957|ref|ZP_12496769.1| ribonuclease E [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
gi|338220191|gb|EGP05740.1| ribonuclease E [Pasteurella multocida subsp. gallicida str.
Anand1_poultry]
Length = 999
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 230/419 (54%), Gaps = 41/419 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 37 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 89
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 90 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 138
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 139 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 198
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 199 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 248
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 249 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 306
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 307 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 366
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
R+ +++S +SR GL+E++R+R+ PS+ C+ CQGTG++ E+L S ++ +E
Sbjct: 367 RARIQISRISRFGLLEMSRQRLSPSLGESSHHVCSRCQGTGKIRDNESLSLSILRLIEE 425
>gi|410663308|ref|YP_006915679.1| ribonuclease, Rne/Rng family protein [Simiduia agarivorans SA1 =
DSM 21679]
gi|409025665|gb|AFU97949.1| ribonuclease, Rne/Rng family protein [Simiduia agarivorans SA1 =
DSM 21679]
Length = 880
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 200/336 (59%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+
Sbjct: 38 LKEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERAELRD 97
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G G+ +RT G S EELQ DL+ L+ W N+ + A
Sbjct: 98 AINGLNVPQGMGIIVRTAGIGRSSEELQWDLDWLVQLWGNLSDAASG----------NKA 147
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L + + ++DY + V +++VD+ Y V++++ + P+ +++LY+ IP
Sbjct: 148 PAFLFQESNVIIRAIRDYLRQDVGEVIVDTREAYDLVSTFINQVMPNYHSKIKLYEDDIP 207
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ +E +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 208 LFNRYQVESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGGDIEETALQT 265
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRDIGG+ V+DFIDM + N+R V +++A+E DR+ V+V +S+
Sbjct: 266 NLEAATEIARQLRLRDIGGLAVIDFIDMQNAKNQREVENRIREALEMDRARVQVGRISKF 325
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GL+E++R+R+RPS+ +S+ C C G G + + ++
Sbjct: 326 GLLEMSRQRLRPSLEETMSKVCPRCSGQGTIRSTKS 361
>gi|422607844|ref|ZP_16679838.1| ribonuclease E, partial [Pseudomonas syringae pv. mori str. 301020]
gi|330891480|gb|EGH24141.1| ribonuclease E [Pseudomonas syringae pv. mori str. 301020]
Length = 1033
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 127/334 (38%), Positives = 201/334 (60%), Gaps = 14/334 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VI 350
+G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ +
Sbjct: 20 EGQEVIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREAL 79
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ P GL +RT G S EE+Q DL+ LL W I E + ++ + P
Sbjct: 80 NGLIAPADMGLIVRTAGLGRSSEEMQWDLDYLLQLWTAIKEAS----------LDRSAPF 129
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+++ + ++DY + + ++++DS E ++++ + P +++LY+ +PLF
Sbjct: 130 LIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEALTFIRQVMPQYASKIKLYEDSVPLF 189
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++F IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL
Sbjct: 190 NRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINSARAT--KGSDIEETALQTNL 247
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++IAR+LRLRDIGG+IV+DFIDM N+R V E+V++++E DR+ V++ +SR GL
Sbjct: 248 EAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVRESLEADRARVQIGRISRFGL 307
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
+E++R+R+RPS+ C C GTG + +E+
Sbjct: 308 LEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVES 341
>gi|359447828|ref|ZP_09237394.1| ribonuclease E [Pseudoalteromonas sp. BSi20480]
gi|358046331|dbj|GAA73643.1| ribonuclease E [Pseudoalteromonas sp. BSi20480]
Length = 1040
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 205/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VI+QV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIIQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA
Sbjct: 154 ALSRLELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIRQAADSAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D PR + E ++++ PD RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ C C G G V + E+ I I RL+ ++ +T
Sbjct: 382 GLLEMSRQRLRPSLGEASQGVCPRCSGQGTVRSNES----IALSILRLIEEEAIKDNTSQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 VNAQVP 443
>gi|91793654|ref|YP_563305.1| ribonuclease [Shewanella denitrificans OS217]
gi|91715656|gb|ABE55582.1| RNAse E [Shewanella denitrificans OS217]
Length = 1102
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 194/336 (57%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
VQ+G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VQEGQQVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++S
Sbjct: 154 AMADLEVPNGMGLIVRTAGVGKEANELKWDLKVLQHHWDAIQEASQSQN----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIGLVRPDFVERVKLYESEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G V + E+
Sbjct: 382 GLMEMSRQRLRPSLEESAAHICPRCHGQGTVRSTES 417
>gi|94266078|ref|ZP_01289796.1| Ribonuclease E and G [delta proteobacterium MLMS-1]
gi|93453361|gb|EAT03792.1| Ribonuclease E and G [delta proteobacterium MLMS-1]
Length = 513
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 150/421 (35%), Positives = 232/421 (55%), Gaps = 20/421 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADF---EDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQG 275
V VL + + ID G F +D L H ++ + + P +G
Sbjct: 46 VVRVLPGMQAAFIDVGLERTGFLYVDDVLVTSHEVEKRLDRCAKGEGSSP----CCGDEG 101
Query: 276 TKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGV 335
+ PG+ + +G +++VQV KE LG+KG LT + L R + + + IG+
Sbjct: 102 EMLLRRVPGQNIDDLLSEGQEILVQVCKEPLGSKGARLTCHITLPCRNLVFMPMTEHIGI 161
Query: 336 SRKITGVE-RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAK 394
SRKI + R L+ ++L+P G G +RTVA S EEL+ D+E LL TW I + A
Sbjct: 162 SRKIEDEDVRRMLRQDIESLRPSGTGFIVRTVAELASNEELEADMEFLLHTWSEIQDRAA 221
Query: 395 SAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAP 454
A VP L++ + TL +V+D F+ +V ++VVD P TY V +++ AP
Sbjct: 222 GAP----------VPSLVYEDLDITLRVVRDVFSPEVDEVVVDEPATYERVLEFVETFAP 271
Query: 455 DLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGM 514
L RV L P+F+ F I+ E+N L +++ L GG +VIE TEAL IDVN G +
Sbjct: 272 HLKGRVCLASGEPPIFESFGIDFEVNRALERKIWLRCGGYIVIEPTEALTVIDVNTGRYV 331
Query: 515 FGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVE 574
+G E+ I N+ AAK+IA +LRLR+IGGII+VDFIDM D+ ++ ++ +K+A +
Sbjct: 332 GKNGL--EETIFKTNMEAAKEIAYQLRLRNIGGIIIVDFIDMEDEEHREAIFNTLKEAAK 389
Query: 575 RDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEIS 634
+D+S + + +S GL+++TRKR R + ++ EPC CQGTG + + T+ +I + I
Sbjct: 390 KDKSRLNILRVSEFGLVQMTRKRNREDLEHLLCEPCATCQGTGVLRSGRTTSYEIFRTIE 449
Query: 635 R 635
R
Sbjct: 450 R 450
Score = 39.3 bits (90), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+ST +LIN++ + RIA+LE L E LE ++Y G V +++P M AF++
Sbjct: 1 MSTELLINATPYEI-RIALLEHGNLAEFHLEHPTEKGLVGNIYKGKVVRVLPGMQAAFID 59
Query: 134 IGNSRPSLMDI 144
+G R + +
Sbjct: 60 VGLERTGFLYV 70
>gi|68249015|ref|YP_248127.1| ribonuclease E [Haemophilus influenzae 86-028NP]
gi|68057214|gb|AAX87467.1| ribonuclease E [Haemophilus influenzae 86-028NP]
Length = 951
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 144/403 (35%), Positives = 220/403 (54%), Gaps = 38/403 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 56 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 108
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 109 I-----------LTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISR 157
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 158 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 217
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 218 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDF 267
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 268 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 325
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV D
Sbjct: 326 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPD 385
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG+V
Sbjct: 386 RARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKV 428
>gi|84394339|ref|ZP_00993061.1| ribonuclease E [Vibrio splendidus 12B01]
gi|84375032|gb|EAP91957.1| ribonuclease E [Vibrio splendidus 12B01]
Length = 1061
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 144/385 (37%), Positives = 216/385 (56%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLR--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|380034887|gb|AFD30839.1| RNaseE [Simiduia agarivorans SA1 = DSM 21679]
Length = 934
Score = 243 bits (619), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 125/336 (37%), Positives = 200/336 (59%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+
Sbjct: 92 LKEGQEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERAELRD 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G G+ +RT G S EELQ DL+ L+ W N+ + A
Sbjct: 152 AINGLNVPQGMGIIVRTAGIGRSSEELQWDLDWLVQLWGNLSDAASG----------NKA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L + + ++DY + V +++VD+ Y V++++ + P+ +++LY+ IP
Sbjct: 202 PAFLFQESNVIIRAIRDYLRQDVGEVIVDTREAYDLVSTFINQVMPNYHSKIKLYEDDIP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ +E +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 262 LFNRYQVESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGGDIEETALQT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRDIGG+ V+DFIDM + N+R V +++A+E DR+ V+V +S+
Sbjct: 320 NLEAATEIARQLRLRDIGGLAVIDFIDMQNAKNQREVENRIREALEMDRARVQVGRISKF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GL+E++R+R+RPS+ +S+ C C G G + + ++
Sbjct: 380 GLLEMSRQRLRPSLEETMSKVCPRCSGQGTIRSTKS 415
>gi|417840050|ref|ZP_12486206.1| Ribonuclease E [Haemophilus haemolyticus M19107]
gi|341950517|gb|EGT77105.1| Ribonuclease E [Haemophilus haemolyticus M19107]
Length = 937
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 229/419 (54%), Gaps = 41/419 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + +++
Sbjct: 142 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG+V E+L S ++ +E
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLIEE 428
>gi|294775456|ref|ZP_06740969.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
gi|294450697|gb|EFG19184.1| S1 RNA binding domain protein [Bacteroides vulgatus PC510]
Length = 537
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 216/355 (60%), Gaps = 15/355 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 129 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 188
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 189 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAP---------KLP 239
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ +HE+ Y+ IAP+ + V+LY ++P+
Sbjct: 240 ALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLPI 299
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 300 FDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 358
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 359 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 418
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
LM+ITR+RVRP++ +E C C G G ++ +T SKI+ +++L + +
Sbjct: 419 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKR 473
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ ++YLG V KL+P + FV++G + + + HY
Sbjct: 29 IALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDVGFEKDAFL---HY 83
>gi|119025257|ref|YP_909102.1| ribonuclease G [Bifidobacterium adolescentis ATCC 15703]
gi|118764841|dbj|BAF39020.1| ribonuclease G [Bifidobacterium adolescentis ATCC 15703]
Length = 937
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 200/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER RLK
Sbjct: 540 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERARLK 599
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I AK DE + G
Sbjct: 600 NIVSKIAPKDMGVIIRTAAEGASEEAITKDLENLVRQWERIT--AKR-----DEFLHGKR 652
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-- 466
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 653 PKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYERIEEYLDTMAPDLKDKLEKWDPAEH 712
Query: 467 --IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 713 DGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 771
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL AA++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 772 VTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 831
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 832 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 864
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 466 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 519
>gi|342904003|ref|ZP_08725805.1| Ribonuclease E [Haemophilus haemolyticus M21621]
gi|341954012|gb|EGT80506.1| Ribonuclease E [Haemophilus haemolyticus M21621]
Length = 937
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 229/419 (54%), Gaps = 41/419 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + +++
Sbjct: 142 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG+V E+L S ++ +E
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLIEE 428
>gi|423199888|ref|ZP_17186468.1| rne/Rng family ribonuclease [Aeromonas veronii AER39]
gi|404621500|gb|EKB18387.1| rne/Rng family ribonuclease [Aeromonas veronii AER39]
Length = 1009
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 219/385 (56%), Gaps = 32/385 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
PEG GL +RT G S EEL+ DL LL+ W +I + ++ E A P+L+
Sbjct: 158 LTVPEGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQ----------ERAAPVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + ++++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTG 617
++R+R+RPS+ S C CQG G
Sbjct: 386 MSRQRLRPSLNESSSHICPRCQGQG 410
>gi|423206689|ref|ZP_17193245.1| rne/Rng family ribonuclease [Aeromonas veronii AMC34]
gi|404622241|gb|EKB19106.1| rne/Rng family ribonuclease [Aeromonas veronii AMC34]
Length = 1028
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 219/385 (56%), Gaps = 32/385 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
PEG GL +RT G S EEL+ DL LL+ W +I + ++ E A P+L+
Sbjct: 158 LTVPEGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQ----------ERAAPVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + ++++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTG 617
++R+R+RPS+ S C CQG G
Sbjct: 386 MSRQRLRPSLNESSSHICPRCQGQG 410
>gi|336398225|ref|ZP_08579025.1| ribonuclease, Rne/Rng family [Prevotella multisaccharivorax DSM
17128]
gi|336067961|gb|EGN56595.1| ribonuclease, Rne/Rng family [Prevotella multisaccharivorax DSM
17128]
Length = 524
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 145/436 (33%), Positives = 245/436 (56%), Gaps = 31/436 (7%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + N + +V D HP
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYIKQVESDR--KHPVPFAK 99
Query: 279 SKHTPGEKTWLQVQK----GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ P + VQ+ G +V+VQ+VKE + TKGP LT+ RF +LI D++
Sbjct: 100 ATRLPELQKDGSVQQTLKVGQEVLVQIVKEPISTKGPRLTSELSFAGRFLVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G E++RLK + ++++P+ G+ +RTVA G + EL +L+ L S W++ +E
Sbjct: 160 VSSKIKSGEEKSRLKQLIQSIKPKNCGVIVRTVAEGKRVAELDAELKVLTSRWQSAIEKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ P L++ G+ +++++D FN + + V++ EV Y+ IA
Sbjct: 220 QKTQ---------QRPQLIYEETGRAVAMLRDLFNPTYENIYVNNEEICKEVKDYVTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ + V+ Y ++P+FD FN+ ++I + K V +G L+IE TEA+ +DVN G+
Sbjct: 271 PEKANIVKTYTGKVPIFDNFNVTKQIKSSFGKTVNYAHGAYLIIEHTEAMHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ + +E LD NL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 S-KNQNGQEGTALDTNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKDM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSF------- 626
++DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG++ +SF
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDVNVEEECPTCGGTGKI---RSSFLFTDQLE 446
Query: 627 SKIEQEISRLLVSKSY 642
KI+Q ++++ + K Y
Sbjct: 447 RKIDQLVNKIGIKKFY 462
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE E +N ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQNESRSANYSVGNIYVAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|417843043|ref|ZP_12489120.1| Ribonuclease E [Haemophilus haemolyticus M21127]
gi|341950277|gb|EGT76866.1| Ribonuclease E [Haemophilus haemolyticus M21127]
Length = 937
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 229/419 (54%), Gaps = 41/419 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L PEG GL +RT G S EELQ DL+ LL W+ I + +++
Sbjct: 142 RIEGDERTELKEALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG+V E+L S ++ +E
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLIEE 428
>gi|326440951|ref|ZP_08215685.1| ribonuclease E [Streptomyces clavuligerus ATCC 27064]
Length = 1372
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 200/333 (60%), Gaps = 11/333 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 796 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 855
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L + W +I + AKS G+ P
Sbjct: 856 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKS----------GSAPT 905
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 906 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSEVDVF 965
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 966 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 1024
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1025 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 1084
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALE 623
+++TRKRV + SE C C G G + +E
Sbjct: 1085 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 1117
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 699 FLARREAVERVMVVRQAGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 757
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 758 MEAAFVDIGKGRNAVL 773
>gi|119897904|ref|YP_933117.1| ribonuclease E [Azoarcus sp. BH72]
gi|119670317|emb|CAL94230.1| probable ribonuclease E [Azoarcus sp. BH72]
Length = 1014
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 154/448 (34%), Positives = 239/448 (53%), Gaps = 40/448 (8%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ ++I EP EA F D+ E +GF P K + S
Sbjct: 26 DLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY-------GAERHGFLPFK----EIS 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ G K + E +++G ++IVQV K+ G KG LT Y L R+ +L+
Sbjct: 75 RSYFQPGVDAGKASIKEA----LREGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMP 130
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ER L+ + L+ P G L RT A G S EELQ DL LL W
Sbjct: 131 NNPRGGGVSRRVEGDERAELRDVMDQLEVPGGMSLIARTAAIGRSAEELQWDLNYLLQLW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S + A L+++ + ++DYF ++ ++++D+ Y +
Sbjct: 191 TAIEGAATSQSGA----------FLIYQEGSLVIRAIRDYFQPEIGEILIDTDDIYEQAR 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P +RV+ Y +PLF +F IE +I + S++V LP+GG++VI+ TEALVSI
Sbjct: 241 QFMAHVMPGNVNRVKRYQDDVPLFSRFQIEHQIESAYSRQVGLPSGGAVVIDHTEALVSI 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G+ E+ NL AA +IAR+LRLRD+GG+IV+DFIDM N+R V
Sbjct: 301 DVNSGRAT--KGADIEETAFRTNLEAADEIARQLRLRDLGGLIVIDFIDMESQKNQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSF 626
++ A+ DR+ V+ ++SR GL+E++R+R+RP++ PC C GTG + + E+S
Sbjct: 359 NRLRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESSA 418
Query: 627 SKIEQEISRLLVSKSYNQSTFYFIRHIP 654
I R+L ++ ++T +P
Sbjct: 419 ----LHIVRILEEEAMKENTGAVHLQVP 442
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K + P
Sbjct: 64 RHGFLPFKEISRSYFQP 80
>gi|90407029|ref|ZP_01215219.1| ribonuclease E [Psychromonas sp. CNPT3]
gi|90311900|gb|EAS39995.1| ribonuclease E [Psychromonas sp. CNPT3]
Length = 984
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 216/385 (56%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K + S P G K P K +++G +
Sbjct: 54 EAAFVDY-GADRH------GFLPLK----EISRNYFPNGY-SFKGRPNIKEV--IKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT+LK L+
Sbjct: 100 VIIQIEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKEALSHLK 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P G GL +RT G + EEL+ DL L++ W I E +KS + P L+HR
Sbjct: 160 LPNGMGLIVRTAGVGKTAEELEWDLNVLVNHWHAIDEASKSKS----------APFLIHR 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++V+D +T+ + +++ + PD DR++LY IPLF +
Sbjct: 210 ESNVIVRSIRDYLRRDIGEIVIDHAKTFEQAKKHIEMVRPDYIDRLKLYQGEIPLFTYYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
+E +I + + V LP+GGS+VI+ TEAL SID+N G E+ + NL AA+
Sbjct: 270 VESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--RGGDIEETAFNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++++V +DR+ +++ +SR GLME++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPARHQREVENRMRESVRQDRARIQLGRISRFGLMEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+RPS+ S C C G G +
Sbjct: 388 RQRIRPSLGESASRVCPRCHGQGTI 412
>gi|423209599|ref|ZP_17196153.1| rne/Rng family ribonuclease [Aeromonas veronii AER397]
gi|404617457|gb|EKB14393.1| rne/Rng family ribonuclease [Aeromonas veronii AER397]
Length = 1030
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 219/385 (56%), Gaps = 32/385 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
PEG GL +RT G S EEL+ DL LL+ W +I + ++ E A P+L+
Sbjct: 158 LTVPEGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQ----------ERAAPVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + ++++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTG 617
++R+R+RPS+ S C CQG G
Sbjct: 386 MSRQRLRPSLNESSSHICPRCQGQG 410
>gi|392551388|ref|ZP_10298525.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Pseudoalteromonas spongiae UST010723-006]
Length = 994
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 209/366 (57%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL+ DL LL W I + ++S G
Sbjct: 154 ALSRLELPKGMGLIVRTAGVGKSFEELEYDLRALLVHWDAIKKASES----------GPA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ ++DY + ++++D R + E ++++ PD +RV+LY P
Sbjct: 204 PFLIHQESNVIFRAIRDYLRRDIGEILIDKQRVFDEAKAHIERFRPDFINRVKLYTGDAP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++K+AV+ DR+ V++ ++SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPPRHQRAVENKLKEAVKPDRARVQIGKISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ C C G G V + E+ + I RLL ++ +T
Sbjct: 382 GLLEMSRQRLRPSLGEASQGTCPRCNGQGTVRSNES----LALSILRLLEEEAIKDNTSQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 VNAQVP 443
>gi|417845384|ref|ZP_12491413.1| Ribonuclease E [Haemophilus haemolyticus M21639]
gi|341955220|gb|EGT81681.1| Ribonuclease E [Haemophilus haemolyticus M21639]
Length = 808
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/405 (35%), Positives = 224/405 (55%), Gaps = 39/405 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LS 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L PEG GL +RT G S EELQ DL+ LL W+ I + +++ P
Sbjct: 156 SSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
+E++R+R+ PS+ C CQGTG+V E+L S ++ +E
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLIEE 428
>gi|372271854|ref|ZP_09507902.1| ribonuclease, Rne/Rng family protein [Marinobacterium stanieri S30]
Length = 1062
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 229/407 (56%), Gaps = 37/407 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F DF E +GF P K E+ + P+ G++ ++ V++G
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFCKQPER--------GQRPNIKEVVKEG 94
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
T+VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +RT+LK ++
Sbjct: 95 TEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGDDRTQLKEALSG 154
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G G +RT G S EELQ DL+ L++ W I + A P L+
Sbjct: 155 VNIPDGMGAIVRTAGIGRSSEELQWDLDYLITLWDAIKAVNERPA-----------PFLV 203
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
++ + ++DY + ++++D+P Y + ++Q + P +R++LY ++ PLF++
Sbjct: 204 YQESNVVIRAIRDYLRADIGEVLIDNPSVYDQAQMFVQQVMPSYENRIKLYKEQTPLFNR 263
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL A
Sbjct: 264 FQIESQIETAFEREVKLPSGGSIVIDPTEALVSIDINSARAT--RGGDIEETALQTNLEA 321
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRDIGG+IV+DFIDM N+R V ++ A++ DR+ V++ +SR GL+E
Sbjct: 322 ADEIARQLRLRDIGGLIVIDFIDMTPIKNQREVENRLRDALKLDRARVQMGRISRFGLLE 381
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSK-IEQEISR 635
++R+R+RPS+ C C G G + E+L S + IE+E S+
Sbjct: 382 MSRQRLRPSLAESRGSVCPRCNGQGSIRDTESLALSILRLIEEESSK 428
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQPEELRVALVDGQRLFDLDIESDSREQKKANIYKGRITRVEPSLEAAFVDFGAE 60
Query: 138 RPSLMDIKHY-REPFIFPPFR 157
R + +K RE F P R
Sbjct: 61 RHGFLPLKEISREYFCKQPER 81
>gi|417840756|ref|ZP_12486864.1| Ribonuclease E [Haemophilus haemolyticus M19501]
gi|341950567|gb|EGT77154.1| Ribonuclease E [Haemophilus haemolyticus M19501]
Length = 938
Score = 242 bits (618), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/405 (35%), Positives = 224/405 (55%), Gaps = 39/405 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LS 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L PEG GL +RT G S EELQ DL+ LL W+ I + +++ P
Sbjct: 156 SSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
+E++R+R+ PS+ C CQGTG+V E+L S ++ +E
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLIEE 428
>gi|113970740|ref|YP_734533.1| RNAse E [Shewanella sp. MR-4]
gi|113885424|gb|ABI39476.1| RNAse E [Shewanella sp. MR-4]
Length = 1093
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 194/336 (57%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A+S A
Sbjct: 154 AMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQHHWAAITEAAQS----------KAA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 382 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES 417
>gi|330829707|ref|YP_004392659.1| ribonuclease E [Aeromonas veronii B565]
gi|328804843|gb|AEB50042.1| Ribonuclease E [Aeromonas veronii B565]
Length = 1027
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 219/385 (56%), Gaps = 32/385 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 51 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 94
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 95 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 154
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
PEG GL +RT G S EEL+ DL LL+ W +I + ++ E A P+L+
Sbjct: 155 LTVPEGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQ----------ERAAPVLI 204
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + ++++ + PD +RV+LY + LF+
Sbjct: 205 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVALFNH 264
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 265 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 322
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 323 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 382
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTG 617
++R+R+RPS+ S C CQG G
Sbjct: 383 MSRQRLRPSLNESSSHICPRCQGQG 407
>gi|254785799|ref|YP_003073228.1| ribonuclease E [Teredinibacter turnerae T7901]
gi|237684129|gb|ACR11393.1| ribonuclease E [Teredinibacter turnerae T7901]
Length = 1070
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 195/331 (58%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R+ LK
Sbjct: 95 VKEGMEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIDGDDRSELKD 154
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+++ P G G+ +RT G S EELQ D+ L + W NI E A +
Sbjct: 155 ALSQIEIPNGMGIIVRTAGVGRSAEELQWDMNYLTTLWNNIQEAAN----------QSTA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L + + ++DY + +++VD Y++ ++Q + P+ +V+LY+K +P
Sbjct: 205 PAFLFQESNVIIRAIRDYLRPDIGEVIVDDIAAYNQAADFVQMVMPNYRSKVKLYEKSVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+ + IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 265 LFNHYQIEGQIETAFEREVKLPSGGSIVIDVTEALVSIDINSSRAT--KGGDIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM N+R V V+ A++ DR+ V+V +SR
Sbjct: 323 NLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQRAVENRVRDALKMDRARVQVGRISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+RPS+ S+ C C G G +
Sbjct: 383 GLLEMSRQRLRPSLGETTSKVCPRCSGQGTI 413
>gi|407683488|ref|YP_006798662.1| RNase E [Alteromonas macleodii str. 'English Channel 673']
gi|407245099|gb|AFT74285.1| RNase E [Alteromonas macleodii str. 'English Channel 673']
Length = 1136
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 149/420 (35%), Positives = 229/420 (54%), Gaps = 32/420 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T P+G K + P K +++G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIARTYFPKGYK-FEGRPNIKDV--IKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK ++K
Sbjct: 100 VIVQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLD 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEG GL +RT G S EEL+ DL+ LL+ W+ I A+ E P L+H+
Sbjct: 160 LPEGMGLIVRTAGVGKSYEELEWDLKVLLTHWEAISSVAE----------EREAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++D Y + ++Q + PD +RV+LY +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFANRVKLYRGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+RPS+ C C G G + E+ + I R+L +S ++T +P
Sbjct: 388 RQRLRPSLGESAHHVCPRCSGHGTIRGTES----LALSILRILEEESIKENTGQIEAQLP 443
>gi|237712331|ref|ZP_04542812.1| ribonuclease G [Bacteroides sp. 9_1_42FAA]
gi|229453652|gb|EEO59373.1| ribonuclease G [Bacteroides sp. 9_1_42FAA]
Length = 524
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 216/355 (60%), Gaps = 15/355 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAP---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ +HE+ Y+ IAP+ + V+LY ++P+
Sbjct: 227 ALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 287 FDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
LM+ITR+RVRP++ +E C C G G ++ +T SKI+ +++L + +
Sbjct: 406 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKR 460
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDVGFEKDAFL---HY 70
>gi|406677047|ref|ZP_11084232.1| rne/Rng family ribonuclease [Aeromonas veronii AMC35]
gi|404625361|gb|EKB22178.1| rne/Rng family ribonuclease [Aeromonas veronii AMC35]
Length = 1012
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 219/385 (56%), Gaps = 32/385 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
PEG GL +RT G S EEL+ DL LL+ W +I + ++ E A P+L+
Sbjct: 158 LTVPEGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQ----------ERAAPVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + ++++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTG 617
++R+R+RPS+ S C CQG G
Sbjct: 386 MSRQRLRPSLNESSSHICPRCQGQG 410
>gi|410582605|ref|ZP_11319711.1| RNAse G [Thermaerobacter subterraneus DSM 13965]
gi|410505425|gb|EKP94934.1| RNAse G [Thermaerobacter subterraneus DSM 13965]
Length = 566
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 136/349 (38%), Positives = 208/349 (59%), Gaps = 14/349 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKV 349
++ G ++IVQ+ KE GTKG +T + L R +L+ + +GVSR+I ER RLK
Sbjct: 99 LRPGQEIIVQITKEPTGTKGARVTRHLTLPGRLLVLMPGVNYVGVSRRIHDEKERQRLKQ 158
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+A+ LQP G GL +RT A G S EL+ D+ L W +I + A+ P
Sbjct: 159 LAQELQPAGAGLIVRTAAEGRSEAELRGDVAYLTRLWADIQQRARRQR----------AP 208
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-IP 468
+LL+R +G +V+D +V ++++D P Y V + A L DRV+LY R I
Sbjct: 209 VLLYRDLGLVFRVVRDMLTPEVDQVLIDDPGEYRRVLDLMAAFATPLRDRVQLYQNREIS 268
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF++F + EEI L +RV L +GG LVI+QTEAL +IDVN G F + +
Sbjct: 269 LFEQFGVNEEIERALKRRVWLKSGGYLVIDQTEALTAIDVNTGK--FVGSKNLADTVFRT 326
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AA +IAR+LRLRDIGGIIV+DFIDM + ++++ V +E+++ + RD + V ++
Sbjct: 327 NMEAAAEIARQLRLRDIGGIIVIDFIDMEEPAHRQRVVQELERHLARDHTKATVLGITAL 386
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
GL+E+TRK+ R S+ ++ C C+G GRV + E++ ++ +EI R+L
Sbjct: 387 GLVEMTRKKGRRSLLEQLTRECPYCEGRGRVLSEESAARRVRREIKRIL 435
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDI 144
R+AVLED +LVE+ E + ++Y G V ++P M AFVNIG R + + +
Sbjct: 15 RVAVLEDGRLVEIYHERPSTQRVAGNIYKGRVENVLPGMQAAFVNIGLERNAFLYV 70
>gi|423313969|ref|ZP_17291904.1| rne/Rng family ribonuclease [Bacteroides vulgatus CL09T03C04]
gi|392683567|gb|EIY76901.1| rne/Rng family ribonuclease [Bacteroides vulgatus CL09T03C04]
Length = 524
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 216/355 (60%), Gaps = 15/355 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAP---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ +HE+ Y+ IAP+ + V+LY ++P+
Sbjct: 227 ALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 287 FDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
LM+ITR+RVRP++ +E C C G G ++ +T SKI+ +++L + +
Sbjct: 406 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKR 460
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDVGFEKDAFL---HY 70
>gi|345429652|ref|YP_004822770.1| bifunctional ribonucleaseE: endoribonuclease/RNA-binding
protein/RNA degradosome binding protein [Haemophilus
parainfluenzae T3T1]
gi|301155713|emb|CBW15181.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
degradosome binding protein [Haemophilus parainfluenzae
T3T1]
Length = 933
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 206/345 (59%), Gaps = 17/345 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERIELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + ++++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKAHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
+E++R+R+ PS+ C CQGTG+V E+L S ++ +E
Sbjct: 384 LEMSRQRLSPSLGESSHHVCPRCQGTGKVRDNESLSLSILRLIEE 428
>gi|358637864|dbj|BAL25161.1| ribonuclease E [Azoarcus sp. KH32C]
Length = 994
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 147/419 (35%), Positives = 229/419 (54%), Gaps = 36/419 (8%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ ++I EP EA F D+ E +GF P K + S
Sbjct: 26 DLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDY-------GSERHGFLPFK----EIS 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ G K + +++G ++IVQV K+ G KG LT Y L R+ +L+
Sbjct: 75 RSYFAPGVDAGKA----RIQDALREGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMP 130
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ER L+ + L+ P G L RT A G + EELQ DL LL W
Sbjct: 131 NNPRGGGVSRRVEGDERNELREVMDQLESPAGMSLIARTAAIGRNAEELQWDLNYLLQLW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ I A+S + A L+++ + ++DYF + ++++D+ Y +
Sbjct: 191 RAIEGAAQSQSGA----------FLIYQEGSLVIRAIRDYFQPDIGEILIDTDDIYEQAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P +RV+ Y +PLF +F IE +I + S++V LP+GG++VI+ TEALVSI
Sbjct: 241 QFMAHVMPGNVNRVKRYSDDVPLFSRFQIEHQIESAYSRQVSLPSGGAVVIDHTEALVSI 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G+ E+ NL AA++IAR+LRLRD+GG+IV+DFIDM N+R V
Sbjct: 301 DVNSGRST--KGADIEETAFRTNLEAAEEIARQLRLRDLGGLIVIDFIDMESQKNQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ A+ DR+ V+ ++SR GL+E++R+R+RP++ PC C GTG + + E+S
Sbjct: 359 SRLRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYIPCPRCNGTGHIRSTESS 417
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T++ P++ AFV+ G+
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKAVITRIEPSLEAAFVDYGSE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K + P
Sbjct: 64 RHGFLPFKEISRSYFAP 80
>gi|445422183|ref|ZP_21436338.1| ribonuclease E/G family protein [Acinetobacter sp. WC-743]
gi|444756853|gb|ELW81391.1| ribonuclease E/G family protein [Acinetobacter sp. WC-743]
Length = 1135
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ Y L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTYISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 MLASLNTPRGMSVIVRTAGIGRSQEELQLDLQHLLDLWAQIQNSANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P+ D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPNQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALST 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|352101010|ref|ZP_08958521.1| ribonuclease, Rne/Rng family protein [Halomonas sp. HAL1]
gi|350600931|gb|EHA16988.1| ribonuclease, Rne/Rng family protein [Halomonas sp. HAL1]
Length = 1078
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 196/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
+++G +VIVQV KE G KG LT + L RF +L+ + R G +SR+I G ER++LK
Sbjct: 92 LKEGQEVIVQVDKEERGNKGAALTTFVSLAGRFLVLMPNNPRAGGISRRIEGDERSQLKD 151
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ + P+ GL +RT G + EELQ DL+ L+ W++I E +
Sbjct: 152 AMGQLTVPDKMGLIVRTAGIGRNPEELQWDLDYLVQVWESIT----------TEAAKRPA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L++R + ++DY + + ++++DSP + E S+++ + P +++LY +P
Sbjct: 202 PFLIYRESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALSFIRQVMPSYQQKIKLYADEVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L
Sbjct: 262 LFSRFQIESQIETAYQREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA +IAR+LRLRDIGG++V+DFIDM N+R V ++ A++ DR+ V++ +SR
Sbjct: 320 NSEAADEIARQLRLRDIGGLVVIDFIDMGPARNQREVENRMRDALKLDRARVQIGRISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GLME++R+R+RPS+ C C G G +
Sbjct: 380 GLMEMSRQRLRPSLGETSGVVCPRCNGQGTI 410
>gi|150006583|ref|YP_001301327.1| ribonuclease G [Bacteroides vulgatus ATCC 8482]
gi|265752042|ref|ZP_06087835.1| ribonuclease G [Bacteroides sp. 3_1_33FAA]
gi|319642900|ref|ZP_07997536.1| ribonuclease G [Bacteroides sp. 3_1_40A]
gi|345512926|ref|ZP_08792450.1| ribonuclease G [Bacteroides dorei 5_1_36/D4]
gi|345521606|ref|ZP_08800929.1| ribonuclease G [Bacteroides sp. 4_3_47FAA]
gi|423229300|ref|ZP_17215705.1| rne/Rng family ribonuclease [Bacteroides dorei CL02T00C15]
gi|423240123|ref|ZP_17221238.1| rne/Rng family ribonuclease [Bacteroides dorei CL03T12C01]
gi|423245143|ref|ZP_17226217.1| rne/Rng family ribonuclease [Bacteroides dorei CL02T12C06]
gi|149935007|gb|ABR41705.1| ribonuclease G [Bacteroides vulgatus ATCC 8482]
gi|229434993|gb|EEO45070.1| ribonuclease G [Bacteroides dorei 5_1_36/D4]
gi|263236834|gb|EEZ22304.1| ribonuclease G [Bacteroides sp. 3_1_33FAA]
gi|317385448|gb|EFV66391.1| ribonuclease G [Bacteroides sp. 3_1_40A]
gi|345456518|gb|EET14617.2| ribonuclease G [Bacteroides sp. 4_3_47FAA]
gi|392634269|gb|EIY28194.1| rne/Rng family ribonuclease [Bacteroides dorei CL02T00C15]
gi|392640076|gb|EIY33882.1| rne/Rng family ribonuclease [Bacteroides dorei CL02T12C06]
gi|392645112|gb|EIY38846.1| rne/Rng family ribonuclease [Bacteroides dorei CL03T12C01]
Length = 524
Score = 242 bits (617), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 216/355 (60%), Gaps = 15/355 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAP---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ +HE+ Y+ IAP+ + V+LY ++P+
Sbjct: 227 ALVYEETSRTVAMLRDLFNPSYENIYVNDETVFHEIKDYVSLIAPERAEIVKLYKGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K + +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 287 FDNFGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRS-KSANGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
LM+ITR+RVRP++ +E C C G G ++ +T SKI+ +++L + +
Sbjct: 406 LMQITRQRVRPAMDVNTNETCPTCFGKGSIKPSILFTDTLESKIDYLVNKLKIKR 460
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVE E ++ ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKALVEFQKEGRSASFNVGNMYLGRVKKLMPGLNACFVDVGFEKDAFL---HY 70
>gi|56460457|ref|YP_155738.1| RNase E [Idiomarina loihiensis L2TR]
gi|56179467|gb|AAV82189.1| RNase E [Idiomarina loihiensis L2TR]
Length = 980
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 149/420 (35%), Positives = 232/420 (55%), Gaps = 32/420 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T PQG + P K V++G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAKTYFPQGYT-FQGRPNIKDV--VKEGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ER+ LK L
Sbjct: 97 VIVQIDKEERGQKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERSALKEALSDLN 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ GL +RT G S EEL+ DL LL+ W+ I + AADE P L+H+
Sbjct: 157 VPKEMGLIVRTAGVGKSKEELEWDLNVLLNHWEAI-------SKAADER---PAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
++DY + ++++DSP+ Y +V S++Q I PD RV+ Y+ +PLF +
Sbjct: 207 ESNVIFRALRDYLRRDIGEVLIDSPKVYEQVRSHIQLIRPDFLQRVKQYEGDVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL AA+
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEAAE 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ ++ +DR+ ++V+ +SR GLME++
Sbjct: 325 EIARQLRLRDVGGLVVIDFIDMTPARHQRDVENRLRDSLSQDRARIQVARISRFGLMEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+RPS+ + C C G G + + ++ + I RL+ ++ +T +P
Sbjct: 385 RQRLRPSLGESANNVCPRCNGQGTIRSSDS----LALSILRLIEEEAIKDNTIQVHAQVP 440
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQLEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 61 RHGFLPLKEIAKTY-FP 76
>gi|383309858|ref|YP_005362668.1| ribonuclease E [Pasteurella multocida subsp. multocida str. HN06]
gi|380871130|gb|AFF23497.1| ribonuclease E [Pasteurella multocida subsp. multocida str. HN06]
Length = 1007
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 229/419 (54%), Gaps = 41/419 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG++ E+L S ++ +E
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEE 428
>gi|410622783|ref|ZP_11333607.1| ribonuclease E [Glaciecola pallidula DSM 14239 = ACAM 615]
gi|410157656|dbj|GAC28981.1| ribonuclease E [Glaciecola pallidula DSM 14239 = ACAM 615]
Length = 1087
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 148/404 (36%), Positives = 224/404 (55%), Gaps = 30/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ D H GF P K + + T P G K +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-GADRH------GFLPLK----EIAKTYFPSGYK-LEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K V++GT+VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 85 PNIKDV--VREGTQVIVQVDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK + K P+ GL +RT G S EELQ DL L++ W NIM+ ++S
Sbjct: 143 DERTDLKHALGKLELPDSMGLIVRTAGVGKSYEELQWDLGVLVNHWSNIMKASESKP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+P + + ++++ + PD RV
Sbjct: 200 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDNPAVFEKALAHIELVRPDFVSRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N G
Sbjct: 253 KLYEGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARST--KGGD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV+ DR+ +
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVKHQREVENRMKDAVKPDRARI 370
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++ +SR GL+E++R+R+RPS+ C C G G V E+
Sbjct: 371 QLGRISRFGLLEMSRQRLRPSLGESAYHVCPRCSGHGTVRGTES 414
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQSEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAD 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 61 RHGFLPLKEIAKTY-FP 76
>gi|406025284|ref|YP_006705585.1| ribonuclease G [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
gi|404432883|emb|CCM10165.1| Ribonuclease G [Cardinium endosymbiont cEper1 of Encarsia
pergandiella]
Length = 517
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 157/453 (34%), Positives = 252/453 (55%), Gaps = 38/453 (8%)
Query: 203 QFEHNDDEEHDGDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPS 260
Q E D++ GD + + +V+ ++N S +D G + F +L+ + N
Sbjct: 28 QVEKEDNKFKVGDIYLGIIKKVVPSLNASFVDVGYKKDAFLHYLDLGPQFNSLKNAI--- 84
Query: 261 KSEVPDDSHTSHPQGTKDS-----KHTPGEKTWL---QVQKGTKVIVQVVKEGLGTKGPT 312
H QG ++ P +K + KG +V+VQ+VKE + +KGP
Sbjct: 85 -------QVVRHQQGNVENLVDFVVEPPIDKLGKIGDVLTKGQEVLVQIVKEPISSKGPR 137
Query: 313 LTAYPKLRSRFWILITSCDRIGVSRKIT-GVERTRLKVIAKTLQPEGFGLTIRTVAAGHS 371
+ + L R+ ILI D I +S+KIT G ER RL + +++P+ FG+ +RTVA G
Sbjct: 138 IASELTLPGRYMILIPFVDTISISKKITNGEERDRLHRLIASIKPKNFGVIVRTVAKGID 197
Query: 372 LEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKV 431
+ L +DL+ L++ WK +E +A E V G V +RA +I++D NE
Sbjct: 198 VATLDRDLKDLINKWKKGIEQLVNAL--PGEKVIGEV----NRAY----TILRDMLNESF 247
Query: 432 KKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPN 491
+VVD Y E+ Y+ IAPD ++L+ +I LF+++ IE ++ + + V +
Sbjct: 248 DSIVVDDQLLYTEIKQYIHTIAPDKEKILKLHQGKIKLFEQWGIERQLKTLFGQTVGIEG 307
Query: 492 GGSLVIEQTEALVSIDVNGGHGMF---GHGSSKEKAILDVNLAAAKQIARELRLRDIGGI 548
GG LVIE TEA+ IDVN G+ G G K L+VNLAAA++I R+LRLRD+GGI
Sbjct: 308 GGYLVIEHTEAMHVIDVNSGNRALDEEGQG----KMALNVNLAAAQEITRQLRLRDMGGI 363
Query: 549 IVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISE 608
IVVDFID+ D ++RL+Y+++K+ ++ DR+ V LS+ +M+ITR+RVRP + + E
Sbjct: 364 IVVDFIDIKDIEDRRLLYQKMKELMKEDRAKTSVLPLSKFSIMQITRQRVRPEMNVVTRE 423
Query: 609 PCTCCQGTGRVEALETSFSKIEQEISRLLVSKS 641
C C GTG+++A +IE+ + +L++++
Sbjct: 424 LCPSCNGTGKIDASILVSERIEENLRLVLMNQN 456
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 79 LINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSR 138
LI +S RIA+L+ L E +E + + +YLG++ K+VP++ +FV++G +
Sbjct: 5 LIINSTDNNCRIALLKGGNLFEYQVEKEDNKFKVGDIYLGIIKKVVPSLNASFVDVGYKK 64
Query: 139 PSLMDIKHY 147
+ + HY
Sbjct: 65 DAFL---HY 70
>gi|425065857|ref|ZP_18468977.1| Ribonuclease [Pasteurella multocida subsp. gallicida P1059]
gi|404383352|gb|EJZ79806.1| Ribonuclease [Pasteurella multocida subsp. gallicida P1059]
Length = 1004
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 229/419 (54%), Gaps = 41/419 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG++ E+L S ++ +E
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEE 428
>gi|109898451|ref|YP_661706.1| ribonuclease [Pseudoalteromonas atlantica T6c]
gi|109700732|gb|ABG40652.1| RNAse E [Pseudoalteromonas atlantica T6c]
Length = 1070
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 148/404 (36%), Positives = 218/404 (53%), Gaps = 30/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 55 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 102
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 103 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 160
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A S
Sbjct: 161 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRP--- 217
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD +RV
Sbjct: 218 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFANRV 270
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 271 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 328
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 329 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDRARV 388
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++ +SR GL+E++R+R+RPS+ C C G G V E+
Sbjct: 389 QLGRISRFGLLEMSRQRLRPSLGDSAHNVCPRCSGHGTVRGTES 432
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 66 SLISKDNFVSTVI-----LINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
S I D + + I LIN++ R+A+++ +KL +L +E + ++Y G +
Sbjct: 2 SFIRGDRYTTESIRMKRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTI 61
Query: 121 TKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFP 154
T++ P++ AFV+ G R + +K + FP
Sbjct: 62 TRVEPSLEAAFVDYGAERHGFLPLKEIARTY-FP 94
>gi|425063689|ref|ZP_18466814.1| Ribonuclease [Pasteurella multocida subsp. gallicida X73]
gi|404382243|gb|EJZ78704.1| Ribonuclease [Pasteurella multocida subsp. gallicida X73]
Length = 1004
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 229/419 (54%), Gaps = 41/419 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG++ E+L S ++ +E
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEE 428
>gi|403050232|ref|ZP_10904716.1| ribonuclease E [Acinetobacter bereziniae LMG 1003]
Length = 1135
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ Y L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTYISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 152 MLASLNTPRGMSVIVRTAGIGRSQEELQLDLQHLLDLWAQIQNSANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P+ D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPNQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALST 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|418465794|ref|ZP_13036726.1| ribonuclease E [Aggregatibacter actinomycetemcomitans RhAA1]
gi|359755292|gb|EHK89456.1| ribonuclease E [Aggregatibacter actinomycetemcomitans RhAA1]
Length = 964
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 199/331 (60%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 412
>gi|392397233|ref|YP_006433834.1| ribonuclease, Rne/Rng family [Flexibacter litoralis DSM 6794]
gi|390528311|gb|AFM04041.1| ribonuclease, Rne/Rng family [Flexibacter litoralis DSM 6794]
Length = 521
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 152/431 (35%), Positives = 235/431 (54%), Gaps = 22/431 (5%)
Query: 200 DLVQFEHNDDEEHD---GDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGES 254
+LV+F H+D+ H GD + V ++ +N + ID G + F +L+ ++
Sbjct: 23 NLVEF-HHDEGNHQFSVGDMYLGTVRRIVPGMNAAFIDIGYEKDAFLHYLDLGPNVSSLI 81
Query: 255 NGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ---VQKGTKVIVQVVKEGLGTKGP 311
+S P ++ + + T P +K ++ V+VQVVKE + TKGP
Sbjct: 82 KYTKQVRSNNPKNAQQDY-KFTNFQLEKPIDKLGKMGDVLKPNQLVLVQVVKEPISTKGP 140
Query: 312 TLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGH 370
L+ L R+ +L+ +R+ +SRKIT ER RL+ + +++PEGFG+ +RTVA G
Sbjct: 141 RLSCQLSLAGRYLVLVPFDERVLISRKITNKTERRRLQRLIDSIKPEGFGVIVRTVAEGK 200
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ EL +D+ L W+ M + SA + V G + + S+++D NE
Sbjct: 201 DVAELDRDMSTLSDKWRGGMANLSSAK--PRDKVIGEI--------SKATSMLRDLLNES 250
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ VD T+ + Y+ IAPD V++Y+ R +F+ F IE ++ + K V LP
Sbjct: 251 FDSITVDDASTFDTIKEYIHKIAPDKERIVKMYNGRGKIFETFGIERQLKLLFGKTVSLP 310
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVIE TEAL +DVN G+ + +E L VNL A ++AR+L+LRD+GGIIV
Sbjct: 311 SGGYLVIEHTEALHVVDVNSGNKSSSE-NDQETTALKVNLEAGAEVARQLQLRDMGGIIV 369
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDM N+R +YE +KK + DRS + LS+ GLM+ITR+RVRP + E C
Sbjct: 370 IDFIDMRKLENRRALYEHMKKVMHTDRSKFTILPLSKFGLMQITRQRVRPELNIATREIC 429
Query: 611 TCCQGTGRVEA 621
C GTG++ A
Sbjct: 430 PSCNGTGKISA 440
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
RIA+L+D LVE + +YLG V ++VP M AF++IG + + + HY
Sbjct: 15 RIALLQDRNLVEFHHDEGNHQFSVGDMYLGTVRRIVPGMNAAFIDIGYEKDAFL---HY 70
>gi|325579065|ref|ZP_08149021.1| ribonuclease E [Haemophilus parainfluenzae ATCC 33392]
gi|325159300|gb|EGC71434.1| ribonuclease E [Haemophilus parainfluenzae ATCC 33392]
Length = 937
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 206/345 (59%), Gaps = 17/345 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERIELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + ++++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKAHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
+E++R+R+ PS+ C CQGTG+V E+L S ++ +E
Sbjct: 384 LEMSRQRLSPSLGESSHHVCPRCQGTGKVRDNESLSLSILRLIEE 428
>gi|15602856|ref|NP_245928.1| hypothetical protein PM0991 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721318|gb|AAK03075.1| Rne [Pasteurella multocida subsp. multocida str. Pm70]
Length = 1004
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 229/419 (54%), Gaps = 41/419 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG++ E+L S ++ +E
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEE 428
>gi|407687473|ref|YP_006802646.1| RNase E [Alteromonas macleodii str. 'Balearic Sea AD45']
gi|407290853|gb|AFT95165.1| RNase E [Alteromonas macleodii str. 'Balearic Sea AD45']
Length = 1134
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 149/420 (35%), Positives = 229/420 (54%), Gaps = 32/420 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T P+G K + P K +++G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIARTYFPKGYK-FEGRPNIKDV--IKEGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK ++K
Sbjct: 97 VIVQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLD 156
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEG GL +RT G S EEL+ DL+ LL+ W+ I A+ E P L+H+
Sbjct: 157 LPEGMGLIVRTAGVGKSYEELEWDLKVLLTHWEAISSVAE----------EREAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++D Y + ++Q + PD +RV+LY +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFANRVKLYRGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+RPS+ C C G G + E+ + I R+L +S ++T +P
Sbjct: 385 RQRLRPSLGESAHHVCPRCSGHGTIRGTES----LALSILRILEEESIKENTGQIEAQLP 440
>gi|419801261|ref|ZP_14326498.1| ribonuclease E/G family protein [Haemophilus parainfluenzae HK262]
gi|419845451|ref|ZP_14368721.1| ribonuclease E/G family protein [Haemophilus parainfluenzae HK2019]
gi|385193992|gb|EIF41338.1| ribonuclease E/G family protein [Haemophilus parainfluenzae HK262]
gi|386415564|gb|EIJ30090.1| ribonuclease E/G family protein [Haemophilus parainfluenzae HK2019]
Length = 930
Score = 242 bits (617), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 206/345 (59%), Gaps = 17/345 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 93 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERIELKEAL 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 153 SSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + ++++ + PD +RV+LY +PLF
Sbjct: 203 LIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKAHIKLVRPDFINRVKLYQGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 380
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
+E++R+R+ PS+ C CQGTG+V E+L S ++ +E
Sbjct: 381 LEMSRQRLSPSLGESSHHVCPRCQGTGKVRDNESLSLSILRLIEE 425
>gi|309802884|ref|ZP_07696985.1| ribonuclease, Rne/Rng family [Bifidobacterium dentium JCVIHMP022]
gi|308220351|gb|EFO76662.1| ribonuclease, Rne/Rng family [Bifidobacterium dentium JCVIHMP022]
Length = 917
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 201/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 524 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 583
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I + DE + G
Sbjct: 584 GIVSKIAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERI-------SAKRDEFLHGKR 636
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 637 PKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRIEEYLDTMAPDLKDKLEKWDPAEH 696
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 697 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 755
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 756 VTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 815
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 816 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 848
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 450 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 503
>gi|149192305|ref|ZP_01870514.1| ribonuclease E [Vibrio shilonii AK1]
gi|148833858|gb|EDL50886.1| ribonuclease E [Vibrio shilonii AK1]
Length = 1014
Score = 241 bits (616), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 216/385 (56%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 81 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKDVLS--EGQE 126
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 127 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTELKAALSTLE 186
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W+NI AAD+ P L+H+
Sbjct: 187 LPQGMGLIVRTAGVGKSAEELEWDLRFLLNNWENIKG-------AADQN---PAPFLIHQ 236
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 237 ESNVIVRALRDYLRRDIGEILIDSNTIYERARQHIQLVRPDFVNRVKKYEGEVPLFSHYQ 296
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L+ NL AA
Sbjct: 297 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALNTNLEAAD 354
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 355 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRIDRARVQIGRISRFGLLEMS 414
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 415 RQRLSPSLAEASHHICPRCTGTGVV 439
>gi|78189942|ref|YP_380280.1| ribonuclease E and G [Chlorobium chlorochromatii CaD3]
gi|78172141|gb|ABB29237.1| Ribonuclease E and G [Chlorobium chlorochromatii CaD3]
Length = 568
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 143/406 (35%), Positives = 231/406 (56%), Gaps = 24/406 (5%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGT- 295
EA ++ E D DGE+ P + S++ P + S P +T+ Q+ G
Sbjct: 106 EATGQNDSEFDEASDGETTVSAP---KTVARSNSKKPSSGEQSGEKP--QTYTQMIAGKL 160
Query: 296 ----KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT-SCDRIGVSRKITG-VERTRLKV 349
++VQV+KE + +KG LT+ + RF +L+ ++ VSR++ ER+RLK
Sbjct: 161 KPNDSILVQVIKEPISSKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERSRLKK 220
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++ PEGFG IRTVA L++DLE LL+ WK I E + A P
Sbjct: 221 LVRSILPEGFGAIIRTVAEDQEEALLKQDLEKLLTKWKQIEEKLQDAT----------PP 270
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L+ + S+++D V ++V +SP Y E +Y++ AP++ V LY ++PL
Sbjct: 271 QLIFKEDTIISSVLRDSLTSDVSEIVANSPAIYKETLNYIEWAAPEMVKNVALYQGKLPL 330
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+ + I +++ ++ S++V L +GG ++IE TEA+V +DVN G + +E+ L N
Sbjct: 331 FEGYAIAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGR--YAAKREQEENSLKTN 388
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA+++ R+LRLRDIGGIIVVDFIDM D N + +Y+ VK + DR+ + +S G
Sbjct: 389 LEAAREVVRQLRLRDIGGIIVVDFIDMLDPKNAKKIYDAVKTELRNDRAKSNILPMSDFG 448
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
LM+ITR+R+RPS+ + + C C GTG V+A T+ ++IE+ + +
Sbjct: 449 LMQITRERIRPSLMQRMGDQCPACGGTGIVQARFTTINQIERWLRK 494
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGN 136
+L+N + +Q +A++E+ +LVEL++E +S +YLG V K+V + AFV+IG
Sbjct: 9 LLMNKTGDEIQ-VALVEEGRLVELIIERPESRRSIGDIYLGRVHKVVEGLKAAFVDIGQ 66
>gi|405980882|ref|ZP_11039211.1| rne/Rng family ribonuclease [Actinomyces neuii BVS029A5]
gi|404392901|gb|EJZ87958.1| rne/Rng family ribonuclease [Actinomyces neuii BVS029A5]
Length = 784
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 199/327 (60%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G K++VQV K+ +G KG LTA L R+ +++ + +G+SRK+ G ER+RLK I
Sbjct: 285 LKSGDKIMVQVTKDPIGHKGARLTAQITLAGRYLVMVPGGNMMGISRKLPGSERSRLKSI 344
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P+G G+ +RT A G + E+++ D+E L S W+++ + + A A P+
Sbjct: 345 LKDVVPKGNGVIVRTAAEGATEEQIRADIERLASQWQSVQDKSAKATKA---------PM 395
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL L +V+D FNE +VV Y + Y+++++PDL DRV + K +F
Sbjct: 396 LLKGEPELALRVVRDIFNEDFNSLVVQGKDAYKSIHDYVKELSPDLLDRVHQWAKNDDIF 455
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
I+E++ + ++V LP+GG L+I++TEA+ IDVN G G + E+ + NL
Sbjct: 456 AAHRIDEQLAKGMDRKVWLPSGGYLIIDRTEAMTVIDVNTGKYTGGKQGTLEETVTKNNL 515
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
+A++I R+LRLRDIGGIIV+DF+DM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 516 ESAEEIVRQLRLRDIGGIIVIDFVDMVLESNRSLVLRRLIECLGRDRTRHQVTEVTALGL 575
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + S PC CC G G
Sbjct: 576 VQMTRKRVGQGLVEAFSTPCECCDGRG 602
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ +IAVLED+ LVE + S++LG V ++P+M AFV++G R +++
Sbjct: 207 LNQIAVLEDDLLVEHYVASHTQVSMVGSIFLGRVQNVLPSMEAAFVDLGRGRNAVL 262
>gi|373460231|ref|ZP_09551986.1| rne/Rng family ribonuclease [Prevotella maculosa OT 289]
gi|371956316|gb|EHO74105.1| rne/Rng family ribonuclease [Prevotella maculosa OT 289]
Length = 524
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 248/459 (54%), Gaps = 29/459 (6%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP----Q 274
V +++ +N +D G F +L+ L + N + +V D +P Q
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYTKYLKQVSSDRKRLYPFSKAQ 101
Query: 275 GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K + L V G +V+VQ++KE + TKGP LT RF +LI D++
Sbjct: 102 KLPDLKKDGSVQQVLTV--GQEVLVQIIKEPISTKGPRLTGELSFAGRFIVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL ++ L W++ +
Sbjct: 160 VSSKIKSGEERARLKQLIYSIKPKNCGVIVRTVAEGKRVAELDTEMNVLTKRWEDAILKT 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ + P L+ G+ +++++D FN + + V++ Y+EV YL IA
Sbjct: 220 QK---------QQKRPQLVFEETGRAIAMLRDLFNPSFENIYVNNEEAYNEVKHYLTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+ Y ++P+FD FN+ ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PEKAGIVKHYTGKVPIFDNFNVTKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 TRSENGQEANA-LDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEI 633
++DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG++ + ++E++I
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDVNVEETCPTCNGTGKIRSSILFTDQLERKI 449
Query: 634 SRLL----VSKSYNQSTFYFIRHIPK----RRKHLKLEY 664
L+ ++K Y Y +I K R+ +L+Y
Sbjct: 450 DSLVNKIGITKFYLHIHPYVAAYINKGFISLRRKWQLKY 488
Score = 45.4 bits (106), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+KLVE EP +++ ++Y V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKKLVEYQNEPRQASFSVGNIYAAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|395779955|ref|ZP_10460423.1| rne/Rng family ribonuclease [Bartonella washoensis 085-0475]
gi|395419705|gb|EJF86001.1| rne/Rng family ribonuclease [Bartonella washoensis 085-0475]
Length = 873
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 171/551 (31%), Positives = 275/551 (49%), Gaps = 46/551 (8%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A LEE + + N DV
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL----------ALLEEE----EKAAVGENHADVF 106
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
++ + + +E++ S + +V +II D D ED H + E
Sbjct: 107 IEETNKNKKRSRKTKNEKN-------SIMAADVENNIISDAITTEDTEDAFTDVPHDEIE 159
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
G ++ E+P T K K +++ ++VQV+KE G KG L
Sbjct: 160 MVGAEDAREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAAL 209
Query: 314 TAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G +SRKIT V+ R RLK I K L P+G G+ +RT A
Sbjct: 210 TTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLKEIVKELAVPKGMGVILRTAGANR 269
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L W + ++ L + P L+H ++D +N+
Sbjct: 270 TKAEIKRDYEYLTRLWDTV----RTLTLKS------TAPCLVHEESNLIKRSIRDLYNKN 319
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V L
Sbjct: 320 INEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLHPQVSLK 379
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 380 SGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRDLAGLIV 437
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDM +D N R+V +++K ++ DR+ ++V +S GL+E++R+R+R SV ++PC
Sbjct: 438 IDFIDMLEDRNVRMVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQRIRVSVLESTTQPC 497
Query: 611 TCCQGTGRVEA 621
C GTG V +
Sbjct: 498 PHCAGTGNVRS 508
>gi|342904696|ref|ZP_08726495.1| hydroxyethylthiazole kinase [Haemophilus haemolyticus M21621]
gi|341953117|gb|EGT79631.1| hydroxyethylthiazole kinase [Haemophilus haemolyticus M21621]
Length = 751
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 138/390 (35%), Positives = 219/390 (56%), Gaps = 32/390 (8%)
Query: 252 GESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLG 307
E +GF P ++ PDD +D + +G +VIVQV KE G
Sbjct: 5 AERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LSEGQEVIVQVNKEERG 53
Query: 308 TKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRT 365
KG LT + L + +++ + R G +SR+I G ERT LK +L PEG GL +RT
Sbjct: 54 NKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERTELKEALSSLDVPEGVGLIVRT 113
Query: 366 VAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQD 425
G S EELQ DL+ LL W+ I + +++ P L+H+ + ++D
Sbjct: 114 AGVGKSPEELQWDLKVLLHHWEAIKQASQNRP----------APFLIHQESDVIVRAIRD 163
Query: 426 YFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSK 485
Y + ++++DSP+ + + +++ + PD +RV+LY +PLF + IE +I + +
Sbjct: 164 YLRRDIGEILIDSPKVFEKAKEHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQR 223
Query: 486 RVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDI 545
V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL AA +IAR+LRLRD+
Sbjct: 224 EVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNLEAADEIARQLRLRDL 281
Query: 546 GGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFM 605
GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL+E++R+R+ PS+
Sbjct: 282 GGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGES 341
Query: 606 ISEPCTCCQGTGRV---EALETSFSKIEQE 632
C CQGTG+V E+L S ++ +E
Sbjct: 342 SHHICPRCQGTGKVRDNESLSLSILRLIEE 371
>gi|421263733|ref|ZP_15714760.1| ribonuclease E [Pasteurella multocida subsp. multocida str. P52VAC]
gi|401689182|gb|EJS84663.1| ribonuclease E [Pasteurella multocida subsp. multocida str. P52VAC]
Length = 1004
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 229/419 (54%), Gaps = 41/419 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG++ E+L S ++ +E
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEE 428
>gi|395784227|ref|ZP_10464066.1| rne/Rng family ribonuclease [Bartonella melophagi K-2C]
gi|395423982|gb|EJF90170.1| rne/Rng family ribonuclease [Bartonella melophagi K-2C]
Length = 866
Score = 241 bits (616), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 176/579 (30%), Positives = 289/579 (49%), Gaps = 55/579 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A EE A +N + +D+
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL--------ALLEEEEKAAIDENQA-----DDLV 107
Query: 194 EADSQDDLVQFEHNDDEEH-----DGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDH 248
E Q++ + + H D ++ +SE + + +G + DG D
Sbjct: 108 EEIKQNEKGSRKTKKSKNHSVLSVDSENNIISESIASDDGEEVLDGNVSDD--------- 158
Query: 249 HLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGT 308
D E G + E+P T K K +++ ++VQV+KE G
Sbjct: 159 --DIEMVGAEDALEELP----------TYQRKPVRQYKIQEVIKRRQILLVQVIKEERGN 206
Query: 309 KGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRT 365
KG LT Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT
Sbjct: 207 KGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRT 266
Query: 366 VAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQD 425
A + E+++D E L+ W+ + ++ L + P L++ ++D
Sbjct: 267 AGANRTKVEIKRDYEYLMRLWETV----RTLTLKS------TAPYLVYEEGNLIKRSIRD 316
Query: 426 YFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSK 485
+N+ + +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML
Sbjct: 317 LYNKDINEILVSGDKGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNNIEAQLDKMLQP 376
Query: 486 RVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDI 545
+V L +GG LVI QTEALV+IDVN G H S EK L NL AA++IAR+LRLRD+
Sbjct: 377 QVALKSGGYLVINQTEALVAIDVNSGRSTKEH--SVEKTALQTNLEAAEEIARQLRLRDL 434
Query: 546 GGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFM 605
G+IV+DFIDM ++ N +LV +++K ++ DR+ ++V +S GLME++R+R+R SV
Sbjct: 435 AGLIVIDFIDMLENRNIKLVEKKLKDCLKNDRARIQVGRISHFGLMEMSRQRIRVSVLES 494
Query: 606 ISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKS-YN 643
+PC C GTG V + + + + I + L+S S YN
Sbjct: 495 TMQPCPHCAGTGHVRSESSIALHVMRSIEKYLLSNSQYN 533
>gi|332306495|ref|YP_004434346.1| ribonuclease, Rne/Rng family [Glaciecola sp. 4H-3-7+YE-5]
gi|332173824|gb|AEE23078.1| ribonuclease, Rne/Rng family [Glaciecola sp. 4H-3-7+YE-5]
Length = 1087
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 148/404 (36%), Positives = 218/404 (53%), Gaps = 30/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 40 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A S
Sbjct: 146 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD +RV
Sbjct: 203 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFANRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 256 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 314 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDRARV 373
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++ +SR GL+E++R+R+RPS+ C C G G V E+
Sbjct: 374 QLGRISRFGLLEMSRQRLRPSLGDSAHNVCPRCSGHGTVRGTES 417
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 64 RHGFLPLKEIARTY-FP 79
>gi|283455282|ref|YP_003359846.1| ribonuclease G [Bifidobacterium dentium Bd1]
gi|283101916|gb|ADB09022.1| rne Ribonuclease G [Bifidobacterium dentium Bd1]
Length = 926
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 201/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 533 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 592
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I + DE + G
Sbjct: 593 GIVSKIAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERI-------SAKRDEFLHGKR 645
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 646 PKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRIEEYLDTMAPDLKDKLEKWDPAEH 705
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 706 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 764
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 765 VTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 824
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 825 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 857
Score = 42.4 bits (98), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 459 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 512
>gi|378773855|ref|YP_005176098.1| ribonuclease E [Pasteurella multocida 36950]
gi|356596403|gb|AET15129.1| ribonuclease E [Pasteurella multocida 36950]
Length = 1006
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 130/347 (37%), Positives = 208/347 (59%), Gaps = 17/347 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S +
Sbjct: 154 ALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRS----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDFIHRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
GL+E++R+R+ PS+ C CQGTG++ E+L S ++ +E
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEE 428
>gi|260912463|ref|ZP_05919000.1| ribonuclease G [Prevotella sp. oral taxon 472 str. F0295]
gi|260633435|gb|EEX51588.1| ribonuclease G [Prevotella sp. oral taxon 472 str. F0295]
Length = 524
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 152/455 (33%), Positives = 245/455 (53%), Gaps = 25/455 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + + + +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGFERDAFLHYLD----LGSQFDSYAKYLKQVQSDRKKLYPFAK-- 99
Query: 279 SKHTPGEKTWLQVQ----KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ P K VQ G +V+VQ+VKE + TKGP LT R+ ILI D++
Sbjct: 100 ASRLPDLKKDGSVQTTLTSGQEVLVQIVKEPISTKGPRLTCELSFAGRYLILIPFNDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L W+ +E
Sbjct: 160 VSSKIKSGEERARLKQLIHSIKPKNCGVIVRTVAEGKRVAELDAELKTLTKYWEEAIEKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ + P L+ + +++++D FN + + V+ + EV Y+ IA
Sbjct: 220 QKSQ---------KRPHLVFEETSRAVALLRDLFNPTYENIYVNDEDVFKEVRHYVSMIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
PD D V+LY ++P+FD FNI ++I + K V +G L+IE TEAL +DVN G+
Sbjct: 271 PDKVDIVKLYSGKVPIFDNFNITKQIKSSFGKAVNYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A L+VNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 TRSEKGQEANA-LEVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEI 633
++DR+ + LS+ GLM+ITR+RVRP++ + E C C G G++++ ++E++I
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDLSVDETCPTCFGKGKIKSSILFTDQLERKI 449
Query: 634 SRLL----VSKSYNQSTFYFIRHIPKRRKHLKLEY 664
RL+ V K Y Y +I K LK ++
Sbjct: 450 DRLVNKIGVKKFYLHVHPYVAAYINKGFVSLKRQW 484
Score = 42.0 bits (97), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+KLVE E + + +VY+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKKLVEYQSETREVSFSVGNVYVAKVKKLMPGLNACFVDVGFERDAFL---HY 70
>gi|418469069|ref|ZP_13039758.1| hypothetical protein SMCF_2688, partial [Streptomyces coelicoflavus
ZG0656]
gi|371550328|gb|EHN77786.1| hypothetical protein SMCF_2688, partial [Streptomyces coelicoflavus
ZG0656]
Length = 690
Score = 241 bits (616), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 198/327 (60%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 287 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 346
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK + A P
Sbjct: 347 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKGGSAGA--------PT 398
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 399 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAPDLAERLSKWTSEVDVF 458
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 459 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 517
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 518 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 577
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 578 VQMTRKRVGQGLLESFSETCVHCNGRG 604
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 211 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 264
>gi|386833840|ref|YP_006239154.1| ribonuclease, Rne/Rng family protein [Pasteurella multocida subsp.
multocida str. 3480]
gi|385200540|gb|AFI45395.1| ribonuclease, Rne/Rng family protein [Pasteurella multocida subsp.
multocida str. 3480]
Length = 1004
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 229/419 (54%), Gaps = 41/419 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 93 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK +L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERLELKDALSSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 IHRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG++ E+L S ++ +E
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEE 428
>gi|294812601|ref|ZP_06771244.1| ribonuclease, Rne/Rng family [Streptomyces clavuligerus ATCC 27064]
gi|294325200|gb|EFG06843.1| ribonuclease, Rne/Rng family [Streptomyces clavuligerus ATCC 27064]
Length = 1456
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 200/333 (60%), Gaps = 11/333 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 880 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 939
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L + W +I + AKS G+ P
Sbjct: 940 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKS----------GSAPT 989
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 990 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSEVDVF 1049
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 1050 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 1108
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1109 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 1168
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALE 623
+++TRKRV + SE C C G G + +E
Sbjct: 1169 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 1201
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 783 FLARREAVERVMVVRQAGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 841
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 842 MEAAFVDIGKGRNAVL 857
>gi|359397137|ref|ZP_09190187.1| Ribonuclease E [Halomonas boliviensis LC1]
gi|357968931|gb|EHJ91380.1| Ribonuclease E [Halomonas boliviensis LC1]
Length = 1120
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 212/385 (55%), Gaps = 30/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ D H GF P K S KD P K L+ +G +
Sbjct: 51 EAAFVDYG-ADRH------GFLPLK-------EISREYFVKDVSGRPSIKEVLK--EGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G ER++LK + +
Sbjct: 95 VIVQVDKEERGNKGAALTTFVSLAGRFLVLMPNNPRAGGISRRIEGDERSQLKDAMGQLT 154
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ GL +RT G + EELQ DL+ L+ W++I E + P L++R
Sbjct: 155 VPDKMGLIVRTAGIGRNPEELQWDLDYLVQVWESIT----------TEAAKRPAPFLIYR 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DSP + E ++++ + P +++LY +PLF +F
Sbjct: 205 ESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALAFIRQVMPSYQQKIKLYADEVPLFSRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L N AA
Sbjct: 265 IESQIETAYQREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQTNSEAAD 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N+R V ++ A++ DR+ V++ +SR GLME++
Sbjct: 323 EIARQLRLRDIGGLVVIDFIDMGPARNQREVENRMRDALKLDRARVQIGRISRFGLMEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+RPS+ C C G G +
Sbjct: 383 RQRLRPSLGETSGVVCPRCNGQGTI 407
>gi|167623697|ref|YP_001673991.1| ribonuclease [Shewanella halifaxensis HAW-EB4]
gi|167353719|gb|ABZ76332.1| ribonuclease, Rne/Rng family [Shewanella halifaxensis HAW-EB4]
Length = 1099
Score = 241 bits (615), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 220/404 (54%), Gaps = 30/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + P+G +
Sbjct: 50 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIAREYFPKGY-SFQGR 97
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 98 PSIKEV--IKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 155
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L+ P+G GL +RT G EL+ DL+ L W I E A+SA
Sbjct: 156 DERTELKAALAELEVPQGMGLIVRTAGVGKDPAELKWDLKVLQHHWAAIKEAAESAP--- 212
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY V ++++D PR Y + ++ + PD +R+
Sbjct: 213 -------APFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVRPDFVERI 265
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ YD +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 266 KRYDAEVPLFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 323
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V + ++ AV DR+ V
Sbjct: 324 IEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHHDRARV 383
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++ +SR GLME++R+R+RPS+ + C C G G + E+
Sbjct: 384 QLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTES 427
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 66 SLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVP 125
+ I K+ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P
Sbjct: 2 TFIKKNYVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVEP 61
Query: 126 NMGGAFVNIGNSRPSLMDIKHYREPFIFP 154
++ AFV+ G R + +K + FP
Sbjct: 62 SLEAAFVDYGAERHGFLPLKEIAREY-FP 89
>gi|92111361|gb|ABE73477.1| putative ribonuclease E [Photobacterium angustum S14]
Length = 1078
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 147/404 (36%), Positives = 224/404 (55%), Gaps = 37/404 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDD---SHTSHPQGTKDSKHTPGEKTWLQVQK 293
EA F D+ E +GF P K EV D ++ S+ QG + K +++
Sbjct: 51 EAAFVDY-------GAERHGFLPLK-EVAKDYFPANYSY-QGRPNIKEV--------LKE 93
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK
Sbjct: 94 GQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALS 153
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
TL P+G GL +RT G S EEL+ DL LL+ W + E A S + P L
Sbjct: 154 TLDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWNAVKEAADSQS----------APFL 203
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ ++DY + ++++DSP+ + +++ + PD RV+ Y+ +PLF
Sbjct: 204 IHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPDFLSRVKRYEGEVPLFS 263
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+ IE +I++ + V LP+GGS+VI+ TEAL SID+N G E+ L NL
Sbjct: 264 HYQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARAT--KGGDIEETALQTNLE 321
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+
Sbjct: 322 AADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLL 381
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
E++R+R+ PS+ C C GTG V E+L S ++ +E
Sbjct: 382 EMSRQRLSPSLAEASHHVCPRCSGTGVVRDNESLSLSIPRLIEE 425
Score = 38.9 bits (89), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 61 RHGFLPLKEVAKDY-FP 76
>gi|406596528|ref|YP_006747658.1| RNase E [Alteromonas macleodii ATCC 27126]
gi|406373849|gb|AFS37104.1| RNase E [Alteromonas macleodii ATCC 27126]
Length = 1132
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 149/420 (35%), Positives = 229/420 (54%), Gaps = 32/420 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T P+G K + P K +++G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIARTYFPKGYK-FEGRPNIKDV--IKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK ++K
Sbjct: 100 VIVQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLD 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEG GL +RT G S EEL+ DL+ LL+ W+ I A+ E P L+H+
Sbjct: 160 LPEGMGLIVRTAGVGKSYEELEWDLKVLLTHWEAISSVAE----------EREAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++D Y + ++Q + PD +RV+LY +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFANRVKLYRGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+RPS+ C C G G + E+ + I R+L +S ++T +P
Sbjct: 388 RQRLRPSLGESAHHVCPRCSGHGTIRGTES----LALSILRILEEESIKENTGQIEAQLP 443
>gi|354603742|ref|ZP_09021736.1| hypothetical protein HMPREF9450_00651 [Alistipes indistinctus YIT
12060]
gi|353348667|gb|EHB92938.1| hypothetical protein HMPREF9450_00651 [Alistipes indistinctus YIT
12060]
Length = 514
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 133/346 (38%), Positives = 202/346 (58%), Gaps = 12/346 (3%)
Query: 290 QVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLK 348
+ G ++VQV KE + TKGP LT+ L R +LI +I +S+KI + ER RLK
Sbjct: 114 HIASGQTILVQVAKEAISTKGPRLTSDISLAGRNVVLIPFSGKISISQKIRSNEERNRLK 173
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
IA + P +G+ IRT AAGH E++++D+ L+ W+ ME+ K +
Sbjct: 174 KIASGVLPNNYGVIIRTAAAGHPAEDVEQDILALVHKWEKAMENLK----------QQNA 223
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+ M +T ++++D N + +D TY EV Y++ I P+ V+LY +P
Sbjct: 224 PSLVLGEMNRTTTMIRDLLNGSFSNIYIDDQATYEEVRDYIRTIVPEKEKIVKLYKGNVP 283
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+FD F++ ++I ++ +K V L G L+IE+TEAL +DVN G+ +E+ +DV
Sbjct: 284 IFDNFDVSKQIMSLFAKYVSLRKGAYLIIERTEALHVVDVNSGNRA-KVDDDQERTAMDV 342
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NLAAA +IAR+LRLRD+GGIIV+DFID+ N+ + EE++K + DR+ + LS+
Sbjct: 343 NLAAAAEIARQLRLRDMGGIIVIDFIDLHKSENRNALVEEMRKLMAADRAKHTILPLSKF 402
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEIS 634
GLM+ITR+RVRP + E C C GTG V +IE +I+
Sbjct: 403 GLMQITRQRVRPETQVDMREVCPACHGTGTVTPAALLDEQIENQIA 448
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+ ED++LVEL E +S +Y+G V K++P + AFVN+G+ + + HY
Sbjct: 16 IALFEDKQLVELTKEQSRSGYAVGDIYMGKVKKIMPGLNAAFVNVGHEKDGFI---HY 70
>gi|254392430|ref|ZP_05007611.1| hypothetical protein SSCG_04938 [Streptomyces clavuligerus ATCC
27064]
gi|197706098|gb|EDY51910.1| hypothetical protein SSCG_04938 [Streptomyces clavuligerus ATCC
27064]
Length = 1336
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 200/333 (60%), Gaps = 11/333 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 814 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 873
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L + W +I + AKS G+ P
Sbjct: 874 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWADIQQKAKS----------GSAPT 923
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 924 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLTRWTSEVDVF 983
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 984 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 1042
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1043 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 1102
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALE 623
+++TRKRV + SE C C G G + +E
Sbjct: 1103 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 1135
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 717 FLARREAVERVMVVRQAGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 775
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 776 MEAAFVDIGKGRNAVL 791
>gi|410641165|ref|ZP_11351688.1| ribonuclease E [Glaciecola chathamensis S18K6]
gi|410139292|dbj|GAC09875.1| ribonuclease E [Glaciecola chathamensis S18K6]
Length = 1084
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 148/404 (36%), Positives = 218/404 (53%), Gaps = 30/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 85 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A S
Sbjct: 143 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD +RV
Sbjct: 200 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFANRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 253 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDRARV 370
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++ +SR GL+E++R+R+RPS+ C C G G V E+
Sbjct: 371 QLGRISRFGLLEMSRQRLRPSLGDSAHNVCPRCSGHGTVRGTES 414
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|86147923|ref|ZP_01066227.1| ribonuclease E [Vibrio sp. MED222]
gi|85834248|gb|EAQ52402.1| ribonuclease E [Vibrio sp. MED222]
Length = 1041
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 215/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLR--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|218709010|ref|YP_002416631.1| ribonuclease E [Vibrio splendidus LGP32]
gi|218322029|emb|CAV18067.1| ribonuclease E [Vibrio splendidus LGP32]
Length = 1041
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 215/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLR--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|378696596|ref|YP_005178554.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
degradosome binding protein [Haemophilus influenzae
10810]
gi|301169115|emb|CBW28712.1| fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA
degradosome binding protein [Haemophilus influenzae
10810]
Length = 932
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 215/389 (55%), Gaps = 36/389 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 93 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 153 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 203 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 380
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 381 LEMSRQRLSPSLGESSHHICPRCQGTGKV 409
>gi|388257069|ref|ZP_10134249.1| ribonuclease, Rne/Rng family protein [Cellvibrio sp. BR]
gi|387939273|gb|EIK45824.1| ribonuclease, Rne/Rng family protein [Cellvibrio sp. BR]
Length = 939
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 215/385 (55%), Gaps = 27/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K E+ + T +P G D + K +++GT+
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EISREYFTKNP-GDSDGRI----KIKDVLKEGTE 100
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L R+ +L+ + R G +SR+I G +R LK + +
Sbjct: 101 VIVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEDRAELKDALGEVE 160
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P G G+ IRT G S EELQ DL LL W++I AK++ P L +
Sbjct: 161 VPNGMGVIIRTAGVGRSSEELQWDLNYLLQLWESIATAAKTSP----------APAFLFQ 210
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + V +++VD+ + ++Q + P+ +V+LY IPLF+++
Sbjct: 211 ESNVIIRAIRDYLRQDVGEVIVDNQEAFDLAAGFIQQVMPNYRSKVKLYKDDIPLFNRYQ 270
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALV+ID+N G E+ L NL AA
Sbjct: 271 IESQIETAFQREVKLPSGGSIVIDATEALVAIDINSSRAT--KGGDIEETALQTNLEAAD 328
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG+IV+DFIDM N+R V V+ A+ DR+ V++ +SR GLME++
Sbjct: 329 EIARQLRLRDMGGLIVIDFIDMQPVRNQREVENRVRDALMMDRARVQIGRISRFGLMEMS 388
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+RPS+ S+ C C G G +
Sbjct: 389 RQRLRPSLGETHSKICPRCDGVGSI 413
>gi|419839427|ref|ZP_14362834.1| ribonuclease E [Haemophilus haemolyticus HK386]
gi|386909287|gb|EIJ73962.1| ribonuclease E [Haemophilus haemolyticus HK386]
Length = 934
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 146/419 (34%), Positives = 228/419 (54%), Gaps = 41/419 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 37 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 89
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR
Sbjct: 90 I-----------LSEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISR 138
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK L PEG GL +RT G S EELQ DL+ LL W+ I + +++
Sbjct: 139 RIEGDERTELKEALSLLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNR 198
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 199 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDF 248
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 249 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 306
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +D
Sbjct: 307 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQD 366
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG+V E+L S ++ +E
Sbjct: 367 RARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLIEE 425
>gi|386313352|ref|YP_006009517.1| ribonuclease, Rne/Rng family [Shewanella putrefaciens 200]
gi|319425977|gb|ADV54051.1| ribonuclease, Rne/Rng family [Shewanella putrefaciens 200]
Length = 1126
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 196/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A++ +GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEAAQT---------KGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHISLVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 400 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES 435
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|410646394|ref|ZP_11356845.1| ribonuclease E [Glaciecola agarilytica NO2]
gi|410134000|dbj|GAC05244.1| ribonuclease E [Glaciecola agarilytica NO2]
Length = 1084
Score = 241 bits (615), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 148/404 (36%), Positives = 218/404 (53%), Gaps = 30/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 85 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A S
Sbjct: 143 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD +RV
Sbjct: 200 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFANRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 253 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRHDRARV 370
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++ +SR GL+E++R+R+RPS+ C C G G V E+
Sbjct: 371 QLGRISRFGLLEMSRQRLRPSLGDSAHNVCPRCSGHGTVRGTES 414
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|120599253|ref|YP_963827.1| ribonuclease [Shewanella sp. W3-18-1]
gi|146292673|ref|YP_001183097.1| ribonuclease [Shewanella putrefaciens CN-32]
gi|120559346|gb|ABM25273.1| RNAse E [Shewanella sp. W3-18-1]
gi|145564363|gb|ABP75298.1| RNAse E [Shewanella putrefaciens CN-32]
Length = 1128
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 196/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A++ +GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEAAQT---------KGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHISLVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 400 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES 435
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|359427779|ref|ZP_09218824.1| ribonuclease E [Acinetobacter sp. NBRC 100985]
gi|358236846|dbj|GAB00363.1| ribonuclease E [Acinetobacter sp. NBRC 100985]
Length = 1127
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 102 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 161
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 162 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQSSASS----------GPS 211
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 212 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 271
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 272 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 329
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 330 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 389
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 390 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 425
>gi|383645441|ref|ZP_09957847.1| hypothetical protein SchaN1_22475 [Streptomyces chartreusis NRRL
12338]
Length = 1382
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 197/327 (60%), Gaps = 10/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 706 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 765
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L W++I + AK+ G P
Sbjct: 766 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEDIQKKAKNG---------GNAPT 816
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R++ + + +F
Sbjct: 817 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWQTIHGYVSHVAPDLAERLQKWTSEVDVF 876
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 877 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 935
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 936 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 995
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 996 VQMTRKRVGQGLLESFSETCVHCNGRG 1022
Score = 42.4 bits (98), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 630 QIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 683
>gi|340352449|ref|ZP_08675321.1| ribonuclease G [Prevotella pallens ATCC 700821]
gi|339613910|gb|EGQ18630.1| ribonuclease G [Prevotella pallens ATCC 700821]
Length = 523
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/453 (32%), Positives = 253/453 (55%), Gaps = 22/453 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + N F +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSFAKYLKQVQSDRKKLYPIQKAS 101
Query: 279 SKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
+ + + +Q +Q G +V+VQ+VKE + TKGP LT R+ +LI D++ VS
Sbjct: 102 KQPDLQKDSSIQNILQVGQEVMVQIVKEPISTKGPRLTGDISFAGRYIVLIPFSDKVNVS 161
Query: 337 RKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
KI +G ER RLK + ++++P+ FG+ +RTVA G + EL +++ L W++
Sbjct: 162 TKIKSGEERARLKQLIQSIRPKNFGVIVRTVAQGKRVAELDAEMKLLYGRWQD------- 214
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
A+ + ++ P L+ G+ + +++D FN + + V+ + V +Y+ IAP+
Sbjct: 215 -AITKVQKIQER-PQLIFEEKGRAVGMLRDLFNPTYENIYVNDEEICNAVKNYITLIAPE 272
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
+ V+ Y ++P+FD FN+ ++I + K + +G +++E TEA+ +DVN G+
Sbjct: 273 KANIVKKYTGKVPIFDNFNVTKQIKSSFGKTINYGHGCYIIVEHTEAMHVVDVNSGNRT- 331
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
+E+ LD NL AA +IAR+LRLRD+GGIIV+DFIDM +++++YE + KA+++
Sbjct: 332 -KEKEQEQNALDTNLGAADEIARQLRLRDMGGIIVIDFIDMNLAEDRQMLYERMCKAMQK 390
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEA--LETSF--SKIEQ 631
DR+ + LS+ GLM+ITR+RVRP++ ++E C C GTG++ + L T KIEQ
Sbjct: 391 DRARHNILPLSKFGLMQITRQRVRPAMDVDVAEDCPTCFGTGKIRSSLLFTDLLERKIEQ 450
Query: 632 EISRLLVSKSYNQSTFYFIRHIPKRRKHLKLEY 664
++++ + K Y Y +I K +K+ +
Sbjct: 451 LVTKVGIKKFYLHVHPYVAAYINKGLVSIKMRW 483
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP ++N ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQCEPREANFSVGNIYIAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|260773155|ref|ZP_05882071.1| ribonuclease E [Vibrio metschnikovii CIP 69.14]
gi|260612294|gb|EEX37497.1| ribonuclease E [Vibrio metschnikovii CIP 69.14]
Length = 1044
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/383 (37%), Positives = 212/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + S P+G + P K L+ +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EISRDYFPEGYT-YQGRPSIKEVLR--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL- 354
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTDLKTALSTLV 156
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + ++S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQASES----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ I PD RV+ YD +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLIRPDFASRVKKYDGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCSGTG 407
>gi|114047967|ref|YP_738517.1| RNAse E [Shewanella sp. MR-7]
gi|113889409|gb|ABI43460.1| RNAse E [Shewanella sp. MR-7]
Length = 1095
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 193/336 (57%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A+S
Sbjct: 154 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEAAQS----------RNA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y E ++ + PD +RV+LY+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHIALVRPDFVERVKLYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 382 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES 417
>gi|406038343|ref|ZP_11045698.1| ribonuclease E [Acinetobacter ursingii DSM 16037 = CIP 107286]
Length = 1162
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 119 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 178
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I A S G
Sbjct: 179 MLASLNIPRGMSVIVRTAGIGRSQEELQLDLQHLLDLWNQIQNTANS----------GPS 228
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 229 PMLVHQEAGVVTRAIRDYLRDDVSEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 288
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 289 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 346
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 347 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 406
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 407 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 442
>gi|386829017|ref|ZP_10116124.1| ribonuclease, Rne/Rng family [Beggiatoa alba B18LD]
gi|386429901|gb|EIJ43729.1| ribonuclease, Rne/Rng family [Beggiatoa alba B18LD]
Length = 784
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 216/366 (59%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G +R+ +
Sbjct: 120 LKEGQELIVQVDKEERGNKGAALTTFISLAGRYVVLMPNNPRAGGVSRRIEGDDRSEARE 179
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ TL P+G G+ +RT G + EEL+ DLE LL W I E ++ + +
Sbjct: 180 VLSTLDIPDGMGVILRTAGMGKTAEELKWDLEYLLGLWHAIEESSR----------DRSA 229
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DYF E + +++VD Y E +++ + P +V+LY+ +P
Sbjct: 230 PFLIYQESNVIIRAIRDYFREDINEILVDDEEIYAEAMDFMRQVMPQYLTKVKLYNDNVP 289
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + + V LP+GG++V++ TEAL+SID+N G E+ L+
Sbjct: 290 LFTRYQIESQIESAFQREVRLPSGGAIVLDHTEALLSIDINSSKAT--KGGDIEETALNT 347
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL A ++IAR+LRLRD+GG+IV+DFIDM N+R V +K+A++ DR+ V+V +SR
Sbjct: 348 NLEAVEEIARQLRLRDLGGLIVIDFIDMMSHKNQREVESRLKEALKMDRARVQVGRISRF 407
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ C C G G++ ++E+ + I RL+ ++ + T
Sbjct: 408 GLLEMSRQRLRPSLGESSHIMCPRCNGQGKIRSVES----LSLAILRLIEEEAMKERTVK 463
Query: 649 FIRHIP 654
+ +P
Sbjct: 464 VVAQVP 469
>gi|148977657|ref|ZP_01814233.1| ribonuclease E [Vibrionales bacterium SWAT-3]
gi|145963172|gb|EDK28440.1| ribonuclease E [Vibrionales bacterium SWAT-3]
Length = 1053
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 215/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLK--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|332141129|ref|YP_004426867.1| RNase E [Alteromonas macleodii str. 'Deep ecotype']
gi|410861441|ref|YP_006976675.1| RNase E [Alteromonas macleodii AltDE1]
gi|327551151|gb|AEA97869.1| RNase E [Alteromonas macleodii str. 'Deep ecotype']
gi|410818703|gb|AFV85320.1| RNase E [Alteromonas macleodii AltDE1]
Length = 1134
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/420 (35%), Positives = 229/420 (54%), Gaps = 32/420 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T P+G K + P K +++G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIARTYFPKGYK-FEGRPNIKDV--IKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK ++K
Sbjct: 100 VIIQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLD 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL+ LL W+ I E A EG E P L+H+
Sbjct: 160 LPDGMGLIVRTAGVGKSYEELEWDLKVLLKHWEAISEVA--------EGRE--APFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++D Y + ++Q + PD RV+LY +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFASRVKLYRGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+RPS+ C C G G + E+ + I R+L +S ++T +P
Sbjct: 388 RQRLRPSLGESAHHVCPRCSGHGTIRGTES----LALSILRILEEESIKENTGQIEAQLP 443
>gi|110640055|ref|YP_680265.1| ribonuclease G [Cytophaga hutchinsonii ATCC 33406]
gi|110282736|gb|ABG60922.1| ribonuclease G [Cytophaga hutchinsonii ATCC 33406]
Length = 535
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/366 (37%), Positives = 216/366 (59%), Gaps = 20/366 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKV 349
++KG ++VQVVKE + TKGP L+ L R+ +L+ + + VS+KIT E R RL
Sbjct: 116 LEKGNPILVQVVKEPISTKGPRLSCEISLAGRYLVLVPFSNVVSVSKKITDKEERQRLVR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKN---IMEHAKSAALAADEGVEG 406
+ +++PE FG+ IRTVA+ + EL KDL L+ TW++ I++ A+ L E
Sbjct: 176 LISSIRPENFGVIIRTVASNKEVAELDKDLRNLVKTWEDGIAILKKARPRDLIIGE---- 231
Query: 407 AVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR 466
+ +T SI++D NE + VD+ Y ++ SY+++IAPD V+L+ +
Sbjct: 232 ---------LDRTSSILRDMLNESFDSINVDTKELYDDLRSYIKNIAPDKERLVKLHQGK 282
Query: 467 IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
+F+ +E+++ + K V L GG L+IE TEAL IDVN G+ + +S+E+ L
Sbjct: 283 TKMFESTGVEKQLKTLFGKSVSLSGGGYLIIEHTEALHVIDVNSGNKS-NNETSQEETAL 341
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL A +++AR+LRLRD+GGIIVVDFIDM + N++++YE +K ++ DRS + LS
Sbjct: 342 HTNLEACREVARQLRLRDMGGIIVVDFIDMKNLDNRKVIYERMKLEMKDDRSKNVILPLS 401
Query: 587 RHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
+ GLM+ITR+RVRP + E C C GTG++ A +IE ++ ++ + N+
Sbjct: 402 KFGLMQITRERVRPQTNLITMEVCPTCNGTGKISASIAITDQIEHKLDYIITKQ--NEKN 459
Query: 647 FYFIRH 652
+ H
Sbjct: 460 ITLVLH 465
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 79 LINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSR 138
L SS + RIA++++++LVE E +YLG V K+VP + AF+++G +
Sbjct: 5 LFISSSQSGDRIALIQEKRLVEYQFEDHTRKFNVGDIYLGTVRKVVPGLNAAFIDVGYEK 64
Query: 139 PSLMDIKHYREPFIFPPFRCRTK--KQEVNGSASAAL 173
+ + HY + + P + TK K + +++ AL
Sbjct: 65 DAFL---HYFD--LGPKIKSLTKFTKNAITSASTPAL 96
>gi|373467463|ref|ZP_09558760.1| S1 RNA binding domain protein [Haemophilus sp. oral taxon 851 str.
F0397]
gi|371758664|gb|EHO47427.1| S1 RNA binding domain protein [Haemophilus sp. oral taxon 851 str.
