Query 006020
Match_columns 664
No_of_seqs 224 out of 1091
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bx2_L Ribonuclease E, RNAse E 100.0 1E-124 4E-129 1038.9 47.4 443 74-653 7-452 (517)
2 3cw2_C Translation initiation 98.6 9.1E-09 3.1E-13 106.0 1.5 84 289-396 56-143 (266)
3 1q8k_A Eukaryotic translation 98.2 1.2E-06 4E-11 92.2 5.0 83 289-395 58-152 (308)
4 2eqs_A ATP-dependent RNA helic 97.5 0.00018 6.3E-09 63.6 7.4 38 108-147 8-48 (103)
5 2k52_A Uncharacterized protein 97.4 0.00039 1.3E-08 58.5 7.8 35 110-146 3-37 (80)
6 2khj_A 30S ribosomal protein S 97.4 0.00045 1.5E-08 61.5 8.4 39 107-147 26-64 (109)
7 2cqo_A Nucleolar protein of 40 97.4 0.00027 9.3E-09 64.3 6.7 38 108-147 18-56 (119)
8 2k4k_A GSP13, general stress p 97.4 0.00052 1.8E-08 63.3 8.5 37 109-147 4-40 (130)
9 2khi_A 30S ribosomal protein S 97.3 0.00072 2.5E-08 60.8 8.7 39 107-147 25-63 (115)
10 3m7n_A Putative uncharacterize 96.3 0.016 5.5E-07 56.1 9.8 43 102-147 45-100 (179)
11 1kl9_A Eukaryotic translation 96.2 0.0083 2.8E-07 58.5 7.0 35 111-147 14-50 (182)
12 3aev_A Translation initiation 96.1 0.013 4.3E-07 60.7 8.3 36 110-147 9-46 (275)
13 1y14_B B16, RPB7, DNA-directed 96.0 0.0088 3E-07 57.2 6.1 34 111-147 82-115 (171)
14 1go3_E DNA-directed RNA polyme 95.7 0.011 3.9E-07 57.0 5.9 36 109-147 78-113 (187)
15 2a19_A EIF-2- alpha, eukaryoti 95.6 0.023 7.8E-07 55.0 7.3 35 111-147 14-50 (175)
16 2b8k_G B16, DNA-directed RNA p 95.3 0.024 8.1E-07 56.7 6.5 34 111-147 82-115 (215)
17 1wi5_A RRP5 protein homolog; S 95.0 0.031 1.1E-06 50.2 5.7 34 109-144 18-51 (119)
18 2ba0_A Archeal exosome RNA bin 94.5 0.22 7.7E-06 49.9 11.2 45 101-147 44-90 (229)
19 2c35_B Human RPB7, DNA-directe 94.3 0.042 1.4E-06 52.4 5.2 34 111-147 80-113 (172)
20 2je6_I RRP4, exosome complex R 93.5 0.19 6.3E-06 51.3 8.4 44 101-146 60-106 (251)
21 2z0s_A Probable exosome comple 93.3 0.17 5.7E-06 51.0 7.6 36 109-146 63-98 (235)
22 3h0g_G DNA-directed RNA polyme 92.7 0.11 3.8E-06 49.7 5.1 36 109-147 81-116 (172)
23 2nn6_I 3'-5' exoribonuclease C 92.6 0.28 9.5E-06 48.6 8.0 26 109-136 78-103 (209)
24 1luz_A Protein K3, protein K2; 92.5 0.097 3.3E-06 45.0 4.0 35 110-147 9-46 (88)
25 1a6f_A RNAse P protein, ribonu 92.3 0.51 1.7E-05 42.6 8.7 54 333-386 48-110 (119)
26 3psi_A Transcription elongatio 92.1 0.22 7.6E-06 60.8 7.8 38 108-147 898-935 (1219)
27 1hh2_P NUSA, N utilization sub 91.9 0.24 8.1E-06 52.8 6.9 34 110-146 132-165 (344)
28 3bzc_A TEX; helix-turn-helix, 91.4 0.077 2.6E-06 62.1 2.8 37 109-147 651-687 (785)
29 3go5_A Multidomain protein wit 89.6 0.24 8.3E-06 51.3 4.3 38 109-147 66-104 (285)
30 1d6t_A Ribonuclease P, RNAse P 88.6 0.47 1.6E-05 42.7 4.9 54 333-386 47-109 (117)
31 4ayb_E DNA-directed RNA polyme 88.6 0.92 3.1E-05 43.3 7.3 36 109-147 78-113 (180)
32 1k0r_A NUSA; two component arr 88.3 0.74 2.5E-05 49.4 7.0 35 110-146 128-169 (366)
33 3cdi_A Polynucleotide phosphor 87.4 0.11 3.8E-06 60.3 0.0 39 107-147 622-660 (723)
34 2ljp_A Ribonuclease P protein 87.2 1.3 4.4E-05 39.8 6.9 55 333-387 49-113 (119)
35 3psf_A Transcription elongatio 86.7 0.13 4.4E-06 61.9 0.0 37 109-147 902-938 (1030)
36 2asb_A Transcription elongatio 84.0 2 6.7E-05 44.0 7.2 35 110-146 5-46 (251)
37 4aid_A Polyribonucleotide nucl 79.2 0.38 1.3E-05 55.8 0.0 58 88-147 601-670 (726)
38 1e3p_A Guanosine pentaphosphat 78.8 0.47 1.6E-05 55.4 0.5 38 108-147 663-700 (757)
39 1nz0_A Ribonuclease P protein 77.3 2 6.9E-05 38.5 4.1 52 333-384 49-114 (118)
40 3lcz_A YCZA, inhibitor of trap 75.4 1.9 6.5E-05 33.9 3.0 28 607-636 23-50 (53)
41 2bx9_A Anti-trap, AT, tryptoph 75.3 1.5 5E-05 34.6 2.3 26 607-632 23-50 (53)
42 2bh8_A 1B11; transcription, mo 73.1 4.7 0.00016 35.2 5.3 38 108-147 57-94 (101)
43 3go5_A Multidomain protein wit 70.7 3.9 0.00013 42.3 4.9 41 106-148 146-187 (285)
44 3lcz_A YCZA, inhibitor of trap 66.0 1.8 6.3E-05 34.0 1.0 17 604-620 6-22 (53)
45 2ja9_A Exosome complex exonucl 65.2 6.8 0.00023 37.7 5.0 35 110-146 5-40 (175)
46 2m0o_A PHD finger protein 1; t 60.2 8.5 0.00029 32.6 4.0 36 113-148 40-75 (79)
47 2bx9_A Anti-trap, AT, tryptoph 55.8 3.5 0.00012 32.4 0.9 17 604-620 6-22 (53)
48 2nn6_H Exosome complex exonucl 55.1 11 0.00039 39.4 4.9 45 101-147 82-128 (308)
49 2e5q_A PHD finger protein 19; 53.9 14 0.00046 30.2 4.1 36 113-148 21-56 (63)
50 2e5p_A Protein PHF1, PHD finge 52.0 16 0.00054 30.2 4.2 36 113-148 23-58 (68)
51 2kw0_A CCMH protein; oxidoredu 45.1 6.5 0.00022 34.2 1.0 36 608-643 24-59 (90)
52 2hl7_A Cytochrome C-type bioge 43.8 7.4 0.00025 33.4 1.1 35 609-643 28-62 (84)
53 4hcz_A PHD finger protein 1; p 37.4 42 0.0014 27.0 4.4 35 113-147 17-51 (58)
54 2ckz_B C25, DNA-directed RNA p 35.5 88 0.003 30.9 7.6 35 110-147 79-114 (218)
55 2ctt_A DNAJ homolog subfamily 31.5 12 0.00041 32.5 0.5 12 608-619 68-79 (104)
56 1nlt_A Protein YDJ1, mitochond 26.5 15 0.00052 36.8 0.3 13 606-618 79-91 (248)
57 2vkc_A NEDD4-binding protein 2 26.4 66 0.0023 29.3 4.6 50 523-573 29-78 (135)
58 1exk_A DNAJ protein; extended 26.2 20 0.00068 29.2 0.9 15 606-620 49-63 (79)
59 2nn6_G Exosome complex exonucl 25.3 86 0.0029 32.4 5.7 43 102-146 115-159 (289)
60 2ctt_A DNAJ homolog subfamily 23.8 22 0.00075 30.8 0.8 21 604-624 78-98 (104)
61 3ssc_A ECOKMCRBC, 5-methylcyto 23.5 1.3E+02 0.0045 28.9 6.1 77 319-396 60-158 (170)
62 2l69_A Rossmann 2X3 fold prote 23.0 70 0.0024 28.2 3.8 77 341-468 11-88 (134)
63 3ayh_B DNA-directed RNA polyme 22.2 96 0.0033 30.0 5.1 35 110-147 79-113 (203)
64 2id0_A Exoribonuclease 2; RNAs 22.0 59 0.002 37.1 4.0 35 111-147 557-594 (644)
65 1xhj_A Nitrogen fixation prote 21.3 1.6E+02 0.0055 25.2 5.7 65 555-636 5-69 (88)
66 2r6f_A Excinuclease ABC subuni 21.1 91 0.0031 37.5 5.5 72 548-621 221-305 (972)
No 1
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=100.00 E-value=1.3e-124 Score=1038.93 Aligned_cols=443 Identities=33% Similarity=0.567 Sum_probs=399.2
Q ss_pred CceEEEEEecCCCeEEEEEEECCEEeEEEEeeCCCCcccCCEEEEEEeeecCCcceEEecccCCcceeeeccccCCCCcC
Q 006020 74 VSTVILINSSICTMQRIAVLEDEKLVELLLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYREPFIF 153 (664)
Q Consensus 74 ~~~~ilIn~~~~~e~RvAvlEdg~L~El~iE~~~~~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~~~~~~~ 153 (664)
|+++||||+++++++|||++|||+|+||++|+......+||||+|+|+||+|+|||||||||.+++||||+++..