F0397]
Length = 937
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/405 (34%), Positives = 224/405 (55%), Gaps = 39/405 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LS 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G +RT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDDRTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L PEG GL +RT G S EELQ DL+ LL W+ I + +++ P
Sbjct: 156 SSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQNRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKVFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
+E++R+R+ PS+ C CQGTG+V E+L S ++ +E
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLSLSILRLIEE 428
>gi|145628780|ref|ZP_01784580.1| ribonuclease E [Haemophilus influenzae 22.1-21]
gi|144979250|gb|EDJ88936.1| ribonuclease E [Haemophilus influenzae 22.1-21]
Length = 935
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 197/329 (59%), Gaps = 14/329 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|410617785|ref|ZP_11328750.1| ribonuclease E [Glaciecola polaris LMG 21857]
gi|410162916|dbj|GAC32888.1| ribonuclease E [Glaciecola polaris LMG 21857]
Length = 1049
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 147/404 (36%), Positives = 217/404 (53%), Gaps = 30/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + + T PQG K +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLK----EIARTYFPQGYK-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 85 PNIKDV--IKEGQEVIIQIDKEERGQKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G S EELQ DL LL+ W I E A S
Sbjct: 143 DERTDLKQALSNLTLPDGMGLIVRTAGVGKSAEELQWDLSVLLTHWTAISEAADSRP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D Y + +++ + PD RV
Sbjct: 200 -------APFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQAMKHIELVRPDFASRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N GS
Sbjct: 253 KLYRGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA ++AR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLKDAVRHDRARV 370
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++ +SR GL+E++R+R+RPS+ C C G G V E+
Sbjct: 371 QLGRISRFGLLEMSRQRLRPSLGDSAHNVCPRCSGHGTVRGTES 414
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|417948147|ref|ZP_12591295.1| ribonuclease E [Vibrio splendidus ATCC 33789]
gi|342810177|gb|EGU45270.1| ribonuclease E [Vibrio splendidus ATCC 33789]
Length = 1048
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 215/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLK--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 385 RQRLSPSLAEASHHICPRCTGTGVV 409
>gi|411009295|ref|ZP_11385624.1| ribonuclease E [Aeromonas aquariorum AAK1]
Length = 1025
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/385 (37%), Positives = 219/385 (56%), Gaps = 32/385 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 51 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 94
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 95 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 154
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL LL+ W +I H S + +A P+L+
Sbjct: 155 LTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQSRSA--------PVLI 204
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + S+++ + PD +RV+LY + LF+
Sbjct: 205 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKSHIELVRPDFLNRVKLYKGEVALFNH 264
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 265 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 322
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 323 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 382
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTG 617
++R+R+RPS+ S C CQG G
Sbjct: 383 MSRQRLRPSLNESSSHICPRCQGQG 407
>gi|313673337|ref|YP_004051448.1| rnase g [Calditerrivibrio nitroreducens DSM 19672]
gi|312940093|gb|ADR19285.1| RNAse G [Calditerrivibrio nitroreducens DSM 19672]
Length = 505
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 151/419 (36%), Positives = 237/419 (56%), Gaps = 21/419 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +VL + + ID G A F GD ++D +S F + + + G K
Sbjct: 46 VVKVLPGMQSAFIDIGHERAAF--LHAGDLYID-DSENFSLLEDRIAEVEDLDLENGNK- 101
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRK 338
+ P E +Q+G ++IVQV KE +G KG LT + + R+ +L+ S + +G+SRK
Sbjct: 102 -VYVPIEDL---IQEGQEIIVQVAKEPIGQKGARLTTHITIPGRYLVLMPSYNHVGISRK 157
Query: 339 ITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAA 397
I ER RLK I ++P GL RTV S E+L+ DL LL TW+ + +K
Sbjct: 158 IEDDGERERLKNILLNIKPANVGLIARTVCENSSEEDLKADLNYLLKTWEKVSAKSK--- 214
Query: 398 LAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLC 457
E P L++ + V+D N++V+K++VD+ Y + S++++ +
Sbjct: 215 -------EPGAPKLIYEELDLLFRTVRDLANDEVRKIIVDTKADYLRIKSFVKEYLSNNH 267
Query: 458 DRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGH 517
+ELY+ +P+FD +NIE EI+ +L +RV L +GG +VI+QTEAL IDVN G F
Sbjct: 268 ISIELYENDMPIFDYYNIEIEISRLLERRVWLKSGGYIVIDQTEALTVIDVNTGK--FVG 325
Query: 518 GSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDR 577
+ ++ IL N+ AAK+IA ++RLR++GGII+VDFIDM + ++ V + + + +++DR
Sbjct: 326 KRNFDETILKTNIEAAKEIAWQMRLRNLGGIIIVDFIDMEKEEHREKVLQTLLQEMKKDR 385
Query: 578 SMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
+ V +S GL EITRKRV+ S+ M++EPC C G G V++ T I +EI R+
Sbjct: 386 AKASVVNISPLGLFEITRKRVQDSLNKMLTEPCPYCDGRGVVKSKLTICYDILREIRRI 444
Score = 47.8 bits (112), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
I+INS+ R+AVLE+ L E+ LE K+ ++Y G V K++P M AF++IG+
Sbjct: 5 IIINST-PNETRVAVLENNSLSEIFLERAKNKGIAGNIYKGKVVKVLPGMQSAFIDIGHE 63
Query: 138 RPSLM 142
R + +
Sbjct: 64 RAAFL 68
>gi|338997098|ref|ZP_08635803.1| ribonuclease E [Halomonas sp. TD01]
gi|338766171|gb|EGP21098.1| ribonuclease E [Halomonas sp. TD01]
Length = 1137
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 212/385 (55%), Gaps = 30/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K S KD P K L+ +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-------EISREYFIKDVSGRPSIKEVLK--EGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G +R++LK + +
Sbjct: 98 VIVQVDKEERGNKGAALTTFISLAGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLT 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ GL +RT G S EELQ DL+ L+ W++I E + + P L++R
Sbjct: 158 VPDKMGLIVRTAGIGRSPEELQWDLDYLVQVWESIT----------TEAGKRSAPFLIYR 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DSP + E +++ + P +++LY +PLF +F
Sbjct: 208 ESNVIIRAMRDYLRQDIGEVLIDSPEIHAEALGFIRQVMPSYQQKIKLYADEVPLFSRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L N AA
Sbjct: 268 IESQIETAYQREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQTNSEAAD 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N+R V ++ A++ DR+ V++ +SR GLME++
Sbjct: 326 EIARQLRLRDIGGLVVIDFIDMGPARNQREVENRMRDALKLDRARVQIGRISRFGLMEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+RPS+ C C G G +
Sbjct: 386 RQRLRPSLGETSGVVCPRCNGQGTI 410
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKH-YREPFI 152
R + +K RE FI
Sbjct: 64 RHGFLPLKEISREYFI 79
>gi|262374096|ref|ZP_06067373.1| ribonuclease E [Acinetobacter junii SH205]
gi|262311107|gb|EEY92194.1| ribonuclease E [Acinetobacter junii SH205]
Length = 1119
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILSSLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQSSASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|148825306|ref|YP_001290059.1| ribonuclease E [Haemophilus influenzae PittEE]
gi|148715466|gb|ABQ97676.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittEE]
Length = 935
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/403 (35%), Positives = 219/403 (54%), Gaps = 38/403 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P ++ PDD +D
Sbjct: 40 NIYKGTITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G +VIVQV KE G KG LT + L + + + + R G +SR
Sbjct: 93 I-----------LTEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ERT LK +L P+G GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 142 RIEGDERTELKEALSSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++DSP+ + + +++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
R+ +++S +SR GL+E++R+R+ PS+ C CQGTG+V
Sbjct: 370 RARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|372489070|ref|YP_005028635.1| ribonuclease, Rne/Rng family [Dechlorosoma suillum PS]
gi|359355623|gb|AEV26794.1| ribonuclease, Rne/Rng family [Dechlorosoma suillum PS]
Length = 920
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/424 (35%), Positives = 230/424 (54%), Gaps = 47/424 (11%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ +I EP EA F ++ E H GF P K +
Sbjct: 26 DLDIESAAKEQRKSNIYKGVITRIEPSLEACFVNYGEERH-------GFLPFK-----EV 73
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
S+ Q D++ + E +++G +VIVQV K+ G KG LT + L R+ +L+
Sbjct: 74 SRSYFQPGVDNRASIKEA----LKEGQEVIVQVEKDERGNKGAALTTFVSLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ER L+ + LQ P G L RT A G + EELQ DL LL W
Sbjct: 130 NNPRGGGVSRRVEGDERAELRDVMDQLQVPGGMSLIARTAAIGRNAEELQWDLNYLLKLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAV-----PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRT 441
E +EGA P L++ + ++DYF + ++++D+
Sbjct: 190 ---------------EAIEGAATSQSGPFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEI 234
Query: 442 YHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTE 501
+ + S++ + P +RV+LY +PLF +F IE +I + S++V LP+GG++VI+ TE
Sbjct: 235 FEQARSFMGTVMPANENRVKLYRDDVPLFSRFQIEHQIESAYSRQVNLPSGGAIVIDHTE 294
Query: 502 ALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSN 561
ALVS+DVN G G E+ L N AA +IAR+LRLRD+GG+IV+DFIDM N
Sbjct: 295 ALVSVDVNSGRST--RGQDIEETALKTNQEAADEIARQLRLRDLGGLIVIDFIDMESQKN 352
Query: 562 KRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEA 621
+R V ++ A+ DR+ V++ ++SR GLME++R+R+RP++ PC C GTG + +
Sbjct: 353 QREVENRLRDALRHDRARVQMGKISRFGLMELSRQRLRPALAETSYIPCPRCTGTGHIRS 412
Query: 622 LETS 625
E++
Sbjct: 413 TESA 416
Score = 46.2 bits (108), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 44/88 (50%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVNYGEE 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKKQEV 165
R + K + P R +E
Sbjct: 64 RHGFLPFKEVSRSYFQPGVDNRASIKEA 91
>gi|390443613|ref|ZP_10231401.1| Rne/Rng family ribonuclease [Nitritalea halalkaliphila LW7]
gi|389666216|gb|EIM77670.1| Rne/Rng family ribonuclease [Nitritalea halalkaliphila LW7]
Length = 523
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 216/383 (56%), Gaps = 20/383 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+ + +++VQVVKE + TKGP L+ + R+ +L+ + + VS+KI + ER RL
Sbjct: 116 LSRNQQILVQVVKEPISTKGPRLSCELSIAGRYLVLVPFSNTVNVSKKIRSAEERKRLVR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P FG+ IRTVA G S+ EL KDL L+ W ME A + + G
Sbjct: 176 LITSIKPSNFGVIIRTVADGQSVTELDKDLRNLVDIWDKGMEKLPKAK--NRDKIVGE-- 231
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
M SI++D NE + V+ T++++ SY++ IAP+ V+LY + L
Sbjct: 232 ------MSMASSIIRDLLNESFDAITVEEESTFNQIRSYIKTIAPEKEKIVKLYSGKAKL 285
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+ F IE++I ++ + V LP GG L+IE TEAL +DVN G+ S +E L N
Sbjct: 286 FESFGIEKQIKSLFGQTVSLPQGGYLIIEHTEALHVVDVNSGNKS-NQESDQETTALKTN 344
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L A K++AR+LRLRD+GGIIV+DFIDM NK+ +++ +K + DRS + L++ G
Sbjct: 345 LVAVKEVARQLRLRDMGGIIVIDFIDMKKADNKKAIFDAMKDEMRGDRSKHTILPLTKFG 404
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTF-- 647
LM+ITR+RVRP V + E C C GTG+++A ++E+++ + ++ + +
Sbjct: 405 LMQITRQRVRPEVNIVTKEICPACNGTGKIQASILVADRLEKDLEHIATIQNASNISIGL 464
Query: 648 ------YFIRHIPKRRKHLKLEY 664
YF + I +R L+Y
Sbjct: 465 HPYLHAYFSKGILSKRVKWFLKY 487
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148
RIA+L+D+ LVEL + + + +YLG V K+V + AF+++G + + + HY+
Sbjct: 15 RIALLKDKSLVELHADGEGNKFKVGDIYLGTVKKIVNGLNAAFIDVGYEKDAFL---HYQ 71
Query: 149 E--PFIFPPFRCRTKKQEVNGSASAALE 174
+ P I TK+ N S +L+
Sbjct: 72 DLGPQI-NSLNKYTKQLRANAKQSQSLK 98
>gi|295838917|ref|ZP_06825850.1| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces sp. SPB74]
gi|295827249|gb|EDY42405.2| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces sp. SPB74]
Length = 713
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 245 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 304
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK+ G P
Sbjct: 305 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIRKKAKT----------GNAPT 354
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV R + V Y+ +APDL R+ + + +F
Sbjct: 355 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETVHGYVSHVAPDLVGRLSRWTSEVDVF 414
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 415 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 473
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 474 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 533
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 534 VQMTRKRVGQGLLESFSETCVHCNGRG 560
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED+ LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 170 QIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 223
>gi|30995373|ref|NP_438575.2| ribonuclease E [Haemophilus influenzae Rd KW20]
gi|1173095|sp|P44443.1|RNE_HAEIN RecName: Full=Ribonuclease E; Short=RNase E
Length = 935
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 197/329 (59%), Gaps = 14/329 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|340349421|ref|ZP_08672439.1| ribonuclease G [Prevotella nigrescens ATCC 33563]
gi|339611628|gb|EGQ16449.1| ribonuclease G [Prevotella nigrescens ATCC 33563]
Length = 523
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 145/453 (32%), Positives = 250/453 (55%), Gaps = 22/453 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + N F +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSFAKYLKQVQSDRKKLYPIQKAS 101
Query: 279 SKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
+ + + +Q +Q G +V+VQ+VKE + TKGP LT R+ +LI D++ VS
Sbjct: 102 KQPDLQKDSSIQNILQVGQEVMVQIVKEPISTKGPRLTGEISFAGRYIVLIPFGDKVNVS 161
Query: 337 RKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
KI +G ER RLK + ++++P+ FG+ +RTVA G + EL +++ L W++ + +
Sbjct: 162 TKIKSGEERARLKQLIQSIRPKNFGVIVRTVAQGKRVAELDAEMKLLYGRWQDAITKVQK 221
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
+ P L+ G+ + +++D FN + + V+ + V +Y+ IAP+
Sbjct: 222 SQ---------ERPQLVFEEKGRAVGMLRDLFNPTYENIYVNDEEICNAVKNYVTLIAPE 272
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
+ V+ Y ++P+FD FN+ ++I + K + +G +++E TEA+ +DVN G+
Sbjct: 273 KANIVKKYTGKVPIFDNFNVTKQIKSSFGKTINYGHGCYIIVEHTEAMHVVDVNSGNRT- 331
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
+E+ LD NL AA +IAR+LRLRD+GGIIVVDFIDM +++++YE + KA+++
Sbjct: 332 -KEKEQEQNALDTNLGAADEIARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKAMQK 390
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEA--LETSF--SKIEQ 631
DR+ + LS+ GLM+ITR+RVRP++ ++E C C GTG++ + L T KIEQ
Sbjct: 391 DRARHNILPLSKFGLMQITRQRVRPAMDVDVAEDCPTCFGTGKIRSSLLFTDLLERKIEQ 450
Query: 632 EISRLLVSKSYNQSTFYFIRHIPKRRKHLKLEY 664
+ ++ + K Y Y +I K +K+ +
Sbjct: 451 LVEKIGIKKFYLHVHPYVAAYINKGIVSIKMRW 483
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP ++N ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQREPREANFSVGNIYIAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|1573386|gb|AAC22072.1| ribonuclease E (rne) [Haemophilus influenzae Rd KW20]
Length = 951
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 197/329 (59%), Gaps = 14/329 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 171
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 172 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 221
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 222 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 281
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 282 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 339
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 340 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 399
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 400 LEMSRQRLSPSLGESSHHICPRCQGTGKV 428
>gi|212557319|gb|ACJ29773.1| Ribonuclease E [Shewanella piezotolerans WP3]
Length = 1119
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 194/336 (57%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVIIQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G GL +RT G EL+ DL+ L W I E A+SA
Sbjct: 154 ALSELDIPQGMGLIVRTAGVGKDPAELKWDLKVLQHHWAAIKEAAESAP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y + ++ + PD +R++ YD +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVRPDFVERIKRYDAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V + ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + E+
Sbjct: 382 GLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTES 417
>gi|269125790|ref|YP_003299160.1| ribonuclease, Rne/Rng family [Thermomonospora curvata DSM 43183]
gi|268310748|gb|ACY97122.1| ribonuclease, Rne/Rng family [Thermomonospora curvata DSM 43183]
Length = 1041
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK +
Sbjct: 597 LKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPDGSMTGISRKLPDKERSRLKQV 656
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P+ G+ +RT A G + EEL D+ L + W++I + AK+A+ P
Sbjct: 657 LKKIMPDNAGVIVRTAAEGATEEELAGDIARLSAQWEHIHKQAKTAS----------APA 706
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LLH T+ +V+D FNE K+VV + V+ Y+ +AP L +R+E ++ +
Sbjct: 707 LLHGEPDLTIRVVRDIFNEDFSKLVVSGDTAWDMVSEYVGYVAPHLAERLERWESDQDVL 766
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 767 SAYRIDEQIAKALERKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGQGGNLEETVTRNNL 825
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 826 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLLECLSRDRTKHQVAEVTSLGL 885
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SEPC CC G G
Sbjct: 886 VQMTRKRVGQGLLEAFSEPCECCNGRG 912
Score = 43.5 bits (101), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
++I++ F++ + + QR IAVLED LVE ++ +VYLG V
Sbjct: 493 AVITESEFLARRESVERVMVICQRGERTQIAVLEDGVLVEHYVDRASHQSYVGNVYLGKV 552
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 553 QNVLPSMEAAFVDIGKGRNAVL 574
>gi|145218838|ref|YP_001129547.1| ribonuclease [Chlorobium phaeovibrioides DSM 265]
gi|145205002|gb|ABP36045.1| ribonuclease, Rne/Rng family [Chlorobium phaeovibrioides DSM 265]
Length = 564
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/402 (35%), Positives = 228/402 (56%), Gaps = 24/402 (5%)
Query: 259 PSKSEVPDDSHTSHPQGT-KDSKHTPGEK--TWLQVQKGT-----KVIVQVVKEGLGTKG 310
PS ++ S P + KDS+ EK ++ Q+ G ++VQV+KE + TKG
Sbjct: 116 PSGAKTVARSGGRGPSASGKDSRSEQAEKRQSYTQMIAGKLKANDSILVQVIKEPISTKG 175
Query: 311 PTLTAYPKLRSRFWILIT-SCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAA 368
LT+ + RF +L+ ++ VSR++ ER RLK + +++ PEGFG IRTVA
Sbjct: 176 SRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERARLKKLVRSMLPEGFGAIIRTVAE 235
Query: 369 GHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFN 428
L++DLE LL W I E K A P L+ + S+++D N
Sbjct: 236 MQEESLLRQDLEMLLGKWTQIEEKLKDAT----------PPQLIFKEDTIISSVLRDSLN 285
Query: 429 EKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVP 488
V ++V +SP + E +Y++ APD+ V LY ++PLF+ + I +++ ++ S++V
Sbjct: 286 SDVTEIVANSPSIHKETLNYIEWAAPDMVKNVSLYQGKLPLFEGYGIAKDVESIFSRKVW 345
Query: 489 LPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGI 548
L +GG ++IE TEA+V +DVN G + +E+ L NL AA+++ R+LRLRDIGGI
Sbjct: 346 LKSGGYIIIEHTEAMVVVDVNSGR--YAAKREQEENSLKTNLEAAREVVRQLRLRDIGGI 403
Query: 549 IVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISE 608
IVVDFIDM D N + VY+ +K + DR+ + LS G+M+ITR+R+RPS+ + +
Sbjct: 404 IVVDFIDMMDSRNSKKVYDTMKGELRNDRAKSNILPLSDFGVMQITRERIRPSLMQRMGD 463
Query: 609 PCTCCQGTGRVEALETSFSKIEQEISRLLVSKS--YNQSTFY 648
C C G+G V+A T+ ++IE+ + + + +S + Q Y
Sbjct: 464 QCPACGGSGVVQARFTTINQIERWLRKYALQQSMKFQQLDLY 505
>gi|423196669|ref|ZP_17183252.1| rne/Rng family ribonuclease [Aeromonas hydrophila SSU]
gi|404632123|gb|EKB28752.1| rne/Rng family ribonuclease [Aeromonas hydrophila SSU]
Length = 1044
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/385 (37%), Positives = 219/385 (56%), Gaps = 32/385 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL LL+ W +I H S + +A P+L+
Sbjct: 158 LTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQSRSA--------PVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D+P + S+++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKSHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTG 617
++R+R+RPS+ S C CQG G
Sbjct: 386 MSRQRLRPSLNESSSHICPRCQGQG 410
>gi|145634590|ref|ZP_01790299.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittAA]
gi|145268135|gb|EDK08130.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittAA]
Length = 935
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 197/329 (59%), Gaps = 14/329 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|260580524|ref|ZP_05848352.1| ribonuclease E [Haemophilus influenzae RdAW]
gi|260092866|gb|EEW76801.1| ribonuclease E [Haemophilus influenzae RdAW]
Length = 947
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 197/329 (59%), Gaps = 14/329 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 108 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAL 167
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 168 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 217
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 218 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 277
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 278 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 335
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 336 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 395
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 396 LEMSRQRLSPSLGESSHHICPRCQGTGKV 424
>gi|24374321|ref|NP_718364.1| ribonuclease E Rne [Shewanella oneidensis MR-1]
gi|24348868|gb|AAN55808.1| ribonuclease E Rne [Shewanella oneidensis MR-1]
Length = 1088
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 196/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A++ +GA
Sbjct: 154 AMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQHHWAAITEAAQT---------KGA- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y E ++ + PD +RV+LY+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEEAKQHIALVRPDFVERVKLYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 382 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES 417
>gi|148652236|ref|YP_001279329.1| ribonuclease [Psychrobacter sp. PRwf-1]
gi|148571320|gb|ABQ93379.1| RNAse G [Psychrobacter sp. PRwf-1]
Length = 613
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 181/597 (30%), Positives = 296/597 (49%), Gaps = 54/597 (9%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN S R+AVL++ + E+ +E ++YLG V +++P M AFV IG S
Sbjct: 5 LLINVSPME-SRVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQAAFVEIGQS 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAA--------------LEEHAVTYDND 183
R + + + R I P K E+ +A + E+ VT +
Sbjct: 64 RTAFLHVNDMRR--IARPAPTADKAPEIRHNAKQEPTVLTSMPVDRCEHIAENVVTASDT 121
Query: 184 STS--HNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFE 241
S TE EAD + E E D S+ LKN ++D+ E D
Sbjct: 122 MASVIAETEPAMEADPLSAKTEIEAGSLREKKSALADESDNLKN---DLLDNALLEIDSP 178
Query: 242 DFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQV 301
D + G + +K + P +H E ++ +G K++VQV
Sbjct: 179 DMV-------GNAITKADTKPAAVKERQIIEP-----PRH---ELIQYRLHEGQKILVQV 223
Query: 302 VKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-----RTRLKVIAKTLQP 356
K+ LGTKG LT L SR+ + + S + IG+S++I E +T L + +T+
Sbjct: 224 TKDQLGTKGARLTTNISLPSRYLVYLPSSEHIGISQRIDNEEERHRLKTELGALMQTVNL 283
Query: 357 EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAM 416
G GL RT A + +L++D+ L+ W+ I +++A + G +L+++ +
Sbjct: 284 TG-GLIARTAAERVPVAKLEEDIYYLVQLWRTIQARKEASAGS------GQSAVLIYQEL 336
Query: 417 GQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIE 476
L ++D + +K++VD Y+EV + ++ P + R+ Y PLFD +E
Sbjct: 337 SLPLRSIRDLVHPDTEKVIVDHEGMYNEVRQFAKEFVPFIYPRILPYSGEQPLFDVHRVE 396
Query: 477 EEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQI 536
E++ + L +RV L +GG L+I+QTEA+ +IDVN G F G S E + NL A I
Sbjct: 397 EDLRDALKRRVDLKSGGYLIIDQTEAMTTIDVNTGS--FVGGRSLEDTVYKTNLEATHAI 454
Query: 537 ARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRK 596
AR+LRLR++GGII++DFIDM + +K V E ++ + +D + K++++S GL+E+TRK
Sbjct: 455 ARQLRLRNLGGIIILDFIDMLEQQHKDDVLENLQYQLSQDYAKTKITQVSELGLVEMTRK 514
Query: 597 RVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQ-STFYFIRH 652
R R S+ + EPC C+G G ++ ET +I +EI R +++YN F + H
Sbjct: 515 RTRESLEQQLCEPCKTCEGKGFIKTAETVCFEIFREIMR--CARTYNSPKKFTVVAH 569
>gi|333027124|ref|ZP_08455188.1| hypothetical protein STTU_4628 [Streptomyces sp. Tu6071]
gi|332746976|gb|EGJ77417.1| hypothetical protein STTU_4628 [Streptomyces sp. Tu6071]
Length = 1349
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 620 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 679
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK+ G P
Sbjct: 680 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKT----------GNAPT 729
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV R + + Y+ +APDL R+ + + F
Sbjct: 730 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEVDAF 789
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 790 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 848
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 849 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 908
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 909 VQMTRKRVGQGLLESFSETCVHCNGRG 935
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ Q I VLED+ LVE + +S +VYLG V ++P+
Sbjct: 524 FLARREAVERVMVVREQGERTQ-IGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPS 582
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 583 MEAAFIDIGKGRNAVL 598
>gi|89073416|ref|ZP_01159940.1| Putative ribonuclease E [Photobacterium sp. SKA34]
gi|89050903|gb|EAR56377.1| Putative ribonuclease E [Photobacterium sp. SKA34]
Length = 1094
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/403 (36%), Positives = 222/403 (55%), Gaps = 35/403 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K EV D ++ QG + K +++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EVAKDYFPANYSYQGRPNIKEV--------LKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK T
Sbjct: 98 QEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALST 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L P+G GL +RT G S EEL+ DL LL+ W + E A S + P L+
Sbjct: 158 LDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWNAVKEAADSQS----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++DSP+ + +++ + PD RV+ Y+ +PLF
Sbjct: 208 HQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPDFLSRVKRYEGEVPLFSH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I++ + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 YQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
++R+R+ PS+ C C GTG V E+L S ++ +E
Sbjct: 386 MSRQRLSPSLAEASHHVCPRCSGTGVVRDNESLSLSILRLIEE 428
Score = 38.9 bits (89), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEVAKDY-FP 79
>gi|319408602|emb|CBI82257.1| ribonuclease E [Bartonella schoenbuchensis R1]
Length = 864
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 176/579 (30%), Positives = 289/579 (49%), Gaps = 55/579 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A EE A +N + +D+
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL--------ALLEEEEKAAIDENQA-----DDLV 107
Query: 194 EADSQDDLVQFEHNDDEEH-----DGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDH 248
E Q+ + + H D ++ +SE + + DDGE D + + D
Sbjct: 108 EEIKQNKKGSRKTKKSKNHSTLSVDNENNIISESIAS------DDGEEALDG-NVCDDDI 160
Query: 249 HLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGT 308
+ G + E+P T K K +++ ++VQV+KE G
Sbjct: 161 EMVGAEDAL----EELP----------TYQRKPVRQYKIQEVIKRRQILLVQVIKEERGN 206
Query: 309 KGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRT 365
KG LT Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT
Sbjct: 207 KGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRT 266
Query: 366 VAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQD 425
A + E+++D E L+ W+ + ++ L + P L++ ++D
Sbjct: 267 AGANRTKVEIKRDYEYLMRLWETV----RTLTL------KSTAPYLVYEEGNLIKRSIRD 316
Query: 426 YFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSK 485
+N+ + +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML
Sbjct: 317 LYNKDINEILVSGDKGYREAKDFMRMLMPSHAKVVQPYRDHIPIFTRNNIEAQLDKMLQS 376
Query: 486 RVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDI 545
+V L +GG LVI QTEALV+IDVN G H S EK L NL AA++IAR+LRLRD+
Sbjct: 377 KVALKSGGYLVINQTEALVAIDVNSGRSTKEH--SVEKTALQTNLEAAEEIARQLRLRDL 434
Query: 546 GGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFM 605
G+IV+DFIDM ++ N +LV +++K ++ DR+ ++V +S GLME++R+R+R SV
Sbjct: 435 AGLIVIDFIDMLENRNIKLVEKKLKDCLKNDRARIQVGRISHFGLMEMSRQRIRVSVLES 494
Query: 606 ISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKS-YN 643
+PC C GTG V + + + + I + L+S S YN
Sbjct: 495 TMQPCPHCAGTGNVRSESSIALHVMRSIEKYLLSNSQYN 533
>gi|288940467|ref|YP_003442707.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180]
gi|288895839|gb|ADC61675.1| ribonuclease, Rne/Rng family [Allochromatium vinosum DSM 180]
Length = 1001
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 157/477 (32%), Positives = 253/477 (53%), Gaps = 51/477 (10%)
Query: 203 QFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPS 260
Q +N D E G + + + K V I EP EA F D+ E +GF P
Sbjct: 22 QLLYNLDIESPGREQKKANIYKGV----ITRVEPSLEAAFVDY-------GAERHGFLPL 70
Query: 261 KSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPK 318
K E+ P K PG + ++ V++G +V+VQ+ KE G KG LT +
Sbjct: 71 K-EIARSYF--EPDSVK-----PGSRVSIKESVREGREVVVQIDKEERGNKGAALTTFIS 122
Query: 319 LRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQ 376
L R+ +L+ + R G VSR+I G +RT L+ LQ PE G+ +RT G ++EELQ
Sbjct: 123 LAGRYLVLMPNNPRAGGVSRRIEGQDRTELRDAMSQLQLPEDMGMIVRTAGVGKNVEELQ 182
Query: 377 KDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVV 436
DL+ LL W+ I+ +S P L+++ + ++DY + ++V+
Sbjct: 183 WDLDYLLQLWQAIVSSGESRK----------APFLIYQESDVIIRSIRDYLRVDIGEIVI 232
Query: 437 DSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLV 496
D Y ++++ + P ++ LY +PLF ++ IE +I + + V LP+GGS+V
Sbjct: 233 DDRTVYERAENFIRQVMPQNLKKLRLYQDEVPLFTRYQIETQIESAFQREVRLPSGGSIV 292
Query: 497 IEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDM 556
I+ TEAL SID+N G+ E+ L+ NL AA +IAR+LRLRD+GG+ V+DFIDM
Sbjct: 293 IDHTEALTSIDINSARAT--KGADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDM 350
Query: 557 ADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGT 616
N+R V + +++A+++DR+ V+V+ +SR GL+E++R+R+RPS+ + C C+G
Sbjct: 351 GPPKNQRAVEDRLREALKQDRARVQVARISRFGLLEMSRQRLRPSLGESSQQICPRCKGQ 410
Query: 617 GRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP----------KRRKHLKLE 663
G + +E+ + I R+L ++ +ST +P KRR L +E
Sbjct: 411 GTIRGVES----LALSILRILEEEAMKESTQRLQAQLPVSVATFLLNEKRRAILDIE 463
>gi|90579092|ref|ZP_01234902.1| Putative ribonuclease E [Photobacterium angustum S14]
gi|90439925|gb|EAS65106.1| Putative ribonuclease E [Photobacterium angustum S14]
Length = 1094
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/388 (36%), Positives = 216/388 (55%), Gaps = 34/388 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDD---SHTSHPQGTKDSKHTPGEKTWLQVQK 293
EA F D+ E +GF P K EV D ++ S+ QG + K +++
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EVAKDYFPANYSY-QGRPNIKEV--------LKE 96
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK
Sbjct: 97 GQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALS 156
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
TL P+G GL +RT G S EEL+ DL LL+ W + E A S + P L
Sbjct: 157 TLDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWNAVKEAADSQS----------APFL 206
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ ++DY + ++++DSP+ + +++ + PD RV+ Y+ +PLF
Sbjct: 207 IHQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPDFLSRVKRYEGEVPLFS 266
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+ IE +I++ + V LP+GGS+VI+ TEAL SID+N G E+ L NL
Sbjct: 267 HYQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARAT--KGGDIEETALQTNLE 324
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+
Sbjct: 325 AADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLL 384
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRV 619
E++R+R+ PS+ C C GTG V
Sbjct: 385 EMSRQRLSPSLAEASHHVCPRCSGTGVV 412
Score = 38.9 bits (89), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEVAKDY-FP 79
>gi|350553781|ref|ZP_08922941.1| ribonuclease, Rne/Rng family [Thiorhodospira sibirica ATCC 700588]
gi|349789886|gb|EGZ43818.1| ribonuclease, Rne/Rng family [Thiorhodospira sibirica ATCC 700588]
Length = 679
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 145/434 (33%), Positives = 238/434 (54%), Gaps = 35/434 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E +GF P K E+ P+ + +H
Sbjct: 40 NIYKGIITRVEPSLEAAFINY-------GSERHGFLPLK-EI-------SPEYLGEDEHG 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G +V+VQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 NLGRAKSVIKEGMEVLVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER+ ++ I LQ P G G+ RT G + EEL DLE L + W++I++ A
Sbjct: 145 EERSEIREILSQLQVPAGMGVIARTAGVGRTFEELSWDLEYLKTLWESIVQ--------A 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+G + P L+++ + ++D+ + ++VVD P Y + ++Q + P ++
Sbjct: 197 SQGRKA--PFLVYQESNVIIRALRDHLRNDIGEIVVDDPAVYAQAQKFMQQVMPKTLRKL 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY+ +PLF+++ IE +I + + LP+GGS+V + TEAL+SIDVN GS
Sbjct: 255 KLYEDHVPLFNRYQIESQIEAAFERVISLPSGGSVVFDHTEALISIDVNSARAT--RGSD 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA +IAR+LRLRD+GG+I++DFIDM+ N+R V ++ A+E DR+ V
Sbjct: 313 IEETALTTNLEAADEIARQLRLRDLGGLIIIDFIDMSATRNQREVESRLRAALEMDRARV 372
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSK 640
+V +SR GL+E++R+R+RPS+ C C G G + ++E+ + + RL+ +
Sbjct: 373 QVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCSGHGHIRSVES----LSLSVLRLIEEE 428
Query: 641 SYNQSTFYFIRHIP 654
+ T + +P
Sbjct: 429 AMKAKTERVVAQLP 442
Score = 42.4 bits (98), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 42/68 (61%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
ILIN++ R+A+++ +KL ++ +E + ++Y G++T++ P++ AF+N G+
Sbjct: 4 ILINATQPEELRVAMVDGQKLYDIDIETPSREQKKANIYKGIITRVEPSLEAAFINYGSE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|117921008|ref|YP_870200.1| RNAse E [Shewanella sp. ANA-3]
gi|117613340|gb|ABK48794.1| RNAse E [Shewanella sp. ANA-3]
Length = 1098
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 193/336 (57%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A+S
Sbjct: 154 AMADLEVPAGMGLIVRTAGVGKESTELKWDLKVLQHHWAAITEAAQS----------KPA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 382 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES 417
>gi|393784646|ref|ZP_10372808.1| rne/Rng family ribonuclease [Bacteroides salyersiae CL02T12C01]
gi|392665181|gb|EIY58711.1| rne/Rng family ribonuclease [Bacteroides salyersiae CL02T12C01]
Length = 524
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 213/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W+ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEEAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V++ Y+E+ Y+ IAPD D V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIYVNNEAVYNEIKDYVSLIAPDRADIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCTNMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG V KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKFVKQTLSDKKKLNSISKATLLPD---LDKDGTVANTLKVGQ 120
>gi|407070992|ref|ZP_11101830.1| ribonuclease E [Vibrio cyclitrophicus ZF14]
Length = 1057
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 215/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L+ +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLR--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS + +++Q I PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIFERAQAHIQLIRPDFMNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVESRLRDAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|302519047|ref|ZP_07271389.1| conserved hypothetical protein [Streptomyces sp. SPB78]
gi|302427942|gb|EFK99757.1| conserved hypothetical protein [Streptomyces sp. SPB78]
Length = 1045
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 429 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 488
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK+ G P
Sbjct: 489 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKT----------GNAPT 538
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV R + + Y+ +APDL R+ + + F
Sbjct: 539 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEVDAF 598
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 599 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 657
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 658 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 717
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 718 VQMTRKRVGQGLLESFSETCVHCNGRG 744
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ Q I VLED+ LVE + +S +VYLG V ++P+
Sbjct: 333 FLARREAVERVMVVREQGERTQ-IGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPS 391
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 392 MEAAFIDIGKGRNAVL 407
>gi|119469427|ref|ZP_01612366.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Alteromonadales bacterium TW-7]
gi|119447291|gb|EAW28560.1| RNase E: endoribonuclease for rRNA processing and mRNA degradation;
member of the degradosome; involved in the production of
[Alteromonadales bacterium TW-7]
Length = 564
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/422 (35%), Positives = 226/422 (53%), Gaps = 36/422 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKG 294
EA F D+ D H GF P K + + T P G +T + ++ +++G
Sbjct: 54 EAAFVDY-GADRH------GFLPLK----EIARTYFPAG-----YTFNGRPNIRDVIKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VI+QV KE G KG LT + + + +L+ + R G +SR+I G ERT LK
Sbjct: 98 QEVIIQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSR 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL DL+ LL W+ I + A SA P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSFEELNYDLKALLVHWEAIRQAADSAK----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++D PR + E ++++ PD RV+LY PLF
Sbjct: 208 HQESNVIFRAIRDYLRRDIGEILIDKPRVFEEAKAHIERFRPDFMSRVKLYQGDTPLFTH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +K A DR+ V++ ++SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAARPDRARVQIGKISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRH 652
++R+R+RPS+ C C G G V + E+ I I RL+ ++ +T
Sbjct: 386 MSRQRLRPSLGEASQGVCPRCSGQGTVRSNES----IALSILRLIEEEAIKDNTSQVNAQ 441
Query: 653 IP 654
+P
Sbjct: 442 VP 443
>gi|333918793|ref|YP_004492374.1| putative ribonuclease E/ G [Amycolicicoccus subflavus DQS3-9A1]
gi|333481014|gb|AEF39574.1| putative ribonuclease E/ G [Amycolicicoccus subflavus DQS3-9A1]
Length = 1070
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 195/327 (59%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KG LT L RF + + G+SRK+ ER RLK I
Sbjct: 522 LKPGDQVLVQVSKDPVGHKGARLTTQISLAGRFLVYVPEGSSTGISRKLPDNERKRLKDI 581
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + P G+ IRT + G S EEL +D+E L + W +I E AKS +G P
Sbjct: 582 LREIVPADAGVIIRTASEGVSAEELGRDIERLRTLWSSIDEQAKSE--------KGNAPK 633
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+ + +V+D FNE ++VV R ++ V Y++ +APDL DRVE Y F
Sbjct: 634 SLYEEPDLLVKVVRDLFNEDFSRLVVQGDRVWNTVEGYVRKVAPDLLDRVEHYQADQDAF 693
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
F I+E+I L ++V LP+GG+LVI++TEA+ IDVN G G G + E+ + N+
Sbjct: 694 GAFRIDEQITKALDRKVWLPSGGTLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTRNNI 752
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGG+IV+DFIDM +SN+ LV + +A+ RDR+ +VSE++ GL
Sbjct: 753 EAAEEIVRQLRLRDIGGMIVIDFIDMVLESNRDLVLRRLTEALSRDRTRHQVSEVTSLGL 812
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRK++ + S PC C G G
Sbjct: 813 VQMTRKKIGTGLVEAYSTPCEHCHGRG 839
Score = 46.6 bits (109), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 47 LDSDNQKFQDTESLLPEKGSLISKDNF------VSTVILI-----NSSICTMQRIAVLED 95
L++ Q+ +D + + ++++ F V V+++ +S T +IAVLED
Sbjct: 393 LEAKRQRRKDGRDAVRRRPPILTEAEFLARRESVDRVMVVREKQADSQPGTTTQIAVLED 452
Query: 96 EKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
LVE + S ++YLG V ++P+M AFV+IG R ++
Sbjct: 453 SMLVEHFVTSASSGSIVGNIYLGRVQNVLPSMEAAFVDIGRGRNGVL 499
>gi|281420826|ref|ZP_06251825.1| ribonuclease G [Prevotella copri DSM 18205]
gi|281405118|gb|EFB35798.1| ribonuclease G [Prevotella copri DSM 18205]
Length = 523
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 242/434 (55%), Gaps = 20/434 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ H N + +V D P +K
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLDLGSHF----NSYQKYLKQVQSDRKKLFP-FSKA 100
Query: 279 SKHTPGEKTW-LQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGV 335
SK EK +Q ++ G +V+VQ+VKE + TKGP LT R+ +L+ D++ V
Sbjct: 101 SKMPELEKDGSIQNVLKAGQEVLVQIVKEPISTKGPRLTGEISFAGRYLVLMPFGDKVSV 160
Query: 336 SRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAK 394
S KI +G ER+RLK + +++P+ G+ +RTVA G + EL +L+ L+ W++ + +
Sbjct: 161 SSKIKSGEERSRLKQLIHSIKPKNCGVIVRTVAEGKKVAELDAELKVLVKRWEDAIAKVQ 220
Query: 395 SAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAP 454
P L G+ +++++D FN + + V++ EV +Y+ IAP
Sbjct: 221 KTQ---------QRPQLAFEETGRAVALLRDLFNPSYENIYVNNEDVMKEVKNYVSLIAP 271
Query: 455 DLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGM 514
+ V+LY ++P+FD F+I ++I + V +G L+IE TEAL +DVN G+
Sbjct: 272 EKAGIVKLYTGKVPIFDNFSITKQIKAGFGRVVNYKHGAYLIIEHTEALHVVDVNSGNRT 331
Query: 515 FGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVE 574
G +E LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++L+YE + K ++
Sbjct: 332 REKG--QEANALDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQLLYERMCKNMQ 389
Query: 575 RDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEIS 634
+DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG++++ ++E++I
Sbjct: 390 KDRAKHNILPLSKFGLMQITRQRVRPAMDVTVDETCPTCFGTGKIKSSILFTDQLERKID 449
Query: 635 RLLVSKSYNQSTFY 648
RL+ + T Y
Sbjct: 450 RLVNKIGVKKFTLY 463
Score = 44.3 bits (103), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA++ED++LVE EP +++ ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALMEDKQLVEYQNEPREASFSVGNIYIAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|88859601|ref|ZP_01134241.1| RNase E [Pseudoalteromonas tunicata D2]
gi|88818618|gb|EAR28433.1| RNase E [Pseudoalteromonas tunicata D2]
Length = 1080
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 225/424 (53%), Gaps = 40/424 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ H GF P +++ P D + S KD ++
Sbjct: 54 EAAFVDYGAQRH-------GFLPLKEIARTYFPKDYNFSGRPNIKDV-----------IK 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VI 350
+G +VIVQV KE G KG LT + + + +L+ + R G +SR+I G ERT LK +
Sbjct: 96 EGQEVIVQVDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERTDLKDAL 155
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
++ P+G GL +RT G S EEL DL+ LL W I+ ++ +G P
Sbjct: 156 SRLELPKGMGLIVRTAGVGKSFEELDYDLKALLIHWDAIVTASE----------KGPAPF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ ++DY + ++++D R + E ++++ PD RV+LY +PLF
Sbjct: 206 LIHQESNVIFRAIRDYLRRDIGEILIDKTRVFEEAKAHIERFRPDFMSRVKLYKGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ + NL
Sbjct: 266 THYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETAFNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG+IV+DFIDM ++R V +K+AV DR+ V++ ++SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKEAVRPDRARVQIGKISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFI 650
+E++R+R+RPS+ C C G G + + E+ I I RL+ ++ +T
Sbjct: 384 LEMSRQRLRPSLGEASQGTCPRCNGQGTIRSTES----IALSILRLIEEEAIKDNTAQVN 439
Query: 651 RHIP 654
+P
Sbjct: 440 AQVP 443
>gi|318081174|ref|ZP_07988506.1| ribonuclease E [Streptomyces sp. SA3_actF]
Length = 826
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 210 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 269
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK+ G P
Sbjct: 270 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKT----------GNAPT 319
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV R + + Y+ +APDL R+ + + F
Sbjct: 320 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEVDAF 379
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 380 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 438
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 439 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 498
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 499 VQMTRKRVGQGLLESFSETCVHCNGRG 525
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED+ LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 135 QIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 188
>gi|319902743|ref|YP_004162471.1| ribonuclease, Rne/Rng family [Bacteroides helcogenes P 36-108]
gi|319417774|gb|ADV44885.1| ribonuclease, Rne/Rng family [Bacteroides helcogenes P 36-108]
Length = 524
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 214/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ YHE+ Y+ IAP+ D V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFESIHVNDEAVYHEIKDYVTLIAPERADIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K + +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCQNMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVEL E ++YLG + KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKQLVELQSEGRSLYFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|304382112|ref|ZP_07364623.1| rne/Rng family ribonuclease [Prevotella marshii DSM 16973]
gi|304336710|gb|EFM02935.1| rne/Rng family ribonuclease [Prevotella marshii DSM 16973]
Length = 524
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/436 (34%), Positives = 245/436 (56%), Gaps = 31/436 (7%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGT 276
V +++ +N S +D G F +L+ L G+ N + +V D +P + T
Sbjct: 46 VKKLMPGLNASFVDVGYERDAFLHYLD----LGGQFNSYGKYLKQVEADRKKLYPFSKAT 101
Query: 277 K--DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ D K L + G +V+VQVVKE + TKGP LT R+ +LI D++
Sbjct: 102 RLPDLKKDGSVTQTLTI--GQEVLVQVVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ FG+ +RTVA G + EL +L+ LL W +
Sbjct: 160 VSSKIKSGEERARLKQLIHSIKPKNFGIIVRTVAEGRRVAELDTELKVLLKRWDD----- 214
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
A+A + + P L+ G+ +++++D F+ + + +++ ++EV Y+ IA
Sbjct: 215 ---AIAKVQKTQKR-PQLIFEETGRAVAMLRDLFDPTYENIYINNEEVFNEVKQYVTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+ Y +P+FD FNI ++I + K V +G L+IE TEAL +DVN G+
Sbjct: 271 PEKAAIVKQYTGNVPIFDNFNITKQIKSGFGKAVNYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A L+VNL AA ++AR+LRLRD+GGIIVVDFIDM +++L+YE + K +
Sbjct: 331 TRSENGQEANA-LEVNLGAADELARQLRLRDMGGIIVVDFIDMNVAEDRQLLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSF------- 626
++DR+ + LS+ GLM+ITR+RVRP++ + E C C G G++ ++SF
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDVNVDETCPTCFGKGKI---KSSFLFTDQLE 446
Query: 627 SKIEQEISRLLVSKSY 642
KI+ ++++ ++K Y
Sbjct: 447 GKIDHLVNKIGITKFY 462
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP ++ ++Y+ V KL+P + +FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQNEPRSASFSVGNIYVAKVKKLMPGLNASFVDVGYERDAFL---HY 70
>gi|425746014|ref|ZP_18864046.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-323]
gi|425486663|gb|EKU53028.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-323]
Length = 1120
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGSASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTMNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|296134025|ref|YP_003641272.1| ribonuclease, Rne/Rng family [Thermincola potens JR]
gi|296032603|gb|ADG83371.1| ribonuclease, Rne/Rng family [Thermincola potens JR]
Length = 564
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 224/385 (58%), Gaps = 19/385 (4%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E N F + VP T+ + K + H +++G +++VQ+ KE +GTKG
Sbjct: 63 EKNAFLFVEDAVP--PRTTTDEEAKSNYHVNITDV---LKEGQEILVQIAKEPIGTKGAR 117
Query: 313 LTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHS 371
+T + L R+ +L+ + D IG+SR+I ER RLK +A+ ++P GL +RT+A G
Sbjct: 118 VTTHITLPGRYLVLMPTVDYIGISRRIENESERERLKALAEKVKPANMGLIVRTIAEGMD 177
Query: 372 LEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKV 431
EEL +D+ L WK I + G VP L+H+ + I++D F E +
Sbjct: 178 EEELVQDVTVLTKLWKKIQ----------NRSCHGPVPNLIHKDLELVQRILRDIFTEDI 227
Query: 432 KKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPN 491
+++DS Y +V ++ P L RV LY++ LF+KF ++EEI +L RV L
Sbjct: 228 DNLIIDSRYEYEKVLELMELTTPQLKSRVSLYEQD-NLFEKFGVDEEIEKILKPRVWLKC 286
Query: 492 GGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVV 551
GG +VI+QTEAL +IDVN G + ++ +L NL AA +IAR+LRLR+IGGII+V
Sbjct: 287 GGYIVIDQTEALTAIDVNTGK--YVGSTNLADTVLKTNLDAAVEIARQLRLRNIGGIIIV 344
Query: 552 DFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCT 611
DFIDM D ++R+V +++++ V +D++ V L++ GL+E+TRK+VR + ++ +PC
Sbjct: 345 DFIDMPDQEHQRMVLQKLEEEVRKDKTKTNVLGLTQLGLVEMTRKKVRQGLENVLLKPCP 404
Query: 612 CCQGTGRVEALETSFSKIEQEISRL 636
C G G+V + ET + + EI +L
Sbjct: 405 YCDGRGKVLSEETISIRAKNEIFKL 429
>gi|386386413|ref|ZP_10071570.1| ribonuclease E [Streptomyces tsukubaensis NRRL18488]
gi|385666126|gb|EIF89712.1| ribonuclease E [Streptomyces tsukubaensis NRRL18488]
Length = 452
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 46 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 105
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AKS G P
Sbjct: 106 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIKKKAKS----------GNAPT 155
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE +++V + V Y+ +APDL DR++ + + +F
Sbjct: 156 LLYGEPDMTVRVVRDIFNEDFSRVIVSGDEAWQTVHGYVAHVAPDLVDRLQRWTSEVDVF 215
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ IDVN G G G + E+ + NL
Sbjct: 216 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGK-FTGQGGNLEETVTRNNL 274
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 275 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 334
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 335 VQMTRKRVGQGLLESFSETCVHCNGRG 361
>gi|29832008|ref|NP_826642.1| hypothetical protein SAV_5465 [Streptomyces avermitilis MA-4680]
gi|29609126|dbj|BAC73177.1| hypothetical protein SAV_5465 [Streptomyces avermitilis MA-4680]
Length = 1387
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 201/337 (59%), Gaps = 11/337 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 705 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 764
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 765 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS----------GNAPT 814
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 815 LLYGEPDMTVRVVRDIFNEDFTKVIVSGDEAWETIHGYVAHVAPDLSDRLSKWTSEVDVF 874
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 875 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 933
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 934 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 993
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+++TRKRV + SE C C G G + +E S
Sbjct: 994 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 1030
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + +S +VYLG V ++P+
Sbjct: 608 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPS 666
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 667 MEAAFIDIGKGRNAVL 682
>gi|359786229|ref|ZP_09289365.1| ribonuclease E [Halomonas sp. GFAJ-1]
gi|359296343|gb|EHK60595.1| ribonuclease E [Halomonas sp. GFAJ-1]
Length = 1084
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 212/385 (55%), Gaps = 30/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K S KD P K L+ +G +
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-------EISREYFIKDVSGRPSIKEVLK--EGQE 97
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L RF +L+ + R G +SR+I G +R++LK + +
Sbjct: 98 VIVQVDKEERGNKGAALTTFISLAGRFLVLMPNNPRAGGISRRIEGDDRSQLKDAMGQLT 157
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ GL +RT G S EELQ DL+ L+ W++I E + + P L++R
Sbjct: 158 VPDKMGLIVRTAGIGRSSEELQWDLDYLVQVWESIT----------TEAGKRSAPFLIYR 207
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++DSP + E +++ + P +++LY +PLF +F
Sbjct: 208 ESNVIIRAMRDYLRQDIGEVLIDSPEIHEEALGFIRQVMPSYQQKIKLYVDEVPLFSRFQ 267
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N GS E+ L N AA
Sbjct: 268 IESQIETAYQREVKLPSGGSIVIDHTEALVSIDINSARAT--RGSDIEETALQTNSEAAD 325
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N+R V ++ A++ DR+ V++ +SR GLME++
Sbjct: 326 EIARQLRLRDIGGLVVIDFIDMGPARNQREVENRMRDALKLDRARVQIGRISRFGLMEMS 385
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+RPS+ C C G G +
Sbjct: 386 RQRLRPSLGETSGVVCPRCNGQGTI 410
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDFGAE 63
Query: 138 RPSLMDIKH-YREPFI 152
R + +K RE FI
Sbjct: 64 RHGFLPLKEISREYFI 79
>gi|83814929|ref|YP_444634.1| ribonuclease [Salinibacter ruber DSM 13855]
gi|83756323|gb|ABC44436.1| ribonuclease, Rne/Rng family subfamily [Salinibacter ruber DSM
13855]
Length = 596
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 211/365 (57%), Gaps = 16/365 (4%)
Query: 273 PQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDR 332
P+G KD P + + +G ++VQV KE + KG ++ L RF +L+ +
Sbjct: 97 PKGKKDWDKRPSD----LLNRGQTILVQVTKEPISNKGSRISTDISLAGRFLVLVPLQNY 152
Query: 333 IGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391
+ VSRKIT ER RL+ +A +L P+G G+ +RTVA + L KD++ L+ W+ + +
Sbjct: 153 VAVSRKITDDEERRRLESLASSLVPDGVGVIVRTVAQDRDAKSLDKDMKLLMERWRRVEK 212
Query: 392 HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQD 451
K + + P L+H + SIV+D F+E+ +++VD Y + SY++
Sbjct: 213 RLKD---------KPSPPELVHEDVDMASSIVRDEFSEEYDRILVDHEGLYSSIQSYVRA 263
Query: 452 IAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGG 511
+ P L DRVEL++ P+F+ I+ + RV LP+GG L IE+TEA+ +DVN G
Sbjct: 264 VGPQLVDRVELHEGDQPVFESVGIQHGADRAFKDRVELPSGGYLFIEKTEAMHVVDVNSG 323
Query: 512 HGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKK 571
G G S+ + L+VNL AA+ IAR++RLRD+GGIIVVDFID+ D+ +K+ VY+EVKK
Sbjct: 324 RS--GKGKSQAENSLNVNLEAARVIARQIRLRDLGGIIVVDFIDLRDEDDKKKVYDEVKK 381
Query: 572 AVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQ 631
E DR++ KV +S GL+EITR+R+RPS+T S G A + E+
Sbjct: 382 GFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTTFSSANGTPSDDGDDGADPEELRQAER 441
Query: 632 EISRL 636
+I L
Sbjct: 442 KIQSL 446
Score = 47.4 bits (111), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
RIA++ED KLVEL +E + ++YLG + K++P++ AFV+IG + + +
Sbjct: 15 RIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAAFVDIGQEQDAFL 68
>gi|407802525|ref|ZP_11149366.1| phosphoric diester hydrolase [Alcanivorax sp. W11-5]
gi|407023680|gb|EKE35426.1| phosphoric diester hydrolase [Alcanivorax sp. W11-5]
Length = 971
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 145/386 (37%), Positives = 207/386 (53%), Gaps = 29/386 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQV-QKGT 295
EA F DF E +GF P K S +KD K G V ++G
Sbjct: 54 EAAFVDF-------GAERHGFLPLK-------EISRQYFSKDPKDIQGRINIKDVIREGQ 99
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG L+ + L R+ +L+ + R G +SR+I G ER LK L
Sbjct: 100 EVIVQVDKEERGNKGAALSTFISLAGRYLVLMPNNPRAGGISRRIEGDERQELKEAMNAL 159
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P G+ +RT G S EELQ DL LL W +I A E P L++
Sbjct: 160 TIPNDMGVIVRTAGLGRSAEELQWDLNYLLKLWDSISTAAN----------ERPAPFLVY 209
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++DS T+ E ++ + D +++LY PLF ++
Sbjct: 210 QESNVIIRAIRDYLRKDIGEVLIDSEETFAEANGFVSQVMSDFSHKIKLYRDETPLFSRY 269
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L NL AA
Sbjct: 270 QIESQIETAFRREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALQTNLEAA 327
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
+IAR+LRLRDIGG+IVVDFIDM N+R V +++A+E DR+ V+V +SR GLME+
Sbjct: 328 DEIARQLRLRDIGGLIVVDFIDMGPARNQRDVENRMREALEADRARVQVGRISRFGLMEL 387
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRV 619
+R+R+RPS+ S C C G G +
Sbjct: 388 SRQRLRPSLGETSSIVCPRCNGQGHI 413
>gi|392409912|ref|YP_006446519.1| RNAse G [Desulfomonile tiedjei DSM 6799]
gi|390623048|gb|AFM24255.1| RNAse G [Desulfomonile tiedjei DSM 6799]
Length = 520
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 149/422 (35%), Positives = 236/422 (55%), Gaps = 18/422 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +VL + + +D G P A F + HH+ +SE + P G D
Sbjct: 57 VIKVLPGMQAAFVDIGLPRAAFLYVGDIHHHIHDLDFMMNEEESEAQQEEENGLPDGIHD 116
Query: 279 S--KHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
+ +TP E+ +Q+G V+VQ+ KE LG+KG +T++ + R + + + D IG+S
Sbjct: 117 TIPSYTPIEEL---IQEGEDVLVQISKEPLGSKGARITSHISIPGRHLVFMPTVDHIGIS 173
Query: 337 RKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
R+I VER RLK I ++P G+ +RTV+ + E+LQ DL L +W+ I+E K
Sbjct: 174 RRIENEVERQRLKDIIAEIKPPSCGIIVRTVSEHETQEKLQADLTFLQGSWERILEKEKK 233
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
P L++ + L V+D F E V +++VDS Y+ V ++ P
Sbjct: 234 VP----------APSLIYEDLDLCLRGVRDLFTENVSRLIVDSREYYNRVIEFMDTFMPS 283
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
L +VELY+ P+FD F IE E+N L ++V L +GG + I+ TEALV+IDVN G F
Sbjct: 284 LKAQVELYEGEEPIFDYFGIEMELNKALGRKVWLKSGGYINIDFTEALVAIDVNTGR--F 341
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
+ ++ IL NL AA++IA +LRLR+IGGII+VDFIDM +++ V+ +++A+ +
Sbjct: 342 VGKRNLQETILKTNLEAAREIAYQLRLRNIGGIIIVDFIDMDRPTDRDKVFNALQEALRK 401
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
D+ + ++S GL+++TRKR R S+T + E C C+G G +++ T +I + I R
Sbjct: 402 DKQKTNILKISELGLVQMTRKRTRESLTRTLCEQCPYCEGKGFLKSQTTVCYEILRAIGR 461
Query: 636 LL 637
L
Sbjct: 462 EL 463
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM---DIK 145
R+A++E ++VEL LE ++Y G V K++P M AFV+IG R + + DI
Sbjct: 26 RLAMIESGQVVELHLERKGERGIVGNIYKGRVIKVLPGMQAAFVDIGLPRAAFLYVGDIH 85
Query: 146 HY 147
H+
Sbjct: 86 HH 87
>gi|319775659|ref|YP_004138147.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3047]
gi|317450250|emb|CBY86466.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3047]
Length = 932
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 214/389 (55%), Gaps = 36/389 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 93 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 153 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 203 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 380
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 381 LEMSRQRLSPSLGESSHHICPRCQGTGKV 409
>gi|375266160|ref|YP_005023603.1| ribonuclease E [Vibrio sp. EJY3]
gi|369841481|gb|AEX22625.1| ribonuclease E [Vibrio sp. EJY3]
Length = 1029
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 214/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKDASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++Q + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKAHIQLVRPDFINRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|184200774|ref|YP_001854981.1| putative ribonuclease [Kocuria rhizophila DC2201]
gi|183581004|dbj|BAG29475.1| putative ribonuclease [Kocuria rhizophila DC2201]
Length = 1145
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 194/327 (59%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER RLK I
Sbjct: 420 LKSGDTVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPGGSMTGISRKLPDVERQRLKKI 479
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K PEG G+ +RT A G S EL D+ L S W+ I E A S A P
Sbjct: 480 LKDRLPEGAGVIVRTAAEGASETELTNDINRLRSQWEQIQEKAGSTKTLA--------PE 531
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ V+D FNE MVV + + + +Y+ +APDL DR++ + + LF
Sbjct: 532 LLYAEPDLTIKTVRDVFNEDFTAMVVQGEQAWDNIEAYVTYVAPDLLDRLQRWTEDEDLF 591
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ +EE+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 592 EHMRVEEQIQKALERKVFLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNL 650
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 651 EAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGL 710
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKR+ + + SEPC C G G
Sbjct: 711 VQMTRKRMGTGLLEVFSEPCEECAGRG 737
>gi|402756740|ref|ZP_10858996.1| ribonuclease E [Acinetobacter sp. NCTC 7422]
Length = 1137
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 112 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 172 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGSASS----------GPS 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 222 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 282 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 340 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 399
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 400 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 435
>gi|226951904|ref|ZP_03822368.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter sp. ATCC 27244]
gi|294649163|ref|ZP_06726604.1| ribonuclease E (RNase E) [Acinetobacter haemolyticus ATCC 19194]
gi|226837444|gb|EEH69827.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter sp. ATCC 27244]
gi|292824961|gb|EFF83723.1| ribonuclease E (RNase E) [Acinetobacter haemolyticus ATCC 19194]
Length = 1143
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 132/336 (39%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 112 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I TL P G + +RT G + EELQ DL+ LL W I A + G
Sbjct: 172 ILATLNIPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQSSAST----------GPS 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 222 PMLVHQEAGVVTRAIRDYLRDDVGEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 282 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 340 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 399
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 400 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 435
>gi|294506385|ref|YP_003570443.1| ribonuclease E [Salinibacter ruber M8]
gi|294342713|emb|CBH23491.1| Ribonuclease E [Salinibacter ruber M8]
Length = 596
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 211/365 (57%), Gaps = 16/365 (4%)
Query: 273 PQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDR 332
P+G KD P + + +G ++VQV KE + KG ++ L RF +L+ +
Sbjct: 97 PKGKKDWDKRPSD----LLNRGQTILVQVTKEPISNKGSRISTDISLAGRFLVLVPLQNY 152
Query: 333 IGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391
+ VSRKIT ER RL+ +A +L P+G G+ +RTVA + L KD++ L+ W+ + +
Sbjct: 153 VAVSRKITDDEERRRLESLASSLVPDGVGVIVRTVAQDRDAKSLDKDMKLLMERWRRVEK 212
Query: 392 HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQD 451
K + + P L+H + SIV+D F+E+ +++VD Y + SY++
Sbjct: 213 RLKD---------KPSPPELVHEDVDMASSIVRDEFSEEYDRILVDHEGLYSSIQSYVRA 263
Query: 452 IAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGG 511
+ P L DRVEL++ P+F+ I+ + RV LP+GG L IE+TEA+ +DVN G
Sbjct: 264 VGPQLVDRVELHEGDQPVFESVGIQHGADRAFKDRVELPSGGYLFIEKTEAMHVVDVNSG 323
Query: 512 HGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKK 571
G G S+ + L+VNL AA+ IAR++RLRD+GGIIVVDFID+ D+ +K+ VY+EVKK
Sbjct: 324 RS--GKGKSQAENSLNVNLEAARVIARQIRLRDLGGIIVVDFIDLRDEDDKKKVYDEVKK 381
Query: 572 AVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQ 631
E DR++ KV +S GL+EITR+R+RPS+T S G A + E+
Sbjct: 382 GFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTTFSSANGTPSDDGDDGADPEELRQAER 441
Query: 632 EISRL 636
+I L
Sbjct: 442 KIQSL 446
Score = 47.0 bits (110), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
RIA++ED KLVEL +E + ++YLG + K++P++ AFV+IG + + +
Sbjct: 15 RIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAAFVDIGQEQDAFL 68
>gi|145630414|ref|ZP_01786195.1| hydroxyethylthiazole kinase [Haemophilus influenzae R3021]
gi|145638676|ref|ZP_01794285.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittII]
gi|144984149|gb|EDJ91586.1| hydroxyethylthiazole kinase [Haemophilus influenzae R3021]
gi|145272271|gb|EDK12179.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittII]
gi|309750169|gb|ADO80153.1| Ribonuclease E [Haemophilus influenzae R2866]
Length = 938
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 214/389 (55%), Gaps = 36/389 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|224825745|ref|ZP_03698849.1| ribonuclease, Rne/Rng family [Pseudogulbenkiania ferrooxidans 2002]
gi|224601969|gb|EEG08148.1| ribonuclease, Rne/Rng family [Pseudogulbenkiania ferrooxidans 2002]
Length = 1002
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 149/421 (35%), Positives = 229/421 (54%), Gaps = 41/421 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ V K N+ +I EP EA F D+ H GF P K EV
Sbjct: 26 DLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRH-------GFLPFK-EVSRSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
++ G + +++G +V+VQV K+ G KG LT Y L R+ +L+
Sbjct: 78 FQNYEGGRPRIQDV--------LREGMEVMVQVEKDERGNKGAALTTYISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR+I G ER LK ++A+ P+G L RT G + EELQ DL LL W
Sbjct: 130 NNPRGGGVSRRIEGEERQELKDLLAQLEVPQGMSLIARTAGIGRTFEELQWDLNYLLQLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAV--PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHE 444
+ I EG GA P+L+ + + ++DY+ + ++++D+ + +
Sbjct: 190 RAI------------EGAAGAQSGPLLILQEGSLVIRAIRDYYQPDIGEILIDTEEIHEQ 237
Query: 445 VTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALV 504
++ + P+ +RV+LY +PLF +F IE +I S+ V LP+GG++VI+ TEALV
Sbjct: 238 ARQFMAHVMPNTINRVKLYQDPVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALV 297
Query: 505 SIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRL 564
S+DVN G+ E+ L NL AA++IAR+LRLRD+GG+IV+DFIDM N+R
Sbjct: 298 SVDVNSARAT--KGADIEETALKTNLEAAEEIARQLRLRDLGGLIVIDFIDMEIQKNQRE 355
Query: 565 VYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
V ++ ++ DR+ V++ +LSR GL+E++R+R++PS+ EPC C G G + E+
Sbjct: 356 VENRLRDVLKHDRARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTES 415
Query: 625 S 625
S
Sbjct: 416 S 416
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E V + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTD 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|385653137|ref|ZP_10047690.1| ribonuclease G and E [Leucobacter chromiiresistens JG 31]
Length = 840
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/327 (39%), Positives = 195/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I
Sbjct: 307 LKPGDQVLVQVTKDPVGHKGARLTSQISLPGRFLVYVPGGAMNGISRKLPDTERARLKKI 366
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G G+ +RT A G S ++L D++ L W++I + + +G P+
Sbjct: 367 LKEVLPTGAGVIVRTAAEGASEDQLTHDVQRLTRQWESIQKRVE----------KGGGPV 416
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LLH + IV+D FNE ++ + TY + YL +APDL +RVE Y +F
Sbjct: 417 LLHSEPDMLIKIVRDVFNEDFHRLTISGADTYGTIEHYLSQVAPDLLERVEQYQGERDIF 476
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
D++ + E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 477 DEYRVTEQIAKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKNNL 535
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 536 EAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRMVECLSRDRTKHQVAEVTSLGL 595
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRK++ + SEPC C G G
Sbjct: 596 VQMTRKKLGLGLLESFSEPCDVCAGRG 622
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V +++ ++ +Q I VLED+ LVE + N +VYLG V ++P+
Sbjct: 210 FLARRESVDREMIVRTTADRVQ-IGVLEDKVLVEHYVARSSENSLIGNVYLGRVQNVLPS 268
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 269 MEAAFVDIGRGRNAVL 284
>gi|323499351|ref|ZP_08104327.1| ribonuclease E [Vibrio sinaloensis DSM 21326]
gi|323315536|gb|EGA68571.1| ribonuclease E [Vibrio sinaloensis DSM 21326]
Length = 1001
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 213/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|429195719|ref|ZP_19187728.1| ribonuclease, Rne/Rng family [Streptomyces ipomoeae 91-03]
gi|428668579|gb|EKX67593.1| ribonuclease, Rne/Rng family [Streptomyces ipomoeae 91-03]
Length = 1425
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 747 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 806
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 807 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS----------GNAPT 856
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R++ + + +F
Sbjct: 857 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLAERLQKWTSEVDVF 916
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 917 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 975
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 976 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1035
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 1036 VQMTRKRVGQGLLESFSETCVHCNGRG 1062
Score = 42.7 bits (99), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + +S +VYLG V ++P+
Sbjct: 650 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPS 708
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 709 MEAAFIDIGKGRNAVL 724
>gi|229844425|ref|ZP_04464565.1| ribonuclease E [Haemophilus influenzae 6P18H1]
gi|229812674|gb|EEP48363.1| ribonuclease E [Haemophilus influenzae 6P18H1]
Length = 938
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 214/389 (55%), Gaps = 36/389 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|386390182|ref|ZP_10074978.1| ribonuclease E [Haemophilus paraphrohaemolyticus HK411]
gi|385693866|gb|EIG24498.1| ribonuclease E [Haemophilus paraphrohaemolyticus HK411]
Length = 990
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 221/399 (55%), Gaps = 30/399 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S P+G S
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPEGYVFSGR- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I A+S
Sbjct: 146 DERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKNAAQSRP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+ S +SR GL+E++R+R+ PS++ S C CQGTG+V
Sbjct: 374 QFSRISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKV 412
>gi|318060733|ref|ZP_07979456.1| ribonuclease E [Streptomyces sp. SA3_actG]
Length = 881
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 151 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 210
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L S W++I + AK+ G P
Sbjct: 211 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQSQWEDIQKKAKT----------GNAPT 260
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV R + + Y+ +APDL R+ + + F
Sbjct: 261 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDRAWETIHGYVSHVAPDLVGRLSRWTSEVDAF 320
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 321 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 379
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 380 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 439
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 440 VQMTRKRVGQGLLESFSETCVHCNGRG 466
Score = 43.5 bits (101), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED+ LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 76 QIGVLEDDVLVEHYVNKAESTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 129
>gi|315608691|ref|ZP_07883669.1| ribonuclease G [Prevotella buccae ATCC 33574]
gi|315249541|gb|EFU29552.1| ribonuclease G [Prevotella buccae ATCC 33574]
Length = 523
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 233/422 (55%), Gaps = 18/422 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGT 276
V +++ +N +D G F +L+ L + N + +V D +P + T
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYQKYFKQVQSDRKKLYPFAKAT 101
Query: 277 KDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
+ +Q G +V+VQ+VKE + TKGP LT R+ +LI D++ VS
Sbjct: 102 RLPDLDKAGSITQPLQPGQEVMVQIVKEPISTKGPRLTGELSFAGRYLVLIPFGDKVSVS 161
Query: 337 RKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L W++ + +
Sbjct: 162 TKIKSGEERARLKQLIHSIKPKNCGVIVRTVAEGKRVAELDAELKVLNQRWEDAIVKVQK 221
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
P L+ G+ +++++D F+ + + V+ +EV Y+ IAP+
Sbjct: 222 TQ---------KRPQLVFEETGRAVALLRDLFDPTYENIYVNDEGVMNEVKHYVSLIAPE 272
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
D V+LY ++P+FD FNI ++I K + +G L+IE TEAL +DVN G+
Sbjct: 273 KADIVKLYTGKLPIFDNFNITKQIKASFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTR 332
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
G +E LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +++
Sbjct: 333 QKG--QEANALDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNMQK 390
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG++ + ++E +I R
Sbjct: 391 DRAKHNILPLSKFGLMQITRQRVRPAMDVNVEETCPTCNGTGKIRSSILFTDQLEGKIDR 450
Query: 636 LL 637
L+
Sbjct: 451 LV 452
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP +++ ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKQLVEYQNEPRQASFTVGNIYMAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|444345906|ref|ZP_21153909.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
gi|443542330|gb|ELT52673.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype c
str. AAS4A]
Length = 963
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 198/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 412
>gi|288926401|ref|ZP_06420323.1| ribonuclease G [Prevotella buccae D17]
gi|402308467|ref|ZP_10827472.1| ribonuclease E/G family protein [Prevotella sp. MSX73]
gi|288336854|gb|EFC75218.1| ribonuclease G [Prevotella buccae D17]
gi|400375271|gb|EJP28178.1| ribonuclease E/G family protein [Prevotella sp. MSX73]
Length = 523
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/422 (33%), Positives = 233/422 (55%), Gaps = 18/422 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGT 276
V +++ +N +D G F +L+ L + N + +V D +P + T
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYQKYFKQVQSDRKKLYPFAKAT 101
Query: 277 KDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
+ +Q G +V+VQ+VKE + TKGP LT R+ +LI D++ VS
Sbjct: 102 RLPDLDKAGSITQPLQPGQEVMVQIVKEPISTKGPRLTGELSFAGRYLVLIPFGDKVSVS 161
Query: 337 RKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L W++ + +
Sbjct: 162 TKIKSGEERARLKQLIHSIKPKNCGVIVRTVAEGKRVAELDAELKVLNQRWEDAIVKVQK 221
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
P L+ G+ +++++D F+ + + V+ +EV Y+ IAP+
Sbjct: 222 TQ---------KRPQLVFEETGRAVALLRDLFDPTYENIYVNDEGVMNEVKHYVSLIAPE 272
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
D V+LY ++P+FD FNI ++I K + +G L+IE TEAL +DVN G+
Sbjct: 273 KADIVKLYTGKLPIFDNFNITKQIKASFGKTINYKHGAYLIIEHTEALHVVDVNSGNRTR 332
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
G +E LDVNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +++
Sbjct: 333 QKG--QEANALDVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNMQK 390
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG++ + ++E +I R
Sbjct: 391 DRAKHNILPLSKFGLMQITRQRVRPAMDVNVEETCPTCNGTGKIRSSILFTDQLEGKIDR 450
Query: 636 LL 637
L+
Sbjct: 451 LV 452
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP +++ ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKQLVEYQNEPRQASFTVGNIYMAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|302551388|ref|ZP_07303730.1| ribonuclease E and G [Streptomyces viridochromogenes DSM 40736]
gi|302469006|gb|EFL32099.1| ribonuclease E and G [Streptomyces viridochromogenes DSM 40736]
Length = 782
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/337 (38%), Positives = 201/337 (59%), Gaps = 11/337 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 223 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKSI 282
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L + W+ I + AKS G P
Sbjct: 283 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWEEIQKKAKS----------GNAPT 332
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 333 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWSTIHGYVSHVAPDLAERLSKWTSEVDVF 392
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 393 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 451
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 452 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 511
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+++TRKRV + SE C C G G + +E S
Sbjct: 512 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 548
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ Q I VLED LVE + +S +VYLG V ++P+
Sbjct: 126 FLARREAVERVMVVRQHGDRTQ-IGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPS 184
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 185 MEAAFIDIGKGRNAVL 200
>gi|269102255|ref|ZP_06154952.1| ribonuclease E [Photobacterium damselae subsp. damselae CIP 102761]
gi|268162153|gb|EEZ40649.1| ribonuclease E [Photobacterium damselae subsp. damselae CIP 102761]
Length = 1095
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/389 (35%), Positives = 210/389 (53%), Gaps = 36/389 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P +K P D QG + K ++
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIAKEYFPQDYSY---QGRPNIKEV--------LK 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK
Sbjct: 93 EGQEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAAL 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
TL+ P G GL +RT G S EEL+ DL LL+ W + E A + P
Sbjct: 153 STLELPHGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAVKEAADAQP----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ ++DY + ++++DSP+ + +++ + PD RV+ Y+ +PLF
Sbjct: 203 LIHQESNVIARAIRDYLRRDIGEILIDSPKIFERARDHIKLVRPDFISRVKRYEGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALQTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGL 380
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C C GTG V
Sbjct: 381 LEMSRQRLSPSLAEASHHVCPRCTGTGVV 409
Score = 39.3 bits (90), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 61 RHGFLPLKEIAKEY-FP 76
>gi|149926439|ref|ZP_01914700.1| ribonuclease E [Limnobacter sp. MED105]
gi|149824802|gb|EDM84016.1| ribonuclease E [Limnobacter sp. MED105]
Length = 972
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 223/405 (55%), Gaps = 31/405 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K + S +G + K
Sbjct: 40 NIYKGIITRVEPSLEACFVNYGEDRH-------GFLPFK----EISRQYFKEGVEAGKA- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ V++G ++ VQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 88 ---RIQDVVKEGQELFVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ L+ P+G + RT G S+EELQ DL LL W I KSA A
Sbjct: 145 EERQELREALDKLEYPKGMSIIARTAGIGRSVEELQWDLNYLLQLWTAIDGAGKSANGA- 203
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
L+++ + ++DYF+ + ++++D+ Y + ++Q + PD+ + V
Sbjct: 204 ---------FLIYQESSLVIRAIRDYFSPDIGEVLIDTDEIYDQAKQFMQHVMPDMMNLV 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y IPLF +F IE +I S+ VPLP+GG++VI+ TEALVSIDVN G+
Sbjct: 255 KRYRDDIPLFSRFQIEHQIETAYSRMVPLPSGGAIVIDHTEALVSIDVNSARST--RGTD 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E L NL AA+++AR+LRLRD+GG+IV+DFIDM SN++ V VK ++ DR+ V
Sbjct: 313 IEDTALRTNLEAAEEVARQLRLRDLGGLIVIDFIDMEKASNQKEVENRVKDSLHFDRARV 372
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ ++SR GLME++R+R+RP++ C C GTG + E++
Sbjct: 373 QMGKISRFGLMELSRQRIRPALNEGSHTTCPRCNGTGVIRDTEST 417
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATHSEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGIITRVEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|145632660|ref|ZP_01788394.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae 3655]
gi|145636318|ref|ZP_01791987.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittHH]
gi|144986855|gb|EDJ93407.1| 23S rRNA pseudouridylate synthase C [Haemophilus influenzae 3655]
gi|145270483|gb|EDK10417.1| hydroxyethylthiazole kinase [Haemophilus influenzae PittHH]
Length = 938
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 214/389 (55%), Gaps = 36/389 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|54308379|ref|YP_129399.1| ribonuclease E [Photobacterium profundum SS9]
gi|46912807|emb|CAG19597.1| Putative ribonuclease E [Photobacterium profundum SS9]
Length = 1100
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/403 (35%), Positives = 221/403 (54%), Gaps = 35/403 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K EV D ++ QG + K +++G
Sbjct: 54 EAAFVDY-------GSERHGFLPLK-EVARDYFPANYTYQGRPNIKEV--------LKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK T
Sbjct: 98 QEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALST 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL+ DL LL+ W + E A S + P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAVKEAADS----------NSAPFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++DSP+ + +++ I PD RV+ Y+ +PLF
Sbjct: 208 HQESNVIARAIRDYLRRDIGEILIDSPKIFDRAREHIKLIRPDFLSRVKRYEGEVPLFSH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETAFQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 326 ADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
++R+R+ PS+ C C GTG V E+L S ++ +E
Sbjct: 386 MSRQRLSPSLAEASHHVCPRCTGTGVVRDNESLSLSILRLIEE 428
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 64 RHGFLPLKEVARDY-FP 79
>gi|261868549|ref|YP_003256471.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413881|gb|ACX83252.1| ribonuclease E (RNase E) [Aggregatibacter actinomycetemcomitans
D11S-1]
Length = 960
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 198/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 379 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 409
>gi|256822393|ref|YP_003146356.1| Rne/Rng family ribonuclease [Kangiella koreensis DSM 16069]
gi|256795932|gb|ACV26588.1| ribonuclease, Rne/Rng family [Kangiella koreensis DSM 16069]
Length = 951
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 149/412 (36%), Positives = 223/412 (54%), Gaps = 33/412 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K EV + + P S+ P K L+ +G +
Sbjct: 55 EAAFVDY-------GAERHGFLPLK-EVAREYMQNAP-----SRGRPTIKEALK--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
+IVQ+ KE G KG LT L + +L+ + R G +SR+I G ERT LK + L
Sbjct: 100 IIVQIDKEERGNKGAALTTSISLAGSYLVLMPNNPRAGGISRRIEGDERTELKQVMSQLP 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P G G +RT G SLEE+Q D L+ TW I + A G A P L+ +
Sbjct: 160 VPNGMGCIVRTAGIGKSLEEIQYDFNYLIDTWNGIKQVA---------GTRPA-PFLITQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
++DY + ++++D P Y V S LQ PD +V+LY IPLF+++
Sbjct: 210 ESDVITRAIRDYLRPDIGEIIIDRPEIYERVKSELQYQRPDFVSKVKLYRDEIPLFNRYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
+E +I + + V LP+GGS+V +QTEAL+SID+N G E+ L N+ AA+
Sbjct: 270 VESQIESAFQREVRLPSGGSVVFDQTEALLSIDINSARAT--KGGDIEETALHTNVEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V +K +V RDR+ +++ +SR GL+E++
Sbjct: 328 EIARQLRLRDIGGLIVIDFIDMGPPRNQREVERVLKDSVARDRARIQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
R+R+RPS+ C C G+G + ++ + I RL+ ++ +ST
Sbjct: 388 RQRLRPSLEESSQHVCPRCTGSGVIRGTDS----LALSILRLMEDEAMKEST 435
>gi|416053284|ref|ZP_11578782.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
gi|347991209|gb|EGY32702.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype e
str. SC1083]
Length = 963
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 199/331 (60%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L P+G GL +RT G + EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPDGVGLIVRTAGVGKTPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + PD +R++LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPQVYEKAKAHIKLVRPDFINRMKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 412
>gi|317123011|ref|YP_004103014.1| RNAse G [Thermaerobacter marianensis DSM 12885]
gi|315592991|gb|ADU52287.1| RNAse G [Thermaerobacter marianensis DSM 12885]
Length = 565
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 212/387 (54%), Gaps = 17/387 (4%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E N F VP D +H + G ++IVQ+VKE G KG
Sbjct: 63 ERNAFLYVADAVPRGEDAEDDDLPDDLRHAAITDL---LHPGQEIIVQIVKEPTGNKGAR 119
Query: 313 LTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHS 371
+T + L R +L+ D +GVSR+I ER RLK +A++LQP G GL +RT A G S
Sbjct: 120 VTRHLTLPGRLLVLMPGVDYVGVSRRIHDEKERQRLKQLAQSLQPPGAGLIVRTAAEGRS 179
Query: 372 LEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKV 431
EL+ D+E L W +I A+ P+LL+R +G +V+D +V
Sbjct: 180 EAELRGDVEYLTRLWADIQRRARRER----------APVLLYRDLGLVFRVVRDMLTPEV 229
Query: 432 KKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-IPLFDKFNIEEEINNMLSKRVPLP 490
++ +D P Y + + A L DRV LY R LF+++ I EEI L +RV L
Sbjct: 230 DEVWIDDPTEYRRMLDLMAAFASPLRDRVHLYQNREAGLFEQYGINEEIERALKRRVWLK 289
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI+QTEAL +IDVN G F + + N+ AA +IAR+LRLRDIGGIIV
Sbjct: 290 SGGYLVIDQTEALTAIDVNTGK--FVGSKNLADTVFRTNMEAAAEIARQLRLRDIGGIIV 347
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDM + S+++ V +E+++ + RD + V ++ GL+E+TRK+ R S+ ++ C
Sbjct: 348 IDFIDMEEPSHRQRVVQELERHLARDHTKATVLGITSLGLVEMTRKKGRRSLLEQLTREC 407
Query: 611 TCCQGTGRVEALETSFSKIEQEISRLL 637
C G GRV + E++ ++ +EI R+L
Sbjct: 408 PYCDGRGRVLSEESAARRVRREIKRIL 434
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDI 144
R+AVLED++LVE+ E + +VY G V ++P M AFVNIG R + + +
Sbjct: 15 RVAVLEDDRLVEIYHERPSNQRVAGNVYKGKVENVLPGMQAAFVNIGLERNAFLYV 70
>gi|386265192|ref|YP_005828684.1| Ribonuclease E [Haemophilus influenzae R2846]
gi|309972428|gb|ADO95629.1| Ribonuclease E [Haemophilus influenzae R2846]
Length = 935
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 138/389 (35%), Positives = 214/389 (55%), Gaps = 36/389 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|431929967|ref|YP_007243013.1| Rne/Rng family ribonuclease [Thioflavicoccus mobilis 8321]
gi|431828270|gb|AGA89383.1| ribonuclease, Rne/Rng family [Thioflavicoccus mobilis 8321]
Length = 1094
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 217/366 (59%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +V+VQ+ KE G KG LT + L R+ +L+ + R G VSR+I G +RT L+
Sbjct: 95 VKEGREVVVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGEDRTELRA 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ PE GL +RT G ++EELQ DL+ LL W+ I + A E +
Sbjct: 155 TMSQLQIPEDMGLIVRTAGVGKNVEELQWDLDYLLQLWQAIEKSAD----------ERSA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DY + ++V+D + Y + +++ + P ++ LY+ +P
Sbjct: 205 PFLIYQESDVIIRSIRDYLRVDIGEIVIDDRKMYEKAEQFMRQVMPGNLKKLRLYEDEVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I ++ + V LP+GGS+VI+ TEAL S+D+N G+ E+ L+
Sbjct: 265 LFTRYQIESQIESVFQRAVQLPSGGSIVIDHTEALTSVDINSARAT--KGADIEETALNT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+ V+DFIDM N+R V +++A+++DR+ V+V+ +SR
Sbjct: 323 NLEAADEIARQLRLRDLGGLFVIDFIDMTPAKNQREVENRLREALKQDRARVQVARISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ C C+G G + ++E+ + I R++ ++ +T
Sbjct: 383 GLLEMSRQRLRPSLGESSQLVCPRCRGQGTIRSVES----LALSILRIIEEEAMKDNTQR 438
Query: 649 FIRHIP 654
+ H+P
Sbjct: 439 ILAHLP 444
>gi|344943141|ref|ZP_08782428.1| ribonuclease, Rne/Rng family [Methylobacter tundripaludum SV96]
gi|344260428|gb|EGW20700.1| ribonuclease, Rne/Rng family [Methylobacter tundripaludum SV96]
Length = 819
Score = 239 bits (611), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/448 (32%), Positives = 242/448 (54%), Gaps = 36/448 (8%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ K N+ I+ EP EA F ++ E +GF P K P
Sbjct: 26 DFDIEVPSKEQKKSNIYKGIVTHVEPSLEAAFVNY-------GAEKHGFLPFKEISPLYR 78
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
H +G ++ P K +++G +++VQ+ KE G KG LT Y L + +L+
Sbjct: 79 HLQ--EGVENDGRRPAIKDL--IKEGQEIVVQIEKEERGNKGAALTTYISLAGTYLVLMP 134
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I G R+ L+ + L+ PE GL +RT G ++EELQ DL LL W
Sbjct: 135 NNPKAGGISRRIEGETRSDLREVMAALEIPESMGLIVRTAGCGKNVEELQWDLNYLLQLW 194
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ I E + S E + P L+ + + ++D+ + ++++D+ + V
Sbjct: 195 EAI-ERSSS---------EQSAPFLVFQESNVIIRALRDHLRGNIDEILIDNEDAFKLVQ 244
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++L+ + P + +LY +PLF+++ IE +I + V LP+GGS+VI+ TEAL SI
Sbjct: 245 NFLKQVMPHFLPKAKLYQDAVPLFNRYQIESQIEVAYGREVSLPSGGSIVIDHTEALTSI 304
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GS E+ L+ NL AA +IAR+LRLRD+GG+ V+DFIDM + N++ V
Sbjct: 305 DINSARAT--KGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMSNKNQKTVE 362
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSF 626
++ A++ DR+ ++ S +SR GL+E++R+R+RPS+ PC C+G G + +E+
Sbjct: 363 NHLRDALKIDRARIQTSRISRFGLLEMSRQRMRPSLGDSTQLPCPRCKGQGTIRNVES-- 420
Query: 627 SKIEQEISRLLVSKSYNQSTFYFIRHIP 654
+ + R+L ++ + T I H+P
Sbjct: 421 --VALSVLRILEEEAMKKGTEKVIAHLP 446
Score = 38.9 bits (89), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL + +E + ++Y G+VT + P++ AFVN G
Sbjct: 4 MLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIVTHVEPSLEAAFVNYGAE 63
Query: 138 RPSLMDIK 145
+ + K
Sbjct: 64 KHGFLPFK 71
>gi|347540695|ref|YP_004848120.1| ribonuclease E [Pseudogulbenkiania sp. NH8B]
gi|345643873|dbj|BAK77706.1| ribonuclease E [Pseudogulbenkiania sp. NH8B]
Length = 1014
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 149/421 (35%), Positives = 229/421 (54%), Gaps = 41/421 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ V K N+ +I EP EA F D+ H GF P K EV
Sbjct: 26 DLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTDRH-------GFLPFK-EVSRSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
++ G + +++G +V+VQV K+ G KG LT Y L R+ +L+
Sbjct: 78 FQNYEGGRPRIQDV--------LREGMEVMVQVEKDERGNKGAALTTYISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR+I G ER LK ++A+ P+G L RT G + EELQ DL LL W
Sbjct: 130 NNPRGGGVSRRIEGEERQELKDLLAQLEVPQGMSLIARTAGIGRTFEELQWDLNYLLQLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAV--PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHE 444
+ I EG GA P+L+ + + ++DY+ + ++++D+ + +
Sbjct: 190 RAI------------EGAAGAQSGPLLILQEGSLVIRAIRDYYQPDIGEILIDTEEIHEQ 237
Query: 445 VTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALV 504
++ + P+ +RV+LY +PLF +F IE +I S+ V LP+GG++VI+ TEALV
Sbjct: 238 ARQFMAHVMPNTINRVKLYQDPVPLFSRFQIEHQIETAFSRSVQLPSGGAIVIDHTEALV 297
Query: 505 SIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRL 564
S+DVN G+ E+ L NL AA++IAR+LRLRD+GG+IV+DFIDM N+R
Sbjct: 298 SVDVNSARAT--KGADIEETALKTNLEAAEEIARQLRLRDLGGLIVIDFIDMEIQKNQRE 355
Query: 565 VYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
V ++ ++ DR+ V++ +LSR GL+E++R+R++PS+ EPC C G G + E+
Sbjct: 356 VENRLRDVLKHDRARVQMGKLSRFGLLELSRQRLQPSLGETSHEPCPRCHGIGFIRGTES 415
Query: 625 S 625
S
Sbjct: 416 S 416
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E V + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIETVGKEQRKGNIYKGVITRIEPSLEACFVDYGTD 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|254508495|ref|ZP_05120614.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus 16]
gi|219548607|gb|EED25613.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus 16]
Length = 996
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 213/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 385 RQRLSPSLAEASHHICPRCTGTGVV 409
>gi|416076877|ref|ZP_11585717.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
gi|348004378|gb|EGY44890.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. SCC1398]
Length = 963
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 198/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 412
>gi|262375075|ref|ZP_06068309.1| ribonuclease E(RNase E) [Acinetobacter lwoffii SH145]
gi|262310088|gb|EEY91217.1| ribonuclease E(RNase E) [Acinetobacter lwoffii SH145]
Length = 1159
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 150/418 (35%), Positives = 230/418 (55%), Gaps = 37/418 (8%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ + P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 YKADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK + TL P G + +RT G S EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEMLATLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQSTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N G E L+ NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V
Sbjct: 300 DINSAKST--RGQDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++++A + DR+ ++ +LSR GLME++R+R+RPS+ C C GTG V L +
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|344199258|ref|YP_004783584.1| Rne/Rng family ribonuclease [Acidithiobacillus ferrivorans SS3]
gi|343774702|gb|AEM47258.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrivorans SS3]
Length = 769
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/419 (34%), Positives = 228/419 (54%), Gaps = 37/419 (8%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + S I G EP EA F D+ E +GF P K E+ +
Sbjct: 26 DLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLK-EIAREY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
QG K + V++G +VIVQV KE +KG LT + L R+ +L+
Sbjct: 78 FLQQEQGRKRIQDL--------VREGQEVIVQVDKEERSSKGAALTTFVSLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR+I G +RT+++ + L PE G+ RT G LE LQ+DLE L W
Sbjct: 130 NNPRAGGVSRRIEGDDRTQIRQHLQLLDIPENMGVIARTAGIGQELEALQRDLEYLKQIW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ I+ D A P L+++ + ++D+F+E ++++D YH
Sbjct: 190 QAIV----------DTAAPRAAPFLIYQEGNVVVRALRDHFSEDFGEVLIDEEGAYHAAV 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P + R++ YD +PLF ++ IE++I + S+ V L +GG++VI+ TEALV++
Sbjct: 240 QFMGSMMPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVAV 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G ++ NL AA++IAR++RLRD+GG+IVVDFIDM ++R V
Sbjct: 300 DVNSGRATKGQDIAE--TAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++K A++ DR+ V++ +SR GLME++R+R+ S+ SEPC C GTG++ E +
Sbjct: 358 NKLKDALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEAT 416
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL++L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHY-REPFI 152
R + +K RE F+
Sbjct: 64 RHGFLPLKEIAREYFL 79
>gi|332284962|ref|YP_004416873.1| ribonuclease E [Pusillimonas sp. T7-7]
gi|330428915|gb|AEC20249.1| ribonuclease E [Pusillimonas sp. T7-7]
Length = 962
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/364 (36%), Positives = 209/364 (57%), Gaps = 18/364 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G ++I+QV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 95 EGQELIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELREAM 154
Query: 352 KTL-QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L P G + RT G S+EELQ DL LL W I A+ E A PI
Sbjct: 155 DQLDTPSGMSIIARTAGIGRSVEELQWDLSYLLQLWTAIDGAAR----------ENAAPI 204
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L++ + ++DY++ ++ ++++D+ + + T+++ + PD RV++Y IPLF
Sbjct: 205 LIYLESSLVIRAIRDYYSPEIGEILIDTDDIHEQATAFMSVVMPDTVQRVKMYRDDIPLF 264
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+F IE +I S+ V LP+GGS+VI+ TEALV+IDVN GS E+ + NL
Sbjct: 265 SRFQIEHQIETAYSRTVQLPSGGSVVIDHTEALVAIDVNSARST--RGSDIEETAMRTNL 322
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA ++AR+LRLRD+GG+IV+DFIDM + N+R V + ++ A+ DR+ V++ ++SR GL
Sbjct: 323 EAADEVARQLRLRDLGGLIVIDFIDMEEGKNQRAVEQRLRDALHFDRARVQMGKISRFGL 382
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFI 650
ME++R+R+RP++ C C GTG V E+S + RLL ++ + T
Sbjct: 383 MELSRQRLRPALNEGSHITCPRCNGTGVVRDAESSA----LHVLRLLQEEAMKEGTAALH 438
Query: 651 RHIP 654
+P
Sbjct: 439 AQVP 442
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FV+ G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K + RT +
Sbjct: 64 RHGFLPFKEVARSYFKEGVDVRTAR 88
>gi|289771662|ref|ZP_06531040.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289701861|gb|EFD69290.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 1181
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 198/327 (60%), Gaps = 8/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 491 LKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKSI 550
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 551 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS-------GGSSNAPS 603
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 604 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAPDLAERLSKWTSEVDVF 663
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 664 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 722
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 723 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 782
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 783 VQMTRKRVGQGLLESFSETCVHCNGRG 809
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 415 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 468
>gi|410637065|ref|ZP_11347653.1| ribonuclease E [Glaciecola lipolytica E3]
gi|410143444|dbj|GAC14858.1| ribonuclease E [Glaciecola lipolytica E3]
Length = 1011
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 146/405 (36%), Positives = 223/405 (55%), Gaps = 32/405 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK-DSKH 281
N+ I EP EA F D+ D H GF P K + + T PQG K D +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-GADRH------GFLPLK----EIAKTYFPQGYKFDGR- 84
Query: 282 TPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT 340
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I
Sbjct: 85 -PSIKDV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE 141
Query: 341 GVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALA 399
G ERT LK ++K P+G GL +RT G S EEL+ DL L+ W I E +++ A
Sbjct: 142 GDERTDLKQSLSKLELPDGMGLIVRTAGVGKSYEELEHDLNVLIRHWNAISEASETKA-- 199
Query: 400 ADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
P L+H+ + ++DY V ++++DS Y + ++Q + PD +R
Sbjct: 200 --------APFLIHQESNVIVRAIRDYLRRDVGEILIDSQEVYEKALQHIQLVRPDFANR 251
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
V+LY +PLF + IE +I + + V LP+GGS+VI+ TEA++SID+N G
Sbjct: 252 VKLYKGDVPLFSHYQIETQIESAFQREVRLPSGGSIVIDPTEAMISIDINSARAT--KGG 309
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E+ + NL AA +IAR+LRLRD GG++V+DFIDM ++R V +K+AV DR+
Sbjct: 310 DIEETAFNTNLEAADEIARQLRLRDAGGLVVIDFIDMTPVRHQREVENRLKEAVRHDRAR 369
Query: 580 VKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
+++ +SR GL+E++R+R+RPS+ C C G G + E+
Sbjct: 370 IQLGRISRFGLLEMSRQRLRPSLGESAHIVCPRCSGHGTIRGTES 414
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAD 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 61 RHGFLPLKEIAKTY-FP 76
>gi|330446423|ref|ZP_08310075.1| ribonuclease E [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490614|dbj|GAA04572.1| ribonuclease E [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 1105
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 213/387 (55%), Gaps = 32/387 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ D ++ QG + K +++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIAKDYFPANYSYQGRPNIKEV--------LKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK T
Sbjct: 98 QEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALST 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L P+G GL +RT G S EEL+ DL LL+ W + E A S P L+
Sbjct: 158 LDLPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWNAVKEAADSQP----------APFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++DSP+ + +++ + PD RV+ Y+ +PLF
Sbjct: 208 HQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLVRPDFLSRVKRYEGEVPLFSH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I++ + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 YQIESQIDSAFQREVRLPSGGSVVIDPTEALTSIDINSARAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRV 619
++R+R+ PS+ C C GTG V
Sbjct: 386 MSRQRLSPSLAEASHHVCPRCTGTGVV 412
Score = 38.9 bits (89), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEIAKDY-FP 79
>gi|407699819|ref|YP_006824606.1| RNase E [Alteromonas macleodii str. 'Black Sea 11']
gi|407248966|gb|AFT78151.1| RNase E [Alteromonas macleodii str. 'Black Sea 11']
Length = 1143
Score = 239 bits (610), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 148/420 (35%), Positives = 228/420 (54%), Gaps = 32/420 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + T P+G K + P K +++G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIARTYFPKGYK-FEGRPNIKDV--IKEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK ++K
Sbjct: 100 VIVQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKESLSKLD 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL+ LL+ W+ I A+ E P L+H+
Sbjct: 160 LPDGMGLIVRTAGVGKSYEELEWDLKVLLTHWEAISSVAE----------EREAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++D Y + ++Q + PD RV+LY +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFASRVKLYRGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+RPS+ C C G G + E+ + I R+L +S ++T +P
Sbjct: 388 RQRLRPSLGESAHHVCPRCSGHGTIRGTES----LALSILRILEEESIKENTGQIEAQLP 443
>gi|117619748|ref|YP_856763.1| ribonuclease E [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117561155|gb|ABK38103.1| ribonuclease E [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 1039
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 200/329 (60%), Gaps = 14/329 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++ P+G GL +RT G S EEL+ DL LL+ W +I + ++S +
Sbjct: 154 ALSGLTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSIHKASQSRS----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ + ++DY V ++++D+P + ++++ + PD +RV+LY +
Sbjct: 204 PVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKAHIELVRPDFLNRVKLYKGEVA 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+ F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L
Sbjct: 264 LFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTG 617
GL+E++R+R+RPS+ S C CQG G
Sbjct: 382 GLLEMSRQRLRPSLNESSSHICPRCQGQG 410
>gi|415768138|ref|ZP_11483477.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D17P-2]
gi|348658092|gb|EGY75668.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D17P-2]
Length = 834
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 198/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 412
>gi|390950507|ref|YP_006414266.1| RNAse E [Thiocystis violascens DSM 198]
gi|390427076|gb|AFL74141.1| RNAse E [Thiocystis violascens DSM 198]
Length = 1036
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/386 (33%), Positives = 223/386 (57%), Gaps = 28/386 (7%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +V+VQ+ KE G+KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 95 VREGREVVVQIDKEERGSKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGQDRNELRD 154
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+++ + PE GL +RT G ++EELQ DL+ LL WK I + EG +
Sbjct: 155 AMSQLVIPEDMGLIVRTAGVGKNVEELQWDLDYLLQLWKAIE--------TSGEGRK--A 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DY + ++V+D P + +++ + P ++ LY+ +P
Sbjct: 205 PFLIYQESDVIIRSIRDYLRADIGEIVIDDPEVFERAENFISQVMPQNLKKLRLYEDEVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + + V LP+GGS+VI+ TEAL S+D+N G+ E+ L+
Sbjct: 265 LFTRYQIESQIESAFQREVRLPSGGSIVIDHTEALTSVDINSARST--KGADIEETALNT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+ V+DFIDM N+R V + ++ A+++DR+ V+V+ +SR
Sbjct: 323 NLEAADEIARQLRLRDLGGLFVIDFIDMTPPKNQRAVEDRLRDALKQDRARVQVARISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ C C+G G + +E+ + I R++ ++ ++T
Sbjct: 383 GLLEMSRQRLRPSLGESSQRVCPRCKGQGTIRGVES----LALSILRIVEEEAMKENTQR 438
Query: 649 FIRHIP----------KRRKHLKLEY 664
+ +P KRR L +E+
Sbjct: 439 IVAQLPVSVATFLLNEKRRAILDIEH 464
>gi|444337143|ref|ZP_21151162.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
gi|444348455|ref|ZP_21156115.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
gi|443546968|gb|ELT56550.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. S23A]
gi|443547476|gb|ELT56962.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. SCC4092]
Length = 834
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 198/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 412
>gi|416104397|ref|ZP_11589866.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
gi|348007333|gb|EGY47650.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype c
str. SCC2302]
Length = 831
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 198/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 379 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 409
>gi|334704952|ref|ZP_08520818.1| ribonuclease E [Aeromonas caviae Ae398]
Length = 1045
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 199/329 (60%), Gaps = 14/329 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 91 VREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 150
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++ P+G GL +RT G S EEL+ DL LL+ W +I H S +A
Sbjct: 151 ALSGLTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQQRSA-------- 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ + ++DY V ++++D+P + S+++ + PD +RV+LY +
Sbjct: 201 PVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKSHIELVRPDFLNRVKLYKGDVA 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+ F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L
Sbjct: 261 LFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTG 617
GL+E++R+R+RPS+ S C CQG G
Sbjct: 379 GLLEMSRQRLRPSLNESSSHICPRCQGQG 407
>gi|260912695|ref|ZP_05919181.1| ribonuclease E [Pasteurella dagmatis ATCC 43325]
gi|260633073|gb|EEX51238.1| ribonuclease E [Pasteurella dagmatis ATCC 43325]
Length = 986
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/405 (34%), Positives = 224/405 (55%), Gaps = 39/405 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVYQGRPNIRDI-----------LS 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKDAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L+ P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLEVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSQKVYEKAKAHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR GL
Sbjct: 324 EAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
+E++R+R+ PS+ C CQGTG++ E+L S ++ +E
Sbjct: 384 LEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSILRLIEE 428
>gi|408531899|emb|CCK30073.1| hypothetical protein BN159_5694 [Streptomyces davawensis JCM 4913]
Length = 1336
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 694 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 753
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 754 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS----------GNAPT 803
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 804 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWSTIHGYVSHVAPDLAERLSKWTSEVDVF 863
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 864 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 922
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 923 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 982
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 983 VQMTRKRVGQGLLESFSETCVHCNGRG 1009
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 618 QIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 671
>gi|283457946|ref|YP_003362549.1| ribonuclease G and E [Rothia mucilaginosa DY-18]
gi|283133964|dbj|BAI64729.1| ribonuclease G and E [Rothia mucilaginosa DY-18]
Length = 1288
Score = 239 bits (610), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 193/326 (59%), Gaps = 9/326 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I K
Sbjct: 510 GDSVLVQVTKDPIGHKGARLTSQVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKD 569
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
PEG G+ +RT A G S EEL D+ L + W+ I E AKS + A P +L+
Sbjct: 570 KLPEGAGVIVRTAAEGASEEELTHDINRLRAQWEEIQEKAKSRKVLA--------PEMLY 621
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + V+D FNE M+V + + +Y+ +APDL R++ +D LFD +
Sbjct: 622 QEPDLMIKTVRDVFNEDFTAMIVQGENAWDSIEAYVTYVAPDLVSRLQQWDGDDDLFDHY 681
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 682 RINEQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 740
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 741 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQM 800
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRV 619
TRKR+ + + SEPC C G G V
Sbjct: 801 TRKRLGTGLLEVFSEPCEHCAGRGLV 826
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED L E + + + +VYLG V ++P+M AFV+IG R +++
Sbjct: 431 QIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVL 484
>gi|389579683|ref|ZP_10169710.1| ribonuclease, Rne/Rng family [Desulfobacter postgatei 2ac9]
gi|389401318|gb|EIM63540.1| ribonuclease, Rne/Rng family [Desulfobacter postgatei 2ac9]
Length = 485
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 148/403 (36%), Positives = 229/403 (56%), Gaps = 32/403 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I+ EP +A F D+ G NGF K+E+ H + Q + + +
Sbjct: 41 NIYKGIVTRVEPSLQAVFVDYGAG-------KNGFL-QKNEI----HPDYFQEIEKNDRS 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV 342
+ ++KG ++IVQV K+ + KG LT Y L RF +L+ + GVSRKI
Sbjct: 89 ----LFNLIKKGQEMIVQVAKDPINLKGAMLTTYISLPGRFGVLMPGNNTRGVSRKIVEE 144
Query: 343 -ERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER RL I K L PEGFG+ +RT G + L DL L+ WKNI + A
Sbjct: 145 DERKRLVGILKDLTIPEGFGMIVRTAGKGATKTLLTSDLRYLMRVWKNIDKLA------- 197
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+E P LL++ + ++DYF + ++++D+P TY EV ++++ IAP + V
Sbjct: 198 ---MENQAPCLLYKEQSLAVRSLRDYFTTDITEILIDNPDTYKEVLNFIEMIAPKQKNIV 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
L+ P+F K+ +EE+I+++ + VPL +GG LVIEQTEALVSIDVN G +S
Sbjct: 255 RLFKSEKPIFTKYQLEEQISSIYKREVPLKSGGFLVIEQTEALVSIDVNSGKST--KKNS 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA+++AR+LRLRD+GG+IVVDFIDM + +K + + +KK ++ D++
Sbjct: 313 IEETAFHTNLEAAEEVARQLRLRDMGGLIVVDFIDMKERRHKADITKTMKKYLKTDKAKT 372
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALE 623
KV ++ GL+E++R+R+R S+T+ + C C G G ++E
Sbjct: 373 KVGGITAFGLLEMSRQRIRHSITYGAYDTCKHCNGRGMTPSVE 415
>gi|319943486|ref|ZP_08017768.1| ribonuclease E [Lautropia mirabilis ATCC 51599]
gi|319743301|gb|EFV95706.1| ribonuclease E [Lautropia mirabilis ATCC 51599]
Length = 1068
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 147/409 (35%), Positives = 220/409 (53%), Gaps = 38/409 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ ++ EP EA F ++ E H GF P S+S D P +D
Sbjct: 40 NIYKGVVTRVEPSLEACFVNYGEDRH-------GFLPFKEISRSYFRQDVEGGKPLRIQD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+ +G ++IVQV KE G KG LT L R+ +L+ + R G VSR
Sbjct: 93 V-----------ISEGQELIVQVEKEERGNKGAALTTMISLAGRYVVLMPNNPRGGGVSR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G +R L+ LQ P G L RT G S+EELQ DL LL W+ I AKSA
Sbjct: 142 RIEGEDRQELREAMDKLQVPSGMSLIARTAGIGRSVEELQWDLNYLLQLWQAIESAAKSA 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
A L+++ + ++DYF + ++++D+ Y + T ++ + PD
Sbjct: 202 PGA----------FLIYQESSLVIRAIRDYFTADIGEVLIDTEDIYQQATQFMSYVMPDY 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
RV+ Y PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN
Sbjct: 252 VARVKYYRDATPLFSRFQIEHQIETAYSRVVPLPSGGAIVIDHTEALVAIDVNSARAT-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
GS E+ N+ AA+++AR++RLRD+GG+IV+DFIDM N+R V + +K+A+ D
Sbjct: 310 RGSDIEETAFRTNMEAAEEVARQMRLRDLGGLIVIDFIDMESSRNQREVEQCLKEALSLD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
R+ V+ ++SR GLME++R+R+RP++ C C GTG + +E+S
Sbjct: 370 RARVQTGKISRFGLMELSRQRLRPALNEGTHITCPRCNGTGVIRDIESS 418
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 39/69 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ ++L+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATHSEELRVAIVDGQRLIDIDIESAGRESRKSNIYKGVVTRVEPSLEACFVNYGED 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|456390707|gb|EMF56102.1| hypothetical protein SBD_3416 [Streptomyces bottropensis ATCC
25435]
Length = 1262
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 604 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 663
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AK+ G P
Sbjct: 664 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKN----------GNAPT 713
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R++ + + +F
Sbjct: 714 LLYGEPDMTVRVVRDIFNEDFSKVIVSGEEAWETIHGYVSHVAPDLAERLQKWTSEVDVF 773
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 774 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 832
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 833 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 892
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 893 VQMTRKRVGQGLLESFSETCVHCNGRG 919
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKL 123
+ +++ V V+++ S Q I VLED LVE + +S +VYLG V +
Sbjct: 504 EAEFLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNV 562
Query: 124 VPNMGGAFVNIGNSRPSLM 142
+P+M AF++IG R +++
Sbjct: 563 LPSMEAAFIDIGKGRNAVL 581
>gi|416086238|ref|ZP_11587401.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
gi|348009969|gb|EGY50064.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype b
str. I23C]
Length = 831
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 198/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 379 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 409
>gi|444333600|ref|ZP_21149363.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
gi|443551496|gb|ELT59337.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype a
str. A160]
Length = 821
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 198/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 81 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 140
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 141 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 190
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 191 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 250
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 251 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 308
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 309 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 368
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 369 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 399
>gi|126173939|ref|YP_001050088.1| ribonuclease [Shewanella baltica OS155]
gi|386340698|ref|YP_006037064.1| ribonuclease, Rne/Rng family [Shewanella baltica OS117]
gi|125997144|gb|ABN61219.1| RNAse E [Shewanella baltica OS155]
gi|334863099|gb|AEH13570.1| ribonuclease, Rne/Rng family [Shewanella baltica OS117]
Length = 1144
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 196/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++ V+GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQ---------VKGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 400 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES 435
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|288928444|ref|ZP_06422291.1| ribonuclease G [Prevotella sp. oral taxon 317 str. F0108]
gi|288331278|gb|EFC69862.1| ribonuclease G [Prevotella sp. oral taxon 317 str. F0108]
Length = 524
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 144/424 (33%), Positives = 232/424 (54%), Gaps = 21/424 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + + + +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGFERDAFLHYLD----LGSQFDSYAKYLKQVQSDRKKLYPFAK-- 99
Query: 279 SKHTPGEKTWLQVQ----KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ P K VQ G +V+VQ+VKE + TKGP LT R+ ILI D++
Sbjct: 100 ASRLPDLKKDGSVQTTLTSGQEVLVQIVKEPISTKGPRLTCELSFAGRYLILIPFNDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L W+ +E
Sbjct: 160 VSSKIKSGEERARLKQLIHSIKPKNCGVIVRTVAEGKRVAELDAELKTLTKYWEEAIEKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ P L+ + +++++D FN + + V+ + EV Y+ IA
Sbjct: 220 QKTQ---------KRPQLVFEETSRAVALLRDLFNPTYENIYVNDEDVFKEVKHYVSMIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
PD D V+LY ++P+FD FNI ++I + K V +G L+IE TEAL +DVN G+
Sbjct: 271 PDKVDIVKLYSGKVPIFDNFNITKQIKSSFGKAVNYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A L+VNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 TRSEKGQEANA-LEVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEI 633
++DR+ + LS+ GLM+ITR+RVRP++ + E C C G G++++ ++E +I
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDVSVDETCPTCFGKGKIKSSILFTDQLEGKI 449
Query: 634 SRLL 637
RL+
Sbjct: 450 DRLV 453
Score = 45.8 bits (107), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+KLVE EP + + +VY+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKKLVEYQSEPREVSFSVGNVYMAKVKKLMPGLNACFVDVGFERDAFL---HY 70
>gi|198283981|ref|YP_002220302.1| Rne/Rng family ribonuclease [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218665963|ref|YP_002426618.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198248502|gb|ACH84095.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
53993]
gi|218518176|gb|ACK78762.1| ribonuclease, Rne/Rng family [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 782
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 153/467 (32%), Positives = 245/467 (52%), Gaps = 51/467 (10%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + S I G EP EA F D+ E +GF P K E+ +
Sbjct: 26 DLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLK-EIAREY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
QG K + V++G ++IVQV KE +KG LT + L R+ +L+
Sbjct: 78 FQQQEQGRKRIQDL--------VREGQEIIVQVDKEERSSKGAALTTFVSLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR+I G +RT+++ + L PE G+ RT G LE LQ+DLE L W
Sbjct: 130 NNPRAGGVSRRIEGEDRTQIRQHLQLLDIPENMGVIARTAGIGQELEALQRDLEYLKQIW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ I+ D A P L+++ + ++D+F+E + ++++D Y+
Sbjct: 190 QAIV----------DTAAPRAAPFLIYQEGNVVVRALRDHFSEDIGEVLIDEEGAYNAAV 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P + R++ YD +PLF ++ IE++I + S+ V L +GG++VI+ TEALV++
Sbjct: 240 QFMGSMMPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALVAV 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G ++ NL AA++IAR++RLRD+GG+IVVDFIDM ++R V
Sbjct: 300 DVNSGRATKGQDIAE--TAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSF 626
++K+A++ DR+ V++ +SR GLME++R+R+ S+ SEPC C GTG++ E +
Sbjct: 358 NKLKEALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEAT- 416
Query: 627 SKIEQEISRLLVSKSYNQSTFYFIRHIP----------KRRKHLKLE 663
+ RLL + +P KRR+ L+LE
Sbjct: 417 ---SMHVLRLLYEECMKTGAAEVECQVPVDVAVYLLNEKRRQILELE 460
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL++L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 64 RHGFLPLKEIAREYF 78
>gi|336311180|ref|ZP_08566147.1| ribonuclease E [Shewanella sp. HN-41]
gi|335865396|gb|EGM70422.1| ribonuclease E [Shewanella sp. HN-41]
Length = 1052
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 135/366 (36%), Positives = 208/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 27 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 86
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E A++ +GA
Sbjct: 87 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEAAQT---------KGA- 136
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 137 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 196
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 197 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 254
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 255 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 314
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RPS+ + C C G G + + E+ + I RL+ ++ ++T
Sbjct: 315 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES----LALSILRLMEEEAIKENTSQ 370
Query: 649 FIRHIP 654
+P
Sbjct: 371 IEAIVP 376
>gi|302545435|ref|ZP_07297777.1| putative ribonuclease, Rne/Rng family domain protein [Streptomyces
hygroscopicus ATCC 53653]
gi|302463053|gb|EFL26146.1| putative ribonuclease, Rne/Rng family domain protein [Streptomyces
himastatinicus ATCC 53653]
Length = 953
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 351 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 410
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL +D++ L + W+ I + AKS G P
Sbjct: 411 LKKIVPEDAGVIVRTAAEGASEDELARDVQRLQAQWEEIKKKAKS----------GNAPT 460
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ ++ + +F
Sbjct: 461 LLYGEPDMTVRVVRDIFNEDFSKVIVSGEDAWQTIHGYVSHVAPDLVDRLQKWNSDVDVF 520
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 521 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 579
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 580 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 639
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 640 VQMTRKRVGQGLLESFSESCVHCNGRG 666
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 254 FLARREAVERVMVVRQNGERTQ-IGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVLPS 312
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 313 MEAAFVDIGKGRNAVL 328
>gi|429726208|ref|ZP_19261014.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 473 str.
F0040]
gi|429147453|gb|EKX90479.1| S1 RNA binding domain protein [Prevotella sp. oral taxon 473 str.
F0040]
Length = 526
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 206/332 (62%), Gaps = 9/332 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
V G +V+VQ+VKE + TKGP LT R+ +LI D++ VS KI + ER RLK
Sbjct: 116 VSVGQEVLVQIVKEPISTKGPRLTCEISFAGRYLVLIPFTDKVSVSTKIKSDAERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P+GFG+ IRTVA G + EL ++L L S W++ + + + A + ++ A
Sbjct: 176 LIHSIKPKGFGVIIRTVAEGRRVAELDQELRILESRWESAIANIQQA-----DSLDKAT- 229
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+ +++D FN + ++ Y EV Y+ IAP+ D V+LY +P+
Sbjct: 230 -LVYEETSRTVGLLRDLFNPSFSSIHINDKSVYEEVRDYVTLIAPEAKDIVKLYKGNVPI 288
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F++ ++I + L + V +G ++IE TEAL +D+N G+ +E LDVN
Sbjct: 289 FDNFSVTKQIKSSLGRTVTYKHGAYMIIEHTEALHVVDINSGNRS-KSVEGQEVNALDVN 347
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDMA N++ +YE + + +++DR+ + LS+ G
Sbjct: 348 LGAADELARQLRLRDMGGIIVVDFIDMAQPENRQQLYERMVENMKKDRARHNILPLSKFG 407
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA 621
LM+ITR+RVRP++ + E C C GTG++++
Sbjct: 408 LMQITRQRVRPAMDVKVEEECPSCGGTGKIKS 439
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE E ++YL V K++P + FVN+G R + + HY
Sbjct: 16 IALLEDKRLVEFQQEGRSEQFAVGNIYLAKVRKIMPGLNACFVNVGYERDAFL---HY 70
>gi|119775124|ref|YP_927864.1| ribonuclease E [Shewanella amazonensis SB2B]
gi|119767624|gb|ABM00195.1| RNAse E [Shewanella amazonensis SB2B]
Length = 1141
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 127/336 (37%), Positives = 194/336 (57%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 121 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 180
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G ELQ DL+ LL W I E ++S G
Sbjct: 181 AMADLEVPNGMGLIVRTAGVGKDAAELQWDLKVLLRHWDAIKEASES----------GPG 230
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ + ++DY V ++++D P+ + + ++ + PD +RV+ Y +P
Sbjct: 231 PMLIHQESNVIVRAIRDYLRRDVGEILIDHPKIFEQAKQHIATVRPDFVERVKQYKAEVP 290
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEA+ SID+N G E+ L+
Sbjct: 291 LFTHYQIESQIESAFQREVRLPSGGSIVIDPTEAMTSIDINSARAT--KGGDIEETALNT 348
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ V++ +SR
Sbjct: 349 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVHQDRARVQLGRISRF 408
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + E+
Sbjct: 409 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRGTES 444
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 21 LKKNDVTMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSL 80
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 81 EAAFVDYGAERHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 120
>gi|160874865|ref|YP_001554181.1| ribonuclease [Shewanella baltica OS195]
gi|378708112|ref|YP_005273006.1| ribonuclease, Rne/Rng family [Shewanella baltica OS678]
gi|418026180|ref|ZP_12665152.1| ribonuclease, Rne/Rng family [Shewanella baltica OS625]
gi|160860387|gb|ABX48921.1| ribonuclease, Rne/Rng family [Shewanella baltica OS195]
gi|315267101|gb|ADT93954.1| ribonuclease, Rne/Rng family [Shewanella baltica OS678]
gi|353534501|gb|EHC04071.1| ribonuclease, Rne/Rng family [Shewanella baltica OS625]
Length = 1158
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 196/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++ V+GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQ---------VKGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 400 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES 435
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|153000232|ref|YP_001365913.1| ribonuclease [Shewanella baltica OS185]
gi|151364850|gb|ABS07850.1| ribonuclease, Rne/Rng family [Shewanella baltica OS185]
Length = 1148
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 196/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++ V+GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQ---------VKGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 400 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES 435
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|217973819|ref|YP_002358570.1| ribonuclease, Rne/Rng family [Shewanella baltica OS223]
gi|217498954|gb|ACK47147.1| ribonuclease, Rne/Rng family [Shewanella baltica OS223]
Length = 1154
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 196/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++ V+GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQ---------VKGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 400 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES 435
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|297172315|gb|ADI23292.1| ribonucleases G and E [uncultured actinobacterium HF0770_13M05]
Length = 940
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/393 (35%), Positives = 220/393 (55%), Gaps = 33/393 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGE-KTWLQ--VQK 293
EA F DF D H GF P K E+ S T +++ TP + + +Q + +
Sbjct: 51 EAAFVDFG-ADRH------GFLPFK-EI---SRTYF-----NTRSTPNQGRVNIQDVINE 94
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G + +VQV KE G KG L+ + L R+ +L+ + R G +SR+I G ER L+
Sbjct: 95 GQECLVQVEKEERGNKGAALSTFMSLAGRYMVLMPNNPRSGGISRRIEGEERDSLRDAMS 154
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L+ P+G G+ IRT S +ELQ DL+ LL W+ I K + P L
Sbjct: 155 ELEFPDGMGIIIRTAGVDKSADELQWDLDYLLQLWEAIQRAEK----------DNRAPAL 204
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+++ + ++D + ++++DS Y E +++++ P DR++LY PLF
Sbjct: 205 IYQETNVIVRTIRDNLRSDISEVLIDSEDAYKEAADFIEEVMPHYRDRIKLYADSTPLFS 264
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
++ IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L NL
Sbjct: 265 RYQIESQIESAFQHEVKLPSGGSVVIDPTEALVSIDINSARAT--KGADIEETALTTNLE 322
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA+++AR+LRLRD+GG+IV+DFIDM N+R V V++A+E DR+ ++ +SR GL
Sbjct: 323 AAEEVARQLRLRDVGGLIVIDFIDMLASRNQRAVENRVREALETDRARTQLGRISRFGLF 382
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
E++R+R+RPS+ + SE C C G GR+ +E+
Sbjct: 383 EMSRQRLRPSLEEITSEVCPRCSGQGRIRDVES 415
>gi|262370011|ref|ZP_06063338.1| ribonuclease E [Acinetobacter johnsonii SH046]
gi|262315050|gb|EEY96090.1| ribonuclease E [Acinetobacter johnsonii SH046]
Length = 1156
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 150/418 (35%), Positives = 231/418 (55%), Gaps = 37/418 (8%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAG-------RQGFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ + P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 YQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK + +L P G + +RT G S EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQNTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQIDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GS E L+ NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V
Sbjct: 300 DINSAKST--RGSDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++++A + DR+ ++ +LSR GLME++R+R+RPS+ C C GTG V L +
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|373949092|ref|ZP_09609053.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183]
gi|386325070|ref|YP_006021187.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175]
gi|333819215|gb|AEG11881.1| ribonuclease, Rne/Rng family [Shewanella baltica BA175]
gi|373885692|gb|EHQ14584.1| ribonuclease, Rne/Rng family [Shewanella baltica OS183]
Length = 1149
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 196/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V +G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 112 VSEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 171
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G GL +RT G EL+ DL+ L W I E ++ V+GA
Sbjct: 172 AMADLEVPAGMGLIVRTAGVGKESAELKWDLKVLQHHWAAITEASQ---------VKGA- 221
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD +RV+LY+ +P
Sbjct: 222 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIFEEAKQHIALVRPDFVERVKLYEAEVP 281
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 282 LFTHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 339
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 340 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVHHDRARVQLGRISRF 399
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + + E+
Sbjct: 400 GLMEMSRQRLRPSLEESAAHICPRCHGQGTIRSTES 435
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 68 ISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNM 127
+ K++ + +LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++
Sbjct: 12 LKKNDVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKSNIYKGKITRVEPSL 71
Query: 128 GGAFVNIGNSRPSLMDIKHYREPFIFP---PFRCRTKKQEV 165
AFV+ G R + +K + FP F+ R +EV
Sbjct: 72 EAAFVDYGADRHGFLPLKEIAREY-FPKGYSFQGRPNIKEV 111
>gi|21221057|ref|NP_626836.1| hypothetical protein SCO2599 [Streptomyces coelicolor A3(2)]
gi|6983741|emb|CAB75380.1| conserved hypothetical protein SCC88.10c [Streptomyces coelicolor
A3(2)]
Length = 1340
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 198/327 (60%), Gaps = 8/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 653 LKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKSI 712
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 713 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS-------GGSSNAPS 765
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 766 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDDAWQTIHGYVSHVAPDLAERLSKWTSEVDVF 825
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 826 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 884
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 885 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 944
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 945 VQMTRKRVGQGLLESFSETCVHCNGRG 971
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 577 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 630
>gi|381399378|ref|ZP_09924477.1| ribonuclease, Rne/Rng family [Microbacterium laevaniformans OR221]
gi|380773277|gb|EIC06882.1| ribonuclease, Rne/Rng family [Microbacterium laevaniformans OR221]
Length = 800
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 195/329 (59%), Gaps = 11/329 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L ++ G +V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK
Sbjct: 322 LALKSGDRVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPGGAMNGISRKLPDTERARLK 381
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K + PE G+ +RT A G + ++L +D++ L + W++I +
Sbjct: 382 RILKEVLPESSGVIVRTAAEGATEDQLTRDVQRLTAQWEHISSQVEKIG----------A 431
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LLH + IV+D FNE KM++ Y +T+YL +APDL +RVE Y+
Sbjct: 432 PALLHSEPDLLVKIVRDVFNEDFSKMLIQGEDAYQTITAYLAGVAPDLLERVEKYEDDQD 491
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
FD+F + E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 492 PFDRFRVTEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKN 550
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++
Sbjct: 551 NLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLSRDRTKHQVAEVTSL 610
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTG 617
GL+++TRK++ + SE C C G G
Sbjct: 611 GLVQMTRKKLGLGLLETFSEACEVCAGRG 639
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 19/137 (13%)
Query: 24 AYEDTVKPDMPEKSNNEKDEAMILDSDNQKFQDTESLLPEK------------------G 65
A T + D P + + + A+ L ++ Q+ + + L +K
Sbjct: 166 AGSSTAEDDAPREQSQPRRRAVELITEPQRIKGSTRLEAKKQRRRDGREAGRRRTVVTEA 225
Query: 66 SLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVP 125
+++ V +++ S +Q IAVLED LVE + + + +VYLG V ++P
Sbjct: 226 EFLARREAVDRDMIVRSKNGRIQ-IAVLEDNVLVEHYVARSQESSLIGNVYLGRVQNVLP 284
Query: 126 NMGGAFVNIGNSRPSLM 142
+M AFV+IG R +++
Sbjct: 285 SMEAAFVDIGRGRNAVL 301
>gi|374989880|ref|YP_004965375.1| ribonuclease, Rne/Rng family [Streptomyces bingchenggensis BCW-1]
gi|297160532|gb|ADI10244.1| ribonuclease, Rne/Rng family [Streptomyces bingchenggensis BCW-1]
Length = 1410
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 800 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 859
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL +D++ L + W+ I + AK+ G P
Sbjct: 860 LKKIVPEDAGVIVRTAAEGASEDELSRDVQRLQAQWEEIQKKAKN----------GGAPT 909
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ + + +F
Sbjct: 910 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDGAWDTIHGYVSHVAPDLADRLQRWTSDVDVF 969
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 970 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 1028
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1029 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1088
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SEPC C G G
Sbjct: 1089 VQMTRKRVGQGLLESFSEPCVHCNGRG 1115
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + +SN +VYLG V ++P+
Sbjct: 703 FLARREAVERVMVVRQNGERTQ-IGVLEDNVLVEHFVNKEQSNSYVGNVYLGKVQNVLPS 761
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 762 MEAAFVDIGKGRNAVL 777
>gi|421760898|ref|ZP_16197709.1| ribonuclease E [Bartonella bacilliformis INS]
gi|411174129|gb|EKS44165.1| ribonuclease E [Bartonella bacilliformis INS]
Length = 771
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 171/551 (31%), Positives = 273/551 (49%), Gaps = 57/551 (10%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V++D K+ E E ++YL VT++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVQDNKIEEFDFESEHKKQLKGNIYLARVTRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G+ R + + P R A EE AV ++ND
Sbjct: 61 YGSGRHGFLTFSEIHPDYYQIPVADRL--------ALLEKEEKAVAFEND---------- 102
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
DDLV EE + D + ++ K N I G F + + +D E
Sbjct: 103 -----DDLV-------EEINQDKRNSKKIKKQKNSRTIAAGIENDIFSESIT----MDDE 146
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
S S D+ P T SK K +++ ++VQV+KE G KG L
Sbjct: 147 SFDMLTS------DAFEEKP--TYYSKQERQYKIQEVIKRRQILLVQVIKEERGNKGAAL 198
Query: 314 TAYPKLRSRFWILITSCDR-IGVSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G+SRKIT + R RLK I K L+ P+G G+ +RT
Sbjct: 199 TTYLSLAGRYSVLMPNTARGGGISRKITNTQDRNRLKEIVKGLEVPKGMGIILRTAGENR 258
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L+ W E +S L + P L++ ++D +N+
Sbjct: 259 TKAEVKRDYEYLMRLW----ETVRSLTL------KSIAPCLVYEESSLIKRSIRDLYNKN 308
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F + IE +++ +L +V L
Sbjct: 309 ISEILVSGDQGYREAKDFMRMLMPSYAKVVQPYRDPIPIFTRSGIEIQLDKILHPQVSLK 368
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+ID+N G H S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 369 SGGYLVINQTEALVAIDINSGRSTKEH--SVEKTALQTNLEAAEEIARQLRLRDLAGLIV 426
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDM + N +LV +++K ++ DR+ ++V +S GL+E++R+R+R SV ++ C
Sbjct: 427 IDFIDMLEKRNIKLVEKKLKDCLKSDRARIQVGHISNFGLLEMSRQRIRVSVLESTTQSC 486
Query: 611 TCCQGTGRVEA 621
C GTG + +
Sbjct: 487 PHCSGTGNIRS 497
>gi|302560669|ref|ZP_07313011.1| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces griseoflavus Tu4000]
gi|302478287|gb|EFL41380.1| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces griseoflavus Tu4000]
Length = 556
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 198/327 (60%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 200 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 259
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W+ I + +K+ A G+ P
Sbjct: 260 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIKKKSKNGA--------GSAPT 311
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + V Y+ +APDL +R+ + + +F
Sbjct: 312 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWETVHGYVSHVAPDLAERLSRWTSEVDVF 371
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 372 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 430
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 431 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 490
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 491 VQMTRKRVGQGLLESFSETCVHCNGRG 517
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 124 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 177
>gi|350531919|ref|ZP_08910860.1| ribonuclease E [Vibrio rotiferianus DAT722]
Length = 1011
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFINRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|82702193|ref|YP_411759.1| ribonuclease [Nitrosospira multiformis ATCC 25196]
gi|82410258|gb|ABB74367.1| RNAse E [Nitrosospira multiformis ATCC 25196]
Length = 977
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 153/455 (33%), Positives = 240/455 (52%), Gaps = 54/455 (11%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSK------- 261
D D+ K N+ ++I EP EA F ++ GE +GF P K
Sbjct: 26 DLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEY-------GGERHGFLPFKEISRSYL 78
Query: 262 SEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRS 321
E PD +D+ H +G ++IVQV K+ GTKG LT Y L
Sbjct: 79 KESPDPGRVR----VQDALH-----------EGQELIVQVDKDERGTKGAALTTYISLAG 123
Query: 322 RFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDL 379
R+ +L+ + R G VSR+I G +R L+ + L P+G + RT G + EELQ DL
Sbjct: 124 RYLVLMPNNPRGGGVSRRIEGEDRAELRDVMSHLNIPQGMSIIARTAGIGRTEEELQWDL 183
Query: 380 EGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSP 439
LL W+ I + +K G GA L+++ + ++DYFN+++ ++++D+
Sbjct: 184 NYLLQLWRAIEDASK--------GQSGA--FLIYQESSLVIRAIRDYFNQEIGEILIDTE 233
Query: 440 RTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQ 499
Y + ++ + P RV+LY +PLF +F IE +I S++V LP+GG++VI+
Sbjct: 234 SIYEQACQFMGHVMPGNVARVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDH 293
Query: 500 TEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADD 559
TEALVS+DVN GS E+ L NL AA +IAR+LRLRD+GG++V+DFIDM
Sbjct: 294 TEALVSVDVNSARAT--RGSDIEQTALATNLEAADEIARQLRLRDLGGLVVIDFIDMEVS 351
Query: 560 SNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
N+R V + A+ DR+ V++ ++SR GL+E++R+R+RPS+ C C GTG +
Sbjct: 352 RNQREVENRLHDALRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHI 411
Query: 620 EALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
++S I R++ ++ ++T +P
Sbjct: 412 RGTDSSAL----HILRIIQEEAMKENTAVLHAQVP 442
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T+L P++ AFV G
Sbjct: 4 MLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEYGGE 63
Query: 138 RPSLMDIKHYREPFI 152
R + K ++
Sbjct: 64 RHGFLPFKEISRSYL 78
>gi|50083690|ref|YP_045200.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter sp. ADP1]
gi|49529666|emb|CAG67378.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter sp. ADP1]
Length = 1138
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ +L P G + +RT G S EELQ DL+ LL W I + S G
Sbjct: 152 MLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLWSQIQSTSNS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFAIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|381196988|ref|ZP_09904329.1| ribonuclease E [Acinetobacter lwoffii WJ10621]
Length = 1160
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 150/418 (35%), Positives = 231/418 (55%), Gaps = 37/418 (8%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ + P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 YKADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK + +L P G + +RT G S EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQNTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQIDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GS E L+ NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V
Sbjct: 300 DINSAKST--RGSDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++++A + DR+ ++ +LSR GLME++R+R+RPS+ C C GTG V L +
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|254362479|ref|ZP_04978587.1| ribonuclease E [Mannheimia haemolytica PHL213]
gi|153094071|gb|EDN74983.1| ribonuclease E [Mannheimia haemolytica PHL213]
Length = 977
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 150/430 (34%), Positives = 233/430 (54%), Gaps = 42/430 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 37 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPSDYVFNGRPNIKD 89
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 90 I-----------IQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 138
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 139 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 198
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 199 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDF 248
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 249 INRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 306
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 307 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 366
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
R+ ++ + +SR GL+E++R+R+ PS++ S C CQGTG+V E+ I I RL
Sbjct: 367 RARIQFARISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNES----IALSILRL 422
Query: 637 LVSKSYNQST 646
L ++ ++T
Sbjct: 423 LEEEAIKENT 432
>gi|317124517|ref|YP_004098629.1| RNAse G [Intrasporangium calvum DSM 43043]
gi|315588605|gb|ADU47902.1| RNAse G [Intrasporangium calvum DSM 43043]
Length = 1012
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 201/342 (58%), Gaps = 14/342 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
+ G V+VQV K+ +G KG LT+ L R+ + + + G+SRK+ ER RLK I
Sbjct: 481 LSSGQSVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPNSSMTGISRKLPDTERARLKKI 540
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAAL------------ 398
+ + P+ G+ +RT A G S EEL+ D+E L TW++I A+ +
Sbjct: 541 LREVVPDSAGVIVRTAAEGASEEELRADVERLSRTWEDIRARAELSGTPRAGKSKGRKKN 600
Query: 399 -AADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLC 457
+ G+ P+LLH T+ +++D FNE K++VV + ++E+ Y+ +APDL
Sbjct: 601 GSPGSAPTGSAPLLLHGEPDLTVRVIRDVFNEDFKQLVVAGDQAWNEIHPYISSVAPDLA 660
Query: 458 DRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGH 517
DRV + LF ++E++ + ++V LP+GGSLVI++TEA+ +DVN G G
Sbjct: 661 DRVSRWTAEEDLFTHHRVDEQLAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGS 719
Query: 518 GSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDR 577
G + E+ + NL AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR
Sbjct: 720 GGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVVRRLLECLGRDR 779
Query: 578 SMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+ +V+E++ GL+++TRKRV + + SE C C G G V
Sbjct: 780 TKHQVAEVTSLGLVQMTRKRVGSGLIEVFSETCEHCNGRGYV 821
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q + VLED LVE ++ + ++YLG V ++P+
Sbjct: 383 FLARREAVDRVMVVRNKEGRTQ-MGVLEDGVLVEHYIDQATNVSMAGNIYLGRVQNVLPS 441
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 442 MEAAFVDIGKGRNAVL 457
>gi|358011202|ref|ZP_09143012.1| ribonuclease E [Acinetobacter sp. P8-3-8]
Length = 1132
Score = 239 bits (609), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 233/422 (55%), Gaps = 37/422 (8%)
Query: 212 HDGDDFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEV 264
H DFD+ + + I G EP EA F ++ G GF S E+
Sbjct: 22 HRLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREI 73
Query: 265 PDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFW 324
+ + + P+ T + + + +GT+++VQV KE G KG L+ Y L R+
Sbjct: 74 ANTYYKADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTYISLAGRYL 125
Query: 325 ILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGL 382
+L+ + + G +SR+I+G R LK + +L P G + +RT G S EELQ DL+ L
Sbjct: 126 VLMPNNPKGGGISRQISGSVREELKEMLASLNTPRGMSVIVRTAGIGRSQEELQLDLQHL 185
Query: 383 LSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTY 442
L W I A S G P+L+H+ G ++DY + V ++++DS + Y
Sbjct: 186 LDLWAQIQSTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVTEILIDSEQAY 235
Query: 443 HEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEA 502
+E ++++ + P+ D+++ Y PLF F IE +I + V LP+GGS+VI+QTEA
Sbjct: 236 NEAYNFVKAVMPNQVDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEA 295
Query: 503 LVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNK 562
LVSID+N GH E+ L NL AA++I+R+LRLRDIGG++V+DFIDM + N+
Sbjct: 296 LVSIDINSAKSTRGHDV--EETALSTNLEAAEEISRQLRLRDIGGLVVIDFIDMTKERNQ 353
Query: 563 RLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEAL 622
R+V +++++ + DR+ ++ +LSR GLME++R+R+RPS+ C C GTG V L
Sbjct: 354 RMVEAKLRESTQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDL 413
Query: 623 ET 624
+
Sbjct: 414 RS 415
>gi|371776776|ref|ZP_09483098.1| ribonuclease G [Anaerophaga sp. HS1]
Length = 519
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 146/403 (36%), Positives = 230/403 (57%), Gaps = 17/403 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDS-HTSHPQGTK 277
V +++ +N + +D G + F +L+ + +K++ S H P+
Sbjct: 46 VKKIMPGLNAAFVDVGYEKDAFLHYLDLGPQFLSLNKYIQQAKTKKGSISLHKFKPENDI 105
Query: 278 DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSR 337
+ T E + G +V+VQV KE + TKGP LT+ + R ILI DR+ VS+
Sbjct: 106 NKSGTISE----VLSSGQEVLVQVAKEPISTKGPRLTSEISIAGRNLILIPFSDRVSVSQ 161
Query: 338 KITGVE-RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
KI E R+RLK + +++P+ +G+ IRTVA G + EL K+L L+ W++
Sbjct: 162 KINSPEERSRLKRLLLSIKPKNYGVIIRTVAEGKRVAELDKELRTLIKRWED-------- 213
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
A+A ++ P L+ +G+T +I++D N + + +++ + EV Y++ IAP
Sbjct: 214 AIARIRDIKA--PGLVLGEIGRTSAILRDLLNPSFQSVFINNADVFREVKEYVELIAPGR 271
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
V+LY PLFD+F IE++I + + V +G L+IE TEAL IDVN G+
Sbjct: 272 EKIVKLYRGNAPLFDQFGIEKQIKALFGRTVSFKSGAYLIIEHTEALHVIDVNSGNRS-K 330
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
S +E ++VNLAAA++IAR+LRLRD+GGIIVVDFIDM +++ VYE++K+ +E D
Sbjct: 331 SASDQETNAVEVNLAAAEEIARQLRLRDMGGIIVVDFIDMQSAEHRQQVYEKMKQVMESD 390
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
R+ + LS+ GLM+ITR+RVRP + SE C C G G++
Sbjct: 391 RTKHNILPLSKFGLMQITRQRVRPEMHIDTSEKCPVCHGKGKI 433
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED++LVEL EP +YLG V K++P + AFV++G + + + HY +
Sbjct: 16 IALLEDKRLVELRREPSNVKFAVGDIYLGKVKKIMPGLNAAFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDLVQ 203
+ P F K + + ++ H +ND T + Q+ LVQ
Sbjct: 73 --LGPQFLSLNKYIQQAKTKKGSISLHKFKPENDINKSGTISEVLSSGQEVLVQ 124
>gi|365966301|ref|YP_004947863.1| LOW QUALITY PROTEIN: ribonuclease E [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|365745214|gb|AEW76119.1| LOW QUALITY PROTEIN: ribonuclease E [Aggregatibacter
actinomycetemcomitans ANH9381]
Length = 959
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 198/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 379 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 409
>gi|149176937|ref|ZP_01855546.1| ribonuclease E [Planctomyces maris DSM 8797]
gi|148844192|gb|EDL58546.1| ribonuclease E [Planctomyces maris DSM 8797]
Length = 519
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/413 (32%), Positives = 236/413 (57%), Gaps = 34/413 (8%)
Query: 248 HHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEG 305
H DG+ NG P + + +G + ++ + K +Q +++G++V+VQV+KEG
Sbjct: 81 HLTDGDGNGK-PGRGR--------NQKGRRVNERSVANKPPIQEILKRGSEVLVQVIKEG 131
Query: 306 LGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVIAKTLQPE-GFGLTI 363
LG KGPTL+ Y + R+ +++ R+G+SRKI + R L+ I L P G G +
Sbjct: 132 LGNKGPTLSTYISIPGRYLVIMPGLQRVGISRKIADEDVRKDLRTILTQLAPPPGLGFIV 191
Query: 364 RTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIV 423
RT + ++L++DL LL W I+ K P+ ++ + +
Sbjct: 192 RTAGIDRTADDLKRDLNYLLRLWGTIVGRIKKLP----------TPVEIYSESDMMIRTI 241
Query: 424 QDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNML 483
+D +N ++ + +D P Y +++ + P +RV+ Y P+F +++EI ++
Sbjct: 242 RDIYNSEIDTLYIDEPTAYQRARDFMKVVLPKHVNRVKHYTGNDPIFYNSKLDDEICSIQ 301
Query: 484 SKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLR 543
++ VP+ GGS+VI+QTEALV+IDVN G+ + + EK VN+ AA++I+R++RLR
Sbjct: 302 NRHVPMKGGGSIVIDQTEALVAIDVNSGN--YRADDNAEKTAFKVNMKAAEEISRQIRLR 359
Query: 544 DIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVT 603
D+GG+IV+DFIDM ++ ++R V +++ V+RDR+ KV +S GL+E+TR+R+RPS+
Sbjct: 360 DLGGVIVIDFIDMREEKHRRSVERRLRELVKRDRARTKVLRISPFGLIEMTRQRIRPSLR 419
Query: 604 FMISEPCTCCQGTGRVEALETSFSKI---------EQEISRLLVSKSYNQSTF 647
+ E C C+GTG+V+ E+ ++ ++ ISRL+++ N + +
Sbjct: 420 RSMYEDCPSCRGTGQVKTAESMAIEVMRTLMTTVNKKNISRLVLNVHENVANY 472
>gi|189501611|ref|YP_001957328.1| Rne/Rng family ribonuclease [Candidatus Amoebophilus asiaticus 5a2]
gi|189497052|gb|ACE05599.1| ribonuclease, Rne/Rng family [Candidatus Amoebophilus asiaticus
5a2]
Length = 516
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 213/386 (55%), Gaps = 27/386 (6%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKV 349
+ K ++VQ+ KE + KGP L+A L R+ IL+ + VS++IT E R RL
Sbjct: 116 IHKNQPILVQIAKEPISNKGPRLSAELALAGRYMILVPVNQTVNVSKRITNSEERQRLLR 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ +++P FGL IRT A G + +L +DL+ LL W+ A + + AVP
Sbjct: 176 LVSSIKPANFGLIIRTAAEGKEVAKLVQDLKELLEKWE-----------AGIKALSHAVP 224
Query: 410 ILLHRAMGQ---TLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR 466
+ +G+ SI++D +EK +++D P Y E+ Y++ IAP+ V+ Y +
Sbjct: 225 --RDKVIGEINRASSILRDMLSEKFDNILIDDPTAYSELKQYIKTIAPEKEKIVKQYQGK 282
Query: 467 IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
+ LF+ IE+++ + + V + GG L+IE TEA+ IDVN G+ E+ L
Sbjct: 283 VKLFEHLGIEKQLKLLFGQTVSIEGGGYLIIEHTEAMHVIDVNSGNSAIE--KDHEEMAL 340
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
+NLAAAK+IAR+LRLRD+GGIIV+DFID+ D NKR +Y+ +K+ + DRS V V LS
Sbjct: 341 SINLAAAKEIARQLRLRDMGGIIVIDFIDIRDPENKRKIYQAMKEYMSEDRSKVTVLPLS 400
Query: 587 RHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
+ GLM+ITR+RVRP + E C C GTG++ +IE+ I LL +++ T
Sbjct: 401 KFGLMQITRQRVRPVTNLITQEQCPTCDGTGKISPSILIADQIEKSIQLLLTTQNEESIT 460
Query: 647 F--------YFIRHIPKRRKHLKLEY 664
YF RR L+Y
Sbjct: 461 LFVHPYLYAYFTAGFFSRRLKWLLKY 486
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 79 LINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSR 138
L+ S++ RIA L+D L+E E + +YLG V KL N+ +FV+IG +
Sbjct: 5 LVISAVQDGFRIAFLKDGALIEYQTEEKDTKFTVGDIYLGTVKKLAHNLNASFVDIGYKK 64
Query: 139 PSLMDIKHYREPFIFPPFRCRTK--KQEVNG 167
+ + HY + + P F +K + +NG
Sbjct: 65 VAFL---HYSD--LGPQFYSISKFTQLAING 90
>gi|154486651|ref|ZP_02028058.1| hypothetical protein BIFADO_00470 [Bifidobacterium adolescentis
L2-32]
gi|154084514|gb|EDN83559.1| ribonuclease, Rne/Rng family [Bifidobacterium adolescentis L2-32]
Length = 464
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 200/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER RLK
Sbjct: 67 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERARLK 126
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I AK DE + G
Sbjct: 127 NIVSKIAPKDMGVIIRTAAEGASEEAITKDLENLVRQWERIT--AKR-----DEFLHGKR 179
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-- 466
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 180 PKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYERIEEYLDTMAPDLKDKLEKWDPAEH 239
Query: 467 --IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 240 DGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 298
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL AA++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 299 VTRCNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 358
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 359 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 391
>gi|350564710|ref|ZP_08933526.1| ribonuclease, Rne/Rng family [Thioalkalimicrobium aerophilum AL3]
gi|349777412|gb|EGZ31776.1| ribonuclease, Rne/Rng family [Thioalkalimicrobium aerophilum AL3]
Length = 490
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 217/363 (59%), Gaps = 20/363 (5%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIA 351
+G +V+VQVVK+ LGTKG +T + SR + + +GVS+KI + VER RL+ I
Sbjct: 97 EGQRVLVQVVKDPLGTKGARVTMQVSIASRLLVYMPDEQNVGVSQKIDSAVERERLREII 156
Query: 352 KTLQPEG----FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA 407
K L PE G +RTVA G EL+ D+ L W+ A+ + E
Sbjct: 157 K-LIPESKATPGGFIVRTVAEGADFHELRADVMFLQKLWEQ----------ASQKATESK 205
Query: 408 VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI 467
P L++ + L I++D NE ++K+ VDS T+ ++ ++ + + ++ D++ Y
Sbjct: 206 KPRLVYEDLPLYLRILRDVPNEGIEKIRVDSAETFVKMKNFAKMYSLEVTDKIGHYKGDR 265
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
P+FD +NIE+EI L K+V L +GG L+I+QTEA+ +IDVN G G GH + E+ I
Sbjct: 266 PIFDLYNIEDEIQTALEKKVMLKSGGYLIIDQTEAMTTIDVNTG-GFVGH-KNLEETIYR 323
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
NL A + IAR++RLR++GGII++D IDM +D +K VYE ++KA+ RDR +SE+SR
Sbjct: 324 TNLEATQAIARQVRLRNLGGIIILDLIDMEEDEHKNHVYESLQKALTRDRVKTSISEISR 383
Query: 588 HGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTF 647
GL+E+TRKR R S+ + EPC C G G V+ ET +I +EI+R+ KS+N +
Sbjct: 384 LGLIEMTRKRTRESLERTLCEPCPMCHGRGVVKTAETVGYEIFREITRM--DKSFNAERY 441
Query: 648 YFI 650
I
Sbjct: 442 RVI 444
>gi|270293859|ref|ZP_06200061.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270275326|gb|EFA21186.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 524
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 213/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+S YHE+ Y+ IAP+ V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNSEAVYHEIKDYVTLIAPERAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K + +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEANALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVEL E + ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKQLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|455648326|gb|EMF27204.1| ribonuclease, Rne/Rng family, partial [Streptomyces gancidicus BKS
13-15]
Length = 1299
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 10/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 614 LKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 673
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W+ I + +K+ G P
Sbjct: 674 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIKKKSKNG---------GTAPT 724
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL +R+ + + +F
Sbjct: 725 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDEAWETIHGYVSHVAPDLAERLSRWTSEVDVF 784
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 785 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 843
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 844 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 903
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 904 VQMTRKRVGQGLLESFSETCVHCNGRG 930
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 538 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 591
>gi|416067187|ref|ZP_11582193.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
gi|348002232|gb|EGY42937.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype f
str. D18P1]
Length = 960
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 198/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + +E +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQVESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 379 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 409
>gi|198277145|ref|ZP_03209676.1| hypothetical protein BACPLE_03353 [Bacteroides plebeius DSM 17135]
gi|198269643|gb|EDY93913.1| S1 RNA binding domain protein [Bacteroides plebeius DSM 17135]
Length = 524
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 133/355 (37%), Positives = 214/355 (60%), Gaps = 15/355 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
+Q+G +VIVQ+VKE + TKGP LT R+ +LI D++ VS+KI + ER RLK
Sbjct: 116 LQQGQEVIVQIVKEPISTKGPRLTCELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQ 175
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++++P+ FG+ +RTVA G + EL +L+ LL W+ + + A +P
Sbjct: 176 LLQSIKPKNFGVIVRTVAEGKRVAELDAELKVLLKHWEETITKVQKAT---------KLP 226
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ +T+++++D FN + + V+ ++EV Y+ IAP+ V+ Y ++P+
Sbjct: 227 SLVYEETSRTVAMLRDLFNPSYENIYVNDETVFNEVKDYVALIAPERTGIVKRYTGQLPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F I ++I + K V +G L+IE TEAL +DVN G+ + +E LDVN
Sbjct: 287 FDNFGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRS-KSTNGQEANALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA ++AR+LRLRD+GGIIVVDFIDM N++ +YE + + +++DR+ + LS+ G
Sbjct: 346 LGAADELARQLRLRDMGGIIVVDFIDMNLAENRQKLYERMCQNMQKDRAKHNILPLSKFG 405
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
LM+ITR+RVRP++ E C C G G+++ +T SKI+ +++L V K
Sbjct: 406 LMQITRQRVRPAMDVTTDEDCPVCFGKGKIKPSILFTDTLESKIDYMVNKLKVKK 460
>gi|425742173|ref|ZP_18860295.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-487]
gi|425489074|gb|EKU55397.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-487]
Length = 1109
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQSTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|21675068|ref|NP_663133.1| ribonuclease G [Chlorobium tepidum TLS]
gi|21648306|gb|AAM73475.1| ribonuclease G [Chlorobium tepidum TLS]
Length = 560
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 207/346 (59%), Gaps = 14/346 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT-SCDRIGVSRKITG-VERTRLKVIAKTL 354
++VQV+KE +GTKG LT+ + RF +L+ +I VSR++ ER RLK + +++
Sbjct: 160 ILVQVIKEPIGTKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERGRLKKLVRSM 219
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEGFG IRTVA L++DLE LL+ W I E + A P L+ +
Sbjct: 220 LPEGFGAIIRTVAEDQDESLLKQDLEKLLAKWTQIEEKLQDAQ----------PPQLIFK 269
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
S+++D V ++V +S Y E +Y+Q APD+ V LY+ ++PLF+ +
Sbjct: 270 EDTIISSVLRDSLTTDVTEIVANSKSIYTETLNYIQWAAPDMVKNVSLYEGKLPLFEGYG 329
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
I +++ ++ S++V L +GG ++IE TEA+V +DVN G + +E+ L NL AA+
Sbjct: 330 IAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGR--YAAKREQEENSLKTNLEAAR 387
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
++ R+LRLRDIGGIIVVDFIDM D N + VY+ +K + DR+ + LS G+M+IT
Sbjct: 388 EVVRQLRLRDIGGIIVVDFIDMMDPKNSKKVYDAMKAELRNDRAKSNILPLSDFGIMQIT 447
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSK 640
R+R+RPS+ + + C C GTG V+A T+ +++E+ + + + +
Sbjct: 448 RERIRPSLMQRMGDQCPACGGTGVVQARFTTINQVERWLRKFALQQ 493
>gi|387120452|ref|YP_006286335.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D7S-1]
gi|415757027|ref|ZP_11481231.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D17P-3]
gi|429734639|ref|ZP_19268647.1| S1 RNA binding domain protein [Aggregatibacter
actinomycetemcomitans Y4]
gi|348655587|gb|EGY71033.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D17P-3]
gi|385874944|gb|AFI86503.1| ribonuclease E [Aggregatibacter actinomycetemcomitans D7S-1]
gi|429151579|gb|EKX94442.1| S1 RNA binding domain protein [Aggregatibacter
actinomycetemcomitans Y4]
Length = 963
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 197/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALST 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 412
>gi|260549181|ref|ZP_05823402.1| ribonuclease E [Acinetobacter sp. RUH2624]
gi|260407909|gb|EEX01381.1| ribonuclease E [Acinetobacter sp. RUH2624]
Length = 1109
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 231/418 (55%), Gaps = 37/418 (8%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQSTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++++A + DR+ ++ +LSR GLME++R+R+RPS+ C C GTG V L +
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|330469631|ref|YP_004407374.1| ribonuclease [Verrucosispora maris AB-18-032]
gi|328812602|gb|AEB46774.1| ribonuclease [Verrucosispora maris AB-18-032]
Length = 1028
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 204/329 (62%), Gaps = 11/329 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + G+SRK+ ER RL+ +
Sbjct: 579 LKSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPGGNASGISRKLPDTERKRLRDV 638
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L P+G G+ +RT A G S +EL +D++ L + W++I AK+A EG P+
Sbjct: 639 LKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDI--QAKAA--------EGGAPV 688
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +V+D FNE +++V++ ++Y V SYL ++PDL R+ + +F
Sbjct: 689 LLYEEPDLVIRVVRDLFNEDFRELVIEGDQSYDMVESYLSHVSPDLLARLRRHVGTTDVF 748
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ I+E+I L ++V LP+GG LVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 749 AEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGK-YTGAGGNLEETVTRNNL 807
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 808 EAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 867
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+++TRKR+ + SE C CC+G G V
Sbjct: 868 VQMTRKRIGAGLLEAFSETCECCKGRGLV 896
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR IAVLED LVE + + +VYLG V
Sbjct: 476 ILSESEFLARREAVDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRSSTGTMAGNVYLGKVQ 535
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 536 NVLPSMEAAFVDIGRGRNAVL 556
>gi|261493498|ref|ZP_05990020.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. BOVINE]
gi|261495851|ref|ZP_05992283.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261308478|gb|EEY09749.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. OVINE]
gi|261310831|gb|EEY12012.1| ribonuclease E [Mannheimia haemolytica serotype A2 str. BOVINE]
Length = 980
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 150/430 (34%), Positives = 233/430 (54%), Gaps = 42/430 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPSDYVFNGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------IQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 142 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
R+ ++ + +SR GL+E++R+R+ PS++ S C CQGTG+V E+ I I RL
Sbjct: 370 RARIQFARISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNES----IALSILRL 425
Query: 637 LVSKSYNQST 646
L ++ ++T
Sbjct: 426 LEEEAIKENT 435
>gi|386840180|ref|YP_006245238.1| hypothetical protein SHJG_4093 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374100481|gb|AEY89365.1| hypothetical protein SHJG_4093 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451793474|gb|AGF63523.1| hypothetical protein SHJGH_3858 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 1471
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 10/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 781 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 840
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AK+ G P
Sbjct: 841 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKNG---------GNAPT 891
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL R+ + + +F
Sbjct: 892 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWQTIHGYVSHVAPDLAGRLSRWTSEVDVF 951
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 952 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 1010
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1011 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1070
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 1071 VQMTRKRVGQGLLESFSETCVHCNGRG 1097
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 705 QIGVLEDGVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 758
>gi|359298638|ref|ZP_09184477.1| ribonuclease E [Haemophilus [parainfluenzae] CCUG 13788]
Length = 994
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 222/399 (55%), Gaps = 30/399 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S PQG S
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPQGYVFSGR- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IKEGQEVIVQVNKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I A+S A
Sbjct: 146 DERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKTAAESRA--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVESRLREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+ + +SR GL+E++R+R+ PS++ S C CQGTG+V
Sbjct: 374 QFARISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKV 412
>gi|402304473|ref|ZP_10823542.1| ribonuclease E/G family protein [Haemophilus sputorum HK 2154]
gi|400377742|gb|EJP30612.1| ribonuclease E/G family protein [Haemophilus sputorum HK 2154]
Length = 994
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 222/399 (55%), Gaps = 30/399 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S PQG S
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPQGYVFSGR- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IKEGQEVIVQVNKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I A+S A
Sbjct: 146 DERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKTAAESRA--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+ + +SR GL+E++R+R+ PS++ S C CQGTG+V
Sbjct: 374 QFARISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKV 412
>gi|417319415|ref|ZP_12105973.1| ribonuclease E [Vibrio parahaemolyticus 10329]
gi|328474605|gb|EGF45410.1| ribonuclease E [Vibrio parahaemolyticus 10329]
Length = 1003
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFINRVKKYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 385 RQRLSPSLAEASHHICPRCSGTGVV 409
>gi|411005716|ref|ZP_11382045.1| ribonuclease, Rne/Rng family, partial [Streptomyces globisporus
C-1027]
Length = 1015
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 202/338 (59%), Gaps = 10/338 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 349 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 408
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 409 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAK--------GTSGSNAP 460
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 461 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRWTSEVDV 520
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + N
Sbjct: 521 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTRNN 579
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 580 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 639
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
L+++TRKRV + SE C C G G + +E S
Sbjct: 640 LVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 677
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 252 FLARREAVERVMVVRQNGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 310
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 311 MEAAFVDIGKGRNAVL 326
>gi|398786052|ref|ZP_10548832.1| ribonuclease, Rne/Rng family, partial [Streptomyces auratus
AGR0001]
gi|396993904|gb|EJJ04960.1| ribonuclease, Rne/Rng family, partial [Streptomyces auratus
AGR0001]
Length = 923
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 199/327 (60%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 342 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKQI 401
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL +D++ L + W+ I + AKS++ A P
Sbjct: 402 LKKIVPEDAGVIVRTAAEGASEEELARDVQRLQAQWEEIQKKAKSSSSNA--------PT 453
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ + + +F
Sbjct: 454 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWGTIHGYVAHVAPDLTDRLQKWTSDVDVF 513
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 514 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 572
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 573 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 632
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 633 VQMTRKRVGQGLLESFSESCVHCNGRG 659
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 245 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVLPS 303
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 304 MEAAFVDIGKGRNAVL 319
>gi|238022128|ref|ZP_04602554.1| hypothetical protein GCWU000324_02034 [Kingella oralis ATCC 51147]
gi|237866742|gb|EEP67784.1| hypothetical protein GCWU000324_02034 [Kingella oralis ATCC 51147]
Length = 967
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 131/346 (37%), Positives = 208/346 (60%), Gaps = 16/346 (4%)
Query: 284 GEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT 340
G K +Q +++G +VIVQV K+ G KG LT Y L R+ +L+ + R G VSR+I
Sbjct: 83 GGKVRIQDVLKEGMQVIVQVEKDERGNKGAALTTYISLAGRYLVLMPNNPRGGGVSRRIE 142
Query: 341 GVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALA 399
G +R LK +A+ P G L RT G + EEL D LL W+ I E AA A
Sbjct: 143 GEDRAELKEAMAQLDVPHGMSLIARTAGIGRTSEELAWDFNYLLQLWRAIEE----AAAA 198
Query: 400 ADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
E P LL + ++DYF + +++VD+P Y +V+ ++ + P+ R
Sbjct: 199 HPE------PYLLFMESSLVIRAIRDYFRPDIGEILVDNPEVYEQVSEFMSYVMPNNLGR 252
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
++LYD IPLF + IE++I + S+ V LP+GG++VI+ TEALVS+DVN G+
Sbjct: 253 LKLYDDHIPLFSRLQIEQQIETVFSREVTLPSGGAIVIDHTEALVSVDVNSARST--RGA 310
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E+ N+ AA+++AR++RLRD+GG++V+DFIDM D ++R V +K A++RDR+
Sbjct: 311 DIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQREVENTLKDALKRDRAR 370
Query: 580 VKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
V++ +LS+ GL+E++R+R++P++ C C GTG + ++E++
Sbjct: 371 VQMGKLSKFGLLELSRQRLQPALAESSHIACPRCAGTGVIRSIEST 416
>gi|416047026|ref|ZP_11575912.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
gi|347994336|gb|EGY35629.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype d
str. I63B]
Length = 963
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 197/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 94 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 154 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALST 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 412
>gi|375148988|ref|YP_005011429.1| ribonuclease, Rne/Rng family [Niastella koreensis GR20-10]
gi|361063034|gb|AEW02026.1| ribonuclease, Rne/Rng family [Niastella koreensis GR20-10]
Length = 517
Score = 238 bits (608), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 129/342 (37%), Positives = 203/342 (59%), Gaps = 13/342 (3%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQ 355
++VQ++KE + KGP L+ L RF ++ D + VSRKI + ER RL+ I + ++
Sbjct: 123 ILVQILKEPIAAKGPRLSCEISLPGRFVVITPFNDIVAVSRKIHSAEERKRLQKIVEAIK 182
Query: 356 PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRA 415
P+ FG+ +RT A G + EL +DL L+ TW+ I + K A P +
Sbjct: 183 PKNFGVIVRTAAEGKNTAELHEDLAELVETWQTIQGNLKGAV----------APAKILSE 232
Query: 416 MGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNI 475
+T SI++D NE ++VV+ Y++ +Y+Q IAP+ + V Y+ +P+FD++ I
Sbjct: 233 QTKTTSILRDLLNEDFNRVVVNDRNIYNDTRNYIQRIAPEKAEIVSFYNNGLPIFDQYGI 292
Query: 476 EEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQ 535
+++ K V LP+G L+IE TEAL IDVN G+ G +++E+ L+ NL AA +
Sbjct: 293 TKQVKAAFGKTVNLPSGAYLIIEHTEALHVIDVNSGYKSVG--NNQEQNALETNLEAAAE 350
Query: 536 IARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITR 595
I+R+LRLRD+GGIIVVDFIDM NKR + E +++ + DR+ V +S+ GLM+ITR
Sbjct: 351 ISRQLRLRDLGGIIVVDFIDMKLPDNKRKLLEAMEECMRPDRAKHAVLPISKFGLMQITR 410
Query: 596 KRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
+R++P V E C C GTG++ + +IE+ +S L+
Sbjct: 411 QRMKPEVNINTQEVCPSCAGTGKISSTLLLEDEIEKNLSYLI 452
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+KLVEL E ++ +YLG V KL+P + AFV++G + + + HY
Sbjct: 16 IALLEDKKLVELHHEKADASFAVGDLYLGKVKKLIPGLNAAFVDVGFEKDAFL---HY 70
>gi|424057103|ref|ZP_17794620.1| rne/Rng family ribonuclease [Acinetobacter nosocomialis Ab22222]
gi|407440636|gb|EKF47153.1| rne/Rng family ribonuclease [Acinetobacter nosocomialis Ab22222]
Length = 1109
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 231/418 (55%), Gaps = 37/418 (8%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQSTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++++A + DR+ ++ +LSR GLME++R+R+RPS+ C C GTG V L +
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|433658163|ref|YP_007275542.1| Ribonuclease E [Vibrio parahaemolyticus BB22OP]
gi|432508851|gb|AGB10368.1| Ribonuclease E [Vibrio parahaemolyticus BB22OP]
Length = 1023
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFINRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|445437412|ref|ZP_21441058.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC021]
gi|444753994|gb|ELW78630.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC021]
Length = 1109
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 231/418 (55%), Gaps = 37/418 (8%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQSTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++++A + DR+ ++ +LSR GLME++R+R+RPS+ C C GTG V L +
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|452745983|ref|ZP_21945815.1| ribonuclease E [Mannheimia haemolytica serotype 6 str. H23]
gi|452086122|gb|EME02513.1| ribonuclease E [Mannheimia haemolytica serotype 6 str. H23]
Length = 980
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 150/430 (34%), Positives = 233/430 (54%), Gaps = 42/430 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPSDYVFNGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------IQEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 142 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKVFEKAKNHIRLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV+LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVKLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
R+ ++ + +SR GL+E++R+R+ PS++ S C CQGTG+V E+ I I RL
Sbjct: 370 RARIQFARISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKVRDNES----IALSILRL 425
Query: 637 LVSKSYNQST 646
L ++ ++T
Sbjct: 426 LEEEAIKENT 435
>gi|323345438|ref|ZP_08085661.1| ribonuclease G [Prevotella oralis ATCC 33269]
gi|323093552|gb|EFZ36130.1| ribonuclease G [Prevotella oralis ATCC 33269]
Length = 524
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 143/433 (33%), Positives = 237/433 (54%), Gaps = 25/433 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
+ +++ +N +D G F +L+ L + N + +V D +P
Sbjct: 46 IKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYLKQVQSDRKRLYP--FAK 99
Query: 279 SKHTPGEKTWLQVQK----GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ H P VQ+ G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 100 ASHLPDLDKSGSVQQTLTVGQEVLVQIVKEPISTKGPRLTGELSFAGRFLVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L W++ +
Sbjct: 160 VSSKIKSGEERARLKQLIHSVRPKNCGVIVRTVAEGKRVAELDAELKVLAKRWEDALVKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ P L+ G+ +++++D FN + + V+ ++E+ Y+ IA
Sbjct: 220 QKTQ---------KRPQLVFEEKGRAIALIRDIFNPNFENIYVNDKDAFNEIKDYVTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P V++Y ++P+FD FN+ ++I K V +G L+IE TEAL +DVN G+
Sbjct: 271 PAKAGIVKMYTGKVPIFDNFNVTKQIKASFGKTVNYKHGSYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A L+VNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 ARNEKGQEANA-LEVNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKI 629
++DR+ + LS+ GLM+ITR+RVRP++ + E C C G+G++ + E SKI
Sbjct: 390 QQDRARHNILPLSKFGLMQITRQRVRPAMDVNVEENCPTCFGSGKIRSSILFTERLESKI 449
Query: 630 EQEISRLLVSKSY 642
+Q ++++ V K Y
Sbjct: 450 DQLVNKIGVKKFY 462
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 91 AVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
A+LED++LVE EP ++ ++Y+ + KL+P + FV++G R + + HY
Sbjct: 17 ALLEDKRLVEYQNEPKSASFSVGNIYIAKIKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|28898836|ref|NP_798441.1| ribonuclease E [Vibrio parahaemolyticus RIMD 2210633]
gi|153839695|ref|ZP_01992362.1| ribonuclease E [Vibrio parahaemolyticus AQ3810]
gi|260879490|ref|ZP_05891845.1| ribonuclease E [Vibrio parahaemolyticus AN-5034]
gi|260898211|ref|ZP_05906707.1| ribonuclease E [Vibrio parahaemolyticus Peru-466]
gi|260899348|ref|ZP_05907743.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus
AQ4037]
gi|28807055|dbj|BAC60325.1| ribonuclease E [Vibrio parahaemolyticus RIMD 2210633]
gi|149746788|gb|EDM57776.1| ribonuclease E [Vibrio parahaemolyticus AQ3810]
gi|308088384|gb|EFO38079.1| ribonuclease E [Vibrio parahaemolyticus Peru-466]
gi|308093512|gb|EFO43207.1| ribonuclease E [Vibrio parahaemolyticus AN-5034]
gi|308110270|gb|EFO47810.1| ribonuclease, Rne/Rng family protein [Vibrio parahaemolyticus
AQ4037]
Length = 1023
Score = 238 bits (608), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFINRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|422324691|ref|ZP_16405728.1| hypothetical protein HMPREF0737_00838 [Rothia mucilaginosa M508]
gi|353343845|gb|EHB88159.1| hypothetical protein HMPREF0737_00838 [Rothia mucilaginosa M508]
Length = 1263
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 192/326 (58%), Gaps = 9/326 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I K
Sbjct: 481 GDSVLVQVTKDPIGHKGARLTSQVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKD 540
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
PEG G+ +RT A G S EEL D+ L + W+ I E A S + A P +L+
Sbjct: 541 KLPEGAGVIVRTAAEGASEEELTHDINRLRAQWEEIQEKANSRKVLA--------PEMLY 592
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + V+D FNE M+V + + +Y+ +APDL R++ +D LFD +
Sbjct: 593 QEPDLMIKTVRDVFNEDFTAMIVQGENAWDSIEAYVTYVAPDLVSRLQQWDSADDLFDHY 652
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 653 RINEQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 711
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 712 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQM 771
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRV 619
TRKR+ + + SEPC C G G V
Sbjct: 772 TRKRLGTGLLEVFSEPCEQCAGRGLV 797
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V +L+ +Q I VLED L E + + + +VYLG V ++P+
Sbjct: 381 FLARRESVDRQMLVRQKDGRIQ-IGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPS 439
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 440 MEAAFVDIGRGRNAVL 455
>gi|440704039|ref|ZP_20884928.1| ribonuclease, Rne/Rng family, partial [Streptomyces turgidiscabies
Car8]
gi|440274357|gb|ELP62940.1| ribonuclease, Rne/Rng family, partial [Streptomyces turgidiscabies
Car8]
Length = 1131
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 200/337 (59%), Gaps = 11/337 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 602 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 661
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K G P
Sbjct: 662 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIEKKSKG----------GNAPT 711
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 712 LLYGEPDMTVRVVRDIFNEDFTKVIVSGDEAWQTIHGYVSHVAPDLVDRLSKWTSEVDVF 771
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 772 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 830
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 831 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 890
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+++TRKRV + SE C C G G + +E S
Sbjct: 891 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 927
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 526 QIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 579
>gi|408373318|ref|ZP_11171015.1| phosphoric diester hydrolase [Alcanivorax hongdengensis A-11-3]
gi|407766775|gb|EKF75215.1| phosphoric diester hydrolase [Alcanivorax hongdengensis A-11-3]
Length = 1050
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 142/386 (36%), Positives = 212/386 (54%), Gaps = 29/386 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQV-QKGT 295
EA F DF E +GF P K S KD K G V ++G
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-------EISRQYFQKDPKDIQGRINIKDVIKEGQ 96
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VI+QV KE G KG LT + L R+ +L+ + R G +SR+I G ER +LK L
Sbjct: 97 EVIIQVAKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGISRRIEGEERAQLKEALGAL 156
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+ + +RT G S EELQ DL LL W +I E A++ P L++
Sbjct: 157 TVPDDMSVIVRTAGLGRSAEELQWDLNFLLKQWTSIEEAAQNRK----------APFLIY 206
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + ++DY + + ++++DS + + E +++Q + D +++LY + PLF +F
Sbjct: 207 QESNVIIRAIRDYLRKDIGEVLIDSEKVFAEAQAFVQQVMQDFQHKIKLYSEETPLFSRF 266
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
IE +I + V LP+GGS+VI+ TEALVSID+N G+ E+ L NL AA
Sbjct: 267 QIESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSSRAT--KGADIEETALQTNLEAA 324
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++IAR+LRLRDIGG+IVVDFIDM N+R V ++ A+E DR+ +++ +SR GL+E+
Sbjct: 325 EEIARQLRLRDIGGLIVVDFIDMGPARNQRDVENRMRDALEADRARIQLGRISRFGLLEL 384
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRV 619
+R+R+RPS+ S C C G G +
Sbjct: 385 SRQRLRPSLGETSSIVCPRCDGQGHI 410
>gi|365122384|ref|ZP_09339287.1| rne/Rng family ribonuclease [Tannerella sp. 6_1_58FAA_CT1]
gi|363642624|gb|EHL81970.1| rne/Rng family ribonuclease [Tannerella sp. 6_1_58FAA_CT1]
Length = 558
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 208/345 (60%), Gaps = 12/345 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +++VQ+ KE + +KGP LTA RF +L+ D++ +S+KI + E+ RLK + +
Sbjct: 154 GQEILVQISKEPISSKGPRLTAEISFAGRFLVLLPFSDKVSISQKIKSNEEKARLKQLIQ 213
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA + EL +L+ L+ W++ + + A P L+
Sbjct: 214 SIKPKNFGVIVRTVAENKRVAELDNELKTLVKCWEDCLVKLQKAK----------TPSLI 263
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
G+T+ +++D F+ + + V+ Y ++ +Y+ IAP+ D V+LY +P+FD
Sbjct: 264 FEETGRTVGVLRDIFSPSFENIYVNDEDAYQQIYNYVSLIAPERKDIVKLYKGNLPIFDN 323
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V NG L+IE TEAL IDVN G+ + +E LDVNLAA
Sbjct: 324 FAITKQIKSSFGKTVSFKNGAYLIIEHTEALHVIDVNSGNRS-KSTAGQESNALDVNLAA 382
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A++IAR+LRLRD+GGIIV+D+IDM + N++ +Y+ +K+ + +DR+ + LS+ GLM+
Sbjct: 383 AEEIARQLRLRDMGGIIVIDYIDMMEPDNRQKLYDRMKELMAQDRARHNILPLSKFGLMQ 442
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
ITR+RVRP++ SE C C G G + ++E +IS L+
Sbjct: 443 ITRQRVRPALDINTSEDCPTCYGKGTIRPSILFTDRLEDKISYLV 487
Score = 43.9 bits (102), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+L+D++LVEL E + +YLG V KL+P + AFV++G + + + HY
Sbjct: 51 IALLDDKRLVELQKEARNISFSVGDIYLGRVKKLMPGLNAAFVDVGYEKDAFL---HY 105
>gi|90413247|ref|ZP_01221242.1| Putative ribonuclease E [Photobacterium profundum 3TCK]
gi|90325799|gb|EAS42257.1| Putative ribonuclease E [Photobacterium profundum 3TCK]
Length = 1099
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 145/403 (35%), Positives = 220/403 (54%), Gaps = 35/403 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K EV D ++ QG + K +++G
Sbjct: 54 EAAFVDY-------GSERHGFLPLK-EVARDYFPANYTYQGRPNIKEV--------LKEG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK T
Sbjct: 98 QEVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALST 157
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+ P+G GL +RT G S EEL+ DL LL+ W + E A S P L+
Sbjct: 158 LELPKGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAVKEAADS----------NPAPFLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ ++DY + ++++DSP+ + +++ I PD RV+ Y+ +PLF
Sbjct: 208 HQESNVIARAIRDYLRRDIGEILIDSPKIFDRARDHIKLIRPDFLSRVKRYEGEVPLFSH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ NL A
Sbjct: 268 YQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETAFQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 326 ADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRV---EALETSFSKIEQE 632
++R+R+ PS+ C C GTG V E+L S ++ +E
Sbjct: 386 MSRQRLSPSLAEASHHVCPRCTGTGVVRDNESLSLSILRLIEE 428
Score = 39.7 bits (91), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G+
Sbjct: 4 MLINATQKEELRVALVDGQKLFDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDYGSE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 64 RHGFLPLKEVARDY-FP 79
>gi|260361709|ref|ZP_05774736.1| ribonuclease E [Vibrio parahaemolyticus K5030]
gi|308111281|gb|EFO48821.1| ribonuclease E [Vibrio parahaemolyticus K5030]
Length = 657
Score = 238 bits (607), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFINRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|254468764|ref|ZP_05082170.1| ribonuclease E [beta proteobacterium KB13]
gi|207087574|gb|EDZ64857.1| ribonuclease E [beta proteobacterium KB13]
Length = 738
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 202/337 (59%), Gaps = 14/337 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L R+ +L+ S + G+SR+I G ER+ K
Sbjct: 93 INEGQEVIVQVSKEERGNKGAALTTFLSLAGRYIVLMPNSSESGGISRRIEGDERSNFKE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ +G + RT G S+EE+Q DL+ L S A+ G + A
Sbjct: 153 VLSQLKVKKGMSVIGRTAGIGASVEEIQWDLDYLTQL---------SEAIQGASGQQEA- 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DYFN ++++++D+ Y + + ++ + PD DR++LY++
Sbjct: 203 PFLIYQESNLVIRAIRDYFNTDIEEILIDNQDIYDQASQFMNHVMPDYADRIQLYEESTA 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF KFNIE +I + + V LP+GG +VI+ TEALVSIDVN G E +
Sbjct: 263 LFSKFNIENQIESAFLREVQLPSGGVIVIDHTEALVSIDVNSSRST--KGRDIENTAFNT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++A++LRLRDIGG+IVVDFIDM + ++R V E ++ A++ D++ ++ +SR
Sbjct: 321 NLEAAREVAKQLRLRDIGGLIVVDFIDMENPKHQREVEECLRDALKHDKARIQTGRISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GLME++R+R+RPS+ + C C GTGR+ ++S
Sbjct: 381 GLMELSRQRLRPSIGETSNGECPKCNGTGRIRDFQSS 417
>gi|255326316|ref|ZP_05367401.1| ribonuclease, Rne/Rng family [Rothia mucilaginosa ATCC 25296]
gi|255296610|gb|EET75942.1| ribonuclease, Rne/Rng family [Rothia mucilaginosa ATCC 25296]
Length = 1148
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 192/326 (58%), Gaps = 9/326 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I K
Sbjct: 364 GDSVLVQVTKDPIGHKGARLTSQVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKD 423
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
PEG G+ +RT A G S EEL D+ L + W+ I E A S + A P +L+
Sbjct: 424 KLPEGAGVIVRTAAEGASEEELTHDINRLRAQWEEIQEKANSRKVLA--------PEMLY 475
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + V+D FNE M+V + + +Y+ +APDL R++ +D LFD +
Sbjct: 476 QEPDLMIKTVRDVFNEDFTAMIVQGENAWDSIEAYVTYVAPDLVSRLQKWDSADDLFDHY 535
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 536 RINEQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 594
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 595 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQM 654
Query: 594 TRKRVRPSVTFMISEPCTCCQGTGRV 619
TRKR+ + + SEPC C G G V
Sbjct: 655 TRKRLGTGLLEVFSEPCEQCAGRGLV 680
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V +L+ +Q I VLED L E + + + +VYLG V ++P+
Sbjct: 264 FLARRESVDRQMLVRQKDGRIQ-IGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPS 322
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 323 MEAAFVDIGRGRNAVL 338
>gi|442611423|ref|ZP_21026129.1| Ribonuclease E [Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441747351|emb|CCQ12191.1| Ribonuclease E [Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 1082
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 223/424 (52%), Gaps = 40/424 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P +K PD S KD ++
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAKQYFPDGYSFSGRPNIKDV-----------IK 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VI 350
+G +VIVQ+ KE G KG LT + + + +L+ + R G +SR+I G ER LK +
Sbjct: 96 EGQEVIVQIDKEERGQKGAALTTFISVAGSYLVLMPNNPRAGGISRRIEGDERIELKDTL 155
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
++ P G GL +RT G S EEL+ DL+ LL W I A+S P
Sbjct: 156 SRLDLPRGMGLIVRTAGVGKSFEELEYDLKALLVHWDAIQTAAQSRK----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ ++DY + ++++D + + E ++++ PD +RV+LY +PLF
Sbjct: 206 LIHQESNVIFRAIRDYLRRDIGEILIDKAKVFEEAKAHIERFRPDFINRVKLYQGDVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL
Sbjct: 266 THYQIESQIESAFKREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++IAR+LRLRD+GG+IV+DFIDM ++R V +K AV DR+ V++ ++SR GL
Sbjct: 324 EAAEEIARQLRLRDLGGLIVIDFIDMTPPRHQREVENRLKDAVRTDRARVQIGKISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFI 650
+E++R+R+RPS+ C C G G + + E+ + I RL+ ++ +T
Sbjct: 384 LEMSRQRLRPSLGEASQHSCPRCDGQGTIRSNES----LALSILRLIEEEAIKDNTAQVN 439
Query: 651 RHIP 654
+P
Sbjct: 440 AQVP 443
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEEMRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + + FP
Sbjct: 64 RHGFLPLKEIAKQY-FP 79
>gi|408678098|ref|YP_006877925.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Streptomyces venezuelae ATCC 10712]
gi|328882427|emb|CCA55666.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Streptomyces venezuelae ATCC 10712]
Length = 1265
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 200/333 (60%), Gaps = 11/333 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 587 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 646
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 647 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS----------GNAPT 696
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 697 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVHHVAPDLTDRLSKWTSEVDVF 756
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 757 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 815
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 816 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 875
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALE 623
+++TRKRV + SE C C G G + +E
Sbjct: 876 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHME 908
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 490 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 548
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 549 MEAAFVDIGKGRNAVL 564
>gi|301058191|ref|ZP_07199241.1| putative Ribonuclease G [delta proteobacterium NaphS2]
gi|300447693|gb|EFK11408.1| putative Ribonuclease G [delta proteobacterium NaphS2]
Length = 510
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 207/346 (59%), Gaps = 13/346 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKV 349
+ +G ++VQV KE LG KG LT++ L R +L+ + + IGVSRKI E R RLK
Sbjct: 118 LHEGQSIMVQVSKEPLGNKGARLTSHVSLPGRHLVLMPTVNHIGVSRKIEDKEERERLKG 177
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
I K + P FG +RTVA E+L+ +++ LL W NI D+ +G P
Sbjct: 178 IVKEINPGSFGFIVRTVAENTGKEKLEAEMDFLLKLWANI----------RDKMEKGHNP 227
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L++ + TL V+D F +V +++VDS Y ++ ++++ AP L VELY+ P+
Sbjct: 228 GPLYKDLAVTLRAVRDLFTREVDRLIVDSDEEYEKIMAFIETFAPRLKYSVELYEGAGPI 287
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F IE EI+ L ++ L +GG +VIE TEAL SIDVN G + + E+ IL N
Sbjct: 288 FDAFGIEIEISRALGNKIWLKSGGYIVIELTEALTSIDVNTGS--YVGKRNLEETILKTN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L A K+IA +LR R+IGG+IV+DFIDM SN+ V +K+A+ +D++ + +S G
Sbjct: 346 LEAVKEIAYQLRFRNIGGLIVIDFIDMEKISNRERVSMALKEALSKDKAKTNILPMSDLG 405
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
L+E+TRKR R S+ ++SEPC C G G +++ +T +I +++ R
Sbjct: 406 LIEMTRKRTRASLNRLLSEPCAYCDGRGTLKSPKTICYEIFRDLER 451
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S ++INS R+A++E+ +VEL +E ++Y G V +++P M AFV+
Sbjct: 1 MSNELIINSR-SYETRVALVENGVVVELHVERDSGKELMGNIYRGRVVRVLPGMQAAFVD 59
Query: 134 IGNSRPSLMDIKH-YREPFIFPPF-RCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTED 191
IG R + + + YR+ F F R EVN + A + ++ + S ED
Sbjct: 60 IGLGRTAFLYVSDVYRD---FSDFERIMLNASEVNDTLDADKIDESLKRQSYQGSFQIED 116
Query: 192 VAEADSQDDLVQ 203
+ + Q +VQ
Sbjct: 117 LLH-EGQSIMVQ 127
>gi|218781948|ref|YP_002433266.1| ribonuclease, Rne/Rng family [Desulfatibacillum alkenivorans AK-01]
gi|218763332|gb|ACL05798.1| ribonuclease, Rne/Rng family [Desulfatibacillum alkenivorans AK-01]
Length = 529
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 207/346 (59%), Gaps = 13/346 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKIT-GVERTRLKV 349
+++G +++VQV K +G KG +T+ + RF +L+ + + IGVSR+IT ER RLK
Sbjct: 128 IREGQEIMVQVAKSPIGKKGARVTSRITIPGRFLVLMPTTNHIGVSRRITDSGERNRLKE 187
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ E FG +RTV G E+L ++E L WK ++ + P
Sbjct: 188 QLMEARVEPFGYIVRTVCEGIGPEKLTHEVEFLTRVWKRVVHRYWQCS----------AP 237
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LLH+ + +L V+D F ++V ++V+DS R Y E+ +L+ P L D V+ YD+R P+
Sbjct: 238 SLLHQELSASLRSVRDLFTKEVDRLVIDSERGYREIQDFLEPNMPGLRDAVQYYDRREPI 297
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD + +E +I+ + K+V L +GG +VIE+TEALVSIDVN G G G E IL N
Sbjct: 298 FDAYQLEGDISRLGRKKVWLKSGGYIVIEETEALVSIDVNTGR-YVGKGDLSE-TILKTN 355
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L A K+IA +LRLRDIGGIIV+DFIDM ++ VY+ + + +++DRS V +S G
Sbjct: 356 LEALKEIAYQLRLRDIGGIIVIDFIDMEKLEDRDKVYQVLVETLKKDRSTTNVLPMSEMG 415
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
L+++TRKR R ++ +SEPC C+G G V + ++ I +EI R
Sbjct: 416 LIQMTRKRTRENINRQLSEPCAYCEGEGIVLSKKSICHNIYREILR 461
>gi|157375769|ref|YP_001474369.1| ribonuclease [Shewanella sediminis HAW-EB3]
gi|157318143|gb|ABV37241.1| ribonuclease, Rne/Rng family [Shewanella sediminis HAW-EB3]
Length = 1201
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 205/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G EL+ DL+ L W I E A EG
Sbjct: 154 AMSELEVPQGMGLIVRTAGVGKDSAELKWDLKVLEHHWTAIKE--------ASEG--RPA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + + ++ + PD DR++ YD +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDAKQHVALVRPDFVDRIKQYDAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RPS+ + C C G G + E+ + I RL+ ++ ++T
Sbjct: 382 GLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTES----LALSILRLMEEEAIKENTSQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 IEATVP 443
>gi|254382749|ref|ZP_04998106.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194341651|gb|EDX22617.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 923
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 202/334 (60%), Gaps = 9/334 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 268 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 327
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K + ++ P
Sbjct: 328 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKQISTSS--------PS 379
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 380 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDGAWETIHGYVNHVAPDLADRLSRWTSEVDVF 439
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ IDVN G G G + E+ + NL
Sbjct: 440 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGK-FTGQGGNLEETVTRNNL 498
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 499 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEVTSLGL 558
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
+++TRKRV + SE C C G G + +ET
Sbjct: 559 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHMET 592
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 171 FLARREAVERVMVVRQAGERTQ-IGVLEDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPS 229
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 230 MEAAFIDIGKGRNAVL 245
>gi|303252909|ref|ZP_07339067.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
gi|302648235|gb|EFL78433.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
4226]
Length = 995
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 94 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 154 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFSRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+ PS++ S C CQGTG+V E+ I I RLL ++ ++T
Sbjct: 382 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRLLEEEAIKENT 435
>gi|416034818|ref|ZP_11573382.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
gi|347997696|gb|EGY38670.1| ribonuclease E [Aggregatibacter actinomycetemcomitans serotype a
str. H5P1]
Length = 831
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 197/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALST 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQGTG++
Sbjct: 379 GLLEMSRQRLSPSLGESSHHVCPRCQGTGKI 409
>gi|296270425|ref|YP_003653057.1| ribonuclease, Rne/Rng family [Thermobispora bispora DSM 43833]
gi|296093212|gb|ADG89164.1| ribonuclease, Rne/Rng family [Thermobispora bispora DSM 43833]
Length = 990
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 195/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 596 LKSGQSVLVQVTKDPIGHKGARLTSQITLPGRYLVYVPDGSMTGISRKLPDKERARLKQI 655
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + PE G+ +RT A G + EEL +D+ L + W++I AK+A+ P
Sbjct: 656 LRKVMPENAGVIVRTAAEGATEEELSRDVARLAAQWESIQRKAKTAS----------PPE 705
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL + +V+D FNE ++V ++ V Y++ +AP L DR++ +D+ +F
Sbjct: 706 LLLGEPDLMIRVVRDIFNEDFSTLIVQGDEAWNTVEEYVRYVAPHLLDRLKKWDEETDVF 765
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I L ++V LP+GGSLVI+QTEA+ IDVN G G G + E+ + NL
Sbjct: 766 TAYRIDEQIAKALERKVWLPSGGSLVIDQTEAMTVIDVNTGK-FTGQGGNLEETVTRNNL 824
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 825 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLLECLSRDRTKHQVAEVTSLGL 884
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + S PC CC G G
Sbjct: 885 VQMTRKRVGQGLLEAFSTPCECCNGRG 911
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V +++I + Q +AVLED LVE ++ + +VYLG V ++P+
Sbjct: 499 FLARRESVERIMIIRRNAGRTQ-VAVLEDGVLVEHYVDRESNRSYVGNVYLGKVQNVLPS 557
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 558 MEAAFVDIGKGRNAVL 573
>gi|46143575|ref|ZP_00134935.2| COG1530: Ribonucleases G and E [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 992
Score = 238 bits (607), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 151 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFSRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+ PS++ S C CQGTG+V E+ I I RLL ++ ++T
Sbjct: 379 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRLLEEEAIKENT 432
>gi|171741361|ref|ZP_02917168.1| hypothetical protein BIFDEN_00442 [Bifidobacterium dentium ATCC
27678]
gi|171276975|gb|EDT44636.1| ribonuclease, Rne/Rng family [Bifidobacterium dentium ATCC 27678]
Length = 482
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 201/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 89 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 148
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I + DE + G
Sbjct: 149 GIVSKIAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERI-------SAKRDEFLHGKR 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 202 PKLLQGEPDVAIRVVRDIFNDDFGKMIVEGERVYGRIEEYLDTMAPDLKDKLEKWDPAEH 261
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 262 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 320
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 321 VTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 380
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 381 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 413
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 15 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 68
>gi|427401016|ref|ZP_18892254.1| rne/Rng family ribonuclease [Massilia timonae CCUG 45783]
gi|425719912|gb|EKU82839.1| rne/Rng family ribonuclease [Massilia timonae CCUG 45783]
Length = 1066
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 198/337 (58%), Gaps = 14/337 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQV KE G KG LT++ L R+ +L+ + R G VSR++ G ER L+
Sbjct: 93 LKEGQEIMVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEGEERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G + RT G ++EELQ DL L+ W+ I KSA A
Sbjct: 153 TMDKLDLPQGMSVIARTAGIGRTVEELQWDLNYLMQLWRAIEGAGKSAPGA--------- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ Y + ++ + PD+ RV+ Y +P
Sbjct: 204 -FLIYQESSLVIRAIRDYFQPDIGEVLIDTDEIYEQAQQFMSHVMPDMAHRVKRYSDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I ++ VPLP+GG++VI+ TEALVSIDVN GS E +
Sbjct: 263 LFSRFQIEHQIETAYARTVPLPSGGAIVIDHTEALVSIDVNSARAT--RGSDIETTAFNT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IV+DFIDM N+R V + +K A+ DR+ V++ ++SR
Sbjct: 321 NCEAADEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQRLKDALHHDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GLME++R+R+RPS++ C C GTG + E+S
Sbjct: 381 GLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESS 417
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSYGED 63
Query: 138 RPSLMDIK-----HYRE 149
R + K ++RE
Sbjct: 64 RHGFLPFKEVARSYFRE 80
>gi|395782038|ref|ZP_10462447.1| rne/Rng family ribonuclease [Bartonella rattimassiliensis 15908]
gi|395419889|gb|EJF86175.1| rne/Rng family ribonuclease [Bartonella rattimassiliensis 15908]
Length = 873
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 176/591 (29%), Positives = 290/591 (49%), Gaps = 54/591 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHREETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDV- 192
G +R + + P R A LEE +N + N+ DV
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL----------ALLEEE----ENAAVGENSADVV 106
Query: 193 AEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDG 252
EA +++ + + +++++G DV N +D + E G + +
Sbjct: 107 TEAVTKNKRLSRKTKKNQKNNGIAADVE------NDVAFEDVTIDNTDEILNAGVSYDEI 160
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E G + E+P T K K +++ ++VQV+KE G KG
Sbjct: 161 EMVGVEDIREEIP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAA 210
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAG 369
LT Y L R+ +L+ + R G +SRKIT V+ R RLK I K L P+G G+ +RT A
Sbjct: 211 LTTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLKEIVKELLVPKGMGVILRTAGAN 270
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
+ E+++D E L+ W I + ++ P L+H ++D +N+
Sbjct: 271 RTKAEIKRDYEYLMRLWDTIR----------NLTLQSTAPCLIHEESNLIKRAIRDLYNK 320
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
+ +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V L
Sbjct: 321 NISEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLQPQVSL 380
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549
+GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+I
Sbjct: 381 KSGGYLVINQTEALVAIDVNSGRST--REFSVEKTALQTNLEAAEEIARQLRLRDLAGLI 438
Query: 550 VVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEP 609
V+DFIDM ++ N RLV +++K ++ DR+ ++V +S GL+E++R+R+R SV ++
Sbjct: 439 VIDFIDMLEERNVRLVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQRIRISVLESTTQS 498
Query: 610 CTCCQGTGRVEALETSFSKIEQEISRLLVSKS-YN-------QSTFYFIRH 652
C C GTG + + + + + I L+ S YN + Y + H
Sbjct: 499 CPHCAGTGSIRSESSIALHVMRSIEEYLLHNSRYNIIVRTSVATALYVLNH 549
>gi|329960939|ref|ZP_08299218.1| S1 RNA binding domain protein [Bacteroides fluxus YIT 12057]
gi|328532225|gb|EGF59029.1| S1 RNA binding domain protein [Bacteroides fluxus YIT 12057]
Length = 524
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 128/352 (36%), Positives = 215/352 (61%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V++ +HE+ Y+ IAP+ V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNNEAVFHEIKDYVTLIAPERAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRI-KNANGQEANALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCQNMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|303250946|ref|ZP_07337135.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|302650163|gb|EFL80330.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
Length = 995
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 94 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 154 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFSRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+ PS++ S C CQGTG+V E+ I I RLL ++ ++T
Sbjct: 382 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRLLEEEAIKENT 435
>gi|299771718|ref|YP_003733744.1| Ribonuclease E(RNase E) [Acinetobacter oleivorans DR1]
gi|298701806|gb|ADI92371.1| Ribonuclease E(RNase E) [Acinetobacter oleivorans DR1]
Length = 1116
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 231/418 (55%), Gaps = 37/418 (8%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANSY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 FQADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK I +L P G + +RT G + EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQGTASS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GH E+ L+ NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V
Sbjct: 300 DINSAKSTRGHDV--EETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++++A + DR+ ++ +LSR GLME++R+R+RPS+ C C GTG V L +
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|126208900|ref|YP_001054125.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
gi|126097692|gb|ABN74520.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 5b str.
L20]
Length = 995
Score = 238 bits (606), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 94 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 154 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFSRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+ PS++ S C CQGTG+V E+ I I RLL ++ ++T
Sbjct: 382 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRLLEEEAIKENT 435
>gi|307246358|ref|ZP_07528435.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|307253093|ref|ZP_07534975.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307255344|ref|ZP_07537155.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|307257513|ref|ZP_07539278.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|307259794|ref|ZP_07541513.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|307261925|ref|ZP_07543584.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
gi|306852734|gb|EFM84962.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 1 str.
4074]
gi|306859428|gb|EFM91459.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306861695|gb|EFM93678.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 9 str.
CVJ13261]
gi|306863983|gb|EFM95901.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 10 str.
D13039]
gi|306866133|gb|EFM98002.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 11 str.
56153]
gi|306868376|gb|EFN00194.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 12 str.
1096]
Length = 992
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 151 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFSRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+ PS++ S C CQGTG+V E+ I I RLL ++ ++T
Sbjct: 379 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRLLEEEAIKENT 432
>gi|282881457|ref|ZP_06290131.1| S1 RNA binding domain protein [Prevotella timonensis CRIS 5C-B1]
gi|281304683|gb|EFA96769.1| S1 RNA binding domain protein [Prevotella timonensis CRIS 5C-B1]
Length = 524
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/424 (33%), Positives = 231/424 (54%), Gaps = 21/424 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + N + +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYTKYLKQVQSDRKKLYPFA--K 99
Query: 279 SKHTPGEKTWLQVQK----GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ H P K VQ G +V+VQ+VKE + TKGP LT RF +LI D++
Sbjct: 100 ASHLPDLKKDGSVQSTLTVGQEVLVQIVKEPISTKGPRLTGELSFAGRFLVLIPFGDKVS 159
Query: 335 VSRKIT-GVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI G ER RLK + +T++P+ G+ +RTVA G + L+ +++ L W+N +
Sbjct: 160 VSSKIKKGEERARLKQLVQTIRPKNCGVIVRTVAEGQRIAALEGEMKVLTKRWQNAIVKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ P L++ + +++++D F+ + + V++ Y +V+ Y+ IA
Sbjct: 220 QKTQ---------NRPQLVYEEAVRAIALLRDIFSPDFENIYVNNDEAYRQVSDYVSLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+ Y +P+FD FNI ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PNKAGIVKKYTGSVPIFDNFNITKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A L+VNL AA ++AR+LRLRD+GGIIVVDFIDM +++L+YE + K +
Sbjct: 331 TRNENGQEANA-LEVNLGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQLLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEI 633
+ DR+ + LS+ GLM+ITR+RVRP + + E C C GTG++ + ++E +I
Sbjct: 390 QNDRARHNILPLSKFGLMQITRQRVRPVMDVSVDETCPTCNGTGKIRSSILFTDRLEDKI 449
Query: 634 SRLL 637
+L+
Sbjct: 450 DKLV 453
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 91 AVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
A+LED++LVE EP ++ +VY+ V KL+P + FV++G R + + HY
Sbjct: 17 ALLEDKRLVEYQNEPRSASFSVGNVYIAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|293610197|ref|ZP_06692498.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427422927|ref|ZP_18913093.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-136]
gi|292827429|gb|EFF85793.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425700027|gb|EKU69618.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-136]
Length = 1107
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|190150765|ref|YP_001969290.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|189915896|gb|ACE62148.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
Length = 995
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 94 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 154 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFSRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+ PS++ S C CQGTG+V E+ I I RLL ++ ++T
Sbjct: 382 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRLLEEEAIKENT 435
>gi|184156730|ref|YP_001845069.1| ribonuclease G and E [Acinetobacter baumannii ACICU]
gi|332873141|ref|ZP_08441098.1| S1 RNA binding domain protein [Acinetobacter baumannii 6014059]
gi|384130399|ref|YP_005513011.1| Ribonuclease E RNase E [Acinetobacter baumannii 1656-2]
gi|385235999|ref|YP_005797338.1| ribonuclease G and E [Acinetobacter baumannii TCDC-AB0715]
gi|387125356|ref|YP_006291238.1| ribonuclease, Rne/Rng family [Acinetobacter baumannii MDR-TJ]
gi|407931335|ref|YP_006846978.1| Ribonuclease E RNase E [Acinetobacter baumannii TYTH-1]
gi|417570838|ref|ZP_12221695.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC189]
gi|417576562|ref|ZP_12227407.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-17]
gi|417871041|ref|ZP_12515985.1| ribonuclease E [Acinetobacter baumannii ABNIH1]
gi|417875703|ref|ZP_12520508.1| ribonuclease E [Acinetobacter baumannii ABNIH2]
gi|417879803|ref|ZP_12524356.1| ribonuclease E [Acinetobacter baumannii ABNIH3]
gi|417882039|ref|ZP_12526347.1| ribonuclease E [Acinetobacter baumannii ABNIH4]
gi|421202552|ref|ZP_15659700.1| ribonuclease E [Acinetobacter baumannii AC12]
gi|421533744|ref|ZP_15980025.1| ribonuclease E [Acinetobacter baumannii AC30]
gi|421630606|ref|ZP_16071307.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC180]
gi|421688555|ref|ZP_16128255.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-143]
gi|421702133|ref|ZP_16141618.1| ribonuclease E [Acinetobacter baumannii ZWS1122]
gi|421705872|ref|ZP_16145293.1| ribonuclease E [Acinetobacter baumannii ZWS1219]
gi|421792186|ref|ZP_16228341.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-2]
gi|424053843|ref|ZP_17791374.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab11111]
gi|424064778|ref|ZP_17802262.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab44444]
gi|425751557|ref|ZP_18869502.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-113]
gi|445465174|ref|ZP_21449952.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC338]
gi|445481526|ref|ZP_21455970.1| S1 RNA binding domain / ribonuclease E/G family multi-domain
protein [Acinetobacter baumannii Naval-78]
gi|183208324|gb|ACC55722.1| Ribonuclease G and E [Acinetobacter baumannii ACICU]
gi|322506619|gb|ADX02073.1| Ribonuclease E RNase E [Acinetobacter baumannii 1656-2]
gi|323516496|gb|ADX90877.1| ribonuclease G and E [Acinetobacter baumannii TCDC-AB0715]
gi|332738653|gb|EGJ69523.1| S1 RNA binding domain protein [Acinetobacter baumannii 6014059]
gi|342225056|gb|EGT90066.1| ribonuclease E [Acinetobacter baumannii ABNIH2]
gi|342226357|gb|EGT91330.1| ribonuclease E [Acinetobacter baumannii ABNIH1]
gi|342227450|gb|EGT92382.1| ribonuclease E [Acinetobacter baumannii ABNIH3]
gi|342238288|gb|EGU02721.1| ribonuclease E [Acinetobacter baumannii ABNIH4]
gi|385879848|gb|AFI96943.1| ribonuclease, Rne/Rng family [Acinetobacter baumannii MDR-TJ]
gi|395551286|gb|EJG17295.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC189]
gi|395569783|gb|EJG30445.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-17]
gi|398327935|gb|EJN44065.1| ribonuclease E [Acinetobacter baumannii AC12]
gi|404561298|gb|EKA66534.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-143]
gi|404667329|gb|EKB35250.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab11111]
gi|404672861|gb|EKB40665.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab44444]
gi|407194896|gb|EKE66032.1| ribonuclease E [Acinetobacter baumannii ZWS1122]
gi|407195285|gb|EKE66419.1| ribonuclease E [Acinetobacter baumannii ZWS1219]
gi|407899916|gb|AFU36747.1| Ribonuclease E RNase E [Acinetobacter baumannii TYTH-1]
gi|408696992|gb|EKL42512.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC180]
gi|409988416|gb|EKO44588.1| ribonuclease E [Acinetobacter baumannii AC30]
gi|410400493|gb|EKP52661.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-2]
gi|425500004|gb|EKU66032.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-113]
gi|444770318|gb|ELW94475.1| S1 RNA binding domain / ribonuclease E/G family multi-domain
protein [Acinetobacter baumannii Naval-78]
gi|444779306|gb|ELX03300.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC338]
Length = 1110
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|165976871|ref|YP_001652464.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
gi|165876972|gb|ABY70020.1| ribonuclease E [Actinobacillus pleuropneumoniae serovar 3 str.