T Consensus 7 ~M~~ilI~~~~~ee~rvAl~e~~~L~el~iE~~~~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~----- 81 (517)
T 2bx2_L 7 HMKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIA----- 81 (517)
T ss_dssp SCEEEEEECSCTTCEEEEEEETTEEEEEEEECSSSCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSC-----
T ss_pred chheEEEEcCCCCeEEEEEEeCCEEEEEEEecCCCcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcC-----
Confidence 556899999755789999999999999999999999999999999999999999999999999999999999851
Q ss_pred CcccccchhhhcccchhhHHHHhhcccCCCCCCCCcchhhhcccccccccccCCCCCCCCCCCcchhhhhhccCCcccCC
Q 006020 154 PPFRCRTKKQEVNGSASAALEEHAVTYDNDSTSHNTEDVAEADSQDDLVQFEHNDDEEHDGDDFDVSEVLKNVNGSIIDD 233 (664)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (664)
+.+..... +
T Consensus 82 ~~~~~~~~------------------------------------------------------~----------------- 90 (517)
T 2bx2_L 82 REYFPANY------------------------------------------------------S----------------- 90 (517)
T ss_dssp GGGCC---------------------------------------------------------------------------
T ss_pred hhhhcccc------------------------------------------------------c-----------------
Confidence 11100000 0
Q ss_pred CCCCccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCEEEEEEeecCCCCCCcee
Q 006020 234 GEPEADFEDFLEGDHHLDGESNGFFPSKSEVPDDSHTSHPQGTKDSKHTPGEKTWLQVQKGTKVIVQVVKEGLGTKGPTL 313 (664)
Q Consensus 234 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~Gq~ILVQVvKE~igtKGprL 313 (664)
+ . . ..++...|++||+|+|||+|+|+|+|||+|
T Consensus 91 ------~--------~-----~----------------------------~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~l 123 (517)
T 2bx2_L 91 ------A--------H-----G----------------------------RPNIKDVLREGQEVIVQIDKEERGNKGAAL 123 (517)
T ss_dssp --------------------------------------------------CCCGGGTCCTTCEEEEEEEECCCTTCCCEE
T ss_pred ------c--------c-----c----------------------------ccchhhhccCCCEEEEEEEeeccccCCceE
Confidence 0 0 0 002335699999999999999999999999
Q ss_pred eecceeeceeEEEeeCCCce-eeecccChhHHHHHHHHHHhc-CCCCeeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006020 314 TAYPKLRSRFWILITSCDRI-GVSRKITGVERTRLKVIAKTL-QPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIME 391 (664)
Q Consensus 314 T~~ISL~GRYlVL~P~~~~I-gVSrKI~deeR~rLk~i~~~l-~~eg~GvIIRTaA~~aseeeL~~El~~L~~~W~~I~~ 391 (664)
|++|||||||+||||+++++ ||||||++++|+||++++..+ .|+++|+||||+|+|+++++|.+|+++|.+.|+.|++
T Consensus 124 Tt~isl~GRylVl~P~~~~~~giSrkI~~~eR~rLk~~~~~~~~~~~~G~IvRT~a~g~~~eel~~dl~~L~~~w~~I~~ 203 (517)
T 2bx2_L 124 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 203 (517)
T ss_dssp ESSCCEECSSEEEETTCTTCCEECTTCC------HHHHHTTSCCCTTCEEEECGGGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeeEEeccceEEEeCCCCCcCcccccCChHHHHHHHHHHHhhcCCCCceEEEEcccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 899999988899999999987 4789999999999999999999999999999999999
Q ss_pred HHHHhhhhhccCccCCcceeeeccCCchhhhhhhhcCCCccEEEEcChhHHHHHHHHHHhh-CCCccCceeeccCCcCcc
Q 006020 392 HAKSAALAADEGVEGAVPILLHRAMGQTLSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDI-APDLCDRVELYDKRIPLF 470 (664)
Q Consensus 392 ~ak~~~~~~~~g~~~~~P~lLy~~~~~~~~~lrD~~~~~v~~IvvD~~~~y~~i~~~l~~~-~p~~~~~v~ly~~~~pLF 470 (664)
+++.. ++|+|||++.+++.+++||++++++++|+||+++.|+++++|++.+ +|+...++++|.++.|||
T Consensus 204 ~~~~~----------~~P~ll~~e~~~~~r~lRD~~~~~~~~I~vd~~~~~~~~~~~~~~~~~p~~~~~v~~y~~~~plF 273 (517)
T 2bx2_L 204 AAESR----------PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 273 (517)
T ss_dssp HHHTS----------CSCEEEECCCCHHHHHHHHHCCTTEEEEEESCHHHHHHHHHHHHHTTCHHHHTTEEECCCSSCHH
T ss_pred HHhcC----------CCCEEEEecCcHHHHHHHHHccCCCCEEEECCHHHHHHHHHHHHHhcCccccceEEEEeCCCChh
Confidence 98765 5899999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCHHHHHHhHhCCceecCCCcEEEEecccceEEEEecCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCcEE
Q 006020 471 DKFNIEEEINNMLSKRVPLPNGGSLVIEQTEALVSIDVNGGHGMFGHGSSKEKAILDVNLAAAKQIARELRLRDIGGIIV 550 (664)
Q Consensus 471 ~~y~Ie~~I~~~l~rrV~L~sGGyLVIE~TEALtvIDVNSGk~~~~~~~~~e~t~l~tNlEAA~EIARQLRLRnIgGIIV 550 (664)
+.|+|+++|+++++++||||||||||||+||||||||||||++ +++.+.++|+|+||+|||+||||||||||||||||
T Consensus 274 ~~y~ie~~i~~al~~~V~L~sGGylvIe~TEALt~IDVNsG~~--~~~~~~eet~~~tNleAA~EIaRQLRLRnlgGiIv 351 (517)
T 2bx2_L 274 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA--TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIV 351 (517)
T ss_dssp HHTTCHHHHHHTTCSEEECTTSCEEEEEECSSCEEEEEECCC------CCHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HhcCHHHHHHHHhCCeEEcCCCeEEEEecCcceEEEEccCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Confidence 9999999999999999999999999999999999999999994 67789999999999999999999999999999999
Q ss_pred EEcCCCCChhhHHHHHHHHHHHHhcCCCCcEEeccCCCeeEEEeecCCCCCcchhccccCCCCCceeEEechhhHHHHHH
Q 006020 551 VDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIE 630 (664)
Q Consensus 551 IDFIdM~~~~~r~~V~~~Lk~~lk~D~~kt~V~giT~LGLvEiTRkR~r~sL~~~l~~~Cp~C~G~G~V~s~et~~~~i~ 630 (664)
||||||++++||++|++.|+++|++|+++++|+|||+||||||||||.|+||.+.++++||+|+|+|+|+|.++++++|+
T Consensus 352 IDFIdM~~~~~r~~v~~~l~~al~~Dr~k~~v~~~S~lGLvEmTRkR~r~sL~e~~~~~Cp~C~G~G~v~s~~~~~~~i~ 431 (517)
T 2bx2_L 352 IDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL 431 (517)
T ss_dssp EECCCCSSHHHHHHHHHHHHHHTTTCSSCEEEEEECTTSEEEEEECCCSCCHHHHHCCCCSSSSSSSCCCCHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHhcCCCCcEEeccCCCceEEEeecCcCcChhhhhcCcCCCcCCceeECCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCceEEEEeec
Q 006020 631 QEISRLLVSKSYNQSTFYFIRHI 653 (664)
Q Consensus 631 rei~~~~~~~~~~~~~~~~~~~~ 653 (664)
|+|.+.. ++.+...+.+..|-
T Consensus 432 R~i~~~~--~~~~~~~~~~~~~~ 452 (517)
T 2bx2_L 432 RLIEEEA--LKENTQEVHAIVPV 452 (517)
T ss_dssp HHHHHHH--HSTTEEEEEEEECH
T ss_pred HHHHHHH--hhcCCceEEEEECH
Confidence 9999874 44555677666553
No 2
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.59 E-value=9.1e-09 Score=106.04 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=60.7
Q ss_pred ccccCCCEEEEEEeecCCCCCCceeeecceeeceeEEEeeCCCceeeecccChhHHHHHHHHHHhcCCC-CeeEEEeecC
Q 006020 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPE-GFGLTIRTVA 367 (664)
Q Consensus 289 ~~lk~Gq~ILVQVvKE~igtKGprLT~~ISL~GRYlVL~P~~~~IgVSrKI~deeR~rLk~i~~~l~~e-g~GvIIRTaA 367 (664)
..++.||.|.|||.+-.. ..+++.+|.|...+ ..|+.+.+.+... ..+.|+|+.|
T Consensus 56 ~~~~vGd~V~VkVi~vd~----------------------~~g~I~LSlk~~~~--~~~~~~~~~~~~~~~~~~iv~~la 111 (266)
T 3cw2_C 56 DVLKENRKVIVKVIRVDR----------------------RKGTVDVSLKKVTD--DERRKKNLQWKKIQRLDKILELVS 111 (266)
T ss_dssp HHSCTTCEEEEEECCCCS----------------------SSCCCBEESTTSCT--THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCcCCCEEEEEEEEEeC----------------------CCCEEEEEEEecch--hhHHHHHHhccccCccceeeeehh
Confidence 468899999999987642 34567788887542 2333333333322 4577899988
Q ss_pred CCCC--HHHHHHHH-HHHHHHHHHHHHHHHHh
Q 006020 368 AGHS--LEELQKDL-EGLLSTWKNIMEHAKSA 396 (664)
Q Consensus 368 ~~as--eeeL~~El-~~L~~~W~~I~~~ak~~ 396 (664)
.+++ .+++.+++ ..|.+.|..+...++.+
T Consensus 112 e~~~~~~ee~~~~i~~~l~~~~~~~~~aFk~a 143 (266)
T 3cw2_C 112 QKLKLSEKDAWEQVAWKLEAKYGDPITAIEKA 143 (266)
T ss_dssp HHTTCCHHHHHHHTHHHHHTTSSCHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6555 99999999 99999999999998876
No 3
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=98.16 E-value=1.2e-06 Score=92.19 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=54.8
Q ss_pred ccccCCCEEEEEEeecCCCCCCceeeecceeeceeEEEeeCCCceeeecccChhHHHHHHHHHHhcCCC--CeeEEEeec
Q 006020 289 LQVQKGTKVIVQVVKEGLGTKGPTLTAYPKLRSRFWILITSCDRIGVSRKITGVERTRLKVIAKTLQPE--GFGLTIRTV 366 (664)
Q Consensus 289 ~~lk~Gq~ILVQVvKE~igtKGprLT~~ISL~GRYlVL~P~~~~IgVSrKI~deeR~rLk~i~~~l~~e--g~GvIIRTa 366 (664)
..++.||.|.|+|.+-. |..++|.+|.|.... ..|+.+.+.+... -.|.|.|++
T Consensus 58 ~~~kvGd~V~VkVl~vD----------------------~~~~rI~LSlK~~~~--~p~~~~~~~~~~G~~v~G~V~~v~ 113 (308)
T 1q8k_A 58 KLIRIGRNECVKVIRVD----------------------KEKGYIDLSKRRVSP--EEAIKCEDKFTKSKTVYSILRHVA 113 (308)
T ss_dssp TTCSSSCEEEEEEEEEE----------------------TTTTEEEEECSSCCH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCEEEEEEEEEe----------------------CCCCEEEEEEEeccc--ChHHHHHHHccCCCeeEEEEEEcc
Confidence 35889999999998754 345568888886532 2344444444332 238999998
Q ss_pred CC-CC----CHHHHHHHH-HHHHHHHHH----HHHHHHH
Q 006020 367 AA-GH----SLEELQKDL-EGLLSTWKN----IMEHAKS 395 (664)
Q Consensus 367 A~-~a----seeeL~~El-~~L~~~W~~----I~~~ak~ 395 (664)
.. |+ +.++|.+++ ..|.+.+.. +...++.
T Consensus 114 ~~~G~fi~~~~e~l~~~i~~~l~~~~g~~~~~~y~af~~ 152 (308)
T 1q8k_A 114 EVLEYTKDEQLESLFQRTAWVFDDKYKRPGYGAYDAFKH 152 (308)
T ss_dssp HHTTCCSSHHHHHHHHHTHHHHHHHTTCSSHHHHHHHHH
T ss_pred cccCCccCCCHHHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 85 99 888888888 455555554 5555544
No 4
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=0.00018 Score=63.58 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=33.5
Q ss_pred CCcccCCEEEEEEeeecCCcceEEecccC---Ccceeeecccc
Q 006020 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGN---SRPSLMDIKHY 147 (664)
Q Consensus 108 ~~~~vGnIY~GrV~kV~Pgm~AAFVDIG~---~k~aFL~~~d~ 147 (664)
....+|+||.|+|++|.| .+|||+|+. +..||+|+++.
T Consensus 8 ~~~~vG~i~~G~V~~v~~--fG~FV~l~~~~~~~~Glvhisel 48 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQ--FGCFVQLEGLRKRWEGLVHISEL 48 (103)
T ss_dssp SSCCTTCEEEEEEEEECS--SCEEEEECSSSSCCEEEECGGGT
T ss_pred ccCCCCCEEEEEEEEEec--cEEEEEEcCCCCCeEEEEEHHHC
Confidence 345789999999999999 899999996 89999998773
No 5
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=97.41 E-value=0.00039 Score=58.52 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=31.9
Q ss_pred cccCCEEEEEEeeecCCcceEEecccCCcceeeeccc
Q 006020 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKH 146 (664)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d 146 (664)
..+|++|.|+|++|.| .+|||+|+.+..||+|+++
T Consensus 3 ~~~G~iv~G~V~~v~~--~G~fV~l~~~~~Gllh~se 37 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEK--YGAFINLNEQVRGLLRPRD 37 (80)
T ss_dssp CCTTCEEEEEEEEEET--TEEEEEEETTEEEEECGGG
T ss_pred CCCCCEEEEEEEEEeC--CEEEEEECCCCEEEEEHHH
Confidence 3589999999999999 6999999999999998876
No 6
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.40 E-value=0.00045 Score=61.46 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=34.2
Q ss_pred CCCcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 107 ~~~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
.....+|+||.|+|++|.|. +|||+|+.+..|||++++.
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~--G~fV~l~~~~~Gll~~sel 64 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAK--GATVELADGVEGYLRASEA 64 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSS--CEEEECSTTCBCCBCTTCC
T ss_pred hhcCCCCCEEEEEEEEEECC--eEEEEECCCCEEEEEHHHc
Confidence 34567999999999999995 8999999999999988763
No 7
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.37 E-value=0.00027 Score=64.27 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.6
Q ss_pred CCcccCCEEEEEEeeecCCcceEEecccC-Ccceeeecccc
Q 006020 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGN-SRPSLMDIKHY 147 (664)
Q Consensus 108 ~~~~vGnIY~GrV~kV~Pgm~AAFVDIG~-~k~aFL~~~d~ 147 (664)
....+|+||.|+|++|.| .+|||+|+. ...||+|+.+.
T Consensus 18 ~~~~vG~iv~G~V~~I~~--fGaFV~l~g~~~~Glvhisel 56 (119)
T 2cqo_A 18 NLPALYTIFQGEVAMVTD--YGAFIKIPGCRKQGLVHRTHM 56 (119)
T ss_dssp CSCCTTCEEEEEEEEEET--TEEEEECTTCSSCEEEEHHHH
T ss_pred cccCCCCEEEEEEEEEeC--ceEEEEECCCcEEEEEEHHHC
Confidence 445789999999999999 599999954 68999998773
No 8
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=97.35 E-value=0.00052 Score=63.25 Aligned_cols=37 Identities=35% Similarity=0.527 Sum_probs=33.5
Q ss_pred CcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
...+|+||.|+|++|.|. +|||+|+.+..||+|+++.
T Consensus 4 ~~~vG~iv~G~V~~i~~~--G~FV~l~~~~~Glihisel 40 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAY--GAFVALDEETQGLVHISEV 40 (130)
T ss_dssp CCCTTCEEEEEEEEEETT--EEEEEEETTEEEEEEGGGT
T ss_pred cCCCCCEEEEEEEEEeCC--eEEEEECCCcEEEEEHHHC
Confidence 457899999999999996 9999999999999999874
No 9
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=97.31 E-value=0.00072 Score=60.83 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=34.6
Q ss_pred CCCcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 107 ~~~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
.....+|++|.|+|++|.| .+|||+|+.+..||+|+++.
T Consensus 25 ~~~~~~G~~~~G~V~~v~~--~G~FV~l~~~~~Glvhisel 63 (115)
T 2khi_A 25 AKRYPEGTKLTGRVTNLTD--YGCFVEIEEGVEGLVHVSEM 63 (115)
T ss_dssp SCSSCSSCEEEEEEEEEET--TEEEEECSTTCEEEEETTSS
T ss_pred hhcCCCCCEEEEEEEEEEC--CEEEEEECCCCEEEEEHHHC
Confidence 3456799999999999999 69999999999999998763
No 10
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=96.29 E-value=0.016 Score=56.05 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=33.9
Q ss_pred EEeeCCC---CcccCCEEEEEEeeecCCcceEEecccC----------Ccceeeecccc
Q 006020 102 LLEPVKS---NVQCDSVYLGVVTKLVPNMGGAFVNIGN----------SRPSLMDIKHY 147 (664)
Q Consensus 102 ~iE~~~~---~~~vGnIY~GrV~kV~Pgm~AAFVDIG~----------~k~aFL~~~d~ 147 (664)
.+.+... ... |+|+.|+|++|.+ .+|||||+. +..|+||+.+.