JL03]
Length = 995
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 94 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 154 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ S +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFSRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+ PS++ S C CQGTG+V E+ I I RLL ++ ++T
Sbjct: 382 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRLLEEEAIKENT 435
>gi|417953176|ref|ZP_12596224.1| ribonuclease E [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|342817708|gb|EGU52585.1| ribonuclease E [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 986
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++ I PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHISLIRPDFVSRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ +V DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|307264115|ref|ZP_07545711.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
gi|306870544|gb|EFN02292.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 13 str.
N273]
Length = 992
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 151 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFSRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+ PS++ S C CQGTG+V E+ I I RLL ++ ++T
Sbjct: 379 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRLLEEEAIKENT 432
>gi|294629329|ref|ZP_06707889.1| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces sp. e14]
gi|292832662|gb|EFF91011.1| ribonuclease, Rne/Rng family domain-containing protein
[Streptomyces sp. e14]
Length = 813
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 10/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 365 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 424
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L + W+ I + +K+ G+ P
Sbjct: 425 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLQAQWEEIKKKSKNG---------GSAPT 475
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL R+ + + +F
Sbjct: 476 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAPDLAPRLSRWTSEVDVF 535
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 536 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 594
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 595 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 654
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 655 VQMTRKRVGQGLLESFSETCVHCNGRG 681
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED+ LVE + ++ +VYLG V ++P+M AF++IG R +++
Sbjct: 289 QIGVLEDDVLVEHYVNKEQAVSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 342
>gi|183601868|ref|ZP_02963237.1| ribonuclease G [Bifidobacterium animalis subsp. lactis HN019]
gi|219682782|ref|YP_002469165.1| ribonuclease G [Bifidobacterium animalis subsp. lactis AD011]
gi|241190358|ref|YP_002967752.1| ribonuclease G [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241195764|ref|YP_002969319.1| ribonuclease G [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|384193358|ref|YP_005579104.1| ribonuclease E/G family protein [Bifidobacterium animalis subsp.
lactis BLC1]
gi|384194914|ref|YP_005580659.1| ribonuclease G [Bifidobacterium animalis subsp. lactis V9]
gi|387820222|ref|YP_006300265.1| ribonuclease G [Bifidobacterium animalis subsp. lactis B420]
gi|387821884|ref|YP_006301833.1| ribonuclease G [Bifidobacterium animalis subsp. lactis Bi-07]
gi|423678880|ref|ZP_17653756.1| ribonuclease G [Bifidobacterium animalis subsp. lactis BS 01]
gi|183218753|gb|EDT89395.1| ribonuclease G [Bifidobacterium animalis subsp. lactis HN019]
gi|219620432|gb|ACL28589.1| ribonuclease G [Bifidobacterium animalis subsp. lactis AD011]
gi|240248750|gb|ACS45690.1| ribonuclease G [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240250318|gb|ACS47257.1| ribonuclease G [Bifidobacterium animalis subsp. lactis DSM 10140]
gi|295793345|gb|ADG32880.1| ribonuclease G [Bifidobacterium animalis subsp. lactis V9]
gi|345282217|gb|AEN76071.1| ribonuclease E/G family protein [Bifidobacterium animalis subsp.
lactis BLC1]
gi|366042069|gb|EHN18550.1| ribonuclease G [Bifidobacterium animalis subsp. lactis BS 01]
gi|386652923|gb|AFJ16053.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Bifidobacterium animalis subsp. lactis B420]
gi|386654492|gb|AFJ17621.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Bifidobacterium animalis subsp. lactis Bi-07]
Length = 1028
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 198/333 (59%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER RLK
Sbjct: 564 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERNRLK 623
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLEGL + W I +E + G
Sbjct: 624 SIVSKIAPKDMGVIIRTAAEGASEEAIAKDLEGLTNQWAEIQRKR-------EEFLHGKR 676
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-- 466
P LL + +V+D FN+ KM+V+ YH + YL +APDL +++E +D
Sbjct: 677 PKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLDHMAPDLHNKLERWDPEEH 736
Query: 467 --IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+FD++ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 737 GGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 795
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 796 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 855
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 856 VTSLGLVQMTRKRIGQGLVEAFSEECPECKGRG 888
Score = 42.7 bits (99), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 490 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 543
>gi|374619916|ref|ZP_09692450.1| RNAse E [gamma proteobacterium HIMB55]
gi|374303143|gb|EHQ57327.1| RNAse E [gamma proteobacterium HIMB55]
Length = 902
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K ++ P K + +++GT+
Sbjct: 54 EAAFVDF-------GAERHGFLPLKEIAHQYYRSAAPSDGK-------MRIKDAIKEGTE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE GTKG LT Y L R+ +L+ + + G +SR+I G +R+ L+ L+
Sbjct: 100 VIVQVDKEERGTKGAALTTYISLPGRYMVLMPNNPKAGGISRRIEGDDRSELRDALNQLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P G G+ IRT G S EELQ DL+ LL W I E AADE LL++
Sbjct: 160 IPNGMGVIIRTAGVGRSAEELQWDLDYLLKLWAAISE-------AADEN---PPQTLLYQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++D + + ++ + P +R++ YD +PLF++F
Sbjct: 210 ESDVIIRAIRDYLKDDIDQVLIDEAHAHRQALDFVSMVMPKYQNRIKAYDDSLPLFNRFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
+E +I + V LP+GGS+VI+ TEALVSID+N GS E+ L NL AA
Sbjct: 270 VEGQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGSDIEQTALQTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM N+R V ++ A+E DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDMGGLVVIDFIDMNASKNQRAVENRMRDALEIDRARVQLGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+RPS+ C C G G +
Sbjct: 388 RQRLRPSLGETSGMVCPRCTGQGTI 412
>gi|343501912|ref|ZP_08739779.1| ribonuclease E [Vibrio tubiashii ATCC 19109]
gi|418480459|ref|ZP_13049517.1| ribonuclease E [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342816341|gb|EGU51240.1| ribonuclease E [Vibrio tubiashii ATCC 19109]
gi|384571851|gb|EIF02379.1| ribonuclease E [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 983
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 213/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALDHIRLVRPDFVSRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ +V DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|307250703|ref|ZP_07532639.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 4 str. M62]
gi|306857261|gb|EFM89381.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 4 str. M62]
Length = 992
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 151 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFSRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+ PS++ S C CQGTG+V E+ I I RLL ++ ++T
Sbjct: 379 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRLLEEEAIKENT 432
>gi|307248485|ref|ZP_07530504.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
gi|306855004|gb|EFM87188.1| Ribonuclease E [Actinobacillus pleuropneumoniae serovar 2 str.
S1536]
Length = 992
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/358 (37%), Positives = 210/358 (58%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 151 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFSRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+ PS++ S C CQGTG+V E+ I I RLL ++ ++T
Sbjct: 379 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRLLEEEAIKENT 432
>gi|445397723|ref|ZP_21429389.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-57]
gi|444784001|gb|ELX07834.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-57]
Length = 1110
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|345855799|ref|ZP_08808445.1| ribonuclease E [Streptomyces zinciresistens K42]
gi|345632735|gb|EGX54596.1| ribonuclease E [Streptomyces zinciresistens K42]
Length = 941
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/337 (38%), Positives = 202/337 (59%), Gaps = 8/337 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 414 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 473
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K+ G P
Sbjct: 474 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIRKKSKN-------GGSSNAPS 526
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + V Y+ +APDL +R++ + + +F
Sbjct: 527 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWDTVHGYVSHVAPDLAERLQKWTSEVDVF 586
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 587 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 645
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 646 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 705
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+++TRKRV + SE C C G G + +E S
Sbjct: 706 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 742
Score = 42.7 bits (99), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + +S +VYLG V ++P+M AF++IG R +++
Sbjct: 338 QIGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVL 391
>gi|445115689|ref|ZP_21378303.1| rne/Rng family ribonuclease [Prevotella nigrescens F0103]
gi|444840296|gb|ELX67331.1| rne/Rng family ribonuclease [Prevotella nigrescens F0103]
Length = 523
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 144/453 (31%), Positives = 248/453 (54%), Gaps = 22/453 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + N F +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSFAKYLKQVQSDRKKLYPIQKAS 101
Query: 279 SKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
+ + + +Q +Q G +V+VQ+VKE + TKGP LT R+ +LI D++ VS
Sbjct: 102 KQPDLQKDSSIQNILQVGQEVMVQIVKEPISTKGPRLTGEISFAGRYIVLIPFGDKVNVS 161
Query: 337 RKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
KI +G ER RLK + ++++P+ FG+ +RTVA G + EL +++ L W++ + +
Sbjct: 162 TKIKSGEERARLKQLIQSIRPKNFGVIVRTVAQGKRVAELDAEMKLLYGRWQDAITKVQK 221
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
P L+ G+ + +++D FN + + V+ V +Y+ IAP+
Sbjct: 222 TQ---------ERPQLVFEEKGRAVGMLRDLFNPTYENIYVNDEEICDAVKNYVTLIAPE 272
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
+ V+ Y ++P+FD FN+ ++I + K + +G +++E TEA+ +DVN G+
Sbjct: 273 KANIVKKYTGKVPIFDNFNVTKQIKSSFGKTINYGHGCYIIVEHTEAMHVVDVNSGNRT- 331
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
+E+ LD NL AA +IAR+LRLRD+GGIIVVDFIDM +++++YE + KA+++
Sbjct: 332 -KEKEQEQNALDTNLGAADEIARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKAMQK 390
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEA--LETSF--SKIEQ 631
DR+ + LS+ GLM+ITR+RVRP++ ++E C C G+G++ + L T KIEQ
Sbjct: 391 DRARHNILPLSKFGLMQITRQRVRPAMDVDVAEDCPTCFGSGKIRSSLLFTDLLERKIEQ 450
Query: 632 EISRLLVSKSYNQSTFYFIRHIPKRRKHLKLEY 664
+ ++ + K Y Y +I K +K+ +
Sbjct: 451 LVEKIGIKKFYLHVHPYVAAYINKGIVSIKMRW 483
Score = 48.1 bits (113), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP ++N ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQREPREANFSVGNIYIAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|375136928|ref|YP_004997578.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter calcoaceticus PHEA-2]
gi|325124373|gb|ADY83896.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter calcoaceticus PHEA-2]
Length = 1107
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|126640478|ref|YP_001083462.1| ribonuclease E [Acinetobacter baumannii ATCC 17978]
Length = 1041
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 23 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 82
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 83 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 132
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 133 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 192
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 193 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 250
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 251 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 310
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 311 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 346
>gi|377573792|ref|ZP_09802845.1| hypothetical protein MOPEL_032_00520 [Mobilicoccus pelagius NBRC
104925]
gi|377537524|dbj|GAB48010.1| hypothetical protein MOPEL_032_00520 [Mobilicoccus pelagius NBRC
104925]
Length = 1183
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
+ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 537 LSNGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPDGSMTGISRKLPDTERARLKKI 596
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P+ G+ +RT A G S EL D+E L W+ I + AK+ G P+
Sbjct: 597 LKQIVPDDAGVIVRTAAEGASEAELTADVERLQRAWEKIQKKAKT----------GNAPV 646
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LLH T +V+D FNE K+VV + ++ Y++ +APDL DR+E + +F
Sbjct: 647 LLHGEADLTTRVVRDVFNEDFTKLVVSGEVAWESISDYVESVAPDLADRLERWTGEKDVF 706
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ ++E+I + ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + N+
Sbjct: 707 AEYRVDEQIAKAMDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FTGSGGNLEETVTKNNI 765
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGI+VVDFIDM ++N+ LV + + + RDR+ +V+E++ GL
Sbjct: 766 EAAEEIVRQLRLRDIGGIVVVDFIDMVLEANRELVVRRLVECLGRDRTKHQVAEVTSLGL 825
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + + SE C C G G
Sbjct: 826 VQMTRKRVGAGLIEVFSEECEHCHGRG 852
>gi|395773144|ref|ZP_10453659.1| ribonuclease, Rne/Rng family [Streptomyces acidiscabies 84-104]
Length = 1260
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 195/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 628 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 687
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L W+ I ++AK+ G P
Sbjct: 688 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEEIRKNAKT----------GNAPT 737
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL R+ + + +F
Sbjct: 738 LLYGEPDMTVRVVRDIFNEDFTKVVVSGDEAWQTIHGYVAHVAPDLAGRLSRWTSEVDVF 797
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 798 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 856
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 857 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 916
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 917 VQMTRKRVGQGLLESFSETCVHCNGRG 943
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + +S +VYLG V ++P+
Sbjct: 531 FLARREAVERVMVVRQSHERTQ-IGVLEDGVLVEHYVNKEQSTSYVGNVYLGKVQNVLPS 589
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 590 MEAAFIDIGKGRNAVL 605
>gi|91227383|ref|ZP_01261772.1| ribonuclease E [Vibrio alginolyticus 12G01]
gi|91188647|gb|EAS74937.1| ribonuclease E [Vibrio alginolyticus 12G01]
Length = 1021
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFLNRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|237723036|ref|ZP_04553517.1| ribonuclease G [Bacteroides sp. 2_2_4]
gi|293372583|ref|ZP_06618965.1| S1 RNA binding domain protein [Bacteroides ovatus SD CMC 3f]
gi|299146729|ref|ZP_07039797.1| ribonuclease G [Bacteroides sp. 3_1_23]
gi|336414441|ref|ZP_08594787.1| hypothetical protein HMPREF1017_01895 [Bacteroides ovatus
3_8_47FAA]
gi|383113630|ref|ZP_09934402.1| rne/Rng family ribonuclease [Bacteroides sp. D2]
gi|423297474|ref|ZP_17275535.1| rne/Rng family ribonuclease [Bacteroides ovatus CL03T12C18]
gi|229447558|gb|EEO53349.1| ribonuclease G [Bacteroides sp. 2_2_4]
gi|292632392|gb|EFF50988.1| S1 RNA binding domain protein [Bacteroides ovatus SD CMC 3f]
gi|298517220|gb|EFI41101.1| ribonuclease G [Bacteroides sp. 3_1_23]
gi|313695789|gb|EFS32624.1| rne/Rng family ribonuclease [Bacteroides sp. D2]
gi|335933553|gb|EGM95555.1| hypothetical protein HMPREF1017_01895 [Bacteroides ovatus
3_8_47FAA]
gi|392666337|gb|EIY59851.1| rne/Rng family ribonuclease [Bacteroides ovatus CL03T12C18]
Length = 524
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 213/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ L+ W++ M + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLVKHWEDAMVKVQKAT---------KYPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIRDYVSLIAPDRANIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L V K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKK 460
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|169797346|ref|YP_001715139.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter baumannii AYE]
gi|213155839|ref|YP_002317884.1| ribonuclease E [Acinetobacter baumannii AB0057]
gi|215484786|ref|YP_002327021.1| ribonuclease E(RNase E) [Acinetobacter baumannii AB307-0294]
gi|301345640|ref|ZP_07226381.1| ribonuclease G and E [Acinetobacter baumannii AB056]
gi|301511839|ref|ZP_07237076.1| ribonuclease G and E [Acinetobacter baumannii AB058]
gi|301597320|ref|ZP_07242328.1| ribonuclease G and E [Acinetobacter baumannii AB059]
gi|332852952|ref|ZP_08434462.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013150]
gi|332867956|ref|ZP_08437944.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013113]
gi|417574772|ref|ZP_12225625.1| ribonuclease E/G family protein [Acinetobacter baumannii Canada
BC-5]
gi|421620251|ref|ZP_16061189.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC074]
gi|421642803|ref|ZP_16083314.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-235]
gi|421649286|ref|ZP_16089681.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-251]
gi|421659317|ref|ZP_16099538.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-83]
gi|421697880|ref|ZP_16137424.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-58]
gi|421797930|ref|ZP_16233964.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-21]
gi|421800966|ref|ZP_16236933.1| ribonuclease E/G family protein [Acinetobacter baumannii Canada
BC1]
gi|169150273|emb|CAM88170.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter baumannii AYE]
gi|213054999|gb|ACJ39901.1| ribonuclease E [Acinetobacter baumannii AB0057]
gi|213988011|gb|ACJ58310.1| Ribonuclease E(RNase E) [Acinetobacter baumannii AB307-0294]
gi|332728888|gb|EGJ60243.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013150]
gi|332733657|gb|EGJ64816.1| S1 RNA binding domain protein [Acinetobacter baumannii 6013113]
gi|400205505|gb|EJO36485.1| ribonuclease E/G family protein [Acinetobacter baumannii Canada
BC-5]
gi|404572926|gb|EKA77966.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-58]
gi|408511369|gb|EKK13017.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-235]
gi|408514059|gb|EKK15671.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-251]
gi|408700911|gb|EKL46356.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC074]
gi|408708028|gb|EKL53306.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-83]
gi|410395555|gb|EKP47849.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-21]
gi|410406327|gb|EKP58339.1| ribonuclease E/G family protein [Acinetobacter baumannii Canada
BC1]
Length = 1110
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|319898066|ref|YP_004136263.1| ribonuclease e, RNA-binding protein [Haemophilus influenzae F3031]
gi|317433572|emb|CBY81956.1| ribonuclease E, RNA-binding protein [Haemophilus influenzae F3031]
Length = 932
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 36/389 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 93 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 152
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 153 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 203 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +S GL
Sbjct: 321 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISHFGL 380
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 381 LEMSRQRLSPSLGESSHHICPRCQGTGKV 409
>gi|261253418|ref|ZP_05945991.1| ribonuclease E [Vibrio orientalis CIP 102891 = ATCC 33934]
gi|260936809|gb|EEX92798.1| ribonuclease E [Vibrio orientalis CIP 102891 = ATCC 33934]
Length = 983
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S A P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDS----------NAAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++ I PD RV+ YD +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHISLIRPDFVSRVKKYDGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ +V DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 385 RQRLSPSLAEASHHICPRCTGTGVV 409
>gi|445446910|ref|ZP_21443541.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-A-92]
gi|444759852|gb|ELW84314.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-A-92]
Length = 1110
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|424745528|ref|ZP_18173791.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-141]
gi|422942221|gb|EKU37282.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-141]
Length = 1115
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|421627246|ref|ZP_16068057.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC098]
gi|421650981|ref|ZP_16091353.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC0162]
gi|421675753|ref|ZP_16115672.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC065]
gi|421692661|ref|ZP_16132312.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-116]
gi|445458064|ref|ZP_21446888.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC047]
gi|404559947|gb|EKA65198.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-116]
gi|408508993|gb|EKK10669.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC0162]
gi|408693337|gb|EKL38946.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC098]
gi|410381270|gb|EKP33836.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC065]
gi|444775708|gb|ELW99764.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC047]
Length = 1110
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|193076231|gb|ABO10860.2| ribonuclease E [Acinetobacter baumannii ATCC 17978]
Length = 1110
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|169634492|ref|YP_001708228.1| ribonuclease E [Acinetobacter baumannii SDF]
gi|169153284|emb|CAP02390.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter baumannii]
Length = 1110
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|157962325|ref|YP_001502359.1| ribonuclease [Shewanella pealeana ATCC 700345]
gi|157847325|gb|ABV87824.1| ribonuclease, Rne/Rng family [Shewanella pealeana ATCC 700345]
Length = 1084
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 194/336 (57%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVIIQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G EL+ DL+ L W I E A+ A
Sbjct: 154 ALAELEVPQGMGLIVRTAGVGKDPAELKWDLKVLQHHWAAIKEAAEGAP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR Y + ++ + PD +R++ YD +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEILIDHPRIYEQAKEHVSLVRPDFVERIKRYDAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V + ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEKRMQDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + E+
Sbjct: 382 GLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTES 417
>gi|425749414|ref|ZP_18867394.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-348]
gi|425489487|gb|EKU55799.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-348]
Length = 1110
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|417553570|ref|ZP_12204639.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-81]
gi|417560781|ref|ZP_12211660.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC137]
gi|421200818|ref|ZP_15657977.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC109]
gi|421456914|ref|ZP_15906252.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-123]
gi|421634014|ref|ZP_16074635.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-13]
gi|421806212|ref|ZP_16242084.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-A-694]
gi|395523363|gb|EJG11452.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC137]
gi|395562850|gb|EJG24503.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC109]
gi|400210618|gb|EJO41587.1| ribonuclease E/G family protein [Acinetobacter baumannii IS-123]
gi|400389987|gb|EJP57034.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-81]
gi|408705121|gb|EKL50470.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-13]
gi|410407089|gb|EKP59077.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-A-694]
Length = 1110
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|29346910|ref|NP_810413.1| ribonuclease G [Bacteroides thetaiotaomicron VPI-5482]
gi|298386443|ref|ZP_06995999.1| ribonuclease G [Bacteroides sp. 1_1_14]
gi|383121113|ref|ZP_09941829.1| rne/Rng family ribonuclease [Bacteroides sp. 1_1_6]
gi|29338808|gb|AAO76607.1| Ribonuclease G [Bacteroides thetaiotaomicron VPI-5482]
gi|251838150|gb|EES66238.1| rne/Rng family ribonuclease [Bacteroides sp. 1_1_6]
gi|298260820|gb|EFI03688.1| ribonuclease G [Bacteroides sp. 1_1_14]
Length = 524
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 213/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ L+ W++ M + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLIKHWEDAMAKVQKAT---------KYPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L V K
Sbjct: 409 ITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKK 460
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKFVKQTLSDKKKLNSISKATLLPD---LDKDGTVANTLKVGQ 120
>gi|403675465|ref|ZP_10937628.1| ribonuclease E [Acinetobacter sp. NCTC 10304]
Length = 1110
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|395792398|ref|ZP_10471832.1| rne/Rng family ribonuclease [Bartonella vinsonii subsp. arupensis
Pm136co]
gi|395432576|gb|EJF98555.1| rne/Rng family ribonuclease [Bartonella vinsonii subsp. arupensis
Pm136co]
Length = 876
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 173/551 (31%), Positives = 275/551 (49%), Gaps = 44/551 (7%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A EE A +N TE +
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL--------ALLEEEEKAAVGEN-----YTESLP 107
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
E +++ + DE + DV + + I+DD E E F H D E
Sbjct: 108 EETNKNKKRSRKTKKDERNSIIAADVENDMTS-EAIILDDTE-----EVFNANVSHDDIE 161
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
G + E+P T K K +++ ++VQV+KE G KG L
Sbjct: 162 MVGAEDVREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAAL 211
Query: 314 TAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT A
Sbjct: 212 TTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRTAGANR 271
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L W + ++ L + P L+H ++D +N+
Sbjct: 272 TKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLVHEESNLIKRSIRDLYNKN 321
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V L
Sbjct: 322 INEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLHPQVSLK 381
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 382 SGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRDLAGLIV 439
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDM ++ N RLV +++K+ ++ DR+ ++V +S GL+E++R+R+R SV ++PC
Sbjct: 440 IDFIDMLEERNVRLVEKKLKECLKSDRARIQVGHISHFGLLEMSRQRIRVSVLESTTQPC 499
Query: 611 TCCQGTGRVEA 621
C GTG V +
Sbjct: 500 PHCAGTGNVRS 510
>gi|192361431|ref|YP_001982146.1| ribonuclease, Rne/Rng family protein [Cellvibrio japonicus Ueda107]
gi|190687596|gb|ACE85274.1| ribonuclease, Rne/Rng family protein [Cellvibrio japonicus Ueda107]
Length = 947
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 216/387 (55%), Gaps = 26/387 (6%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K E+ + + +P D + K +++GT+
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EISREYFSRNPGDNNDGRI----KIKDVLKEGTE 101
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQ+ KE G KG LT + L R+ +L+ + R G +SR+I G +R LK + +
Sbjct: 102 VIVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEDRAELKDALGEIE 161
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G G+ IRT G S EELQ DL LL W++I AK + P L +
Sbjct: 162 VPQGMGVIIRTAGVGRSAEELQWDLNYLLQLWESIENAAKRSP----------APEFLFQ 211
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + V +++VD+ + ++Q + P+ +V+LY IPLF+++
Sbjct: 212 ESNVIIRAIRDYLRQDVGEVIVDNKEAFDLAAGFIQQVMPNYRSKVKLYQDDIPLFNRYQ 271
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALV+ID+N G E+ L NL AA
Sbjct: 272 IESQIETAFQREVKLPSGGSIVIDVTEALVAIDINSSRAT--KGGDIEETALQTNLEAAD 329
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM N+R V ++ A+ DR+ V++ +SR GL+E++
Sbjct: 330 EIARQLRLRDMGGLVVIDFIDMQPVRNQREVENRMRDALMMDRARVQIGRISRFGLLEMS 389
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEA 621
R+R+RPS+ S+ C C+G G + +
Sbjct: 390 RQRLRPSLGETHSKICPRCEGVGTIRS 416
>gi|389713805|ref|ZP_10187089.1| ribonuclease E [Acinetobacter sp. HA]
gi|388609921|gb|EIM39062.1| ribonuclease E [Acinetobacter sp. HA]
Length = 1144
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 149/418 (35%), Positives = 230/418 (55%), Gaps = 37/418 (8%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ + S I G EP EA F ++ G GF S E+ +
Sbjct: 26 DFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQ-------GFL-SMREIANTY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ + P+ T + + + +GT+++VQV KE G KG L+ + L R+ +L+
Sbjct: 78 YKADPRQTSNIREL--------ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I+G R LK + +L P G + +RT G S EELQ DL+ LL W
Sbjct: 130 NNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEELQLDLQHLLDLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A S G P+L+H+ G ++DY + V ++++DS + Y+E
Sbjct: 190 AQIQSTANS----------GPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAY 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++++ + P D+++ Y PLF F IE +I + V LP+GGS+VI+QTEALVSI
Sbjct: 240 NFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N G E L+ NL AA++IAR+LRLRDIGG++V+DFIDM D N+R+V
Sbjct: 300 DINSAKST--RGQDVEDTALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++++A + DR+ ++ +LSR GLME++R+R+RPS+ C C GTG V L +
Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|346223797|ref|ZP_08844939.1| ribonuclease G [Anaerophaga thermohalophila DSM 12881]
Length = 519
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/403 (36%), Positives = 228/403 (56%), Gaps = 17/403 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDS-HTSHPQGTK 277
V +++ +N + +D G + F +L+ + SK++ S H P+
Sbjct: 46 VKKIMPGLNAAFVDVGYEKDAFLHYLDLGPQFLSLNKYLKQSKAKKGSVSLHKFKPENDI 105
Query: 278 DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSR 337
+ T E + G +V+VQV KE + TKGP LT+ + R ILI DR+ VS+
Sbjct: 106 NKNGTISE----VLTGGQEVLVQVAKEPISTKGPRLTSEISIAGRNLILIPFSDRVSVSQ 161
Query: 338 KI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
KI + ER+RLK + +++P+ +G+ IRTVA G + EL K+L L+ W++ + +
Sbjct: 162 KIESPEERSRLKRLLLSIKPKNYGVIIRTVAEGKRVAELDKELRTLVKRWEDSIARVRDV 221
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
VP L+ +G+T +I++D N + ++ + EV Y++ IAP
Sbjct: 222 K----------VPGLVLGEIGRTSAILRDILNPSFHSVYINDIEIFREVREYVELIAPGR 271
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
V+LY PLFD+F IE++I + + V +G L+IE TEAL IDVN G+
Sbjct: 272 EKIVKLYKGNAPLFDQFGIEKQIKALFGRTVSFKSGAYLIIEHTEALHVIDVNSGNRS-R 330
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
S +E ++VNLAAA++IAR+LRLRD+GGIIVVDFIDM +++LV+E +K+A++ D
Sbjct: 331 SASDQESNAVEVNLAAAEEIARQLRLRDMGGIIVVDFIDMQLSEHRQLVFERMKEAMDAD 390
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
R+ + LS+ GLM+ITR+RVRP + SE C C+G G +
Sbjct: 391 RTKHNILPLSKFGLMQITRQRVRPEMHIDTSEKCPVCKGKGEI 433
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED +LVEL EP +YLG V K++P + AFV++G + + + HY +
Sbjct: 16 IALLEDRRLVELRREPSNVKFAVGDIYLGKVKKIMPGLNAAFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDLVQ 203
+ P F K + + + ++ H +ND + T Q+ LVQ
Sbjct: 73 --LGPQFLSLNKYLKQSKAKKGSVSLHKFKPENDINKNGTISEVLTGGQEVLVQ 124
>gi|384141684|ref|YP_005524394.1| ribonuclease G and E [Acinetobacter baumannii MDR-ZJ06]
gi|347592177|gb|AEP04898.1| ribonuclease G and E [Acinetobacter baumannii MDR-ZJ06]
Length = 1110
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|416147130|ref|ZP_11601586.1| ribonuclease G and E [Acinetobacter baumannii AB210]
gi|333365701|gb|EGK47715.1| ribonuclease G and E [Acinetobacter baumannii AB210]
Length = 1110
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|239500867|ref|ZP_04660177.1| ribonuclease E (RNase E): endoribonuclease for rRNA processing and
mRNA degradation [Acinetobacter baumannii AB900]
gi|421677532|ref|ZP_16117424.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC111]
gi|410393288|gb|EKP45642.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC111]
Length = 1110
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|451976045|ref|ZP_21927217.1| ribonuclease E [Vibrio alginolyticus E0666]
gi|451930013|gb|EMD77735.1| ribonuclease E [Vibrio alginolyticus E0666]
Length = 1020
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFLNRVKKYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 385 RQRLSPSLAEASHHICPRCSGTGVV 409
>gi|343507588|ref|ZP_08744985.1| ribonuclease E [Vibrio ichthyoenteri ATCC 700023]
gi|342797646|gb|EGU33289.1| ribonuclease E [Vibrio ichthyoenteri ATCC 700023]
Length = 1042
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + PQG + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPQGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTMYDRALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTG 410
>gi|421807898|ref|ZP_16243755.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC035]
gi|410416077|gb|EKP67852.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC035]
Length = 1110
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTANS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|320156797|ref|YP_004189176.1| ribonuclease E [Vibrio vulnificus MO6-24/O]
gi|319932109|gb|ADV86973.1| ribonuclease E [Vibrio vulnificus MO6-24/O]
Length = 1033
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAKEYFPDGY-SYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + ++S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWAAIKDASES----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ YD +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFVNRVKKYDGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 385 RQRLSPSLAEASHHICPRCSGTGVV 409
>gi|417547959|ref|ZP_12199040.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-18]
gi|417566806|ref|ZP_12217678.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC143]
gi|395552478|gb|EJG18486.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC143]
gi|400388258|gb|EJP51330.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-18]
Length = 1110
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|329122288|ref|ZP_08250876.1| ribonuclease E [Haemophilus aegyptius ATCC 11116]
gi|327473849|gb|EGF19266.1| ribonuclease E [Haemophilus aegyptius ATCC 11116]
Length = 935
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/389 (35%), Positives = 213/389 (54%), Gaps = 36/389 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++ PDD +D +
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDI-----------LT 95
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +VIVQV KE G KG LT + L + + + + R G +SR+I G ERT LK
Sbjct: 96 EGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVFMPNNPRAGGISRRIEGDERTELKEAL 155
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+L P+G GL +RT G S EELQ DL+ LL W+ I + ++S P
Sbjct: 156 SSLDVPDGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ + ++DY + ++++DSP+ + + +++ + PD +RV+LY +PLF
Sbjct: 206 LIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKAKEHIKLVRPDFINRVKLYQGEVPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL
Sbjct: 266 SHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ +++S +S GL
Sbjct: 324 EAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVENRIRDAVRPDRARIQISRISHFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+E++R+R+ PS+ C CQGTG+V
Sbjct: 384 LEMSRQRLSPSLGESSHHICPRCQGTGKV 412
>gi|387771561|ref|ZP_10127720.1| ribonuclease E [Haemophilus parahaemolyticus HK385]
gi|386908611|gb|EIJ73300.1| ribonuclease E [Haemophilus parahaemolyticus HK385]
Length = 982
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 145/399 (36%), Positives = 221/399 (55%), Gaps = 30/399 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S P+G + S
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPEGYEFSGR- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IQEGQEVIVQVNKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I A+S
Sbjct: 146 DERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKNAAQSRP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+ GS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSSGSIVIDVTEALTAIDINSSRST--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+ S +SR GL+E++R+R+ PS++ S C CQGTG+V
Sbjct: 374 QFSRISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKV 412
>gi|384190588|ref|YP_005576336.1| Ribonuclease G [Bifidobacterium animalis subsp. lactis BB-12]
gi|384191729|ref|YP_005577476.1| Ribonuclease E [Bifidobacterium animalis subsp. lactis CNCM I-2494]
gi|289178080|gb|ADC85326.1| Ribonuclease G [Bifidobacterium animalis subsp. lactis BB-12]
gi|340364466|gb|AEK29757.1| Ribonuclease E [Bifidobacterium animalis subsp. lactis CNCM I-2494]
Length = 1127
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 198/333 (59%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER RLK
Sbjct: 663 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERNRLK 722
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLEGL + W I +E + G
Sbjct: 723 SIVSKIAPKDMGVIIRTAAEGASEEAIAKDLEGLTNQWAEIQR-------KREEFLHGKR 775
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR-- 466
P LL + +V+D FN+ KM+V+ YH + YL +APDL +++E +D
Sbjct: 776 PKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLDHMAPDLHNKLERWDPEEH 835
Query: 467 --IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+FD++ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 836 GGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 894
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 895 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 954
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 955 VTSLGLVQMTRKRIGQGLVEAFSEECPECKGRG 987
Score = 42.7 bits (99), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 589 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 642
>gi|421497786|ref|ZP_15944934.1| ribonuclease E [Aeromonas media WS]
gi|407183109|gb|EKE57018.1| ribonuclease E [Aeromonas media WS]
Length = 1034
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 198/329 (60%), Gaps = 14/329 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 68 VREGQEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 127
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++ P+G GL +RT G S EEL+ DL LL+ W +I H S A
Sbjct: 128 ALSGLTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQDRTA-------- 177
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ + ++DY V ++++D+P + S+++ + PD +RV+LY +
Sbjct: 178 PVLIHQESNVIVRAIRDYLRRDVGEILIDNPVIFERAKSHIELVRPDFLNRVKLYKGDVA 237
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+ F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L
Sbjct: 238 LFNHFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQT 295
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR
Sbjct: 296 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRF 355
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTG 617
GL+E++R+R+RPS+ S C CQG G
Sbjct: 356 GLLEMSRQRLRPSLNESSSHICPRCQGQG 384
>gi|421662104|ref|ZP_16102272.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC110]
gi|421693962|ref|ZP_16133594.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-692]
gi|424061285|ref|ZP_17798775.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab33333]
gi|404569801|gb|EKA74886.1| ribonuclease E/G family protein [Acinetobacter baumannii WC-692]
gi|404666967|gb|EKB34897.1| rne/Rng family ribonuclease [Acinetobacter baumannii Ab33333]
gi|408714907|gb|EKL60037.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC110]
Length = 1110
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|253996194|ref|YP_003048258.1| Rne/Rng family ribonuclease [Methylotenera mobilis JLW8]
gi|253982873|gb|ACT47731.1| ribonuclease, Rne/Rng family [Methylotenera mobilis JLW8]
Length = 920
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 147/423 (34%), Positives = 229/423 (54%), Gaps = 40/423 (9%)
Query: 209 DEEHDGDDFDVSEVLKNVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPD 266
D EH G + S + K V I EP EA F D+ + H GF P K EV
Sbjct: 28 DIEHAGKEQRKSNIYKGVITRI----EPSLEAAFVDYGQDRH-------GFLPFK-EVAR 75
Query: 267 DSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFW 324
+ G + +Q +++G ++IVQV K+ G KG LT + L R+
Sbjct: 76 SYYKEGADG----------RARIQDALKEGQELIVQVDKDERGNKGAALTTFISLAGRYL 125
Query: 325 ILITSCDRIG-VSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGL 382
+L+ + R G VSR+I G +R L+ V+A+ P+G + RT G + EELQ DL L
Sbjct: 126 VLMPNNPRGGGVSRRIEGEDRDELRDVLAQLEVPKGMSIIARTAGIGRNAEELQWDLNYL 185
Query: 383 LSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTY 442
W I A A G L+++ + ++DYF+ + ++++D+P +
Sbjct: 186 TQLWSAI-----DGASAMQAGA-----YLIYQEGSLVIRAIRDYFSSDIGEILIDTPDIH 235
Query: 443 HEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEA 502
+ ++ + P RV+LY IPLF +F IE +I + ++ V LP+GG++VI+ TEA
Sbjct: 236 EQAVQFMNHVMPSNVARVKLYQDEIPLFTRFQIEHQIESAFAREVRLPSGGAIVIDHTEA 295
Query: 503 LVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNK 562
LVS+DVN G GS E + NL AA+++AR+LRLRD+GG++V+DFIDM N+
Sbjct: 296 LVSVDVNSGRAT--RGSDIENTAFNTNLEAAEEVARQLRLRDLGGLVVIDFIDMESQRNQ 353
Query: 563 RLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEAL 622
R V ++ A+ DR+ V+ ++SR GL+E++R+R+RPS+ PC C GTG + +
Sbjct: 354 REVENALRDALHADRARVQTGKISRFGLLELSRQRLRPSLGETNHIPCPRCHGTGHIRGI 413
Query: 623 ETS 625
E++
Sbjct: 414 EST 416
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P++ AFV+ G
Sbjct: 4 MLFNATQSEELRVAIVDGQKLIDLDIEHAGKEQRKSNIYKGVITRIEPSLEAAFVDYGQD 63
Query: 138 RPSLMDIK-----HYRE 149
R + K +Y+E
Sbjct: 64 RHGFLPFKEVARSYYKE 80
>gi|119945868|ref|YP_943548.1| Rne/Rng family ribonuclease protein [Psychromonas ingrahamii 37]
gi|119864472|gb|ABM03949.1| RNAse E [Psychromonas ingrahamii 37]
Length = 1065
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/370 (35%), Positives = 211/370 (57%), Gaps = 21/370 (5%)
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
E +GF P K + + T P+G K P K +++G +VI+Q+ KE G KG
Sbjct: 62 AERHGFLPLK----EIARTYFPEGY-SFKGRPNIKDV--IKEGQEVIIQIEKEERGNKGA 114
Query: 312 TLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAG 369
LT + L + +L+ + R G +SR+I G ERT LK L+ P G GL +RT G
Sbjct: 115 ALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSHLKLPNGMGLIVRTAGVG 174
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
+ EEL+ DL L++ W+ I E A++ P L+HR + ++DY
Sbjct: 175 KTPEELEWDLNVLVNHWQAIDEAARA----------QPAPFLIHRESNVIVRSIRDYLRR 224
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
+ ++V+D +T+ +++ + PD R++LY +PLF + +E +I + + V L
Sbjct: 225 DIGEIVIDHAKTFELAKNHIAMVRPDYVSRLKLYQGEVPLFTHYQVESQIESAFQREVRL 284
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549
P+GGS+VI+ TEAL SID+N GS E+ + NL AA++IAR+LRLRD+GG++
Sbjct: 285 PSGGSIVIDPTEALTSIDINSARAT--RGSDIEETAFNTNLEAAEEIARQLRLRDLGGLV 342
Query: 550 VVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEP 609
V+DFIDM ++R V ++++V +DR+ +++ +SR GLME++R+R+RPS+ S
Sbjct: 343 VIDFIDMTPPRHQREVENRMRESVRQDRARIQLGRISRFGLMEMSRQRLRPSLGESASRV 402
Query: 610 CTCCQGTGRV 619
C C G G +
Sbjct: 403 CPRCHGQGTI 412
>gi|150008610|ref|YP_001303353.1| ribonuclease G [Parabacteroides distasonis ATCC 8503]
gi|255014408|ref|ZP_05286534.1| ribonuclease G [Bacteroides sp. 2_1_7]
gi|256841373|ref|ZP_05546880.1| ribonuclease G [Parabacteroides sp. D13]
gi|262383460|ref|ZP_06076596.1| ribonuclease G [Bacteroides sp. 2_1_33B]
gi|298376094|ref|ZP_06986050.1| ribonuclease G [Bacteroides sp. 3_1_19]
gi|410103194|ref|ZP_11298118.1| rne/Rng family ribonuclease [Parabacteroides sp. D25]
gi|423330624|ref|ZP_17308408.1| rne/Rng family ribonuclease [Parabacteroides distasonis CL03T12C09]
gi|149937034|gb|ABR43731.1| ribonuclease G [Parabacteroides distasonis ATCC 8503]
gi|256737216|gb|EEU50543.1| ribonuclease G [Parabacteroides sp. D13]
gi|262294358|gb|EEY82290.1| ribonuclease G [Bacteroides sp. 2_1_33B]
gi|298267131|gb|EFI08788.1| ribonuclease G [Bacteroides sp. 3_1_19]
gi|409232240|gb|EKN25088.1| rne/Rng family ribonuclease [Parabacteroides distasonis CL03T12C09]
gi|409237652|gb|EKN30450.1| rne/Rng family ribonuclease [Parabacteroides sp. D25]
Length = 525
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 204/329 (62%), Gaps = 14/329 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+ KE + TKGP LT+ R+ +LI D++ VS KI + ER RL+ + +
Sbjct: 119 GQEVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERARLRQLIQ 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK-NIMEHAKSAALAADEGVEGAVPIL 411
+++P+ F + +RT + G + EL +L+ L+ W+ NI++ K A P +
Sbjct: 179 SIKPKNFSVIVRTSSEGKRVAELDHELKTLMKRWEDNIVKVPKLKA-----------PAI 227
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
++ +T+++++D FN + + V+ Y+ V Y+ IAP + V+LY +P+FD
Sbjct: 228 IYEETARTVALLRDIFNPSFQNIYVNDKEVYNNVRDYVSLIAPGREEIVQLYTGELPIFD 287
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F + ++I ++ + V +G L+IE TEA+ IDVN G+ G ++EK +DVN+A
Sbjct: 288 NFAVTKQIKSLFGRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKG-SDAQEKTAIDVNIA 346
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GGIIV+DFIDMA+ +N++ ++E + KA+ DR+ + LS+ GLM
Sbjct: 347 AADEIARQLRLRDMGGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLM 406
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVE 620
+ITR+RVRP++ SE C C GTG V+
Sbjct: 407 QITRQRVRPAMDVDTSEDCPSCFGTGTVK 435
Score = 45.4 bits (106), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IAVLED+ LVEL E + +YLG V KL+P + AF+++G + + + HY +
Sbjct: 16 IAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDVGYKKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK 161
+ P F + K
Sbjct: 73 --LGPNFNTQQK 82
>gi|269967346|ref|ZP_06181407.1| ribonuclease E [Vibrio alginolyticus 40B]
gi|269828054|gb|EEZ82327.1| ribonuclease E [Vibrio alginolyticus 40B]
Length = 1024
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFLNRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|260556239|ref|ZP_05828458.1| ribonuclease E [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|260410294|gb|EEX03593.1| ribonuclease E [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|452955672|gb|EME61069.1| ribonuclease E [Acinetobacter baumannii MSP4-16]
Length = 1110
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|262393761|ref|YP_003285615.1| ribonuclease E [Vibrio sp. Ex25]
gi|262337355|gb|ACY51150.1| ribonuclease E [Vibrio sp. Ex25]
Length = 1024
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFLNRVKKYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 385 RQRLSPSLAEASHHICPRCSGTGVV 409
>gi|262280822|ref|ZP_06058605.1| ribonuclease E [Acinetobacter calcoaceticus RUH2202]
gi|262257722|gb|EEY76457.1| ribonuclease E [Acinetobacter calcoaceticus RUH2202]
Length = 1118
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNLPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|380696170|ref|ZP_09861029.1| ribonuclease G [Bacteroides faecis MAJ27]
Length = 524
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 213/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ L+ W++ M + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLIKHWEDAMAKVQKAT---------KYPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L V K
Sbjct: 409 ITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKK 460
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKFVKQTLSDKKKLNSISKATLLPD---LDKDGTVANTLKVGQ 120
>gi|417543939|ref|ZP_12195025.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC032]
gi|421666267|ref|ZP_16106359.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC087]
gi|421670861|ref|ZP_16110843.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC099]
gi|400381827|gb|EJP40505.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC032]
gi|410383158|gb|EKP35691.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC099]
gi|410388192|gb|EKP40631.1| ribonuclease E/G family protein [Acinetobacter baumannii OIFC087]
Length = 1109
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|333908044|ref|YP_004481630.1| ribonuclease, Rne/Rng family [Marinomonas posidonica IVIA-Po-181]
gi|333478050|gb|AEF54711.1| ribonuclease, Rne/Rng family [Marinomonas posidonica IVIA-Po-181]
Length = 1087
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 127/336 (37%), Positives = 196/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R++LK
Sbjct: 116 ISEGQEVIVQVDKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGISRRIDGDDRSQLKE 175
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ PE GL +RT G S EELQ DL+ L + W +I + A E
Sbjct: 176 AMSGLKTPENGGLIVRTAGVGRSTEELQWDLDYLETLWSSITKAA----------AEKPA 225
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DY E + ++++D + Y + +++ + P R++LY P
Sbjct: 226 PFLIYQESNIVIRAIRDYLREDIGEVLIDEKQAYQDAVNFVMQVMPHFKSRIKLYTDSTP 285
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF++F IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 286 LFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQT 343
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRDIGG++V+DFIDM N++ V +K A+E DR+ V++ +SR
Sbjct: 344 NLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVENRMKTALEADRARVQLGRISRF 403
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GL+E++R+R+RPS+ C C G G + +E+
Sbjct: 404 GLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVES 439
>gi|451942036|ref|YP_007462673.1| ribonuclease E [Bartonella vinsonii subsp. berkhoffii str. Winnie]
gi|451901423|gb|AGF75885.1| ribonuclease E [Bartonella vinsonii subsp. berkhoffii str. Winnie]
Length = 876
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 172/551 (31%), Positives = 275/551 (49%), Gaps = 44/551 (7%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A EE A +N + E++
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL--------ALLEEEEKAAVGENYA-----ENLP 107
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
E ++ + DE + DV + + +DD E E F H D E
Sbjct: 108 EETNKSKKRSRKTKKDERNSTIAADVEHDMTS-EAITLDDTE-----ETFNASVSHDDIE 161
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
G + E+P T K K +++ ++VQV+KE G KG L
Sbjct: 162 MVGAEDVREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAAL 211
Query: 314 TAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT A
Sbjct: 212 TTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRTAGANR 271
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L W + ++ L + P L+H ++D +N+K
Sbjct: 272 TKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLIHEESNLIKRSIRDLYNKK 321
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V L
Sbjct: 322 INEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLHPQVSLK 381
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 382 SGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRDLAGLIV 439
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDM ++ N RLV +++K+ ++ DR+ ++V +S GL+E++R+R+R SV ++PC
Sbjct: 440 IDFIDMLEERNVRLVEKKLKECLKSDRARIQVGHISHFGLLEMSRQRIRVSVLESTTQPC 499
Query: 611 TCCQGTGRVEA 621
C GTG V +
Sbjct: 500 PHCAGTGNVRS 510
>gi|445486221|ref|ZP_21457279.1| ribonuclease E/G family protein [Acinetobacter baumannii AA-014]
gi|444769706|gb|ELW93874.1| ribonuclease E/G family protein [Acinetobacter baumannii AA-014]
Length = 1110
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|328952216|ref|YP_004369550.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109]
gi|328452540|gb|AEB08369.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109]
Length = 515
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/405 (32%), Positives = 228/405 (56%), Gaps = 30/405 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I + EP +A F H E GF P P+ PQ ++
Sbjct: 37 NIYKGVISNIEPSLQAAF-------VHYGAERQGFLPISEIHPEYFQPEAPQRSRP---- 85
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG- 341
K ++KG +++VQV+KE + +KG LT Y L RF +L+ ++IG+SRKI
Sbjct: 86 ---KIQEVLKKGQELLVQVIKEEIASKGAYLTTYISLPGRFLVLLPGQEQIGISRKIEEE 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
R LK + K G GL +RT + ELQKD + L + W+ I ++A
Sbjct: 143 ARRQELKALIKEFNLTHGMGLIVRTASEAAKKRELQKDYQYLNNIWQEIKKNAG------ 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P L+++ + + ++DY+ + ++++D T+ ++ ++ + +P + +
Sbjct: 197 ----QSPAPALIYKELDLVIRTIRDYYTADINEILIDDVETFTQIKNFFKAFSPKHTNVL 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY ++ P+F K+ IEE++ + +VPL +GG +VI TEALV+IDVN G +
Sbjct: 253 KLYKEKRPIFSKYQIEEQLERLYDNQVPLKSGGGVVINPTEALVAIDVNSGRCI--SPKE 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA++IAR+LRLRD+GG+IV+DFIDM D +++ V +E+K A++++++ V
Sbjct: 311 VEETAFKTNLEAAQEIARQLRLRDLGGLIVIDFIDMKDRKHRKEVEKELKAALKKEKARV 370
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
V ++S+ GL+E++R+R+RP+V + C CQG G ++++E S
Sbjct: 371 TVGQISKFGLLELSRQRLRPAVQTSLYITCPHCQGRGLIKSVEAS 415
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN+S R+A++ED KL E LE ++Y GV++ + P++ AFV+ G
Sbjct: 1 MLINASDPEEFRVAIVEDGKLEEFALEAASREQLKGNIYKGVISNIEPSLQAAFVHYGAE 60
Query: 138 RPSLMDIKHYREPFIFP--PFRCRTKKQEV 165
R + I + P P R R K QEV
Sbjct: 61 RQGFLPISEIHPEYFQPEAPQRSRPKIQEV 90
>gi|160889024|ref|ZP_02070027.1| hypothetical protein BACUNI_01444 [Bacteroides uniformis ATCC 8492]
gi|317479305|ref|ZP_07938440.1| rne/Rng family ribonuclease [Bacteroides sp. 4_1_36]
gi|423305934|ref|ZP_17283933.1| rne/Rng family ribonuclease [Bacteroides uniformis CL03T00C23]
gi|423309522|ref|ZP_17287512.1| rne/Rng family ribonuclease [Bacteroides uniformis CL03T12C37]
gi|156861491|gb|EDO54922.1| S1 RNA binding domain protein [Bacteroides uniformis ATCC 8492]
gi|316904593|gb|EFV26412.1| rne/Rng family ribonuclease [Bacteroides sp. 4_1_36]
gi|392679921|gb|EIY73296.1| rne/Rng family ribonuclease [Bacteroides uniformis CL03T00C23]
gi|392684562|gb|EIY77887.1| rne/Rng family ribonuclease [Bacteroides uniformis CL03T12C37]
Length = 524
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/352 (36%), Positives = 213/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V++ YHE+ Y+ IAP+ V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNNEAVYHEIKDYVTLIAPERAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K + +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEANALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVEL E + ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKQLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|421789216|ref|ZP_16225478.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-82]
gi|410399146|gb|EKP51343.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-82]
Length = 1110
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|254229868|ref|ZP_04923273.1| ribonuclease E [Vibrio sp. Ex25]
gi|151937637|gb|EDN56490.1| ribonuclease E [Vibrio sp. Ex25]
Length = 1027
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 212/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFLNRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|326424118|ref|NP_761817.2| ribonuclease E [Vibrio vulnificus CMCP6]
gi|319999500|gb|AAO11344.2| Ribonuclease E [Vibrio vulnificus CMCP6]
Length = 1036
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAKEYFPDGY-SYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + ++S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWAAIKDASES----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|300112961|ref|YP_003759536.1| Rne/Rng family ribonuclease [Nitrosococcus watsonii C-113]
gi|299538898|gb|ADJ27215.1| ribonuclease, Rne/Rng family [Nitrosococcus watsonii C-113]
Length = 764
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/404 (34%), Positives = 224/404 (55%), Gaps = 28/404 (6%)
Query: 255 NGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPT 312
GF P K EV SH + PG++ +Q +++G +++VQV KE G KG
Sbjct: 65 QGFLPLK-EVTRSYFQSH-------QREPGDRPKVQEVLKEGQELVVQVEKEERGNKGAA 116
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
L+ + L R+ +L+ + R G VSR+I G ER+ L +TL+ PEG GL RT A G
Sbjct: 117 LSTFISLAGRYLVLMPNNPRAGGVSRRIEGEERSMLLEAMRTLEIPEGMGLITRTAAVGK 176
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ EELQ DL LL W++I AA EG P L+++ + ++DY
Sbjct: 177 NAEELQWDLNYLLHLWRSIQ--------AAAEG--QPAPFLIYQESDVIIRALRDYLRLD 226
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++D+P Y +++ + P +++LY ++ LF +F IE +I V LP
Sbjct: 227 IGEILIDTPDVYQRAYDFMRQVMPPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALP 286
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG++V++ TEAL +ID+N G E+ L NL AA++IAR+LRLRD+GG+IV
Sbjct: 287 SGGAIVVDYTEALTTIDINSARA--NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIV 344
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDMA N+R V +++ + DR+ V++ +SR GL+E++R+R+RPS+ C
Sbjct: 345 IDFIDMAPLRNQRAVENRLRECLREDRARVQIGRISRFGLLEMSRQRLRPSLGEAHQVVC 404
Query: 611 TCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
C G G+V +E+ + + RL+ + + T + +P
Sbjct: 405 PRCNGRGQVRGVES----LGLSVLRLIEEGAAKEKTARMVIQLP 444
>gi|296118763|ref|ZP_06837339.1| putative ribonuclease [Corynebacterium ammoniagenes DSM 20306]
gi|295968252|gb|EFG81501.1| putative ribonuclease [Corynebacterium ammoniagenes DSM 20306]
Length = 1374
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/351 (37%), Positives = 203/351 (57%), Gaps = 23/351 (6%)
Query: 284 GEKTWLQ-------------VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSC 330
GE W Q ++ G +V+VQV K+ +G KGP LT L RF + +
Sbjct: 585 GEVNWRQAGLGGRARKIEQAMKSGDQVLVQVAKDPVGHKGPRLTTQVSLPGRFLVYVPGG 644
Query: 331 DRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIM 390
G+SRK+ ER RL+ I + + PE G IRT A + E + D+ L TW I
Sbjct: 645 RNAGISRKLPAPERKRLREILEKVVPEQGGAIIRTAAENVAEEAIAADVNRLHDTWNEIK 704
Query: 391 EHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQ 450
E A+ ++ +G P+ L+ + +V+D FNE ++VVD R Y V+SY+
Sbjct: 705 EAAEK-----EKASKGTEPVALYEEPQMLVKVVRDLFNEDFDRLVVDGKRPYEVVSSYVN 759
Query: 451 DIAPDLCDRVELYDKR----IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+AP+L DRV Y++ I F+ + I+E+++ LS++V LP+GG+LVI++TEA+ +
Sbjct: 760 RLAPELADRVSRYNRADNGGIDAFETYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVV 819
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G G + E+ + NL AA++I R++RLRD+GG+IVVDFIDM N+ LV
Sbjct: 820 DVNTGK-FTGTGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVL 878
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
+K+A+ RDR+ +VSE++ GL+++TRKR+ + + S C CQG G
Sbjct: 879 RRLKEALGRDRTRHQVSEVTSLGLVQMTRKRLGSGLLEIFSTECEVCQGRG 929
>gi|37679450|ref|NP_934059.1| ribonuclease E [Vibrio vulnificus YJ016]
gi|37198194|dbj|BAC94030.1| ribonuclease E [Vibrio vulnificus YJ016]
Length = 1036
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAKEYFPDGY-SYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + ++S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWAAIKDASES----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIQLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|416892567|ref|ZP_11923891.1| ribonuclease E [Aggregatibacter aphrophilus ATCC 33389]
gi|347814265|gb|EGY30914.1| ribonuclease E [Aggregatibacter aphrophilus ATCC 33389]
Length = 959
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 197/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK
Sbjct: 91 ISEGQEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKD 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+L PEG GL +RT G S EELQ DL+ LL W+ I + ++S
Sbjct: 151 ALSSLDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++DSP+ Y + ++++ + D +RV+LY +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDSPKVYEKAKAHIKLVRLDFINRVKLYQGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++S +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIRDAVRQDRARIQISRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS+ C CQG G++
Sbjct: 379 GLLEMSRQRLSPSLGESSHHVCPRCQGMGKI 409
>gi|225351141|ref|ZP_03742164.1| hypothetical protein BIFPSEUDO_02729 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225158597|gb|EEG71839.1| hypothetical protein BIFPSEUDO_02729 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 455
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 200/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 61 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 120
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I DE + G
Sbjct: 121 NIVSKVAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERITSKR-------DEFLHGKR 173
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 174 PKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYGRIEEYLDTMAPDLKDKLEKWDPAEH 233
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 234 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 292
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 293 VTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 352
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 353 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 385
>gi|421655176|ref|ZP_16095500.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-72]
gi|408509313|gb|EKK10988.1| ribonuclease E/G family protein [Acinetobacter baumannii Naval-72]
Length = 1109
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 203/336 (60%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +GT+++VQV KE G KG L+ + L R+ +L+ + + G +SR+I+G R LK
Sbjct: 92 ITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKE 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I +L P G + +RT G + EELQ DL+ LL W I A S G
Sbjct: 152 ILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASS----------GPS 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+H+ G ++DY + V ++++DS + Y+E ++++ + P D+++ Y P
Sbjct: 202 PMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + V LP+GGS+VI+QTEALVSID+N GH E+ L+
Sbjct: 262 LFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDV--EETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG++V+DFIDM + N+R+V ++++A + DR+ ++ +LSR
Sbjct: 320 NLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ C C GTG V L +
Sbjct: 380 GLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRS 415
>gi|423219254|ref|ZP_17205750.1| rne/Rng family ribonuclease [Bacteroides caccae CL03T12C61]
gi|392626020|gb|EIY20076.1| rne/Rng family ribonuclease [Bacteroides caccae CL03T12C61]
Length = 524
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 212/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L L+ W++ M + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELRVLVKHWEDAMAKVQKAT---------KYPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVSLIAPDRANIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L V K
Sbjct: 409 ITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKK 460
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|343517297|ref|ZP_08754303.1| ribonuclease E [Vibrio sp. N418]
gi|342793621|gb|EGU29411.1| ribonuclease E [Vibrio sp. N418]
Length = 1044
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + PQG + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPQGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTMYDRALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTG 410
>gi|260767404|ref|ZP_05876342.1| ribonuclease E [Vibrio furnissii CIP 102972]
gi|260617639|gb|EEX42820.1| ribonuclease E [Vibrio furnissii CIP 102972]
Length = 1047
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 211/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-SYQGRPSIKEVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCTGTG 407
>gi|326779383|ref|ZP_08238648.1| ribonuclease, Rne/Rng family [Streptomyces griseus XylebKG-1]
gi|326659716|gb|EGE44562.1| ribonuclease, Rne/Rng family [Streptomyces griseus XylebKG-1]
Length = 964
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 202/338 (59%), Gaps = 10/338 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 288 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 347
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 348 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIRKKAK--------GTSGSNAP 399
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 400 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAPDLTERLSRWTSEVDV 459
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + N
Sbjct: 460 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNN 518
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 519 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 578
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
L+++TRKRV + SE C C G G + +E S
Sbjct: 579 LVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 616
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 191 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 249
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 250 MEAAFVDIGKGRNAVL 265
>gi|119355890|ref|YP_910534.1| ribonuclease [Chlorobium phaeobacteroides DSM 266]
gi|119353239|gb|ABL64110.1| ribonuclease, Rne/Rng family [Chlorobium phaeobacteroides DSM 266]
Length = 565
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/341 (37%), Positives = 207/341 (60%), Gaps = 14/341 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT-SCDRIGVSRKITG-VERTRLKVIAKTL 354
++VQV+KE + TKG LT+ + RF +L+ ++ VSR++ ER+RLK + +++
Sbjct: 163 ILVQVIKEPISTKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVIARKERSRLKKLVRSM 222
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+GFG IRTVA L++DLE LL+ W I E + A P L+ +
Sbjct: 223 LPDGFGAIIRTVAEMQEETLLKQDLEKLLAKWTQIEEKLQDAV----------PPQLIFK 272
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
S+++D N V ++V +SP Y E +Y+Q AP++ V LY ++PLF+ ++
Sbjct: 273 EDTIISSVLRDSLNADVTEIVANSPVIYKETLNYIQWAAPEMEKNVTLYQGKLPLFEGYS 332
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
I +++ ++ S++V L +GG ++IE TEA+V IDVN G + +E+ L NL AA+
Sbjct: 333 IAKDVESIFSRKVWLKSGGYIIIEHTEAMVVIDVNSGR--YAAKREQEENSLKTNLEAAR 390
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+I R+LRLRDIGGIIVVDFIDM D N + VY+ ++ + DR+ + +S G+M+IT
Sbjct: 391 EIVRQLRLRDIGGIIVVDFIDMLDQKNAKKVYDSMRTELRNDRAKSNILPMSDFGIMQIT 450
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
R+R+RPS+ + + C C GTG V+A T+ ++IE+ + +
Sbjct: 451 RERIRPSLMQRMGDQCPACGGTGVVQARFTTINQIERWLRK 491
>gi|153808080|ref|ZP_01960748.1| hypothetical protein BACCAC_02366 [Bacteroides caccae ATCC 43185]
gi|149128983|gb|EDM20199.1| ribonuclease, Rne/Rng family [Bacteroides caccae ATCC 43185]
Length = 484
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 212/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 79 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 138
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L L+ W++ M + A P L+
Sbjct: 139 SIKPKNFGVIVRTVAEGKRVAELDGELRVLVKHWEDAMAKVQKAT---------KYPTLI 189
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 190 YEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVSLIAPDRANIVKLYKGQLPIYDN 249
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 250 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 308
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 309 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 368
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L V K
Sbjct: 369 ITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKK 420
>gi|423713845|ref|ZP_17688105.1| rne/Rng family ribonuclease [Bartonella vinsonii subsp. arupensis
OK-94-513]
gi|395421651|gb|EJF87887.1| rne/Rng family ribonuclease [Bartonella vinsonii subsp. arupensis
OK-94-513]
Length = 876
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 173/551 (31%), Positives = 275/551 (49%), Gaps = 44/551 (7%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A EE A +N TE +
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL--------ALLEEEEKAAVGEN-----YTESLP 107
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
E +++ + DE + DV + + I+DD E E F H D E
Sbjct: 108 EETNKNKKRSRKTKKDERNSIIAADVENDMTS-EAIILDDTE-----EVFNANVSHDDIE 161
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
G + E+P T K K +++ ++VQV+KE G KG L
Sbjct: 162 MVGAEDVREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAAL 211
Query: 314 TAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT A
Sbjct: 212 TTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRTAGANR 271
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L W + ++ L + P L+H ++D +N+
Sbjct: 272 TKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLVHEESNLIKRSIRDLYNKN 321
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V L
Sbjct: 322 INEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLHPQVSLK 381
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 382 SGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRDLAGLIV 439
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDM ++ N RLV +++K+ ++ DR+ ++V +S GL+E++R+R+R SV ++PC
Sbjct: 440 IDFIDMLEERNVRLVEKKLKECLKSDRARIQVGHISHFGLLEMSRQRIRVSVLESTTQPC 499
Query: 611 TCCQGTGRVEA 621
C GTG V +
Sbjct: 500 PHCAGTGNVRS 510
>gi|297194393|ref|ZP_06911791.1| ribonuclease E and G [Streptomyces pristinaespiralis ATCC 25486]
gi|297152254|gb|EDY62707.2| ribonuclease E and G [Streptomyces pristinaespiralis ATCC 25486]
Length = 603
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/337 (38%), Positives = 200/337 (59%), Gaps = 11/337 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 195 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 254
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + AKS G P
Sbjct: 255 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKAKS----------GNAPT 304
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL DR++ + +F
Sbjct: 305 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWDTIHGYVSHVAPDLADRLQRWTSETDVF 364
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 365 AVHRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 423
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 424 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 483
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+++TRKRV + SE C C G G + +E S
Sbjct: 484 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 520
Score = 42.7 bits (99), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 98 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 156
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 157 MEAAFVDIGKGRNAVL 172
>gi|375130395|ref|YP_004992495.1| ribonuclease E [Vibrio furnissii NCTC 11218]
gi|315179569|gb|ADT86483.1| ribonuclease E [Vibrio furnissii NCTC 11218]
Length = 1044
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 211/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-SYQGRPSIKEVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSGEELEWDLNVLLNHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCTGTG 407
>gi|343510953|ref|ZP_08748144.1| ribonuclease E [Vibrio scophthalmi LMG 19158]
gi|342799899|gb|EGU35449.1| ribonuclease E [Vibrio scophthalmi LMG 19158]
Length = 1040
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + PQG + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPQGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTMYDRALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTG 410
>gi|409098982|ref|ZP_11219006.1| Rne/Rng family ribonuclease [Pedobacter agri PB92]
Length = 516
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 207/340 (60%), Gaps = 12/340 (3%)
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPE 357
VQ+ KE + TKGP L++ + R+ +L+ + I VS+KI + ER RLK I ++++P+
Sbjct: 124 VQIAKEPISTKGPRLSSDISIAGRYVVLVPFSNTISVSKKIKSNTERNRLKKIIESIKPQ 183
Query: 358 GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMG 417
FG+ IRTV+ G + E+QKDL L++ W+N ++ S + V G M
Sbjct: 184 NFGVIIRTVSEGRGVAEMQKDLLDLIAKWENFIKKVPSTE--PSKRVWGE--------MD 233
Query: 418 QTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEE 477
++ ++++D N + V +P + ++ SY+ DI+P++ V+LY ++ P+FD F IE+
Sbjct: 234 RSSTLIRDILNPDFTNVYVSTPELFDDIRSYVHDISPEMEKIVKLYKQKEPIFDHFGIEK 293
Query: 478 EINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIA 537
+I N K V LP G LV+E TEAL IDVN G+ + +E A L VN AAK+IA
Sbjct: 294 QIKNAFGKTVNLPGGAYLVVEHTEALHVIDVNSGNRTASKENQEENA-LQVNKEAAKEIA 352
Query: 538 RELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
R+LRLRD+GGI+V+DFIDM +N++++++ +++ + DR+ + S+ GL++ITR+R
Sbjct: 353 RQLRLRDMGGIVVIDFIDMHKPTNRKMLFDYLRELMLLDRAKHTILPPSKFGLVQITRQR 412
Query: 598 VRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
VRP + + E C C GTG ++A IE ++ +L
Sbjct: 413 VRPEMNIVTVEKCPACGGTGEIKASIVLMDDIENNLNYIL 452
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
++INS+ + IA++ED++LVEL E + +N +YLG + K++P + AFV++G
Sbjct: 5 LIINSTPAGVT-IALIEDKQLVELHKEQINNNYAVGDIYLGRIKKIMPGLNAAFVDVGYE 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKKQEV--NGSASAAL 173
+ + + HY + + P + K ++ NGS + L
Sbjct: 64 KDAFL---HYFD--LGPQVQSLIKLTKIKRNGSVTGTL 96
>gi|212716706|ref|ZP_03324834.1| hypothetical protein BIFCAT_01641 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660410|gb|EEB20985.1| hypothetical protein BIFCAT_01641 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 483
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/333 (39%), Positives = 202/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 89 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 148
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I AK DE + G
Sbjct: 149 NIVSKVAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERIT--AKR-----DEFLHGKR 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ KM+V+ R Y + YL +APDL D++E +D
Sbjct: 202 PKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYGRIEEYLDTMAPDLKDKLEKWDPAEH 261
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 262 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 320
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E
Sbjct: 321 VTRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAE 380
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 381 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 413
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 15 QISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 68
>gi|410694587|ref|YP_003625209.1| Ribonuclease E (RNase E) [Thiomonas sp. 3As]
gi|294341012|emb|CAZ89407.1| Ribonuclease E (RNase E) [Thiomonas sp. 3As]
Length = 1009
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/409 (35%), Positives = 227/409 (55%), Gaps = 31/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +++ EP EA F D+ E H GF P K + S +G S+
Sbjct: 40 NIYKAVVTRVEPSLEACFVDYGEERH-------GFLPFK----EISRQYFKEGVSPSQA- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ + +G +++VQV KE G KG LT L R+ +L+ + R G VSR+I G
Sbjct: 88 ---RIQDVITEGQQLLVQVEKEERGNKGAALTTIISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG L RT G S EELQ DL LL W SA A
Sbjct: 145 EDRQELRETMDQLQHPEGMSLIARTAGIGRSAEELQWDLNYLLKLW--------SAVRDA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
E +GA L+++ + ++DYF + ++++D+ + + ++ + PD DRV
Sbjct: 197 SETQKGA--FLIYQESSLVIRAIRDYFTSDIGEILIDTEDVFEQARQFMLHVMPDTVDRV 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE++I S+ V LP GG++VI+ TEALV++DVN G++
Sbjct: 255 KRYRDDLPLFSRFQIEQQIETAYSRTVNLPAGGAIVIDHTEALVAVDVNSARST--RGNA 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E L NL AA ++AR++RLRD+GG+IVVDFIDM + N+R V + ++ A+ +DR+ V
Sbjct: 313 IEDTALRTNLEAADEVARQMRLRDLGGLIVVDFIDMEEPRNQRAVEDRLRDAMRQDRARV 372
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
+VS++S+ GL+E++R+R+RP+++ C C GTG + E+S +I
Sbjct: 373 QVSKISKFGLLELSRQRLRPALSEGAYVTCPRCNGTGHIRDTESSALQI 421
>gi|334143698|ref|YP_004536854.1| ribonuclease, Rne/Rng family [Thioalkalimicrobium cyclicum ALM1]
gi|333964609|gb|AEG31375.1| ribonuclease, Rne/Rng family [Thioalkalimicrobium cyclicum ALM1]
Length = 490
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 215/363 (59%), Gaps = 20/363 (5%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIA 351
+G +V+VQVVK+ LGTKG +T + SR + + IGVS+KI VER RL+ +
Sbjct: 97 EGQRVLVQVVKDPLGTKGARVTMQVSIASRLLVYMPDEQGIGVSQKIDASVERERLREVI 156
Query: 352 KTLQPEGF----GLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA 407
K L PE G +RTVA G EL+ D+ L W+ A+ + E
Sbjct: 157 K-LIPEASSSSGGFIVRTVAEGADFHELRADVLFLQKLWEQ----------ASQKVGESK 205
Query: 408 VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI 467
P LL+ + L I++D N+ ++K+ VDS T+ ++ + + + ++ D++ Y
Sbjct: 206 KPRLLYEDLPLYLRILRDVPNDGIEKIRVDSAETFQKMKVFAKMYSLEVTDKIGHYKGDR 265
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
P+FD +NIEEEI L K+V L +GG L+I+QTEA+ +IDVN G G GH + E+ I
Sbjct: 266 PIFDLYNIEEEIQTALEKKVMLKSGGYLIIDQTEAMTTIDVNTG-GFVGH-KNLEETIYR 323
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
NL A + IAR++RLR++GGII++D IDM DD +KR VYE ++KA+ DR +SE+SR
Sbjct: 324 TNLEATQAIARQVRLRNLGGIIILDLIDMEDDEHKRHVYESLQKALTLDRVKTTISEISR 383
Query: 588 HGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTF 647
GL+E+TRKR R S+ + EPC C G G V+ ET +I +EI+R+ KS+N +
Sbjct: 384 LGLIEMTRKRTRESLERTLCEPCPMCHGRGVVKTAETVGYEIFREITRM--DKSFNAERY 441
Query: 648 YFI 650
I
Sbjct: 442 RVI 444
>gi|262409039|ref|ZP_06085584.1| ribonuclease G [Bacteroides sp. 2_1_22]
gi|294647092|ref|ZP_06724698.1| S1 RNA binding domain protein [Bacteroides ovatus SD CC 2a]
gi|294807152|ref|ZP_06765969.1| S1 RNA binding domain protein [Bacteroides xylanisolvens SD CC 1b]
gi|298481900|ref|ZP_07000090.1| ribonuclease G [Bacteroides sp. D22]
gi|336406063|ref|ZP_08586725.1| hypothetical protein HMPREF0127_04038 [Bacteroides sp. 1_1_30]
gi|345508305|ref|ZP_08787936.1| ribonuclease G [Bacteroides sp. D1]
gi|423216027|ref|ZP_17202553.1| rne/Rng family ribonuclease [Bacteroides xylanisolvens CL03T12C04]
gi|229444845|gb|EEO50636.1| ribonuclease G [Bacteroides sp. D1]
gi|262353250|gb|EEZ02345.1| ribonuclease G [Bacteroides sp. 2_1_22]
gi|292637556|gb|EFF55968.1| S1 RNA binding domain protein [Bacteroides ovatus SD CC 2a]
gi|294445652|gb|EFG14302.1| S1 RNA binding domain protein [Bacteroides xylanisolvens SD CC 1b]
gi|298272122|gb|EFI13693.1| ribonuclease G [Bacteroides sp. D22]
gi|335935609|gb|EGM97558.1| hypothetical protein HMPREF0127_04038 [Bacteroides sp. 1_1_30]
gi|392691213|gb|EIY84461.1| rne/Rng family ribonuclease [Bacteroides xylanisolvens CL03T12C04]
Length = 524
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 213/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ L+ W++ M + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLVKHWEDAMVKVQKAT---------KYPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVSLIAPDRANIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K + +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L V K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKK 460
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|167855429|ref|ZP_02478194.1| ribonuclease E [Haemophilus parasuis 29755]
gi|167853423|gb|EDS24672.1| ribonuclease E [Haemophilus parasuis 29755]
Length = 985
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/399 (36%), Positives = 221/399 (55%), Gaps = 30/399 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S PQG +
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPQGYV-FQGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IQEGAEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 146 DERLDLKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNRKVFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRAT--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+ +SR GL+E++R+R+ PS++ S C CQGTG++
Sbjct: 374 QFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKI 412
>gi|255690594|ref|ZP_05414269.1| ribonuclease G [Bacteroides finegoldii DSM 17565]
gi|260623863|gb|EEX46734.1| S1 RNA binding domain protein [Bacteroides finegoldii DSM 17565]
Length = 524
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 212/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L L+ W++ M + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELRVLIKHWEDAMVKVQKAT---------KYPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K + +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L V K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKK 460
Score = 43.1 bits (100), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKFVKQTLSDKKKLNSISKATLLPD---LDKDGTVSNTLKVGQ 120
>gi|415720301|ref|ZP_11467837.1| ribonuclease G [Gardnerella vaginalis 00703Bmash]
gi|388061800|gb|EIK84437.1| ribonuclease G [Gardnerella vaginalis 00703Bmash]
Length = 1138
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 200/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 661 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 720
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W I AK E + G
Sbjct: 721 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWDRI--EAKRQ-----EFLHGKR 773
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 774 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 833
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 834 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 892
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 893 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 952
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 953 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 985
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 560 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 617
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 618 VQNVLPSMEAAFVDIGQARNGVL 640
>gi|334147020|ref|YP_004509949.1| putative ribonuclease E [Porphyromonas gingivalis TDC60]
gi|333804176|dbj|BAK25383.1| putative ribonuclease E [Porphyromonas gingivalis TDC60]
Length = 504
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 248/455 (54%), Gaps = 40/455 (8%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGF--------FPSKSEVPDDSHT 270
V +V+ +N + +D G + F +L+ D + PS S+VP S
Sbjct: 31 VKKVMPGLNAAFVDVGYKKDAFLHYLDLGLTFDAQQKMMEMMTKSKSIPSLSKVPLGSDL 90
Query: 271 SHPQGTKDSKHTPGEKTWLQVQK-GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITS 329
P E V K G +++VQ+ KE + TKGP LTA R +L+
Sbjct: 91 ------------PKEGKIADVLKAGQQILVQIAKEPISTKGPRLTAELSFAGRSLVLVPF 138
Query: 330 CDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK- 387
D++ VS+KI + ER RL+ + +++P+ F + IRT A G EL K+L+ LL W
Sbjct: 139 ADKVSVSQKIRSAEERARLRQLIISIKPKNFSVIIRTSAEGKRASELDKELQSLLRRWDD 198
Query: 388 NIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTS 447
NI + ++ A P +++ +TL +++D FN + ++V+ ++
Sbjct: 199 NIKKLLRAKA-----------PSIVYEEASRTLGLLRDNFNPSYQSIIVNDKAFRDSLSD 247
Query: 448 YLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSID 507
Y++ IAP + V+ Y +P+FD F I ++I + + V +G L+IEQTEA+ +D
Sbjct: 248 YVELIAPGREEIVQYYQGELPIFDHFAITKQIKALFGRTVTYKSGAYLIIEQTEAMHVVD 307
Query: 508 VNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYE 567
VN G+ G + +E +DVN+AAA+++AR+LRLRD+GGIIVVDFIDM++ +++ +YE
Sbjct: 308 VNSGNRSRG-STEQEATAVDVNMAAAEELARQLRLRDMGGIIVVDFIDMSEAQHRQQLYE 366
Query: 568 EVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+ K + DR+ + LS+ G+M+ITR+RVRP++ E C C GTG+VE+
Sbjct: 367 HMVKLMSADRARHNILPLSKFGVMQITRQRVRPAMVIHTEECCPTCLGTGKVESSILFTD 426
Query: 628 KIEQEISRLLVSKSYNQSTFYFIRHI-PKRRKHLK 661
++E++++++++ Q F+ H+ P +LK
Sbjct: 427 QLEEKVAKMVMEHQVKQ----FVLHVHPYVAAYLK 457
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
+AVLED KLVEL EP + +YLG V K++P + AFV++G + + + HY
Sbjct: 1 MAVLEDGKLVELQREPRNLSFAVGDIYLGKVKKVMPGLNAAFVDVGYKKDAFL---HY 55
>gi|291444550|ref|ZP_06583940.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291347497|gb|EFE74401.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 711
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 202/338 (59%), Gaps = 10/338 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 296 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 355
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 356 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAK--------GTSGSNAP 407
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 408 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRWTSEVDV 467
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + N
Sbjct: 468 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTRNN 526
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 527 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 586
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
L+++TRKRV + SE C C G G + +E S
Sbjct: 587 LVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 624
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 220 QIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 273
>gi|290960391|ref|YP_003491573.1| hypothetical protein SCAB_60141 [Streptomyces scabiei 87.22]
gi|260649917|emb|CBG73033.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 1369
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 704 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 763
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K+ G P
Sbjct: 764 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKN----------GNAPT 813
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R++ + + +F
Sbjct: 814 LLYGEPDMTVRVVRDIFNEDFSKVIVSGEEAWETIHGYVSHVAPDLAERLQKWTSEVDVF 873
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 874 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 932
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 933 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 992
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 993 VQMTRKRVGQGLLESFSETCVHCNGRG 1019
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + +S +VYLG V ++P+
Sbjct: 607 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQSTSYVGNVYLGKVQNVLPS 665
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 666 MEAAFIDIGKGRNAVL 681
>gi|387133314|ref|YP_006299286.1| ribonuclease E/G family protein [Prevotella intermedia 17]
gi|386376162|gb|AFJ09051.1| ribonuclease E/G family protein [Prevotella intermedia 17]
Length = 523
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 147/453 (32%), Positives = 248/453 (54%), Gaps = 22/453 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + N F +V D P +
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSFAKYLKQVQSDRKRLFPIEKAN 101
Query: 279 SKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
+ + +Q +Q G +V+VQVVKE + TKGP LT R+ +LI D++ VS
Sbjct: 102 RLPDLQKDSSIQNTLQVGQEVMVQVVKEPISTKGPRLTGEISFAGRYIVLIPFGDKVNVS 161
Query: 337 RKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
KI +G ER RLK + ++++P+ FG+ +RTVA G + EL +++ L W N + +
Sbjct: 162 TKIKSGEERARLKQLIQSIRPKNFGVIVRTVAQGKRVAELDAEMKVLYGRWHNAITKVQK 221
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
P L+ G+ + +++D FN + + V+ + V +Y+ IAP+
Sbjct: 222 TQ---------ERPQLIFEEKGRAVGMLRDLFNPTYENIYVNDEEICNAVKNYVTLIAPE 272
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
+ V+ Y ++P+FD F++ ++I + K + +G +++E TEA+ +DVN G+
Sbjct: 273 KANIVKKYTGKLPIFDNFDVTKQIKSSFGKTINYGHGCYIIVEHTEAMHVVDVNSGNRTK 332
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
G +E+ LD NL AA +IAR+LRLRD+GGIIVVDFIDM +++++YE + KA+++
Sbjct: 333 EKG--QEQNALDTNLGAADEIARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKAMQK 390
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEA--LETSF--SKIEQ 631
DR+ + LS+ GLM+ITR+RVRP + ++E C C GTG++ + L T KI Q
Sbjct: 391 DRARHNILPLSKFGLMQITRQRVRPVMDVDVAEDCPTCFGTGKIRSSLLFTDLLERKIAQ 450
Query: 632 EISRLLVSKSYNQSTFYFIRHIPKRRKHLKLEY 664
++++ + K Y Y +I K LK+++
Sbjct: 451 LVNKVGIKKFYLHVHPYVAAYINKGVVSLKMKW 483
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP ++N ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQREPREANFSVGNIYIAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|219871374|ref|YP_002475749.1| ribonuclease E [Haemophilus parasuis SH0165]
gi|219691578|gb|ACL32801.1| ribonuclease E [Haemophilus parasuis SH0165]
Length = 969
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 144/399 (36%), Positives = 221/399 (55%), Gaps = 30/399 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ E +GF P K + S PQG +
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLK----EISREYFPQGYV-FQGR 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +Q+G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G
Sbjct: 88 PNIKDI--IQEGAEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 146 DERLDLKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP--- 202
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV
Sbjct: 203 -------APFLIHQESDVIVRAIRDYLRRDIGEILIDNRKVFEKAKNHIRLVRPDFINRV 255
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G
Sbjct: 256 RLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRAT--RGGD 313
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ +
Sbjct: 314 IEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARI 373
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+ +SR GL+E++R+R+ PS++ S C CQGTG++
Sbjct: 374 QFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKI 412
>gi|418357600|ref|ZP_12960292.1| ribonuclease E [Aeromonas salmonicida subsp. salmonicida 01-B526]
gi|356689189|gb|EHI53735.1| ribonuclease E [Aeromonas salmonicida subsp. salmonicida 01-B526]
Length = 1017
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 216/385 (56%), Gaps = 32/385 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 51 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 94
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 95 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 154
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL LL+ W +I H S A P+L+
Sbjct: 155 LTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQDRTA--------PVLI 204
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D P + ++++ + PD +RV+LY + LF+
Sbjct: 205 HQESNVIVRAIRDYLRRDVGEILIDDPVIFERARAHIELVRPDFLNRVKLYKGEVALFNH 264
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 265 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 322
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 323 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 382
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTG 617
++R+R+RPS+ S C CQG G
Sbjct: 383 MSRQRLRPSLNESSSHICPRCQGQG 407
>gi|239987588|ref|ZP_04708252.1| hypothetical protein SrosN1_09814, partial [Streptomyces
roseosporus NRRL 11379]
Length = 692
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 202/338 (59%), Gaps = 10/338 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 259 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 318
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 319 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIQKKAK--------GTSGSNAP 370
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 371 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTERLSRWTSEVDV 430
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + N
Sbjct: 431 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTRNN 489
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 490 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 549
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
L+++TRKRV + SE C C G G + +E S
Sbjct: 550 LVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 587
Score = 42.0 bits (97), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 183 QIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 236
>gi|223936566|ref|ZP_03628477.1| ribonuclease, Rne/Rng family [bacterium Ellin514]
gi|223894730|gb|EEF61180.1| ribonuclease, Rne/Rng family [bacterium Ellin514]
Length = 640
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 215/358 (60%), Gaps = 14/358 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKVIAK 352
G+ +IVQV K +GTKGP +T L R+ +L+ + D+ G+SRKI ER RLK I +
Sbjct: 239 GSDIIVQVTKGPIGTKGPRVTTNLVLPGRYLVLLPNSDQSGISRKIENQQERQRLKKILR 298
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
TL P+G G+ IRTV G L +DL L+ W I + K+ A E P L
Sbjct: 299 TLNIPDGMGVIIRTVGEGQQLRYFVRDLALLIEEWNLIQDRIKNQPSATCVFQE---PDL 355
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+ R V+D+ E V+++VVD+P+ Y + + I+ +V+LY +FD
Sbjct: 356 IERT-------VRDFLTEDVERIVVDNPKAYDRMREMISKISRRSASKVKLYGDSQAVFD 408
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+FNI +++ N S++V L +GG +V+++TEALV+IDVN G G +E AIL VN+
Sbjct: 409 RFNISKQLENAFSRQVHLKSGGYIVVDETEALVAIDVNTGR--HKGGKDQETAILKVNIE 466
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +I+R+LRLR++GG+IV+DFIDM +++ VY+ +K + RD++ + +S+ GLM
Sbjct: 467 AADEISRQLRLRNMGGLIVLDFIDMKSRRDQQSVYQRMKDGLRRDKAKTHILPISQLGLM 526
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYF 649
E+TR+R SV + E C C+G G+V++ T +I++++S +L +S ++S F
Sbjct: 527 EMTRQRHSESVHAAVYEECPYCKGRGKVKSALTMSVEIQRKLSEILKRRSRDESDFQL 584
>gi|333893459|ref|YP_004467334.1| RNase E [Alteromonas sp. SN2]
gi|332993477|gb|AEF03532.1| RNase E [Alteromonas sp. SN2]
Length = 1100
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 132/366 (36%), Positives = 206/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIIQIDKEERGQKGAALTTFLSLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G GL +RT G S EEL+ DL+ LL+ W+ I + A+ E
Sbjct: 154 SLNKLDLPDGMGLIVRTAGVGKSYEELEWDLKVLLTHWEAISKVAE----------EREA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D Y + ++Q + PD RV+LY +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDIGEILIDKTSIYEQALQHIQLVRPDFASRVKLYRGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V +K AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMKDAVRSDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ C C G G + E+ + I R+L +S ++T
Sbjct: 382 GLLEMSRQRLRPSLGDSAHHVCPRCSGHGTIRGTES----LALSILRILEEESIKENTGQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 IEAQLP 443
>gi|188995255|ref|YP_001929507.1| ribonuclease E [Porphyromonas gingivalis ATCC 33277]
gi|188594935|dbj|BAG33910.1| putative ribonuclease E [Porphyromonas gingivalis ATCC 33277]
Length = 519
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 247/455 (54%), Gaps = 40/455 (8%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGF--------FPSKSEVPDDSHT 270
V +V+ +N + +D G + F +L+ D + PS S+VP S
Sbjct: 46 VKKVMPGLNAAFVDVGYKKDAFLHYLDLGLTFDAQQKMMEMMTKSKSIPSLSKVPLGSDL 105
Query: 271 SHPQGTKDSKHTPGEKTWLQVQK-GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITS 329
P E V K G +++VQ+ KE + TKGP LTA R +L+
Sbjct: 106 ------------PKEGKIADVLKAGQQILVQIAKEPISTKGPRLTAELSFAGRSLVLVPF 153
Query: 330 CDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK- 387
D++ VS+KI + ER RL+ + +++P+ F + IRT A G EL K+L+ LL W
Sbjct: 154 ADKVSVSQKIRSAEERARLRQLIISIKPKNFSVIIRTSAEGKRASELDKELQSLLRRWDD 213
Query: 388 NIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTS 447
NI + ++ A P +++ +TL +++D FN + ++V+ ++
Sbjct: 214 NIKKLLRAKA-----------PSIVYEEASRTLGLLRDNFNPSYQSIIVNDKAFRDSLSD 262
Query: 448 YLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSID 507
Y++ IAP + V+ Y +P+FD F I ++I + + V +G L+IEQTEA+ +D
Sbjct: 263 YVELIAPGREEIVQYYQGELPIFDHFAITKQIKALFGRTVTYKSGAYLIIEQTEAMHVVD 322
Query: 508 VNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYE 567
VN G+ G + +E +DVN+AAA+++AR+LRLRD+GGIIVVDFIDM++ +++ +YE
Sbjct: 323 VNSGNRSRG-STEQEATAVDVNMAAAEELARQLRLRDMGGIIVVDFIDMSEAQHRQQLYE 381
Query: 568 EVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+ K + DR+ + LS+ G+M+ITR+RVRP++ E C C GTG+VE+
Sbjct: 382 HMVKLMSADRARHNILPLSKFGVMQITRQRVRPAMVIHTEECCPTCLGTGKVESSILFTD 441
Query: 628 KIEQEISRLLVSKSYNQSTFYFIRHI-PKRRKHLK 661
++E+++++++ Q F+ H+ P +LK
Sbjct: 442 QLEEKVAKMVTEHQVKQ----FVLHVHPYVAAYLK 472
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
+AVLED KLVEL EP + +YLG V K++P + AFV++G + + + HY
Sbjct: 16 MAVLEDGKLVELQREPRNLSFAVGDIYLGKVKKVMPGLNAAFVDVGYKKDAFL---HY 70
>gi|410632030|ref|ZP_11342701.1| ribonuclease E [Glaciecola arctica BSs20135]
gi|410148566|dbj|GAC19568.1| ribonuclease E [Glaciecola arctica BSs20135]
Length = 968
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/404 (36%), Positives = 219/404 (54%), Gaps = 30/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ D H GF P K + + T PQG + +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-GADRH------GFLPLK----EIARTYFPQGYR-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G VSR+I G
Sbjct: 85 PNIKEV--IREGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGVSRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G + EEL DL+ L+S W I E A S
Sbjct: 143 DERTELKAALGGLDLPDGMGLIVRTAGVGKTTEELAYDLDYLVSGWGRIKEMADSRP--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + +++ + PD +RV
Sbjct: 200 -------APFLIHQESDVVVRAIRDYLRRDIGEILIDNAVVHERALKHVEQMRPDYANRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL+SID+N GS
Sbjct: 253 KLYSGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALISIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDAGGLVVIDFIDMTPVRHQREVENRMKDAVRGDRARV 370
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++ +SR GL+E++R+R+RPS+ + C C G G V E+
Sbjct: 371 QLGRISRFGLLEMSRQRLRPSLGDSANNVCPRCSGHGSVRGTES 414
Score = 40.4 bits (93), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAD 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|302534384|ref|ZP_07286726.1| predicted protein [Streptomyces sp. C]