T Consensus 45 ~V~~~~~~~y~p~-GdiV~G~V~~V~~--~ga~V~I~~v~~~~~~~~~~~~Gll~isei 100 (179)
T 3m7n_A 45 KVESISPIPEIVK-GDVVLGRVVDLRN--SIALIEVSSKKGENRGPSNRGIGILHVSNV 100 (179)
T ss_dssp EEEESSCCCCCCT-TCEEEEEEEEECS--SEEEEEEEEETTCCSCCTTCEEEEEEGGGT
T ss_pred EEEECCCCcccCC-CCEEEEEEEEEeC--CcEEEEEccccCcccccccCeeEEEEHHHc
Confidence 4555433 345 9999999999987 689999998 78888888763
No 11
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=96.16 E-value=0.0083 Score=58.51 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=31.6
Q ss_pred ccCCEEEEEEeeecCCcceEEecc--cCCcceeeecccc
Q 006020 111 QCDSVYLGVVTKLVPNMGGAFVNI--GNSRPSLMDIKHY 147 (664)
Q Consensus 111 ~vGnIY~GrV~kV~Pgm~AAFVDI--G~~k~aFL~~~d~ 147 (664)
.+|++|.|+|++|.+ -+|||+| +.+..||+|+++.
T Consensus 14 ~~G~iv~G~V~~I~~--fGaFV~L~e~~g~eGLvhiSel 50 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAE--MGAYVSLLEYNNIEGMILLSEL 50 (182)
T ss_dssp CTTCEEEEEEEEECS--SEEEEEETTTTTEEEEEEGGGC
T ss_pred CCCCEEEEEEEEEec--cEEEEEEccCCCcEEEEEHHHC
Confidence 589999999999998 5899999 6789999999874
No 12
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=96.07 E-value=0.013 Score=60.68 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=31.9
Q ss_pred cccCCEEEEEEeeecCCcceEEeccc--CCcceeeecccc
Q 006020 110 VQCDSVYLGVVTKLVPNMGGAFVNIG--NSRPSLMDIKHY 147 (664)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVDIG--~~k~aFL~~~d~ 147 (664)
..+|++|.|+|++|.+ -+|||+++ .+..||+|+++.
T Consensus 9 p~~Gdiv~G~V~~I~~--fGaFV~L~e~~gieGlIhiSel 46 (275)
T 3aev_A 9 PEEGEFVVATVKRIHN--YGAFLELDEYPGKEAFMHISEV 46 (275)
T ss_dssp CCTTCEEEEEEEEEET--TEEEEEETTSTTCEEEEEGGGS
T ss_pred CCCCCEEEEEEEEEEC--cEEEEEECCCCCeEEEEEHHHc
Confidence 3489999999999998 49999999 589999999874
No 13
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=95.97 E-value=0.0088 Score=57.24 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=31.4
Q ss_pred ccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 111 QCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 111 ~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
.+|.+|.|+|++|.+ -+|||++|. ..||+|+++.
T Consensus 82 ~~Gev~~G~V~~v~~--fG~FV~l~~-~dglvhis~l 115 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQ--HGFEVQVGP-MKVFVTKHLM 115 (171)
T ss_dssp CTTCEEEEEEEEEET--TEEEEEETT-EEEEEEGGGS
T ss_pred CCCCEEEEEEEEEec--CEEEEEecC-eEEEEEHHHC
Confidence 499999999999999 699999999 9999999864
No 14
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=95.74 E-value=0.011 Score=56.97 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=31.7
Q ss_pred CcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
...+|.||.|+|++|.+. +|||++|. ..||+|+++.
T Consensus 78 ~~~~Gev~~G~V~~v~~~--G~fV~l~~-~eglvhis~l 113 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEF--GSFVRLGP-LDGLIHVSQI 113 (187)
T ss_dssp CCCTTCEEEEEEEEEETT--EEEEECSS-SEEEEEGGGS
T ss_pred ccCCCCEEEEEEEEEeCc--EEEEEEcC-ccEEEEhHHh
Confidence 356899999999999984 89999986 9999998874
No 15
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=95.58 E-value=0.023 Score=55.02 Aligned_cols=35 Identities=14% Similarity=0.299 Sum_probs=29.6
Q ss_pred ccCCEEEEEEeeecCCcceEEecc--cCCcceeeecccc
Q 006020 111 QCDSVYLGVVTKLVPNMGGAFVNI--GNSRPSLMDIKHY 147 (664)
Q Consensus 111 ~vGnIY~GrV~kV~Pgm~AAFVDI--G~~k~aFL~~~d~ 147 (664)
.+|.+|.|+|++|.+ -+|||+| +.+..||+|+++.
T Consensus 14 ~~G~iv~G~V~~i~~--fGaFV~L~e~~gveGLvhiSel 50 (175)
T 2a19_A 14 EIDDIVMVNVQQIAE--MGAYVKLLEYDNIEGMILLSEL 50 (175)
T ss_dssp CTTCEEEEEEEEEET--TEEEEEETTTTTCEEEEECC--
T ss_pred CCCCEEEEEEEEEec--ceEEEEEcCCCCcEEEEEHHHc
Confidence 389999999999988 5899999 4789999999874
No 16
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=95.29 E-value=0.024 Score=56.67 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=31.5
Q ss_pred ccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 111 QCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 111 ~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
.+|.+|.|+|++|.+ -+|||++|. ..||+|+...
T Consensus 82 ~vGev~~G~V~~vt~--fG~FVelg~-~dGlVhiS~l 115 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQ--HGFEVQVGP-MKVFVTKHLM 115 (215)
T ss_dssp CTTEEEEEEEEEEET--TEEEEECTT-SEEEEEGGGS
T ss_pred CCCCEEEEEEEEEec--ceEEEEecC-cEEEEEHHHC
Confidence 689999999999999 699999998 9999999864
No 17
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=94.96 E-value=0.031 Score=50.24 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=26.3
Q ss_pred CcccCCEEEEEEeeecCCcceEEecccCCcceeeec
Q 006020 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDI 144 (664)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~ 144 (664)
...+|.+|.|+|++|.+ -+||||||.+..+.++.
T Consensus 18 ~l~~G~i~~G~V~~v~~--fG~fV~l~~~~~~~l~~ 51 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLED--HGYLVDIGVDGTRAFLP 51 (119)
T ss_dssp TCCTTCEEEEEEEEECS--SEEEEECCCSSCEEEEE
T ss_pred cCCCCCEEEEEEEEEeC--ceEEEEECCCCeEEEEE
Confidence 35689999999999988 48999999444444433
No 18
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=94.50 E-value=0.22 Score=49.94 Aligned_cols=45 Identities=18% Similarity=0.365 Sum_probs=37.2
Q ss_pred EEEeeCCC--CcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 101 LLLEPVKS--NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 101 l~iE~~~~--~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
+.+.+... ...+|+|-.|+|+.|-+. .||||||....|+||+.+.
T Consensus 44 v~V~p~~~~y~p~~GDiV~G~V~~v~~~--~a~V~I~~~~~g~l~isev 90 (229)
T 2ba0_A 44 VRVIPLKGRYTPSVGDVVIGIIREVAAN--GWAVDIYSPYQAFLPVSEN 90 (229)
T ss_dssp EEEEECSSSCCCCTTCEEEEEEEEECSS--EEEEECSSSSCEEEEGGGC
T ss_pred EEEEeCCCcccCCCCCEEEEEEEEEeCC--eEEEEeCCCeEEEEEHHHc
Confidence 45555443 347999999999999886 8999999999999998763
No 19
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=94.32 E-value=0.042 Score=52.44 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=30.6
Q ss_pred ccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 111 QCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 111 ~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
.+|.+|.|+|++|.+ -+|||++|... ||+|+++.
T Consensus 80 ~~Gev~~G~V~~v~~--fG~fV~l~~~~-glvhis~l 113 (172)
T 2c35_B 80 FKGEVVDAVVTQVNK--VGLFTEIGPMS-CFISRHSI 113 (172)
T ss_dssp CTTCEEEEEEEEEET--TEEEEEETTEE-EEEEGGGS
T ss_pred CCCCEEEEEEEEEeC--CEEEEEECCEE-EEEEHHHC
Confidence 489999999999998 69999999776 99999864
No 20
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=93.50 E-value=0.19 Score=51.28 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=37.1
Q ss_pred EEEeeCCC---CcccCCEEEEEEeeecCCcceEEecccCCcceeeeccc
Q 006020 101 LLLEPVKS---NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKH 146 (664)
Q Consensus 101 l~iE~~~~---~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d 146 (664)
+.+.+... ...+|+|-.|+|++|.+. +||||||....|+||+.+
T Consensus 60 v~V~p~~~~~y~p~~GDiV~G~V~~v~~~--ga~VdI~~~~~GlL~ise 106 (251)
T 2je6_I 60 FEVIPLEGSFYYPKINDIVIGLVEDVEIY--GWVVDIKAPYKAYLPASN 106 (251)
T ss_dssp EEEEESCCSCCCCCTTCEEEEEEEEECSS--EEEEECSSSSCEEEEHHH
T ss_pred EEEEECCCcccCCCCCCEEEEEEEEEeCc--eEEEEcCCCeEEEEEHHH
Confidence 45565544 447999999999999886 999999999999999876
No 21
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=93.29 E-value=0.17 Score=50.98 Aligned_cols=36 Identities=17% Similarity=0.306 Sum_probs=32.7
Q ss_pred CcccCCEEEEEEeeecCCcceEEecccCCcceeeeccc
Q 006020 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKH 146 (664)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d 146 (664)
...+|+|-.|+|++|.+. +||||||....|+||+.+
T Consensus 63 ~p~~GDiV~G~V~~v~~~--~~~V~I~~~~~g~l~ise 98 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIM--NWFVDINSPYVAVLSVQD 98 (235)
T ss_dssp CCCTTCCEEEEEEEECSS--EEEEECSSSSCEEEEHHH
T ss_pred CCCCCCEEEEEEEEEeCC--eEEEEeCCCeEEEEEHHH
Confidence 347999999999999886 899999999999999876
No 22
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=92.68 E-value=0.11 Score=49.72 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=31.4
Q ss_pred CcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
+..+|.+|.|+|++|.+ -+|||++|.-. ||+|+.+.