gi|302443279|gb|EFL15095.1| predicted protein [Streptomyces sp. C]
Length = 1071
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 202/334 (60%), Gaps = 9/334 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 392 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 451
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K ++ P
Sbjct: 452 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKQITTSS--------PS 503
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+++ + + + Y+ +APDL DR+ + + +F
Sbjct: 504 LLYGEPDMTVRVVRDIFNEDFSKVIISGDQAWETIHGYVNHVAPDLADRLSRWTSEVDVF 563
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ IDVN G G G + E+ + NL
Sbjct: 564 ATYRIDEQLAKALDRKVWLPSGGSLVIDKTEAMIVIDVNTGK-FTGQGGNLEETVTRNNL 622
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 623 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRMLECLGRDRTKHQVAEVTSLGL 682
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
+++TRKRV + SE C C G G + +ET
Sbjct: 683 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHMET 716
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 295 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEEATSYVGNVYLGKVQNVLPS 353
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 354 MEAAFIDIGKGRNAVL 369
>gi|74317582|ref|YP_315322.1| RNAse E [Thiobacillus denitrificans ATCC 25259]
gi|74057077|gb|AAZ97517.1| ribonuclease E and G [Thiobacillus denitrificans ATCC 25259]
Length = 873
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/419 (34%), Positives = 230/419 (54%), Gaps = 41/419 (9%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ ++ EP EA F D+ E +GF P K + +
Sbjct: 26 DLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDY-------GCERHGFLPFK----EIA 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ P G + ++ +++G +++VQV K+ G KG LT Y L R+ +L+
Sbjct: 75 RSCLPNGGRVPEN---------LKEGQELLVQVEKDERGNKGAALTTYVSLAGRYVVLMP 125
Query: 329 SCDRIG-VSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR+I G ER L+ +A+ PEG L RT G + EE Q DL LLS W
Sbjct: 126 TNPRGGGVSRRIEGEERNELRDTLAQLDIPEGMSLIARTAGIGRTAEEFQWDLNYLLSLW 185
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I A + GA L+++ + ++DYF+ + ++++D+ Y +
Sbjct: 186 KAID--------GASTSMSGA--FLIYQEGSLVIRAIRDYFSADIGEILIDTEDIYEQAQ 235
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P ++V+LY +PLF +F IE +I + S++V LP+GG++VI+ TEALVSI
Sbjct: 236 QFMAHVMPANVNKVKLYRDDVPLFSRFQIEHQIESAFSRQVNLPSGGAIVIDHTEALVSI 295
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ + NL AA ++AR++RLRD+GG+IV+DFIDM + ++R V
Sbjct: 296 DVNSARAT--KGSDVEQTAYNTNLEAADEVARQMRLRDLGGLIVIDFIDMENPKHQREVE 353
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ A+ DR+ V+ ++SR GL+E++R+R++PS+ PC C GTG + E+S
Sbjct: 354 NRLRDALHHDRARVQTGKISRFGLLEMSRQRLQPSLGETSYNPCPRCHGTGHIRGTESS 412
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KLV+L +E + ++Y GVVT++ P++ AFV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLVDLDIESASKEQRKGNIYKGVVTRVEPSLEAAFVDYGCE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|145299038|ref|YP_001141879.1| ribonuclease E and G [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142851810|gb|ABO90131.1| ribonuclease E and G [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 1020
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 216/385 (56%), Gaps = 32/385 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTS--HPQGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + K V++G
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EIARNYFPSGYSYQGRPNIKEV--------VREG 97
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAK 352
+VIVQ+ KE GTKG LT + L + +L+ + R G +SR+I G ERT LK ++
Sbjct: 98 QEVIVQIDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSG 157
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
P+G GL +RT G S EEL+ DL LL+ W +I H S A P+L+
Sbjct: 158 LTVPDGMGLIVRTAGVGKSPEELEWDLNVLLNHWDSI--HKASQDRTA--------PVLI 207
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY V ++++D P + ++++ + PD +RV+LY + LF+
Sbjct: 208 HQESNVIVRAIRDYLRRDVGEILIDDPVIFERARAHIELVRPDFLNRVKLYKGEVALFNH 267
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 268 FQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLEA 325
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++ +SR GL+E
Sbjct: 326 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLREAVHQDRARIQLGRISRFGLLE 385
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTG 617
++R+R+RPS+ S C CQG G
Sbjct: 386 MSRQRLRPSLNESSSHICPRCQGQG 410
>gi|440730556|ref|ZP_20910641.1| ribonuclease E [Xanthomonas translucens DAR61454]
gi|440378801|gb|ELQ15418.1| ribonuclease E [Xanthomonas translucens DAR61454]
Length = 1175
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 139/375 (37%), Positives = 215/375 (57%), Gaps = 22/375 (5%)
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
GE +GF P K E+ D + G +K T E +++G +V+VQV KE G KG
Sbjct: 62 GERHGFLPLK-EISRDYFQA---GVDHNKATIREL----LREGQEVVVQVDKEERGNKGA 113
Query: 312 TLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAG 369
LT + L R+ +L+ S GVSR+I G +R LK L P+ G+ IRT G
Sbjct: 114 ALTTFISLAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVG 173
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
EELQ DL+ LL WK+I E AALA P L+++ + ++DY
Sbjct: 174 RDAEELQWDLDYLLQVWKSIAE----AALAK------PAPFLIYQESRLIIRALRDYLRA 223
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
+ +++VD+P Y + ++Q + P +++ Y IPLF++F IE +I + V L
Sbjct: 224 DIGEILVDTPEMYGDAQEFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRL 283
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549
P+GGS+V++QTEAL ++DVN GS E NL AA+++AR+LRLRD+GG++
Sbjct: 284 PSGGSIVVDQTEALTAVDVNSSRAT--KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLV 341
Query: 550 VVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEP 609
V+DFIDMA + ++R V ++ A++ DR+ V++ +SR GL+E++R+R+RPS+
Sbjct: 342 VIDFIDMASNKHQREVENRLQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIV 401
Query: 610 CTCCQGTGRVEALET 624
C C G GR+ ++E+
Sbjct: 402 CPRCDGHGRMRSVES 416
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYGGE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|308234919|ref|ZP_07665656.1| ribonuclease G [Gardnerella vaginalis ATCC 14018 = JCM 11026]
Length = 1137
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 202/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 642 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 701
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I AK +E + G
Sbjct: 702 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 754
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 755 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 814
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 815 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 873
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 874 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 933
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 934 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 966
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 541 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 598
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 599 VQNVLPSMEAAFVDIGQARNGVL 621
>gi|119478177|ref|ZP_01618233.1| ribonuclease E [marine gamma proteobacterium HTCC2143]
gi|119448686|gb|EAW29930.1| ribonuclease E [marine gamma proteobacterium HTCC2143]
Length = 956
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 216/399 (54%), Gaps = 29/399 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F DF D H GF P K E+ D P +
Sbjct: 53 NIYKGTITRVEPSLEAAFIDF-GADRH------GFLPLK-EISRDYFYRQPSDVQGRF-- 102
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
K V++GT+VIVQV KE G KG LT + L R+ +L+ + R G +SR I G
Sbjct: 103 ---KIRDVVKEGTEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRSIEG 159
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER+ LK + P+G G +RT A G S EELQ DL+ W I + A+
Sbjct: 160 EERSDLKDALNNMAIPKGMGAIVRTAAVGRSAEELQWDLDYQAQIWDAIKKAAE------ 213
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+LL + + ++DY E + ++++D+ Y + +++ I P R+
Sbjct: 214 ----DQPAPLLLLQDSNVIIRAIRDYLREDIDQVLIDAEEAYTDAMNFVTRIMPHYESRI 269
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
LY +PLF+++ IE +I + V LP+GGS+VI+ TEALVSID+N G +
Sbjct: 270 RLYQDPVPLFNRYQIESQIETAFQRDVDLPSGGSIVIDPTEALVSIDINSARAT--KGGN 327
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L NL AA +IAR+LRLRD+GG+IV+DFIDM+ N+R V ++ A+ DR+ V
Sbjct: 328 IEETALQTNLEAADEIARQLRLRDMGGLIVIDFIDMSAAKNQRAVENRMRDALNIDRARV 387
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+V +SR GL+E++R+R+RPS+ ++ C C G G +
Sbjct: 388 QVGRISRFGLLEMSRQRLRPSLGETSAKVCPRCTGQGTI 426
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 51/87 (58%), Gaps = 10/87 (11%)
Query: 73 FVSTV--ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQC-DSVYLGVVTKLVPNMGG 129
FVS + +LIN++ R+ +++ ++L +L +E ++ VQ D++Y G +T++ P++
Sbjct: 10 FVSNMKRMLINATQPEELRVGLVDGQRLYDLDIE-NRTRVQMKDNIYKGTITRVEPSLEA 68
Query: 130 AFVNIGNSRPSLMDIKH------YREP 150
AF++ G R + +K YR+P
Sbjct: 69 AFIDFGADRHGFLPLKEISRDYFYRQP 95
>gi|34540961|ref|NP_905440.1| ribonuclease [Porphyromonas gingivalis W83]
gi|419971216|ref|ZP_14486677.1| ribonuclease E/G family protein [Porphyromonas gingivalis W50]
gi|34397276|gb|AAQ66339.1| ribonuclease, Rne/Rng family [Porphyromonas gingivalis W83]
gi|392609079|gb|EIW91900.1| ribonuclease E/G family protein [Porphyromonas gingivalis W50]
Length = 504
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 247/455 (54%), Gaps = 40/455 (8%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGF--------FPSKSEVPDDSHT 270
V +V+ +N + +D G + F +L+ D + PS S+VP S
Sbjct: 31 VKKVMPGLNAAFVDVGYKKDAFLHYLDLGLTFDAQQKMMEMMTKSKSIPSLSKVPLGSDL 90
Query: 271 SHPQGTKDSKHTPGEKTWLQVQK-GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITS 329
P E V K G +++VQ+ KE + TKGP LTA R +L+
Sbjct: 91 ------------PKEGKIADVLKAGQQILVQIAKEPISTKGPRLTAELSFAGRSLVLVPF 138
Query: 330 CDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK- 387
D++ VS+KI + ER RL+ + +++P+ F + IRT A G EL K+L+ LL W
Sbjct: 139 ADKVSVSQKIRSAEERARLRQLIISIKPKNFSVIIRTSAEGKRASELDKELQSLLRRWDD 198
Query: 388 NIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTS 447
NI + ++ A P +++ +TL +++D FN + ++V+ ++
Sbjct: 199 NIKKLLRAKA-----------PSIVYEEASRTLGLLRDNFNPSYQSIIVNDKAFRDSLSD 247
Query: 448 YLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSID 507
Y++ IAP + V+ Y +P+FD F I ++I + + V +G L+IEQTEA+ +D
Sbjct: 248 YVELIAPGREEIVQYYQGELPIFDHFAITKQIKALFGRTVTYKSGAYLIIEQTEAMHVVD 307
Query: 508 VNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYE 567
VN G+ G + +E +DVN+AAA+++AR+LRLRD+GGIIVVDFIDM++ +++ +YE
Sbjct: 308 VNSGNRSRG-STEQEATAVDVNMAAAEELARQLRLRDMGGIIVVDFIDMSEAQHRQQLYE 366
Query: 568 EVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+ K + DR+ + LS+ G+M+ITR+RVRP++ E C C GTG+VE+
Sbjct: 367 HMVKLMSADRARHNILPLSKFGVMQITRQRVRPAMVIHTEECCPTCLGTGKVESSILFTD 426
Query: 628 KIEQEISRLLVSKSYNQSTFYFIRHI-PKRRKHLK 661
++E+++++++ Q F+ H+ P +LK
Sbjct: 427 QLEEKVAKMVTEHQVKQ----FVLHVHPYVAAYLK 457
Score = 47.8 bits (112), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
+AVLED KLVEL EP + +YLG V K++P + AFV++G + + + HY
Sbjct: 1 MAVLEDGKLVELQREPRNLSFAVGDIYLGKVKKVMPGLNAAFVDVGYKKDAFL---HY 55
>gi|323495018|ref|ZP_08100107.1| ribonuclease E [Vibrio brasiliensis LMG 20546]
gi|323310675|gb|EGA63850.1| ribonuclease E [Vibrio brasiliensis LMG 20546]
Length = 980
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 214/385 (55%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + + + A P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDA----------NAAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V ++ +V DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDSVRMDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|379057934|ref|ZP_09848460.1| ribonuclease, Rne/Rng family protein [Serinicoccus profundi MCCC
1A05965]
Length = 873
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/329 (39%), Positives = 194/329 (58%), Gaps = 11/329 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 371 LKSGESVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPGNSMTGISRKLPDTERSRLKKI 430
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G+ +RT A G S EL+ D+E L + W+ I AK+A P
Sbjct: 431 LKEVVPSDAGVIVRTAAEGASEAELRADVERLTAMWERIEAKAKTAN----------APS 480
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LLH T+ +++D FNE K+VV + + EV Y+ ++APDL +RVE +F
Sbjct: 481 LLHGEPDMTVRVIRDVFNEDFAKLVVSGEKAWDEVKHYIDEVAPDLAERVEKATGTTDVF 540
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ + E I + ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + N+
Sbjct: 541 TTYRVHEAIAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNI 599
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 600 EAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLLECLGRDRTKHQVAEVTSLGL 659
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+++TRKRV + + SE C C G G V
Sbjct: 660 VQMTRKRVGSGLIEVFSETCVHCSGRGVV 688
>gi|163751082|ref|ZP_02158313.1| ribonuclease E [Shewanella benthica KT99]
gi|161329243|gb|EDQ00242.1| ribonuclease E [Shewanella benthica KT99]
Length = 1052
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 190/336 (56%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 91 IKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G GL +RT G EL DL+ L W I E + V
Sbjct: 151 ALSELDIPNGMGLIVRTAGVGKDSAELAWDLKVLAHHWTAIKEAS----------VGRPA 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD DR++ YD +P
Sbjct: 201 PFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEAKQHVALVRPDFADRIKHYDAEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L+
Sbjct: 261 LFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHLDRARVQLGRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + E+
Sbjct: 379 GLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTES 414
>gi|444426073|ref|ZP_21221500.1| ribonuclease E [Vibrio campbellii CAIM 519 = NBRC 15631]
gi|444240697|gb|ELU52233.1| ribonuclease E [Vibrio campbellii CAIM 519 = NBRC 15631]
Length = 1032
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIKLVRPDFISRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|357413469|ref|YP_004925205.1| ribonuclease, Rne/Rng family [Streptomyces flavogriseus ATCC 33331]
gi|320010838|gb|ADW05688.1| ribonuclease, Rne/Rng family [Streptomyces flavogriseus ATCC 33331]
Length = 1397
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/337 (37%), Positives = 200/337 (59%), Gaps = 8/337 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 737 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 796
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L W+ I + AK+ + + P
Sbjct: 797 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEEIQKKAKNTSSSN-------APT 849
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 850 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLTDRLSRWTSEVDVF 909
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 910 ATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTKNNL 968
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 969 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1028
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
+++TRKRV + SE C C G G + +E S
Sbjct: 1029 VQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 1065
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 640 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 698
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 699 MEAAFVDIGKGRNAVL 714
>gi|408826924|ref|ZP_11211814.1| ribonuclease, Rne/Rng family [Streptomyces somaliensis DSM 40738]
Length = 1398
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 197/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 733 LKSGQPVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 792
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W+ I + A++ G P
Sbjct: 793 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIQQKART----------GNAPT 842
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+V+ + + Y+ +APDL +R++ + + +F
Sbjct: 843 LLYGEPDMTVRVVRDIFNEDFSKVVISGDEAWQTIHGYVSHVAPDLANRLQRWTSEVDVF 902
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 903 ATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 961
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 962 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1021
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 1022 VQMTRKRVGQGLLESFSETCVHCNGRG 1048
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 657 QIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 710
>gi|221135370|ref|ZP_03561673.1| ribonuclease [Glaciecola sp. HTCC2999]
Length = 968
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 196/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VI+Q+ KE G KG LT + L + +L+ + R G +SR+I G ER+ LK
Sbjct: 94 VKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERSELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G S EEL DL+ LL+ W+ I A+ E
Sbjct: 154 TLDQLELPKGMGLIVRTAGVGKSFEELAWDLKVLLTHWEAITAVAE----------ERPA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D P + + +++ + PD +RV+ Y +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEIIIDKPAIFEQALQHIELVRPDFANRVKPYTGDVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ +
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETAFNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+D+IDM+ + ++R V +K AV DR+ +++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDYIDMSVNKHQREVENRMKDAVSGDRARIQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GL+E++R+R+RPS+ C C GTG V E+
Sbjct: 382 GLLEMSRQRLRPSLGESAHNVCPRCAGTGTVRGTES 417
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQSEELRVALVDGQKLYDLDIESPGHEQKKANIYKGTITRVEPSLEAAFVDYGAD 63
Query: 138 RPSLMDIK----HY 147
R + +K HY
Sbjct: 64 RHGFLPLKEIARHY 77
>gi|423302253|ref|ZP_17280276.1| rne/Rng family ribonuclease [Bacteroides finegoldii CL09T03C10]
gi|408471344|gb|EKJ89876.1| rne/Rng family ribonuclease [Bacteroides finegoldii CL09T03C10]
Length = 524
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 211/352 (59%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L L+ W++ M + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELRVLIKHWEDAMVKVQKAT---------KYPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIKDYVTLIAPDRANIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K + +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ T SKI+ +++L V K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTNTLESKIDYLVNKLKVKK 460
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKFVKQTLSDKKKLNSISKATLLPD---LDKDGTVSNTLKVGQ 120
>gi|193211693|ref|YP_001997646.1| ribonuclease, Rne/Rng family [Chlorobaculum parvum NCIB 8327]
gi|193085170|gb|ACF10446.1| ribonuclease, Rne/Rng family [Chlorobaculum parvum NCIB 8327]
Length = 560
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/346 (37%), Positives = 207/346 (59%), Gaps = 14/346 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT-SCDRIGVSRKITG-VERTRLKVIAKTL 354
++VQV+KE +GTKG LT+ + RF +L+ +I VSR++ ER RLK + +++
Sbjct: 160 ILVQVIKEPIGTKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERGRLKKLVRSM 219
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEGFG IRTVA L++DLE LL WK I E + A P L+ +
Sbjct: 220 LPEGFGAIIRTVAEMQDETLLKQDLEKLLVKWKQIEEKLQDAK----------PPQLIFK 269
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
S+++D V ++V +S Y E +Y+Q APD+ V L++ ++PLF+ +
Sbjct: 270 EDTIISSVLRDSLTTDVTEIVANSNSIYTETLNYIQWAAPDMVKNVSLHEGKLPLFEGYG 329
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
I +++ ++ S++V L +GG ++IE TEA+V +DVN G + +E+ L NL AA+
Sbjct: 330 IAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGR--YAAKREQEENSLKTNLEAAR 387
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+I R+LRLRDIGGIIVVDFIDM D N + VY+ +K + DR+ + LS G+M+IT
Sbjct: 388 EIVRQLRLRDIGGIIVVDFIDMIDAKNSKKVYDAMKTELRNDRAKSNILPLSDFGIMQIT 447
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSK 640
R+R+RPS+ + + C C GTG V+A T+ +++E+ + + + +
Sbjct: 448 RERIRPSLMQRMGDQCPACGGTGVVQARFTTINQVERWLRKFALQQ 493
>gi|240948236|ref|ZP_04752622.1| ribonuclease E [Actinobacillus minor NM305]
gi|240297275|gb|EER47816.1| ribonuclease E [Actinobacillus minor NM305]
Length = 973
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 143/403 (35%), Positives = 219/403 (54%), Gaps = 38/403 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPSDYVFNGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I A+S
Sbjct: 142 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKNAAQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
R+ ++ S +SR GL+E++R+R+ PS++ S C CQGTG+V
Sbjct: 370 RARIQFSRISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKV 412
>gi|340348478|ref|ZP_08671562.1| ribonuclease G [Prevotella dentalis DSM 3688]
gi|433653183|ref|YP_007297037.1| ribonuclease, Rne/Rng family [Prevotella dentalis DSM 3688]
gi|339607047|gb|EGQ11999.1| ribonuclease G [Prevotella dentalis DSM 3688]
gi|433303716|gb|AGB29531.1| ribonuclease, Rne/Rng family [Prevotella dentalis DSM 3688]
Length = 524
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 145/434 (33%), Positives = 241/434 (55%), Gaps = 27/434 (6%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK- 277
V +++ +N +D G F +L+ L + N + +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYLKQVQSDRKKLYPFAKAS 101
Query: 278 ---DSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D K +T L V G +V+VQVVKE + TKGP LT RF +L+ D++
Sbjct: 102 RLPDLKKDGSVQTTLTV--GQEVLVQVVKEPISTKGPRLTGELSFAGRFLVLMPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++P+ G+ +RTVA G + EL +L+ L W++ +
Sbjct: 160 VSTKIKSGEERARLKQLIHSIKPKNCGVIVRTVAEGKRVAELDAELKILNKRWEDAIAKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ + P L++ G+ +++++D FN + + V+ + EV Y+ IA
Sbjct: 220 QKTQ---------SRPQLVYEETGRAVALLRDLFNPSYENIFVNDEDVFKEVKDYVGLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+ Y ++P+FD F+I ++I + K V +G L+IE TEA+ +DVN G+
Sbjct: 271 PEKVRIVKPYTGKVPIFDNFSITKQIKSSFGKTVNYAHGAYLIIEHTEAMHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ +E LD NL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + KA+
Sbjct: 331 S-KNEKGQEGTALDTNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKAM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS-----K 628
++DR+ + LS+ GLM+ITR+RVRP++ + E C C G+G++++ F+ K
Sbjct: 390 QKDRARHNILPLSKFGLMQITRQRVRPAMDVNVEETCPTCNGSGKIKS-SILFTDQLEGK 448
Query: 629 IEQEISRLLVSKSY 642
I+Q ++++ V K Y
Sbjct: 449 IDQLVNKIGVRKFY 462
Score = 47.0 bits (110), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP +N ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQNEPRSANFSVGNIYIAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|160886224|ref|ZP_02067227.1| hypothetical protein BACOVA_04231 [Bacteroides ovatus ATCC 8483]
gi|423289400|ref|ZP_17268250.1| rne/Rng family ribonuclease [Bacteroides ovatus CL02T12C04]
gi|156108109|gb|EDO09854.1| S1 RNA binding domain protein [Bacteroides ovatus ATCC 8483]
gi|392668096|gb|EIY61601.1| rne/Rng family ribonuclease [Bacteroides ovatus CL02T12C04]
Length = 524
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/352 (36%), Positives = 213/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ L+ W++ M + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLVKHWEDAMVKVQKAT---------KYPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVYNEIRDYVSLIAPDRANIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L V K
Sbjct: 409 ITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKVKK 460
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|393788968|ref|ZP_10377092.1| rne/Rng family ribonuclease [Bacteroides nordii CL02T12C05]
gi|392652947|gb|EIY46604.1| rne/Rng family ribonuclease [Bacteroides nordii CL02T12C05]
Length = 524
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 213/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ L+ W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLIKHWEDAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V++ Y+E+ Y+ IAPD + V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIYVNNEAVYNEIKDYVTLIAPDRAEIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K + +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTISYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTMETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG V KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKFVKQTLSDKKKLNSISKATLLPD---LDKDGTVANTLKVGQ 120
>gi|424046880|ref|ZP_17784442.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HENC-03]
gi|408884940|gb|EKM23668.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HENC-03]
Length = 1029
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD RV+ Y+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAREHIQLVRPDFISRVKKYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 385 RQRLSPSLAEASHHICPRCSGTGVV 409
>gi|301309508|ref|ZP_07215450.1| ribonuclease G [Bacteroides sp. 20_3]
gi|423338002|ref|ZP_17315745.1| rne/Rng family ribonuclease [Parabacteroides distasonis CL09T03C24]
gi|300832597|gb|EFK63225.1| ribonuclease G [Bacteroides sp. 20_3]
gi|409235511|gb|EKN28328.1| rne/Rng family ribonuclease [Parabacteroides distasonis CL09T03C24]
Length = 525
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 125/329 (37%), Positives = 204/329 (62%), Gaps = 14/329 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+ KE + TKGP LT+ R+ +LI D++ VS KI + ER RL+ + +
Sbjct: 119 GQEVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERARLRQLIQ 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK-NIMEHAKSAALAADEGVEGAVPIL 411
+++P+ F + +RT + G + EL +L+ L+ W+ NI++ K A P +
Sbjct: 179 SIKPKNFSVIVRTSSEGKRVAELDHELKTLVKRWEDNIVKVPKLKA-----------PAI 227
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
++ +T+++++D FN + + V+ Y+ V Y+ IAP + V+LY +P+FD
Sbjct: 228 VYEETARTVALLRDIFNPSFQNIYVNDKEVYNNVRDYVSLIAPGREEIVQLYTGELPIFD 287
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F + ++I ++ + V +G L+IE TEA+ IDVN G+ G ++EK +DVN+A
Sbjct: 288 NFAVTKQIKSLFGRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKG-SDAQEKTAIDVNIA 346
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GGIIV+DFIDMA+ +N++ ++E + KA+ DR+ + LS+ GLM
Sbjct: 347 AADEIARQLRLRDMGGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLM 406
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVE 620
+ITR+RVRP++ SE C C GTG V+
Sbjct: 407 QITRQRVRPAMDVDTSEDCPSCFGTGTVK 435
Score = 45.4 bits (106), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IAVLED+ LVEL E + +YLG V KL+P + AF+++G + + + HY +
Sbjct: 16 IAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDVGYKKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK 161
+ P F + K
Sbjct: 73 --LGPNFNTQQK 82
>gi|189466528|ref|ZP_03015313.1| hypothetical protein BACINT_02903 [Bacteroides intestinalis DSM
17393]
gi|224540250|ref|ZP_03680789.1| hypothetical protein BACCELL_05163 [Bacteroides cellulosilyticus
DSM 14838]
gi|189434792|gb|EDV03777.1| ribonuclease, Rne/Rng family [Bacteroides intestinalis DSM 17393]
gi|224518129|gb|EEF87234.1| hypothetical protein BACCELL_05163 [Bacteroides cellulosilyticus
DSM 14838]
Length = 524
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 212/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAVTKIQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ +HE+ Y+ IAPD V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVFHEIKDYVTLIAPDRAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEANALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNLSFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|415724342|ref|ZP_11469830.1| ribonuclease G [Gardnerella vaginalis 00703C2mash]
gi|388062498|gb|EIK85107.1| ribonuclease G [Gardnerella vaginalis 00703C2mash]
Length = 1129
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 200/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 652 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 711
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W I AK E + G
Sbjct: 712 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWDRI--EAKRQ-----EFLHGKR 764
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 765 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 824
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 825 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 883
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 884 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 943
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 944 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 976
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 551 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 608
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 609 VQNVLPSMEAAFVDIGQARNGVL 631
>gi|257465575|ref|ZP_05629946.1| ribonuclease E [Actinobacillus minor 202]
gi|257451235|gb|EEV25278.1| ribonuclease E [Actinobacillus minor 202]
Length = 970
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 143/403 (35%), Positives = 219/403 (54%), Gaps = 38/403 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPADYVFNGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I A+S
Sbjct: 142 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKNAAQSR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
R+ ++ S +SR GL+E++R+R+ PS++ S C CQGTG+V
Sbjct: 370 RARIQFSRISRFGLLEMSRQRLSPSLSEASSHICPRCQGTGKV 412
>gi|227118477|ref|YP_002820373.1| ribonuclease E [Vibrio cholerae O395]
gi|227013927|gb|ACP10137.1| ribonuclease E [Vibrio cholerae O395]
Length = 1052
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 211/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LTA+ L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTAFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|402834768|ref|ZP_10883361.1| ribonuclease E/G family protein [Selenomonas sp. CM52]
gi|402277091|gb|EJU26182.1| ribonuclease E/G family protein [Selenomonas sp. CM52]
Length = 479
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 138/385 (35%), Positives = 212/385 (55%), Gaps = 26/385 (6%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPT 312
E N F VP + K TP + + G ++ VQ+ K+ +GTKGP
Sbjct: 62 EKNAFLYIGDGVPHEGA---------QKTTPAAR----IHIGQRLPVQITKDAIGTKGPR 108
Query: 313 LTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHS 371
T + + R +L+ + IG+SR+I G ER RL+ IA + P G GL IRT A G +
Sbjct: 109 ATMHLSIPGRNVVLMPTAAYIGISRRIEGEAERARLREIAARICPAGMGLIIRTAAHGQT 168
Query: 372 LEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKV 431
E Q+D++ L+ W+ + K A P LL+R + +V+D F E++
Sbjct: 169 EESFQEDVDRLVRLWQTLQAKNKMAK----------APALLYRDADLIVRLVRDSFTEEI 218
Query: 432 KKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPN 491
+ +D V ++ I+P+L RV LY++R PLF ++ +EEEI + + V LP+
Sbjct: 219 DALYIDDADACRRVKELVESISPELAQRVHLYEEREPLFRRYGVEEEIERLGEREVVLPS 278
Query: 492 GGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVV 551
GGS+VI++TEAL +IDVN G + ++ + NL AA +I +++RLRDIGGII+V
Sbjct: 279 GGSIVIDKTEALTAIDVNTGR--YVGKANLGDTVYRTNLEAAAEILKQIRLRDIGGIILV 336
Query: 552 DFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCT 611
DFIDM D K + ++ V DR+ + +++ GL+EITRK+ R ++ +I PC
Sbjct: 337 DFIDMDTDEQKEKLLAFLRDRVRFDRTKTNIVDITALGLIEITRKKSRQNLESIIYSPCP 396
Query: 612 CCQGTGRVEALETSFSKIEQEISRL 636
C G GRVE+ ET +I ++I RL
Sbjct: 397 YCHGRGRVESPETIAIRICRDIRRL 421
>gi|294791357|ref|ZP_06756514.1| ribonuclease, Rne/Rng family [Scardovia inopinata F0304]
gi|294457828|gb|EFG26182.1| ribonuclease, Rne/Rng family [Scardovia inopinata F0304]
Length = 941
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 199/338 (58%), Gaps = 12/338 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LTA + R+ +L+ + GVSRK+ ERTRLK I
Sbjct: 523 GDNVLVQVTKDPIGHKGARLTAQITVAGRYLVLVPAGGITGVSRKLPERERTRLKNIVSK 582
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ IRT A G S E +Q DLE L+ W+N+ + K E P LL
Sbjct: 583 IAPDNMGVIIRTAADGASEEAIQHDLEHLVKKWENVEKKLK-------EYQSSKRPHLLQ 635
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKR----IPL 469
+ +++D FN+ KK+VV+ Y+ + YL++ APD+ DR+E +D +
Sbjct: 636 GEPDVVIRVIRDIFNDDFKKLVVEGDSVYNRIKEYLEEAAPDMLDRLEKWDPEEHEGKDV 695
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FDK++I+ ++ + ++V LP+GGSL++++TEA+ +IDVN G G G S E + N
Sbjct: 696 FDKWSIDSQLRKGMERKVYLPSGGSLIVDRTEAMTTIDVNTGR-FIGKGQSLEATVTKCN 754
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRDIGG+I++DF+DM N+ LV + + + RDR+ +V+E++ G
Sbjct: 755 LEAAEEIVRQLRLRDIGGMIMIDFVDMVMPQNRDLVLRRLVECLSRDRTKHQVAEVTSLG 814
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
L+++TRKRV + SE C C G G + E + S
Sbjct: 815 LVQMTRKRVGQGLVEAFSEECPTCAGRGFILHTEPTVS 852
Score = 39.3 bits (90), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
SL+++ +F++ ++ + +R ++V+ED LVE + ++ ++Y G V
Sbjct: 416 SLVTEQDFLARRENVDRLMVVRERGRHSQVSVIEDNVLVEHYISDIEEVSSVGNIYQGRV 475
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R ++
Sbjct: 476 QNVLPSMEAAFVDIGQYRNGVL 497
>gi|311114204|ref|YP_003985425.1| Rne/Rng family ribonuclease [Gardnerella vaginalis ATCC 14019]
gi|310945698|gb|ADP38402.1| Rne/Rng family ribonuclease [Gardnerella vaginalis ATCC 14019]
Length = 1176
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 202/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 671 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 730
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I AK +E + G
Sbjct: 731 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 783
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 784 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 843
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 844 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 902
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 903 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 962
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 963 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 995
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 570 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 627
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 628 VQNVLPSMEAAFVDIGQARNGVL 650
>gi|415707925|ref|ZP_11462372.1| ribonuclease G [Gardnerella vaginalis 0288E]
gi|388053019|gb|EIK76018.1| ribonuclease G [Gardnerella vaginalis 0288E]
Length = 1135
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 202/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 642 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 701
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I AK +E + G
Sbjct: 702 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 754
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 755 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 814
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 815 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 873
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 874 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 933
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 934 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 966
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 541 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 598
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 599 VQNVLPSMEAAFVDIGQARNGVL 621
>gi|308049099|ref|YP_003912665.1| RNAse E [Ferrimonas balearica DSM 9799]
gi|307631289|gb|ADN75591.1| RNAse E [Ferrimonas balearica DSM 9799]
Length = 1099
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 205/366 (56%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE GTKG LT + L + +L+ + R G +SR+I G ER+ LK
Sbjct: 94 IKEGQEVIVQVDKEERGTKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERSELKD 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G GL +RT G + EEL DL LL W I + A S
Sbjct: 154 ALSKLQVPQGMGLIVRTAGVGKAAEELADDLRVLLHHWDAIKQAADSRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL+H+ + ++DY + ++++D PR + + ++ + PD +++ Y +P
Sbjct: 204 PILIHQESNVIVRAIRDYLRSDIGEILIDHPRIFEQAKEHISLVRPDALSKLKQYQSEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL ++D+N G E+ L
Sbjct: 264 LFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTAVDINSARAT--KGGDIEETALQT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMGPVRHQREVENRLRDAVRQDRARVQIGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ + C C G G + E+ + I RL+ ++ ++T
Sbjct: 382 GLLEMSRQRLRPSLGESAAHLCPRCNGQGTIRGTES----LALSILRLMEEEAIKENTAQ 437
Query: 649 FIRHIP 654
+P
Sbjct: 438 IEAQVP 443
>gi|260776341|ref|ZP_05885236.1| ribonuclease E [Vibrio coralliilyticus ATCC BAA-450]
gi|260607564|gb|EEX33829.1| ribonuclease E [Vibrio coralliilyticus ATCC BAA-450]
Length = 973
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/388 (36%), Positives = 211/388 (54%), Gaps = 34/388 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKS---EVPDDSHTSHPQGTKDSKHTPGEKTWLQVQK 293
EA F D+ E +GF P K E D +T QG K + +
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIAREYFPDGYTY--QGRPSIKEV--------LTE 93
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK
Sbjct: 94 GQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALD 153
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
TL P+G GL +RT G S EEL+ DL LL+ W I + + + P+L
Sbjct: 154 TLDLPKGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKQASDA----------NPAPLL 203
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + ++++DS Y ++Q + PD +RV+ YD +PLF
Sbjct: 204 IHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIQLVRPDFVNRVKKYDGEVPLFS 263
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL
Sbjct: 264 HYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLE 321
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR GL+
Sbjct: 322 AADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRLDRARVQIGRISRFGLL 381
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRV 619
E++R+R+ PS+ C C GTG V
Sbjct: 382 EMSRQRLSPSLAEASHHICPRCSGTGVV 409
>gi|262167653|ref|ZP_06035356.1| ribonuclease E [Vibrio cholerae RC27]
gi|262023858|gb|EEY42556.1| ribonuclease E [Vibrio cholerae RC27]
Length = 1049
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 211/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LTA+ L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTAFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|388599758|ref|ZP_10158154.1| ribonuclease E [Vibrio campbellii DS40M4]
Length = 1032
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIKLVRPDFISRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|156975191|ref|YP_001446098.1| ribonuclease E [Vibrio harveyi ATCC BAA-1116]
gi|156526785|gb|ABU71871.1| hypothetical protein VIBHAR_02918 [Vibrio harveyi ATCC BAA-1116]
Length = 1035
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIKLVRPDFISRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|402567166|ref|YP_006616511.1| ribonuclease [Burkholderia cepacia GG4]
gi|402248363|gb|AFQ48817.1| ribonuclease [Burkholderia cepacia GG4]
Length = 1055
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNAGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|403530479|ref|YP_006665008.1| ribonuclease E [Bartonella quintana RM-11]
gi|403232551|gb|AFR26294.1| ribonuclease E [Bartonella quintana RM-11]
Length = 876
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 168/555 (30%), Positives = 274/555 (49%), Gaps = 52/555 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A LEE E +
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL----------ALLEEE-------------EKAS 97
Query: 194 EADSQDDLVQFEHNDDEEHD---GDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGD-HH 249
++ D + E N +++ D + +V +II D D E+ + D H
Sbjct: 98 GGENHSDALIEETNKNKKRSRKTKKDQKNKIMAADVENAIISDAITTDDAEEAFDSDISH 157
Query: 250 LDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTK 309
E G + E+P T + K +++ ++VQ++KE G K
Sbjct: 158 DYIEMVGTEDVREELP----------TYQRRQGRQYKIQEVIKRRQILLVQIIKEERGNK 207
Query: 310 GPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTV 366
G LT Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT
Sbjct: 208 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRTA 267
Query: 367 AAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDY 426
A + E+++D E L W + ++ L + P L+H ++D
Sbjct: 268 GANRTKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLVHEESNLIKRSIRDL 317
Query: 427 FNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKR 486
+N+ + +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +
Sbjct: 318 YNKNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDLIPIFVRNNIEIQLDKMLHPQ 377
Query: 487 VPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIG 546
V L +GG LVI QTEALV+IDVN G H S EK L NL AA++IAR+LRLRD+
Sbjct: 378 VSLKSGGYLVINQTEALVAIDVNSGRSTKEH--SVEKTALQTNLEAAEEIARQLRLRDLA 435
Query: 547 GIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMI 606
G+IV+DFIDM +D N R+V +++K ++ DR+ ++V +S GL+E++R+R+R SV
Sbjct: 436 GLIVIDFIDMLEDRNVRMVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQRIRISVLEST 495
Query: 607 SEPCTCCQGTGRVEA 621
++PC C GTG + +
Sbjct: 496 TQPCPHCAGTGNIRS 510
>gi|269962048|ref|ZP_06176402.1| ribonuclease E [Vibrio harveyi 1DA3]
gi|269833132|gb|EEZ87237.1| ribonuclease E [Vibrio harveyi 1DA3]
Length = 1029
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y ++Q + PD RV+ Y+ +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAREHIQLVRPDFISRVKKYEGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCSGTGVV 412
>gi|127512522|ref|YP_001093719.1| ribonuclease [Shewanella loihica PV-4]
gi|126637817|gb|ABO23460.1| RNAse E [Shewanella loihica PV-4]
Length = 1128
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 192/336 (57%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G EL+ DL+ L W I E A++
Sbjct: 154 AMSELEVPQGMGLIVRTAGVGKDAAELKWDLKVLQHHWAAIEEAAQNRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D R Y + ++ + PD DR++ Y+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEVLIDHQRIYEQAKQHVALVRPDFVDRIKRYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + E+
Sbjct: 382 GLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTES 417
>gi|417556327|ref|ZP_12207386.1| ribonuclease, Rne/Rng family [Gardnerella vaginalis 315-A]
gi|333602822|gb|EGL14247.1| ribonuclease, Rne/Rng family [Gardnerella vaginalis 315-A]
Length = 1150
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 202/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 645 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 704
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I AK +E + G
Sbjct: 705 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 757
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 758 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 817
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 818 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 876
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 877 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 936
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 937 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 969
Score = 43.1 bits (100), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 544 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 601
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 602 VQNVLPSMEAAFVDIGQARNGVL 624
>gi|319941547|ref|ZP_08015873.1| ribonuclease E [Sutterella wadsworthensis 3_1_45B]
gi|319804917|gb|EFW01759.1| ribonuclease E [Sutterella wadsworthensis 3_1_45B]
Length = 1169
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 210/383 (54%), Gaps = 25/383 (6%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 IHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGEERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME-------------HAKS 395
L+ P G RT G + EELQ DL LL W+ I + H K
Sbjct: 153 AMDRLKLPNGMSTIARTAGIGRTTEELQWDLNYLLKLWEAITDAARPVYEYPTENGHTKL 212
Query: 396 AALAADEGVEG----AVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQD 451
A G +G P L+ + ++DYF ++ +++VD+ Y + ++
Sbjct: 213 LPEAQINGKKGKRANPAPFLIVEESNLVVRAIRDYFQPEIGEILVDTDDIYEQARQFMAH 272
Query: 452 IAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGG 511
+ PD+ DRV+ Y IPLF +F IE++I S+ VPLP+GG++VI+ TEALV+IDVN
Sbjct: 273 VMPDMVDRVKRYRDDIPLFTRFQIEQQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSA 332
Query: 512 HGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKK 571
G+ E+ N AA ++AR++RLRD+GG+IV+DFIDMA+ N+R V + +K
Sbjct: 333 RAT--RGADIEETAFKTNCEAADEVARQMRLRDLGGLIVIDFIDMAEAKNQRAVEQRLKD 390
Query: 572 AVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQ 631
A+ DR+ V+ +++SR GLME++R+R+RPS++ C C G G + E+
Sbjct: 391 AIRYDRARVQTAKISRFGLMELSRQRLRPSLSEGSHITCPRCNGVGVIRDTESCAI---- 446
Query: 632 EISRLLVSKSYNQSTFYFIRHIP 654
++ R+L ++ + T +P
Sbjct: 447 QVLRILQEEAMKEGTGSVRAQVP 469
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 39/69 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+ +++ +KL+++ +E + ++Y+GVVT++ P++ F++ G
Sbjct: 4 MLFNATHPEETRVGIVDGQKLIDIDIETAGREARKSNIYMGVVTRIEPSLEACFIDYGEE 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|451981880|ref|ZP_21930218.1| putative Ribonuclease E [Nitrospina gracilis 3/211]
gi|451760885|emb|CCQ91488.1| putative Ribonuclease E [Nitrospina gracilis 3/211]
Length = 732
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 155/428 (36%), Positives = 236/428 (55%), Gaps = 43/428 (10%)
Query: 221 EVLK-NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQ-GT 276
E+LK NV +I EP EA F DF G+ GF P K D S+ Q G
Sbjct: 38 ELLKGNVYLGVITRVEPAIEACFVDF-------GGKKYGFLPFK----DVLRESYLQTGE 86
Query: 277 KDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ SK T +Q + +G K++VQVVKE KGP+LT + RF +L+ S + G
Sbjct: 87 RKSK------TRIQDVLIRGQKLLVQVVKESRDAKGPSLTNAVTIPGRFLVLMCSKETSG 140
Query: 335 VSRKITG-VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEH 392
+SRKI ER ++K + LQ PE G+ +RT G + ELQKDL+ L+ W+ I E
Sbjct: 141 ISRKIEDESERKKMKEVLSDLQLPEDMGVILRTAGMGRTKLELQKDLQMLMKIWEGIQEK 200
Query: 393 AKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDI 452
+ E P LL++ + V+D+F +++VD+ +Y V +++ +
Sbjct: 201 LQDP--------ESKAPCLLYKVPDMVVRTVRDHFTNDTSEIIVDNAESYKAVKEFMRLV 252
Query: 453 APDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGH 512
P + +R++ + P+F ++ IEE+I N+ KRV LP+GGSLV + EA+V+IDVN G
Sbjct: 253 MPRMRNRIKYSQETKPIFSQYKIEEQIENIYKKRVDLPSGGSLVFDVGEAMVAIDVNSGK 312
Query: 513 GMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKA 572
S E N+ AA++I R+LRLRD+GG+IV+DFIDM NK V +E+KK+
Sbjct: 313 TT--SSSDLEDTATRTNMEAAEEIGRQLRLRDLGGLIVIDFIDMFSKKNKSNVEKEIKKS 370
Query: 573 VERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQE 632
+ D++ + +S +SR GL+E++R+R+ V E C+ CQGTG F++ E
Sbjct: 371 CKSDKARINISRISRFGLLEMSRQRLSSPVKEGNFEQCSLCQGTG--------FTRTESS 422
Query: 633 ISRLLVSK 640
+S ++ K
Sbjct: 423 LSLSVLRK 430
>gi|344999604|ref|YP_004802458.1| ribonuclease, Rne/Rng family [Streptomyces sp. SirexAA-E]
gi|344315230|gb|AEN09918.1| ribonuclease, Rne/Rng family [Streptomyces sp. SirexAA-E]
Length = 1430
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 192/327 (58%), Gaps = 8/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 760 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTI 819
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L W I + AK P
Sbjct: 820 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWDEIQQKAKGT-------TSSNAPT 872
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR+ + + +F
Sbjct: 873 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSQVAPDLSDRLSRWTSEVDVF 932
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 933 ATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMVVVDVNTGK-FTGQGGNLEETVTKNNL 991
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 992 EAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1051
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 1052 VQMTRKRVGQGLLESFSETCVHCNGRG 1078
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 663 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 721
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 722 MEAAFVDIGKGRNAVL 737
>gi|118594942|ref|ZP_01552289.1| probable ribonuclease E [Methylophilales bacterium HTCC2181]
gi|118440720|gb|EAV47347.1| probable ribonuclease E [Methylophilales bacterium HTCC2181]
Length = 759
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 206/337 (61%), Gaps = 14/337 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLK- 348
+ +G ++IVQV K+ G KG LT+Y L R+ +L+ + D G+SR+I G ER+ K
Sbjct: 90 INEGQEIIVQVSKDERGNKGAALTSYLSLAGRYIVLMPNNNDGGGISRRIEGEERSAFKE 149
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
V+++ +G + RT G S+E++Q DL+ L W+ I A A EG
Sbjct: 150 VLSQLTVTKGTSVIGRTAGIGASVEQIQWDLDYLNQLWEAIENAAN-----AQEG----- 199
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DYF+ ++++++D + + ++ + PD +RV+LY++ I
Sbjct: 200 PFLIYQESNLVIRAIRDYFSADIEEVLIDKQEIFDQAHQFMSHVMPDYAERVKLYEENIS 259
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF KFNIE +I + + V LP+GGS+VI+ TEALVS+DVN G E +
Sbjct: 260 LFSKFNIENQIESAFLREVQLPSGGSIVIDHTEALVSVDVNSSRST--KGRDIENTAFNT 317
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++A+++RLRDIGG++VVDFIDM N+R V ++ A++ D++ +++ ++SR
Sbjct: 318 NLEAASELAKQMRLRDIGGLVVVDFIDMEHQKNQREVENRMRDALKNDKARIQLGKISRF 377
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GLME++R+R+RPS+ I+ C C GTGRV ++++
Sbjct: 378 GLMELSRQRLRPSLGDSINGVCPKCSGTGRVRDIQST 414
Score = 39.7 bits (91), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A++ D KL +L E + ++Y VVT++ P++ AFVN G
Sbjct: 1 MLFNATQSEELRVAIVSDSKLEDLDFERGNREQRKSNIYKAVVTRVEPSLEAAFVNYGVD 60
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 61 RHGFLPFKE 69
>gi|147674453|ref|YP_001217556.1| ribonuclease E [Vibrio cholerae O395]
gi|146316336|gb|ABQ20875.1| ribonuclease E [Vibrio cholerae O395]
Length = 688
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 211/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LTA+ L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTAFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|90021266|ref|YP_527093.1| RNAse E [Saccharophagus degradans 2-40]
gi|89950866|gb|ABD80881.1| RNAse E [Saccharophagus degradans 2-40]
Length = 968
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 146/415 (35%), Positives = 226/415 (54%), Gaps = 38/415 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ L+ + I G EP EA F D+ E +GF P K E+ +
Sbjct: 26 DLDIENRLREQKKANIYKGRITRVEPSLEAAFVDY-------GSERHGFLPLK-EISREY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWIL 326
P K G + +Q V++G +VIVQV KE G KG LT + L R+ +L
Sbjct: 78 FAKQP------KDIDG-RIRIQDVVKEGMEVIVQVDKEERGNKGAALTTFISLAGRYLVL 130
Query: 327 ITSCDRIG-VSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLS 384
+ + R G +SR+I G +RT LK +++ P G G+ +RT G EELQ D+ L
Sbjct: 131 MPNNPRAGGISRRIDGDDRTELKDALSQIDVPAGMGIIVRTAGVGRRAEELQWDMNYLAQ 190
Query: 385 TWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHE 444
W +I A+ E P L + + ++DY + +++VD+ Y+
Sbjct: 191 LWASIKTAAE----------EKTAPEFLFQESNVIIRAIRDYLRPDIGEVIVDNQDAYNL 240
Query: 445 VTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALV 504
T++++ + P+ +V+LY++ +PLF++F IE +I + V LP+GGS+VI+ TEAL+
Sbjct: 241 ATAFVEQVMPNYRSKVKLYEEPLPLFNRFQIESQIETAFEREVKLPSGGSIVIDVTEALI 300
Query: 505 SIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRL 564
SID+N G E+ L NL AA +IAR+LRLRD+GG++V+DFIDM N+R
Sbjct: 301 SIDINSSRAT--KGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQRE 358
Query: 565 VYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
V ++ A+E DR+ V+V +SR GL+E++R+R+RPS+ S+ C C G G +
Sbjct: 359 VENRMRDALEMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTI 413
>gi|319898906|ref|YP_004158999.1| ribonuclease E [Bartonella clarridgeiae 73]
gi|319402870|emb|CBI76421.1| ribonuclease E [Bartonella clarridgeiae 73]
Length = 804
Score = 236 bits (602), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 177/590 (30%), Positives = 286/590 (48%), Gaps = 55/590 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ D K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHDNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R E EE AV ++ E +
Sbjct: 61 YGGNRHGFLTFAEIHPDYYQIPVADRLALLE---------EEKAVINESYGDDPIEETIQ 111
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
S + + N D ++ +SE + I DD E + DF D + G
Sbjct: 112 NKKSLRKTKKDKSNSFMATDIENDIISETI------IADDAE---EIPDFSNDDIEMVGA 162
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
+ E+P T K K +++ +++QV+KE G KG L
Sbjct: 163 EDAL----EELP----------TYRRKQGCQYKIQEVIKRRQILLIQVIKEERGNKGAAL 208
Query: 314 TAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT A
Sbjct: 209 TTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRTAGANR 268
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L+ W I AL ++ P L+H ++D +++
Sbjct: 269 TKAEIKRDYEYLMRLWDTIR------ALT----LKSTAPCLIHEESNLIKRSIRDLYSKD 318
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F +IE +++ ML +V L
Sbjct: 319 INEILVAGDQGYREAKDFMRMLMPSHAKVVQPYRNPIPIFAHNDIETQLDKMLHPQVSLK 378
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+IDVN G H S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 379 SGGYLVINQTEALVAIDVNSGRSTKEH--SVEKTALQTNLEAAEEIARQLRLRDLAGLIV 436
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDM + N +LV +++K ++ DR+ ++V +S GLME++R+R+R SV ++PC
Sbjct: 437 IDFIDMLETRNIKLVEKKLKDCLKNDRARIQVGHISHFGLMEMSRQRIRVSVLESTTQPC 496
Query: 611 TCCQGTGRVEALETSFSKIEQEISRLLVSKS-YN-------QSTFYFIRH 652
C GTG + + + + + I L+ S YN + Y + H
Sbjct: 497 PHCAGTGNIRSESSIALHVMRSIEEYLLRNSQYNIIVRTSVATALYVLNH 546
>gi|410611271|ref|ZP_11322370.1| ribonuclease E [Glaciecola psychrophila 170]
gi|410169122|dbj|GAC36259.1| ribonuclease E [Glaciecola psychrophila 170]
Length = 959
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 145/404 (35%), Positives = 220/404 (54%), Gaps = 30/404 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F D+ D H GF P K + + T PQG + +
Sbjct: 37 NIYKGTITRVEPSLEAAFVDY-GADRH------GFLPLK----EIARTYFPQGYR-FEGR 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
P K +++G +VI+Q+ KE G KG LT + L + +L+ + R G VSR+I G
Sbjct: 85 PNIKEV--IKEGQEVIIQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGVSRRIEG 142
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ERT LK L P+G GL +RT G + EEL DL+ L+S W I + A S +
Sbjct: 143 DERTELKAALSGLDLPDGMGLIVRTAGVGKTTEELAYDLDYLVSGWGRIKDMADSRS--- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
P L+H+ + ++DY + ++++D+ + +++ + PD +RV
Sbjct: 200 -------APFLIHQESDVVVRAIRDYLRRDIGEILIDNAVVHERALKHVEQMRPDYANRV 252
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+LY +PLF + IE +I + + V LP+GGS+VI+ TEAL+SID+N GS
Sbjct: 253 KLYTGDVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALISIDINSARAT--KGSD 310
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ + NL AA +IAR+LRLRD GG++V+DFIDM ++R V +K AV DR+ V
Sbjct: 311 IEETAFNTNLEAADEIARQLRLRDAGGLVVIDFIDMTPVRHQREVENRMKDAVRGDRARV 370
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
++ +SR GL+E++R+R+RPS+ + C C G G V E+
Sbjct: 371 QLGRISRFGLLEMSRQRLRPSLGDSANNVCPRCSGHGTVRGTES 414
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQLEELRVALVDGQKLYDLDIESPGHEQKKSNIYKGTITRVEPSLEAAFVDYGAD 60
Query: 138 RPSLMDIKHYREPFIFP 154
R + +K + FP
Sbjct: 61 RHGFLPLKEIARTY-FP 76
>gi|365862139|ref|ZP_09401896.1| ribonuclease E [Streptomyces sp. W007]
gi|364008621|gb|EHM29604.1| ribonuclease E [Streptomyces sp. W007]
Length = 1142
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 202/338 (59%), Gaps = 10/338 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 461 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 520
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 521 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEDIQKKAK--------GTSGSNAP 572
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 573 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAPDLTERLSRWTSEVDV 632
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + N
Sbjct: 633 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNN 691
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 692 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 751
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
L+++TRKRV + SE C C G G + +E S
Sbjct: 752 LVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 789
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 364 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 422
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 423 MEAAFVDIGKGRNAVL 438
>gi|415705761|ref|ZP_11461032.1| ribonuclease G [Gardnerella vaginalis 75712]
gi|388052483|gb|EIK75507.1| ribonuclease G [Gardnerella vaginalis 75712]
Length = 1135
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 202/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 642 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 701
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I AK +E + G
Sbjct: 702 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 754
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 755 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 814
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 815 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 873
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 874 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 933
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 934 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 966
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 541 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 598
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 599 VQNVLPSMEAAFVDIGQARNGVL 621
>gi|312795516|ref|YP_004028438.1| ribonuclease E [Burkholderia rhizoxinica HKI 454]
gi|312167291|emb|CBW74294.1| Ribonuclease E (EC 3.1.4.-) [Burkholderia rhizoxinica HKI 454]
Length = 1100
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 204/341 (59%), Gaps = 14/341 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 93 LHEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G + RT G S EELQ DL LL W+ I AA G G
Sbjct: 153 TMAQLELPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AAANGTRG-- 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+P + + ++++ + PD +V+ Y +P
Sbjct: 203 PLLIYLESSLVIRAIRDYFQPDIGEILIDTPDIHDQARAFMEVVMPDNLGKVKRYHDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAVVIDHTEALVAIDVNSARAT--KGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 321 NLEAADEVARQLRLRDLGGLIVIDFIDMEASKSQREVEQRLKDALKHDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 381 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 421
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|415702460|ref|ZP_11458631.1| ribonuclease G [Gardnerella vaginalis 284V]
gi|388053421|gb|EIK76408.1| ribonuclease G [Gardnerella vaginalis 284V]
Length = 1141
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 125/333 (37%), Positives = 200/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 645 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 704
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + ++KDLE L+ W+ I +E + G
Sbjct: 705 AIVSKIAPKDMGIIIRTAADGASEDAIEKDLESLVKQWERI-------ETKREEFLHGKR 757
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 758 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 817
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 818 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 876
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 877 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 936
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 937 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 969
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 544 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 601
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 602 VQNVLPSMEAAFVDIGQARNGVL 624
>gi|451981168|ref|ZP_21929542.1| Ribonuclease G [Nitrospina gracilis 3/211]
gi|451761605|emb|CCQ90795.1| Ribonuclease G [Nitrospina gracilis 3/211]
Length = 510
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 145/428 (33%), Positives = 239/428 (55%), Gaps = 29/428 (6%)
Query: 219 VSEVLKNVNGSIIDDGEPEADF---EDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQG 275
V+++L + + +D G +A F D GD DGE P++ ++ +D H +G
Sbjct: 46 VTKILPGMQVAFVDIGLEKAGFLYVGDIDAGDLLDDGEK----PNQVDINEDKD-GHEEG 100
Query: 276 -----TKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSC 330
T+ H P + +++G +++VQV K LGTKG +T+Y L R + + +
Sbjct: 101 ETVSPTRSMDHIPIQDL---LREGQEIMVQVAKNPLGTKGARITSYITLAGRHIVYMPTV 157
Query: 331 DRIGVSRKITGV-ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNI 389
D++ VSR+I E+ RLK I + G G IRT G + + D++ L N+
Sbjct: 158 DQVCVSRRIENEDEKERLKAIISEIGRPGEGYIIRTAGQGRQKVDFETDIQFLHKLGDNL 217
Query: 390 MEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYL 449
++ P LL+ + ++D FNE V+++V+DS Y + +
Sbjct: 218 KVRVETEP----------APSLLYEDLNLIFRSIRDLFNEDVQRLVIDSKSDYEKCIEFC 267
Query: 450 QDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVN 509
+ P+L D++ELY + +P+FD F IE EIN L +++ L +GG + I+QTEALV+IDVN
Sbjct: 268 SNYLPELVDKIELYKESVPIFDYFGIEIEINRALGRKIWLKSGGFITIDQTEALVAIDVN 327
Query: 510 GGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEV 569
G GH S E+ IL NL A K+I +LRLR+IGGII+VDFIDM+ + +K +V+ +
Sbjct: 328 TGK-FVGH-SDPEETILKTNLEAVKEIVYQLRLRNIGGIIIVDFIDMSREESKEIVWSAL 385
Query: 570 KKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ + DRS + ++S GL+E+TRKRVR S++ + +PC C+G G +++ T +I
Sbjct: 386 QQELRFDRSRTNILKISELGLVEMTRKRVRGSLSQTLCDPCPYCEGKGHIKSPATVCYEI 445
Query: 630 EQEISRLL 637
+ + R++
Sbjct: 446 IRALQRMV 453
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+++ I+INS+ + R+A++E+ +LVE+ +E +VY GVVTK++P M AFV+
Sbjct: 1 MASEIIINSNQREI-RVALVENHQLVEIFVEHKAKRGIVGNVYKGVVTKILPGMQVAFVD 59
Query: 134 IGNSRPSLM 142
IG + +
Sbjct: 60 IGLEKAGFL 68
>gi|322513325|ref|ZP_08066445.1| ribonuclease E [Actinobacillus ureae ATCC 25976]
gi|322120879|gb|EFX92733.1| ribonuclease E [Actinobacillus ureae ATCC 25976]
Length = 992
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 149/430 (34%), Positives = 231/430 (53%), Gaps = 42/430 (9%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKD 278
N+ I EP EA F D+ E +GF P S+ P D + KD
Sbjct: 40 NIYKGKITRVEPSLEAAFVDY-------GAERHGFLPLKEISREYFPADYVFNGRPNIKD 92
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSR 337
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR
Sbjct: 93 I-----------IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141
Query: 338 KITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
+I G ER LK L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 142 RIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESR 201
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
P L+H+ + ++DY + ++++D+ + + + ++++ + PD
Sbjct: 202 P----------APFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDF 251
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
+RV LY+ +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N
Sbjct: 252 INRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST-- 309
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
G E+ L+ NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +D
Sbjct: 310 RGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQD 369
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
R+ ++ +SR GL+E++R+R+ PS++ S C CQGTG+V E+ I I RL
Sbjct: 370 RARIQFGRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRL 425
Query: 637 LVSKSYNQST 646
L ++ ++T
Sbjct: 426 LEEEAIKENT 435
>gi|423224536|ref|ZP_17211004.1| rne/Rng family ribonuclease [Bacteroides cellulosilyticus
CL02T12C19]
gi|392635374|gb|EIY29274.1| rne/Rng family ribonuclease [Bacteroides cellulosilyticus
CL02T12C19]
Length = 524
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/352 (36%), Positives = 212/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAVTKIQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ +HE+ Y+ IAPD V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVFHEIKDYVTLIAPDRAGIVKLYRGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEANALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNLSFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|294664686|ref|ZP_06730019.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
gi|292605539|gb|EFF48857.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
10535]
Length = 711
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 232/429 (54%), Gaps = 39/429 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIRE----LLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY V +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++ + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN H GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSHAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGR---VEALE 623
++ A++ DR+ V++ +SR GLME++R+R+RPS+ C C G GR VE+L
Sbjct: 359 NRLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLS 418
Query: 624 TSFSKIEQE 632
S ++ +E
Sbjct: 419 LSIIRVAEE 427
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|49474199|ref|YP_032241.1| ribonuclease E [Bartonella quintana str. Toulouse]
gi|49239703|emb|CAF26079.1| Ribonuclease E [Bartonella quintana str. Toulouse]
Length = 875
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 168/555 (30%), Positives = 274/555 (49%), Gaps = 52/555 (9%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A LEE E +
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL----------ALLEEE-------------EKAS 97
Query: 194 EADSQDDLVQFEHNDDEEHD---GDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGD-HH 249
++ D + E N +++ D + +V +II D D E+ + D H
Sbjct: 98 GGENHSDALIEETNKNKKRSRKTKKDQKNKIMAADVENAIISDAITTDDAEEAFDSDISH 157
Query: 250 LDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTK 309
E G + E+P T + K +++ ++VQ++KE G K
Sbjct: 158 DYIEMVGTEDVREELP----------TYQRRQGRQYKIQEVIKRRQILLVQIIKEERGNK 207
Query: 310 GPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTV 366
G LT Y L R+ +L+ + R G +SRKIT ++ R RLK I K L P+G G+ +RT
Sbjct: 208 GAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKEIVKELAVPKGMGVILRTA 267
Query: 367 AAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDY 426
A + E+++D E L W + ++ L + P L+H ++D
Sbjct: 268 GANRTKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLVHEESNLIKRSIRDL 317
Query: 427 FNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKR 486
+N+ + +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +
Sbjct: 318 YNKNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDLIPIFVRNNIEIQLDKMLHPQ 377
Query: 487 VPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIG 546
V L +GG LVI QTEALV+IDVN G H S EK L NL AA++IAR+LRLRD+
Sbjct: 378 VSLKSGGYLVINQTEALVAIDVNSGRSTKEH--SVEKTALQTNLEAAEEIARQLRLRDLA 435
Query: 547 GIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMI 606
G+IV+DFIDM +D N R+V +++K ++ DR+ ++V +S GL+E++R+R+R SV
Sbjct: 436 GLIVIDFIDMLEDRNVRMVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQRIRISVLEST 495
Query: 607 SEPCTCCQGTGRVEA 621
++PC C GTG + +
Sbjct: 496 TQPCPHCAGTGNIRS 510
>gi|294141326|ref|YP_003557304.1| ribonuclease E [Shewanella violacea DSS12]
gi|293327795|dbj|BAJ02526.1| ribonuclease E [Shewanella violacea DSS12]
Length = 1139
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/336 (38%), Positives = 190/336 (56%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 IKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G GL +RT G EL DL+ L W I E + V
Sbjct: 154 ALSELAVPNGMGLIVRTAGVGKDSAELAWDLKVLEHHWTAIKEAS----------VGRPA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + E ++ + PD DR++ YD +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEEAKQHVALVRPDFADRIKHYDAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF F IE +I + + V LP+GGS+VI+ TEAL SID+N GS E+ L+
Sbjct: 264 LFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGSDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHLDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + E+
Sbjct: 382 GLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTES 417
>gi|163856052|ref|YP_001630350.1| ribonuclease E [Bordetella petrii DSM 12804]
gi|163259780|emb|CAP42081.1| ribonuclease E [Bordetella petrii]
Length = 995
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/366 (35%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P+G + RT G ++EELQ DL L+ W I A+ + A
Sbjct: 153 TMEQLEVPQGMSIIARTAGIGRNVEELQWDLSYLMQLWTAIDSAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN GS E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGSDIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAADEVARQLRLRDLGGLIVIDFIDMEDGKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSAL----HVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|158317018|ref|YP_001509526.1| ribonuclease [Frankia sp. EAN1pec]
gi|158112423|gb|ABW14620.1| ribonuclease, Rne/Rng family [Frankia sp. EAN1pec]
Length = 1427
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/341 (38%), Positives = 201/341 (58%), Gaps = 11/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 866 LKSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLVYVPDGQNAGISRKLPDTERARLKSI 925
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EL++D+E L++ W++I A+ A+ P
Sbjct: 926 LKKITPENGGVIVRTAAEGASEAELERDIERLVAQWEDIQRKAQKAS----------APS 975
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +++D FNE ++VV V Y+ +APDL DRV Y +F
Sbjct: 976 LLYGEPDLVVRVIRDIFNEDFTELVVQGSHEAATVEGYVDTVAPDLRDRVRRYVGTGDVF 1035
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ ++E++ L ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL
Sbjct: 1036 AEHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FTGKGGNLEETVTKNNL 1094
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1095 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 1154
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQ 631
+++TRKRV + SEPC C G G + L+++ S+ Q
Sbjct: 1155 VQMTRKRVGQGLLEAYSEPCAHCNGRGVLVHLDSAHSRDAQ 1195
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED LVE + S +VYLG V ++ +M AFV+IG R +++
Sbjct: 790 QIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDIGKGRNAVL 843
>gi|406573818|ref|ZP_11049560.1| ribonuclease, Rne/Rng family protein [Janibacter hoylei PVAS-1]
gi|404556768|gb|EKA62228.1| ribonuclease, Rne/Rng family protein [Janibacter hoylei PVAS-1]
Length = 904
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 194/324 (59%), Gaps = 3/324 (0%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I K
Sbjct: 362 GDSVLVQVTKDPVGHKGARLTSQISLPGRYVVYVPEGSMTGISRKLPDTERSRLKGILKQ 421
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ +RT A G S EL D+E L W I +K+ A +G G P+LLH
Sbjct: 422 VVPDSAGVIVRTAAEGASEAELTADVERLTKAWDKI--SSKAEAKKGKKGSAGGAPVLLH 479
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
T+ +++D FNE KMVV + E+ Y+ D+APDL DR+E Y +F
Sbjct: 480 AEPDMTVRVIRDIFNEDFAKMVVSGDDAWREIKGYVDDVAPDLSDRLEKYTGEGDVFAAH 539
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I+E I + ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 540 RIDEAIAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 598
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 599 EEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVVRRLLECLGRDRTKHQVAEVTSLGLVQM 658
Query: 594 TRKRVRPSVTFMISEPCTCCQGTG 617
TRKRV + + S+ C CQG G
Sbjct: 659 TRKRVGAGLIEVFSQECEHCQGRG 682
>gi|114778281|ref|ZP_01453140.1| Ribonuclease E and G [Mariprofundus ferrooxydans PV-1]
gi|114551383|gb|EAU53939.1| Ribonuclease E and G [Mariprofundus ferrooxydans PV-1]
Length = 506
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 148/446 (33%), Positives = 242/446 (54%), Gaps = 39/446 (8%)
Query: 219 VSEVLKNVNGSIIDDGEPEADF----------EDFLEGDHHLD-GESNGFFPSKSEVPDD 267
V VL + + +D G +A F + LE +D G+ N EV DD
Sbjct: 44 VQRVLPGIQAAFVDIGMDKAGFLYAGDIATAKQPALELSEEIDHGDDN-------EVGDD 96
Query: 268 SHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI 327
S S+ + ++ P ++ G +++VQV +E + +KGP LT+ L R+ + +
Sbjct: 97 SSASN----QPRRNAPPIANL--IRDGQELMVQVSREPIASKGPRLTSQVGLAGRYLVYL 150
Query: 328 TSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
G++R++ VER RL IA + PE GL IRTVA G ++Q+DL+ LL W
Sbjct: 151 PHLQHTGIARRLEDPVERERLLAIAHAIAPEKGGLIIRTVAEGKQEADIQQDLDYLLRLW 210
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+I + KSA L L+H+ + L +++DY + +V+K+ +DS Y +
Sbjct: 211 GDIEKRTKSAGLGT----------LIHKELNLYLRVMRDYVDAEVEKIHIDSKEAYESMK 260
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+ + P++ R+ Y P+FD + +EE I + L +RVPL +GG +VI+QTEAL++I
Sbjct: 261 KFARRFMPEVSKRLYYYPGERPIFDVYGVEEAIESALKRRVPLKSGGHIVIDQTEALIAI 320
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G F + E+ NL A +I +LRLR++GGIIVVDFIDM +D NK+ +
Sbjct: 321 DVNSGS--FVGSRNMEETGFKTNLEAVHEIVHQLRLRNLGGIIVVDFIDMQEDENKQRLM 378
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSF 626
E + +A++RD++ + +LS GL+E+TRKR R S+ M+ + C C G G+ ++ T
Sbjct: 379 EVLDEALKRDKTKTHIVQLSELGLVEMTRKRTRDSLGRMLMKECGRCGGIGQAKSPTTIC 438
Query: 627 SKIEQEISRLLVSKSYNQSTFYFIRH 652
++ +E+ + +++Y I H
Sbjct: 439 YQLFREV--VAEARAYPCEKLMVIAH 462
>gi|182438733|ref|YP_001826452.1| hypothetical protein SGR_4940 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467249|dbj|BAG21769.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350]
Length = 1415
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 128/338 (37%), Positives = 202/338 (59%), Gaps = 10/338 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER+RLK I
Sbjct: 739 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERSRLKTI 798
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA-VP 409
K + PE G+ +RT A G S +EL++D+E L W++I + AK G G+ P
Sbjct: 799 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQQQWEDIRKKAK--------GTSGSNAP 850
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LL+ T+ +V+D FNE K++V + + Y+ +APDL +R+ + + +
Sbjct: 851 TLLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWETIHGYVSHVAPDLTERLSRWTSEVDV 910
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F + I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + N
Sbjct: 911 FATYRIDEQLMKALDRKVYLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNN 969
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L AA++I R+LRLRD+GGI+VVDFIDM +SN+ LV + + + RDR+ +V+E++ G
Sbjct: 970 LEAAEEIVRQLRLRDLGGIVVVDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLG 1029
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFS 627
L+++TRKRV + SE C C G G + +E S
Sbjct: 1030 LVQMTRKRVGQGLLESFSETCVHCNGRGVIVHMEQPTS 1067
Score = 43.5 bits (101), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 642 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 700
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 701 MEAAFVDIGKGRNAVL 716
>gi|254481998|ref|ZP_05095240.1| ribonuclease, Rne/Rng family protein [marine gamma proteobacterium
HTCC2148]
gi|214037688|gb|EEB78353.1| ribonuclease, Rne/Rng family protein [marine gamma proteobacterium
HTCC2148]
Length = 920
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/331 (37%), Positives = 193/331 (58%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++GT++IVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R+ L+
Sbjct: 94 VKEGTEIIVQVDKEERGNKGAALTTFISLAGRYMVLMPNNPRAGGISRRIDGDDRSELRE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P G G+ IRT G S EELQ DL LL W+ I E + A
Sbjct: 154 ALSALEIPNGMGVIIRTAGVGRSSEELQWDLNYLLQLWEKITEANNESKPA--------- 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
LL + + ++DY + + ++++DSP Y + ++ + P ++ +Y+ IP
Sbjct: 205 -TLLFQESNVIIRAIRDYLRDDIDQVLIDSPEAYQQADDFISQVMPQFKSKLRVYEDSIP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F++F IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L
Sbjct: 264 MFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGKDIEETALKT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V ++ A+ DR+ V+V +SR
Sbjct: 322 NLEAADEVARQLRLRDMGGLIVIDFIDMLAAKSQRQVENRMRDALNIDRARVQVGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+RPS+ ++ C C G G +
Sbjct: 382 GLLEMSRQRLRPSLGETSAKVCPRCTGQGTI 412
>gi|387901762|ref|YP_006332101.1| ribonuclease E [Burkholderia sp. KJ006]
gi|387576654|gb|AFJ85370.1| Ribonuclease E [Burkholderia sp. KJ006]
Length = 1063
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNSGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|170726385|ref|YP_001760411.1| ribonuclease [Shewanella woodyi ATCC 51908]
gi|169811732|gb|ACA86316.1| ribonuclease, Rne/Rng family [Shewanella woodyi ATCC 51908]
Length = 1142
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 193/336 (57%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +V++Q+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 94 VKEGQEVVIQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKA 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ P+G GL +RT G EL+ DL+ L+ W I E A S
Sbjct: 154 ALSELEVPQGMGLIVRTAGVGKDSAELKWDLKVLVHHWAAIKEAADS----------RPA 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY V ++++D PR + + ++ + PD DR++ Y+ +P
Sbjct: 204 PFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDAKQHVSLVRPDFVDRIKQYEAEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+
Sbjct: 264 LFTHYQIETQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR+ V++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRMRDAVHHDRARVQLGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GLME++R+R+RPS+ + C C G G + E+
Sbjct: 382 GLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTES 417
>gi|282860075|ref|ZP_06269156.1| S1 RNA binding domain protein [Prevotella bivia JCVIHMP010]
gi|424899487|ref|ZP_18323029.1| ribonuclease, Rne/Rng family [Prevotella bivia DSM 20514]
gi|282587163|gb|EFB92387.1| S1 RNA binding domain protein [Prevotella bivia JCVIHMP010]
gi|388591687|gb|EIM31926.1| ribonuclease, Rne/Rng family [Prevotella bivia DSM 20514]
Length = 524
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/437 (32%), Positives = 237/437 (54%), Gaps = 20/437 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N ++ G F +L+ L + N + +V D +P
Sbjct: 46 VKKLMPGLNACFVNVGYERDAFLHYLD----LGSQFNSYAKYLKQVQSDRKRLYPIQKAA 101
Query: 279 SKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
++ + ++ VQ G +V+VQVVKE + TKGP LT R+ +L+ ++I VS
Sbjct: 102 AQPDIDKDGTIKDAVQVGQEVLVQVVKEPISTKGPRLTGEISFAGRYIVLLPFGNKISVS 161
Query: 337 RKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
KI +G ER RLK + +++ P+ FG+ +RTVA G + EL +++ LL W +++ +
Sbjct: 162 SKIKSGEERARLKQLIRSITPKNFGVIVRTVAEGKRVAELDAEMQILLKRWNDVITKVQK 221
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
P L+ G+ +++++D FN + + V+ V Y+ IAP+
Sbjct: 222 TQ---------DRPQLVFEETGRAVAMIRDLFNPTYENIYVNDEEICTAVRHYITMIAPE 272
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
V+ Y ++P+FD F+I +I + K + +G L+IE TEA+ +DVN G+
Sbjct: 273 KASIVKQYTGKLPIFDNFDITRQIKSSFGKTINYGHGCYLIIEHTEAMHVVDVNSGNRAK 332
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
G +E+ LD NL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +++
Sbjct: 333 EKG--QEQNALDTNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMSKNMQQ 390
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG+V A ++E +I R
Sbjct: 391 DRARHNILPLSKFGLMQITRQRVRPAMDVDVDETCPTCFGTGKVRASILFTDQLEHKIDR 450
Query: 636 LLVSKSYNQSTFYFIRH 652
L+ + FY H
Sbjct: 451 LV--NKFGVKKFYLHVH 465
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+KLVE EP ++N ++Y+ V KL+P + FVN+G R + + HY
Sbjct: 16 IALLEDKKLVEYQREPREANFSVGNIYVAKVKKLMPGLNACFVNVGYERDAFL---HY 70
>gi|296136843|ref|YP_003644085.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12]
gi|295796965|gb|ADG31755.1| ribonuclease, Rne/Rng family [Thiomonas intermedia K12]
Length = 998
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 145/409 (35%), Positives = 227/409 (55%), Gaps = 31/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +++ EP EA F D+ E H GF P K + S +G S+
Sbjct: 40 NIYKAVVTRVEPSLEACFVDYGEERH-------GFLPFK----EISRQYFKEGVSPSQA- 87
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ + +G +++VQV KE G KG LT L R+ +L+ + R G VSR+I G
Sbjct: 88 ---RIQDVITEGQQLLVQVEKEERGNKGAALTTIISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG L RT G S EELQ DL LL W SA A
Sbjct: 145 EDRQELRETMDQLQHPEGMSLIARTAGIGRSAEELQWDLNYLLKLW--------SAVRDA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
E +GA L+++ + ++DYF + ++++D+ + + ++ + PD +RV
Sbjct: 197 SETQKGA--FLIYQESSLVIRAIRDYFTSDIGEILIDTEDVFEQARQFMLHVMPDTVERV 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE++I S+ V LP GG++VI+ TEALV++DVN G++
Sbjct: 255 KRYRDDLPLFSRFQIEQQIETAYSRTVNLPAGGAIVIDHTEALVAVDVNSARST--RGNA 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E L NL AA ++AR++RLRD+GG+IVVDFIDM + N+R V + ++ A+ +DR+ V
Sbjct: 313 IEDTALRTNLEAADEVARQMRLRDLGGLIVVDFIDMEEPRNQRAVEDRLRDAMRQDRARV 372
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
+VS++S+ GL+E++R+R+RP+++ C C GTG + E+S +I
Sbjct: 373 QVSKISKFGLLELSRQRLRPALSEGAYVTCPRCNGTGHIRDTESSALQI 421
>gi|189349900|ref|YP_001945528.1| ribonuclease [Burkholderia multivorans ATCC 17616]
gi|189333922|dbj|BAG42992.1| ribonuclease [Burkholderia multivorans ATCC 17616]
Length = 1054
Score = 236 bits (601), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 224/409 (54%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 197 SQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|407693670|ref|YP_006818459.1| ribonuclease E [Actinobacillus suis H91-0380]
gi|407389727|gb|AFU20220.1| ribonuclease E [Actinobacillus suis H91-0380]
Length = 1018
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 209/358 (58%), Gaps = 18/358 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 91 IKEGQEVIVQVSKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 150
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W+ I + A+S
Sbjct: 151 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKKAAESRP----------A 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +RV LY+ +P
Sbjct: 201 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRVRLYEGEVP 260
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 261 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 318
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ +SR
Sbjct: 319 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFGRISRF 378
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQST 646
GL+E++R+R+ PS++ S C CQGTG+V E+ I I RLL ++ ++T
Sbjct: 379 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNES----IALSILRLLEEEAIKENT 432
>gi|225010185|ref|ZP_03700657.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-3C]
gi|225005664|gb|EEG43614.1| ribonuclease, Rne/Rng family [Flavobacteria bacterium MS024-3C]
Length = 516
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 142/384 (36%), Positives = 219/384 (57%), Gaps = 22/384 (5%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
++ ++VQ+VKE + TKGP +++ + R+ +++ DR+ VS+KI + E+ RLK
Sbjct: 117 IKANQSILVQIVKEPISTKGPRISSELSIAGRYLVMVPFSDRVSVSQKIESKEEKDRLKR 176
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ K+++P+GFG+ IRTVA G + EL +DL+ LL+ W + + A + VE
Sbjct: 177 LVKSIKPKGFGVIIRTVAEGKKVAELDRDLQNLLNKWTVMCKKLHKAPHPSKVLVE---- 232
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L+RA SI++D FN+ + VD Y +V Y+Q+IAP+ V+LY+ P+
Sbjct: 233 --LNRAS----SILRDVFNDSFSGIHVDDETLYTQVKDYVQEIAPEKESIVKLYEATEPI 286
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+KF IE +I K + G LVIE TEAL IDVN G+ ++E LDVN
Sbjct: 287 FEKFGIERQIKTSFGKTATMSKGAYLVIEHTEALHVIDVNSGNRS-NKAKNQEDTALDVN 345
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L+AA +IAR+LRLRD+GGIIVVDFIDMA +++ +++ + + ++ DR+ K+ S+ G
Sbjct: 346 LSAATEIARQLRLRDMGGIIVVDFIDMAKGDHRKKLFDHLSEEMKEDRAKHKILPPSKFG 405
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQS---- 645
L++ITR+RVRP + +EP G VEA KI ++ +L V S +
Sbjct: 406 LIQITRQRVRPEMNIKTTEPLPTITGK-EVEAPIVLLDKITADLQKLFVGPSKDHKVTLN 464
Query: 646 -----TFYFIRHIPKRRKHLKLEY 664
Y + IP R+ LEY
Sbjct: 465 VHPFIAAYLSQGIPSIRQKWFLEY 488
>gi|345870202|ref|ZP_08822156.1| ribonuclease, Rne/Rng family [Thiorhodococcus drewsii AZ1]
gi|343922144|gb|EGV32849.1| ribonuclease, Rne/Rng family [Thiorhodococcus drewsii AZ1]
Length = 980
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 245/455 (53%), Gaps = 47/455 (10%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F D+ E +GF P K P K
Sbjct: 40 NIYKGIITRVEPSLEAAFVDY-------GAERHGFLPLKEIA---RAYFEPDSVK----- 84
Query: 283 PGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKI 339
PG +T ++ V++G +V++Q+ KE G KG LT + L R+ +L+ + R G VSR+I
Sbjct: 85 PGSRTNIKEAVREGREVVIQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRI 144
Query: 340 TGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAAL 398
G +R+ L+ +++ PE GL +RT G ++EELQ DL+ LL WK I+ ++S
Sbjct: 145 EGQDRSELRDAMSQLAIPEDMGLIVRTAGVGKNVEELQWDLDYLLQLWKAIVASSESRK- 203
Query: 399 AADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCD 458
P L+++ + ++DY + ++V+D Y ++++ + P
Sbjct: 204 ---------APFLIYQESDVIIRSIRDYLRVDIGEIVIDDRAVYERAENFIKQVMPQNLK 254
Query: 459 RVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHG 518
++ LY +PLF ++ IE +I + + V LP+GGS+VI+ TEAL SID+N G
Sbjct: 255 KLRLYQDEVPLFTRYQIETQIESAFQREVRLPSGGSVVIDHTEALTSIDINSARAT--KG 312
Query: 519 SSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRS 578
+ E+ + NL AA +IAR+LRLRD+GG+ V+DFIDM ++R V +++A+++DR+
Sbjct: 313 ADIEETAFNTNLEAADEIARQLRLRDLGGLFVIDFIDMTPPKHQREVENRLREALKQDRA 372
Query: 579 MVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLV 638
V+V+ +SR GL+E++R+R+RPS+ + C C+G G + +E+ + I R+L
Sbjct: 373 RVQVARISRFGLLEMSRQRLRPSLGESSQQVCPRCKGRGAIRGVES----LALSILRILE 428
Query: 639 SKSYNQSTFYFIRHIP----------KRRKHLKLE 663
++ +T + +P KRR L++E
Sbjct: 429 EEAMKDNTQRIMAQLPVSVATFLLNEKRRAILEME 463
>gi|357406443|ref|YP_004918367.1| ribonuclease E [Methylomicrobium alcaliphilum 20Z]
gi|351719108|emb|CCE24782.1| Ribonuclease E (RNase E) [Methylomicrobium alcaliphilum 20Z]
Length = 731
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 143/448 (31%), Positives = 235/448 (52%), Gaps = 36/448 (8%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ K N+ II EP EA F ++ E +GF P K P+
Sbjct: 26 DFDIEVPSKEQKKSNIYKGIITRIEPSLEAAFVNY-------GSEKHGFLPFKEIAPNFR 78
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
+ ++ + + + Q+++G +++VQ+ KE G KG LT Y L + +L+
Sbjct: 79 QRAEGDTSEGGRASIKD----QIKEGQEIVVQIEKEERGNKGAALTTYISLAGTYLVLMP 134
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ + G +SR+I G R L+ + L+ P+ GL +RT G S EELQ DL LL W
Sbjct: 135 NNPKAGGISRRIEGDTRNELREVMTALEIPDTMGLIVRTAGCGKSAEELQWDLNYLLQLW 194
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
+ I A E + P L+ + + ++D+ + ++++D +H V
Sbjct: 195 EAIERSAS----------EQSAPFLIFQESNVIIRALRDHLRGNIDEILIDKEEAFHLVQ 244
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+L+ + P + +LY +PLF ++ IE +I + V LP+GGS+VI+ TEAL SI
Sbjct: 245 KFLKQVMPHFLSKAKLYQDSVPLFSRYQIESQIEIAYGREVSLPSGGSIVIDHTEALTSI 304
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
D+N GS E+ L+ NL AA +IAR+LRLRD+GG+ V+DFIDM + N+R V
Sbjct: 305 DINSARAT--KGSDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMMANKNQRAVE 362
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSF 626
++ A++ DR+ ++ S +SR GL+E++R+R+RPS+ C C+G G + +E+
Sbjct: 363 NRLRDALKIDRARIQTSRISRFGLLEMSRQRLRPSLGESTQLICPRCKGQGTIRNVES-- 420
Query: 627 SKIEQEISRLLVSKSYNQSTFYFIRHIP 654
+ + R+L ++ T I H+P
Sbjct: 421 --VALAVLRVLEEEAMKPGTEKVIAHLP 446
Score = 43.9 bits (102), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL + +E + ++Y G++T++ P++ AFVN G+
Sbjct: 4 MLINATQPEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIITRIEPSLEAAFVNYGSE 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRT 160
+ + K I P FR R
Sbjct: 64 KHGFLPFKE-----IAPNFRQRA 81
>gi|415711903|ref|ZP_11464439.1| ribonuclease G [Gardnerella vaginalis 55152]
gi|388057636|gb|EIK80461.1| ribonuclease G [Gardnerella vaginalis 55152]
Length = 1155
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 202/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 656 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 715
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G + + ++KDLE L+ W+ I AK +E + G
Sbjct: 716 AIVSKIAPKDMGIIIRTAADGATEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 768
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 769 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 828
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 829 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 887
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 888 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 947
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 948 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 980
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 555 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 612
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 613 VQNVLPSMEAAFVDIGQARNGVL 635
>gi|291288274|ref|YP_003505090.1| ribonuclease, Rne/Rng family [Denitrovibrio acetiphilus DSM 12809]
gi|290885434|gb|ADD69134.1| ribonuclease, Rne/Rng family [Denitrovibrio acetiphilus DSM 12809]
Length = 507
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 149/421 (35%), Positives = 240/421 (57%), Gaps = 21/421 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHL-DGESNGFFPSKSEVPDDSHTSHPQGTK 277
V +VL + + +D G P+A F D ++ +GE F + + + + T Q T+
Sbjct: 46 VIKVLPGIQSAFVDVGLPKAAF--LPAADVYVENGERVSFLENNID-SERTVTDIDQMTE 102
Query: 278 D-SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
D K+ P + L+ +G +++VQV KE +G KG LT + + R+ +L+ + +GVS
Sbjct: 103 DEQKNIPPIEDMLK--EGQEIVVQVAKEAIGQKGARLTTHLTVPGRYIVLMPGYEHVGVS 160
Query: 337 RKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
RKI ER RL+ + K ++ GL RTV AGH EEL+ D++ L W I +
Sbjct: 161 RKIEDEQERDRLRDVLKAIKSPNMGLIARTVTAGHDEEELRADVDYLSRLWSKIKDK--- 217
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
+ G P L++ G I++D V ++V+D+ + ++ S+L++ PD
Sbjct: 218 --------MSGKSPCLIYEDHGLVFRILRDAATSDVSRIVIDNKAEFLKIKSFLREFLPD 269
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
+ V L+ IP+FD +NIE EI +L K+V L +GG ++I+Q EAL +DVN G F
Sbjct: 270 MNMEVSLFTNDIPIFDYYNIEIEIGRILDKKVWLKSGGYIIIDQAEALTVVDVNTGK--F 327
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
+ E IL NL A+K+IA +L+LR+IGGII+VDFIDMA + N++ V + ++ ++
Sbjct: 328 VGKRNFEDTILKTNLEASKEIAWQLKLRNIGGIIIVDFIDMAKEENQQKVMKALEHEMKS 387
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
DR+ V +S GL+EITRKRV+ S++ ++SE C C+G G V++ T I +E+ R
Sbjct: 388 DRAKASVVNISPLGLVEITRKRVQESLSRVLSEACPYCEGRGLVKSKLTICYDILREVRR 447
Query: 636 L 636
+
Sbjct: 448 I 448
>gi|421471759|ref|ZP_15920016.1| ribonuclease E/G family protein, partial [Burkholderia multivorans
ATCC BAA-247]
gi|400224696|gb|EJO54912.1| ribonuclease E/G family protein, partial [Burkholderia multivorans
ATCC BAA-247]
Length = 759
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 228/409 (55%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 37 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 81
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 82 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 141
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I ++A+ +
Sbjct: 142 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAI----EAASQSG 197
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ G P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 198 NPGQ----PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 253
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 254 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 311
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 312 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 371
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 372 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 420
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|359781625|ref|ZP_09284849.1| ribonuclease E [Pseudomonas psychrotolerans L19]
gi|359370689|gb|EHK71256.1| ribonuclease E [Pseudomonas psychrotolerans L19]
Length = 1090
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 150/420 (35%), Positives = 227/420 (54%), Gaps = 34/420 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF D H GF P K E+ + +P+G + K + +G +
Sbjct: 51 EAAFVDF-GADRH------GFLPLK-EISREYFKKNPEGRVNIKEV--------LSEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
V+VQV KE G KG LT + L R+ +L+ + R G +SR+I G ER L+ L
Sbjct: 95 VVVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLN 154
Query: 356 PEG-FGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
G GL +RT G S EELQ DL+ LL W I+E + E P L+++
Sbjct: 155 APGDMGLIVRTAGLGRSTEELQWDLDYLLQLWSAIIEASG----------ERKGPFLIYQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + +++VDS E S+++ + P +++LY +PLF++F
Sbjct: 205 ESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALSFIRQVMPQYASKIKLYQDSVPLFNRFQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA+
Sbjct: 265 IESQIETAFQREVKLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAE 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM N+R V + V++A+E DR+ V++ +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTPVKNQRAVEDRVREALEADRARVQIGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
R+R+RPS+ C C G G + +E+ + I RL+ ++ T H+P
Sbjct: 383 RQRLRPSLRETSGIVCPRCNGQGIIRDVES----LSLAILRLIEEEALKDRTAEVRAHVP 438
>gi|451812322|ref|YP_007448776.1| ribonuclease E [Candidatus Kinetoplastibacterium galatii TCC219]
gi|451778224|gb|AGF49172.1| ribonuclease E [Candidatus Kinetoplastibacterium galatii TCC219]
Length = 861
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 148/434 (34%), Positives = 235/434 (54%), Gaps = 35/434 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F ++ E H GF P K E+ K+
Sbjct: 40 NIYKGVITRVEPGLEACFINYGEDKH-------GFLPFK-EITKSYF-------KEGVDI 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
G + + +G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 KGARIQDVITEGLELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ + L PEG + RT G +L ELQ DL LL W I + A S
Sbjct: 145 EERQELRETMEQLTVPEGMSIIARTAGIGRTLNELQWDLSYLLQLWSAI-DKASS----- 198
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
E P+L++ + ++DYF+ + ++++D+ +VT+++ + PD RV
Sbjct: 199 ----ENQSPVLIYLESSLVIRAIRDYFSPNISEILIDNDDIVKQVTAFMSIVMPDNIQRV 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ + LP+GGS+VI+ TEALV+IDVN G+
Sbjct: 255 KHYQSDVPLFSRFQIEHQIETAYSRMIQLPSGGSIVIDHTEALVAIDVNSAKST--RGAD 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L N AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + +K+++ DR+ V
Sbjct: 313 IEETALRTNQEAADEVARQLRLRDLGGLIVIDFIDMDDSKNQRSVEQRLKESLRVDRARV 372
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSK 640
++ ++S+ GL+E++R+R+RP++ + C C GTG + E+S +I RL+ +
Sbjct: 373 QMGKISKFGLIELSRQRLRPALNEDSHKTCPRCTGTGVIRDTESS----ALQILRLIQEE 428
Query: 641 SYNQSTFYFIRHIP 654
+ + T+ +P
Sbjct: 429 AMKEGTYIIHAQVP 442
>gi|445498793|ref|ZP_21465648.1| ribonuclease E [Janthinobacterium sp. HH01]
gi|444788788|gb|ELX10336.1| ribonuclease E [Janthinobacterium sp. HH01]
Length = 1012
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 201/341 (58%), Gaps = 14/341 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQV KE G KG LT++ L R+ +L+ + R G VSR++ G ER L+
Sbjct: 93 LREGQEIMVQVEKEERGNKGAALTSFVSLAGRYLVLMPNNPRGGGVSRRVEGEERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G + RT G +++ELQ DL L+ W+ I KSA+ A
Sbjct: 153 TMDKLDLPPGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGKSASGA--------- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ Y + ++ + PD+ RV+ Y +P
Sbjct: 204 -FLIYQESSLVIRAIRDYFQPDIGEILIDTDDIYEQAHQFMSHVMPDMVHRVKRYSDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALVS+DVN GS E +
Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARAT--RGSDIETTAFNT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA+++AR+LRLRD+GG+IV+DFIDM N+R V + +K A+ DR+ V++ ++SR
Sbjct: 321 NCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQRLKDALHHDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RPS++ C C GTG + E+S ++
Sbjct: 381 GLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQV 421
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSYGED 63
Query: 138 RPSLMDIK-----HYRE 149
R + K ++RE
Sbjct: 64 RHGFLPFKEVARTYFRE 80
>gi|237653102|ref|YP_002889416.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T]
gi|237624349|gb|ACR01039.1| ribonuclease, Rne/Rng family [Thauera sp. MZ1T]
Length = 1061
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 151/419 (36%), Positives = 227/419 (54%), Gaps = 37/419 (8%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ ++I EP EA F D+ D H GF P K +
Sbjct: 26 DLDIESAAKEERKSNIYKAVITRIEPSLEAAFVDY-GADRH------GFLPFK-----EI 73
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
S+ Q D+K + E +++G ++IVQV K+ G KG LT Y L R+ +L+
Sbjct: 74 SRSYFQPGADAKASIKEA----LKEGQELIVQVEKDERGNKGAALTTYISLAGRYLVLMP 129
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ER L+ L P+G L RT A G S EELQ DL LL W
Sbjct: 130 NNPRGGGVSRRVEGDERAELRENMDQLDVPQGMSLIARTAAIGRSAEELQWDLNYLLQLW 189
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A +G GA L+++ + ++DYF + ++++D+ + + T
Sbjct: 190 TAIE--------GAAQGQSGA--FLIYQEGSLVIRAIRDYFQPDIGEILIDTDDIFEQAT 239
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++ + P RV+ Y +PLF +F IE +I + S++V LP+GG++VI+ TEALVSI
Sbjct: 240 QFMAHVMPGNVARVKRYSDDVPLFSRFQIEHQIESAYSRQVNLPSGGAVVIDHTEALVSI 299
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G GS E+ N AA +IAR+LRLRD+GG+IV+DFIDM N+R V
Sbjct: 300 DVNSGRAT--KGSDIEETAFRTNCEAADEIARQLRLRDLGGLIVIDFIDMESAKNQREVE 357
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ A+ DR+ V+ ++SR GL+E++R+R+RP++ C C GTG + + E+S
Sbjct: 358 NRLRDALRHDRARVQTGKISRFGLLELSRQRLRPALAETSYITCPRCNGTGHIRSTESS 416
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y V+T++ P++ AFV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEERKSNIYKAVITRIEPSLEAAFVDYGAD 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K + P
Sbjct: 64 RHGFLPFKEISRSYFQP 80
>gi|90415858|ref|ZP_01223791.1| ribonuclease E [gamma proteobacterium HTCC2207]
gi|90332232|gb|EAS47429.1| ribonuclease E [gamma proteobacterium HTCC2207]
Length = 1008
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 199/331 (60%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++ VQV KE G+KG LT + L R+ +L+ + R G +SR+I G ER L+
Sbjct: 94 IREGQEIFVQVEKEERGSKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERADLRE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L PEG G +RT G + EELQ DL+ LL W I A+ A
Sbjct: 154 AMRGLDIPEGMGAIVRTAGIGRATEELQWDLDYLLQLWNTIEAEAEGAK----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L + + ++DY + V +++VDS Y+ +++ + PD ++V+ Y ++IP
Sbjct: 204 PHFLFQESNVIVRAIRDYLRQDVGEVIVDSQDAYNLAAAFIGTVMPDFTNKVKFYQEQIP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ IE +I + V LP+GGS+VI+ TEA+VSID+N G E+ +
Sbjct: 264 LFNRYQIENQIETAFRREVSLPSGGSIVIDITEAMVSIDINSARAT--KGGDIEETAFNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA+++AR+LRLRD+GG+IV+DFIDM + +++ V +++A++ DR+ V+V +SR
Sbjct: 322 NKEAAEEVARQLRLRDVGGLIVIDFIDMLNTRHQKEVENTIREALKIDRARVQVGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+RPS+ +S+ C C+G G +
Sbjct: 382 GLLEMSRQRLRPSLEETMSKICPRCKGQGTI 412
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN+S R+A+++ +KL +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINASHTEEVRVAMVDGQKLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDYGAD 63
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 64 RHGFLPLKEISREYF 78
>gi|415727795|ref|ZP_11471483.1| ribonuclease G [Gardnerella vaginalis 6119V5]
gi|388065622|gb|EIK88101.1| ribonuclease G [Gardnerella vaginalis 6119V5]
Length = 1091
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 201/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 606 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 665
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E +QKDLE L+ W I AK +E + G
Sbjct: 666 AIVSKIAPKDMGIIIRTAAEGASEEAIQKDLESLVKQWDRI--EAKR-----EEYLHGKR 718
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + + YL+ +APDL +VE +D
Sbjct: 719 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVHQRINEYLEMMAPDLLSKVEYWDPAEH 778
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V L +GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 779 EGKDIFDKWQIDSQLRKGMERQVYLQSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 837
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 838 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 897
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 898 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 930
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG + ++P+M AFV+IG +R ++
Sbjct: 532 QISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVL 585
>gi|344344882|ref|ZP_08775741.1| ribonuclease, Rne/Rng family [Marichromatium purpuratum 984]
gi|343803576|gb|EGV21483.1| ribonuclease, Rne/Rng family [Marichromatium purpuratum 984]
Length = 1008
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 212/366 (57%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
V++G +V+VQ+ KE G KG LT + L R+ +L+ + R G VSR+I G +R+ L+
Sbjct: 95 VREGREVVVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGQDRSELRD 154
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ PE GL +RT G S+EELQ DL+ LL WK I G +
Sbjct: 155 AMSQLEIPEDMGLIVRTAGVGKSVEELQWDLDYLLQLWKAI----------ETSGEQRKA 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DY + ++V+D P Y ++++ + P ++ YD +P
Sbjct: 205 PFLIYQESDVIIRSIRDYLRADIGEIVIDDPAVYERAETFIRQVMPQNIKKLRRYDDEVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ IE +I + + V LP+GGS+VI+ EAL +ID+N G+ E+ L+
Sbjct: 265 LFTRYQIETQIESAFQREVRLPSGGSIVIDHGEALTAIDINSARAT--KGADIEETALNT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+ V+DFIDM N+R V +++A+++DR+ V+V+ +SR
Sbjct: 323 NLEAADEIARQLRLRDLGGLFVIDFIDMTPPKNQREVENRLREALKQDRARVQVARISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+RPS+ + C C+G G + +++ + I R++ ++ +T
Sbjct: 383 GLLEMSRQRLRPSLGESSQQVCPRCKGQGTIRGVDS----LGLSILRVIEEEAMKDNTQR 438
Query: 649 FIRHIP 654
+ H+P
Sbjct: 439 ILAHLP 444
>gi|357399239|ref|YP_004911164.1| hypothetical protein SCAT_1637 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337765648|emb|CCB74357.1| conserved protein of unknown function [Streptomyces cattleya NRRL
8057 = DSM 46488]
Length = 1243
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 646 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 705
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL +D+ L + W+ I ++AK+ G P
Sbjct: 706 LKKIVPENAGVIVRTAAEGASEEELSRDVSRLQAQWEEIQKNAKN----------GNAPS 755
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+++ + + Y+ +APDL DR++ + + +F
Sbjct: 756 LLYGEPDMTVRVVRDIFNEDFSKVIISGDDAWETIHGYVSHVAPDLTDRLQKWTSEVDVF 815
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 816 ATYRIDEQLLKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 874
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 875 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 934
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 935 IQMTRKRVGQGLLESFSETCVHCNGRG 961
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 570 QIGVLEDGVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 623
>gi|134295141|ref|YP_001118876.1| ribonuclease E [Burkholderia vietnamiensis G4]
gi|134138298|gb|ABO54041.1| RNAse E [Burkholderia vietnamiensis G4]
Length = 1074
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNSGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|297538697|ref|YP_003674466.1| Rne/Rng family ribonuclease [Methylotenera versatilis 301]
gi|297258044|gb|ADI29889.1| ribonuclease, Rne/Rng family [Methylotenera versatilis 301]
Length = 894
Score = 235 bits (600), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 147/423 (34%), Positives = 230/423 (54%), Gaps = 40/423 (9%)
Query: 209 DEEHDGDDFDVSEVLKNVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPD 266
D EH G + S + K V I EP EA F D+ H GF P K EV
Sbjct: 28 DIEHAGKEQRKSNIYKGVITRI----EPSLEAAFVDYGMDRH-------GFLPFK-EVAR 75
Query: 267 DSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFW 324
+ G K+ +Q +++G ++IVQV K+ G KG LT + L R+
Sbjct: 76 SYYKEGADG----------KSRIQDALKEGQELIVQVDKDERGNKGAALTTFISLAGRYL 125
Query: 325 ILITSCDRIG-VSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGL 382
+L+ + R G VSR+I G +R L+ V+A+ P+G + RT G + EELQ DL L
Sbjct: 126 VLMPNNPRGGGVSRRIEGEDRDELRDVLAQLEVPKGMSIIARTAGIGRNAEELQWDLNYL 185
Query: 383 LSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTY 442
W I A A G L+++ + ++DYF+ + ++++D+P +
Sbjct: 186 TQLWTAI-----DGASAMQAGA-----YLIYQEGSLVIRAIRDYFSSDIGEILIDTPDIH 235
Query: 443 HEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEA 502
+ ++ + P +RV+LY IPLF +F IE +I + ++ V LP+GG++VI+ TEA
Sbjct: 236 EQAVQFMNHVMPGNVNRVKLYQDEIPLFTRFQIEHQIESAFAREVRLPSGGAIVIDHTEA 295
Query: 503 LVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNK 562
LVS+DVN G GS E + N+ AA+++AR+LRLRD+GG++V+DFIDM N+
Sbjct: 296 LVSVDVNSGRAT--RGSDIEHTAFNTNIEAAEEVARQLRLRDLGGLVVIDFIDMESQRNQ 353
Query: 563 RLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEAL 622
R V ++ A+ DR+ V+ ++SR GL+E++R+R+RPS+ PC C GTG + +
Sbjct: 354 REVENALRDALHVDRARVQTGKISRFGLLELSRQRLRPSLGETNHIPCPRCSGTGHIRGI 413
Query: 623 ETS 625
E++
Sbjct: 414 EST 416
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P++ AFV+ G
Sbjct: 4 MLFNATQSEELRVAIVDGQKLIDLDIEHAGKEQRKSNIYKGVITRIEPSLEAAFVDYGMD 63
Query: 138 RPSLMDIK-----HYRE 149
R + K +Y+E
Sbjct: 64 RHGFLPFKEVARSYYKE 80
>gi|357040174|ref|ZP_09101963.1| ribonuclease, Rne/Rng family [Desulfotomaculum gibsoniae DSM 7213]
gi|355356838|gb|EHG04619.1| ribonuclease, Rne/Rng family [Desulfotomaculum gibsoniae DSM 7213]
Length = 564
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 226/386 (58%), Gaps = 19/386 (4%)
Query: 253 ESNGFFPSKSEVPDDS-HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
E N F + +P + T QG G +++G +VIVQ+VKE +GTKG
Sbjct: 63 EKNAFLYVEDAIPARTPDTGQGQGNS----ALGTNICDILKQGQEVIVQIVKEPIGTKGA 118
Query: 312 TLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGH 370
+T + L R+ +L+ + D IG+SR+I ER RL+ +A ++P+G G+ +RTVA G
Sbjct: 119 RVTTHITLPGRYLVLMPTVDYIGISRRIEDDKERDRLREMAARIKPDGMGVIVRTVADGV 178
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
EEL D+ L + W+ I+ + G VP LLHR + I++D F E
Sbjct: 179 DEEELLLDINMLTNLWRKIVNRSN----------HGPVPNLLHRDLELVQRILRDIFTED 228
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
V ++++DS Y ++ L + P L +V L D+R LF++ N++ EI L + V L
Sbjct: 229 VDRLIIDSRYEYEKILDLLDILGPSLKVKVFL-DERNNLFEENNVDLEIEKALKRTVWLK 287
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
GG +VI+Q EAL +IDVN G + ++ E +L NL AA +IAR+LRLR+IGGII+
Sbjct: 288 CGGYIVIDQAEALTAIDVNTGK--YVGSTNLEDTVLKTNLDAALEIARQLRLRNIGGIII 345
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
VDFIDM + ++R V + +++ + +D++ + + +++ GL+EITRK+VRPS+ ++ + C
Sbjct: 346 VDFIDMNQEEHRRQVLDVLEEEIHKDKTKINILGITQLGLVEITRKKVRPSLAEVLQKAC 405
Query: 611 TCCQGTGRVEALETSFSKIEQEISRL 636
C G G+V + ET I+Q+I ++
Sbjct: 406 PYCDGRGKVLSEETVGINIKQQIYQM 431
>gi|221214112|ref|ZP_03587085.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD1]
gi|221166289|gb|EED98762.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD1]
Length = 1056
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 228/409 (55%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I ++A+ +
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAI----EAASQSG 200
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ G P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 201 NPGQ----PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|386355287|ref|YP_006053533.1| hypothetical protein SCATT_16400 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|365805795|gb|AEW94011.1| hypothetical protein SCATT_16400 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 1222
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 625 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 684
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL +D+ L + W+ I ++AK+ G P
Sbjct: 685 LKKIVPENAGVIVRTAAEGASEEELSRDVSRLQAQWEEIQKNAKN----------GNAPS 734
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+++ + + Y+ +APDL DR++ + + +F
Sbjct: 735 LLYGEPDMTVRVVRDIFNEDFSKVIISGDDAWETIHGYVSHVAPDLTDRLQKWTSEVDVF 794
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 795 ATYRIDEQLLKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 853
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 854 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGL 913
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 914 IQMTRKRVGQGLLESFSETCVHCNGRG 940
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 549 QIGVLEDGVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 602
>gi|221201328|ref|ZP_03574367.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD2M]
gi|221208808|ref|ZP_03581806.1| ribonuclease, Rne/Rng family protein [Burkholderia multivorans
CGD2]
gi|221171264|gb|EEE03713.1| ribonuclease, Rne/Rng family protein [Burkholderia multivorans
CGD2]
gi|221178596|gb|EEE11004.1| ribonuclease E (RNase E) [Burkholderia multivorans CGD2M]
Length = 1053
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 228/409 (55%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I ++A+ +
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAI----EAASQSG 200
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ G P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 201 NPGQ----PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 43.1 bits (100), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|161525363|ref|YP_001580375.1| ribonuclease [Burkholderia multivorans ATCC 17616]
gi|160342792|gb|ABX15878.1| ribonuclease, Rne/Rng family [Burkholderia multivorans ATCC 17616]
Length = 1111
Score = 235 bits (600), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 224/409 (54%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 97 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 141
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 142 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 201
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 202 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 253
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 254 SQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 313
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 314 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 371
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 372 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 431
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 432 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 480
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 61 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 120
Query: 138 RPSLMDIK 145
R + K
Sbjct: 121 RHGFLPFK 128
>gi|441504932|ref|ZP_20986924.1| Ribonuclease E [Photobacterium sp. AK15]
gi|441427514|gb|ELR64984.1| Ribonuclease E [Photobacterium sp. AK15]
Length = 1056
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 209/385 (54%), Gaps = 31/385 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP-QGTKDSKHTPGEKTWLQVQKGT 295
EA F D+ E +GF P K D + QG + K +++G
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIARDYFPADYTYQGRPNIKEV--------LKEGQ 95
Query: 296 KVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTL 354
+VIVQV KE G KG LT + L + +L+ + R G +SR+I G ERT+LK TL
Sbjct: 96 EVIVQVDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGEERTQLKAALSTL 155
Query: 355 Q-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+G GL +RT G S E+L DL LL+ W+ + A SA P L+H
Sbjct: 156 DLPQGMGLIVRTAGVGKSAEDLAYDLNYLLNHWERVKGAADSAP----------APFLIH 205
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDK-RIPLFDK 472
+ ++DY + ++V+DS + Y ++++ + PD RV+LY+ PLF+
Sbjct: 206 QESNVIARAIRDYLRRDIGEIVIDSKKIYDRARNHIEQVRPDFLSRVKLYENTETPLFNH 265
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL A
Sbjct: 266 YQIENQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALQTNLEA 323
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E
Sbjct: 324 ADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRMDRARVQIGRISRFGLLE 383
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTG 617
++R+R+ PS+ C C GTG
Sbjct: 384 MSRQRLSPSLAEASHHVCPRCSGTG 408
>gi|415719041|ref|ZP_11467578.1| ribonuclease G [Gardnerella vaginalis 1500E]
gi|388059468|gb|EIK82200.1| ribonuclease G [Gardnerella vaginalis 1500E]
Length = 1086
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 201/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 622 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 681
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E +QKDLE L+ W I AK +E + G
Sbjct: 682 AIVSKIAPKDMGIIIRTAAEGASEEAIQKDLESLVKQWDRI--EAKR-----EEYLHGKR 734
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + + YL+ +APDL +VE +D
Sbjct: 735 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGDGVHQRINEYLEMMAPDLLSKVEYWDPAEH 794
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V L +GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 795 EGKDIFDKWQIDSQLRKGMERQVYLQSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 853
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 854 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 913
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 914 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 946
Score = 42.0 bits (97), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG + ++P+M AFV+IG +R ++
Sbjct: 548 QISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVL 601
>gi|163803776|ref|ZP_02197631.1| ribonuclease E [Vibrio sp. AND4]
gi|159172417|gb|EDP57288.1| ribonuclease E [Vibrio sp. AND4]
Length = 1029
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 100 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I + S + P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKGASDS----------NSAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++ +DS Y +++ + PD RV+ YD +PLF +
Sbjct: 210 ESNVIVRAIRDYLRRDIGEISIDSNTIYERAKEHIKLVRPDFVSRVKKYDGEVPLFSHYQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 388 RQRLSPSLAEASHHICPRCTGTGVV 412
>gi|415725829|ref|ZP_11470380.1| ribonuclease G [Gardnerella vaginalis 00703Dmash]
gi|388064165|gb|EIK86728.1| ribonuclease G [Gardnerella vaginalis 00703Dmash]
Length = 1069
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 201/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 605 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 664
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E +QKDLE L+ W I AK +E + G
Sbjct: 665 AIVSKIAPKDMGIIIRTAAEGASEEAIQKDLESLVKQWDRI--EAKR-----EEYLHGKR 717
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + + YL+ +APDL +VE +D
Sbjct: 718 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVHQRINEYLEMMAPDLLSKVEYWDPAEH 777
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V L +GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 778 EGKDIFDKWQIDSQLRKGMERQVYLQSGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 836
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 837 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 896
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 897 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 929
Score = 41.6 bits (96), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG + ++P+M AFV+IG +R ++
Sbjct: 531 QISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDIGQARNGVL 584
>gi|415715176|ref|ZP_11465772.1| ribonuclease G [Gardnerella vaginalis 1400E]
gi|388058753|gb|EIK81537.1| ribonuclease G [Gardnerella vaginalis 1400E]
Length = 1167
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 202/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 656 LAFKAGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGAMTGVSRKLSDRERSRLR 715
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G + + ++KDLE L+ W+ I AK +E + G
Sbjct: 716 AIVSKIAPKDMGIIIRTAADGATEDAIEKDLESLVKQWERI--EAKR-----EEFLHGKR 768
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +KM+V+ Y + YL+ +APDL ++E +D
Sbjct: 769 PKLLQGEPDVAIRVVRDIFNDDFQKMIVEGKGAYDRICEYLEMMAPDLRSKIEYWDPAEH 828
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 829 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 887
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 888 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 947
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 948 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 980
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 60 LLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGV 119
LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YLG
Sbjct: 555 LLMEQDFLARRENVDRLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYLGR 612
Query: 120 VTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG +R ++
Sbjct: 613 VQNVLPSMEAAFVDIGQARNGVL 635
>gi|291278456|ref|YP_003495291.1| ribonuclease E and G [Deferribacter desulfuricans SSM1]
gi|290753158|dbj|BAI79535.1| ribonuclease E and G [Deferribacter desulfuricans SSM1]
Length = 507
Score = 235 bits (599), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 136/358 (37%), Positives = 209/358 (58%), Gaps = 16/358 (4%)
Query: 280 KHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI 339
+H P E +Q+G +++VQV KE +G KG LT + + R+ +L+ + IGVSRKI
Sbjct: 104 QHIPIED---MIQEGQEIVVQVAKEPIGQKGARLTTHLTIPGRYLVLMPYYNHIGVSRKI 160
Query: 340 TGVE-RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAAL 398
E R RLK I ++PE FGL RTV+ G + E+L+ DL+ LL W + E A
Sbjct: 161 ENEEERERLKGILTEIKPENFGLIARTVSEGSTKEDLESDLDYLLRIWNKLSEKMDGAN- 219
Query: 399 AADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCD 458
P L+++ + ++D + K+++D+ + ++ ++ ++ P+L
Sbjct: 220 ---------APQLIYKDLELLYRTLRDITTNDISKIIIDNRSDFLKLKTFQREYFPNLDI 270
Query: 459 RVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHG 518
++LY+ IP+FD +NIE EIN M + V L +GG +VI+Q EAL IDVN G +
Sbjct: 271 EIKLYENSIPIFDYYNIEIEINRMFDRVVWLKSGGYIVIDQAEALTVIDVNTGK--YVGK 328
Query: 519 SSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRS 578
+ E+ IL NL AAK+IA +L+LR+IGGII+VDFIDM D + V + + + ++DR
Sbjct: 329 RNFEETILKTNLEAAKEIAYQLKLRNIGGIIIVDFIDMEKDEHIEKVLQTLNQEFKKDRG 388
Query: 579 MVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
V V +S GL EITRKRV+ S+T +SE C C+G G +++ T I +EI R+
Sbjct: 389 KVTVVNISPLGLFEITRKRVKESITKALSENCPYCEGRGFIKSKVTVCYDILREIRRI 446
Score = 42.0 bits (97), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S I+INS++ R+A+LE+ + E+ +E K ++Y G + K++P M AFV+
Sbjct: 1 MSKEIIINSTV-NETRVAILENGSVSEIYIERHKKKGVAGNIYKGKIVKVLPGMQSAFVD 59
Query: 134 IGNSRPSLMDI 144
IG + + + +
Sbjct: 60 IGLDKAAFLHV 70
>gi|421475427|ref|ZP_15923379.1| ribonuclease E/G family protein, partial [Burkholderia multivorans
CF2]
gi|400230207|gb|EJO60011.1| ribonuclease E/G family protein, partial [Burkholderia multivorans
CF2]
Length = 740
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 228/409 (55%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q KD
Sbjct: 37 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGVDM 81
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 82 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 141
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I ++A+ +
Sbjct: 142 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAI----EAASQSG 197
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ G P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 198 NPGQ----PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 253
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 254 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 311
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 312 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 371
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 372 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 420
Score = 43.5 bits (101), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|262166133|ref|ZP_06033870.1| ribonuclease E [Vibrio mimicus VM223]
gi|262025849|gb|EEY44517.1| ribonuclease E [Vibrio mimicus VM223]
Length = 1028
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 211/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|312195823|ref|YP_004015884.1| ribonuclease, Rne/Rng family [Frankia sp. EuI1c]
gi|311227159|gb|ADP80014.1| ribonuclease, Rne/Rng family [Frankia sp. EuI1c]
Length = 1230
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ VER+RLK I
Sbjct: 686 LKPGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPDGQNAGISRKLPDVERSRLKSI 745
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I A+ A+ P
Sbjct: 746 LKKITPEDGGVIVRTAAEGASEQELERDIERLAAQWEDISRKAQKAS----------APA 795
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +++D FNE +++V ++ SY+ +APDL +RV + LF
Sbjct: 796 LLYGEPDLVVRVIRDIFNEDFTELLVQGSGEAEQIESYVDLVAPDLRNRVRRHVGTTDLF 855
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ ++E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 856 TEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGKGGNLEETVTKNNL 914
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 915 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 974
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SEPC C G G
Sbjct: 975 VQMTRKRVGQGLLEAYSEPCAHCNGRG 1001
>gi|395763620|ref|ZP_10444289.1| ribonuclease E [Janthinobacterium lividum PAMC 25724]
Length = 1071
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 200/341 (58%), Gaps = 14/341 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQV KE G KG LT++ L R+ +L+ + R G VSR++ G ER L+
Sbjct: 93 LREGQEIMVQVEKEERGNKGAALTSFVSLAGRYLVLMPNNPRGGGVSRRVEGEERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G + RT G +++ELQ DL L+ W+ I KSA A
Sbjct: 153 TMDKLDLPAGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGKSANGA--------- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ Y + ++ + PD+ RV+ Y +P
Sbjct: 204 -FLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYDQAHQFMSHVMPDMVHRVKRYSDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALVS+DVN GS E +
Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARAT--RGSDIETTAFNT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA+++AR+LRLRD+GG+IV+DFIDM N+R V + +K A+ DR+ V++ ++SR
Sbjct: 321 NCEAAEEVARQLRLRDLGGLIVIDFIDMEVAKNQREVEQRLKDALHHDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RPS++ C C GTG + E+S ++
Sbjct: 381 GLMELSRQRLRPSLSEGSHVTCPRCSGTGHIRDTESSALQV 421
Score = 40.0 bits (92), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKSNIYKGVITRIEPSLEACFVSYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|88810810|ref|ZP_01126067.1| RNase E [Nitrococcus mobilis Nb-231]
gi|88792440|gb|EAR23550.1| RNase E [Nitrococcus mobilis Nb-231]
Length = 910
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 124/366 (33%), Positives = 214/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQV KE G KG LT + L R+ +L+ + R G VSR+I G +R ++
Sbjct: 92 IREGQELVVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGQDRNEIRD 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++L PEG GL +RT G S+EELQ DL+ LL+ W +I + A E
Sbjct: 152 ALRSLDVPEGMGLIVRTAGVGRSVEELQWDLDYLLNLWMSIQKAA----------AERNA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L+++ + ++DY + +++VD P Y + ++Q + P +++ Y +P
Sbjct: 202 PLLIYQESNVIIRALRDYLRNDIAEILVDDPDVYEQAKGFIQQVMPHNLAKLKPYQDNVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF ++ +E +I + + + LP+GG++VI++TEAL+SID+N G+ E+ L
Sbjct: 262 LFTRYQLESQIESAFQREIRLPSGGAIVIDRTEALISIDINSSRAT--KGADIEETALQT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IVVDFIDM + N+R V +++AV+ DR+ V+V +SR
Sbjct: 320 NNEAADEVARQLRLRDLGGLIVVDFIDMGANRNQREVENRLREAVKMDRARVQVGRISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+ S+ E C+ C G G V +E+ + + R++ ++ + T
Sbjct: 380 GLLEMSRQRLHTSLGESSQEVCSRCGGRGTVRGVES----LALAVLRIIEEEAMKEKTHK 435
Query: 649 FIRHIP 654
+ +P
Sbjct: 436 VLAQLP 441
>gi|424807257|ref|ZP_18232665.1| ribonuclease E [Vibrio mimicus SX-4]
gi|342325199|gb|EGU20979.1| ribonuclease E [Vibrio mimicus SX-4]
Length = 1031
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 211/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|258625454|ref|ZP_05720347.1| ribonuclease E [Vibrio mimicus VM603]
gi|258582258|gb|EEW07114.1| ribonuclease E [Vibrio mimicus VM603]
Length = 1034
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 211/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPHCKGTG 410
>gi|357389537|ref|YP_004904376.1| putative ribonuclease [Kitasatospora setae KM-6054]
gi|311896012|dbj|BAJ28420.1| putative ribonuclease [Kitasatospora setae KM-6054]
Length = 1238
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 198/327 (60%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ERTRLK I
Sbjct: 614 LKSGQSVLVQVSKDPIGHKGARLTSQISLPGRYLVYVPEGSMTGISRKLPENERTRLKQI 673
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P+ G+ +RT A G S EEL +D++ L W+ I + A + G P
Sbjct: 674 LKKIVPDDAGVIVRTAAEGASEEELTRDVQRLQQQWEEIQKKAAT----------GNAPA 723
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V ++ + Y+ ++APDL +R++ + + +F
Sbjct: 724 LLYGEPDMTVRVVRDIFNEDFTKVIVSGTDAWNTIHDYVSNVAPDLTERLQRWTSDVDVF 783
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + N+
Sbjct: 784 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMIVVDVNTGK-FVGQGGNLEETVTRNNI 842
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 843 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 902
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SEPC C G G
Sbjct: 903 VQMTRKRVGQGLLESFSEPCVHCNGRG 929
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 517 FLARRESVERVMVVRQNGARTQ-IGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 575
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 576 MEAAFVDIGKGRNAVL 591
>gi|154490933|ref|ZP_02030874.1| hypothetical protein PARMER_00850 [Parabacteroides merdae ATCC
43184]
gi|423724866|ref|ZP_17699008.1| rne/Rng family ribonuclease [Parabacteroides merdae CL09T00C40]
gi|154088681|gb|EDN87725.1| S1 RNA binding domain protein [Parabacteroides merdae ATCC 43184]
gi|409236038|gb|EKN28847.1| rne/Rng family ribonuclease [Parabacteroides merdae CL09T00C40]
Length = 526
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 200/329 (60%), Gaps = 14/329 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+ KE + TKGP LT+ R+ +LI D++ VS KI + ER RL+ + +
Sbjct: 122 GQEVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERARLRQLIQ 181
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK-NIMEHAKSAALAADEGVEGAVPIL 411
+++P+ F + +RT + G + EL +L+ LL W+ NI + K A P L
Sbjct: 182 SIKPKNFSVIVRTSSEGKRVAELDHELKTLLKRWEENIPKITKVKA-----------PAL 230
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
++ + +++++D FN + + V+ YH + Y+ IAP + V+ Y +P+FD
Sbjct: 231 IYEETARAVALLRDIFNPSFQNIYVNDADIYHNIRDYVSLIAPGREEIVQRYTGELPIFD 290
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F I ++I ++ + V +G L+IE TEA+ IDVN G+ G ++EK +DVN A
Sbjct: 291 NFAITKQIKSLFGRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKG-SDAQEKTAIDVNTA 349
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GGIIVVDFIDMA+ +N++ ++E + KA+ DR+ + LS+ GLM
Sbjct: 350 AADEIARQLRLRDMGGIIVVDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLM 409
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVE 620
+ITR+RVRP++ SE C C GTG ++
Sbjct: 410 QITRQRVRPAMDVDTSEACPTCFGTGTIK 438
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IAVLED+ LVEL E + +YLG V KL+P + AF+++G + + + HY +
Sbjct: 16 IAVLEDKNLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDVGYKKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK 161
+ P F + K
Sbjct: 73 --LGPNFNTQQK 82
>gi|116749264|ref|YP_845951.1| ribonuclease [Syntrophobacter fumaroxidans MPOB]
gi|116698328|gb|ABK17516.1| RNAse E [Syntrophobacter fumaroxidans MPOB]
Length = 495
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 144/412 (34%), Positives = 232/412 (56%), Gaps = 35/412 (8%)
Query: 220 SEVLKNVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK 277
+V+ N+ I+ +P +A F ++ E NGF P P+ HP+ +
Sbjct: 36 GKVVGNIYKGIVTHVQPSLQAAFVNY-------GMERNGFLP----FPE----IHPEYYE 80
Query: 278 DSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGV 335
+ E+ +Q + G +V+VQVVKE LG+KG LT Y L R +L+ + GV
Sbjct: 81 EDSD---ERVRIQDVIHSGQEVLVQVVKEELGSKGALLTTYISLAGRDVVLMPGQSQRGV 137
Query: 336 SRKIT-GVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
SRKI G +R RLK +A L+ PE FG+ +RT A G + E+ KD L+ W+ I +H
Sbjct: 138 SRKIEDGGQRERLKELAGDLKVPEEFGVILRTAAEGRTKREVTKDFNHLMKIWEEIRKHV 197
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ E P L+++ + +++DYFN +K ++VD +V +++ I+
Sbjct: 198 Q----------ETPAPALIYKEQDLAVRVIRDYFNPNIKTILVDDREVLKQVKDFIRIIS 247
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P V Y + P+ K+N+EE+I + K+VPL +GG LVI+ TEALV++DVN G
Sbjct: 248 PRHDRVVRFYKEDGPITGKYNLEEQIAQIFRKKVPLKSGGHLVIDPTEALVAVDVNSGRT 307
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
G G+ +E + VN+ AA +I R+LRLRD+GG+IV+DFIDM D+ + R V +K+ +
Sbjct: 308 NSGEGALEE-MVFKVNMEAAAEIPRQLRLRDLGGLIVIDFIDMRDNRHTREVERRLKEEI 366
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++D++ + V +SR GL+E++R+ + ++ + C CQG G V + ET+
Sbjct: 367 KKDKAKITVGRISRFGLLELSRQHLGLNIMRGSYKECPLCQGAGMVRSAETT 418
>gi|424033464|ref|ZP_17772878.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HENC-01]
gi|408874713|gb|EKM13881.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HENC-01]
Length = 1025
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 211/385 (54%), Gaps = 28/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P+G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPEGY-TYQGRPSIKEVLT--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G+KG LT + L + +L+ + R G +SR+I G ERT+LK TL+
Sbjct: 97 VIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL+ W I A S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWGAIKGAADS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD RV+ Y+ +PLF +
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNTIYERAKEHIKLVRPDFISRVKKYEGEVPLFSHYQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRLDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+ PS+ C C GTG V
Sbjct: 385 RQRLSPSLAEASHHICPRCSGTGVV 409
>gi|262170982|ref|ZP_06038660.1| ribonuclease E [Vibrio mimicus MB-451]
gi|261892058|gb|EEY38044.1| ribonuclease E [Vibrio mimicus MB-451]
Length = 1034
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 211/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|414153460|ref|ZP_11409786.1| Ribonuclease G [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
gi|411455139|emb|CCO07689.1| Ribonuclease G [Desulfotomaculum hydrothermale Lam5 = DSM 18033]
Length = 559
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 140/387 (36%), Positives = 229/387 (59%), Gaps = 24/387 (6%)
Query: 253 ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKG 310
E N F V D + HP ++ H G + +++G ++IVQ+VKE +GTKG
Sbjct: 63 EKNAFL----YVEDAQPSRHP----EAAHQTGLHVNIGDILKQGQEIIVQIVKEPIGTKG 114
Query: 311 PTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAG 369
P +T + L R+ +L+ + D IG+SR+I + ER RLK +A ++PEG G+ +RTVA G
Sbjct: 115 PRVTTHITLPGRYLVLMPTVDYIGISRRIESEKERERLKELAARVKPEGMGVIVRTVAEG 174
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
EE ++D+ L W+ I A + A P LLHR + +++D F+E
Sbjct: 175 VEEEEFRQDILLLSKLWRKIQNRAANTA----------APNLLHRDLELVQRMLRDIFSE 224
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
V ++ +DS Y + L I P L +V L D+R +F+ + I E+ L ++V L
Sbjct: 225 DVDRLTLDSRSEYEKTLEILDMINPRLKQKVFL-DERENIFEDYGIAVELEKALKRKVWL 283
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549
G LVI+Q EAL +IDVN G + ++ E +L NL AA +IAR+LRLR+IGGII
Sbjct: 284 KCGAYLVIDQAEALTAIDVNTGK--YVGSTTLEDTVLKTNLDAAVEIARQLRLRNIGGII 341
Query: 550 VVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEP 609
+VDFIDMA++ +++ V +++ +++D++ + +++ GL+E+TRK+VRPS+ ++ +P
Sbjct: 342 IVDFIDMAEEEHRQQVLATLEEEIKKDKTKTNILGITQLGLVEMTRKKVRPSLAEVVQKP 401
Query: 610 CTCCQGTGRVEALETSFSKIEQEISRL 636
C C+G G+V + ET +++ +I +L
Sbjct: 402 CPYCEGRGKVLSEETVSIQLKSQIYQL 428
>gi|423347397|ref|ZP_17325084.1| rne/Rng family ribonuclease [Parabacteroides merdae CL03T12C32]
gi|409217856|gb|EKN10830.1| rne/Rng family ribonuclease [Parabacteroides merdae CL03T12C32]
Length = 526
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 200/329 (60%), Gaps = 14/329 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+ KE + TKGP LT+ R+ +LI D++ VS KI + ER RL+ + +
Sbjct: 122 GQEVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERARLRQLIQ 181
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK-NIMEHAKSAALAADEGVEGAVPIL 411
+++P+ F + +RT + G + EL +L+ LL W+ NI + K A P L
Sbjct: 182 SIKPKNFSVIVRTSSEGKRVAELDHELKTLLKRWEENIPKITKVKA-----------PAL 230
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
++ + +++++D FN + + V+ YH + Y+ IAP + V+ Y +P+FD
Sbjct: 231 IYEETARAVALLRDIFNPSFQNIYVNDADIYHNIRDYVSLIAPGREEIVQRYTGELPIFD 290
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F I ++I ++ + V +G L+IE TEA+ IDVN G+ G ++EK +DVN A
Sbjct: 291 NFAITKQIKSLFGRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKG-SDAQEKTAIDVNTA 349
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GGIIVVDFIDMA+ +N++ ++E + KA+ DR+ + LS+ GLM
Sbjct: 350 AADEIARQLRLRDMGGIIVVDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLM 409
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVE 620
+ITR+RVRP++ SE C C GTG ++
Sbjct: 410 QITRQRVRPAMDVDTSEACPTCFGTGTIK 438
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IAVLED+ LVEL E + +YLG V KL+P + AF+++G + + + HY +
Sbjct: 16 IAVLEDKNLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDVGYKKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK 161
+ P F + K
Sbjct: 73 --LGPNFNTQQK 82
>gi|291515894|emb|CBK65104.1| ribonuclease, Rne/Rng family [Alistipes shahii WAL 8301]
Length = 501
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 135/360 (37%), Positives = 211/360 (58%), Gaps = 17/360 (4%)
Query: 283 PGEKT-----WLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSR 337
P EKT +LQV G +++VQV KE + TKGP LTA L R +L+ ++ +S+
Sbjct: 87 PVEKTGKIGEYLQV--GQQIMVQVAKEAISTKGPRLTADISLAGRNVVLVPFTSKVFLSQ 144
Query: 338 KITGV-ERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSA 396
KI E+ RLK IA + P+ FG+ IRT A E+++ D++ + W+ K
Sbjct: 145 KIRSADEKKRLKRIAAAVLPKNFGVIIRTAAMEAKDEDIEHDIQTQIDRWRKTCAAIKKN 204
Query: 397 ALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDL 456
A +A P L M + +I++D N ++ VD Y+E+ Y++ I P+
Sbjct: 205 AASA--------PAQLMSEMNRANTIIRDSLNGSFSQIAVDDEAMYNEIRGYIRQIEPEK 256
Query: 457 CDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFG 516
V+LY +P+FD F+I ++I ++ +K V L G L+IE+TEA+ IDVN G+
Sbjct: 257 EKIVKLYKGNVPIFDNFDISKQIKSLFAKYVSLKRGAYLIIERTEAMNVIDVNSGNRTKA 316
Query: 517 HGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
++E+ +DVNLAAAK+IAR+LRLRD+GGI+++DFID+ NK+ +++E+ K + D
Sbjct: 317 E-DNQEQTAMDVNLAAAKEIARQLRLRDLGGIVIIDFIDLHKAQNKQALFDEMVKLMATD 375
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
++ V L++ GLM+ITR+RVRP +S+ C C G+G++E KIE +IS L
Sbjct: 376 KAKHTVLPLTKFGLMQITRQRVRPVAVESVSDVCPTCNGSGKIEPTVLLDKKIENQISFL 435
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 94 EDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
ED+ LVEL E ++ +YLG V K++P + AFVNIG+ + + + HY
Sbjct: 3 EDKVLVELNKEQCQTGFAVGDIYLGKVRKIMPGLNAAFVNIGHEKDAFI---HY 53
>gi|407792847|ref|ZP_11139883.1| RNase E [Idiomarina xiamenensis 10-D-4]
gi|407217105|gb|EKE86941.1| RNase E [Idiomarina xiamenensis 10-D-4]
Length = 712
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 229/424 (54%), Gaps = 40/424 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFP----SKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQ 292
EA F D+ E +GF P ++S PD + KD V+
Sbjct: 51 EAAFVDY-------GAERHGFLPLKEIARSYFPDGYTFNGRPNIKDV-----------VK 92
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VI 350
+G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ER+ LK +
Sbjct: 93 EGQQVIVQIDKEERGQKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERSDLKDAL 152
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
A+ PE GL +RT G S+EEL DL LL+ W+ I++ AADE P
Sbjct: 153 AQLNLPEEMGLIVRTAGVGKSVEELAWDLNVLLNHWQTIVK-------AADER---PAPF 202
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+H+ ++DY + ++++D + + +V ++ I PD +++ Y+ +PLF
Sbjct: 203 LIHQESNVIFRAIRDYLRRDIGEILIDHSQVFEQVKEHVSLIRPDFVSKIKRYEGDVPLF 262
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL
Sbjct: 263 SHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSKAT--KGGDIEETALQTNL 320
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++IAR+LRLRD+GG+IV+DFIDM ++R V ++ +++DR+ ++VS +SR GL
Sbjct: 321 EAAEEIARQLRLRDVGGLIVIDFIDMTPTRHQREVENRLRDCLQQDRARIQVSRISRFGL 380
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFI 650
+E++R+R+RPS+ + C C G G + + E+ + I RL+ ++ +T
Sbjct: 381 LEMSRQRLRPSLGEAANHVCPRCSGQGTIRSSES----LALSILRLIEEEALKDNTAQVQ 436
Query: 651 RHIP 654
+P
Sbjct: 437 AQVP 440
>gi|449144543|ref|ZP_21775358.1| ribonuclease E [Vibrio mimicus CAIM 602]
gi|449080044|gb|EMB50963.1| ribonuclease E [Vibrio mimicus CAIM 602]
Length = 1034
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 211/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|262404384|ref|ZP_06080939.1| ribonuclease E [Vibrio sp. RC586]
gi|262349416|gb|EEY98554.1| ribonuclease E [Vibrio sp. RC586]
Length = 1024
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 209/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCTGTG 407
>gi|403736772|ref|ZP_10949733.1| putative ribonuclease [Austwickia chelonae NBRC 105200]
gi|403192867|dbj|GAB76503.1| putative ribonuclease [Austwickia chelonae NBRC 105200]
Length = 1045
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 128/324 (39%), Positives = 192/324 (59%), Gaps = 11/324 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ERTRLK I K
Sbjct: 506 GQGVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPQGKMTGISRKLPDTERTRLKKILKE 565
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P G+ +RT A G S EL+ D+E L + W++I + A S G P LLH
Sbjct: 566 IVPPDAGVIVRTAAEGASESELRADVERLANIWESIQKKAAS----------GHAPALLH 615
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ T+ +++D FNE MVV + V Y+ +APDL ++ + +F +F
Sbjct: 616 GEVDLTVRVIRDVFNEDFSSMVVSGEGAWSTVNDYIGSVAPDLAGKLRRWTGDKDVFAEF 675
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I+E++ + ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + N+ AA
Sbjct: 676 RIDEQLAKAMDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FVGAGGNLEETVTKNNIEAA 734
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 735 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVVRRLLECLGRDRTKHQVAEVTSLGLVQM 794
Query: 594 TRKRVRPSVTFMISEPCTCCQGTG 617
TRKRV + + SEPC C G G
Sbjct: 795 TRKRVGAGLIEVFSEPCEHCNGRG 818
>gi|238060599|ref|ZP_04605308.1| ribonuclease Rne/Rng [Micromonospora sp. ATCC 39149]
gi|237882410|gb|EEP71238.1| ribonuclease Rne/Rng [Micromonospora sp. ATCC 39149]
Length = 1086
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 203/329 (61%), Gaps = 11/329 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + + G+SRK+ ER RL+ +
Sbjct: 625 LRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPNGNASGISRKLPDTERKRLRDV 684
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L P+G G+ +RT A G S +EL +D++ L + W++I AK A+ G P+
Sbjct: 685 LKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDI--QAKVAS--------GGAPV 734
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +V+D FNE +++V++ +Y V SYL ++PDL DRV + +F
Sbjct: 735 LLYEEPDLVIRVVRDLFNEDFRELVIEGDESYGMVESYLSHVSPDLVDRVRRHVGTSDVF 794
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E+I L ++V LP+GG LVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 795 ATYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGK-YTGAGGNLEETVTRNNL 853
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 854 EAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 913
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+++TRKR+ + SE C CC+G G V
Sbjct: 914 VQMTRKRIGAGLLEAFSETCDCCKGRGVV 942
Score = 45.8 bits (107), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR IAVLED LVE + S +VYLG V
Sbjct: 522 ILSESEFLARREAVDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQ 581
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 582 NVLPSMEAAFVDIGRGRNAVL 602
>gi|303237107|ref|ZP_07323677.1| S1 RNA binding domain protein [Prevotella disiens FB035-09AN]
gi|302482494|gb|EFL45519.1| S1 RNA binding domain protein [Prevotella disiens FB035-09AN]
Length = 523
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 141/431 (32%), Positives = 239/431 (55%), Gaps = 22/431 (5%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + N F +V D P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSFAKYLKQVQSDRKRLFPLQKAS 101
Query: 279 SKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVS 336
+ + +Q ++ G +V+VQVVKE + TKGP LT R+ +LI D++ VS
Sbjct: 102 KLPILQKDSSIQNILEVGQEVMVQVVKEPISTKGPRLTGEISFAGRYLVLIPFGDKVNVS 161
Query: 337 RKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKS 395
KI +G ER RLK + ++++P+ FG+ +RTVA G + EL +++ L + W + +
Sbjct: 162 TKIKSGEERARLKQLIQSIRPKNFGVIVRTVAEGKRVAELDAEMKVLFNRWNEAITKVQK 221
Query: 396 AALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPD 455
P L+ G+ + +++D FN + + V+ V SY+ IAP+
Sbjct: 222 TQ---------ERPQLIFEETGRAVGMLRDLFNPTYENIYVNDEEICTAVKSYVSLIAPE 272
Query: 456 LCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMF 515
D V+ Y+ ++P+FD F++ ++I + K + +G +++E TEA+ +DVN G+
Sbjct: 273 KADIVKKYNGKLPIFDNFDVTKQIKSSFGKTINYGHGCYIIVEHTEAMHVVDVNSGNRTK 332
Query: 516 GHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVER 575
G +E+ LD NL AA +IAR+LRLRD+GGIIVVDFIDM +++++YE + KA+++
Sbjct: 333 EKG--QEQNALDTNLGAADEIARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERMCKAMQK 390
Query: 576 DRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEA--LETSF--SKIEQ 631
DR+ + LS+ GLM+ITR+RVRP + ++E C C G+G++ + L T KI+Q
Sbjct: 391 DRARHNILPLSKFGLMQITRQRVRPVMDVDVAEECPTCFGSGKIRSSLLFTDLLERKIDQ 450
Query: 632 EISRLLVSKSY 642
+++ ++K Y
Sbjct: 451 LTNKIGINKFY 461
Score = 47.4 bits (111), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP +N ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQREPRDANFSVGNIYIAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|430761115|ref|YP_007216972.1| Ribonuclease E [Thioalkalivibrio nitratireducens DSM 14787]
gi|430010739|gb|AGA33491.1| Ribonuclease E [Thioalkalivibrio nitratireducens DSM 14787]
Length = 1049
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 214/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
+++G +++VQV KE GTKG LT Y L R+ +L+ + R G VSR+I G +R L+
Sbjct: 92 LKEGLQLLVQVEKEERGTKGAALTTYVSLAGRYLVLMPNNPRAGGVSRRIEGDDRAELRE 151
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+A+ PEG G+ RT G + EELQ DL+ + + W I++ + E
Sbjct: 152 ALAELNIPEGMGVIARTAGVGRTPEELQWDLDYMTALWSAILQAS----------TEADA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++D+ V ++++D Y + +++ + P+ +++LY +P
Sbjct: 202 PALIHQESNVIIRALRDHMRNDVGEVIIDDEMVYRQALEFVERVMPNSLRKIKLYSDPVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF++F +E +I + + V LP+GG+LVI+ TEAL+SIDVN G E+ L
Sbjct: 262 LFNRFQVESQIESAFERLVALPSGGALVIDHTEALISIDVNSARAT--KGGDIEETALTT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++ AR+LR+RD+GG+IV+DFIDM + ++R V ++KA+E DR+ V+V +SR
Sbjct: 320 NLEAAEEAARQLRIRDLGGLIVIDFIDMTSNKHQREVETRLRKALEMDRARVQVGRISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+R S+ C CQG G++ ++E+ + I RL+ ++ + T
Sbjct: 380 GLLEMSRQRLRSSLGESSHITCPRCQGHGQIRSVES----LALSILRLIEEEAMKERTSL 435
Query: 649 FIRHIP 654
+ +P
Sbjct: 436 VLAKVP 441
>gi|381157161|ref|ZP_09866395.1| ribonuclease, Rne/Rng family [Thiorhodovibrio sp. 970]
gi|380881024|gb|EIC23114.1| ribonuclease, Rne/Rng family [Thiorhodovibrio sp. 970]
Length = 1016
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 128/376 (34%), Positives = 215/376 (57%), Gaps = 20/376 (5%)
Query: 283 PGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKI 339
PG K ++ +++G +V+VQ+ KE G KG LT + L R+ +L+ + R G VSR+I
Sbjct: 85 PGTKNNIRELIREGQEVVVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRI 144
Query: 340 TGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAAL 398
G +R+ L+ + L PE GL +RT G + EELQ DL+ L W I ++
Sbjct: 145 EGADRSELREVLSQLDIPEDTGLIVRTAGVGKNTEELQWDLDYLKQLWDAIKTSSE---- 200
Query: 399 AADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCD 458
E P L+++ + ++D+ + ++VVD P+ Y + ++++ + P
Sbjct: 201 ------ERKAPFLIYQESDVIIRSIRDHLRADIGEIVVDDPKMYEKAQAFVRSVMPHNLK 254
Query: 459 RVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHG 518
++ LYD +PLF ++ IE +I + + V LP+GG+LVI+ EAL SID+N G
Sbjct: 255 KLRLYDDEVPLFTRYQIESQIESAFQREVRLPSGGALVIDHGEALTSIDINSARAT--KG 312
Query: 519 SSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRS 578
+ E+ L+ NL AA +IAR+LRLRD+GG+ V+DFIDM N+R V ++ A+++DR+
Sbjct: 313 ADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMTPAKNQRDVENRLRDALKQDRA 372
Query: 579 MVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLV 638
V+ S +SR GL+E++R+R+RPS+ C C+G G + +E+ + + R++
Sbjct: 373 RVQTSRISRFGLLEMSRQRLRPSLGESSQIVCPRCKGQGTIRGVES----LALSVLRIVE 428
Query: 639 SKSYNQSTFYFIRHIP 654
++ ST + H+P
Sbjct: 429 EEAMKDSTARILAHLP 444
Score = 40.8 bits (94), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L L +E + ++Y G++T++ P++ AFV+ G+
Sbjct: 4 MLINATQPEELRVAIVDGQQLFNLDIESPGREQKKANIYKGIITRVEPSLEAAFVDYGSE 63
Query: 138 RPSLMDIKH 146
R + +K
Sbjct: 64 RHGFLPLKE 72
>gi|325270176|ref|ZP_08136783.1| ribonuclease G [Prevotella multiformis DSM 16608]
gi|324987477|gb|EGC19453.1| ribonuclease G [Prevotella multiformis DSM 16608]
Length = 523
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 151/459 (32%), Positives = 246/459 (53%), Gaps = 34/459 (7%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP----Q 274
V +++ +N +D G F +L+ L G+ N + +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGGQFNSYAKYLKQVQSDRKRLYPIQKAS 101
Query: 275 GTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
D + + LQV G +V+VQ+VKE + TKGP LT RF +LI ++
Sbjct: 102 RLPDLQKDGTVQNTLQV--GQEVMVQIVKEPISTKGPRLTGEISFAGRFLVLIPFGHKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI +G ER RLK + +++ P+ FG+ +RTVA G + EL +++ LL+ W ++
Sbjct: 160 VSSKIRSGEERARLKQLIQSITPKNFGVIVRTVAEGKRVAELDAEMKVLLNRWNEAIQRV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ P L+ G+ +++++D FN + + V+ V Y+ IA
Sbjct: 220 QKTQ---------ERPQLIFEETGRAVAMLRDLFNPTYENIYVNDEEICTAVRHYVSLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P+ V+ Y ++P+FD F++ ++I + K V +G L+IE TEA+ +DVN G+
Sbjct: 271 PEKAGIVKRYTGKVPIFDNFDVTKQIKSSFGKTVNYGHGCYLIIEHTEAMHVVDVNSGN- 329
Query: 514 MFGHGSSKEKA----ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEV 569
+KEKA LD NL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE +
Sbjct: 330 -----RTKEKAQEQNALDTNLGAADELARQLRLRDMGGIIVVDFIDMNLAEDRQMLYERM 384
Query: 570 KKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
K +++DR+ + LS+ GLM+ITR+RVRP++ + E C C GTG++ + ++
Sbjct: 385 CKNMQKDRARHNILPLSKFGLMQITRQRVRPAMDVDVDENCPTCFGTGKIRSSILFTDQL 444
Query: 630 EQEISRLL----VSKSYNQSTFYFIRHIPKRRKHLKLEY 664
E++I RL+ V K Y Y +I K LK ++
Sbjct: 445 ERKIDRLVNKVGVRKFYLHVHPYVAAYINKGLVSLKRKW 483
Score = 45.8 bits (107), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED++LVE EP +++ ++Y+ V KL+P + FV++G R + + HY
Sbjct: 16 IALLEDKRLVEYQREPREASFSVGNIYVAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|424613842|ref|ZP_18052630.1| ribonuclease E, partial [Vibrio cholerae HC-41A1]
gi|408012687|gb|EKG50459.1| ribonuclease E, partial [Vibrio cholerae HC-41A1]
Length = 772
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|408501670|ref|YP_006865589.1| ribonuclease G [Bifidobacterium asteroides PRL2011]
gi|408466494|gb|AFU72023.1| ribonuclease G [Bifidobacterium asteroides PRL2011]
Length = 889
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 198/333 (59%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK+ ER+RLK
Sbjct: 485 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLPDRERSRLK 544
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E L KDLE L W I + K E + G
Sbjct: 545 SIVSRVAPKDMGVIIRTAAEGASEEALTKDLENLQRQWSKIEDKRK-------EFLHGKR 597
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K+VV Y V +YL+ +APDL +++E +D
Sbjct: 598 PKLLQGEPDVAIRVVRDIFNDDFAKLVVQGEGVYERVRNYLETMAPDLEEKLEHWDPAEH 657
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FD+++I+ ++ + ++V LP+GGSLVI++TEA+ +IDVN G G G S E+
Sbjct: 658 QGKDVFDRWSIDSQLRKGMERQVYLPSGGSLVIDRTEAMTTIDVNTGR-FIGKGKSLEET 716
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG+I++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 717 VTRCNLEASEEIARQLRLRDIGGMIMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 776
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C G G
Sbjct: 777 VTSLGLVQMTRKRVGQGLVEAFSEECPTCHGRG 809
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T I+V+ED+ LVE + ++ ++YL
Sbjct: 382 QSQLVEQDFLARRENVNRLMVVREKEHHTQ--ISVIEDDILVEHYVSDIQEVSTVGNIYL 439
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 440 GRVQNVLPSMEAAFVDIGQARNGVL 464
>gi|115351040|ref|YP_772879.1| ribonuclease [Burkholderia ambifaria AMMD]
gi|115281028|gb|ABI86545.1| RNAse E [Burkholderia ambifaria AMMD]
Length = 1068
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 224/409 (54%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGIDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.4 bits (98), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|419837754|ref|ZP_14361192.1| ribonuclease E [Vibrio cholerae HC-46B1]
gi|421344543|ref|ZP_15794946.1| ribonuclease E [Vibrio cholerae HC-43B1]
gi|422910880|ref|ZP_16945508.1| ribonuclease E [Vibrio cholerae HE-09]
gi|423735708|ref|ZP_17708904.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-41B1]
gi|424010046|ref|ZP_17752982.1| ribonuclease E [Vibrio cholerae HC-44C1]
gi|341632754|gb|EGS57611.1| ribonuclease E [Vibrio cholerae HE-09]
gi|395940623|gb|EJH51304.1| ribonuclease E [Vibrio cholerae HC-43B1]
gi|408629566|gb|EKL02247.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-41B1]
gi|408856302|gb|EKL95997.1| ribonuclease E [Vibrio cholerae HC-46B1]
gi|408863574|gb|EKM03051.1| ribonuclease E [Vibrio cholerae HC-44C1]
Length = 1049
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|417825280|ref|ZP_12471868.1| ribonuclease E [Vibrio cholerae HE48]
gi|340046765|gb|EGR07695.1| ribonuclease E [Vibrio cholerae HE48]
Length = 1049
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|424591694|ref|ZP_18031120.1| ribonuclease E [Vibrio cholerae CP1037(10)]
gi|408030995|gb|EKG67638.1| ribonuclease E [Vibrio cholerae CP1037(10)]
Length = 1049
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|405980383|ref|ZP_11038722.1| rne/Rng family ribonuclease [Actinomyces turicensis ACS-279-V-Col4]
gi|404390376|gb|EJZ85445.1| rne/Rng family ribonuclease [Actinomyces turicensis ACS-279-V-Col4]
Length = 914
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 199/327 (60%), Gaps = 10/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ +LI + +G+SRK+ ERTRLK I
Sbjct: 294 LKSGDPVLVQVTKDPIGHKGARLTSQITLAGRYLVLIPNGSMMGISRKLPDRERTRLKKI 353
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G G+ +RT A G + E+++ D+ L + W +I E K+ A P
Sbjct: 354 LKQVVPTGSGVIVRTAAEGATEEQIRDDVARLSAQWASIEEQQKNTKTA---------PT 404
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL + +V+D FNE K+V++ T+ V SY+ +++P+L DRVE + +F
Sbjct: 405 LLRGEPELAVRVVRDIFNEDFSKLVIEGNETFETVKSYVDELSPELSDRVEKWVGTDNVF 464
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
I+E+++ + ++V LP+GG+L+I++TEA+ IDVN G G G + E+ + NL
Sbjct: 465 AAHRIDEQLSKGMDRKVWLPSGGTLIIDRTEAMTVIDVNTGK-FIGAGGTLEETVTHNNL 523
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGII+VDF+DM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 524 EAAEEIVRQLRLRDIGGIIIVDFVDMVLESNRDLVLRRLVECLGRDRTRHQVTEITSLGL 583
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + S PC C+G G
Sbjct: 584 VQMTRKRVGEGLVEAFSTPCEACEGRG 610
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ +IA+LED+ LVE + ++YLG V ++P+M AFV+IG R +++
Sbjct: 216 LDQIAILEDDLLVEHYVARRTQKSMVGNIYLGRVQNVLPSMEAAFVDIGRGRNAVL 271
>gi|417821375|ref|ZP_12467989.1| ribonuclease E [Vibrio cholerae HE39]
gi|423956539|ref|ZP_17735093.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae HE-40]
gi|423985327|ref|ZP_17738644.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae HE-46]
gi|340039006|gb|EGQ99980.1| ribonuclease E [Vibrio cholerae HE39]
gi|408657455|gb|EKL28535.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae HE-40]
gi|408663931|gb|EKL34776.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae HE-46]
Length = 1049
Score = 234 bits (598), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|421741457|ref|ZP_16179652.1| ribonuclease, Rne/Rng family, partial [Streptomyces sp. SM8]
gi|406690132|gb|EKC93958.1| ribonuclease, Rne/Rng family, partial [Streptomyces sp. SM8]
Length = 856
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 195/327 (59%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 460 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKGI 519
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L W+ I + A ++ ++ P
Sbjct: 520 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLHGQWQEIQKKANASNASS--------PS 571
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + V Y+ +APDL DR++ + +F
Sbjct: 572 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTVHGYVSKVAPDLVDRLQRWTSETDVF 631
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E + L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 632 ATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 690
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 691 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 750
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 751 VQMTRKRVGQGLLESFSETCVHCNGRG 777
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED+ LVE + ++ +VYLG V ++P+
Sbjct: 363 FLARREAVERVMVVRQSGERTQ-IGVLEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 421
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 422 MEAAFIDIGKGRNAVL 437
>gi|315504188|ref|YP_004083075.1| Rne/Rng family ribonuclease [Micromonospora sp. L5]
gi|315410807|gb|ADU08924.1| ribonuclease, Rne/Rng family [Micromonospora sp. L5]
Length = 1089
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 200/327 (61%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + + G+SRK+ ER RL+ +
Sbjct: 622 LRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPNGNASGISRKLPDTERKRLRDV 681
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L P+G G+ +RT A G S +EL +D++ L + W++I A EG P+
Sbjct: 682 LKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQAKA----------TEGGAPV 731
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +V+D FNE +++V++ Y V SYL ++PDL R+ + +F
Sbjct: 732 LLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLVESYLSHVSPDLVARLRRHAGVADVF 791
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ I+E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 792 AEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVVDVNTGK-YTGSGGNLEETVTRNNL 850
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 851 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 910
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKR+ + SE C CC+G G
Sbjct: 911 VQMTRKRIGAGLLEAFSETCECCKGRG 937
Score = 45.8 bits (107), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR IAVLED LVE + S +VYLG V
Sbjct: 519 ILSESEFLARREAVDRVMVVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQ 578
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 579 NVLPSMEAAFVDIGRGRNAVL 599
>gi|258621207|ref|ZP_05716241.1| ribonuclease E [Vibrio mimicus VM573]
gi|258586595|gb|EEW11310.1| ribonuclease E [Vibrio mimicus VM573]
Length = 819
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 211/383 (55%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA+
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAE 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|229513686|ref|ZP_04403148.1| ribonuclease E [Vibrio cholerae TMA 21]
gi|229348867|gb|EEO13824.1| ribonuclease E [Vibrio cholerae TMA 21]
Length = 1052
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|261209962|ref|ZP_05924261.1| ribonuclease E [Vibrio sp. RC341]
gi|260840908|gb|EEX67445.1| ribonuclease E [Vibrio sp. RC341]
Length = 1030
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 209/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWGAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ YD +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSTSIYERALEHIRLVRPDFVNRVKKYDGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCTGTG 407
>gi|170700218|ref|ZP_02891234.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10]
gi|170134851|gb|EDT03163.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria IOP40-10]
Length = 1051
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 224/409 (54%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGIDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|254286848|ref|ZP_04961801.1| ribonuclease E [Vibrio cholerae AM-19226]
gi|150423139|gb|EDN15087.1| ribonuclease E [Vibrio cholerae AM-19226]
Length = 1051
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|302869337|ref|YP_003837974.1| Rne/Rng family ribonuclease [Micromonospora aurantiaca ATCC 27029]
gi|302572196|gb|ADL48398.1| ribonuclease, Rne/Rng family [Micromonospora aurantiaca ATCC 27029]
Length = 1092
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 200/327 (61%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT++ L R + + + + G+SRK+ ER RL+ +
Sbjct: 625 LRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPNGNASGISRKLPDTERKRLRDV 684
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K L P+G G+ +RT A G S +EL +D++ L + W++I A EG P+
Sbjct: 685 LKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQAKA----------TEGGAPV 734
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +V+D FNE +++V++ Y V SYL ++PDL R+ + +F
Sbjct: 735 LLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLVESYLSHVSPDLVARLRRHAGVADVF 794
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ I+E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 795 AEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVVDVNTGK-YTGSGGNLEETVTRNNL 853
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 854 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGL 913
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKR+ + SE C CC+G G
Sbjct: 914 VQMTRKRIGAGLLEAFSETCECCKGRG 940
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR IAVLED LVE + S +VYLG V
Sbjct: 522 ILSESEFLARREAVDRVMVVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQ 581
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV+IG R +++
Sbjct: 582 NVLPSMEAAFVDIGRGRNAVL 602
>gi|271968506|ref|YP_003342702.1| ribonuclease E [Streptosporangium roseum DSM 43021]
gi|270511681|gb|ACZ89959.1| Ribonuclease E [Streptosporangium roseum DSM 43021]
Length = 922
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 194/329 (58%), Gaps = 11/329 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
+ ++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ERTRLK
Sbjct: 523 VALKSGQSVLVQVTKDPIGHKGARLTSQISLPGRYLVYVPDGSMTGISRKLPDKERTRLK 582
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K + PE G+ +RT A G S EEL +D+ L + W+NI AKSA+
Sbjct: 583 SILKKVMPENAGVIVRTAAEGASEEELGRDVARLSAQWENIQRKAKSAS----------A 632
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LL T+ +V+D FNE +VV + V Y++ +AP L DR+ ++
Sbjct: 633 PELLSSEPDLTVRVVRDVFNEDFTSLVVAGDDVWETVDEYVRYVAPHLADRLSRWEDGAD 692
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F + I+E+I + ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 693 VFAAYRIDEQIAKAMERKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGQGGNLEETVTRN 751
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRDIGGIIV+DFIDM ++N+ LV + + + RDR+ +V+E++
Sbjct: 752 NLEAAEEIVRQLRLRDIGGIIVIDFIDMVLENNRDLVLRRLLECLARDRTKHQVAEVTSL 811
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTG 617
GL+++TRKRV + S C CC G G
Sbjct: 812 GLVQMTRKRVGQGLLEAFSTVCECCNGRG 840
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q IAV+ED LVE + S +VYLG V ++P+
Sbjct: 428 FLARRESVERVMVVRRTGGRTQ-IAVMEDGVLVEHYVNREASQSYVGNVYLGKVQNVLPS 486
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 487 MEAAFVDIGKGRNAVL 502
>gi|153216572|ref|ZP_01950523.1| ribonuclease E [Vibrio cholerae 1587]
gi|124114201|gb|EAY33021.1| ribonuclease E [Vibrio cholerae 1587]
Length = 1052
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|424607209|ref|ZP_18046151.1| ribonuclease E, partial [Vibrio cholerae CP1050(23)]
gi|408042907|gb|EKG78937.1| ribonuclease E, partial [Vibrio cholerae CP1050(23)]
Length = 790
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|49475635|ref|YP_033676.1| ribonuclease E [Bartonella henselae str. Houston-1]
gi|49238442|emb|CAF27670.1| Ribonuclease E [Bartonella henselae str. Houston-1]
Length = 880
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 172/560 (30%), Positives = 274/560 (48%), Gaps = 62/560 (11%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A LEE E A
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPLADRL----------ALLEEE-------------EKAA 97
Query: 194 EADSQDDLVQFEHNDDEEHD-------GDDFDVSEVLKNV--NGSIIDDGEPEADFEDFL 244
+S D++ E N +++ + ++V+ N+ + IDD E E F
Sbjct: 98 VGESHIDVLIEETNKNKKRSRKTKKDKKNSTMAADVVNNITFDAITIDDAE-----EAFD 152
Query: 245 EGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKE 304
H D E G + E+P T K K +++ ++VQV+KE
Sbjct: 153 ANVSHDDIEMVGAEDVREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKE 202
Query: 305 GLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGL 361
G KG LT Y L R+ +L+ + R G +SRKIT + R RLK I K L P+G G+
Sbjct: 203 ERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAQDRKRLKEIVKELAVPKGMGV 262
Query: 362 TIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLS 421
+RT A + E+++D E L W + ++ L + P L+H
Sbjct: 263 ILRTAGANRTKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLVHEESNLIKR 312
Query: 422 IVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINN 481
++D +N+ + +++V + Y E +++ + P V+ Y IP+F + NIE +++
Sbjct: 313 SIRDLYNKNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDK 372
Query: 482 MLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELR 541
ML +V L +GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LR
Sbjct: 373 MLHPQVSLKSGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLR 430
Query: 542 LRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPS 601
LRD+ G+IV+DFIDM ++ N R+V +++K ++ DR+ ++V +S GL+E++R+R+R S
Sbjct: 431 LRDLAGLIVIDFIDMLEERNVRMVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQRIRIS 490
Query: 602 VTFMISEPCTCCQGTGRVEA 621
V + PC C GTG V +
Sbjct: 491 VLESTTHPCPHCSGTGNVRS 510
>gi|257454041|ref|ZP_05619315.1| ribonuclease E [Enhydrobacter aerosaccus SK60]
gi|257448519|gb|EEV23488.1| ribonuclease E [Enhydrobacter aerosaccus SK60]
Length = 1266
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 133/380 (35%), Positives = 217/380 (57%), Gaps = 23/380 (6%)
Query: 256 GFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTA 315
GF P + E+ + P+ T + K +++G ++IVQV KE G KG L+
Sbjct: 66 GFLPIR-EIAPEYLAGDPRSTTNIKQL--------IKEGDELIVQVEKEERGNKGAALST 116
Query: 316 YPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLE 373
L R+ +L+ + R G +SR+I+G R +K L+ P+G + IRT G + +
Sbjct: 117 LISLAGRYLVLMPNNARGGGISRQISGKLRDEMKQALSELRLPKGMSVIIRTAGIGKTTD 176
Query: 374 ELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKK 433
ELQ+DL+ LL+ WK I + ++ + P LLH+ G V+DY + + +
Sbjct: 177 ELQQDLDHLLNIWKGIQQQSQ----------KFPSPRLLHQEAGVVTRAVRDYLRDDITE 226
Query: 434 MVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGG 493
+ VD+ Y+E ++++ + P +++ Y P+F +F IE++I + V LP+GG
Sbjct: 227 IWVDNEYAYNEAANFIEAVMPQQANKLRKYTDYEPMFARFGIEKQIETAYQREVRLPSGG 286
Query: 494 SLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDF 553
S+VI+QTEALVSID+N G S+ + NL AA +IAR+LRLRD+GG+IV+DF
Sbjct: 287 SIVIDQTEALVSIDINSSKATKGADVSE--TAFNTNLEAADEIARQLRLRDMGGLIVIDF 344
Query: 554 IDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCC 613
IDMA D +++ V +K+A + DR+ ++ +E+SR GL+E++R+R+RPS+ C C
Sbjct: 345 IDMATDDHQKQVENRLKEATKNDRARIQFAEISRFGLLEMSRQRLRPSLEEATGYLCPRC 404
Query: 614 QGTGRVEALETSFSKIEQEI 633
GTG + L + I ++I
Sbjct: 405 HGTGMIRDLRSLALSIMRQI 424
>gi|229820110|ref|YP_002881636.1| ribonuclease, Rne/Rng family [Beutenbergia cavernae DSM 12333]
gi|229566023|gb|ACQ79874.1| ribonuclease, Rne/Rng family [Beutenbergia cavernae DSM 12333]
Length = 944
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 127/329 (38%), Positives = 192/329 (58%), Gaps = 1/329 (0%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
+ G V+VQV K+ +G KG LT+ L R+ +L+ S G+SRK+ ER RLK +
Sbjct: 462 LSSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVLVPSGAMTGISRKLPDTERARLKKL 521
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P+G G+ +RT A G S +EL++D+E L W +I + + + P
Sbjct: 522 LKEIVPDGQGVIVRTAAEGASEDELRRDVERLTKQWADIQTKVNGSGGTGRKPQKVTAPA 581
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL L +V+D FNE + V +H ++ YL +APDL R+ + +F
Sbjct: 582 LLKGEPELALRVVRDVFNEDFSSLTVSGDEAWHTISDYLTTVAPDLAQRLTHWTDDADVF 641
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+F I+E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL
Sbjct: 642 ARFRIDEQLAKGLDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGTLEETVTRNNL 700
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 701 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTRHQVAEVTSLGL 760
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+++TRKRV + SE C C G G V
Sbjct: 761 VQMTRKRVGQGLVEAFSETCEHCHGRGFV 789
Score = 43.1 bits (100), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 66 SLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVV 120
++I++ F++ + ++ +R IAVLED LVE + + + +VYLG V
Sbjct: 358 TIITEAEFLARREAVERAMVVRERDGRTQIAVLEDGVLVEHYVARKQQSSMVGNVYLGRV 417
Query: 121 TKLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV++G R +++
Sbjct: 418 QNVLPSMEAAFVDLGKGRNAVL 439
>gi|119717674|ref|YP_924639.1| ribonuclease G [Nocardioides sp. JS614]
gi|119538335|gb|ABL82952.1| RNAse G [Nocardioides sp. JS614]
Length = 1070
Score = 234 bits (598), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 132/331 (39%), Positives = 195/331 (58%), Gaps = 19/331 (5%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ERTRLK + K
Sbjct: 487 GQSVLVQVTKDPIGHKGARLTSQISLAGRFLVYVPDGTTSGISRKLPDTERTRLKALLKE 546
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
+ P+ G+ +RT A G S EEL +D+E L + W++I AK G+ P LL+
Sbjct: 547 IVPDSAGVIVRTAAEGASEEELTRDVERLKARWEDIEGKAK-----------GSAPQLLY 595
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDK-------R 466
TL +V+D F E K+V+ + V Y+ +APDL R+E YD +
Sbjct: 596 GEPDLTLKVVRDLFTEDFSKLVIQGEDAWDTVQGYVHHVAPDLEARLERYDPGADGAGGK 655
Query: 467 IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
+F ++ I+E+I L ++V LP+GGSL+I++TEA+ +DVN G G G + E+ +
Sbjct: 656 ADVFAEYRIDEQIAKGLDRKVWLPSGGSLIIDRTEAMTVVDVNTGK-FTGSGGNLEETVT 714
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++
Sbjct: 715 KNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLVECLGRDRTRHQVAEVT 774
Query: 587 RHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
GL+++TRKR+ + SE C CQG G
Sbjct: 775 SLGLVQMTRKRIGTGLLEAFSETCEHCQGRG 805
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
++S+ F++ ++ + QR I VLED LVE + +VYLG V
Sbjct: 380 IVSEAEFLARRESVDRVMVVRQREDLTQIGVLEDRVLVEHYVARESQTSLIGNVYLGRVQ 439
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AF++IG R +++
Sbjct: 440 NVLPSMEAAFIDIGKGRNAVL 460
>gi|384425011|ref|YP_005634369.1| Ribonuclease E [Vibrio cholerae LMA3984-4]
gi|327484564|gb|AEA78971.1| Ribonuclease E [Vibrio cholerae LMA3984-4]
Length = 1052
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|288921987|ref|ZP_06416196.1| ribonuclease, Rne/Rng family [Frankia sp. EUN1f]
gi|288346649|gb|EFC80969.1| ribonuclease, Rne/Rng family [Frankia sp. EUN1f]
Length = 1058
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 194/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 557 LKSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLVYVPDGQNAGISRKLPDTERARLKSI 616
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EL++D+E L++ W++I A+ A+ P
Sbjct: 617 LKKITPENGGVIVRTAAEGASEAELERDVERLVAQWEDIQRKAQKAS----------APS 666
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ + +++D FNE +++V V Y+ +APDL DRV Y +F
Sbjct: 667 LLYGEPDLVVRVIRDVFNEDFTELIVQGSTEAATVEEYVDTVAPDLRDRVRRYVGTGDVF 726
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++ ++E++ L ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL
Sbjct: 727 AEYRVDEQLAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FTGKGGNLEETVTKNNL 785
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 786 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGL 845
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SEPC C G G
Sbjct: 846 VQMTRKRVGQGLLEAYSEPCAHCSGRG 872
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+IAVLED LVE + S +VYLG V ++ +M AFV+IG R +++
Sbjct: 481 QIAVLEDGVLVEHFVTRASSTSYAGNVYLGRVQNVLASMEAAFVDIGKGRNAVL 534
>gi|153827553|ref|ZP_01980220.1| ribonuclease E, partial [Vibrio cholerae MZO-2]
gi|149738477|gb|EDM52873.1| ribonuclease E [Vibrio cholerae MZO-2]
Length = 957
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|429886538|ref|ZP_19368090.1| Ribonuclease E [Vibrio cholerae PS15]
gi|429226580|gb|EKY32685.1| Ribonuclease E [Vibrio cholerae PS15]
Length = 1049
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|15642032|ref|NP_231664.1| ribonuclease E [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121591522|ref|ZP_01678786.1| ribonuclease E [Vibrio cholerae 2740-80]
gi|121729886|ref|ZP_01682313.1| ribonuclease E [Vibrio cholerae V52]
gi|153823923|ref|ZP_01976590.1| ribonuclease E [Vibrio cholerae B33]
gi|227082157|ref|YP_002810708.1| ribonuclease E [Vibrio cholerae M66-2]
gi|229507881|ref|ZP_04397386.1| ribonuclease E [Vibrio cholerae BX 330286]
gi|229511884|ref|ZP_04401363.1| ribonuclease E [Vibrio cholerae B33]
gi|229519020|ref|ZP_04408463.1| ribonuclease E [Vibrio cholerae RC9]
gi|229607426|ref|YP_002878074.1| ribonuclease E [Vibrio cholerae MJ-1236]
gi|254849117|ref|ZP_05238467.1| ribonuclease E [Vibrio cholerae MO10]
gi|298497941|ref|ZP_07007748.1| ribonuclease E [Vibrio cholerae MAK 757]
gi|360035912|ref|YP_004937675.1| ribonuclease E [Vibrio cholerae O1 str. 2010EL-1786]
gi|379741855|ref|YP_005333824.1| ribonuclease E [Vibrio cholerae IEC224]
gi|417814068|ref|ZP_12460721.1| ribonuclease E [Vibrio cholerae HC-49A2]
gi|418350341|ref|ZP_12955072.1| ribonuclease E [Vibrio cholerae HC-43A1]
gi|418356143|ref|ZP_12958862.1| ribonuclease E [Vibrio cholerae HC-61A1]
gi|421325597|ref|ZP_15776121.1| ribonuclease E [Vibrio cholerae CP1041(14)]
gi|421329256|ref|ZP_15779766.1| ribonuclease E [Vibrio cholerae CP1042(15)]
gi|423165562|ref|ZP_17152289.1| ribonuclease E [Vibrio cholerae HC-48B2]
gi|424003019|ref|ZP_17746094.1| ribonuclease E [Vibrio cholerae HC-17A2]
gi|424645567|ref|ZP_18083303.1| ribonuclease E [Vibrio cholerae HC-56A2]
gi|443531965|ref|ZP_21097979.1| ribonuclease E [Vibrio cholerae HC-7A1]
gi|9656575|gb|AAF95178.1| ribonuclease E [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121546621|gb|EAX56812.1| ribonuclease E [Vibrio cholerae 2740-80]
gi|121628376|gb|EAX60877.1| ribonuclease E [Vibrio cholerae V52]
gi|126518555|gb|EAZ75778.1| ribonuclease E [Vibrio cholerae B33]
gi|227010045|gb|ACP06257.1| ribonuclease E [Vibrio cholerae M66-2]
gi|229343709|gb|EEO08684.1| ribonuclease E [Vibrio cholerae RC9]
gi|229351849|gb|EEO16790.1| ribonuclease E [Vibrio cholerae B33]
gi|229355386|gb|EEO20307.1| ribonuclease E [Vibrio cholerae BX 330286]
gi|229370081|gb|ACQ60504.1| ribonuclease E [Vibrio cholerae MJ-1236]
gi|254844822|gb|EET23236.1| ribonuclease E [Vibrio cholerae MO10]
gi|297542274|gb|EFH78324.1| ribonuclease E [Vibrio cholerae MAK 757]
gi|340036554|gb|EGQ97530.1| ribonuclease E [Vibrio cholerae HC-49A2]
gi|356444837|gb|EHH97646.1| ribonuclease E [Vibrio cholerae HC-43A1]
gi|356450706|gb|EHI03420.1| ribonuclease E [Vibrio cholerae HC-48B2]
gi|356452641|gb|EHI05320.1| ribonuclease E [Vibrio cholerae HC-61A1]
gi|356647066|gb|AET27121.1| ribonuclease E [Vibrio cholerae O1 str. 2010EL-1786]
gi|378795365|gb|AFC58836.1| ribonuclease E [Vibrio cholerae IEC224]
gi|395917435|gb|EJH28263.1| ribonuclease E [Vibrio cholerae CP1041(14)]
gi|395927790|gb|EJH38553.1| ribonuclease E [Vibrio cholerae CP1042(15)]
gi|395958636|gb|EJH69115.1| ribonuclease E [Vibrio cholerae HC-56A2]
gi|408846189|gb|EKL86301.1| ribonuclease E [Vibrio cholerae HC-17A2]
gi|443457355|gb|ELT24752.1| ribonuclease E [Vibrio cholerae HC-7A1]
Length = 1052
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|424611030|ref|ZP_18049869.1| ribonuclease E, partial [Vibrio cholerae HC-39A1]
gi|408007139|gb|EKG45246.1| ribonuclease E, partial [Vibrio cholerae HC-39A1]
Length = 795
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|350561201|ref|ZP_08930040.1| ribonuclease, Rne/Rng family [Thioalkalivibrio thiocyanoxidans ARh
4]
gi|349781308|gb|EGZ35616.1| ribonuclease, Rne/Rng family [Thioalkalivibrio thiocyanoxidans ARh
4]
Length = 1020
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/366 (34%), Positives = 214/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
+++G +++VQV KE GTKG LT Y L R+ +L+ + R G VSR+I G +R L+
Sbjct: 92 LKEGLELLVQVEKEERGTKGAALTTYVSLAGRYLVLMPNNPRAGGVSRRIEGEDRAELRE 151
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+A+ PEG G+ RT G + EELQ DL+ + + W I++ + E
Sbjct: 152 ALAELNIPEGMGVIARTAGVGRTAEELQWDLDYMTALWSAILQAS----------TEADA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++D+ V ++++D Y + +++ + P+ +++LY +P
Sbjct: 202 PALIHQESNVIIRALRDHMRNDVGEVIIDDDLVYRQALEFVERVMPNSLRKIKLYSDPVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ +E +I + + V LP+GG+LVI+ TEAL+SIDVN G E+ L+
Sbjct: 262 LFNRYQVESQIESAFERMVALPSGGALVIDHTEALISIDVNSARAT--KGGDIEETALNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++ AR+LR+RD+GG+IV+DFIDM + ++R V ++KA+E DR+ V+V +SR
Sbjct: 320 NLEAAEETARQLRIRDLGGLIVIDFIDMGSNKHQREVETRLRKALEMDRARVQVGRISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GL+E++R+R+R S+ C CQG G++ ++E+ + I RL+ ++ T
Sbjct: 380 GLLEMSRQRLRSSLGESSHITCPRCQGHGQIRSVES----LALSILRLIEEEAMKDRTSL 435
Query: 649 FIRHIP 654
+ +P
Sbjct: 436 VLAKVP 441
>gi|237808946|ref|YP_002893386.1| ribonuclease, Rne/Rng family [Tolumonas auensis DSM 9187]
gi|237501207|gb|ACQ93800.1| ribonuclease, Rne/Rng family [Tolumonas auensis DSM 9187]
Length = 950
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/423 (34%), Positives = 226/423 (53%), Gaps = 38/423 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKS---EVPDDSHTSHPQGTKDSKHTPGEKTWLQVQK 293
EA F D+ E +GF P K E +++T H G + K +++
Sbjct: 54 EAAFVDY-------GAERHGFLPLKEIAREYFPENYTFH--GRPNIKEV--------IKE 96
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 97 GLEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKEAMN 156
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L+ P G GL +RT G S EEL+ DL LL W N ++ A S A P L
Sbjct: 157 GLEVPSGMGLIVRTAGVGKSQEELEWDLNILLKHW-NAIKTASS---------NRAAPFL 206
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + ++++DS + +++ + PD +RV+LY IPLF
Sbjct: 207 IHQESNVIVRAIRDYLRRDIGEILIDSETIFERAKQHIELVRPDFVNRVKLYKSEIPLFT 266
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L NL
Sbjct: 267 HFQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSSRAT--KGGDIEETALQTNLE 324
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GG+IV+DFIDM ++R V ++ AV +DR+ +++ +SR GL+
Sbjct: 325 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRLRDAVRQDRARIQLGRISRFGLL 384
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIR 651
E++R+R+RPS+ + C C G G + E+ + I RL+ ++ +T I
Sbjct: 385 ELSRQRLRPSLNESSTHVCPRCSGQGFIRDNES----LALSILRLIEEEALKDNTEQVIA 440
Query: 652 HIP 654
+P
Sbjct: 441 QVP 443
>gi|134095278|ref|YP_001100353.1| RNase E [Herminiimonas arsenicoxydans]
gi|133739181|emb|CAL62230.1| Ribonuclease E (RNase E) [Herminiimonas arsenicoxydans]
Length = 973
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 201/341 (58%), Gaps = 14/341 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQV KE G KG LT++ L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQEIMVQVEKEERGNKGAALTSFVSLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G + RT G +++ELQ DL L+ W+ I E A G GA
Sbjct: 153 TMDKLDLPQGMSVIARTAGIGRNVDELQWDLNYLMQLWRAI-EGA---------GQSGAG 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ Y + ++ + PD+ RV+ Y +P
Sbjct: 203 AFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIYEQAQQFMSHVMPDMVHRVKRYRDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALVS+DVN GS E
Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARAT--RGSDIETTAFHT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA+++AR+LRLRD+GG+IV+DFIDM + N+R V +K A+ DR+ V++ ++SR
Sbjct: 321 NCEAAEEVARQLRLRDLGGLIVIDFIDMENSKNQREVETRLKDALHYDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RPS++ C C GTG + E+S ++
Sbjct: 381 GLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQV 421
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVSYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|229528952|ref|ZP_04418342.1| ribonuclease E [Vibrio cholerae 12129(1)]
gi|229332726|gb|EEN98212.1| ribonuclease E [Vibrio cholerae 12129(1)]
Length = 1052
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|153818441|ref|ZP_01971108.1| ribonuclease E [Vibrio cholerae NCTC 8457]
gi|126511000|gb|EAZ73594.1| ribonuclease E [Vibrio cholerae NCTC 8457]
Length = 963
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|422923329|ref|ZP_16956485.1| ribonuclease E [Vibrio cholerae BJG-01]
gi|341644186|gb|EGS68421.1| ribonuclease E [Vibrio cholerae BJG-01]
Length = 1049
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|421351762|ref|ZP_15802127.1| ribonuclease E [Vibrio cholerae HE-25]
gi|395952207|gb|EJH62821.1| ribonuclease E [Vibrio cholerae HE-25]
Length = 1049
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|255745222|ref|ZP_05419171.1| ribonuclease E [Vibrio cholera CIRS 101]
gi|262155918|ref|ZP_06029039.1| ribonuclease E [Vibrio cholerae INDRE 91/1]
gi|417817806|ref|ZP_12464435.1| ribonuclease E [Vibrio cholerae HCUF01]
gi|418335047|ref|ZP_12943960.1| ribonuclease E [Vibrio cholerae HC-06A1]
gi|418338660|ref|ZP_12947554.1| ribonuclease E [Vibrio cholerae HC-23A1]
gi|418346582|ref|ZP_12951342.1| ribonuclease E [Vibrio cholerae HC-28A1]
gi|419827001|ref|ZP_14350500.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
CP1033(6)]
gi|421318406|ref|ZP_15768974.1| ribonuclease E [Vibrio cholerae CP1032(5)]
gi|421321796|ref|ZP_15772349.1| ribonuclease E [Vibrio cholerae CP1038(11)]
gi|421333164|ref|ZP_15783641.1| ribonuclease E [Vibrio cholerae CP1046(19)]
gi|421336754|ref|ZP_15787215.1| ribonuclease E [Vibrio cholerae CP1048(21)]
gi|421340182|ref|ZP_15790614.1| ribonuclease E [Vibrio cholerae HC-20A2]
gi|421347841|ref|ZP_15798218.1| ribonuclease E [Vibrio cholerae HC-46A1]
gi|422897133|ref|ZP_16934582.1| ribonuclease E [Vibrio cholerae HC-40A1]
gi|422903333|ref|ZP_16938308.1| ribonuclease E [Vibrio cholerae HC-48A1]
gi|422907217|ref|ZP_16942020.1| ribonuclease E [Vibrio cholerae HC-70A1]
gi|422914064|ref|ZP_16948570.1| ribonuclease E [Vibrio cholerae HFU-02]
gi|422926270|ref|ZP_16959284.1| ribonuclease E [Vibrio cholerae HC-38A1]
gi|423145590|ref|ZP_17133184.1| ribonuclease E [Vibrio cholerae HC-19A1]
gi|423150266|ref|ZP_17137580.1| ribonuclease E [Vibrio cholerae HC-21A1]
gi|423154084|ref|ZP_17141265.1| ribonuclease E [Vibrio cholerae HC-22A1]
gi|423157169|ref|ZP_17144262.1| ribonuclease E [Vibrio cholerae HC-32A1]
gi|423160739|ref|ZP_17147679.1| ribonuclease E [Vibrio cholerae HC-33A2]
gi|423731577|ref|ZP_17704880.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-17A1]
gi|423768863|ref|ZP_17713009.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-50A2]
gi|423895467|ref|ZP_17727214.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-62A1]
gi|423930904|ref|ZP_17731607.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-77A1]
gi|424006808|ref|ZP_17749778.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-37A1]
gi|424024790|ref|ZP_17764441.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-62B1]
gi|424027676|ref|ZP_17767279.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-69A1]
gi|424586951|ref|ZP_18026530.1| ribonuclease E [Vibrio cholerae CP1030(3)]
gi|424595599|ref|ZP_18034920.1| ribonuclease E [Vibrio cholerae CP1040(13)]
gi|424599517|ref|ZP_18038696.1| ribonuclease E [Vibrio Cholerae CP1044(17)]
gi|424617819|ref|ZP_18056491.1| ribonuclease E [Vibrio cholerae HC-42A1]
gi|424622604|ref|ZP_18061109.1| ribonuclease E [Vibrio cholerae HC-47A1]
gi|424653332|ref|ZP_18090712.1| ribonuclease E [Vibrio cholerae HC-57A2]
gi|424657156|ref|ZP_18094441.1| ribonuclease E [Vibrio cholerae HC-81A2]
gi|440710227|ref|ZP_20890878.1| ribonuclease E [Vibrio cholerae 4260B]
gi|443504387|ref|ZP_21071345.1| ribonuclease E [Vibrio cholerae HC-64A1]
gi|443508285|ref|ZP_21075048.1| ribonuclease E [Vibrio cholerae HC-65A1]
gi|443512127|ref|ZP_21078765.1| ribonuclease E [Vibrio cholerae HC-67A1]
gi|443515685|ref|ZP_21082196.1| ribonuclease E [Vibrio cholerae HC-68A1]
gi|443519478|ref|ZP_21085874.1| ribonuclease E [Vibrio cholerae HC-71A1]
gi|443524368|ref|ZP_21090581.1| ribonuclease E [Vibrio cholerae HC-72A2]
gi|443535765|ref|ZP_21101642.1| ribonuclease E [Vibrio cholerae HC-80A1]
gi|443539308|ref|ZP_21105162.1| ribonuclease E [Vibrio cholerae HC-81A1]
gi|449055547|ref|ZP_21734215.1| Ribonuclease E [Vibrio cholerae O1 str. Inaba G4222]
gi|255737052|gb|EET92448.1| ribonuclease E [Vibrio cholera CIRS 101]
gi|262030229|gb|EEY48872.1| ribonuclease E [Vibrio cholerae INDRE 91/1]
gi|340037529|gb|EGQ98504.1| ribonuclease E [Vibrio cholerae HCUF01]
gi|341620977|gb|EGS46729.1| ribonuclease E [Vibrio cholerae HC-70A1]
gi|341621177|gb|EGS46925.1| ribonuclease E [Vibrio cholerae HC-48A1]
gi|341621923|gb|EGS47609.1| ribonuclease E [Vibrio cholerae HC-40A1]
gi|341637288|gb|EGS61976.1| ribonuclease E [Vibrio cholerae HFU-02]
gi|341646052|gb|EGS70170.1| ribonuclease E [Vibrio cholerae HC-38A1]
gi|356417071|gb|EHH70690.1| ribonuclease E [Vibrio cholerae HC-06A1]
gi|356418258|gb|EHH71861.1| ribonuclease E [Vibrio cholerae HC-21A1]
gi|356422804|gb|EHH76273.1| ribonuclease E [Vibrio cholerae HC-19A1]
gi|356428644|gb|EHH81870.1| ribonuclease E [Vibrio cholerae HC-22A1]
gi|356430302|gb|EHH83511.1| ribonuclease E [Vibrio cholerae HC-23A1]
gi|356432887|gb|EHH86082.1| ribonuclease E [Vibrio cholerae HC-28A1]
gi|356439443|gb|EHH92412.1| ribonuclease E [Vibrio cholerae HC-32A1]
gi|356445480|gb|EHH98284.1| ribonuclease E [Vibrio cholerae HC-33A2]
gi|395916664|gb|EJH27494.1| ribonuclease E [Vibrio cholerae CP1032(5)]
gi|395918790|gb|EJH29614.1| ribonuclease E [Vibrio cholerae CP1038(11)]
gi|395928566|gb|EJH39319.1| ribonuclease E [Vibrio cholerae CP1046(19)]
gi|395931853|gb|EJH42597.1| ribonuclease E [Vibrio cholerae CP1048(21)]
gi|395939465|gb|EJH50147.1| ribonuclease E [Vibrio cholerae HC-20A2]
gi|395942420|gb|EJH53096.1| ribonuclease E [Vibrio cholerae HC-46A1]
gi|395959227|gb|EJH69670.1| ribonuclease E [Vibrio cholerae HC-57A2]
gi|395961930|gb|EJH72239.1| ribonuclease E [Vibrio cholerae HC-42A1]
gi|395970718|gb|EJH80458.1| ribonuclease E [Vibrio cholerae HC-47A1]
gi|395972948|gb|EJH82522.1| ribonuclease E [Vibrio cholerae CP1030(3)]
gi|408031979|gb|EKG68579.1| ribonuclease E [Vibrio cholerae CP1040(13)]
gi|408041534|gb|EKG77640.1| ribonuclease E [Vibrio Cholerae CP1044(17)]
gi|408053163|gb|EKG88183.1| ribonuclease E [Vibrio cholerae HC-81A2]
gi|408607791|gb|EKK81194.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
CP1033(6)]
gi|408624199|gb|EKK97151.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-17A1]
gi|408633607|gb|EKL05932.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-50A2]
gi|408654336|gb|EKL25478.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-77A1]
gi|408655267|gb|EKL26392.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-62A1]
gi|408845416|gb|EKL85532.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-37A1]
gi|408870235|gb|EKM09515.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-62B1]
gi|408878979|gb|EKM17972.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-69A1]
gi|439974450|gb|ELP50627.1| ribonuclease E [Vibrio cholerae 4260B]
gi|443431332|gb|ELS73884.1| ribonuclease E [Vibrio cholerae HC-64A1]
gi|443435227|gb|ELS81371.1| ribonuclease E [Vibrio cholerae HC-65A1]
gi|443439110|gb|ELS88825.1| ribonuclease E [Vibrio cholerae HC-67A1]
gi|443443095|gb|ELS96397.1| ribonuclease E [Vibrio cholerae HC-68A1]
gi|443446896|gb|ELT03552.1| ribonuclease E [Vibrio cholerae HC-71A1]
gi|443449702|gb|ELT09993.1| ribonuclease E [Vibrio cholerae HC-72A2]
gi|443461041|gb|ELT32115.1| ribonuclease E [Vibrio cholerae HC-80A1]
gi|443465408|gb|ELT40068.1| ribonuclease E [Vibrio cholerae HC-81A1]
gi|448264586|gb|EMB01823.1| Ribonuclease E [Vibrio cholerae O1 str. Inaba G4222]
Length = 1049
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|83719665|ref|YP_442242.1| ribonuclease E [Burkholderia thailandensis E264]
gi|257138435|ref|ZP_05586697.1| ribonuclease E [Burkholderia thailandensis E264]
gi|83653490|gb|ABC37553.1| ribonuclease E [Burkholderia thailandensis E264]
Length = 1068
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 90 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 150 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGHPGQ 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 202 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKVKRYHDDVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 262 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 320 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 380 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 420
Score = 43.1 bits (100), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|416055285|ref|ZP_11579388.1| LOW QUALITY PROTEIN: ribonuclease E [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|348003210|gb|EGY43860.1| LOW QUALITY PROTEIN: ribonuclease E [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
Length = 443
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/387 (36%), Positives = 217/387 (56%), Gaps = 32/387 (8%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHP--QGTKDSKHTPGEKTWLQVQKG 294
EA F D+ E +GF P K E+ + S QG + + + +G
Sbjct: 2 EAAFVDY-------GAERHGFLPLK-EIAREYFPSGYVYQGRPNIRDI--------ISEG 45
Query: 295 TKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKT 353
+VIVQV KE G KG LT + L + +++ + R G +SR+I G ER LK +
Sbjct: 46 QEVIVQVNKEERGNKGAALTTFVSLAGSYLVIMPNNPRAGGISRRIEGDERLELKDALSS 105
Query: 354 LQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L PEG GL +RT G S EELQ DL+ LL W+ I + ++S P L+
Sbjct: 106 LDVPEGVGLIVRTAGVGKSPEELQWDLKVLLHHWEAIKQASQSRP----------APFLI 155
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
H+ + ++DY + ++++DS + Y + ++++ + PD +RV+LY +PLF
Sbjct: 156 HQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAHIKLVRPDFINRVKLYQGEVPLFSH 215
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+ NL A
Sbjct: 216 YQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSARST--RGGDIEETALNTNLEA 273
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A +IAR+LRLRD+GG+IV+DFIDM ++R V V+ AV +DR+ +++S +SR GL+E
Sbjct: 274 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRVRDAVRQDRARIQISRISRFGLLE 333
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRV 619
++R+R+ PS+ C CQGTG++
Sbjct: 334 MSRQRLSPSLGESSHHVCPRCQGTGKI 360
>gi|416953034|ref|ZP_11935600.1| ribonuclease E, partial [Burkholderia sp. TJI49]
gi|325522996|gb|EGD01422.1| ribonuclease E [Burkholderia sp. TJI49]
Length = 586
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 222/405 (54%), Gaps = 29/405 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F ++ E H GF P K EV Q K+
Sbjct: 40 NIYKGVITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKEGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 197 SQNGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ ++SR GLME++R+R+RP+++ C C GTG + E+S
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESS 419
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|254226964|ref|ZP_04920528.1| ribonuclease E [Vibrio cholerae V51]
gi|125620504|gb|EAZ48874.1| ribonuclease E [Vibrio cholerae V51]
Length = 1052
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|297579534|ref|ZP_06941462.1| ribonuclease E [Vibrio cholerae RC385]
gi|297537128|gb|EFH75961.1| ribonuclease E [Vibrio cholerae RC385]
Length = 1052
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|291451299|ref|ZP_06590689.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291354248|gb|EFE81150.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 982
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 195/327 (59%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 520 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKGI 579
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L W+ I + A ++ ++ P
Sbjct: 580 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLHGQWQEIQKKANASNASS--------PS 631
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + V Y+ +APDL DR++ + +F
Sbjct: 632 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTVHGYVSKVAPDLVDRLQRWTSETDVF 691
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E + L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 692 ATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 750
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 751 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 810
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 811 VQMTRKRVGQGLLESFSETCVHCNGRG 837
Score = 45.1 bits (105), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED+ LVE + ++ +VYLG V ++P+
Sbjct: 423 FLARREAVERVMVVRQSGERTQ-IGVLEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 481
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 482 MEAAFIDIGKGRNAVL 497
>gi|419830495|ref|ZP_14353980.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-1A2]
gi|419834177|ref|ZP_14357632.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-61A2]
gi|421354696|ref|ZP_15805028.1| ribonuclease E [Vibrio cholerae HE-45]
gi|422917881|ref|ZP_16952199.1| ribonuclease E [Vibrio cholerae HC-02A1]
gi|423822782|ref|ZP_17716792.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-55C2]
gi|423856748|ref|ZP_17720600.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-59A1]
gi|423998308|ref|ZP_17741560.1| ribonuclease E [Vibrio cholerae HC-02C1]
gi|424017202|ref|ZP_17757031.1| ribonuclease E [Vibrio cholerae HC-55B2]
gi|424020126|ref|ZP_17759912.1| ribonuclease E [Vibrio cholerae HC-59B1]
gi|424625500|ref|ZP_18063961.1| ribonuclease E [Vibrio cholerae HC-50A1]
gi|424634031|ref|ZP_18072131.1| ribonuclease E [Vibrio cholerae HC-52A1]
gi|424637109|ref|ZP_18075117.1| ribonuclease E [Vibrio cholerae HC-55A1]
gi|424641018|ref|ZP_18078901.1| ribonuclease E [Vibrio cholerae HC-56A1]
gi|424649084|ref|ZP_18086747.1| ribonuclease E [Vibrio cholerae HC-57A1]
gi|443528002|ref|ZP_21094050.1| ribonuclease E [Vibrio cholerae HC-78A1]
gi|341636763|gb|EGS61457.1| ribonuclease E [Vibrio cholerae HC-02A1]
gi|395953821|gb|EJH64434.1| ribonuclease E [Vibrio cholerae HE-45]
gi|408012053|gb|EKG49849.1| ribonuclease E [Vibrio cholerae HC-50A1]
gi|408017950|gb|EKG55422.1| ribonuclease E [Vibrio cholerae HC-52A1]
gi|408023164|gb|EKG60343.1| ribonuclease E [Vibrio cholerae HC-56A1]
gi|408023658|gb|EKG60817.1| ribonuclease E [Vibrio cholerae HC-55A1]
gi|408032603|gb|EKG69184.1| ribonuclease E [Vibrio cholerae HC-57A1]
gi|408620268|gb|EKK93280.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-1A2]
gi|408634758|gb|EKL06993.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-55C2]
gi|408640540|gb|EKL12329.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-59A1]
gi|408648999|gb|EKL20316.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-61A2]
gi|408852663|gb|EKL92485.1| ribonuclease E [Vibrio cholerae HC-02C1]
gi|408859947|gb|EKL99601.1| ribonuclease E [Vibrio cholerae HC-55B2]
gi|408867220|gb|EKM06582.1| ribonuclease E [Vibrio cholerae HC-59B1]
gi|443453518|gb|ELT17337.1| ribonuclease E [Vibrio cholerae HC-78A1]
Length = 1049
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|339479936|gb|ABE96403.1| Ribonuclease G [Bifidobacterium breve UCC2003]
Length = 1020
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 202/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 628 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 687
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I +AK +E G
Sbjct: 688 GIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 740
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 741 PKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 800
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 801 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 859
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 860 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 919
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 920 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 952
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 525 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNILVEHYVSDIQEVQTVGNIYL 582
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 583 GRVQNVLPSMEAAFVDIGQARNGVL 607
>gi|153830605|ref|ZP_01983272.1| ribonuclease E [Vibrio cholerae 623-39]
gi|148873903|gb|EDL72038.1| ribonuclease E [Vibrio cholerae 623-39]
Length = 1052
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|21231532|ref|NP_637449.1| ribonuclease E [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66768412|ref|YP_243174.1| ribonuclease E [Xanthomonas campestris pv. campestris str. 8004]
gi|21113213|gb|AAM41373.1| ribonuclease E [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66573744|gb|AAY49154.1| ribonuclease E [Xanthomonas campestris pv. campestris str. 8004]
Length = 1187
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 233/429 (54%), Gaps = 39/429 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +V+VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIREL----LREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK + K P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKDALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY + +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++Q + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGR---VEALE 623
+++ A++ DR+ V++ +SR GLME++R+R+RPS+ C C G GR VE+L
Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLS 418
Query: 624 TSFSKIEQE 632
S ++ +E
Sbjct: 419 LSIIRVAEE 427
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|424903423|ref|ZP_18326936.1| ribonuclease E [Burkholderia thailandensis MSMB43]
gi|390931296|gb|EIP88697.1| ribonuclease E [Burkholderia thailandensis MSMB43]
Length = 1045
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 90 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 150 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGHPGQ 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 202 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKVKRYHDDVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 262 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 320 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 380 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 420
Score = 43.5 bits (101), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|427386508|ref|ZP_18882705.1| rne/Rng family ribonuclease [Bacteroides oleiciplenus YIT 12058]