T Consensus 81 ~p~~Gev~~G~V~~v~~--fG~FV~l~~~~-glVh~s~l 116 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNK--MGFFANIGPLN-VFVSSHLV 116 (172)
T ss_dssp CCCTTCEEECCCCEEET--TEEECCBTTBC-CEEEGGGS
T ss_pred ccCCCCEEEEEEEEEEc--ceEEEEeCCeE-EEEEHHHC
Confidence 35689999999999998 79999999765 99999874
No 23
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=92.61 E-value=0.28 Score=48.63 Aligned_cols=26 Identities=15% Similarity=-0.049 Sum_probs=22.5
Q ss_pred CcccCCEEEEEEeeecCCcceEEecccC
Q 006020 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGN 136 (664)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVDIG~ 136 (664)
...+|+|-.|+|++|.+ ..|||||+.
T Consensus 78 ~p~vGDvV~G~V~~v~~--~~a~V~I~~ 103 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINS--RFAKVHILY 103 (209)
T ss_dssp CCCTTCEEEEEEEEECS--SEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEEC--ceEEEEECc
Confidence 45799999999999988 469999973
No 24
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=92.51 E-value=0.097 Score=44.95 Aligned_cols=35 Identities=9% Similarity=0.062 Sum_probs=30.4
Q ss_pred cccCCEEEEEEeeecCCcceEEecccC--Ccceeeecc-cc
Q 006020 110 VQCDSVYLGVVTKLVPNMGGAFVNIGN--SRPSLMDIK-HY 147 (664)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVDIG~--~k~aFL~~~-d~ 147 (664)
..+|.+|.|+|+ |.+- +|||+++. +..||+|++ +.
T Consensus 9 ~~vG~~~~G~V~-v~~f--G~FVel~~~~~~eGLvhis~el 46 (88)
T 1luz_A 9 PNAGDVIKGRVY-EKDY--ALYIYLFDYPHFEAILAESVKM 46 (88)
T ss_dssp CCTTCEEEEEEE-EETT--EEEEEETTCTTSEEEEGGGSSC
T ss_pred CCCCCEEEEEEE-EEcc--EEEEEECCCCCeEEEEEeeHHh
Confidence 458999999999 9884 89999974 789999998 74
No 25
>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} SCOP: d.14.1.2
Probab=92.28 E-value=0.51 Score=42.58 Aligned_cols=54 Identities=28% Similarity=0.409 Sum_probs=38.9
Q ss_pred eeeecccChh-HHHHHHHHHHh--------cCCCCeeEEEeecCCCCCHHHHHHHHHHHHHHH
Q 006020 333 IGVSRKITGV-ERTRLKVIAKT--------LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386 (664)
Q Consensus 333 IgVSrKI~de-eR~rLk~i~~~--------l~~eg~GvIIRTaA~~aseeeL~~El~~L~~~W 386 (664)
+.||||+... .|+|+|.++.. +.+.++=+|.|..+..++.++|.+++..|....
T Consensus 48 ~sVsKKvg~AV~RNRiKR~lRE~~R~~~~~l~~~d~Vviar~~~~~~~~~~l~~~l~~ll~k~ 110 (119)
T 1a6f_A 48 LSVSKKIGNAVMRNRIKRLIRQAFLEEKERLKEKDYIIIARKPASQLTYEETKKSLQHLFRKS 110 (119)
T ss_dssp EEECSTTCCHHHHHHHHHHHHHHHHHHTTTBCSSEEEEEECGGGTTCCHHHHHHHHHHHHHHT
T ss_pred EEEecccCcchhHhHHHHHHHHHHHHhhccCCCCCEEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence 6679999765 57776654422 222345678888999999999999998876543
No 26
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=92.11 E-value=0.22 Score=60.83 Aligned_cols=38 Identities=5% Similarity=0.012 Sum_probs=33.6
Q ss_pred CCcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 108 ~~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
....+|.||.|+|++|.+ -+|||+||.+..||+|+++.
T Consensus 898 ~~l~~G~iv~G~V~~V~~--fGaFV~L~~gveGLVHiSel 935 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWH--NDIICTTNSEVECVVNAQRH 935 (1219)
T ss_dssp TTSCTTCEEEEEEEEECS--SCEEEECTTSCEEEECTTSS
T ss_pred hhCCCCCEEEEEEEEEec--ceEEEEeCCCceEEEEHHHc
Confidence 345689999999999998 48999999999999998774
No 27
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=91.87 E-value=0.24 Score=52.83 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=29.7
Q ss_pred cccCCEEEEEEeeecCCcceEEecccCCcceeeeccc
Q 006020 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKH 146 (664)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d 146 (664)
...|.|..|+|+++.++ .+|||+| +-.|||+.++
T Consensus 132 ~~~GeIV~G~V~ri~~~--~v~VDlG-k~EgiLp~sE 165 (344)
T 1hh2_P 132 ELKGTVTTAEVIRVMGE--WADIRIG-KLETRLPKKE 165 (344)
T ss_dssp CCTTCEEEEEEEEECSS--EEEEEET-TEEEEEEGGG
T ss_pred hcCCCEEEEEEEEEecC--cEEEEeC-CeEEEEeHHH
Confidence 34799999999999987 6999999 7899998765
No 28
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=91.44 E-value=0.077 Score=62.11 Aligned_cols=37 Identities=35% Similarity=0.491 Sum_probs=33.1
Q ss_pred CcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
...+|.+|.|+|++|.+ -+|||+||.+..||+|+++.
T Consensus 651 ~l~vG~iv~G~V~~V~~--fGaFV~l~~~~eGLVhiS~L 687 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTN--FGAFVDIGVHQDGLVHISAL 687 (785)
T ss_dssp TCCTTCBCCCEEEEEET--TEEEEECSSSSEEEEETTTS
T ss_pred hcCCCCEEEEEEEEEec--CCeEEEeCCCcEEEEEHHHc
Confidence 35689999999999988 58999999999999999874
No 29
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=89.56 E-value=0.24 Score=51.32 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=33.2
Q ss_pred CcccCCEEEEEEeeecCCcceEEecccC-Ccceeeecccc
Q 006020 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGN-SRPSLMDIKHY 147 (664)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVDIG~-~k~aFL~~~d~ 147 (664)
...+|.+..|+|++|.+. -+||||+|. ++.+|+|+++.
T Consensus 66 ~~~~G~~~~g~V~~v~~~-~GaFVdiG~~~~d~lvp~sel 104 (285)
T 3go5_A 66 TATQDQFGWGRVTEVRKD-LGVFVDTGLPDKEIVVSLDIL 104 (285)
T ss_dssp CSCSSSCEEEEEEEEETT-TEEEEECSCTTCCEEEEGGGS
T ss_pred cccCCCEEEEEEEEEccC-ceEEEEECCCCcEEEEEHHHC
Confidence 357999999999999843 489999999 79999999985
No 30
>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit, hydrolase; NMR {Staphylococcus aureus} SCOP: d.14.1.2
Probab=88.63 E-value=0.47 Score=42.66 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=38.8
Q ss_pred eeeecccChh-HHHHHHHHHHh--------cCCCCeeEEEeecCCCCCHHHHHHHHHHHHHHH
Q 006020 333 IGVSRKITGV-ERTRLKVIAKT--------LQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTW 386 (664)
Q Consensus 333 IgVSrKI~de-eR~rLk~i~~~--------l~~eg~GvIIRTaA~~aseeeL~~El~~L~~~W 386 (664)
+.||||+... .|+|+|.++.. +.+.++=+|.|..+..++.++|.+++..|....