gi|425725998|gb|EKU88864.1| rne/Rng family ribonuclease [Bacteroides oleiciplenus YIT 12058]
Length = 524
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/352 (36%), Positives = 212/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W++ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEDAVTKIQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V+ +HE+ Y+ IAP+ V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIHVNDEAVFHEIRDYVALIAPERAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEANALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTEICPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG + KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNLSFSVGNMYLGRIKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|323359799|ref|YP_004226195.1| ribonuclease G and E [Microbacterium testaceum StLB037]
gi|323276170|dbj|BAJ76315.1| ribonuclease G and E [Microbacterium testaceum StLB037]
Length = 871
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 196/331 (59%), Gaps = 11/331 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L ++ G +V+VQV K+ +G KG LT+ L R+ + + + G+SRK+ ER RLK
Sbjct: 377 LALKSGDRVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPNGTMNGISRKLPDTERARLK 436
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I K + PE G+ +RT A G + ++L +D++ L S W+++ K+
Sbjct: 437 KILKEVLPESSGVIVRTAAEGATEDQLTRDVQRLTSQWEHVSTQLKTIQ----------A 486
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LLH + IV+D FNE +M++ +++YL +APDL +RVE Y+
Sbjct: 487 PALLHSEPDLLVKIVRDVFNEDFTRMLIQGDEALQTISNYLAGVAPDLLERVEKYEGDQD 546
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
FD F + E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 547 PFDAFRVTEQIEKALDRKVWLPSGGSLVIDRTEAMTVVDVNTGK-FVGSGGNLEETVTKN 605
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + + + RDR+ +V+E++
Sbjct: 606 NLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLVLRRLIECLSRDRTKHQVAEVTSL 665
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+++TRK++ + SE C C G G V
Sbjct: 666 GLVQMTRKKLGLGLLETFSEACEVCAGRGVV 696
Score = 44.7 bits (104), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKL 123
+ +++ V V+++ S +Q IAVLED LVE + + +VYLG V +
Sbjct: 279 EAEFLARREAVDRVMVVRSKAGRIQ-IAVLEDNVLVEHYVARNQDASLIGNVYLGRVQNV 337
Query: 124 VPNMGGAFVNIGNSRPSLM 142
+P+M AFV+IG R +++
Sbjct: 338 LPSMEAAFVDIGRGRNAVL 356
>gi|406908210|gb|EKD48786.1| hypothetical protein ACD_64C00133G0002 [uncultured bacterium]
Length = 502
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 149/437 (34%), Positives = 247/437 (56%), Gaps = 28/437 (6%)
Query: 195 ADSQDDLVQ---FEHNDDEEHDGDDFD--VSEVLKNVNGSIIDDGEPEADFEDFLEGDHH 249
A +QD L+Q F ++ E + F V++VL + + ++ G+ A F E D
Sbjct: 16 AITQDGLLQNIYFATHNQENLERSFFKGVVTKVLPGIQTAFVNIGQERAGFLHISEIDRE 75
Query: 250 LDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTK 309
L E+ +++ D K + P V++G +++QV KE + K
Sbjct: 76 LAIEN---MSKHAQIEYDEQAKQ----KARRQKPNIAKI--VKEGDPILIQVSKEPVYEK 126
Query: 310 GPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKVIAKTLQPEGFGLTIRTVAA 368
G LT L RF++L + R+GVS+KI ER RLK I + PEG G IRT +
Sbjct: 127 GAKLTTCFTLPGRFFVLTPNIPRLGVSKKIEDRDERQRLKDIVRNNLPEGMGGIIRTTSV 186
Query: 369 GHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFN 428
G + +E+ KDL L+ TW+ I ++ +SAA A ++ + + +V+D+ +
Sbjct: 187 GRTEQEITKDLRFLVQTWEGIQKNFESAAPEAK----------IYEDIPLSFQVVRDHLD 236
Query: 429 EKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVP 488
E V+ ++ D+ T E+ ++++ IAP+ +V LY + IPLF +++I+ +I L K+VP
Sbjct: 237 EDVEVVITDNKATQKELYNFVKSIAPEHSMKVMLYTQTIPLFKEYDIDSQIKLALDKKVP 296
Query: 489 LPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGI 548
L +GGSL+IE TEA+ +DVN G F S+ E I N+ AA++IAR+LRLR+IGG+
Sbjct: 297 LKSGGSLIIETTEAMAVVDVNTGK--FIGKSNLEDTIFKTNMEAAQEIARQLRLRNIGGL 354
Query: 549 IVVDFIDMADDSNKRLVYEEVKKAV-ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMIS 607
IV+DFIDMA N++ ++ ++K + E+D+ V ++S GL+++TRKR ++T +
Sbjct: 355 IVIDFIDMATAGNRQKLFNMLEKTLREKDKFQSVVLKVSEFGLVQMTRKRSGKTLTQQLM 414
Query: 608 EPCTCCQGTGRVEALET 624
E CT C+G G + +++T
Sbjct: 415 ETCTTCRGIGHISSIQT 431
>gi|424602237|ref|ZP_18041378.1| ribonuclease E [Vibrio cholerae CP1047(20)]
gi|395975383|gb|EJH84874.1| ribonuclease E [Vibrio cholerae CP1047(20)]
Length = 818
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|422307973|ref|ZP_16395127.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
CP1035(8)]
gi|408618784|gb|EKK91846.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
CP1035(8)]
Length = 1052
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|33602744|ref|NP_890304.1| ribonuclease E [Bordetella bronchiseptica RB50]
gi|33577186|emb|CAE35743.1| ribonuclease E [Bordetella bronchiseptica RB50]
Length = 1046
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSAL----HVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|229524039|ref|ZP_04413444.1| ribonuclease E [Vibrio cholerae bv. albensis VL426]
gi|229337620|gb|EEO02637.1| ribonuclease E [Vibrio cholerae bv. albensis VL426]
Length = 1052
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEEHGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|227548738|ref|ZP_03978787.1| ribonuclease E, partial [Corynebacterium lipophiloflavum DSM 44291]
gi|227079205|gb|EEI17168.1| ribonuclease E [Corynebacterium lipophiloflavum DSM 44291]
Length = 743
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 196/331 (59%), Gaps = 10/331 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G +V+VQV K+ +G KG LT L R+ + + G+SRK+ ER RLK I
Sbjct: 329 LKSGDQVMVQVTKDPVGHKGARLTTQISLAGRYLVYVPGGRSAGISRKLPAPERKRLKEI 388
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ P G IRT A G S E + D+ L + W+ + E A+ ++ +GA P+
Sbjct: 389 LAKVVPGKGGAIIRTAAEGVSEEAIAADVTRLHNQWETLQEQAER-----EKSSKGAKPV 443
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI--- 467
L+ + +V+D FNE K++VD R ++ V +Y+ +APDL DR+ YD+
Sbjct: 444 TLYEEPNLLVKVVRDLFNEDFSKLIVDGKRPWNTVHAYVSSVAPDLEDRLVRYDRAAHDG 503
Query: 468 -PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAIL 526
F+ + ++E+I LS+ V LP+GG+LVI++TEA+ IDVN G G G S E+ +
Sbjct: 504 QDAFEAYRVDEQIQKALSRTVWLPSGGTLVIDRTEAMTVIDVNTGK-FTGSGGSLEETVT 562
Query: 527 DVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELS 586
NL AA++I R++RLRDIGG+I+VDFIDM N+ LV +K+A+ RDR+ +VSE++
Sbjct: 563 RNNLEAAEEIVRQMRLRDIGGMIIVDFIDMILPENQELVLRRLKEALGRDRTRHQVSEVT 622
Query: 587 RHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
GL+++TRKR+ + S PC CC G G
Sbjct: 623 SLGLVQMTRKRLGTGLLETFSTPCECCGGRG 653
>gi|167763388|ref|ZP_02435515.1| hypothetical protein BACSTE_01762 [Bacteroides stercoris ATCC
43183]
gi|167698682|gb|EDS15261.1| S1 RNA binding domain protein [Bacteroides stercoris ATCC 43183]
Length = 524
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 213/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W+ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEEAIVKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V++ ++E+ Y+ IAP+ V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIYVNNEAVFNEIKDYVTLIAPERAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRI-KNANGQEANALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|424660544|ref|ZP_18097791.1| ribonuclease E [Vibrio cholerae HE-16]
gi|408050453|gb|EKG85616.1| ribonuclease E [Vibrio cholerae HE-16]
Length = 1049
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|329954387|ref|ZP_08295479.1| S1 RNA binding domain protein [Bacteroides clarus YIT 12056]
gi|328527655|gb|EGF54648.1| S1 RNA binding domain protein [Bacteroides clarus YIT 12056]
Length = 524
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 212/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W+ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEEAITKVQKAT---------KYPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V++ ++E+ Y+ IAP+ V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIYVNNEAVFNEIKDYVTLIAPERAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEANALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|229521942|ref|ZP_04411359.1| ribonuclease E [Vibrio cholerae TM 11079-80]
gi|423883051|ref|ZP_17724188.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-60A1]
gi|424629983|ref|ZP_18068270.1| ribonuclease E [Vibrio cholerae HC-51A1]
gi|229340867|gb|EEO05872.1| ribonuclease E [Vibrio cholerae TM 11079-80]
gi|408054771|gb|EKG89730.1| ribonuclease E [Vibrio cholerae HC-51A1]
gi|408641175|gb|EKL12956.1| ribonuclease, Rne/Rng family domain protein [Vibrio cholerae
HC-60A1]
Length = 1052
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 54 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 100 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 160 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 210 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 270 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 388 RQRLSPSLAEASHHICPRCKGTG 410
>gi|237748408|ref|ZP_04578888.1| ribonuclease E protein [Oxalobacter formigenes OXCC13]
gi|229379770|gb|EEO29861.1| ribonuclease E protein [Oxalobacter formigenes OXCC13]
Length = 977
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 208/364 (57%), Gaps = 18/364 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G +++VQV KE G KG LT + L R+ +L+ + R G VSR++ G ER L+
Sbjct: 95 EGQEIMVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEERQELREAM 154
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L+ P G + RT G S EELQ DL LL W N +E A S+A A
Sbjct: 155 DKLEVPAGMSIIARTAGIGRSTEELQWDLNYLLQLW-NAIEGAGSSAPGA---------F 204
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L++ + ++DYF + ++++D+ Y + ++ + PD+ +RV+ Y +PLF
Sbjct: 205 LIYHESSLVIRAIRDYFQPDIGEILIDTDEIYEQARQFMSHVMPDMVNRVKRYRDDVPLF 264
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+F IE +I S+ V LP+GGS+VI+ TEALV++DVN G+ E + N
Sbjct: 265 SRFQIEHQIETAYSRVVSLPSGGSIVIDHTEALVAVDVNSARST--RGTDIETTAFNTNC 322
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA+++AR+LRLRD+GG+IV+DFIDM N+R + +K+A+ DR+ V++ +++R GL
Sbjct: 323 EAAEEVARQLRLRDLGGLIVIDFIDMESAKNRREIENRLKEALHYDRARVQMDKITRFGL 382
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFI 650
ME++R+R+RPS++ C C GTG + E+S ++ R++ +S +S+
Sbjct: 383 MELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSA----LQVLRIIEEESMKESSAVIH 438
Query: 651 RHIP 654
IP
Sbjct: 439 VQIP 442
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y V+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIESNSRELHKSNIYKAVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|453050306|gb|EME97850.1| ribonuclease, Rne/Rng family [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 1407
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 199/327 (60%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 751 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 810
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W++I + +K + ++ P
Sbjct: 811 LKKIVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEDIQKKSKMISTSS--------PS 862
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ + + +F
Sbjct: 863 LLYGEPDMTVRVVRDIFNEDFSKVIVSGEGAWETIHGYVSHVAPDLVDRLQKWTSDVDVF 922
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V +DVN G G G + E+ + NL
Sbjct: 923 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMVVVDVNTGK-FTGQGGNLEETVTRNNL 981
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 982 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1041
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 1042 VQMTRKRVGQGLLESFSESCVHCNGRG 1068
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED LVE + ++ +VYLG V ++P+M AFV+IG R +++
Sbjct: 675 QIGVLEDNVLVEHFVNKEQATSYVGNVYLGKVQNVLPSMEAAFVDIGKGRNAVL 728
>gi|384428007|ref|YP_005637366.1| ribonuclease E [Xanthomonas campestris pv. raphani 756C]
gi|341937109|gb|AEL07248.1| ribonuclease E [Xanthomonas campestris pv. raphani 756C]
Length = 1189
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 233/429 (54%), Gaps = 39/429 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 23 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +V+VQV KE G KG LT + L R+ +L+
Sbjct: 75 FQA---GVDHNKSTIREL----LREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLMP 127
Query: 328 TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK + K P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 128 NSPSAGGVSRRIEGEDRAALKDALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 187
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY + +++VD+P Y +
Sbjct: 188 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQ 237
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++Q + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 238 EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 297
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 298 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVE 355
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGR---VEALE 623
+++ A++ DR+ V++ +SR GLME++R+R+RPS+ C C G GR VE+L
Sbjct: 356 NKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLS 415
Query: 624 TSFSKIEQE 632
S ++ +E
Sbjct: 416 LSIIRVAEE 424
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 1 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 61 RHGFLPLK 68
>gi|329934590|ref|ZP_08284631.1| cytoplasmic axial filament protein CafA and Ribonuclease G
[Streptomyces griseoaurantiacus M045]
gi|329305412|gb|EGG49268.1| cytoplasmic axial filament protein CafA and Ribonuclease G
[Streptomyces griseoaurantiacus M045]
Length = 1455
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 194/327 (59%), Gaps = 10/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 779 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKSI 838
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL++D+E L + W+ I + +K+ G P
Sbjct: 839 LKKVVPEDAGVIVRTAAEGASEDELRRDVERLQAQWEEIKKKSKNG---------GTAPT 889
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K+VV + + Y+ +APDL R+ + +F
Sbjct: 890 LLYGEPDMTVRVVRDIFNEDFSKVVVSGDEAWSTIHGYVSHVAPDLAPRLSRWTSETDVF 949
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA+V IDVN G G G + E+ + NL
Sbjct: 950 ATYRIDEQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGK-FTGQGGNLEETVTRNNL 1008
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 1009 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1068
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 1069 VQMTRKRVGQGLLESFSETCVHCNGRG 1095
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED LVE + ++ +VYLG V ++P+
Sbjct: 682 FLARREAVERVMVVRQSGERTQ-IGVLEDNVLVEHYVNKEQAVSYVGNVYLGKVQNVLPS 740
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 741 MEAAFIDIGKGRNAVL 756
>gi|282877162|ref|ZP_06286000.1| S1 RNA binding domain protein [Prevotella buccalis ATCC 35310]
gi|281300654|gb|EFA92985.1| S1 RNA binding domain protein [Prevotella buccalis ATCC 35310]
Length = 524
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/424 (32%), Positives = 232/424 (54%), Gaps = 21/424 (4%)
Query: 219 VSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKD 278
V +++ +N +D G F +L+ L + N + +V D +P
Sbjct: 46 VKKLMPGLNACFVDVGYERDAFLHYLD----LGSQFNSYAKYLKQVQSDRKKLYPFA--K 99
Query: 279 SKHTPGEKTWLQVQK----GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG 334
+ H P + VQ G +++VQ+VKE + TKGP LTA RF +LI D++
Sbjct: 100 ASHLPDLQKDGSVQSTLTLGQEILVQIVKEPISTKGPRLTAELSFAGRFLVLIPFGDKVS 159
Query: 335 VSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHA 393
VS KI G ER RLK + ++++P+ G+ +RTVA G + EL +++ L W++ +
Sbjct: 160 VSSKIKNGEERARLKQLVRSIKPKNCGVIVRTVAEGKRVAELDGEMKVLTKRWQDAIVKV 219
Query: 394 KSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIA 453
+ P L++ + +++++D FN + + ++ + +V Y+ IA
Sbjct: 220 QKTQ---------KRPQLVYEEAVRAIALLRDIFNPSFENIYINDEEAFRQVKDYVTLIA 270
Query: 454 PDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 513
P V+ Y ++P+FD FNI ++I + K + +G L+IE TEAL +DVN G+
Sbjct: 271 PSKSGIVKRYTGKVPIFDNFNITKQIKSSFGKTINYKHGAYLIIEHTEALHVVDVNSGNR 330
Query: 514 MFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573
+ A L+VNL AA ++AR+LRLRD+GGIIVVDFIDM +++++YE + K +
Sbjct: 331 TRKENDQEANA-LEVNLGAADELARQLRLRDMGGIIVVDFIDMHLAEDRQMLYERMCKNM 389
Query: 574 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEI 633
+ DR+ + LS+ GLM+ITR+RVRP + + E C C GTG++++ ++E++I
Sbjct: 390 QSDRARHNILPLSKFGLMQITRQRVRPVMDVNVDETCPTCNGTGKIKSSILFTDQLERKI 449
Query: 634 SRLL 637
+L+
Sbjct: 450 DKLV 453
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 91 AVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
A+LED++LVE EP + +VY+ V KL+P + FV++G R + + HY
Sbjct: 17 ALLEDKRLVEYQNEPRSATFSVGNVYIAKVKKLMPGLNACFVDVGYERDAFL---HY 70
>gi|384197835|ref|YP_005583579.1| ribonuclease E/G family protein [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|333110262|gb|AEF27278.1| ribonuclease E/G family protein [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 1023
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 202/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 631 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 690
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E + KDLE L+ W+ I +AK +E G
Sbjct: 691 GIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 743
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 744 PKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 803
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 804 EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 862
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 863 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 922
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 923 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 955
Score = 41.2 bits (95), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 528 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNILVEHYVSDIQEVQTVGNIYL 585
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 586 GRVQNVLPSMEAAFVDIGQARNGVL 610
>gi|218130463|ref|ZP_03459267.1| hypothetical protein BACEGG_02052 [Bacteroides eggerthii DSM 20697]
gi|317473946|ref|ZP_07933225.1| rne/Rng family ribonuclease [Bacteroides eggerthii 1_2_48FAA]
gi|217987342|gb|EEC53672.1| S1 RNA binding domain protein [Bacteroides eggerthii DSM 20697]
gi|316909788|gb|EFV31463.1| rne/Rng family ribonuclease [Bacteroides eggerthii 1_2_48FAA]
Length = 524
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 212/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSELSFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W+ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEEAITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + + +++D FN + + V++ ++E+ Y+ IAP+ V+LY ++P++D
Sbjct: 230 YEETSRAVGLLRDLFNPSFENIYVNNEAVFNEIRDYVTLIAPERAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEANALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
IA+LED+ LVEL E + ++YLG V KL+P + FV++G + + + HY
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HY 70
>gi|153803670|ref|ZP_01958256.1| ribonuclease E [Vibrio cholerae MZO-3]
gi|124120794|gb|EAY39537.1| ribonuclease E [Vibrio cholerae MZO-3]
Length = 619
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 210/383 (54%), Gaps = 28/383 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K + + P G + P K L +G +
Sbjct: 51 EAAFVDY-------GAERHGFLPLK----EIAREYFPDGY-SYQGRPNIKDVLN--EGQE 96
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQ+ KE G+KG LT + L + +L+ + R G +SR+I G ERT LK +L+
Sbjct: 97 VIVQIEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSSLE 156
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+G GL +RT G S EEL+ DL LL W I + + S P L+H+
Sbjct: 157 LPQGMGLIVRTAGVGKSAEELEWDLNVLLKHWSAIKQASDS----------NPAPFLIHQ 206
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + ++++DS Y +++ + PD +RV+ Y+ +PLF F
Sbjct: 207 ESNVIVRAIRDYLRRDIGEILIDSNSIYERALEHIRLVRPDFVNRVKKYEGEVPLFSHFQ 266
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L+ NL AA
Sbjct: 267 IESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALNTNLEAAD 324
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRD+GG++V+DFIDM ++R V +++AV DR+ V++ +SR GL+E++
Sbjct: 325 EIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLREAVRVDRARVQIGRISRFGLLEMS 384
Query: 595 RKRVRPSVTFMISEPCTCCQGTG 617
R+R+ PS+ C C+GTG
Sbjct: 385 RQRLSPSLAEASHHICPRCKGTG 407
>gi|380513166|ref|ZP_09856573.1| ribonuclease E, partial [Xanthomonas sacchari NCPPB 4393]
Length = 665
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/386 (36%), Positives = 218/386 (56%), Gaps = 25/386 (6%)
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
GE +GF P K E+ D + G +K T E +++G +V+VQV KE G KG
Sbjct: 59 GERHGFLPLK-EISRDYFQA---GVDHNKATIREL----LREGQEVVVQVDKEERGNKGA 110
Query: 312 TLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAG 369
LT + L R+ +L+ S GVSR+I G +R LK L P+ G+ IRT G
Sbjct: 111 ALTTFISLAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLNIPDDMGVIIRTAGVG 170
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
EELQ DL+ LL WK+I E AALA P L+++ + ++DY
Sbjct: 171 RDAEELQWDLDYLLQVWKSIAE----AALAK------PAPFLIYQESRLIIRALRDYLRA 220
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
+ +++VD+ Y + ++Q + P +++ Y IPLF++F IE +I + V L
Sbjct: 221 DIGEILVDTEEMYGDAKEFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRL 280
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549
P+GGS+V++QTEAL ++DVN GS E NL AA+++AR+LRLRD+GG++
Sbjct: 281 PSGGSIVVDQTEALTAVDVNSSRAT--KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLV 338
Query: 550 VVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEP 609
V+DFIDMA + ++R V ++ A++ DR+ V++ +SR GL+E++R+R+RPS+
Sbjct: 339 VIDFIDMASNKHQREVENRLQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIV 398
Query: 610 CTCCQGTGR---VEALETSFSKIEQE 632
C C G GR VE+L S ++ +E
Sbjct: 399 CPRCDGHGRMRSVESLSLSIIRVAEE 424
Score = 39.7 bits (91), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV G
Sbjct: 1 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYGGE 60
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 61 RHGFLPLK 68
>gi|94499594|ref|ZP_01306131.1| Ribonucleases G and E [Bermanella marisrubri]
gi|94428348|gb|EAT13321.1| Ribonucleases G and E [Oceanobacter sp. RED65]
Length = 873
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 209/385 (54%), Gaps = 30/385 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF E +GF P K E+ + G + K +++G +
Sbjct: 51 EAAFVDF-------GAERHGFLPLK-EISREYFKQSTSGRPNIKDV--------IEEGQE 94
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
V+VQV KE G KG LT L R+ +L+ + R G +SR+I G ER +++ + +
Sbjct: 95 VVVQVDKEERGNKGAALTTMISLAGRYLVLMPNNARAGGISRRIEGDERNQIRDAMRDVN 154
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P G+ +RT G + EELQ DL+ L W I K A D P LL +
Sbjct: 155 VPNNMGVIVRTAGIGRASEELQWDLDYLCQLWDAI----KGAYDRRD------APCLLLQ 204
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY + + ++++D P Y E S++Q + P ++++LY PLF ++
Sbjct: 205 ESNVVIRAIRDYLRQDIGEVLIDDPVVYDEALSFVQAVMPQYENKIKLYQDSTPLFSRYQ 264
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEAL+SID+N GS E L+ NL AA
Sbjct: 265 IEAQIETAYQREVKLPSGGSIVIDTTEALISIDINSSRST--KGSDIEDTALNTNLEAAD 322
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG+IV+DFIDM + N+R V +K A+E DR+ V+V +SR GL+E++
Sbjct: 323 EIARQLRLRDIGGLIVIDFIDMTSNKNQREVENRMKDALEIDRARVQVGRISRFGLLEMS 382
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRV 619
R+R+RPS+ C C GTG +
Sbjct: 383 RQRLRPSLGETSGHVCPRCDGTGTI 407
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +EP + ++Y G +T++ P++ AFV+ G
Sbjct: 1 MLINATQSEELRVALVDGQRLYDLDIEPTTRQQKKANIYKGKITRVEPSLEAAFVDFGAE 60
Query: 138 RPSLMDIKHY-REPF 151
R + +K RE F
Sbjct: 61 RHGFLPLKEISREYF 75
>gi|451936560|ref|YP_007460414.1| ribonuclease E [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
gi|451777483|gb|AGF48458.1| ribonuclease E [Candidatus Kinetoplastibacterium oncopeltii
TCC290E]
Length = 851
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 148/434 (34%), Positives = 235/434 (54%), Gaps = 35/434 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ I EP EA F ++ E H GF P K E+ + K+
Sbjct: 40 NIYKGTITRVEPGLEACFINYGEDKH-------GFLPFK-EITKNYF-------KEGIDI 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
G + + +G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 KGARIQDVITEGLELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ + L PEG + RT G + ELQ DL LL W N ++ A S
Sbjct: 145 EERQELRETMEQLSVPEGMSIIARTAGIGRTSNELQWDLSYLLQLW-NAIDKASS----- 198
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
E PIL++ + ++DYF+ + ++++D+ +VT+++ + PD RV
Sbjct: 199 ----ENQSPILIYLESSLVIRAIRDYFSPNISEILIDNDDIVKQVTAFMSIVMPDNIQRV 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ + LP+GGS+VI+ TEALV+IDVN GS
Sbjct: 255 KHYQSDVPLFSRFQIEHQIETAYSRMIQLPSGGSIVIDHTEALVAIDVNSAKST--RGSD 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ L N AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + +++++ DR+ V
Sbjct: 313 IEETALLTNQEAADEVARQLRLRDLGGLIVIDFIDMDDAKNQRSVEQRLRESLRVDRARV 372
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSK 640
++ ++S+ GL+E++R+R+RP++ + C C GTG + E+S +I RL+ +
Sbjct: 373 QMGKISKFGLIELSRQRLRPALNEASHKICPRCTGTGVIRDTESS----ALQILRLIQEE 428
Query: 641 SYNQSTFYFIRHIP 654
+ + T+ +P
Sbjct: 429 AMKEGTYIIHAQVP 442
>gi|410473811|ref|YP_006897092.1| ribonuclease E [Bordetella parapertussis Bpp5]
gi|408443921|emb|CCJ50615.1| ribonuclease E [Bordetella parapertussis Bpp5]
Length = 1033
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 90 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 150 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 199
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 200 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 259
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 260 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 317
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 318 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 377
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 378 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSA----LHVLRLLQEEAMKENTAA 433
Query: 649 FIRHIP 654
+P
Sbjct: 434 VHAQVP 439
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 1 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 60
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 61 RHGFLPFKEVARSFFKEGVDVRTAR 85
>gi|300311210|ref|YP_003775302.1| ribonuclease E protein [Herbaspirillum seropedicae SmR1]
gi|300073995|gb|ADJ63394.1| ribonuclease E protein [Herbaspirillum seropedicae SmR1]
Length = 1062
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 201/341 (58%), Gaps = 14/341 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT++ L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQEIIVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G + RT G +++ELQ DL L+ W+ I +SA+ A
Sbjct: 153 TMDKLDLPNGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGQSASGA--------- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ + + ++ + PD+ RV+ Y +P
Sbjct: 204 -FLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQQFMAHVMPDMVHRVKRYRDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALVS+DVN GS E +
Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARAT--RGSDIETTAFNT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM + N+R V +K A+ DR+ V++ ++SR
Sbjct: 321 NLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGRLKDALHHDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RPS++ C C GTG + E+S ++
Sbjct: 381 GLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQV 421
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|167563552|ref|ZP_02356468.1| ribonuclease E [Burkholderia oklahomensis EO147]
Length = 551
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 222/405 (54%), Gaps = 29/405 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q K+
Sbjct: 37 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKEGVDM 81
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 82 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 141
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 142 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 193
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 194 SQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKV 253
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 254 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 311
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 312 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 371
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ ++SR GLME++R+R+RP+++ C C GTG + E+S
Sbjct: 372 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESS 416
Score = 42.4 bits (98), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|186475583|ref|YP_001857053.1| ribonuclease [Burkholderia phymatum STM815]
gi|184192042|gb|ACC70007.1| ribonuclease, Rne/Rng family [Burkholderia phymatum STM815]
Length = 1092
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 205/341 (60%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 93 LKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ PEG + RT G S EELQ DL L+ W+ I ++S G +G
Sbjct: 153 TMSQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS-------GTQGQ- 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD ++V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVNKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.4 bits (98), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G+VT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK-----HYRE 149
R + K ++RE
Sbjct: 64 RHGFLPFKEVARQYFRE 80
>gi|188991779|ref|YP_001903789.1| ribonuclease E [Xanthomonas campestris pv. campestris str. B100]
gi|167733539|emb|CAP51743.1| ribonuclease E [Xanthomonas campestris pv. campestris]
Length = 1194
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 154/429 (35%), Positives = 233/429 (54%), Gaps = 39/429 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +V+VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIREL----LREGQEVVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK + K P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKDALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY + +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++Q + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGR---VEALE 623
+++ A++ DR+ V++ +SR GLME++R+R+RPS+ C C G GR VE+L
Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLS 418
Query: 624 TSFSKIEQE 632
S ++ +E
Sbjct: 419 LSIIRVAEE 427
Score = 39.7 bits (91), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|220928744|ref|YP_002505653.1| ribonuclease, Rne/Rng family [Clostridium cellulolyticum H10]
gi|219999072|gb|ACL75673.1| ribonuclease, Rne/Rng family [Clostridium cellulolyticum H10]
Length = 494
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/349 (37%), Positives = 209/349 (59%), Gaps = 13/349 (3%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKVIAK 352
G ++ VQV+KE +GTKGP ++ + L R +L+ + D IG+SR+I ER +LK IA+
Sbjct: 102 GQEITVQVIKEPIGTKGPRVSTHITLPGRNLVLLPNADYIGISRRIENDAERQKLKKIAE 161
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
L+P+ GL +RTV+ G + +D+ L+ W I E + G VP +
Sbjct: 162 KLKPQNMGLIVRTVSEGKEESDFVEDVSFLIKLWAKIKESENN----------GPVPRCI 211
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
HR + V+D F V K +++S + Y +V ++ I+P L RVEL+ K +FD
Sbjct: 212 HRDINLIYRSVRDLFTWDVNKFIINSEKEYSKVLELVEMISPLLKSRVELFQKDYKIFDY 271
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
+ IE +I LS++V L GG ++I++TEAL IDVN G F S+ E+ +L N+ A
Sbjct: 272 YQIESKIERALSRKVWLKCGGYIIIDKTEALTVIDVNTGK--FVGESNLEETVLKTNIEA 329
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
++IA++LRLRDIGGI+++DFIDM + +++LV + +K++++ DR+ V ++ GL+E
Sbjct: 330 TREIAKQLRLRDIGGIVIIDFIDMNNAEHQQLVLDSLKQSLKDDRTKTIVLGMTELGLVE 389
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKS 641
+TRK++R ++ +IS C C G GRV ET+ I +E+ + S S
Sbjct: 390 MTRKKIRQELSTVISCDCPICDGAGRVYTAETNAMNILREVREHMNSTS 438
>gi|365539273|ref|ZP_09364448.1| ribonuclease E [Vibrio ordalii ATCC 33509]
Length = 1037
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 218/402 (54%), Gaps = 36/402 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKS---EVPDDSHTSHPQGTKDS 279
N+ I EP EA F D+ E +GF P K E D +T QG +
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDGYTY--QGRPNI 90
Query: 280 KHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRK 338
K +++G +VIVQV KE G+KG LT + L + +L+ + R G +SR+
Sbjct: 91 KEA--------LKEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142
Query: 339 ITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAA 397
I G ERT LK +L+ P+G GL +RT G S EEL+ DL LL+ W I +
Sbjct: 143 IEGDERTELKTALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQ------ 196
Query: 398 LAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLC 457
A+D P+L+H+ + ++DY + ++++DS Y +++ + PD
Sbjct: 197 -ASDLR---PAPLLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFV 252
Query: 458 DRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGH 517
RV+ YD +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N
Sbjct: 253 SRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--K 310
Query: 518 GSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDR 577
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRLDR 370
Query: 578 SMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+ V++ +SR GL+E++R+R+ PS+ C C GTG V
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVV 412
>gi|427815760|ref|ZP_18982824.1| ribonuclease E [Bordetella bronchiseptica 1289]
gi|410566760|emb|CCN24329.1| ribonuclease E [Bordetella bronchiseptica 1289]
Length = 1038
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSA----LHVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|336123711|ref|YP_004565759.1| ribonuclease E [Vibrio anguillarum 775]
gi|335341434|gb|AEH32717.1| Ribonuclease E [Vibrio anguillarum 775]
Length = 1026
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 146/402 (36%), Positives = 218/402 (54%), Gaps = 36/402 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKS---EVPDDSHTSHPQGTKDS 279
N+ I EP EA F D+ E +GF P K E D +T QG +
Sbjct: 40 NIYKGRITRVEPSLEAAFVDY-------GAERHGFLPLKEIAREYFPDGYTY--QGRPNI 90
Query: 280 KHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRK 338
K +++G +VIVQV KE G+KG LT + L + +L+ + R G +SR+
Sbjct: 91 KEA--------LKEGQEVIVQVEKEERGSKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142
Query: 339 ITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAA 397
I G ERT LK +L+ P+G GL +RT G S EEL+ DL LL+ W I +
Sbjct: 143 IEGDERTELKTALSSLELPQGMGLIVRTAGVGKSAEELEWDLNVLLNHWSAIKQ------ 196
Query: 398 LAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLC 457
A+D P+L+H+ + ++DY + ++++DS Y +++ + PD
Sbjct: 197 -ASDLR---PAPLLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERALEHIRLVRPDFV 252
Query: 458 DRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGH 517
RV+ YD +PLF + IE +I + + V LP+GGS+VI+ TEAL SID+N
Sbjct: 253 SRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--K 310
Query: 518 GSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDR 577
G E+ L+ NL AA +IAR+LRLRD+GG++V+DFIDM ++R V ++ AV DR
Sbjct: 311 GGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRLDR 370
Query: 578 SMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+ V++ +SR GL+E++R+R+ PS+ C C GTG V
Sbjct: 371 ARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVV 412
>gi|294625340|ref|ZP_06703976.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
gi|292600358|gb|EFF44459.1| ribonuclease E [Xanthomonas fuscans subsp. aurantifolii str. ICPB
11122]
Length = 631
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 153/429 (35%), Positives = 231/429 (53%), Gaps = 39/429 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 26 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 77
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 78 FQA---GVDHNKSTIRE----LLREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLMP 130
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 131 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY V +++VD+P Y +
Sbjct: 191 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADVGEILVDTPELYADAQ 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++ + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 241 EFMKQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 301 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGR---VEALE 623
++ A++ DR+ V++ +SR GLME++R+R+RPS+ C C G GR VE+L
Sbjct: 359 NRLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLS 418
Query: 624 TSFSKIEQE 632
S ++ +E
Sbjct: 419 LSIIRVAEE 427
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|270284329|ref|ZP_06193944.1| ribonuclease, Rne/Rng family domain protein [Bifidobacterium
gallicum DSM 20093]
gi|270276653|gb|EFA22507.1| ribonuclease, Rne/Rng family domain protein [Bifidobacterium
gallicum DSM 20093]
Length = 898
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 128/330 (38%), Positives = 199/330 (60%), Gaps = 12/330 (3%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIA 351
+ G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK I
Sbjct: 489 RSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSEHERSRLKSIV 548
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
+ P+ G+ IRT A G S E + KDLE L+ W++I AK +E G P L
Sbjct: 549 AKVAPKDMGVIIRTAAEGASEEAITKDLENLMHQWEHIT--AKR-----EEFRNGKRPKL 601
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD----KRI 467
L + +V+D FN+ K++V+ Y + YL +APDL ++E +D +
Sbjct: 602 LQGEPDVAIRVVRDIFNDDFSKLIVEGETVYERIAEYLDTMAPDLKAKLEQWDPAEHQGK 661
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
+FDK+ I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+ +
Sbjct: 662 DVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGRSLEETVTA 720
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
NL AA++IAR+LRLRDIGG++++DF+DM +N+ LV + + + RDR+ +V+E++
Sbjct: 721 CNLEAAEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLLECLARDRTKHQVAEVTS 780
Query: 588 HGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
GL+++TRKR+ + SE C C+G G
Sbjct: 781 LGLVQMTRKRIGQGLVEAFSEECPTCKGRG 810
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I+V+ED LVE + ++ ++YLG V ++P+M AFV+IG +R ++
Sbjct: 412 QISVIEDNILVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVL 465
>gi|372266754|ref|ZP_09502802.1| ribonuclease E [Alteromonas sp. S89]
Length = 1027
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 192/331 (58%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G ER+ L+
Sbjct: 92 VKEGMEVIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERSDLRD 151
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
++ P G G+ +RT G S EELQ DL LL W I + A E
Sbjct: 152 ALSSVDVPSGMGIIVRTAGVGRSGEELQWDLNYLLQLWTAIKKEAD----------ESKA 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L + + ++DY + + +++VD Y + + + P+ ++V+ YD IP
Sbjct: 202 PHFLFQESNVIIRAIRDYMRDDIGEVIVDENGAYQLAAEFARQVMPNYANKVKFYDDNIP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ IE +I + V LP+GGS+VI+ TEAL+SID+N G E+ +
Sbjct: 262 LFNRYQIESQIETAFEREVKLPSGGSIVIDVTEALISIDINSSRAT--KGGDIEETARTI 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG++V+DFIDM S++R V + ++KA+ DR+ V+V +SR
Sbjct: 320 NLEAADEIARQLRLRDMGGLVVIDFIDMQSKSSQREVEKRMEKALGMDRARVQVGRISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+RPS+ C C GTG +
Sbjct: 380 GLLEMSRQRLRPSLGETTFRVCPRCSGTGTI 410
>gi|53712844|ref|YP_098836.1| ribonuclease G [Bacteroides fragilis YCH46]
gi|60681067|ref|YP_211211.1| ribonuclease E [Bacteroides fragilis NCTC 9343]
gi|265762945|ref|ZP_06091513.1| ribonuclease G [Bacteroides sp. 2_1_16]
gi|336409163|ref|ZP_08589650.1| hypothetical protein HMPREF1018_01666 [Bacteroides sp. 2_1_56FAA]
gi|375357871|ref|YP_005110643.1| putative ribonuclease E [Bacteroides fragilis 638R]
gi|383117707|ref|ZP_09938450.1| rne/Rng family ribonuclease [Bacteroides sp. 3_2_5]
gi|423249505|ref|ZP_17230521.1| rne/Rng family ribonuclease [Bacteroides fragilis CL03T00C08]
gi|423256182|ref|ZP_17237110.1| rne/Rng family ribonuclease [Bacteroides fragilis CL03T12C07]
gi|423258163|ref|ZP_17239086.1| rne/Rng family ribonuclease [Bacteroides fragilis CL07T00C01]
gi|423264869|ref|ZP_17243872.1| rne/Rng family ribonuclease [Bacteroides fragilis CL07T12C05]
gi|423268552|ref|ZP_17247524.1| rne/Rng family ribonuclease [Bacteroides fragilis CL05T00C42]
gi|423273888|ref|ZP_17252835.1| rne/Rng family ribonuclease [Bacteroides fragilis CL05T12C13]
gi|423279401|ref|ZP_17258314.1| rne/Rng family ribonuclease [Bacteroides fragilis HMW 610]
gi|423284901|ref|ZP_17263784.1| rne/Rng family ribonuclease [Bacteroides fragilis HMW 615]
gi|52215709|dbj|BAD48302.1| ribonuclease G [Bacteroides fragilis YCH46]
gi|60492501|emb|CAH07271.1| putative ribonuclease E [Bacteroides fragilis NCTC 9343]
gi|251946947|gb|EES87229.1| rne/Rng family ribonuclease [Bacteroides sp. 3_2_5]
gi|263255553|gb|EEZ26899.1| ribonuclease G [Bacteroides sp. 2_1_16]
gi|301162552|emb|CBW22099.1| putative ribonuclease E [Bacteroides fragilis 638R]
gi|335946931|gb|EGN08726.1| hypothetical protein HMPREF1018_01666 [Bacteroides sp. 2_1_56FAA]
gi|387777609|gb|EIK39706.1| rne/Rng family ribonuclease [Bacteroides fragilis CL07T00C01]
gi|392649373|gb|EIY43051.1| rne/Rng family ribonuclease [Bacteroides fragilis CL03T12C07]
gi|392655590|gb|EIY49232.1| rne/Rng family ribonuclease [Bacteroides fragilis CL03T00C08]
gi|392703836|gb|EIY96977.1| rne/Rng family ribonuclease [Bacteroides fragilis CL05T00C42]
gi|392704602|gb|EIY97737.1| rne/Rng family ribonuclease [Bacteroides fragilis CL07T12C05]
gi|392707321|gb|EIZ00440.1| rne/Rng family ribonuclease [Bacteroides fragilis CL05T12C13]
gi|404579490|gb|EKA84204.1| rne/Rng family ribonuclease [Bacteroides fragilis HMW 615]
gi|404585156|gb|EKA89776.1| rne/Rng family ribonuclease [Bacteroides fragilis HMW 610]
Length = 524
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 213/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W+ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEESITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + +++++D FN + + V++ ++E+ Y+ IAP+ V+LY ++P++D
Sbjct: 230 YEETSRAVALLRDLFNPSFENIYVNNEAVFNEIRDYVTLIAPERAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ +E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTTETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 42.7 bits (99), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG V KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKYVKQTLSDKKKLNPISKATLLPDL---DKDGTVANTLKVGQ 120
>gi|412341922|ref|YP_006970677.1| ribonuclease E [Bordetella bronchiseptica 253]
gi|408771756|emb|CCJ56560.1| ribonuclease E [Bordetella bronchiseptica 253]
Length = 1061
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH----VLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|167570711|ref|ZP_02363585.1| ribonuclease E [Burkholderia oklahomensis C6786]
Length = 711
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 199/337 (59%), Gaps = 12/337 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 90 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 150 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGHPGQ 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 202 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKVKRYHDDVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 262 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 320 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GLME++R+R+RP+++ C C GTG + E+S
Sbjct: 380 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESS 416
Score = 43.1 bits (100), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|33591687|ref|NP_879331.1| ribonuclease E [Bordetella pertussis Tohama I]
gi|384202968|ref|YP_005588707.1| ribonuclease E [Bordetella pertussis CS]
gi|33571330|emb|CAE44805.1| ribonuclease E [Bordetella pertussis Tohama I]
gi|332381082|gb|AEE65929.1| ribonuclease E [Bordetella pertussis CS]
Length = 1042
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVIPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSAL----HVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|408416477|ref|YP_006627184.1| ribonuclease E [Bordetella pertussis 18323]
gi|401778647|emb|CCJ64087.1| ribonuclease E [Bordetella pertussis 18323]
Length = 1040
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVIPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSAL----HVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|171317150|ref|ZP_02906352.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5]
gi|171097717|gb|EDT42547.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MEX-5]
Length = 1050
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 224/409 (54%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F ++ E H GF P K EV Q KD
Sbjct: 40 NIYKGVITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKDGIDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|374335783|ref|YP_005092470.1| ribonuclease E [Oceanimonas sp. GK1]
gi|372985470|gb|AEY01720.1| ribonuclease E [Oceanimonas sp. GK1]
Length = 976
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 196/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
V++G +VIVQ+ KE G KG LT + L + +L+ + R G +SR+I G ERT LK
Sbjct: 81 VKEGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKE 140
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+++ P+G GL +RT G S EEL+ DL L + W I E A+S
Sbjct: 141 ALSRLKLPDGMGLIVRTAGVGKSGEELEWDLNVLKTHWTAIQEAAESRT----------A 190
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+P + ++Q + PD +R++LY+ +P
Sbjct: 191 PFLIHQESNVIVRAIRDYLRRDIGEILIDNPVVFERAKQHIQLVRPDFVNRIKLYEGEVP 250
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
+F + IE +I + + V LP+GGS+VI+ TEAL SID+N G E+ L
Sbjct: 251 MFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDINSARAT--KGGDIEETALQT 308
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRD+GG++V+DFIDM ++R V ++ AV +DR+ +++ +SR
Sbjct: 309 NLEAAEEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLRDAVRQDRARIQLGRISRF 368
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+RPS+ + C C G G +
Sbjct: 369 GLLEMSRQRLRPSLGESSTHVCPRCLGQGTI 399
>gi|410421219|ref|YP_006901668.1| ribonuclease E [Bordetella bronchiseptica MO149]
gi|408448514|emb|CCJ60197.1| ribonuclease E [Bordetella bronchiseptica MO149]
Length = 1045
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH----VLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|257068982|ref|YP_003155237.1| ribonuclease, Rne/Rng family [Brachybacterium faecium DSM 4810]
gi|256559800|gb|ACU85647.1| ribonuclease, Rne/Rng family [Brachybacterium faecium DSM 4810]
Length = 952
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/332 (39%), Positives = 195/332 (58%), Gaps = 14/332 (4%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L ++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK
Sbjct: 526 LALKSGDPVLVQVTKDPIGHKGARLTSQISLPGRYVVFVPGGSMTGISRKLPDTERARLK 585
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + + PE G+ +RT A G S EEL D+E L + W+ I + KS +
Sbjct: 586 KIMRQIIPEDAGVIVRTAAEGASEEELTHDVERLRAQWEKITKAQKSRS----------A 635
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+ L + + +V+D FNE ++V+ + + EV SY+ D+APDL DRV + P
Sbjct: 636 PVALSQEPDIAIKVVRDVFNEDFTSLIVEGDKVHDEVHSYVSDVAPDLLDRVTRHVPTSP 695
Query: 469 ---LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAI 525
+F K I+E++ + ++V LP+GGSLVI++TEA+ +DVN G G G S E+ +
Sbjct: 696 GKDVFAKHRIDEQLLKAMDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGSLEETV 754
Query: 526 LDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSEL 585
NL AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E+
Sbjct: 755 TKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEV 814
Query: 586 SRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
+ GL+++TRKRV + S C C G G
Sbjct: 815 TSLGLVQMTRKRVGQGLVETFSHSCEHCNGRG 846
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 64 KGSLISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLG 118
K S+I++ F++ + S+ +R IAVLED+ LVE + +VY+G
Sbjct: 422 KRSVITEAEFLARRESVKRSMVVRERPGRTQIAVLEDDVLVEHYVAQKSQTSMVGNVYMG 481
Query: 119 VVTKLVPNMGGAFVNIGNSRPSLM 142
V ++P+M AFV+IG R +++
Sbjct: 482 KVQNVLPSMEAAFVDIGKGRNAVL 505
>gi|218261481|ref|ZP_03476292.1| hypothetical protein PRABACTJOHN_01958 [Parabacteroides johnsonii
DSM 18315]
gi|218223999|gb|EEC96649.1| hypothetical protein PRABACTJOHN_01958 [Parabacteroides johnsonii
DSM 18315]
Length = 526
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 200/329 (60%), Gaps = 14/329 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+ KE + TKGP LT+ R+ +LI D++ VS KI + ER RL+ + +
Sbjct: 122 GQEVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERARLRQLIQ 181
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK-NIMEHAKSAALAADEGVEGAVPIL 411
+++P+ F + +RT + G + EL +L+ LL W+ NI + K A P L
Sbjct: 182 SIKPKNFSVIVRTSSEGKRVAELDHELKTLLKRWEENIPKITKVKA-----------PAL 230
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
++ + +++++D FN + + V+ YH + Y+ IAP + V+ Y +P+FD
Sbjct: 231 IYEETARAVALLRDIFNPSFQNIYVNDADIYHNIRDYVSLIAPGREEIVQRYTGELPIFD 290
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F I ++I ++ + V +G L+IE TEA+ IDVN G+ G ++EK +DVN A
Sbjct: 291 NFAITKQIKSLFGRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKG-SDAQEKTAIDVNTA 349
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GGIIVVDFIDM++ +N++ +YE + KA+ DR+ + LS+ GLM
Sbjct: 350 AADEIARQLRLRDMGGIIVVDFIDMSEAANRQKLYEHMLKAMSGDRAKHNILPLSKFGLM 409
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVE 620
+ITR+RVRP++ SE C C GTG ++
Sbjct: 410 QITRQRVRPAMDVDTSEACPTCFGTGTIK 438
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IAVLED+ LVEL E + +YLG V KL+P + AF+++G + + + HY +
Sbjct: 16 IAVLEDKNLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDVGYKKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK 161
+ P F + K
Sbjct: 73 --LGPNFNTQQK 82
>gi|323526883|ref|YP_004229036.1| Rne/Rng family ribonuclease [Burkholderia sp. CCGE1001]
gi|323383885|gb|ADX55976.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1001]
Length = 1080
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 224/409 (54%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I AA
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGSAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVGKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|427825827|ref|ZP_18992889.1| ribonuclease E [Bordetella bronchiseptica Bbr77]
gi|410591092|emb|CCN06189.1| ribonuclease E [Bordetella bronchiseptica Bbr77]
Length = 1045
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH----VLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|194335205|ref|YP_002016999.1| ribonuclease, Rne/Rng family [Pelodictyon phaeoclathratiforme BU-1]
gi|194307682|gb|ACF42382.1| ribonuclease, Rne/Rng family [Pelodictyon phaeoclathratiforme BU-1]
Length = 562
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 204/341 (59%), Gaps = 14/341 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT-SCDRIGVSRKITG-VERTRLKVIAKTL 354
++VQV+KE + +KG LT+ + RF +L+ ++ VSR++ ER+RLK + +++
Sbjct: 160 ILVQVIKEPISSKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVARKERSRLKKLVRSM 219
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEGFG IRTVA L++DLE LL+ W I E + AA P L+ +
Sbjct: 220 LPEGFGAIIRTVAEDQEETLLKQDLEKLLAKWTQIEEKLQDAA----------PPQLIFK 269
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
S+++D V ++V +S Y E +Y+Q AP++ V Y ++PLF+ +
Sbjct: 270 EDTIISSVLRDSLTSDVTEIVANSQLIYKETLNYIQWAAPEMVKNVTFYQGKLPLFEGYG 329
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
I +++ ++ S++V L +GG ++IE TEA+V +DVN G + +E+ L NL AA+
Sbjct: 330 IAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGR--YAAKREQEENSLKTNLEAAR 387
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
++ R+LRLRDIGGIIVVDFIDM D N + VY+ +K + DR+ + +S G+M+IT
Sbjct: 388 EVVRQLRLRDIGGIIVVDFIDMLDQKNAKKVYDSMKTELRNDRAKSNILPMSDFGIMQIT 447
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
R+R+RPS+ + + C C GTG V+A T+ ++IE+ + +
Sbjct: 448 RERIRPSLMQRMGDQCPACGGTGVVQARFTTINQIERWLRK 488
Score = 40.4 bits (93), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGN 136
+L+N + +Q +A++E+ +LVEL++E +S +YLG V K+V + AFV+IG
Sbjct: 9 LLMNKTGDEIQ-VALVEEGRLVELIIERPESRRSIGDIYLGRVHKVVEGLKAAFVDIGQ 66
>gi|319405672|emb|CBI79295.1| Ribonuclease E [Bartonella sp. AR 15-3]
Length = 865
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 167/558 (29%), Positives = 276/558 (49%), Gaps = 64/558 (11%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AF+
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRIEPSLQAAFIE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRT-----KKQEVNGSASAALEEHAVTYDNDSTSHN 188
G +R + + P R +K +N + A E +
Sbjct: 61 YGGNRHGFLTFAEIHPDYYQIPVADRLALLEEEKAVINENYEDAPIEETTLNKKRLKKNK 120
Query: 189 TEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDH 248
V + ++DL+ EE DD V E+L DF D
Sbjct: 121 NNKVIATNIENDLI------SEEIIADD--VEEIL------------------DFSNDDI 154
Query: 249 HLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGL 306
+ G + E+P ++P+ G + +Q +++ ++VQV+KE
Sbjct: 155 EMVGAEDAL----EELP-----AYPRKQ-------GRQYKIQEVIKRRQILLVQVIKEER 198
Query: 307 GTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTI 363
G KG LT Y L R+ +L+ + R G +SRKIT ++ R RLK I K L+ P G G+ +
Sbjct: 199 GNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNIQDRKRLKDIVKELEVPRGMGVIL 258
Query: 364 RTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIV 423
RT A + E+++D E L+ W I ++ L + P L+H +
Sbjct: 259 RTAGANRTKAEIKRDYEYLMRLWDTI----RTLTLKS------TAPCLIHEESNLIKRSI 308
Query: 424 QDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNML 483
+D +++ + +++V + Y E +++ + P V+ Y P+F NIE +++ ML
Sbjct: 309 RDLYDKNINEILVSGDQGYREAKDFMRMLIPSHAKVVQPYRDTTPIFTHHNIETQLDKML 368
Query: 484 SKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLR 543
+V L +GG LVI QTEALV+IDVN G H S EK L NL AA++IAR+LRLR
Sbjct: 369 HPQVNLKSGGYLVINQTEALVAIDVNSGRSTKEH--SVEKTALQTNLEAAEEIARQLRLR 426
Query: 544 DIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVT 603
D+ G+IV+DFIDM ++ N +LV +++K +++DR+ ++V +S GLME++R+R+R SV
Sbjct: 427 DLAGLIVIDFIDMLENRNIKLVEKKLKDCLKQDRARIQVGHISHFGLMEMSRQRIRVSVL 486
Query: 604 FMISEPCTCCQGTGRVEA 621
++PC C GTG + +
Sbjct: 487 ESTTQPCPHCAGTGNIRS 504
>gi|358445548|ref|ZP_09156148.1| putative ribonuclease [Corynebacterium casei UCMA 3821]
gi|356608503|emb|CCE54412.1| putative ribonuclease [Corynebacterium casei UCMA 3821]
Length = 1394
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/351 (37%), Positives = 202/351 (57%), Gaps = 23/351 (6%)
Query: 284 GEKTWLQ-------------VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSC 330
GE W Q ++ G +V+VQV K+ +G KGP LT L RF + +
Sbjct: 560 GEVNWRQAGLGGRSRKIEQAMKSGDQVLVQVAKDPVGHKGPRLTTQISLPGRFLVYVPGG 619
Query: 331 DRIGVSRKITGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIM 390
G+SRK+ ER RL+ I + + P+ G IRT A + E + D+ L W +I
Sbjct: 620 RNAGISRKLPAPERKRLREILEKVVPDQGGAIIRTAAENVAEEAIAADVNRLHDRWNDIQ 679
Query: 391 EHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQ 450
E AK ++ +G+ P+ L+ + +V+D FNE ++VVD R + V+SY+
Sbjct: 680 ESAKK-----EKSSKGSDPVALYEEPQMLVKVVRDLFNEDFDRLVVDGERPFEVVSSYVN 734
Query: 451 DIAPDLCDRVELYDKR----IPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+AP+L DRV YD+ + F+ + I+E++ LS++V LP+GG+LVI++TEA+ I
Sbjct: 735 RLAPELADRVFKYDRSENGGVDAFETYRIDEQLQKALSRKVWLPSGGTLVIDRTEAMTVI 794
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G G G + E+ + NL AA+++ R++RLRD+GG+IVVDFIDM N+ LV
Sbjct: 795 DVNTGK-FTGTGGNLEETVTKNNLEAAEEVVRQMRLRDLGGMIVVDFIDMVLPENQELVL 853
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
+K+A+ RDR+ +VSE++ GL+++TRKR+ + S C CQG G
Sbjct: 854 RRLKEALGRDRTRHQVSEVTSLGLVQMTRKRLGSGLLETFSTECEACQGRG 904
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 86 TMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
T+ ++ VLED LVE + + ++YLG V ++P+M AF++IG R ++
Sbjct: 501 TITQVGVLEDGMLVEHFVTDETNTSSIGNIYLGRVQNVLPSMEAAFIDIGTGRNGVL 557
>gi|237746017|ref|ZP_04576497.1| ribonuclease E protein [Oxalobacter formigenes HOxBLS]
gi|229377368|gb|EEO27459.1| ribonuclease E protein [Oxalobacter formigenes HOxBLS]
Length = 988
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/366 (35%), Positives = 209/366 (57%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G +V+VQV KE G KG LT + L R+ +L+ + R G VSR++ G ER L+
Sbjct: 93 LSEGQEVMVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G + RT G ++EELQ DL LL W N +E A S+A A
Sbjct: 153 TMDKLDVPPGMSIIARTAGIGRTVEELQWDLNYLLQLW-NAIESAGSSAPGA-------- 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L++ + ++DYF + ++++D+ Y + ++ + PD+ +RV+ Y +P
Sbjct: 204 -FLIYHESSLVIRAIRDYFQPDIGEILIDTDEIYEQARQFMSYVMPDMANRVKRYRDGVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I + S+ V LP+GGS+VI+ TEALV+IDVN G+ E
Sbjct: 263 LFSRFQIEHQIESAYSRVVSLPSGGSIVIDHTEALVAIDVNSARST--RGTDIETTAFTT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA+++AR+LRLRD+GG+IV+DFIDM N+R + +K+A+ DR+ V++ +++R
Sbjct: 321 NCEAAEEVARQLRLRDLGGLIVIDFIDMESPKNRREIETRLKEALHYDRARVQMDKITRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RPS++ C C GTG + E+S + + R++ +S +S+
Sbjct: 381 GLMELSRQRLRPSLSEGSHITCPRCNGTGHIRDTESSALQ----VLRIIEEESMKESSAV 436
Query: 649 FIRHIP 654
IP
Sbjct: 437 IHVQIP 442
Score = 40.0 bits (92), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y V+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIESNARELHKSNIYKAVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|255020146|ref|ZP_05292216.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Acidithiobacillus caldus ATCC 51756]
gi|254970439|gb|EET27931.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Acidithiobacillus caldus ATCC 51756]
Length = 509
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 214/363 (58%), Gaps = 17/363 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
+ +G +V+VQV+K+ +G+KG L+ L R+ + + R+GVS +I ER RLK
Sbjct: 115 LHEGQEVVVQVIKDPVGSKGARLSTRITLPGRYLVYMPYVPRLGVSSRIEDPGERERLKG 174
Query: 350 IAKTLQP--EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA 407
I K + P E G IRT+A G E+ DL+ L W+++ E SA
Sbjct: 175 ILKAMIPADEDGGYIIRTLAEGTEAEDFASDLDFLGRLWQSVHEQVASAR---------- 224
Query: 408 VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI 467
P L+H+ + L +++D ++ ++++ +DS T+ + ++ P++ +R+E Y
Sbjct: 225 APQLIHQDLNLALRVMRDVMSDDIQRVRIDSRETFEAARQFCAEVIPEVVERIEHYAGDR 284
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
PLFD +N+E+EI L RV L +G L+I+QTEAL ++DVN G F ++E+ IL
Sbjct: 285 PLFDLYNVEDEIERALQSRVTLKSGAYLIIDQTEALTTVDVNTG--AFVGRRNQEETILK 342
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
NL AA IAR+LRLR+IGG+I++DFIDM D+ +KR V+ ++KA++ D + ++++S
Sbjct: 343 TNLEAAAAIARQLRLRNIGGMIIIDFIDMEDEEHKRRVHRALEKALQSDHTRCSITQISA 402
Query: 588 HGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTF 647
GL+E+TRKR R S+ ++ EPC C G G ++ ET +I +EI R +++Y F
Sbjct: 403 LGLVEMTRKRTRESLRQILCEPCPYCHGRGFMKTAETICYEILREIVR--ETRAYPAERF 460
Query: 648 YFI 650
+
Sbjct: 461 VVL 463
>gi|167837372|ref|ZP_02464255.1| ribonuclease E [Burkholderia thailandensis MSMB43]
Length = 559
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/405 (35%), Positives = 222/405 (54%), Gaps = 29/405 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ ++ EP EA F ++ E H GF P K EV Q K+
Sbjct: 40 NIYKGVVTRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFKEGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
ER L+ LQ P+G + RT G S EELQ DL LL W+ I AA
Sbjct: 145 DERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ Y + +++ + PD +V
Sbjct: 197 SQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ ++SR GLME++R+R+RP+++ C C GTG + E+S
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESS 419
Score = 42.4 bits (98), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|381150268|ref|ZP_09862137.1| ribonuclease, Rne/Rng family [Methylomicrobium album BG8]
gi|380882240|gb|EIC28117.1| ribonuclease, Rne/Rng family [Methylomicrobium album BG8]
Length = 747
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/450 (31%), Positives = 241/450 (53%), Gaps = 39/450 (8%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
DFD+ K N+ II EP EA F ++ E +GF P K P
Sbjct: 26 DFDIEVPSKEQKKSNIYKGIITRVEPSLEAAFVNY-------GAEKHGFLPFKEISP--- 75
Query: 269 HTSHPQGTKDSKHTPGEKTWL--QVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWIL 326
++ Q ++ + G + + Q+++G +++VQ+ KE G KG LT Y L + +L
Sbjct: 76 --AYRQSAEEGESEGGGRKSIKNQLKEGQEILVQIEKEERGNKGAALTTYISLAGTYLVL 133
Query: 327 ITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLS 384
+ + + G +SR+I G R+ L+ + L+ P+ GL +RT G + EELQ DL L+
Sbjct: 134 MPNNPKAGGISRRIEGDTRSELREVMAALEIPDSMGLIVRTAGCGKNAEELQWDLNYLMQ 193
Query: 385 TWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHE 444
W+ I + E P L+ + + ++D+ + ++++D+ +++
Sbjct: 194 LWEAIERSS----------TEQTAPFLVFQESNVIIRALRDHLRGNIDEILIDNEESFNL 243
Query: 445 VTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALV 504
V S+++ + P + +LY +PLF ++ IE +I + VPLP+GG+LVI+ TEAL
Sbjct: 244 VKSFMKQVMPHFLPKAKLYQDSVPLFSRYQIESQIELAYGREVPLPSGGALVIDHTEALT 303
Query: 505 SIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRL 564
SID+N GS E+ L+ NL A +IAR+LRLRD GG+ V+DFIDM N+R
Sbjct: 304 SIDINSARAT--KGSDIEETALNTNLEACDEIARQLRLRDSGGLFVIDFIDMMSSKNQRA 361
Query: 565 VYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
V +++A++ DR+ +++ +SR GL+E++R+R+RPS+ PC C+G G + +E+
Sbjct: 362 VENRLREALKIDRARIQIGRISRFGLLEMSRQRMRPSLGESTQLPCPRCKGQGTIRNVES 421
Query: 625 SFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
+ + R++ ++ + T I H+P
Sbjct: 422 ----VALSVLRIIEEEAMKKGTEKVIAHLP 447
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ +KL + +E + ++Y G++T++ P++ AFVN G
Sbjct: 4 MLINATQAEELRVALVDGQKLYDFDIEVPSKEQKKSNIYKGIITRVEPSLEAAFVNYGAE 63
Query: 138 RPSLMDIKHYREPFIFPPFR 157
+ + K I P +R
Sbjct: 64 KHGFLPFKE-----ISPAYR 78
>gi|427818315|ref|ZP_18985378.1| ribonuclease E [Bordetella bronchiseptica D445]
gi|410569315|emb|CCN17408.1| ribonuclease E [Bordetella bronchiseptica D445]
Length = 873
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH----VLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|384083484|ref|ZP_09994659.1| ribonuclease, Rne/Rng family protein [gamma proteobacterium HIMB30]
Length = 985
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/424 (33%), Positives = 234/424 (55%), Gaps = 40/424 (9%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQK--- 293
EA F DF E +GF P K P+ + +TP E +++ K
Sbjct: 54 EAAFIDF-------GSERHGFLPLKEISPEYFY-----------NTPAEGERVKIDKVLK 95
Query: 294 -GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLK-VI 350
G ++I+QV KE GTKG LT Y L R+ +L+ + D G+SR+I G +R L+ +
Sbjct: 96 EGQELIIQVEKEERGTKGAALTTYISLAGRYLVLMPNNPDAGGISRRIEGDDRAELRDKL 155
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
A +G G+ IRT G ++EELQ DL+ L + W+ I + AAL+ G P
Sbjct: 156 ANLTITQGAGVIIRTAGVGRTVEELQWDLDYLDTAWQAI----RKAALS------GVAPF 205
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L+++ + ++D+ + + +++VD+ + + + +Q + P ++V+LY PLF
Sbjct: 206 LIYQESNVIVRAIRDHLRQDIGEVLVDNVQVFEKAKDLVQQVMPSYGNKVKLYQDETPLF 265
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++F +E +I + + V LP+GG++VI+ TEALVSID+N G E+ L NL
Sbjct: 266 NRFQVEGQIESAFQREVRLPSGGAIVIDPTEALVSIDINSARAT--KGGDIEETALHTNL 323
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA +IAR+LRLRD+GG++V+DFIDM+ + N++ V +K A++ DR+ V++ +SR GL
Sbjct: 324 EAADEIARQLRLRDMGGLVVIDFIDMSANKNQKAVENRLKDALKSDRARVQIGRISRFGL 383
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFI 650
+E++R+R+RPS+ C C G G + +++ + +I RLL + + T
Sbjct: 384 LEMSRQRLRPSLGETSGVVCPRCHGQGSIRDVQS----LALQILRLLEDEVVKERTGEVR 439
Query: 651 RHIP 654
+P
Sbjct: 440 VQVP 443
>gi|407716440|ref|YP_006837720.1| ribonuclease E [Cycloclasticus sp. P1]
gi|407256776|gb|AFT67217.1| Ribonuclease E [Cycloclasticus sp. P1]
Length = 855
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/367 (34%), Positives = 210/367 (57%), Gaps = 18/367 (4%)
Query: 290 QVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLK 348
Q+++G +++VQV KE G KG LT L + +L+ + G+SR+I G RT L+
Sbjct: 90 QIKEGLEIVVQVEKEERGNKGAALTTQISLAGSYLVLMPNNPGSGGISRRIDGDNRTALR 149
Query: 349 VIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA 407
+ L+ PE GL +RT G S+EELQ DL L W I +LA+ +
Sbjct: 150 EVLDQLEIPENIGLIVRTAGVGKSVEELQWDLNYLTHLWDAI-------SLASKDR---K 199
Query: 408 VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI 467
P L+ + + ++DY + ++++DS +++ ++Q I P RV+LY+ +
Sbjct: 200 APYLIFQESNFVIRSIRDYLRADIDEVLIDSEASFNLAHDFMQQIMPQYLSRVKLYEDSV 259
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
PLF ++ IE +I + VPLP+GGS+VI+ TEAL SID+N G+ E L+
Sbjct: 260 PLFTRYQIESQIETAYGREVPLPSGGSIVIDPTEALTSIDINSARAT--KGADFETTALN 317
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
+NL AA +IAR+LR+RD+GG+ V+DFIDM N+R+V +K+A++ DR+ ++ S +SR
Sbjct: 318 INLEAADEIARQLRIRDMGGLFVIDFIDMGPTKNQRMVENRIKEAMKHDRARIQFSRISR 377
Query: 588 HGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTF 647
GL+E++R+R+ S+T C C G G + ++E+ + I R+L ++ + T
Sbjct: 378 FGLLEMSRQRIHSSLTESSLPVCPRCHGQGTIRSVES----LSLSIIRILEEEAMKEHTA 433
Query: 648 YFIRHIP 654
+ H+P
Sbjct: 434 RVVVHVP 440
>gi|345015145|ref|YP_004817499.1| Rne/Rng family ribonuclease [Streptomyces violaceusniger Tu 4113]
gi|344041494|gb|AEM87219.1| ribonuclease, Rne/Rng family [Streptomyces violaceusniger Tu 4113]
Length = 1362
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/327 (38%), Positives = 195/327 (59%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 769 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQI 828
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S +EL +D+ L + W+ I + +KS G P
Sbjct: 829 LKKIVPEDAGVIVRTAAEGASEDELSRDVARLQAQWEEIKKKSKS----------GNAPS 878
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + + Y+ +APDL DR++ + + +F
Sbjct: 879 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDDAWETIHGYVSHVAPDLADRLQRWTSDVDVF 938
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E++ L ++V LP+GGSLVI++TEA++ IDVN G G G + E+ + NL
Sbjct: 939 ATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMIVIDVNTGK-FTGQGGNLEETVTRNNL 997
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 998 EAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 1057
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 1058 VQMTRKRVGQGLLESFSESCVHCNGRG 1084
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ + Q I VLED+ LVE + ++ +VYLG V ++P+
Sbjct: 672 FLARREAVERVMVVRQNGDRTQ-IGVLEDDVLVEHFVNKEQATSYVGNVYLGKVQNVLPS 730
Query: 127 MGGAFVNIGNSRPSLM 142
M AFV+IG R +++
Sbjct: 731 MEAAFVDIGKGRNAVL 746
>gi|336451796|ref|ZP_08622233.1| ribonuclease, Rne/Rng family [Idiomarina sp. A28L]
gi|336281609|gb|EGN74889.1| ribonuclease, Rne/Rng family [Idiomarina sp. A28L]
Length = 489
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 214/358 (59%), Gaps = 15/358 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKV 349
V++G ++VQVVK+ LGTKG LT + SR+ +L+ + +GVS++I + ER RL+
Sbjct: 97 VRQGQHIVVQVVKDPLGTKGARLTTDITIPSRYLVLMPRSNHVGVSQRIESESERDRLRS 156
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ E G +RT A G EEL++D L W+ I E K A +G V
Sbjct: 157 VVTKFSDENLGFIVRTAAEGARKEELEQDALFLRKLWEKIQERKKKNA-------KGGV- 208
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L+ + I++D+ +++++ VDS ++ ++ ++++ P L R+E Y+ P+
Sbjct: 209 --LYEDLNIAARILRDFVGVEIERIRVDSRLSFQQLHEFVEEFVPQLAPRLEYYEGERPI 266
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD F++E EI L +RV L +GG+LVI+QTEA+ +ID+N G GH + E+ I + N
Sbjct: 267 FDLFDVENEIQRALDRRVQLKSGGTLVIDQTEAMTTIDINTG-AFVGH-RNLEETIFNTN 324
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
A + IAR+LRLR++GGII+VDFIDM ++ +KR V ++ A+ +DR+ +S + G
Sbjct: 325 TEATQAIARQLRLRNLGGIIIVDFIDMQNEDHKRRVLHSLELALAKDRAKTSISGFTSLG 384
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTF 647
L+E+TRKR R S+ ++S C C+G G ++ +ET +I +EI R V+++Y F
Sbjct: 385 LVELTRKRTRESLEHVLSCECPVCKGRGSMKTVETVCYEIMREIVR--VNRAYAADKF 440
>gi|172060046|ref|YP_001807698.1| ribonuclease [Burkholderia ambifaria MC40-6]
gi|171992563|gb|ACB63482.1| ribonuclease, Rne/Rng family [Burkholderia ambifaria MC40-6]
Length = 1059
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNAGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|424776490|ref|ZP_18203471.1| ribonuclease E [Alcaligenes sp. HPC1271]
gi|422888310|gb|EKU30699.1| ribonuclease E [Alcaligenes sp. HPC1271]
Length = 1113
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 207/364 (56%), Gaps = 18/364 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G ++I+QV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 95 EGQELIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELREAM 154
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L P+G + RT G S+EELQ DL L+ W I A+ + A PI
Sbjct: 155 DQLDIPQGMSIIARTAGIGRSVEELQWDLNYLMQLWTAIDGAAR----------DNAAPI 204
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L++ + ++DYF+ + ++++D+ + + +++ + PD RV++Y IPLF
Sbjct: 205 LIYLESSLVIRAIRDYFSPDIGEILIDTDEIHEQAAAFMSVVMPDNLHRVKMYRDDIPLF 264
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+F IE +I S+ V LP+GG++VI+ TEALV+IDVN G+ E+ L N
Sbjct: 265 SRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAIDVNSARST--RGADIEETALRTNQ 322
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR GL
Sbjct: 323 EAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHLDRARVQMGKISRFGL 382
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFI 650
ME++R+R+RP++ C C GTG + E+S + RLL ++ + T
Sbjct: 383 MELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSALH----VLRLLQEEAMKEGTAALH 438
Query: 651 RHIP 654
+P
Sbjct: 439 AQVP 442
Score = 39.7 bits (91), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FV+ G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSYGEE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|423350548|ref|ZP_17328201.1| rne/Rng family ribonuclease, partial [Turicella otitidis ATCC
51513]
gi|404387447|gb|EJZ82565.1| rne/Rng family ribonuclease, partial [Turicella otitidis ATCC
51513]
Length = 954
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 128/332 (38%), Positives = 195/332 (58%), Gaps = 10/332 (3%)
Query: 292 QKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIA 351
+ G + +VQV K G KG LT + L RF + GVS K+ ER RLK +
Sbjct: 570 KNGDQALVQVTKNPSGHKGARLTGHVSLAGRFLVYTPGGSTAGVSHKLPAGERNRLKKVV 629
Query: 352 KTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
K L PEG G +RT A G +E+ D++ + W +I AK + +GA P+
Sbjct: 630 KGLVPEGDGAIVRTAAEGVDEQEIGADIQRITRLWDDIERRAKK-----ERSSKGAKPVA 684
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI---- 467
L+ + +V+D FNE V ++VVD R+++ V +Y+Q +A L DR+E YD+
Sbjct: 685 LYEEPDLLVKVVRDLFNESVDRLVVDGRRSWNTVNAYVQSVAGSLSDRLERYDRGAHGGR 744
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
F++ NI+E+I L + V LP+GGSLVI++TEA+ IDVN G G G + E+ +
Sbjct: 745 DAFEELNIDEQIEEALQRVVYLPSGGSLVIDRTEAMTVIDVNTGR-FTGSGGNLEETVTR 803
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
NL AA++I R+LRLRD+GG++V+DFIDM + N+ LV + + +E DR+ +VSE++
Sbjct: 804 NNLEAAEEIVRQLRLRDVGGMVVIDFIDMVLEENQDLVLRRLNEELELDRTRHQVSEVTS 863
Query: 588 HGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+++TRK++ + S+PC C+G G V
Sbjct: 864 LGLVQLTRKKISTGLLETFSKPCEACEGRGLV 895
>gi|253998974|ref|YP_003051037.1| Rne/Rng family ribonuclease [Methylovorus glucosetrophus SIP3-4]
gi|253985653|gb|ACT50510.1| ribonuclease, Rne/Rng family [Methylovorus glucosetrophus SIP3-4]
Length = 913
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 196/337 (58%), Gaps = 14/337 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV K+ G KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 92 LKEGQELIVQVDKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEDRNELRD 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P G + RT G ++EELQ DL LL W I A G
Sbjct: 152 LMAQLEVPNGMSIIARTAGIGRNIEELQWDLNYLLQLWTAI-----EGASTMQSG----- 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DYF + ++++D+ + + ++ + P RV+LY IP
Sbjct: 202 PFLIYQEGSLVIRAIRDYFQPDIGEILIDTADIHEQAVQFMNHVMPGNVSRVKLYRDEIP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALVS+DVN G GS E +
Sbjct: 262 LFSRFQIEHQIETAFSREVRLPSGGAIVIDHTEALVSVDVNSGRST--KGSDIEHTAFNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG++V+DFIDM + N+R V ++ A+ DR+ V+ ++SR
Sbjct: 320 NLEAADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRLRDALHHDRARVQTGKISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GL+E++R+R+RPS+ PC C GTG + +E++
Sbjct: 380 GLLELSRQRLRPSLGESNHIPCPRCHGTGHIRGIEST 416
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y G++T++ P++ AFVN G
Sbjct: 4 MLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNYGTD 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|162455546|ref|YP_001617913.1| ribonuclease G [Sorangium cellulosum So ce56]
gi|161166128|emb|CAN97433.1| ribonuclease G [Sorangium cellulosum So ce56]
Length = 907
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/359 (36%), Positives = 216/359 (60%), Gaps = 15/359 (4%)
Query: 279 SKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRK 338
SK TP + V++G +VIVQV KE +GTKG +T++ L R+ + + + D IG+S++
Sbjct: 503 SKSTPIREV---VREGQEVIVQVSKEPIGTKGARVTSHISLPGRYVVYLPTVDHIGISKR 559
Query: 339 I-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAA 397
I + ER+RL+ + ++P GL +RT+A G + ++L+ D+ L+ W + + +S
Sbjct: 560 IGSEKERSRLRDAIEAMKPPQGGLIVRTLAEGLTKKQLKADVGYLVRLWGEVAKKRESGV 619
Query: 398 LAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLC 457
A P +L+ + L +D F + ++K+V+D Y + +++ P+
Sbjct: 620 RA---------PAVLYTELDLVLKTARDLFTDDIEKIVIDDREEYIRLRRFVEMFMPERA 670
Query: 458 DRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGH 517
D VELY+ P+FD + IE+EI LS++VPLP+GG L+I+Q EAL +IDVN G G
Sbjct: 671 DAVELYEGTEPIFDAYGIEDEIQRALSRKVPLPSGGHLIIDQAEALTAIDVNTGR-FVGK 729
Query: 518 GSSK-EKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERD 576
GS E+ IL NL A ++IA +LR R+IGG+I++D IDM N+ V +++ + RD
Sbjct: 730 GSKDLEETILTTNLEAVEEIAYQLRFRNIGGLIILDLIDMERAQNREKVRRRLEELLSRD 789
Query: 577 RSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
++ ++ +S GL+E+TRKR R S+ I EPC C GTG++++ +T +I ++I R
Sbjct: 790 KAKTTLNRISDLGLIEMTRKRTRESLGRTILEPCFYCDGTGQLQSKQTVAYEILRQIRR 848
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 8/158 (5%)
Query: 76 TVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIG 135
+++IN I R+A++E+ + EL LE S ++YLG V++++P M AF+++G
Sbjct: 4 NLLVINVDIRET-RVALIENGIIAELHLERESSKGTLGNIYLGKVSRVLPGMQAAFIDVG 62
Query: 136 NSRPSLMDIKHYREPFIFPPFRC---RTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDV 192
R + + ++ P F + RT ++E S A ++S H
Sbjct: 63 LERAAFLHVEDLIRPDDFEAYLAGHRRTVEEERASSRGRAARGSEAPRPDESEVHELSGA 122
Query: 193 AEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSI 230
A DL H E +G DF E + GS+
Sbjct: 123 EAAPESPDLTPGRH---ELREGADFGAEEGF-DAGGSV 156
>gi|429207055|ref|ZP_19198315.1| Ribonuclease E [Rhodobacter sp. AKP1]
gi|428190050|gb|EKX58602.1| Ribonuclease E [Rhodobacter sp. AKP1]
Length = 889
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 170/555 (30%), Positives = 279/555 (50%), Gaps = 42/555 (7%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LI+++ R+ V++ K+ E E V ++YL VT++ P++ AFV+ G +
Sbjct: 5 MLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 64
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAAL--EEHAVTYDNDSTSHNTEDVAEA 195
R + + P R E + + A E+H + + +A
Sbjct: 65 RHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAASGDA 124
Query: 196 DSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGS---IIDDGEPEA---DFEDFLEGDHH 249
D+ + D E G D L +GS D G+PEA D + + DH
Sbjct: 125 VQSGDVAGMDVVDLGEETGAD-----ALYETDGSDAGAADSGQPEASDADEKPYRAMDHA 179
Query: 250 LDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKV----IVQVVKEG 305
DG+ + +V ++ P+ + ++ ++Q+ KV +VQVVKE
Sbjct: 180 SDGDDEIESVADEDVAEE--IPAPRKPRSRRY--------KIQEVIKVRQIMLVQVVKEE 229
Query: 306 LGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT-GVERTRLKVIAKTLQ-PEGFGLT 362
G KG LT Y L R+ +L+ + R G +SRKIT +R +LK IA L+ PEG GL
Sbjct: 230 RGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLI 289
Query: 363 IRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSI 422
IRT A + +E+++D E LL W+ I D ++ P ++
Sbjct: 290 IRTAGAKRTKQEIRRDYEYLLRLWEQIR----------DLTLKSVAPAPIYEEGDLIKRT 339
Query: 423 VQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNM 482
++D FN ++++++V+ Y +++ I P +V YD+ +PLF ++ +E ++ M
Sbjct: 340 IRDLFNREIEEVLVEGETGYRTAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGM 399
Query: 483 LSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRL 542
+ V L +GG +VI TEALV+IDVN G GS +E A L NL AA+++AR+LRL
Sbjct: 400 FNPVVQLKSGGYIVIGVTEALVAIDVNSGRAT-KEGSIEETA-LKTNLEAAEEVARQLRL 457
Query: 543 RDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSV 602
RD+ G+IV+DFIDM + N V + +K ++ DR+ ++V +S GLME++R+R+RP +
Sbjct: 458 RDLAGLIVIDFIDMEERKNNAAVEKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGM 517
Query: 603 TFMISEPCTCCQGTG 617
++PC C GTG
Sbjct: 518 LESTTQPCAHCHGTG 532
>gi|326798547|ref|YP_004316366.1| ribonuclease, Rne/Rng family [Sphingobacterium sp. 21]
gi|326549311|gb|ADZ77696.1| ribonuclease, Rne/Rng family [Sphingobacterium sp. 21]
Length = 517
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 205/340 (60%), Gaps = 12/340 (3%)
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPE 357
VQ+ KE + TKGP L++ + RF +L+ D + +S+KI + ER RLK I + ++P+
Sbjct: 125 VQIAKEPISTKGPRLSSDLSIAGRFVVLVPFSDAVSISKKIKSNTERNRLKKIVEGIKPQ 184
Query: 358 GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMG 417
FG+ IRTV+ G + EL+KDL L++ W++ + S + A IL M
Sbjct: 185 NFGVIIRTVSEGKGVAELEKDLRDLITKWESFTKRLAST--------DPAKKIL--GEMD 234
Query: 418 QTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEE 477
+T +I++D ++ + ++ P Y E SY+Q+I+PDL V+LY + P+F+ F IE+
Sbjct: 235 RTSTILRDILTDEFSHIYINDPIIYEETKSYIQEISPDLEKIVKLYKHKDPIFEHFGIEK 294
Query: 478 EINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIA 537
+I K V L G LVIE TEAL IDVN G+ + ++ A+L VN AAK+IA
Sbjct: 295 QIKAAFGKIVNLQGGAYLVIEHTEALHVIDVNSGNRTANKENQEDNALL-VNKEAAKEIA 353
Query: 538 RELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
R+LRLRD+GGI+VVDFIDM +N++ +++ +K+ + DR+ + S+ GL++ITR+R
Sbjct: 354 RQLRLRDMGGIVVVDFIDMHKPTNRKELHDYLKECMGNDRAKHTILPPSKFGLVQITRQR 413
Query: 598 VRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
VRP +T + +E C C GTG + A IE +S +L
Sbjct: 414 VRPEMTVVTNEKCPACGGTGEIRASIVLMDDIESNLSYVL 453
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
++++SS T IA+L+D++LVEL E V +N +YLG + K++P + AFV++G S
Sbjct: 5 LIVDSSPETGTTIALLQDKQLVELNKEQVNNNYAVGDIYLGRIKKIMPGLNAAFVDVGYS 64
Query: 138 RPSLMDIKHY 147
+ + + HY
Sbjct: 65 KDAFL---HY 71
>gi|313201078|ref|YP_004039736.1| Rne/Rng family ribonuclease [Methylovorus sp. MP688]
gi|312440394|gb|ADQ84500.1| ribonuclease, Rne/Rng family [Methylovorus sp. MP688]
Length = 913
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 196/337 (58%), Gaps = 14/337 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV K+ G KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 92 LKEGQELIVQVDKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEDRNELRD 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P G + RT G ++EELQ DL LL W I A G
Sbjct: 152 LMAQLEVPNGMSIIARTAGIGRNIEELQWDLNYLLQLWTAI-----EGASTMQSG----- 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++DYF + ++++D+ + + ++ + P RV+LY IP
Sbjct: 202 PFLIYQEGSLVIRAIRDYFQPDIGEILIDTADIHEQAVQFMNHVMPGNVSRVKLYRDEIP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALVS+DVN G GS E +
Sbjct: 262 LFSRFQIEHQIETAFSREVRLPSGGAIVIDHTEALVSVDVNSGRST--KGSDIEHTAFNT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG++V+DFIDM + N+R V ++ A+ DR+ V+ ++SR
Sbjct: 320 NLEAADEVARQLRLRDLGGLVVIDFIDMENQRNQREVENRLRDALHHDRARVQTGKISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GL+E++R+R+RPS+ PC C GTG + +E++
Sbjct: 380 GLLELSRQRLRPSLGESNHIPCPRCHGTGHIRGIEST 416
Score = 45.8 bits (107), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y G++T++ P++ AFVN G
Sbjct: 4 MLFNATQSEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKGIITRIEPSLEAAFVNYGTD 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|254435343|ref|ZP_05048850.1| ribonuclease, Rne/Rng family protein [Nitrosococcus oceani AFC27]
gi|207088454|gb|EDZ65726.1| ribonuclease, Rne/Rng family protein [Nitrosococcus oceani AFC27]
Length = 761
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 223/404 (55%), Gaps = 28/404 (6%)
Query: 255 NGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPT 312
GF P K EV SH QG G++ +Q +++G +++VQV KE G KG
Sbjct: 62 QGFLPLK-EVTRSYFQSH-QGES------GDRPKVQDVLKEGQELVVQVEKEERGNKGAA 113
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
L+ + L R+ +L+ + R G VSR+I G ER+ L +TL+ PEG GL RT A G
Sbjct: 114 LSTFISLAGRYLVLMPNNPRAGGVSRRIEGEERSMLLEAMRTLEIPEGMGLITRTAAVGK 173
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ EELQ DL LL W +I AA EG P L+++ + ++DY
Sbjct: 174 NAEELQWDLNYLLHLWHSIQ--------AAAEGR--PAPFLIYQESDVIIRALRDYLRLD 223
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++D+P Y +++ + P +++LY ++ LF +F IE +I V LP
Sbjct: 224 IGEILIDTPDVYQRAYDFMRQVMPPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALP 283
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG++V++ TEAL +ID+N G E+ L NL AA++IAR+LRLRD+GG+IV
Sbjct: 284 SGGAIVVDYTEALTTIDINSARA--NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIV 341
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDMA N+R V +++ + DR+ V+V +SR GL+E++R+R+RPS+ C
Sbjct: 342 IDFIDMAPLRNQRAVENRLRECLREDRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVC 401
Query: 611 TCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
C G G+V +E+ + + RL+ + + T + +P
Sbjct: 402 PRCNGRGQVRGVES----LGLSVLRLIEEGAAKEKTARMVIQLP 441
>gi|293603990|ref|ZP_06686403.1| ribonuclease E [Achromobacter piechaudii ATCC 43553]
gi|292817594|gb|EFF76662.1| ribonuclease E [Achromobacter piechaudii ATCC 43553]
Length = 1032
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 212/366 (57%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P+G + RT G ++EELQ DL LL W I A+ + +
Sbjct: 153 TMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQLWTAIDGAAR----------DNSA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALVS+DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSAL----HVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFI 152
R + K F
Sbjct: 64 RHGFLPFKEVARSFF 78
>gi|77166294|ref|YP_344819.1| ribonuclease E and G [Nitrosococcus oceani ATCC 19707]
gi|76884608|gb|ABA59289.1| RNAse E [Nitrosococcus oceani ATCC 19707]
Length = 764
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/404 (34%), Positives = 223/404 (55%), Gaps = 28/404 (6%)
Query: 255 NGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPT 312
GF P K EV SH QG G++ +Q +++G +++VQV KE G KG
Sbjct: 65 QGFLPLK-EVTRSYFQSH-QGES------GDRPKVQDVLKEGQELVVQVEKEERGNKGAA 116
Query: 313 LTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
L+ + L R+ +L+ + R G VSR+I G ER+ L +TL+ PEG GL RT A G
Sbjct: 117 LSTFISLAGRYLVLMPNNPRAGGVSRRIEGEERSMLLEAMRTLEIPEGMGLITRTAAVGK 176
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ EELQ DL LL W +I AA EG P L+++ + ++DY
Sbjct: 177 NAEELQWDLNYLLHLWHSIQ--------AAAEGR--PAPFLIYQESDVIIRALRDYLRLD 226
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ ++++D+P Y +++ + P +++LY ++ LF +F IE +I V LP
Sbjct: 227 IGEILIDTPDVYQRAYDFMRQVMPPELRKLKLYQDKVSLFTRFQIESQIETAFQHEVALP 286
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG++V++ TEAL +ID+N G E+ L NL AA++IAR+LRLRD+GG+IV
Sbjct: 287 SGGAIVVDYTEALTTIDINSARA--NKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIV 344
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDMA N+R V +++ + DR+ V+V +SR GL+E++R+R+RPS+ C
Sbjct: 345 IDFIDMAPLRNQRAVENRLRECLREDRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVC 404
Query: 611 TCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFIRHIP 654
C G G+V +E+ + + RL+ + + T + +P
Sbjct: 405 PRCNGRGQVRGVES----LGLSVLRLIEEGAAKEKTARMVIQLP 444
>gi|258651734|ref|YP_003200890.1| ribonuclease, Rne/Rng family [Nakamurella multipartita DSM 44233]
gi|258554959|gb|ACV77901.1| ribonuclease, Rne/Rng family [Nakamurella multipartita DSM 44233]
Length = 1080
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/334 (39%), Positives = 197/334 (58%), Gaps = 15/334 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
+ G ++ QV K+ +G KG LT L RF + + G+SRK+ ER RLK I
Sbjct: 456 LSSGDTILAQVSKDPVGHKGARLTTQISLPGRFLVYVPGGGATGISRKLPDTERKRLKAI 515
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ PE G+ IRT A G S EEL +D+E L + W+ I A++ +G+ P
Sbjct: 516 LDRIVPEDAGVIIRTAAEGVSEEELARDVERLKAQWEEISRRAQA---------KGSAPT 566
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVD----SPRTYHEVTSYLQDIAPDLCDRVELYD-K 465
LL+ G + +V+D FN + ++VVD + + V+ Y+ +AP+L DR+ +D
Sbjct: 567 LLYAEPGTLIKVVRDLFNSDINRLVVDGDAGNDTVWGPVSDYVNAVAPELADRLVRWDHD 626
Query: 466 RIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAI 525
+F + I+E+I L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ +
Sbjct: 627 GQDVFANYRIDEQIAKALERKVHLPSGGSLVIDRTEAMTVVDVNTGK-YTGSGGNLEETV 685
Query: 526 LDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSEL 585
NL AA++I R+LRLRDIGGIIVVDFIDM +SN+ LV + +A+ RDR+ +V+E+
Sbjct: 686 TKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRELVMRRLTEALGRDRTRHQVAEV 745
Query: 586 SRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
+ GL+++TRKR+ + SEPC C G G V
Sbjct: 746 TSLGLVQMTRKRMGTGLVEAFSEPCPHCGGRGIV 779
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 87 MQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+ ++A+LED LVE + ++ SV+LG V ++P+M AFV+IG R +++
Sbjct: 378 LAQVALLEDGILVEHFVSQTGADSLIGSVFLGKVQNVLPSMEAAFVDIGRGRNAVI 433
>gi|167619212|ref|ZP_02387843.1| ribonuclease E [Burkholderia thailandensis Bt4]
Length = 588
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 199/337 (59%), Gaps = 12/337 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 90 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 150 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGHPGQ 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 202 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVGKVKRYHDDVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 262 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 320 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GLME++R+R+RP+++ C C GTG + E+S
Sbjct: 380 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESS 416
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|395789861|ref|ZP_10469369.1| rne/Rng family ribonuclease [Bartonella taylorii 8TBB]
gi|395428083|gb|EJF94165.1| rne/Rng family ribonuclease [Bartonella taylorii 8TBB]
Length = 870
Score = 233 bits (595), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 170/551 (30%), Positives = 270/551 (49%), Gaps = 44/551 (7%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ EL E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEELDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVA 193
G +R + + P R A EE A +N S E
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL--------ALLEEEEKAAVGENYVDSFTEETNK 112
Query: 194 EADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDGE 253
+ EH++ D ++ SE + +DD E E F H D E
Sbjct: 113 NKKRSRKTKKDEHSNVMAADIENDMTSEAI------TVDDVE-----ETFDANISHDDIE 161
Query: 254 SNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313
G + E+P T K K +++ ++VQV+KE G KG L
Sbjct: 162 MVGAEDVREELP----------TYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAAL 211
Query: 314 TAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIRTVAAGH 370
T Y L R+ +L+ + R G +SRKIT V+ R RLK I K L P+G G+ +RT A
Sbjct: 212 TTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLKEIVKELAVPKGMGVILRTAGANR 271
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
+ E+++D E L W + + ++ P L+H ++D +++
Sbjct: 272 TKAEIKRDYEYLTRLWDTVR----------NLTLKSTAPCLVHEESNLIKRSIRDLYDKN 321
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML +V L
Sbjct: 322 INEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLHPQVSLK 381
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD+ G+IV
Sbjct: 382 SGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRDLAGLIV 439
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
+DFIDM ++ N +LV +++K ++ DR+ ++V +S GL+E++R+R+R SV ++PC
Sbjct: 440 IDFIDMLEERNVKLVEKKLKDCLKSDRARIQVGHISHFGLLEMSRQRIRISVLESTTQPC 499
Query: 611 TCCQGTGRVEA 621
C GTG V +
Sbjct: 500 PHCAGTGSVRS 510
>gi|413958516|ref|ZP_11397755.1| ribonuclease E [Burkholderia sp. SJ98]
gi|413941096|gb|EKS73056.1| ribonuclease E [Burkholderia sp. SJ98]
Length = 1096
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 204/341 (59%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ PEG + RT G S EELQ DL L+ W+ I ++S GV G
Sbjct: 153 TMAQLELPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS-------GVAGQ- 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNLSKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|420252526|ref|ZP_14755633.1| ribonuclease, Rne/Rng family [Burkholderia sp. BT03]
gi|398054413|gb|EJL46534.1| ribonuclease, Rne/Rng family [Burkholderia sp. BT03]
Length = 1097
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 205/341 (60%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 93 LKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ PEG + RT G S EELQ DL L+ W+ I ++S G +G
Sbjct: 153 TMSQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS-------GSQGQ- 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD ++V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVNKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|390575904|ref|ZP_10255984.1| ribonuclease E [Burkholderia terrae BS001]
gi|389932045|gb|EIM94093.1| ribonuclease E [Burkholderia terrae BS001]
Length = 1097
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 205/341 (60%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G +R L+
Sbjct: 93 LKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ PEG + RT G S EELQ DL L+ W+ I ++S G +G
Sbjct: 153 TMSQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS-------GSQGQ- 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD ++V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVNKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|126461575|ref|YP_001042689.1| ribonuclease [Rhodobacter sphaeroides ATCC 17029]
gi|126103239|gb|ABN75917.1| RNAse E [Rhodobacter sphaeroides ATCC 17029]
Length = 890
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 170/555 (30%), Positives = 279/555 (50%), Gaps = 42/555 (7%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LI+++ R+ V++ K+ E E V ++YL VT++ P++ AFV+ G +
Sbjct: 5 MLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 64
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAAL--EEHAVTYDNDSTSHNTEDVAEA 195
R + + P R E + + A E+H + + +A
Sbjct: 65 RHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAASGDA 124
Query: 196 DSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGS---IIDDGEPEA---DFEDFLEGDHH 249
D+ + D E G D L +GS D G+PEA D + + DH
Sbjct: 125 VQSGDVAGMDVVDLGEETGAD-----ALYETDGSDAGAADSGQPEAPDADEKPYRAMDHA 179
Query: 250 LDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKV----IVQVVKEG 305
DG+ + +V ++ P+ + ++ ++Q+ KV +VQVVKE
Sbjct: 180 SDGDDEIESVADEDVAEE--IPAPRKPRSRRY--------KIQEVIKVRQIMLVQVVKEE 229
Query: 306 LGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT-GVERTRLKVIAKTLQ-PEGFGLT 362
G KG LT Y L R+ +L+ + R G +SRKIT +R +LK IA L+ PEG GL
Sbjct: 230 RGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLI 289
Query: 363 IRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSI 422
IRT A + +E+++D E LL W+ I D ++ P ++
Sbjct: 290 IRTAGAKRTKQEIRRDYEYLLRLWEQIR----------DLTLKSVAPAPIYEEGDLIKRT 339
Query: 423 VQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNM 482
++D FN ++++++V+ Y +++ I P +V YD+ +PLF ++ +E ++ M
Sbjct: 340 IRDLFNREIEEVLVEGETGYRTAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGM 399
Query: 483 LSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRL 542
+ V L +GG +VI TEALV+IDVN G GS +E A L NL AA+++AR+LRL
Sbjct: 400 FNPVVQLKSGGYIVIGVTEALVAIDVNSGRAT-KEGSIEETA-LKTNLEAAEEVARQLRL 457
Query: 543 RDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSV 602
RD+ G+IV+DFIDM + N V + +K ++ DR+ ++V +S GLME++R+R+RP +
Sbjct: 458 RDLAGLIVIDFIDMEERKNNAAVEKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGM 517
Query: 603 TFMISEPCTCCQGTG 617
++PC C GTG
Sbjct: 518 LESTTQPCAHCHGTG 532
>gi|393758435|ref|ZP_10347256.1| ribonuclease E [Alcaligenes faecalis subsp. faecalis NCIB 8687]
gi|393164854|gb|EJC64906.1| ribonuclease E [Alcaligenes faecalis subsp. faecalis NCIB 8687]
Length = 1113
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 207/364 (56%), Gaps = 18/364 (4%)
Query: 293 KGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIA 351
+G ++I+QV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 95 EGQELIIQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELREAM 154
Query: 352 KTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
L P+G + RT G S+EELQ DL L+ W I A+ + A PI
Sbjct: 155 DQLDIPQGMSIIARTAGIGRSVEELQWDLNYLMQLWTAIDGAAR----------DNAAPI 204
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
L++ + ++DYF+ + ++++D+ + + +++ + PD RV++Y IPLF
Sbjct: 205 LIYLESSLVIRAIRDYFSPDIGEILIDTDEIHEQAAAFMSVVMPDNLHRVKMYRDDIPLF 264
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+F IE +I S+ V LP+GG++VI+ TEALV+IDVN G+ E+ L N
Sbjct: 265 SRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAIDVNSARST--RGADIEETALRTNQ 322
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR GL
Sbjct: 323 EAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHLDRARVQMGKISRFGL 382
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFYFI 650
ME++R+R+RP++ C C GTG + E+S + RLL ++ + T
Sbjct: 383 MELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSA----LHVLRLLQEEAMKEGTAALH 438
Query: 651 RHIP 654
+P
Sbjct: 439 AQVP 442
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FV+ G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVSYGEE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|33151445|ref|NP_872798.1| ribonuclease E [Haemophilus ducreyi 35000HP]
gi|33147665|gb|AAP95187.1| ribonuclease E [Haemophilus ducreyi 35000HP]
Length = 980
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/331 (37%), Positives = 196/331 (59%), Gaps = 14/331 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV KE G KG LT + L + +L+ + R G +SR+I G ER LK
Sbjct: 94 IKEGQEVIVQVNKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERLELKE 153
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L PE GL +RT G S EELQ DL+ LL W I + A+S
Sbjct: 154 ALDCLDVPEDVGLIVRTAGVGKSPEELQWDLKVLLHHWSAIKQSAESRP----------A 203
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+H+ + ++DY + ++++D+ + + + ++++ + PD +R+ LY+ +P
Sbjct: 204 PFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKAKNHIRLVRPDFINRIRLYEGEVP 263
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE +I + + V LP+GGS+VI+ TEAL +ID+N G E+ L+
Sbjct: 264 LFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAIDINSSRST--RGGDIEETALNT 321
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++A +DR+ ++ +SR
Sbjct: 322 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRIREATRQDRARIQFGRISRF 381
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRV 619
GL+E++R+R+ PS++ S C CQGTG++
Sbjct: 382 GLLEMSRQRLSPSLSEASSHVCPRCQGTGKI 412
>gi|33597842|ref|NP_885485.1| ribonuclease E [Bordetella parapertussis 12822]
gi|33574271|emb|CAE38603.1| ribonuclease E [Bordetella parapertussis]
Length = 1041
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 213/366 (58%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G +++ELQ DL LL W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA+++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NLEAAEEVARQLRLRDLGGLIVIDFIDMEDRKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSA----LHVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|325921640|ref|ZP_08183477.1| RNAse E [Xanthomonas gardneri ATCC 19865]
gi|325547874|gb|EGD18891.1| RNAse E [Xanthomonas gardneri ATCC 19865]
Length = 1243
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 153/429 (35%), Positives = 232/429 (54%), Gaps = 39/429 (9%)
Query: 216 DFDVSEVLKNVNGSIIDDG-----EP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ + K S I G EP EA F D+ E +GF P K E+ D
Sbjct: 23 DIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY-------GAERHGFLPLK-EISRDY 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILI- 327
+ G +K T E +++G +++VQV KE G KG LT + L R+ +L+
Sbjct: 75 FQA---GVDHNKSTIREL----LREGQEIVVQVDKEERGNKGAALTTFISLAGRYMVLMP 127
Query: 328 TSCDRIGVSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
S GVSR+I G +R LK L P+ G+ IRT G EELQ DL+ LL TW
Sbjct: 128 NSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEELQWDLDYLLQTW 187
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
K I E A S A L+++ + ++DY + +++VD+P Y +
Sbjct: 188 KAIAEAALSKPAA----------FLIYQESRLIIRALRDYLRADIGEILVDTPELYADAQ 237
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
++Q + P +++ Y IPLF++F IE +I + V LP+GGS+V++QTEAL ++
Sbjct: 238 EFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALTAV 297
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN GS E+ NL AA+++AR+LRLRD+GG++V+DFIDMA ++R V
Sbjct: 298 DVNSSRAT--KGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASTKHQREVE 355
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGR---VEALE 623
+++ A++ DR+ V++ +SR GLME++R+R+RPS+ C C G GR VE+L
Sbjct: 356 NKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLS 415
Query: 624 TSFSKIEQE 632
S ++ +E
Sbjct: 416 LSIIRVAEE 424
Score = 39.7 bits (91), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV+ G
Sbjct: 1 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDYGAE 60
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 61 RHGFLPLK 68
>gi|91784731|ref|YP_559937.1| ribonuclease E [Burkholderia xenovorans LB400]