T Consensus 47 ~sVsKKvg~AV~RNRiKR~lRE~~R~~~~~l~~~d~Vviar~~~~~~~~~~l~~~l~~ll~k~ 109 (117)
T 1d6t_A 47 ISVSKKLGNAVLRNKIKRAIRENFKVHKSHILAKDIIVIARQPAKDMTTLQIQNSLEHVLKIA 109 (117)
T ss_dssp EECCSSSCSTTHHHHHHHHHHHHHHHGGGTCCSSCEEEEECSGGGGCCTTHHHHHHTTHHHHH
T ss_pred EEEecccCcchHHhHHHHHHHHHHHHhhccCCCCCEEEEEeCCcccCCHHHHHHHHHHHHHHh
Confidence 5679999765 67776654422 222356678888999999999999998776543
No 31
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=88.61 E-value=0.92 Score=43.30 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=31.5
Q ss_pred CcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
+..+|.+|-|+|++|.+ -+|||++|. ..||+|+.+.
T Consensus 78 ~p~~Gev~~G~V~~v~~--~G~fv~l~~-~~glvh~s~l 113 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDN--YGVFVNLGP-MDGLVHISQI 113 (180)
T ss_dssp CCCTTCEEEEEEEEEET--TEEEEECSS-SEEEEEGGGS
T ss_pred eccCCCEEEEEEeeecc--ceEEEEECC-ccceEEeeec
Confidence 35689999999999998 499999996 7999998874
No 32
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=88.35 E-value=0.74 Score=49.41 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=28.9
Q ss_pred cccCCEEEEEEee----ecCCcceEEecccC---Ccceeeeccc
Q 006020 110 VQCDSVYLGVVTK----LVPNMGGAFVNIGN---SRPSLMDIKH 146 (664)
Q Consensus 110 ~~vGnIY~GrV~k----V~Pgm~AAFVDIG~---~k~aFL~~~d 146 (664)
...|.|..|.|++ +.++ .+|||+|. +-.|+|+.++
T Consensus 128 ~r~GeIVtG~V~r~~~~v~~~--~v~VdLG~~~~k~EgiLP~~E 169 (366)
T 1k0r_A 128 TREGEIVAGVIQRDSRANARG--LVVVRIGTETKASEGVIPAAE 169 (366)
T ss_dssp CCTTCEEEEEEECCHHHHHTT--CEEEEECCSSSCEEEEECGGG
T ss_pred hcCCCEEEEEEEEccccccCC--eEEEEeCCCccceEEEEcHHH
Confidence 4589999999999 9987 69999997 4688886544
No 33
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=87.42 E-value=0.11 Score=60.34 Aligned_cols=39 Identities=36% Similarity=0.635 Sum_probs=0.0
Q ss_pred CCCcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 107 KSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 107 ~~~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
.....+|.+|.|+|++|.+ -+|||+|+.+..||+|+++.
T Consensus 622 ~~~~~vG~i~~G~V~~i~~--fGaFVel~~g~eGLvHiSel 660 (723)
T 3cdi_A 622 TAEIEVGRVYTGKVTRIVD--FGAFVAIGGGKEGLVHISQI 660 (723)
T ss_dssp -----------------------------------------
T ss_pred hhhhhcCcEEEEEEEEEec--ceEEEEeCCCceEEEEHHHc
Confidence 3456799999999999998 79999999999999999874
No 34
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=87.17 E-value=1.3 Score=39.82 Aligned_cols=55 Identities=24% Similarity=0.307 Sum_probs=39.7
Q ss_pred eeeecc-cChh-HHHHHHHHHHhc----CC--C--CeeEEEeecCCCCCHHHHHHHHHHHHHHHH
Q 006020 333 IGVSRK-ITGV-ERTRLKVIAKTL----QP--E--GFGLTIRTVAAGHSLEELQKDLEGLLSTWK 387 (664)
Q Consensus 333 IgVSrK-I~de-eR~rLk~i~~~l----~~--e--g~GvIIRTaA~~aseeeL~~El~~L~~~W~ 387 (664)
+.|||| +... .|+|+|.++... .+ . ++=||.|..+..++.++|.+++..|.....
T Consensus 49 ~sVsKK~vg~AV~RNRiKR~lRe~~R~~~~~l~~~d~Vviar~~~~~~~~~~l~~~l~~ll~~~~ 113 (119)
T 2ljp_A 49 LTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALSEALEKLWRRHC 113 (119)
T ss_dssp CBCCTTTSCCHHHHHHHHHHHHHHHTTCTTTSCSSEECEEECTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEEeCccCCchhHHhHHHHHHHHHHHHHHhcCCCceEEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 667999 8765 688777655332 11 1 345788888999999999999988766553
No 35
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=86.68 E-value=0.13 Score=61.91 Aligned_cols=37 Identities=5% Similarity=0.012 Sum_probs=0.0
Q ss_pred CcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 109 NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 109 ~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
...+|.||.|+|++|.+ -+|||+|+.+..|++|+++.
T Consensus 902 ~l~~G~iv~G~V~~V~~--fGaFV~L~~gveGLVHiSel 938 (1030)
T 3psf_A 902 TFFKGSIIPVRVERFWH--NDIICTTNSEVECVVNAQRH 938 (1030)
T ss_dssp ---------------------------------------
T ss_pred HhcCCCEEEEEEEEEcc--CeEEEEeCCCcEEEEEHHHc
Confidence 34689999999999988 58999999999999998764
No 36
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=83.97 E-value=2 Score=43.95 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=28.0
Q ss_pred cccCCEEEEEEee----ecCCcceEEecccC---Ccceeeeccc
Q 006020 110 VQCDSVYLGVVTK----LVPNMGGAFVNIGN---SRPSLMDIKH 146 (664)
Q Consensus 110 ~~vGnIY~GrV~k----V~Pgm~AAFVDIG~---~k~aFL~~~d 146 (664)
...|.|..|.|.+ +.++ .+|||+|. +-.|+|+.++
T Consensus 5 ~r~GeIVtG~V~r~~~~v~~~--~ViVdlG~~~~k~EgiLP~~E 46 (251)
T 2asb_A 5 TREGEIVAGVIQRDSRANARG--LVVVRIGTETKASEGVIPAAE 46 (251)
T ss_dssp CCTTCEEEEEEECCHHHHHTT--CEEEEECSSSSCEEEEECGGG
T ss_pred hcCCCEEEEEEEEccccccCC--eEEEEeCCCCcceEEEEcHHH
Confidence 4689999999999 7776 59999997 4678885443
No 37
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=79.25 E-value=0.38 Score=55.85 Aligned_cols=58 Identities=21% Similarity=0.386 Sum_probs=0.3
Q ss_pred EEEEEEECCEEeEE------------EEeeCCCCcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 88 QRIAVLEDEKLVEL------------LLEPVKSNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 88 ~RvAvlEdg~L~El------------~iE~~~~~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
..|-+-+||.+.=+ .|+..-....+|.+|.|+|++|.+ -+|||+|+.+..||+|+++.
T Consensus 601 ~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~--fGaFVel~~g~eGLvHiSel 670 (726)
T 4aid_A 601 AKVDINDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVD--FGAFVNFFGAKDGLVHVSQI 670 (726)
T ss_dssp -------------CCSCHHHHHHHHHC---------------------------------------------
T ss_pred CceeEECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEec--cEEEEEECCCcEEEEEHHHc
Confidence 46666677754211 122223455799999999999987 69999999999999999884
No 38
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=78.75 E-value=0.47 Score=55.38 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=19.0
Q ss_pred CCcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 108 ~~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
....+|.+|.|+|++|.+ -+|||++..+..||+|+++.
T Consensus 663 ~~~~vG~i~~G~V~~i~~--fGaFV~l~~g~eGLvHiSel 700 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTT--FGAFVSLLPGKDGLLHISQI 700 (757)
T ss_dssp ----------CBEEECC---CSCEECCC---CCCCC----
T ss_pred hhcccccEEEEEEEEccc--cEEEEEEcCCcEEEEEhHHh
Confidence 345789999999999988 58999999999999999874
No 39
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=77.28 E-value=2 Score=38.48 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=36.1
Q ss_pred eeeecccChh-HHHHHHHHHHh----cC---CCC--eeEEEeecCC----CCCHHHHHHHHHHHHH
Q 006020 333 IGVSRKITGV-ERTRLKVIAKT----LQ---PEG--FGLTIRTVAA----GHSLEELQKDLEGLLS 384 (664)
Q Consensus 333 IgVSrKI~de-eR~rLk~i~~~----l~---~eg--~GvIIRTaA~----~aseeeL~~El~~L~~ 384 (664)
+.||||+... .|+|+|.++.. .. +.+ +=+|.|..+. .++.++|.+++..|..
T Consensus 49 ~sVsKKvg~AV~RNRiKR~lRE~~R~~~~~l~~g~d~Vviar~~~~~~~~~~~~~~l~~~l~~ll~ 114 (118)
T 1nz0_A 49 IVVKRKFGKATRRNKLKRWVREIFRRNKGVIPKGFDIVVIPRKKLSEEFERVDFWTVREKLLNLLK 114 (118)
T ss_dssp ECCCGGGCSHHHHHHHHHHHHHHHHHHTTTSCSSEEEEEEECHHHHHHGGGSCHHHHHHHHHHHHT
T ss_pred EEEecccCChhHHhHHHHHHHHHHHHHHhhcCCCcEEEEEecccccccccCCCHHHHHHHHHHHHH
Confidence 5679999765 58777655432 22 234 3467777777 8999999999987754
No 40
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=75.37 E-value=1.9 Score=33.93 Aligned_cols=28 Identities=29% Similarity=0.504 Sum_probs=19.0
Q ss_pred cccCCCCCceeEEechhhHHHHHHHHHHHH
Q 006020 607 SEPCTCCQGTGRVEALETSFSKIEQEISRL 636 (664)
Q Consensus 607 ~~~Cp~C~G~G~V~s~et~~~~i~rei~~~ 636 (664)
..+|+.|+|+|+|.... -+.+.+.|.+.
T Consensus 23 ~~~C~~C~G~G~v~~~~--G~~~~~~~~~~ 50 (53)
T 3lcz_A 23 PEPCPKCLGKGVILTAQ--GSTLLHFIKKH 50 (53)
T ss_dssp TEECTTTTTSSEEECHH--HHHHHHHHHHH
T ss_pred CCcCCCCCCcEEEEEEe--CchHHHHHHHH
Confidence 47899999999987765 34444555443
No 41
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=75.32 E-value=1.5 Score=34.57 Aligned_cols=26 Identities=27% Similarity=0.662 Sum_probs=18.1
Q ss_pred cccCCCCCceeEEechh--hHHHHHHHH
Q 006020 607 SEPCTCCQGTGRVEALE--TSFSKIEQE 632 (664)
Q Consensus 607 ~~~Cp~C~G~G~V~s~e--t~~~~i~re 632 (664)
..+||.|+|+|+|.... +++..+.|.
T Consensus 23 ~~~C~~C~G~G~v~~~qG~~~~g~~~~~ 50 (53)
T 2bx9_A 23 GTPCPACSGKGVILTAQGYTLLDFIQKH 50 (53)
T ss_dssp TEECTTTTTSSEEECHHHHHHHHHHHHH
T ss_pred CCCCccCCCCccEEEEecccHHHHHHHH
Confidence 36899999999988754 444444443
No 42
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=73.07 E-value=4.7 Score=35.17 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=33.4
Q ss_pred CCcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 108 SNVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 108 ~~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
....+|.+|.|.|+++.+ -+|||+|..+..|++|+++.
T Consensus 57 ~~l~~Ge~V~g~V~~i~~--fG~fv~l~~~~eGlvhis~i 94 (101)
T 2bh8_A 57 GNPQQGDRVEGKIKSITD--FGIFIGLDGGIDGLVHLSDI 94 (101)
T ss_dssp CCCCTTCEEEEEEEECCS--EEEEECTTSCEEEEEEEEEE
T ss_pred cCCCCCCEEEEEEEEeCC--cEEEEEcCCCceEEEEHHHC
Confidence 345689999999999988 59999998889999999874
No 43
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=70.73 E-value=3.9 Score=42.27 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=36.3
Q ss_pred CCCCcccCCEEEEEEeeecCCcceEEe-cccCCcceeeeccccC
Q 006020 106 VKSNVQCDSVYLGVVTKLVPNMGGAFV-NIGNSRPSLMDIKHYR 148 (664)
Q Consensus 106 ~~~~~~vGnIY~GrV~kV~Pgm~AAFV-DIG~~k~aFL~~~d~~ 148 (664)
......+|++..|+|.++.|- +||| +++.+-.||+|.++..
T Consensus 146 ~~~~~~~G~~V~g~V~~i~~~--G~fV~~i~~g~~Glih~SEl~ 187 (285)
T 3go5_A 146 PAYNNMQNQNWPAIVYRLKLS--GTFVYLPENNMLGFIHPSERY 187 (285)
T ss_dssp CCCSCCTTCEEEEEEEEEETT--EEEEEETTTTEEEEECGGGCS
T ss_pred hhhhCCCCCEEEEEEEEEeCC--cEEEEEeCCCeEEEEEHHHcc
Confidence 345667899999999999986 9999 9999999999999863
No 44
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=66.00 E-value=1.8 Score=34.00 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=14.1
Q ss_pred hhccccCCCCCceeEEe
Q 006020 604 FMISEPCTCCQGTGRVE 620 (664)
Q Consensus 604 ~~l~~~Cp~C~G~G~V~ 620 (664)
+.+..+||.|+|+|.+.
T Consensus 6 qq~~~~C~~C~GsG~~i 22 (53)
T 3lcz_A 6 DDLETTCPNCNGSGREE 22 (53)
T ss_dssp HHHEEECTTTTTSCEET
T ss_pred CceeccCcCCcccccCC
Confidence 34678999999999975
No 45
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=65.20 E-value=6.8 Score=37.74 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=31.6
Q ss_pred cccCCEEEEEEeeecCCcceEEecccC-Ccceeeeccc
Q 006020 110 VQCDSVYLGVVTKLVPNMGGAFVNIGN-SRPSLMDIKH 146 (664)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVDIG~-~k~aFL~~~d 146 (664)
..+|++=.|+|+.+.+ ..+|||||. .-.|+||+.+
T Consensus 5 P~~gDvViG~V~~v~~--~~~~VdI~~~~~~a~L~~s~ 40 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFS--DSYKVSLQNFSSSVSLSYMA 40 (175)
T ss_dssp CCTTCEEEEEEEEECS--SEEEEESSTTSCCEEEETTS
T ss_pred CCCcCEEEEEEEEEEC--cEEEEEECCCCccEEEEHHH
Confidence 4689999999999977 789999999 8999999875
No 46
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=60.25 E-value=8.5 Score=32.60 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=33.5
Q ss_pred CCEEEEEEeeecCCcceEEecccCCcceeeeccccC
Q 006020 113 DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148 (664)
Q Consensus 113 GnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~~ 148 (664)
|.-|+|.|.+|...-+.+||-.+.+-..+...+|..
T Consensus 40 GlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi~ 75 (79)
T 2m0o_A 40 GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 75 (79)
T ss_dssp SCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTBC
T ss_pred CCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeeccc
Confidence 789999999999999999999999999999998863
No 47
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=55.84 E-value=3.5 Score=32.40 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=14.1
Q ss_pred hhccccCCCCCceeEEe
Q 006020 604 FMISEPCTCCQGTGRVE 620 (664)
Q Consensus 604 ~~l~~~Cp~C~G~G~V~ 620 (664)
.....+||.|+|+|.+.
T Consensus 6 ~~~~~~C~~C~GsG~~~ 22 (53)
T 2bx9_A 6 DDLEVACPKCERAGEIE 22 (53)
T ss_dssp HHHEEECTTTTTSSEET
T ss_pred CCccccCCCCcceeccC
Confidence 45678999999999974
No 48
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=55.11 E-value=11 Score=39.35 Aligned_cols=45 Identities=11% Similarity=0.156 Sum_probs=35.7
Q ss_pred EEEeeCCC--CcccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 101 LLLEPVKS--NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 101 l~iE~~~~--~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
+.+.+... ...+|+|-.|+|+.|-+ ..||||||....|++++.+.
T Consensus 82 vsV~p~~~rY~P~vGDvViG~Vt~V~~--~~a~VdI~s~~~~~l~iS~v 128 (308)
T 2nn6_H 82 ICVKALKTRYIGEVGDIVVGRITEVQQ--KRWKVETNSRLDSVLLLSSM 128 (308)
T ss_dssp EEEEESSCCCCCCSSBCCCEEEEEEET--TEEEEECSSSSCEEEESSCC
T ss_pred EEEeeCCCccCCCCCCEEEEEEEEEeC--ceEEEEECCCcCCceechhh
Confidence 34555443 35789999999999976 56999999999999988763
No 49
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.90 E-value=14 Score=30.17 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=33.4
Q ss_pred CCEEEEEEeeecCCcceEEecccCCcceeeeccccC
Q 006020 113 DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148 (664)
Q Consensus 113 GnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~~ 148 (664)
|.-|+|+|++|.-.-+.+||-.+.+-......+|.+
T Consensus 21 GlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~ 56 (63)
T 2e5q_A 21 GLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQ 56 (63)
T ss_dssp SCEEEEEECCCCSTTSEEEEEETTSCEEEEEGGGEE
T ss_pred CCEEEEEEEEEecCCCEEEEEEccCceeEEEeeccc
Confidence 889999999999999999999999999999888864
No 50
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.96 E-value=16 Score=30.20 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=33.5
Q ss_pred CCEEEEEEeeecCCcceEEecccCCcceeeeccccC
Q 006020 113 DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHYR 148 (664)
Q Consensus 113 GnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~~ 148 (664)
|.-|+|.|++|.-.-+.+||-.+.+-.-....+|.+
T Consensus 23 GlfYlGtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~ 58 (68)
T 2e5p_A 23 GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 58 (68)
T ss_dssp SSEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEE
T ss_pred CcEEEeEEEEEecCCcEEEEEEccCCeeeeeeeccc
Confidence 889999999999999999999999999999888864
No 51
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=45.06 E-value=6.5 Score=34.25 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=30.8
Q ss_pred ccCCCCCceeEEechhhHHHHHHHHHHHHHhhcCCC
Q 006020 608 EPCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYN 643 (664)
Q Consensus 608 ~~Cp~C~G~G~V~s~et~~~~i~rei~~~~~~~~~~ 643 (664)
--||+|.|.-.-.|...++..++++|++++.....+
T Consensus 24 LRCpvCqnqsI~dSnA~iA~dlR~~Vre~l~~G~Sd 59 (90)
T 2kw0_A 24 LRCPKCQNNSIADSNSMIATDLRQKVYELMQEGKSK 59 (90)
T ss_dssp SBCSCTTSCTTTSCCCHHHHHHHHHHHHHHHHTCCH
T ss_pred CcCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCH
Confidence 369999998888888899999999999988776654
No 52
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=43.84 E-value=7.4 Score=33.43 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=30.2
Q ss_pred cCCCCCceeEEechhhHHHHHHHHHHHHHhhcCCC
Q 006020 609 PCTCCQGTGRVEALETSFSKIEQEISRLLVSKSYN 643 (664)
Q Consensus 609 ~Cp~C~G~G~V~s~et~~~~i~rei~~~~~~~~~~ 643 (664)
-||+|.|.-.-.|...++..++++|++++.....+
T Consensus 28 RCp~Cqnqsi~dSna~iA~dlR~~V~~~l~~G~sd 62 (84)
T 2hl7_A 28 RCPKCQNQDIADSNAPIAADLRKQIYGQLQQGKSD 62 (84)
T ss_dssp ECTTSSSCBTTTCCSHHHHHHHHHHHHHHHHTCCH
T ss_pred cCCCCCCCchhhcCcHHHHHHHHHHHHHHHcCCCH
Confidence 59999998888888899999999999988776654
No 53
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=37.36 E-value=42 Score=26.97 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=32.5
Q ss_pred CCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 113 DSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 113 GnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
|--|+|+|.+|-+.-+.+||-.+.+-......+|.