gi|91688685|gb|ABE31885.1| RNAse E [Burkholderia xenovorans LB400]
Length = 1096
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 224/409 (54%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I AA
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|332557565|ref|ZP_08411887.1| ribonuclease E [Rhodobacter sphaeroides WS8N]
gi|332275277|gb|EGJ20592.1| ribonuclease E [Rhodobacter sphaeroides WS8N]
Length = 892
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 170/555 (30%), Positives = 279/555 (50%), Gaps = 42/555 (7%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LI+++ R+ V++ K+ E E V ++YL VT++ P++ AFV+ G +
Sbjct: 5 MLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 64
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAAL--EEHAVTYDNDSTSHNTEDVAEA 195
R + + P R E + + A E+H + + +A
Sbjct: 65 RHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAASGDA 124
Query: 196 DSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGS---IIDDGEPEA---DFEDFLEGDHH 249
D+ + D E G D L +GS D G+PEA D + + DH
Sbjct: 125 VQSGDVAGMDVVDLGEETGAD-----ALYETDGSDAGAADSGQPEAPDADEKPYRAMDHA 179
Query: 250 LDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKV----IVQVVKEG 305
DG+ + +V ++ P+ + ++ ++Q+ KV +VQVVKE
Sbjct: 180 SDGDDEIESVADEDVAEE--IPAPRKPRSRRY--------KIQEVIKVRQIMLVQVVKEE 229
Query: 306 LGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT-GVERTRLKVIAKTLQ-PEGFGLT 362
G KG LT Y L R+ +L+ + R G +SRKIT +R +LK IA L+ PEG GL
Sbjct: 230 RGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLI 289
Query: 363 IRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSI 422
IRT A + +E+++D E LL W+ I D ++ P ++
Sbjct: 290 IRTAGAKRTKQEIRRDYEYLLRLWEQIR----------DLTLKSVAPAPIYEEGDLIKRT 339
Query: 423 VQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNM 482
++D FN ++++++V+ Y +++ I P +V YD+ +PLF ++ +E ++ M
Sbjct: 340 IRDLFNREIEEVLVEGETGYRTAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGM 399
Query: 483 LSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRL 542
+ V L +GG +VI TEALV+IDVN G GS +E A L NL AA+++AR+LRL
Sbjct: 400 FNPVVQLKSGGYIVIGVTEALVAIDVNSGRAT-KEGSIEETA-LKTNLEAAEEVARQLRL 457
Query: 543 RDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSV 602
RD+ G+IV+DFIDM + N V + +K ++ DR+ ++V +S GLME++R+R+RP +
Sbjct: 458 RDLAGLIVIDFIDMEERKNNAAVEKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGM 517
Query: 603 TFMISEPCTCCQGTG 617
++PC C GTG
Sbjct: 518 LESTTQPCAHCHGTG 532
>gi|89094315|ref|ZP_01167256.1| ribonuclease E [Neptuniibacter caesariensis]
gi|89081374|gb|EAR60605.1| ribonuclease E [Oceanospirillum sp. MED92]
Length = 947
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/390 (35%), Positives = 219/390 (56%), Gaps = 28/390 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F D+ E +GF P K E+ + T P T+ S+ P K L+ +GT+
Sbjct: 54 EAAFVDY-------GAERHGFLPLK-EISREYFTQPP--TRGSR--PNIKEVLK--EGTE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK-VIAKTL 354
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R +LK ++
Sbjct: 100 VIVQVDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEDRAQLKEALSGVN 159
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
P+ G+ +RT G S EELQ D E L + W I + ++ E P L+++
Sbjct: 160 IPKQMGIIVRTAGVGRSSEELQWDFEYLQTLWTAIKQASE----------EKPAPFLIYQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ V+DY + ++++D P+ + + ++++ + P +++ Y ++ PLF++F
Sbjct: 210 ESNVVIRAVRDYLRSDIGEVLIDDPQVFEDAKNFVKQVMPTYESKIKHYSEQTPLFNRFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA
Sbjct: 270 IETQIETAFQREVTLPSGGSIVIDPTEALVSIDINSARAT--RGGDIEETALHTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N+R V ++ A++ DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDIGGLVVIDFIDMTPIKNQREVENRLRDALKLDRARVQMGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALET 624
R+R+RPS+ C C G G + E+
Sbjct: 388 RQRLRPSLAETRGVVCPRCNGQGTIRDTES 417
Score = 45.4 bits (106), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQPEELRVALVDGQRLYDLDIESGSREQKKANIYKGKITRIEPSLEAAFVDYGAE 63
Query: 138 RPSLMDIKHY-REPFIFPPFR 157
R + +K RE F PP R
Sbjct: 64 RHGFLPLKEISREYFTQPPTR 84
>gi|344340219|ref|ZP_08771145.1| ribonuclease, Rne/Rng family [Thiocapsa marina 5811]
gi|343799877|gb|EGV17825.1| ribonuclease, Rne/Rng family [Thiocapsa marina 5811]
Length = 1152
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 131/395 (33%), Positives = 225/395 (56%), Gaps = 30/395 (7%)
Query: 283 PGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKI 339
PG + ++ V++G +V+VQ+ KE G KG LT + L R+ +L+ + R G VSR+I
Sbjct: 125 PGSRVSIKESVREGREVVVQIDKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRI 184
Query: 340 TGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAAL 398
G +R+ L+ L+ PE GL +RT G ++EELQ DL+ LL WK I A+
Sbjct: 185 EGQDRSELRDAMSQLEIPEDMGLIVRTAGVGKNVEELQWDLDYLLQLWKAIETSAQ---- 240
Query: 399 AADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCD 458
+ P L+++ + ++DY + ++++D+ + S+++ + P
Sbjct: 241 ------DRKAPFLIYQESDVIIRSIRDYLRVDIGEILIDNKAVFERAESFIRQVMPSNLK 294
Query: 459 RVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHG 518
+++LY +PLF ++ IE +I + + V LP+GGS+VI+ TEAL S+D+N G
Sbjct: 295 KLKLYQDEVPLFTRYQIESQIESAFQREVRLPSGGSIVIDHTEALTSVDINSARAT--KG 352
Query: 519 SSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRS 578
+ E+ L+ NL AA +IAR+LRLRD+GG+ V+DFIDM N+R V ++ A++ DR+
Sbjct: 353 ADIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMTPPKNQREVENRLRDALKHDRA 412
Query: 579 MVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLV 638
V+V+ +SR GL+E++R+R+RPS+ + C C+G G + +E+ + I R++
Sbjct: 413 RVQVARISRFGLLEMSRQRLRPSLGESSQQVCPRCKGQGTIRGVES----LALSILRIVE 468
Query: 639 SKSYNQSTFYFIRHIP----------KRRKHLKLE 663
++ ++T + +P KRR L++E
Sbjct: 469 EEAMKENTHRIVAQLPVSVATFLLNEKRRGILEIE 503
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 47/93 (50%)
Query: 62 PEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
P++ + +N +LIN++ R+A ++ ++L L +E + ++Y G++T
Sbjct: 28 PKRETRRGAENNPMKRMLINATQPEELRVATVDGQQLYNLDIESPGREQKKANIYKGIIT 87
Query: 122 KLVPNMGGAFVNIGNSRPSLMDIKHYREPFIFP 154
++ P++ AFV+ G R + +K + P
Sbjct: 88 RVEPSLEAAFVDYGADRHGFLPLKEIARAYFEP 120
>gi|407714323|ref|YP_006834888.1| ribonuclease E [Burkholderia phenoliruptrix BR3459a]
gi|407236507|gb|AFT86706.1| ribonuclease E [Burkholderia phenoliruptrix BR3459a]
Length = 1084
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 224/409 (54%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I AA
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGSAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVGKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|409405710|ref|ZP_11254172.1| ribonuclease E protein [Herbaspirillum sp. GW103]
gi|386434259|gb|EIJ47084.1| ribonuclease E protein [Herbaspirillum sp. GW103]
Length = 1072
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 201/341 (58%), Gaps = 14/341 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT++ L R+ +L+ + R G VSR++ G +R L+
Sbjct: 90 LREGQEIIVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRE 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G + RT G +++ELQ DL L+ W+ I ++A+ A
Sbjct: 150 TMDKLDLPNGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGQTASGA--------- 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ + + ++ + PD+ RV+ Y +P
Sbjct: 201 -FLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQQFMAHVMPDMVHRVKRYRDDVP 259
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALVS+DVN GS E +
Sbjct: 260 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARAT--RGSDIETTAFNT 317
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM + N+R V +K A+ DR+ V++ ++SR
Sbjct: 318 NLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGRLKDALHHDRARVQMGKISRF 377
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RPS++ C C GTG + E+S ++
Sbjct: 378 GLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQV 418
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEE 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|307730550|ref|YP_003907774.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003]
gi|307585085|gb|ADN58483.1| ribonuclease, Rne/Rng family [Burkholderia sp. CCGE1003]
Length = 1097
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 144/409 (35%), Positives = 226/409 (55%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALKEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I ++S
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS----- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G G P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 200 --GTAGQ-PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|187924898|ref|YP_001896540.1| Rne/Rng family ribonuclease [Burkholderia phytofirmans PsJN]
gi|187716092|gb|ACD17316.1| ribonuclease, Rne/Rng family [Burkholderia phytofirmans PsJN]
Length = 1097
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 224/409 (54%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I AA
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|421482797|ref|ZP_15930377.1| ribonuclease E [Achromobacter piechaudii HLE]
gi|400199108|gb|EJO32064.1| ribonuclease E [Achromobacter piechaudii HLE]
Length = 1034
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 212/366 (57%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P+G + RT G ++EELQ DL LL W I A+ + +
Sbjct: 153 TMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQLWTAIDGAAR----------DNSA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALVS+DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVSVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSAL----HVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 43.5 bits (101), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFI 152
R + K F
Sbjct: 64 RHGFLPFKEVARSFF 78
>gi|359797503|ref|ZP_09300087.1| ribonuclease E [Achromobacter arsenitoxydans SY8]
gi|359364614|gb|EHK66327.1| ribonuclease E [Achromobacter arsenitoxydans SY8]
Length = 1017
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 212/366 (57%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P+G + RT G ++EELQ DL LL W I A+ + +
Sbjct: 153 TMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQLWTAIDGAAR----------DNSA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALVS+DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSAL----HVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 43.9 bits (102), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFI 152
R + K F
Sbjct: 64 RHGFLPFKEVARSFF 78
>gi|285018395|ref|YP_003376106.1| ribonuclease E [Xanthomonas albilineans GPE PC73]
gi|283473613|emb|CBA16116.1| probable ribonuclease e protein [Xanthomonas albilineans GPE PC73]
Length = 1112
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/386 (37%), Positives = 219/386 (56%), Gaps = 25/386 (6%)
Query: 252 GESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
GE +GF P K E+ D + G +K T E +++G +V+VQV KE G KG
Sbjct: 62 GERHGFLPLK-EISRDYFQA---GVDHNKATIREL----LREGQEVVVQVDKEERGNKGA 113
Query: 312 TLTAYPKLRSRFWILI-TSCDRIGVSRKITGVERTRLK-VIAKTLQPEGFGLTIRTVAAG 369
LT + L R+ +L+ S GVSR+I G +R LK + K P+ G+ IRT G
Sbjct: 114 ALTTFISLAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLTIPDDMGVIIRTAGVG 173
Query: 370 HSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNE 429
EELQ DLE LL WK+I E AALA P L+++ + ++DY
Sbjct: 174 RDAEELQWDLEYLLQVWKSIAE----AALAK------PAPFLIYQESRLIIRALRDYLRA 223
Query: 430 KVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPL 489
+ +++VD+ Y + ++Q + P +++ Y IPLF++F IE +I + V L
Sbjct: 224 DIGEILVDTVEMYGDAKEFMQQVMPQSLRKLKHYTDDIPLFNRFQIESQIEAAYERSVRL 283
Query: 490 PNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGII 549
P+GGS+V++QTEAL ++DVN GS E NL AA+++AR+LRLRD+GG++
Sbjct: 284 PSGGSIVVDQTEALTAVDVNSSRAT--KGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLV 341
Query: 550 VVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEP 609
V+DFIDMA + ++R V ++ A++ DR+ V++ +SR GL+E++R+R+RPS+
Sbjct: 342 VIDFIDMASNKHQREVENRLQNALKYDRARVQIGRISRFGLLEMSRQRLRPSLGESSQIV 401
Query: 610 CTCCQGTGR---VEALETSFSKIEQE 632
C C G GR VE+L S ++ +E
Sbjct: 402 CPRCDGHGRMRSVESLSLSIIRVAEE 427
Score = 39.3 bits (90), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ + L ++ +E + ++Y G +T+L P++ AFV G
Sbjct: 4 MLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVEYGGE 63
Query: 138 RPSLMDIK 145
R + +K
Sbjct: 64 RHGFLPLK 71
>gi|415909581|ref|ZP_11553157.1| Ribonuclease E, partial [Herbaspirillum frisingense GSF30]
gi|407762557|gb|EKF71383.1| Ribonuclease E, partial [Herbaspirillum frisingense GSF30]
Length = 528
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 124/337 (36%), Positives = 199/337 (59%), Gaps = 14/337 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT++ L R+ +L+ + R G VSR++ G +R L+
Sbjct: 90 LREGQEIIVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRE 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G + RT G +++ELQ DL L+ W+ I +SA+ A
Sbjct: 150 TMDKLDLPNGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGQSASGA--------- 200
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ + + ++ + PD+ RV+ Y +P
Sbjct: 201 -FLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQQFMAHVMPDMVHRVKRYRDDVP 259
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALVS+DVN GS E +
Sbjct: 260 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARAT--RGSDIETTAFNT 317
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM + N+R V +K A+ DR+ V++ ++SR
Sbjct: 318 NLEAADEVARQLRLRDLGGLIVIDFIDMENSKNQREVEGRLKDALHHDRARVQMGKISRF 377
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GLME++R+R+RPS++ C C GTG + E+S
Sbjct: 378 GLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESS 414
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEE 60
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEE 175
R + K + R N S AL E
Sbjct: 61 RHGFLPFKEVARSYFKEGIDVR------NASIKEALRE 92
>gi|301062335|ref|ZP_07202998.1| S1 RNA binding domain protein [delta proteobacterium NaphS2]
gi|300443539|gb|EFK07641.1| S1 RNA binding domain protein [delta proteobacterium NaphS2]
Length = 500
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 141/406 (34%), Positives = 235/406 (57%), Gaps = 30/406 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +++ EP +A F +F + NGF S +++ + + S K+
Sbjct: 41 NIYKGVVERIEPSLQACFVNF-------GSDKNGFL-SVTDIHPEYYASDQDKKKEGAPP 92
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV 342
EK ++KG +++VQV +E G KG LT Y L SR+ +L+ + G+S+KI
Sbjct: 93 RIEKI---LKKGQELLVQVTREMQGHKGAQLTTYLSLASRYLVLMPGS-KGGISKKIDDE 148
Query: 343 E-RTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
E R RLK I + PEG G +RT A S ++ +DL LL WKNI ++ + A+
Sbjct: 149 EERQRLKSIMTQFKLPEGVGYIVRTAAFKQSKRDISRDLNRLLRMWKNIKKNVREAS--- 205
Query: 401 DEGVEGAVPI-LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
P+ L+H+ L ++DYF ++ +++VD T ++V Y++ I+P R
Sbjct: 206 --------PLTLVHKEQDVCLRTLRDYFTSEIAEVLVDDKETLNKVRDYMKVISPRHQGR 257
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
V+L+ ++ P+F ++ IE++I + RVPL +GGS+VI+ TEALV+IDVN G G+
Sbjct: 258 VKLFKEKRPIFAQYEIEKQIETIYRNRVPLKSGGSIVIDPTEALVAIDVNSGR--MRTGA 315
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E N+ AA++IAR+LRLRD+GG++V+DFIDM + + R V + ++ + DR+
Sbjct: 316 DVENTAFKTNIEAAEEIARQLRLRDMGGLVVIDFIDMREKKHIREVEKVLRDKAKEDRAK 375
Query: 580 VKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
+ +S +S+ GL+E++R+R+RPS+ + + C CQG G V ++ET+
Sbjct: 376 ISLSNISKFGLLELSRQRLRPSIEAVSYQTCAYCQGRGLVPSIETA 421
Score = 40.4 bits (93), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN+ RIAV++D +L +E + + ++Y GVV ++ P++ FVN G+
Sbjct: 5 MLINAVEAEEFRIAVIKDGRLDGFYIETTATEQKTGNIYKGVVERIEPSLQACFVNFGSD 64
Query: 138 RPSLMDI 144
+ + +
Sbjct: 65 KNGFLSV 71
>gi|325105837|ref|YP_004275491.1| ribonuclease, Rne/Rng family [Pedobacter saltans DSM 12145]
gi|324974685|gb|ADY53669.1| ribonuclease, Rne/Rng family [Pedobacter saltans DSM 12145]
Length = 516
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 201/340 (59%), Gaps = 12/340 (3%)
Query: 299 VQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPE 357
VQ+ KE + TKGP L++ + RF +L+ D I +S+KI + ERTRL+ I + ++P+
Sbjct: 124 VQIAKEPISTKGPRLSSDLSIAGRFVVLVPFSDVISISKKIKSNTERTRLRKIVEGIKPK 183
Query: 358 GFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMG 417
GFG+ IRTV+ + E+QKD+ L+S W+ +M+ A + MG
Sbjct: 184 GFGIIIRTVSEKKGVAEIQKDILDLVSKWETLMKKIPKTGPAKR----------ILGEMG 233
Query: 418 QTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEE 477
+T +I++D N + VD P + EV SY+ +I+P++ V+LY + P+F+ F +E+
Sbjct: 234 RTSTILRDILNADFTHVYVDDPALFEEVKSYVHEISPEMESIVKLYKGKEPIFEHFGLEK 293
Query: 478 EINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIA 537
+I K V L G LVIE TEAL IDVN G+ + +E A L VN AAK+IA
Sbjct: 294 QIKASFGKTVNLAGGAYLVIEHTEALHVIDVNSGNRTANPENQEENA-LQVNKEAAKEIA 352
Query: 538 RELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKR 597
R+LRLRD+GGI+V+DFIDM N++ +++ +K + DR+ + S+ GL++ITR+R
Sbjct: 353 RQLRLRDMGGIVVIDFIDMHKAPNRKELFDFLKTEMSHDRAKHTILPPSKFGLVQITRQR 412
Query: 598 VRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLL 637
VRP + + SE C C GTG ++A IE ++ +L
Sbjct: 413 VRPEMNIVTSEKCPTCGGTGEIKASIVLIDDIENNLNYIL 452
Score = 45.8 bits (107), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
++INS+ + IA+++D++LVEL E + +N +YLG + K++P + AFV++G
Sbjct: 5 LIINSAPGGVT-IALVQDKQLVELNKEQINNNYAVGDIYLGRIKKIMPGLNAAFVDVGYE 63
Query: 138 RPSLMDIKHY 147
+ + + HY
Sbjct: 64 KDAFL---HY 70
>gi|77462682|ref|YP_352186.1| RNAse E [Rhodobacter sphaeroides 2.4.1]
gi|77387100|gb|ABA78285.1| RNAse E [Rhodobacter sphaeroides 2.4.1]
Length = 936
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 170/555 (30%), Positives = 279/555 (50%), Gaps = 42/555 (7%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LI+++ R+ V++ K+ E E V ++YL VT++ P++ AFV+ G +
Sbjct: 5 MLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 64
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAAL--EEHAVTYDNDSTSHNTEDVAEA 195
R + + P R E + + A E+H + + +A
Sbjct: 65 RHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAASGDA 124
Query: 196 DSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGS---IIDDGEPEA---DFEDFLEGDHH 249
D+ + D E G D L +GS D G+PEA D + + DH
Sbjct: 125 VQSGDVAGMDVVDLGEETGAD-----ALYETDGSDAGAADSGQPEAPDADEKPYRAMDHA 179
Query: 250 LDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKV----IVQVVKEG 305
DG+ + +V ++ P+ + ++ ++Q+ KV +VQVVKE
Sbjct: 180 SDGDDEIESVADEDVAEE--IPAPRKPRSRRY--------KIQEVIKVRQIMLVQVVKEE 229
Query: 306 LGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT-GVERTRLKVIAKTLQ-PEGFGLT 362
G KG LT Y L R+ +L+ + R G +SRKIT +R +LK IA L+ PEG GL
Sbjct: 230 RGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLI 289
Query: 363 IRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSI 422
IRT A + +E+++D E LL W+ I D ++ P ++
Sbjct: 290 IRTAGAKRTKQEIRRDYEYLLRLWEQIR----------DLTLKSVAPAPIYEEGDLIKRT 339
Query: 423 VQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNM 482
++D FN ++++++V+ Y +++ I P +V YD+ +PLF ++ +E ++ M
Sbjct: 340 IRDLFNREIEEVLVEGETGYRTAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGM 399
Query: 483 LSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRL 542
+ V L +GG +VI TEALV+IDVN G GS +E A L NL AA+++AR+LRL
Sbjct: 400 FNPVVQLKSGGYIVIGVTEALVAIDVNSGRAT-KEGSIEETA-LKTNLEAAEEVARQLRL 457
Query: 543 RDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSV 602
RD+ G+IV+DFIDM + N V + +K ++ DR+ ++V +S GLME++R+R+RP +
Sbjct: 458 RDLAGLIVIDFIDMEERKNNAAVEKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGM 517
Query: 603 TFMISEPCTCCQGTG 617
++PC C GTG
Sbjct: 518 LESTTQPCAHCHGTG 532
>gi|423341495|ref|ZP_17319210.1| rne/Rng family ribonuclease [Parabacteroides johnsonii CL02T12C29]
gi|409220383|gb|EKN13338.1| rne/Rng family ribonuclease [Parabacteroides johnsonii CL02T12C29]
Length = 526
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 200/329 (60%), Gaps = 14/329 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+ KE + TKGP LT+ R+ +LI D++ VS KI + ER RL+ + +
Sbjct: 122 GQEVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERARLRQLIQ 181
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK-NIMEHAKSAALAADEGVEGAVPIL 411
+++P+ F + +RT + G + EL +L+ LL W+ NI + K A P L
Sbjct: 182 SIKPKNFSVIVRTSSEGKRVAELDHELKTLLKRWEENIPKITKVKA-----------PAL 230
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
++ + +++++D FN + + V+ YH + Y+ IAP + V+ Y +P+FD
Sbjct: 231 IYEETARAVALLRDIFNPSFQNIYVNDADIYHNIRDYVSLIAPGREEIVQRYTGELPIFD 290
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F I ++I ++ + V +G L+IE TEA+ IDVN G+ G ++EK +DVN A
Sbjct: 291 NFAITKQIKSLFGRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKG-SDAQEKTAIDVNTA 349
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GGIIVVDFIDM++ +N++ +YE + KA+ DR+ + LS+ GLM
Sbjct: 350 AADEIARQLRLRDMGGIIVVDFIDMSEAANRQKLYEHMLKAMSGDRAKHNILPLSKFGLM 409
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVE 620
+ITR+RVRP++ SE C C GTG ++
Sbjct: 410 QITRQRVRPAMDVDTSEACPTCFGTGIIK 438
Score = 45.8 bits (107), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IAVLED+ LVEL E + +YLG V KL+P + AF+++G + + + HY +
Sbjct: 16 IAVLEDKNLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDVGYKKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK 161
+ P F + K
Sbjct: 73 --LGPNFNTQQK 82
>gi|78185904|ref|YP_373947.1| ribonuclease E and G [Chlorobium luteolum DSM 273]
gi|78165806|gb|ABB22904.1| Ribonuclease E and G [Chlorobium luteolum DSM 273]
Length = 570
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 205/341 (60%), Gaps = 14/341 (4%)
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT-SCDRIGVSRKITG-VERTRLKVIAKTL 354
++VQV+KE + TKG LT+ + RF +L+ ++ VSR++ ER RLK + +++
Sbjct: 168 ILVQVIKEPISTKGSRLTSDITIAGRFMVLLPFGGGQVAVSRRVVSRKERARLKKLVRSM 227
Query: 355 QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PEGFG IRTVA L++DLE LL+ W I E K AA P L+ +
Sbjct: 228 LPEGFGAIIRTVAEMQEETLLKQDLEKLLAKWTQIEEKLKDAA----------PPQLIFK 277
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
S+++D V ++V +SP + E +Y++ AP++ V LY ++PLF+ +
Sbjct: 278 EDTIISSVLRDSLTSDVTEIVANSPSIHKETLNYIEWAAPEMVKNVSLYQGKLPLFEGYG 337
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
I +++ ++ S++V L +GG ++IE TEA+V +DVN G + +E+ L N+ AA+
Sbjct: 338 IAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGR--YAAKREQEENSLRTNMEAAR 395
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
++ R+LRLRDIGGIIVVDFIDM D N + VY+ +K + DR+ + +S G+M+IT
Sbjct: 396 EVVRQLRLRDIGGIIVVDFIDMMDARNSKKVYDSMKGELRNDRAKSNILPMSDFGIMQIT 455
Query: 595 RKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISR 635
R+R+RPS+ + + C C G+G V+A T+ ++IE+ + +
Sbjct: 456 RERIRPSLMQRMGDQCPACGGSGVVQARFTTINQIERWLRK 496
Score = 40.8 bits (94), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
V +L+N + +Q +A++ED +L EL++E +S +YLG V K++ + AFV+
Sbjct: 5 VKKQLLMNKTGDEIQ-VALVEDGRLAELIIERPESRRSIGDIYLGRVHKVIEGLKAAFVD 63
Query: 134 IGN 136
IG
Sbjct: 64 IGQ 66
>gi|152996326|ref|YP_001341161.1| ribonuclease [Marinomonas sp. MWYL1]
gi|150837250|gb|ABR71226.1| ribonuclease, Rne/Rng family [Marinomonas sp. MWYL1]
Length = 1071
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 217/405 (53%), Gaps = 32/405 (7%)
Query: 237 EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTK 296
EA F DF D H GF P K S +K S H + +G +
Sbjct: 54 EAAFVDFG-ADRH------GFLPLK-------EISKTYFSKKSNHEGRINIKDVLSEGQE 99
Query: 297 VIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAKTLQ 355
VIVQV KE G KG LT + L R+ +L+ + R G +SR+I G +R+ LK L
Sbjct: 100 VIVQVDKEERGNKGAALTTFVSLAGRYLVLMPNNPRAGGISRRIDGDDRSHLKEAMSGLN 159
Query: 356 -PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHR 414
PE GL +RT G S EELQ DL+ L + W +I + A E P L+++
Sbjct: 160 TPENGGLIVRTAGVGRSTEELQWDLDYLDTLWSSITKAAS----------EKPAPFLIYQ 209
Query: 415 AMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFN 474
+ ++DY E + ++++D Y + +++ + P R+++Y PLF++F
Sbjct: 210 ESNIVIRAIRDYLREDIGEVLIDEKSAYQDAINFVMQVMPHFKSRIKMYTDSTPLFNRFQ 269
Query: 475 IEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAK 534
IE +I + V LP+GGS+VI+ TEALVSID+N G E+ L NL AA
Sbjct: 270 IETQIETAFQREVRLPSGGSIVIDPTEALVSIDINSARAT--KGGDIEETALQTNLEAAD 327
Query: 535 QIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEIT 594
+IAR+LRLRDIGG++V+DFIDM N++ V +K A+E DR+ V++ +SR GL+E++
Sbjct: 328 EIARQLRLRDIGGLVVIDFIDMTPVRNQKEVETRMKNALEADRARVQLGRISRFGLLEMS 387
Query: 595 RKRVRPSVTFMISEPCTCCQGTG---RVEALETSFSK-IEQEISR 635
R+R+RPS+ C C G G VE+L S + IE+E S+
Sbjct: 388 RQRLRPSLGETSGIVCPRCNGQGFIRDVESLALSVLRLIEEECSK 432
Score = 38.9 bits (89), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 40/69 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+++ ++L +L +E + ++Y G +T++ P++ AFV+ G
Sbjct: 4 MLINATQQEELRVALVDGQRLYDLDIESGSREQKKSNIYKGRITRIEPSLEAAFVDFGAD 63
Query: 138 RPSLMDIKH 146
R + +K
Sbjct: 64 RHGFLPLKE 72
>gi|340783559|ref|YP_004750166.1| cytoplasmic axial filament protein CafA and ribonuclease G
[Acidithiobacillus caldus SM-1]
gi|340557710|gb|AEK59464.1| Cytoplasmic axial filament protein CafA and Ribonuclease G
[Acidithiobacillus caldus SM-1]
Length = 496
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/363 (36%), Positives = 214/363 (58%), Gaps = 17/363 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGV-ERTRLKV 349
+ +G +V+VQV+K+ +G+KG L+ L R+ + + R+GVS +I ER RLK
Sbjct: 102 LHEGQEVVVQVIKDPVGSKGARLSTRITLPGRYLVYMPYVPRLGVSSRIEDPGERERLKG 161
Query: 350 IAKTLQP--EGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGA 407
I K + P E G IRT+A G E+ DL+ L W+++ E SA
Sbjct: 162 ILKAMIPADEDGGYIIRTLAEGTEAEDFASDLDFLGRLWQSVHEQVASAR---------- 211
Query: 408 VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRI 467
P L+H+ + L +++D ++ ++++ +DS T+ + ++ P++ +R+E Y
Sbjct: 212 APQLIHQDLNLALRVMRDVMSDDIQRVRIDSRETFEAARQFCAEVIPEVVERIEHYAGDR 271
Query: 468 PLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILD 527
PLFD +N+E+EI L RV L +G L+I+QTEAL ++DVN G F ++E+ IL
Sbjct: 272 PLFDLYNVEDEIERALQSRVTLKSGAYLIIDQTEALTTVDVNTG--AFVGRRNQEETILK 329
Query: 528 VNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSR 587
NL AA IAR+LRLR+IGG+I++DFIDM D+ +KR V+ ++KA++ D + ++++S
Sbjct: 330 TNLEAAAAIARQLRLRNIGGMIIIDFIDMEDEEHKRRVHRALEKALQSDHTRCSITQISA 389
Query: 588 HGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTF 647
GL+E+TRKR R S+ ++ EPC C G G ++ ET +I +EI R +++Y F
Sbjct: 390 LGLVEMTRKRTRESLRQILCEPCPYCHGRGFMKTAETICYEILREIVR--ETRAYPAERF 447
Query: 648 YFI 650
+
Sbjct: 448 VVL 450
>gi|254252866|ref|ZP_04946184.1| Ribonucleases G and E [Burkholderia dolosa AUO158]
gi|124895475|gb|EAY69355.1| Ribonucleases G and E [Burkholderia dolosa AUO158]
Length = 1022
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/337 (37%), Positives = 199/337 (59%), Gaps = 12/337 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 164 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 223
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 224 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNPGQ 275
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ Y + +++ + PD +V+ Y +P
Sbjct: 276 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQARAFMDIVMPDNVSKVKRYHDDVP 335
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 336 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 393
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 394 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 453
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GLME++R+R+RP+++ C C GTG + E+S
Sbjct: 454 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESS 490
Score = 42.4 bits (98), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 75 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 134
Query: 138 RPSLMDIK 145
R + K
Sbjct: 135 RHGFLPFK 142
>gi|406903293|gb|EKD45420.1| hypothetical protein ACD_69C00301G0002 [uncultured bacterium]
Length = 716
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 204/341 (59%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQ+ KE G KG LT + L + +L+ + R+G VSR++ G ER L+
Sbjct: 96 LREGQEIMVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRVGGVSRRVEGKERDDLRD 155
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L PEG GL +RT G SL+EL+ DL+ L+ W I +A++E
Sbjct: 156 LLHNLNLPEGMGLIVRTAGVGKSLDELKWDLDSLMHRWHAI------ETVASEEN--HPA 207
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P L+++ + ++D + + +++VD+P Y + Y++ + PD D+V+LY ++P
Sbjct: 208 PFLIYQEGDAVMRAIRDCLRQDIIEILVDNPELYEKTKQYIEQVKPDFIDKVKLYQDKVP 267
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF + IE++I + V LP+GGS+ I+ TEAL+SIDVN GS E+ +
Sbjct: 268 LFSFYQIEKQIETAYQRVVRLPSGGSISIDHTEALISIDVNSARST--GGSDIEETAFNT 325
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA++IAR+LRLRDIGG+IV+DFIDM+ ++R V +++++E DR+ V+V ++R
Sbjct: 326 NLEAAEEIARQLRLRDIGGLIVIDFIDMSQVKHQREVSHRLQESLEHDRARVQVGHITRF 385
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GL+E++R+R+R + C C G G + +E+ S I
Sbjct: 386 GLLEMSRQRLRSHLGESAQVSCPRCDGKGTIRGIESLTSSI 426
>gi|221638542|ref|YP_002524804.1| RNAse E [Rhodobacter sphaeroides KD131]
gi|221159323|gb|ACM00303.1| RNAse E [Rhodobacter sphaeroides KD131]
Length = 890
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 170/555 (30%), Positives = 279/555 (50%), Gaps = 42/555 (7%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LI+++ R+ V++ K+ E E V ++YL VT++ P++ AFV+ G +
Sbjct: 1 MLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVDYGGN 60
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAAL--EEHAVTYDNDSTSHNTEDVAEA 195
R + + P R E + + A E+H + + +A
Sbjct: 61 RHGFLAFAEIHPDYYQIPVADRKALLEEERAYARAEDDEDHGRSRRRSRPAPAAAASGDA 120
Query: 196 DSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGS---IIDDGEPEA---DFEDFLEGDHH 249
D+ + D E G D L +GS D G+PEA D + + DH
Sbjct: 121 VQSGDVAGMDVVDLGEETGAD-----ALYETDGSDAGAADSGQPEASDADEKPYRAMDHA 175
Query: 250 LDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKV----IVQVVKEG 305
DG+ + +V ++ P+ + ++ ++Q+ KV +VQVVKE
Sbjct: 176 SDGDDEIESVADEDVAEE--IPAPRKPRSRRY--------KIQEVIKVRQIMLVQVVKEE 225
Query: 306 LGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT-GVERTRLKVIAKTLQ-PEGFGLT 362
G KG LT Y L R+ +L+ + R G +SRKIT +R +LK IA L+ PEG GL
Sbjct: 226 RGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLI 285
Query: 363 IRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSI 422
IRT A + +E+++D E LL W+ I D ++ P ++
Sbjct: 286 IRTAGAKRTKQEIRRDYEYLLRLWEQIR----------DLTLKSVAPAPIYEEGDLIKRT 335
Query: 423 VQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNM 482
++D FN ++++++V+ Y +++ I P +V YD+ +PLF ++ +E ++ M
Sbjct: 336 IRDLFNREIEEVLVEGETGYRTAKDFMRMIMPAHARQVIRYDEPMPLFARYQVESYLSGM 395
Query: 483 LSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRL 542
+ V L +GG +VI TEALV+IDVN G GS +E A L NL AA+++AR+LRL
Sbjct: 396 FNPVVQLKSGGYIVIGVTEALVAIDVNSGRAT-KEGSIEETA-LKTNLEAAEEVARQLRL 453
Query: 543 RDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSV 602
RD+ G+IV+DFIDM + N V + +K ++ DR+ ++V +S GLME++R+R+RP +
Sbjct: 454 RDLAGLIVIDFIDMEERKNNAAVEKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGM 513
Query: 603 TFMISEPCTCCQGTG 617
++PC C GTG
Sbjct: 514 LESTTQPCAHCHGTG 528
>gi|311113740|ref|YP_003984962.1| ribonuclease [Rothia dentocariosa ATCC 17931]
gi|310945234|gb|ADP41528.1| probable ribonuclease [Rothia dentocariosa ATCC 17931]
Length = 1204
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 190/324 (58%), Gaps = 9/324 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I K
Sbjct: 519 GDSVLVQVTKDPIGHKGARLTSQVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKD 578
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+G G+ +RT A G S EEL D+ L + W+ I E A S + A P +L+
Sbjct: 579 KLPDGAGVIVRTAAEGASEEELTHDINRLRAQWEEIQEKANSRKVLA--------PEMLY 630
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + V+D FNE M+V + + +Y+ +APDL R++ ++ LFD +
Sbjct: 631 QEPDLMIKTVRDVFNEDFTSMIVQGQSAWDSIEAYVTYVAPDLLSRLQKWEDEDDLFDHY 690
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 691 RINEQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 749
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 750 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQM 809
Query: 594 TRKRVRPSVTFMISEPCTCCQGTG 617
TRKR+ + + SE C C G G
Sbjct: 810 TRKRLGTGLLEVFSEQCDSCGGRG 833
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED L E + + + +VYLG V ++P+M AFV+IG R +++
Sbjct: 440 QIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVL 493
>gi|331005268|ref|ZP_08328660.1| Ribonuclease E [gamma proteobacterium IMCC1989]
gi|330420945|gb|EGG95219.1| Ribonuclease E [gamma proteobacterium IMCC1989]
Length = 902
Score = 233 bits (594), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 198/336 (58%), Gaps = 14/336 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLK- 348
+++GT+VIVQV KE G KG LT + L R +L+ + R G +SR+I G ER L+
Sbjct: 95 LKEGTEVIVQVDKEERGNKGAALTTFISLAGRCMVLMPNNPRGGGISRRIEGEERNELRQ 154
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+++ P+G + +RT G S EELQ DL LL W +I A ++
Sbjct: 155 TLSQIDVPKGMSVIVRTAGIGRSAEELQWDLNYLLQLWGSIKTEADNSN----------A 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P + + + ++DY + +++VD+ TY+ T+++Q + P+ +V+ Y+ P
Sbjct: 205 PHFIFQESNVIIRAIRDYLRPDIGEVIVDNIETYNLATAFVQQVMPNYKSKVKFYEDETP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF+++ IE +I + V LP+GGS+VI+ TEALV+ID+N G E+ L
Sbjct: 265 LFNRYQIESQIETAYEREVHLPSGGSIVIDVTEALVAIDINSARAT--KGGDIEETALQT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA +IAR+LRLRDIGG+IV+DFIDM N+R V E ++ A+ DR+ V+V +SR
Sbjct: 323 NLEAADEIARQLRLRDIGGLIVIDFIDMHPARNQRAVEERMQNALNMDRARVQVGRISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
GL+E++R+R+RPS+ S+ C C G G + + ++
Sbjct: 383 GLLEMSRQRLRPSLGETTSKVCPRCSGHGSIRSTKS 418
>gi|378824333|ref|ZP_09846844.1| S1 RNA binding domain protein [Sutterella parvirubra YIT 11816]
gi|378596849|gb|EHY30226.1| S1 RNA binding domain protein [Sutterella parvirubra YIT 11816]
Length = 1076
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 209/386 (54%), Gaps = 28/386 (7%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+ +G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 ITEGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRAGGVSRRIEGEERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIM------------EHAKSA 396
L P G RT G + EELQ DL LL W+ I E+ +
Sbjct: 153 AMDRLDVPRGMSTIARTAGIGRTTEELQWDLNYLLKLWEAIADAAEPQYELVKEENGRRK 212
Query: 397 ALAADEGVEGA--------VPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSY 448
A E + P L+ + ++DYF ++ +++VD+ Y + +
Sbjct: 213 VTAVTESIVNGKPLKRINPAPFLIVEESNLVVRAIRDYFQPEIGEILVDTDEIYEQARQF 272
Query: 449 LQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDV 508
+ + PD+ +RV+ Y+ IPLF +F +E++I S+ VPLP+GG++VI+ TEALV+IDV
Sbjct: 273 MAHVMPDMVNRVKRYNDDIPLFTRFQVEQQIETAYSRTVPLPSGGAIVIDHTEALVAIDV 332
Query: 509 NGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEE 568
N G+ E+ N AA ++AR++RLRD+GG+IV+DFIDMAD N+R V +
Sbjct: 333 NSARAT--RGADIEETAFRTNCEAADEVARQMRLRDLGGLIVIDFIDMADPKNQRAVEQR 390
Query: 569 VKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSK 628
+K A+ DR+ V+ +++SR GLME++R+R+RPS++ C C G G + E+
Sbjct: 391 LKDAIRYDRARVQTAKISRFGLMELSRQRLRPSLSEGNHVTCPRCNGVGVIRDTESCAL- 449
Query: 629 IEQEISRLLVSKSYNQSTFYFIRHIP 654
++ R+L ++ + T +P
Sbjct: 450 ---QVLRILQEEAMKEGTGAVHAQVP 472
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+ +++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATHAEETRVGIVDGQKLIDIDIETAGREARKSNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|300741647|ref|ZP_07071668.1| ribonuclease, Rne/Rng family [Rothia dentocariosa M567]
gi|300380832|gb|EFJ77394.1| ribonuclease, Rne/Rng family [Rothia dentocariosa M567]
Length = 1171
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 190/324 (58%), Gaps = 9/324 (2%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKT 353
G V+VQV K+ +G KG LT+ L RF + + G+SRK+ ER RLK I K
Sbjct: 486 GDSVLVQVTKDPIGHKGARLTSQVSLPGRFLVYVPGGSMTGISRKLPDTERARLKKILKD 545
Query: 354 LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLH 413
P+G G+ +RT A G S EEL D+ L + W+ I E A S + A P +L+
Sbjct: 546 KLPDGAGVIVRTAAEGASEEELTHDINRLRTQWEEIQEKANSRKVLA--------PEMLY 597
Query: 414 RAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKF 473
+ + V+D FNE M+V + + +Y+ +APDL R++ ++ LFD +
Sbjct: 598 QEPDLMIKTVRDVFNEDFTSMIVQGQSAWDSIEAYVTYVAPDLLSRLQKWEDEDDLFDHY 657
Query: 474 NIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAA 533
I E++ L ++V LP+GGSLVI++TEA+ +DVN G G G + E+ + NL AA
Sbjct: 658 RINEQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGK-FTGSGGNLEETVTKNNLEAA 716
Query: 534 KQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEI 593
++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL+++
Sbjct: 717 EEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQM 776
Query: 594 TRKRVRPSVTFMISEPCTCCQGTG 617
TRKR+ + + SE C C G G
Sbjct: 777 TRKRLGTGLLEVFSEQCDSCGGRG 800
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLM 142
+I VLED L E + + + +VYLG V ++P+M AFV+IG R +++
Sbjct: 407 QIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDIGRGRNAVL 460
>gi|423016223|ref|ZP_17006944.1| ribonuclease E [Achromobacter xylosoxidans AXX-A]
gi|338780749|gb|EGP45150.1| ribonuclease E [Achromobacter xylosoxidans AXX-A]
Length = 1020
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 212/366 (57%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P+G + RT G ++EELQ DL LL W I A+ + +
Sbjct: 153 TMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQLWTAIDGAAR----------DNSA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALVS+DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVSVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSAL----HVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 44.3 bits (103), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|452127522|ref|ZP_21940103.1| ribonuclease E [Bordetella holmesii H558]
gi|451926802|gb|EMD76932.1| ribonuclease E [Bordetella holmesii H558]
Length = 1043
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 211/366 (57%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGENRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L P+G + RT G S+EELQ DL L+ W I A+ + A
Sbjct: 153 TMEQLDVPQGMSIIARTAGIGRSVEELQWDLAYLMQLWTAIDGAAR----------DNAA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALV++DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NVEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCTGTGVIRDAESSAL----HVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 43.5 bits (101), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFI 152
R + K F
Sbjct: 64 RHGFLPFKEVARSFF 78
>gi|206890648|ref|YP_002248021.1| ribonuclease G [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742586|gb|ACI21643.1| ribonuclease G [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 514
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 149/457 (32%), Positives = 248/457 (54%), Gaps = 42/457 (9%)
Query: 201 LVQF--EHNDDEEHDGDDFD--VSEVLKNVNGSIIDDGEPEADF-------------EDF 243
+V+F E D + G+ + V +VLK + +D G +A F F
Sbjct: 24 VVEFYIERKGDSSYVGNIYKGKVVKVLKGMQACFVDIGLDKAAFLYVDDIKGGIKELYPF 83
Query: 244 LEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTK-DSKHTPGEKTWLQVQKGTKVIVQVV 302
LEGD E P E+ S + P+ K D K E+ VQ+G +++VQV
Sbjct: 84 LEGD-----EETEIIPKFEEL---SKSRKPEEIKLDFKDISIEEL---VQEGQEILVQVA 132
Query: 303 KEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKVIAKTLQPEGFGL 361
K+ +GTKG +T+ L R+ +L+ + IGVSRKI E R LK +A ++P GFGL
Sbjct: 133 KDPMGTKGARVTSRITLPGRYVVLMPGMEHIGVSRKIEDEEKRKELKELAAKIKPPGFGL 192
Query: 362 TIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLS 421
+RTV+ + EE+QKD++ L W NI + P L+H L
Sbjct: 193 IMRTVSEDATEEEIQKDIDFLFLLWDNIQKKKDKTH----------APSLIHSEFDLVLR 242
Query: 422 IVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINN 481
++D+ ++ V +M++DS + + + Q P + D++ELY+ P+FD F IE +++
Sbjct: 243 SLRDFMSQNVDRMIIDSYIEWQRLKEFAQVYFPRIADKIELYEGEEPIFDAFGIEVDLDR 302
Query: 482 MLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELR 541
L ++V L +GG +VI+QTEA+ IDVN G F + E IL NL A K+IA ++R
Sbjct: 303 ALERKVWLKSGGYIVIDQTEAMTVIDVNTGK--FVGKENLEDTILRTNLEAVKEIAYQIR 360
Query: 542 LRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPS 601
LR++GGII++DFIDM + NK+ + + + +++DR+ + ++ G++++TRKR R S
Sbjct: 361 LRNLGGIILIDFIDMEKEENKQKIINAMTEVMKKDRAKTTIYNITELGIVQMTRKRTRES 420
Query: 602 VTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLV 638
+ ++ + C C+G GRV+++ + +I +++ + V
Sbjct: 421 LEHILCDSCPYCEGKGRVKSIRSVAYEILRKLKFMTV 457
>gi|410097884|ref|ZP_11292865.1| rne/Rng family ribonuclease [Parabacteroides goldsteinii
CL02T12C30]
gi|409223974|gb|EKN16909.1| rne/Rng family ribonuclease [Parabacteroides goldsteinii
CL02T12C30]
Length = 524
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 202/329 (61%), Gaps = 14/329 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+ KE + TKGP LT+ R+ +LI D++ VS KI + ER RL+ + +
Sbjct: 119 GQEVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERARLRQLIQ 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWK-NIMEHAKSAALAADEGVEGAVPIL 411
+++P+ F + +RT + G + EL +L+ L+ W+ NI++ K VP +
Sbjct: 179 SIKPKNFSVIVRTSSEGKRVAELDHELKTLVKRWEDNIVKVPKLK-----------VPSI 227
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
++ +T+++++D FN + + V+ YH + Y+ IAP + V+ Y +P+FD
Sbjct: 228 VYEETARTVALLRDIFNPSFQNIYVNDADVYHNIRDYVSLIAPGREEIVQRYTGELPIFD 287
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
F I +++ ++ + V +G L+IE TEA+ IDVN G+ G ++EK +DVN A
Sbjct: 288 NFGITKQVKSLFGRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKG-SDAQEKTAIDVNTA 346
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA +IAR+LRLRD+GGIIVVDFIDMA+ +N++ ++E + KA+ DR+ + LS+ GLM
Sbjct: 347 AADEIARQLRLRDMGGIIVVDFIDMAEAANRQKLFEHMTKAMASDRAKHNILPLSKFGLM 406
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVE 620
+ITR+RVRP++ +E C C GTG ++
Sbjct: 407 QITRQRVRPAMDVDTTESCPTCFGTGTIK 435
Score = 45.8 bits (107), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IAVLED+ LVEL E + +YLG V KL+P + AF+++G + + + HY +
Sbjct: 16 IAVLEDKNLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDVGYKKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK 161
+ P F + K
Sbjct: 73 --LGPNFNTQQK 82
>gi|395787817|ref|ZP_10467409.1| rne/Rng family ribonuclease [Bartonella birtlesii LL-WM9]
gi|395410439|gb|EJF76994.1| rne/Rng family ribonuclease [Bartonella birtlesii LL-WM9]
Length = 874
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 173/557 (31%), Positives = 273/557 (49%), Gaps = 56/557 (10%)
Query: 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVN 133
+S +LI++S R+ V+ K+ E E ++YL +T++ P++ AFV
Sbjct: 1 MSNKMLIDASHPEETRVVVVHGNKIEEFDFESEHKKQLKGNIYLARITRVEPSLQAAFVE 60
Query: 134 IGNSRPSLMDIKHYREPFIFPPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDV- 192
G +R + + P R A LEE + + N DV
Sbjct: 61 YGGNRHGFLTFSEIHPDYYQIPIADRL----------ALLEEE----EKAAIGDNYADVL 106
Query: 193 AEADSQDDLVQFEHNDDEEHDGDDFDVS-----EVLKNVNGSIIDDGEPEADFEDFLEGD 247
AE +++ + DE + D+ E++ IDD E E F
Sbjct: 107 AEETNKNKKRSRKTKKDESKNSIAADIENDATFEII------TIDDAE-----ETFSASV 155
Query: 248 HHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLG 307
H + E G + E+P T K K +++ ++VQV+KE G
Sbjct: 156 SHDEIEMVGAEDVREELP----------TYQQKQGRQYKIQEVIKRRQILLVQVIKEERG 205
Query: 308 TKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVE-RTRLKVIAKTLQ-PEGFGLTIR 364
KG LT Y L R+ +L+ + R G +SRKIT V+ R RLK I K L P+G G+ +R
Sbjct: 206 NKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLKEIVKELAVPKGMGVILR 265
Query: 365 TVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQ 424
T A + E+++D E L W + ++ L + P L+H ++
Sbjct: 266 TAGANRTKAEIKRDYEYLTRLWDTV----RTLTL------KSTAPCLVHEESNLIKRSIR 315
Query: 425 DYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLS 484
D +N+ + +++V + Y E +++ + P V+ Y IP+F + NIE +++ ML
Sbjct: 316 DLYNKNINEILVSGDQGYREAKDFMRMLMPSHAKVVQPYRDPIPIFARNNIEIQLDKMLH 375
Query: 485 KRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRD 544
+V L +GG LVI QTEALV+IDVN G S EK L NL AA++IAR+LRLRD
Sbjct: 376 PQVSLKSGGYLVINQTEALVAIDVNSGRST--KELSVEKTALQTNLEAAEEIARQLRLRD 433
Query: 545 IGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTF 604
+ G+IV+DFIDM ++ N RLV +++K ++ DR+ ++V +S GL+E++R+R+R SV
Sbjct: 434 LAGLIVIDFIDMLEERNVRLVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQRIRISVLE 493
Query: 605 MISEPCTCCQGTGRVEA 621
+ PC C GTG V +
Sbjct: 494 STTHPCPHCAGTGNVRS 510
>gi|359151694|ref|ZP_09184315.1| ribonuclease E, partial [Streptomyces sp. S4]
Length = 587
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 195/327 (59%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 106 LKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKGI 165
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + PE G+ +RT A G S EEL++D+E L W+ I + A ++ ++ P
Sbjct: 166 LKKIVPEDAGVIVRTAAEGASEEELRRDVERLHGQWQEIQKKANASNASS--------PS 217
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL+ T+ +V+D FNE K++V + V Y+ +APDL DR++ + +F
Sbjct: 218 LLYGEPDMTVRVVRDIFNEDFSKVIVSGDEAWKTVHGYVSKVAPDLVDRLQRWTSETDVF 277
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ I+E + L ++V LP+GGSLVI++TEA++ +DVN G G G + E+ + NL
Sbjct: 278 ATYRIDEGLAKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGK-FTGQGGNLEETVTRNNL 336
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRD+GGI+V+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 337 EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL 396
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C G G
Sbjct: 397 VQMTRKRVGQGLLESFSETCVHCNGRG 423
Score = 43.1 bits (100), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 67 LISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPN 126
+++ V V+++ S Q I VLED+ LVE + ++ +VYLG V ++P+
Sbjct: 9 FLARREAVERVMVVRQSGERTQ-IGVLEDDVLVEHYVNKEQATSYVGNVYLGKVQNVLPS 67
Query: 127 MGGAFVNIGNSRPSLM 142
M AF++IG R +++
Sbjct: 68 MEAAFIDIGKGRNAVL 83
>gi|152979950|ref|YP_001353036.1| ribonuclease E (RNAse E) protein [Janthinobacterium sp. Marseille]
gi|151280027|gb|ABR88437.1| ribonuclease E (RNAse E) protein [Janthinobacterium sp. Marseille]
Length = 974
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 199/341 (58%), Gaps = 14/341 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +++VQV KE G KG LT++ L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQEIMVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P+G + RT G +++ELQ DL L+ W+ I +S G
Sbjct: 153 TMDKLDLPQGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGQS----------GGG 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
L+++ + ++DYF + ++++D+ Y + ++ + PD+ RV+ Y +P
Sbjct: 203 AFLIYQESSLVIRAIRDYFQPDIGEILIDTDEIYEQAQQFMSHVMPDMVHRVKRYRDDVP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALVS+DVN GS E
Sbjct: 263 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARAT--RGSDIETTAFHT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA+++AR+LRLRD+GG+IV+DFIDM + N+R V +K A+ DR+ V++ ++SR
Sbjct: 321 NCEAAEEVARQLRLRDLGGLIVIDFIDMENAKNQREVETRLKDALHYDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RPS++ C C GTG + E+S ++
Sbjct: 381 GLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQV 421
Score = 39.3 bits (90), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A++ +KL+++ +E + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQQEELRVAIVNGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVSYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|398837150|ref|ZP_10594461.1| ribonuclease, Rne/Rng family [Herbaspirillum sp. YR522]
gi|398209297|gb|EJM95975.1| ribonuclease, Rne/Rng family [Herbaspirillum sp. YR522]
Length = 1059
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/409 (34%), Positives = 226/409 (55%), Gaps = 31/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ +I EP EA F ++ E E +GF P K EV + T +G T
Sbjct: 40 NIYKGVITRIEPSLEACFVNYGE-------ERHGFLPFK-EV---ARTYFKEGVDVRNAT 88
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
E +++G ++IVQV KE G KG LT++ L R+ +L+ + R G VSR++ G
Sbjct: 89 IKEA----LREGQEIIVQVEKEERGNKGAALTSFISLAGRYLVLMPNNPRGGGVSRRVEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ L P G + RT G +++ELQ DL L+ W+ I K
Sbjct: 145 EDRQELRETMDKLDLPGGMSVIARTAGIGRNVDELQWDLNYLMQLWRAIEGAGKV----- 199
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
G+ L+++ + ++DYF + ++++D+ + + ++ + PD+ RV
Sbjct: 200 -----GSGAFLIYQESSLVIRAIRDYFQPDIGEILIDTDDIHDQAQQFMAHVMPDMVHRV 254
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALVS+DVN GS
Sbjct: 255 KRYRDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVSVDVNSARAT--RGSD 312
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E + NL AA+++AR+LRLRD+GG+IV+DFIDM + N+R V +K A+ DR+ V
Sbjct: 313 IETTAFNTNLEAAEEVARQLRLRDLGGLIVIDFIDMENSKNQREVETRLKDALHHDRARV 372
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RPS++ C C GTG + E+S ++
Sbjct: 373 QMGKISRFGLMELSRQRLRPSLSEGSHVTCPRCNGTGHIRDTESSALQV 421
Score = 42.4 bits (98), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETTGREQRKSNIYKGVITRIEPSLEACFVNYGEE 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|283783663|ref|YP_003374417.1| S1 RNA binding domain-containing protein [Gardnerella vaginalis
409-05]
gi|283441778|gb|ADB14244.1| S1 RNA binding domain protein [Gardnerella vaginalis 409-05]
Length = 1093
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 201/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 606 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 665
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E ++KDL+ L+ W+ I AK +E + G
Sbjct: 666 AIVSKIAPKDMGVIIRTAADGASEESIEKDLDSLVKQWERI--EAKR-----EEYLHGKR 718
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + YL+ +APDL +VE +D
Sbjct: 719 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRIDEYLEMMAPDLRSKVEYWDPAEH 778
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 779 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 837
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 838 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 897
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 898 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 930
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
++LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 503 QNLLMEQDFLARRENVERLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYL 560
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G + ++P+M AFV+IG +R ++
Sbjct: 561 GRIQNVLPSMEAAFVDIGQARNGVL 585
>gi|95931016|ref|ZP_01313744.1| ribonuclease, Rne/Rng family [Desulfuromonas acetoxidans DSM 684]
gi|95132912|gb|EAT14583.1| ribonuclease, Rne/Rng family [Desulfuromonas acetoxidans DSM 684]
Length = 502
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 209/351 (59%), Gaps = 17/351 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVE-RTRLKV 349
+Q+G +++ Q+ KE LGTKG +T++ L R + + + D IG+SR+I E + RL+
Sbjct: 110 LQEGQEILAQIAKEPLGTKGARITSHISLPGRHLVYMPTIDHIGISRRIENEEEKERLRT 169
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
+ ++P G G +RT A G S E+L+ D+ L WK+I K A P
Sbjct: 170 TVEEIRPAGSGYIVRTAAEGKSEEDLRADMLYLSELWKDIDSRQKDAE----------AP 219
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
L+H + T +++D E ++ +VVDS Y ++ +L P +EL+DK PL
Sbjct: 220 CLIHSDLDVTSKVLRDILTEDIRHIVVDSQSEYDKIVQFLGTYMPKQQYTIELHDKNEPL 279
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
FD + +E EI L ++V L +GG ++IEQTEAL ++DVN G F + E IL N
Sbjct: 280 FDTYGLEVEIARALGRKVWLKSGGYIIIEQTEALTAVDVNTGR--FVGKRNLEDTILKTN 337
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L A ++IA +LRLR+IGG+I++DFIDM ++++ V+ +++A++ D+S + ++S G
Sbjct: 338 LEAVREIAYQLRLRNIGGLIIIDFIDMEKEAHREQVHSALEEALKSDKSKTNILKISELG 397
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS----FSKIEQEISRL 636
L+E+TRKRVR S+ + EPC C+GTG +++ T F K+++E++ L
Sbjct: 398 LVEMTRKRVRESIGRTLCEPCPYCEGTGYIKSRTTMVFEIFRKLKREMNDL 448
>gi|421867151|ref|ZP_16298810.1| Ribonuclease E [Burkholderia cenocepacia H111]
gi|358072565|emb|CCE49688.1| Ribonuclease E [Burkholderia cenocepacia H111]
Length = 1064
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNAGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMPDNVAKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.7 bits (99), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|402846208|ref|ZP_10894523.1| ribonuclease E/G family protein [Porphyromonas sp. oral taxon 279
str. F0450]
gi|402268286|gb|EJU17667.1| ribonuclease E/G family protein [Porphyromonas sp. oral taxon 279
str. F0450]
Length = 520
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 146/431 (33%), Positives = 229/431 (53%), Gaps = 32/431 (7%)
Query: 202 VQFEHNDDEEHDGDDF--DVSEVLKNVNGSIIDDGEPEADFEDFLEGDHHLDG------- 252
+Q E D GD + V +V+ +N + +D G + F +L+
Sbjct: 27 LQRERRDLAFAVGDIYLGRVKKVMPGLNAAFVDVGYKKDAFLHYLDLGMIYQAQQRFLEQ 86
Query: 253 -ESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGP 311
E PS S++P + P KD K ++ G V+VQVVKE + TKGP
Sbjct: 87 IEKTKAVPSLSKIP-----TFPDLPKDGKIAD------YLKAGQNVLVQVVKEPISTKGP 135
Query: 312 TLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAKTLQPEGFGLTIRTVAAGH 370
L+A + R +L+ D++ VS KI + ER RLK + +++P+ F + IRT A G
Sbjct: 136 RLSAEISIAGRNLVLVPFSDKVSVSAKIESHEERARLKQLILSMKPKNFSVIIRTSAEGK 195
Query: 371 SLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEK 430
EL ++L LL W+ ++ P +++ + L I++D FN
Sbjct: 196 RASELDQELSRLLRRWEESIQKLPKIT---------KTPKIVYEESSRALGILRDTFNPS 246
Query: 431 VKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLP 490
+ + V+ Y E+ Y++ IAP D V LY +P+FD+ N+ ++I + V
Sbjct: 247 FQSIHVNDKAYYEEIREYVRQIAPGREDIVRLYTGNLPIFDEKNVTKQIKASFGRTVTCK 306
Query: 491 NGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550
+G L+IEQTEA+ +DVN G+ + +E +DVNL AA+++AR+LRLRD+GGIIV
Sbjct: 307 SGAYLIIEQTEAMYVVDVNSGNRS-RKSTEQEGTAIDVNLIAAEELARQLRLRDMGGIIV 365
Query: 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPC 610
VDFIDM D N++L+YE + K +E DR+ + LS+ G+M+ITR+RVRP+ E C
Sbjct: 366 VDFIDMHDQKNRQLLYEHMVKLMESDRTRHNILPLSKFGVMQITRQRVRPATQINTDETC 425
Query: 611 TCCQGTGRVEA 621
C GTG++++
Sbjct: 426 PTCLGTGKMKS 436
Score = 42.4 bits (98), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147
+A+LED++LVEL E +YLG V K++P + AFV++G + + + HY
Sbjct: 16 MALLEDQRLVELQRERRDLAFAVGDIYLGRVKKVMPGLNAAFVDVGYKKDAFL---HY 70
>gi|298252878|ref|ZP_06976672.1| ribonuclease G/E [Gardnerella vaginalis 5-1]
gi|297533242|gb|EFH72126.1| ribonuclease G/E [Gardnerella vaginalis 5-1]
Length = 1077
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 201/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 584 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 643
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E ++KDL+ L+ W+ I AK +E + G
Sbjct: 644 AIVSKIAPKDMGVIIRTAADGASEESIEKDLDSLVKQWERI--EAKR-----EEYLHGKR 696
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + YL+ +APDL +VE +D
Sbjct: 697 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRIDEYLEMMAPDLRSKVEYWDPAEH 756
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 757 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 815
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 816 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 875
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 876 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 908
Score = 43.1 bits (100), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
++LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 481 QNLLMEQDFLARRENVERLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYL 538
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G + ++P+M AFV+IG +R ++
Sbjct: 539 GRIQNVLPSMEAAFVDIGQARNGVL 563
>gi|424662583|ref|ZP_18099620.1| rne/Rng family ribonuclease [Bacteroides fragilis HMW 616]
gi|404576273|gb|EKA81011.1| rne/Rng family ribonuclease [Bacteroides fragilis HMW 616]
Length = 524
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/352 (36%), Positives = 212/352 (60%), Gaps = 15/352 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKI-TGVERTRLKVIAK 352
G +V+VQ+VKE + TKGP LT+ R+ +LI D++ VS+KI + ER RLK +
Sbjct: 119 GQEVVVQIVKEPISTKGPRLTSEISFAGRYLVLIPFNDKVSVSQKIKSSEERARLKQLLM 178
Query: 353 TLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILL 412
+++P+ FG+ +RTVA G + EL +L+ LL W+ + + A P L+
Sbjct: 179 SIKPKNFGVIVRTVAEGKRVAELDGELKVLLKHWEESITKVQKAT---------KFPTLI 229
Query: 413 HRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFDK 472
+ + +++++D FN + + V++ ++E+ Y+ IAP+ V+LY ++P++D
Sbjct: 230 YEETSRAVALLRDLFNPSFENIYVNNEAVFNEIRDYVTLIAPERAGIVKLYKGQLPIYDN 289
Query: 473 FNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAA 532
F I ++I + K V +G L+IE TEAL +DVN G+ + + +E L+VNL A
Sbjct: 290 FGITKQIKSSFGKTVSYKSGAYLIIEHTEALHVVDVNSGNRT-KNANGQEGNALEVNLGA 348
Query: 533 AKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLME 592
A ++AR+LRLRD+GGIIVVDFIDM + N++ +YE + +++DR+ + LS+ GLM+
Sbjct: 349 ADELARQLRLRDMGGIIVVDFIDMNEAENRQKLYERMCANMQKDRARHNILPLSKFGLMQ 408
Query: 593 ITRKRVRPSVTFMISEPCTCCQGTGRVEA----LETSFSKIEQEISRLLVSK 640
ITR+RVRP++ E C C G G +++ +T SKI+ +++L + K
Sbjct: 409 ITRQRVRPAMDVNTMETCPTCFGKGTIKSSILFTDTLESKIDYLVNKLKIKK 460
Score = 42.7 bits (99), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 90 IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYRE 149
IA+LED+ LVEL E + ++YLG V KL+P + FV++G + + + HY +
Sbjct: 16 IALLEDKSLVELQSEGRNISFSVGNMYLGRVKKLMPGLNACFVDVGYEKDAFL---HYLD 72
Query: 150 PFIFPPFRCRTK--------KQEVNGSASAALEEHAVTYDNDSTSHNTEDVAE 194
+ P F K K+++N + A L D D T NT V +
Sbjct: 73 --LGPQFNSLEKYVKQTLSDKKKLNPISKATLLPDL---DKDGTVANTLKVGQ 120
>gi|385208625|ref|ZP_10035493.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1]
gi|385180963|gb|EIF30239.1| ribonuclease, Rne/Rng family [Burkholderia sp. Ch1-1]
Length = 1086
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/409 (34%), Positives = 224/409 (54%), Gaps = 29/409 (7%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
N+ II EP EA F ++ E H GF P K EV Q +D
Sbjct: 40 NIYKGIITRIEPSLEACFVNYGEDRH-------GFLPFK-EVAR-------QYFRDGVDM 84
Query: 283 PGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITG 341
+ +++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G
Sbjct: 85 RSARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEG 144
Query: 342 VERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAA 400
+R L+ LQ PEG + RT G S EELQ DL L+ W+ I AA
Sbjct: 145 DDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIE--------AA 196
Query: 401 DEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRV 460
+ P+L++ + ++DYF + ++++D+ + + +++ + PD +V
Sbjct: 197 SQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNVSKV 256
Query: 461 ELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSS 520
+ Y +PLF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+
Sbjct: 257 KRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGAD 314
Query: 521 KEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMV 580
E+ NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V
Sbjct: 315 IEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARV 374
Query: 581 KVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
++ ++SR GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 375 QMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y G++T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|297243303|ref|ZP_06927237.1| ribonuclease G/E [Gardnerella vaginalis AMD]
gi|296888710|gb|EFH27448.1| ribonuclease G/E [Gardnerella vaginalis AMD]
Length = 1079
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/333 (37%), Positives = 201/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RL+
Sbjct: 578 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSDRERSRLR 637
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S E ++KDL+ L+ W+ I AK +E + G
Sbjct: 638 AIVSKIAPKDMGVIIRTAADGASEESIEKDLDSLVKQWERI--EAKR-----EEYLHGKR 690
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ +K++V+ + YL+ +APDL +VE +D
Sbjct: 691 PKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVRQRIDEYLEMMAPDLRSKVEYWDPAEH 750
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK+ I+ ++ + ++V LP GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 751 EGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGR-FIGRGKSLEET 809
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 810 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAE 869
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKRV + SE C C+G G
Sbjct: 870 VTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRG 902
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
++LL E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 475 QNLLMEQDFLARRENVERLMVVRERDRHT--QISVIEDNILVEHYVSDIQEVATVGNIYL 532
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G + ++P+M AFV+IG +R ++
Sbjct: 533 GRIQNVLPSMEAAFVDIGQARNGVL 557
>gi|213693152|ref|YP_002323738.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|384200380|ref|YP_005586123.1| ribonuclease G [Bifidobacterium longum subsp. infantis ATCC 15697 =
JCM 1222]
gi|213524613|gb|ACJ53360.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|320459332|dbj|BAJ69953.1| ribonuclease G [Bifidobacterium longum subsp. infantis ATCC 15697 =
JCM 1222]
Length = 977
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 203/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 585 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 644
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 645 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 697
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 698 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYGRIEEYLDTMAPDLKDKLEKWDPAEH 757
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 758 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 816
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 817 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 876
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 877 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 909
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 482 QSQLMEQDFLARRENVDRLMVVREKEQHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 539
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 540 GRVQNVLPSMEAAFVDIGQARNGVL 564
>gi|329120430|ref|ZP_08249096.1| ribonuclease E, partial [Neisseria bacilliformis ATCC BAA-1200]
gi|327462114|gb|EGF08442.1| ribonuclease E [Neisseria bacilliformis ATCC BAA-1200]
Length = 954
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 130/346 (37%), Positives = 205/346 (59%), Gaps = 16/346 (4%)
Query: 284 GEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT 340
G K +Q +++G +VIVQV K+ G KG LT + L R+ +L+ + R G VSR+I
Sbjct: 121 GGKVRIQDVLKEGMQVIVQVEKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIE 180
Query: 341 GVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALA 399
G ER LK +A+ P G L RT G S+EELQ D + LL W+ I E A A
Sbjct: 181 GEERQELKDAMAELNVPRGMSLIARTAGIGRSVEELQWDFDYLLKLWQAIEE----AGNA 236
Query: 400 ADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
E P LL + ++DYF + +++VD+ Y E++ ++ + P R
Sbjct: 237 HQE------PYLLFMESSLLIRAIRDYFRPDIGEILVDNAEVYEEISEFMSYVMPANTGR 290
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
++LY PLF +F IE +I + S+ V LP+GG++VI+ TEALVSIDVN G+
Sbjct: 291 LKLYQDHTPLFSRFQIEHQIESAFSRSVNLPSGGAIVIDHTEALVSIDVNSARAT--RGA 348
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E+ N+ AA+++AR++RLRD+GG+IV+DFIDM + ++R V ++ A+++DR+
Sbjct: 349 DIEETAFKTNMEAAEEVARQMRLRDLGGLIVIDFIDMENPKHQREVENTLRDALKKDRAR 408
Query: 580 VKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
V+ ++LSR GL+E++R+R++P++ C C GTG + +E++
Sbjct: 409 VQTAKLSRFGLLELSRQRLKPALGESSHTACPRCAGTGVIRGIEST 454
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ + L++L +E + + ++Y GV+T++ P++ FV+ G
Sbjct: 42 MLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYGTD 101
Query: 138 RPSLMDIK 145
R + K
Sbjct: 102 RHGFLPFK 109
>gi|107022187|ref|YP_620514.1| ribonuclease [Burkholderia cenocepacia AU 1054]
gi|116689133|ref|YP_834756.1| ribonuclease [Burkholderia cenocepacia HI2424]
gi|105892376|gb|ABF75541.1| RNAse E [Burkholderia cenocepacia AU 1054]
gi|116647222|gb|ABK07863.1| RNAse E [Burkholderia cenocepacia HI2424]
Length = 1059
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNSGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMPDNVAKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.4 bits (98), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|444372042|ref|ZP_21171542.1| ribonuclease E/G family protein, partial [Burkholderia cenocepacia
K56-2Valvano]
gi|443594273|gb|ELT62940.1| ribonuclease E/G family protein, partial [Burkholderia cenocepacia
K56-2Valvano]
Length = 845
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 90 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 149
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 150 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNAGQ 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD +V+ Y +P
Sbjct: 202 PMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMPDNVAKVKRYHDDVP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 262 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 320 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 380 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 420
Score = 42.7 bits (99), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 1 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 60
Query: 138 RPSLMDIK 145
R + K
Sbjct: 61 RHGFLPFK 68
>gi|170732421|ref|YP_001764368.1| ribonuclease [Burkholderia cenocepacia MC0-3]
gi|169815663|gb|ACA90246.1| ribonuclease, Rne/Rng family [Burkholderia cenocepacia MC0-3]
Length = 1056
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNSGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMPDNVAKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|377821361|ref|YP_004977732.1| ribonuclease E [Burkholderia sp. YI23]
gi|357936196|gb|AET89755.1| ribonuclease E [Burkholderia sp. YI23]
Length = 1114
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/341 (37%), Positives = 204/341 (59%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L+ PEG + RT G S EELQ DL L+ W+ I ++S GV G
Sbjct: 153 TMAQLELPEGMSIIARTAGIGRSAEELQWDLNYLMQLWRAIEAASQS-------GVAGQ- 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQARAFMDIVMPDNLSKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.7 bits (99), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GVVT++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIKH 146
R + K
Sbjct: 64 RHGFLPFKE 72
>gi|23465843|ref|NP_696446.1| ribonuclease G [Bifidobacterium longum NCC2705]
gi|23326541|gb|AAN25082.1| ribonuclease G [Bifidobacterium longum NCC2705]
Length = 1003
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 203/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 611 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 670
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 671 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 723
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 724 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 783
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 784 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 842
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 843 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 902
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 903 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 935
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 508 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 565
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 566 GRVQNVLPSMEAAFVDIGQARNGVL 590
>gi|328953935|ref|YP_004371269.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109]
gi|328454259|gb|AEB10088.1| ribonuclease, Rne/Rng family [Desulfobacca acetoxidans DSM 11109]
Length = 503
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 213/358 (59%), Gaps = 13/358 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITG-VERTRLKV 349
+Q+G +V+VQV K L KG LT++ L R +L+ + + +GVSR+I ER RLK
Sbjct: 112 LQEGQEVLVQVAKPPLCGKGARLTSHITLPGRHLVLMPTVNHVGVSRRIADEAERARLKD 171
Query: 350 IAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVP 409
++P GL RT + G ++L+ ++E LL W NI+ ++A A+
Sbjct: 172 ALLAIKPPDCGLIARTASEGVEGDKLRSEIEFLLQIWNNILRKKETAPTAS--------- 222
Query: 410 ILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPL 469
LLHR + L +V+D F ++V ++VD T+ ++ +++ P + VELY R PL
Sbjct: 223 -LLHRELDIVLRVVRDLFTKEVDCLIVDDFETHAKIIQFVESFQPLMKFNVELYQSREPL 281
Query: 470 FDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVN 529
F+ ++IE E+ L K+V L +GG ++IE TEALV IDVN G + H + E+ IL N
Sbjct: 282 FEHYDIEIELQRALGKKVWLKSGGYIIIEPTEALVVIDVNTGRYVGKH--NLEETILKTN 339
Query: 530 LAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHG 589
L A K+IA +LRLR+IGG+IV+DFIDM ++N+ VY +K+A+++DR+ V ++S G
Sbjct: 340 LEAVKEIAYQLRLRNIGGLIVIDFIDMEKEANREKVYNVLKEALKKDRAKTSVLKMSELG 399
Query: 590 LMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTF 647
L+E+TR+R R S+ M++EPC C G + + T + +E++ ++ S Q T
Sbjct: 400 LVEMTRQRSRQSLHHMLTEPCPYCDQKGFIRSRLTVAFDMLRELTTMIGSLDSQQVTL 457
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 89 RIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDI 144
R+A++E+ +VEL +E ++ ++Y G V K++P MG AFV+IG R + + +
Sbjct: 15 RVALIENGNVVELYIERDSASSLIGNIYKGRVIKVLPGMGAAFVDIGLERSAFLYV 70
>gi|333374661|ref|ZP_08466500.1| ribonuclease E [Kingella kingae ATCC 23330]
gi|332975051|gb|EGK11957.1| ribonuclease E [Kingella kingae ATCC 23330]
Length = 930
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/346 (36%), Positives = 207/346 (59%), Gaps = 16/346 (4%)
Query: 284 GEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKIT 340
G K +Q +++GT++IVQV K+ G KG LT Y L R+ +L+ + R G VSR+I
Sbjct: 83 GGKARIQDVLKEGTQLIVQVEKDERGNKGAALTTYISLAGRYLVLMPNNPRGGGVSRRIE 142
Query: 341 GVERTRLK-VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALA 399
G +R LK +A+ P G + RT G S EEL D LL W+ I + AA A
Sbjct: 143 GEDRAELKEAMAQLDVPNGMSIIARTAGIGRSAEELNWDFNYLLQLWRAI----EDAAAA 198
Query: 400 ADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDR 459
+ P LL + ++DY+ + +++VD+P Y +V+ ++ + P+ R
Sbjct: 199 HKQ------PYLLFMESSLVIRAIRDYYRPDISEILVDNPEVYEQVSEFMSYVMPNNLSR 252
Query: 460 VELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGS 519
++LY+ PLF + IE++I ++ V LP+GG++VI+ TEALVSIDVN GS
Sbjct: 253 LKLYEDHTPLFSRLQIEQQIETAFARSVNLPSGGAIVIDHTEALVSIDVNSARST--RGS 310
Query: 520 SKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSM 579
E+ N+ AA+++AR++RLRD+GG++V+DFIDM D ++R V ++ A+++DR+
Sbjct: 311 DIEETAFRTNMEAAEEVARQMRLRDLGGLVVIDFIDMEDAKHQRDVETTLRDALKKDRAR 370
Query: 580 VKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
V++ +LSR GL+E++R+R++P++ C C GTG + ++E++
Sbjct: 371 VQMGKLSRFGLLELSRQRLQPALAESSHIACPRCAGTGVIRSIEST 416
Score = 40.0 bits (92), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ + L++L +E + + ++Y GVVT++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYTGVVTRIEPSLEACFVDYGTD 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|206559375|ref|YP_002230136.1| putative ribonuclease E [Burkholderia cenocepacia J2315]
gi|206561223|ref|YP_002231988.1| ribonuclease E 1 [Burkholderia cenocepacia J2315]
gi|444363009|ref|ZP_21163490.1| ribonuclease E/G family protein [Burkholderia cenocepacia BC7]
gi|198035413|emb|CAR51289.1| putative ribonuclease E [Burkholderia cenocepacia J2315]
gi|198037265|emb|CAR53187.1| ribonuclease E 1 [Burkholderia cenocepacia J2315]
gi|443595780|gb|ELT64335.1| ribonuclease E/G family protein [Burkholderia cenocepacia BC7]
Length = 1054
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/341 (36%), Positives = 201/341 (58%), Gaps = 12/341 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR+I G ER L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGDERQELRE 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
LQ P+G + RT G S EELQ DL LL W+ I AA +
Sbjct: 153 TMAQLQIPDGMSMIARTAGIGRSAEELQWDLNYLLQLWRAIE--------AASQSGNAGQ 204
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P+L++ + ++DYF + ++++D+ + + +++ + PD +V+ Y +P
Sbjct: 205 PMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQARAFMDIVMPDNVAKVKRYHDDVP 264
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ VPLP+GG++VI+ TEALV+IDVN G+ E+
Sbjct: 265 LFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALVAIDVNSARAT--KGADIEETATRT 322
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
NL AA ++AR+LRLRD+GG+IV+DFIDM ++R V + +K A++ DR+ V++ ++SR
Sbjct: 323 NLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRF 382
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKI 629
GLME++R+R+RP+++ C C GTG + E+S ++
Sbjct: 383 GLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQV 423
Score = 42.4 bits (98), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL+++ +E + ++Y GV+T++ P++ FVN G
Sbjct: 4 MLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNYGED 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|260888407|ref|ZP_05899670.1| cytoplasmic axial filament protein [Selenomonas sputigena ATCC
35185]
gi|330838279|ref|YP_004412859.1| ribonuclease, Rne/Rng family [Selenomonas sputigena ATCC 35185]
gi|260861943|gb|EEX76443.1| cytoplasmic axial filament protein [Selenomonas sputigena ATCC
35185]
gi|329746043|gb|AEB99399.1| ribonuclease, Rne/Rng family [Selenomonas sputigena ATCC 35185]
Length = 479
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 132/359 (36%), Positives = 206/359 (57%), Gaps = 15/359 (4%)
Query: 281 HTPGEKTW--LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRK 338
H +KT ++ G ++ VQ+ K+ +GTKGP T + + R +L+ + IG+SR+
Sbjct: 75 HEGAQKTTPVARIHIGQRLPVQITKDAIGTKGPRATMHLSIPGRNVVLMPTAAYIGISRR 134
Query: 339 ITG-VERTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAA 397
I G ER RL+ IA + P G GL IRT A G + E Q+D++ L+ W+ + K A
Sbjct: 135 IEGEAERARLREIAARICPAGMGLIIRTAAHGQTEESFQEDVDRLVRLWQTLQAKNKMAK 194
Query: 398 LAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLC 457
P LL+R + +V+D F E++ + +D V ++ I+P+L
Sbjct: 195 ----------APALLYRDADLIVRLVRDSFTEEIDALYIDDADACRRVKELVESISPELA 244
Query: 458 DRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGH 517
RV LY++R PLF ++ +E EI + + V LP+GGS+VI++TEAL +IDVN G +
Sbjct: 245 QRVHLYEEREPLFRRYGVEGEIERLGEREVVLPSGGSIVIDKTEALTAIDVNTGR--YVG 302
Query: 518 GSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDR 577
++ + NL AA +I +++RLRDIGGII+VDFIDM D K + ++ V DR
Sbjct: 303 KANLGDTVYRTNLEAAAEILKQIRLRDIGGIILVDFIDMDTDEQKEKLLAFLRDRVRFDR 362
Query: 578 SMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRL 636
+ + +++ GL+EITRK+ R ++ +I PC C G GRVE+ ET +I ++I RL
Sbjct: 363 TKTNIVDITALGLIEITRKKSRQNLESIIYSPCPYCHGRGRVESPETIAIRICRDIRRL 421
>gi|72162582|ref|YP_290239.1| ribonuclease E and G [Thermobifida fusca YX]
gi|71916314|gb|AAZ56216.1| ribonuclease E and G [Thermobifida fusca YX]
Length = 908
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 190/327 (58%), Gaps = 11/327 (3%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ + + G+SRK+ ER RLK I
Sbjct: 455 LKSGQSVLVQVTKDPVGHKGARLTSQISLPGRYLVYVPDGSMTGISRKLPDKERARLKQI 514
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
K + P G G+ +RT A G S EEL++D+ L W++I AKSA P
Sbjct: 515 LKKVMPNGAGVIVRTAAEGASEEELERDIARLSQQWESIKRKAKSAT----------APA 564
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL T+ +V+D FNE +VV + + Y+ +AP L DR+ + + +F
Sbjct: 565 LLSSEPDLTIRVVRDIFNEDFSSLVVSGDDAWETIRDYVNQVAPHLADRLSHWTEDRDIF 624
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
+ + I+E+I L ++V LP+GGSL+I++TEA+ IDVN G G G + E+ + NL
Sbjct: 625 EAYRIDEQIAKALERKVWLPSGGSLIIDRTEAMTVIDVNTGK-FTGQGGNLEETVTKNNL 683
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 684 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRMLECLSRDRTKHQVAEVTSLGL 743
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + S C C G G
Sbjct: 744 VQMTRKRVGQGLLEAFSHTCEHCNGRG 770
Score = 44.7 bits (104), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 79 LINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSR 138
LI I +IAVLED LVE ++ +VYLG V ++P+M AFV+IG R
Sbjct: 369 LIVRRIGERTQIAVLEDNVLVEHYVDRADHKSYVGNVYLGRVQNVLPSMEAAFVDIGKGR 428
Query: 139 PSLM 142
+++
Sbjct: 429 NAVL 432
>gi|317482959|ref|ZP_07941963.1| rne/Rng family ribonuclease [Bifidobacterium sp. 12_1_47BFAA]
gi|316915566|gb|EFV36984.1| rne/Rng family ribonuclease [Bifidobacterium sp. 12_1_47BFAA]
Length = 1003
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 203/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 611 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 670
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 671 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 723
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 724 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 783
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 784 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 842
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 843 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 902
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 903 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 935
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 508 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 565
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 566 GRVQNVLPSMEAAFVDIGQARNGVL 590
>gi|292493394|ref|YP_003528833.1| Rne/Rng family ribonuclease [Nitrosococcus halophilus Nc4]
gi|291581989|gb|ADE16446.1| ribonuclease, Rne/Rng family [Nitrosococcus halophilus Nc4]
Length = 785
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 149/436 (34%), Positives = 231/436 (52%), Gaps = 37/436 (8%)
Query: 225 NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHT 282
NV I EP EA F D+ + GF P K EV H QG
Sbjct: 40 NVYKGKITRIEPSLEAVFVDY-------GADRQGFLPLK-EVARGYFQPH-QGE------ 84
Query: 283 PGEKTWLQ--VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKI 339
PGE+ +Q +++G +++VQV KE G KG L+ + L R+ +L+ + R G VSR+I
Sbjct: 85 PGERLKVQEVLKEGQELLVQVEKEERGNKGAALSTFVSLAGRYLVLMPNNPRAGGVSRRI 144
Query: 340 TGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAAL 398
G ER+ L + L+ PEG GL RT A G S EELQ DL LL W+ I A+
Sbjct: 145 EGEERSALLEAMRALEVPEGMGLIARTAALGKSTEELQWDLNYLLHLWQAIQVAAQ---- 200
Query: 399 AADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCD 458
E P L+++ + ++DY V ++++D+P Y +++ + P
Sbjct: 201 ------ERPAPFLIYQESDVIIRALRDYLRLDVGEILIDTPDVYQRAYDFMRQVMPHELQ 254
Query: 459 RVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHG 518
+++LY ++ LF +F IE +I V LP+GG++VI+ TEAL +ID+N G
Sbjct: 255 KLKLYQDKVSLFTRFQIESQIETAFQHEVALPSGGAIVIDYTEALTTIDINSARA--NKG 312
Query: 519 SSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRS 578
E+ L NL +A++IAR+L+LRD+GG+IV+DFIDMA N+R V +++ + DR+
Sbjct: 313 EDIEETALSTNLESAEEIARQLKLRDLGGLIVIDFIDMAPLRNQRAVENRLRECLREDRA 372
Query: 579 MVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLV 638
V+V +SR GL+E++R+R+RPS+ C C G G V +E+ + + RL+
Sbjct: 373 RVQVGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCSGRGHVRGVES----LGLSVLRLVE 428
Query: 639 SKSYNQSTFYFIRHIP 654
+ + T + +P
Sbjct: 429 EGAAKEKTARMVVQLP 444
>gi|296454938|ref|YP_003662082.1| Rne/Rng family ribonuclease [Bifidobacterium longum subsp. longum
JDM301]
gi|296184370|gb|ADH01252.1| ribonuclease, Rne/Rng family [Bifidobacterium longum subsp. longum
JDM301]
Length = 1051
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 203/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 659 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 718
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 719 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 771
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 772 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 831
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 832 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 890
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 891 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 950
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 951 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 983
Score = 42.4 bits (98), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 556 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 613
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG SR ++
Sbjct: 614 GRVQNVLPSMEAAFVDIGQSRNGVL 638
>gi|269957053|ref|YP_003326842.1| ribonuclease, Rne/Rng family [Xylanimonas cellulosilytica DSM
15894]
gi|269305734|gb|ACZ31284.1| ribonuclease, Rne/Rng family [Xylanimonas cellulosilytica DSM
15894]
Length = 1043
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 9/327 (2%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVI 350
++ G V+VQV K+ +G KG LT+ L R+ +L+ G+SRK+ VER RLK +
Sbjct: 642 LKSGDSVLVQVTKDPIGHKGARLTSQVTLAGRYLVLVPGGGMTGISRKLPDVERNRLKKV 701
Query: 351 AKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPI 410
+ + PEG G+ +RT A G S EEL+ D+E L + W I A A+ +A P
Sbjct: 702 LRDIVPEGAGVIVRTAAEGASEEELRADVERLQNQWTGITTKAGRASTSA--------PA 753
Query: 411 LLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLF 470
LL + +V+D FN+ ++V + EV Y++++APDL +RV + + +F
Sbjct: 754 LLQGEPDLAIRVVRDIFNDDFSSLIVQGDGAWQEVAGYVEELAPDLRERVTSWTENTDVF 813
Query: 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNL 530
++E++ + ++V LP+GGSLVI++TEA+ IDVN G G G + E+ + NL
Sbjct: 814 SVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEAMTVIDVNTGK-FTGAGGTLEETVTRNNL 872
Query: 531 AAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGL 590
AA++I R+LRLRDIGGIIV+DFIDM +SN+ LV + + + RDR+ +V+E++ GL
Sbjct: 873 EAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGL 932
Query: 591 MEITRKRVRPSVTFMISEPCTCCQGTG 617
+++TRKRV + SE C C+G G
Sbjct: 933 VQMTRKRVGQGLVEAFSETCEHCKGRG 959
Score = 43.1 bits (100), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 67 LISKDNFVSTVILINSSICTMQR-----IAVLEDEKLVELLLEPVKSNVQCDSVYLGVVT 121
+I++ F++ ++ S+ +R IAVLED LVE + + +VYLG V
Sbjct: 538 IITEAEFLARRESVSRSMIVRERDGRTQIAVLEDGVLVEHYVSQQSQSSMVGNVYLGRVQ 597
Query: 122 KLVPNMGGAFVNIGNSRPSLM 142
++P+M AFV++G R +++
Sbjct: 598 NVLPSMEAAFVDVGKGRNAVL 618
>gi|189440477|ref|YP_001955558.1| ribonuclese G and E [Bifidobacterium longum DJO10A]
gi|189428912|gb|ACD99060.1| Ribonuclese G and E [Bifidobacterium longum DJO10A]
Length = 1022
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 203/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 630 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 689
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 690 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 742
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 743 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 802
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 803 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 861
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 862 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 921
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 922 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 954
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 527 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 584
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 585 GRVQNVLPSMEAAFVDIGQARNGVL 609
>gi|153208856|ref|ZP_01947078.1| ribonuclease, Rne/Rng family [Coxiella burnetii 'MSU Goat Q177']
gi|212218909|ref|YP_002305696.1| ribonuclease E [Coxiella burnetii CbuK_Q154]
gi|120575645|gb|EAX32269.1| ribonuclease, Rne/Rng family [Coxiella burnetii 'MSU Goat Q177']
gi|212013171|gb|ACJ20551.1| ribonuclease E [Coxiella burnetii CbuK_Q154]
Length = 720
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 198/333 (59%), Gaps = 14/333 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +++VQV KE GTKG LT + L F +L+ + R G +SR+I G ER +L+
Sbjct: 98 GQELVVQVDKEERGTKGAALTTFISLAGSFLVLMPNNPRAGGISRRIEGDERDQLRETIN 157
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L PEG GL +RT G EEL+ DL+ LL W E K AA+A P L
Sbjct: 158 QLSLPEGMGLIVRTAGLGRPKEELEWDLKILLRYW----EAVKQAAVAK------PGPYL 207
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + V+++++D + Y+ + P +R++LY + +PLF
Sbjct: 208 IHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRPQFVERLKLYREHLPLFS 267
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+F IE++I N + + LP+GGSL+I+ +EAL++ID+N G+S E+ L NL
Sbjct: 268 RFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT--RGASIEETALSTNLE 325
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA++IAR+LR+RDIGG+IV+DFIDM N+R V ++ A+ +DR+ +++ +SR GL+
Sbjct: 326 AAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQDRARIQIGRISRFGLL 385
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
E++R+R+R S+T C C G + ++E+
Sbjct: 386 EMSRQRLRSSLTRSTQIACPRCNAEGTIRSIES 418
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+ +D KL++L +E + ++Y G++T + P++G FVN G+
Sbjct: 4 MLINATQPDEVRVAITDDSKLIDLDIEIPGQEHKKSNIYKGIITSIEPSLGAVFVNYGSE 63
Query: 138 RPSLMDIKHY-REPFI 152
R + +K RE F+
Sbjct: 64 RHGFLPLKEISREYFL 79
>gi|29653829|ref|NP_819521.1| ribonuclease [Coxiella burnetii RSA 493]
gi|29541092|gb|AAO90035.1| ribonuclease E [Coxiella burnetii RSA 493]
Length = 720
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 198/333 (59%), Gaps = 14/333 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +++VQV KE GTKG LT + L F +L+ + R G +SR+I G ER +L+
Sbjct: 98 GQELVVQVDKEERGTKGAALTTFISLAGSFLVLMPNNPRAGGISRRIEGNERDQLRETIN 157
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L PEG GL +RT G EEL+ DL+ LL W E K AA+A P L
Sbjct: 158 QLSLPEGMGLIVRTAGLGRPKEELEWDLKILLRYW----EAVKQAAVAK------PGPYL 207
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + V+++++D + Y+ + P +R++LY + +PLF
Sbjct: 208 IHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRPQFVERLKLYREHLPLFS 267
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+F IE++I N + + LP+GGSL+I+ +EAL++ID+N G+S E+ L NL
Sbjct: 268 RFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT--RGASIEETALSTNLE 325
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA++IAR+LR+RDIGG+IV+DFIDM N+R V ++ A+ +DR+ +++ +SR GL+
Sbjct: 326 AAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQDRARIQIGRISRFGLL 385
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
E++R+R+R S+T C C G + ++E+
Sbjct: 386 EMSRQRLRSSLTRSTQIACPRCNAEGTIRSIES 418
Score = 47.4 bits (111), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+ +D KL++L +E + ++Y G++T + P++G FVN G+
Sbjct: 4 MLINATQPDEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSE 63
Query: 138 RPSLMDIKHY-REPFI 152
R + +K RE F+
Sbjct: 64 RHGFLPLKEISREYFL 79
>gi|322690004|ref|YP_004209738.1| ribonuclease G [Bifidobacterium longum subsp. infantis 157F]
gi|384200690|ref|YP_005586437.1| ribonuclease G [Bifidobacterium longum subsp. longum KACC 91563]
gi|419851588|ref|ZP_14374514.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 2-2B]
gi|320461340|dbj|BAJ71960.1| ribonuclease G [Bifidobacterium longum subsp. infantis 157F]
gi|338753697|gb|AEI96686.1| ribonuclease G [Bifidobacterium longum subsp. longum KACC 91563]
gi|386413305|gb|EIJ27918.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 2-2B]
Length = 1014
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 203/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 622 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 681
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 682 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 734
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 735 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 794
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 795 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 853
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 854 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 913
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 914 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 946
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 519 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 576
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 577 GRVQNVLPSMEAAFVDIGQARNGVL 601
>gi|349575680|ref|ZP_08887587.1| ribonuclease E [Neisseria shayeganii 871]
gi|348012689|gb|EGY51629.1| ribonuclease E [Neisseria shayeganii 871]
Length = 981
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 200/337 (59%), Gaps = 14/337 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G +VIVQV K+ G KG LT + L R+ +L+ + R G VSR+I G ER LK
Sbjct: 92 LREGMEVIVQVEKDERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIEGEERQELKA 151
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
L P G L RT G S+EELQ D LL W+NI ++A A E
Sbjct: 152 AMAELDVPRGMSLIARTAGIGRSVEELQWDFNYLLQLWQNI----EAAGQAHHE------ 201
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
P LL + ++DYF + ++++D+ Y +V ++ + P+ +++ YD IP
Sbjct: 202 PYLLFMESSLLIRAIRDYFRPDIGEILIDNQEVYEQVQEFMSYVMPNNVGKLKHYDDHIP 261
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I + S+ V LP+GG++VI+ TEALVS+DVN G+ E
Sbjct: 262 LFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSVDVNSARAT--RGADIEDTAFKT 319
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N+ AA+++AR++RLRD+GG+IV+DFIDM + ++R V ++ A+++DR+ V++ +LSR
Sbjct: 320 NMEAAEELARQMRLRDLGGLIVIDFIDMENPKHQRDVENTLRDALKKDRARVQMGKLSRF 379
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
GL+E++R+R++PS+ C C GTG + +E++
Sbjct: 380 GLLELSRQRLKPSLGESSHTACPRCAGTGFIRGIEST 416
Score = 40.0 bits (92), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 39/68 (57%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ + L++L +E + + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYKGVITRIEPSLEACFVDYGTD 63
Query: 138 RPSLMDIK 145
R + K
Sbjct: 64 RHGFLPFK 71
>gi|165920603|ref|ZP_02219574.1| ribonuclease, Rne/Rng family [Coxiella burnetii Q321]
gi|165916805|gb|EDR35409.1| ribonuclease, Rne/Rng family [Coxiella burnetii Q321]
Length = 720
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 124/333 (37%), Positives = 198/333 (59%), Gaps = 14/333 (4%)
Query: 294 GTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKVIAK 352
G +++VQV KE GTKG LT + L F +L+ + R G +SR+I G ER +L+
Sbjct: 98 GQELVVQVDKEERGTKGAALTTFISLAGSFLVLMPNNPRAGGISRRIEGDERDQLRETIN 157
Query: 353 TLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPIL 411
L PEG GL +RT G EEL+ DL+ LL W E K AA+A P L
Sbjct: 158 QLSLPEGMGLIVRTAGLGRPKEELEWDLKILLRYW----EAVKQAAVAK------PGPYL 207
Query: 412 LHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIPLFD 471
+H+ + ++DY + V+++++D + Y+ + P +R++LY + +PLF
Sbjct: 208 IHQESDVIIRAIRDYLRQDVEEILIDDEVAFENARHYINQVRPQFVERLKLYREHLPLFS 267
Query: 472 KFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLA 531
+F IE++I N + + LP+GGSL+I+ +EAL++ID+N G+S E+ L NL
Sbjct: 268 RFQIEQQIENAHQREIRLPSGGSLIIDHSEALIAIDINSARAT--RGASIEETALSTNLE 325
Query: 532 AAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLM 591
AA++IAR+LR+RDIGG+IV+DFIDM N+R V ++ A+ +DR+ +++ +SR GL+
Sbjct: 326 AAEEIARQLRIRDIGGLIVIDFIDMTPLRNQREVENCLRNALSQDRARIQIGRISRFGLL 385
Query: 592 EITRKRVRPSVTFMISEPCTCCQGTGRVEALET 624
E++R+R+R S+T C C G + ++E+
Sbjct: 386 EMSRQRLRSSLTRSTQIACPRCNAEGTIRSIES 418
Score = 47.8 bits (112), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+LIN++ R+A+ +D KL++L +E + ++Y G++T + P++G FVN G+
Sbjct: 4 MLINATQPDEVRVAITDDSKLIDLDIEIPGQEQKKSNIYKGIITSIEPSLGAVFVNYGSE 63
Query: 138 RPSLMDIKHY-REPFI 152
R + +K RE F+
Sbjct: 64 RHGFLPLKEISREYFL 79
>gi|71907634|ref|YP_285221.1| ribonuclease E [Dechloromonas aromatica RCB]
gi|71847255|gb|AAZ46751.1| RNAse E [Dechloromonas aromatica RCB]
Length = 870
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 144/419 (34%), Positives = 228/419 (54%), Gaps = 36/419 (8%)
Query: 216 DFDVSEVLK-----NVNGSIIDDGEP--EADFEDFLEGDHHLDGESNGFFPSKSEVPDDS 268
D D+ K N+ +I EP EA F D+ D H GF P K + S
Sbjct: 26 DLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDY-GADRH------GFLPFK----EVS 74
Query: 269 HTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILIT 328
GT+ + + +++G ++I+QV K+ G KG LT Y L R+ +L+
Sbjct: 75 RAFFQPGTEVGRA----RIQDALKEGQELIIQVDKDERGNKGAALTTYVSLAGRYLVLMP 130
Query: 329 SCDRIG-VSRKITGVERTRLKVIAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386
+ R G VSR++ G ER L+ + L+ P G L RT A G EELQ DL LL W
Sbjct: 131 NNPRGGGVSRRVDGDERAELRDVMDQLEVPNGMSLIARTAAIGRQAEELQWDLNYLLQLW 190
Query: 387 KNIMEHAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVT 446
I A+ + GA I L ++ + ++DYF + ++++D+ Y +
Sbjct: 191 TAIDGAAQQQS--------GAFLIYLEGSL--VIRAIRDYFQPDIGEILIDTDEVYEQAR 240
Query: 447 SYLQDIAPDLCDRVELYDKRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSI 506
+++ + P +RV+ Y +PLF +F IE +I +++V LP+GG++VI+ TEALV++
Sbjct: 241 AFMGTVMPGNINRVKRYRDDVPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAV 300
Query: 507 DVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVY 566
DVN G GS E+ N AA+++AR+LRLRD+GG+IV+DFIDM + N+R V
Sbjct: 301 DVNSGRAT--KGSDIEETAFKTNQEAAEELARQLRLRDLGGLIVIDFIDMENQKNQREVE 358
Query: 567 EEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETS 625
++ A+ DR+ V++ ++SR GLME++R+R+RP++ PC C GTG + + E++
Sbjct: 359 NRLRDALRFDRARVQMGKISRFGLMELSRQRLRPALAETSYIPCPRCTGTGHIRSAESA 417
Score = 44.7 bits (104), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P++ FV+ G
Sbjct: 4 MLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDYGAD 63
Query: 138 RPSLMDIKHYREPFIFP 154
R + K F P
Sbjct: 64 RHGFLPFKEVSRAFFQP 80
>gi|422323096|ref|ZP_16404136.1| ribonuclease E, partial [Achromobacter xylosoxidans C54]
gi|317401916|gb|EFV82522.1| ribonuclease E [Achromobacter xylosoxidans C54]
Length = 794
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 130/366 (35%), Positives = 212/366 (57%), Gaps = 18/366 (4%)
Query: 291 VQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIG-VSRKITGVERTRLKV 349
+++G ++IVQV KE G KG LT + L R+ +L+ + R G VSR++ G +R L+
Sbjct: 93 LREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRD 152
Query: 350 IAKTLQ-PEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
+ L+ P+G + RT G ++EELQ DL LL W I A+ + +
Sbjct: 153 TMEQLELPQGMSIIARTAGIGRNVEELQWDLSYLLQLWTAIDGAAR----------DNSA 202
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468
PIL++ + ++DYF+ ++ ++++D+ + T+++ + PD RV+ Y IP
Sbjct: 203 PILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQATAFMSVVMPDNVQRVKRYRDDIP 262
Query: 469 LFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDV 528
LF +F IE +I S+ V LP+GG++VI+ TEALVS+DVN G+ E+ L
Sbjct: 263 LFSRFQIEHQIETAYSRTVQLPSGGAIVIDHTEALVSVDVNSARST--RGADIEETALRT 320
Query: 529 NLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRH 588
N AA ++AR+LRLRD+GG+IV+DFIDM D N+R V + ++ A+ DR+ V++ ++SR
Sbjct: 321 NSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRF 380
Query: 589 GLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYNQSTFY 648
GLME++R+R+RP++ C C GTG + E+S + RLL ++ ++T
Sbjct: 381 GLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSAL----HVLRLLQEEAMKENTAA 436
Query: 649 FIRHIP 654
+P
Sbjct: 437 VHAQVP 442
Score = 45.4 bits (106), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 78 ILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNS 137
+L N++ R+A+++ +KL++L +E + ++Y GV+T++ P + FVN G
Sbjct: 4 MLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGED 63
Query: 138 RPSLMDIKHYREPFIFPPFRCRTKK 162
R + K F RT +
Sbjct: 64 RHGFLPFKEVARSFFKEGVDVRTAR 88
>gi|419846514|ref|ZP_14369756.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 1-6B]
gi|386413842|gb|EIJ28418.1| ribonuclease E/G family protein [Bifidobacterium longum subsp.
longum 1-6B]
Length = 1014
Score = 232 bits (592), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 203/333 (60%), Gaps = 12/333 (3%)
Query: 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLK 348
L + G V+VQV K+ +G KG LT+ L RF +L+ S GVSRK++ ER+RLK
Sbjct: 622 LAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLK 681
Query: 349 VIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAV 408
I + P+ G+ IRT A G S + + KDLE L+ W+ I +AK +E G
Sbjct: 682 NIVSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERI--NAKR-----EEFWHGKR 734
Query: 409 PILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYD---- 464
P LL + +V+D FN+ K++V+ + Y + YL +APDL D++E +D
Sbjct: 735 PKLLQGEPDVAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEH 794
Query: 465 KRIPLFDKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKA 524
+ +FDK++I+ ++ + ++V LP+GGS+VI++TEA+ +IDVN G G G S E+
Sbjct: 795 EGKDVFDKWSIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGR-FIGKGKSLEET 853
Query: 525 ILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSE 584
+ NL A+++IAR+LRLRDIGG++++D++DM +N+ LV + + + RDR+ +V+E
Sbjct: 854 VTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAE 913
Query: 585 LSRHGLMEITRKRVRPSVTFMISEPCTCCQGTG 617
++ GL+++TRKR+ + SE C C+G G
Sbjct: 914 VTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRG 946
Score = 41.2 bits (95), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 58 ESLLPEKGSLISKDNFVSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYL 117
+S L E+ L ++N +++ T +I+V+ED LVE + ++ ++YL
Sbjct: 519 QSQLMEQDFLARRENVDRLMVVREKEHHT--QISVVEDNVLVEHYVSDIQEVQTVGNIYL 576
Query: 118 GVVTKLVPNMGGAFVNIGNSRPSLM 142
G V ++P+M AFV+IG +R ++
Sbjct: 577 GRVQNVLPSMEAAFVDIGQARNGVL 601
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,311,238,352
Number of Sequences: 23463169
Number of extensions: 444325691
Number of successful extensions: 1315284
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4260
Number of HSP's successfully gapped in prelim test: 618
Number of HSP's that attempted gapping in prelim test: 1282320
Number of HSP's gapped (non-prelim): 16287
length of query: 664
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 515
effective length of database: 8,863,183,186
effective search space: 4564539340790
effective search space used: 4564539340790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 80 (35.4 bits)