T Consensus 17 G~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi 51 (58)
T 4hcz_A 17 GLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDI 51 (58)
T ss_dssp SCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGE
T ss_pred CCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHc
Confidence 88999999999999999999999999988888875
No 54
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=35.47 E-value=88 Score=30.86 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=28.8
Q ss_pred cccCCEEEEEEeeecCCcceEEecc-cCCcceeeecccc
Q 006020 110 VQCDSVYLGVVTKLVPNMGGAFVNI-GNSRPSLMDIKHY 147 (664)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVDI-G~~k~aFL~~~d~ 147 (664)
..+|.+|-|+|+.|.+ -++||.+ | --.|++++.+.
T Consensus 79 p~vGEv~~G~Is~Vt~--fGifVeL~g-~~eglv~~s~l 114 (218)
T 2ckz_B 79 PFLGEIVTGWISKCTA--EGIKVSLLG-IFDDIFIPQNM 114 (218)
T ss_dssp CCTTCEEEEEEEEEET--TEEEEECTT-SCCCEEEETTT
T ss_pred CCCCCEEEEEEEEEcc--CcEEEEccC-ccceEEEcHHH
Confidence 4589999999999997 6999999 6 45778877663
No 55
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.52 E-value=12 Score=32.48 Aligned_cols=12 Identities=33% Similarity=0.994 Sum_probs=5.5
Q ss_pred ccCCCCCceeEE
Q 006020 608 EPCTCCQGTGRV 619 (664)
Q Consensus 608 ~~Cp~C~G~G~V 619 (664)
.+||.|+|+|++
T Consensus 68 ~~C~~C~G~G~~ 79 (104)
T 2ctt_A 68 STCRRCGGRGSI 79 (104)
T ss_dssp EECSSSSSSSEE
T ss_pred EECCcCCCcceE
Confidence 344444444443
No 56
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=26.50 E-value=15 Score=36.83 Aligned_cols=13 Identities=38% Similarity=1.030 Sum_probs=6.1
Q ss_pred ccccCCCCCceeE
Q 006020 606 ISEPCTCCQGTGR 618 (664)
Q Consensus 606 l~~~Cp~C~G~G~ 618 (664)
...+|+.|+|+|+
T Consensus 79 ~~~~C~~C~G~G~ 91 (248)
T 1nlt_A 79 FQTECDVCHGTGD 91 (248)
T ss_dssp EECSCTTCSSSSS
T ss_pred EEEcCCCCCCcCE
Confidence 3444555544443
No 57
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=26.41 E-value=66 Score=29.25 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCCCChhhHHHHHHHHHHHH
Q 006020 523 KAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMADDSNKRLVYEEVKKAV 573 (664)
Q Consensus 523 ~t~l~tNlEAA~EIARQLRLRnIgGIIVIDFIdM~~~~~r~~V~~~Lk~~l 573 (664)
+.+-+.|.+||.+|.++.+- ++.----||+-.|.-++....|...|.++.
T Consensus 29 ~~~~~~~~~Aa~~If~~~N~-~~~~~~~LDLHGl~v~EA~~~L~~fL~~a~ 78 (135)
T 2vkc_A 29 QKMKEANHLAAIEIFEKVNA-SLLPQNVLDLHGLHVDEALEHLMRVLEKKT 78 (135)
T ss_dssp --CCSHHHHHHHHHHHHHHH-HHGGGTEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-cCCCCceEEeCCCcHHHHHHHHHHHHHHHH
Confidence 34567899999999998654 333445899999999999988888888775
No 58
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=26.17 E-value=20 Score=29.16 Aligned_cols=15 Identities=33% Similarity=0.922 Sum_probs=11.1
Q ss_pred ccccCCCCCceeEEe
Q 006020 606 ISEPCTCCQGTGRVE 620 (664)
Q Consensus 606 l~~~Cp~C~G~G~V~ 620 (664)
...+|+.|+|+|++.
T Consensus 49 ~~~~C~~C~G~G~~~ 63 (79)
T 1exk_A 49 VQQTCPHCQGRGTLI 63 (79)
T ss_dssp EEEECTTTTTSSEEC
T ss_pred EeeECcCCCCccEEC
Confidence 446788888888864
No 59
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=25.33 E-value=86 Score=32.42 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=34.4
Q ss_pred EEeeCCC--CcccCCEEEEEEeeecCCcceEEecccCCcceeeeccc
Q 006020 102 LLEPVKS--NVQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKH 146 (664)
Q Consensus 102 ~iE~~~~--~~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d 146 (664)
.+++... -..+|+|=+|+|++|-+ ..+.|||+..-.|+|++.+
T Consensus 115 ~V~~~~~rYiP~vGDiVIG~Vt~v~~--~~~~VdI~s~~~a~L~~~~ 159 (289)
T 2nn6_G 115 WVDSQQKRYVPVKGDHVIGIVTAKSG--DIFKVDVGGSEPASLSYLS 159 (289)
T ss_dssp EEECCCSSCCCCSSEEEEEEEEEEET--TEEEEECSSSSCCCEESCS
T ss_pred EEEecCCCCCCCCCCEEEEEEEEEeC--cEEEEEECCCceeEEehhh
Confidence 4555433 34789999999999955 5699999999999998865
No 60
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.76 E-value=22 Score=30.76 Aligned_cols=21 Identities=29% Similarity=0.786 Sum_probs=16.4
Q ss_pred hhccccCCCCCceeEEechhh
Q 006020 604 FMISEPCTCCQGTGRVEALET 624 (664)
Q Consensus 604 ~~l~~~Cp~C~G~G~V~s~et 624 (664)
..+..+|+.|+|+|++....+
T Consensus 78 ~~i~~~C~~C~G~G~v~~~k~ 98 (104)
T 2ctt_A 78 SIIISPCVVCRGAGQAKQKKR 98 (104)
T ss_dssp EECSSCCSSSSSCSEECCCCS
T ss_pred eECCCcCCCCCCeeEEEEEEE
Confidence 456789999999999876544
No 61
>3ssc_A ECOKMCRBC, 5-methylcytosine-specific restriction enzyme B; protein-DNA complex; HET: DNA 5CM; 2.10A {Escherichia coli} PDB: 3ssd_A* 3sse_A*
Probab=23.48 E-value=1.3e+02 Score=28.89 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=47.5
Q ss_pred eeceeEEEeeCCCc------eeeecccCh-----------h-HHHHHHHHHHhcCCC--CeeEE--EeecCCCCCHHHHH
Q 006020 319 LRSRFWILITSCDR------IGVSRKITG-----------V-ERTRLKVIAKTLQPE--GFGLT--IRTVAAGHSLEELQ 376 (664)
Q Consensus 319 L~GRYlVL~P~~~~------IgVSrKI~d-----------e-eR~rLk~i~~~l~~e--g~GvI--IRTaA~~aseeeL~ 376 (664)
=-|.|.||+-..+. .|+|..+.. + -|.+++... ...|. +-+.| .=+.+...+.+.|.
T Consensus 60 ~~GiY~VyLf~~d~~~LyLs~GvsE~~~~~~~W~~~~~~~qtI~~~f~~r~-g~~pkrYg~S~Vyk~Yd~~~~~~~~~L~ 138 (170)
T 3ssc_A 60 SNGIYPVILYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATS-GVYPKKYGQSYYACSQKVSQGIDYTRFA 138 (170)
T ss_dssp SSSEEEEEEEEGGGTEEEEEEEECSSSCCSSCCCCSSCCCCBHHHHHHHHH-SCCCSSCTTSEEEEEEEGGGCCCHHHHH
T ss_pred ecceEEEEEEEcCCCEEEEEEEecccCCccccccccccHHHHHHHHHhhhc-CCCccccCCceEEEEEecCCCCCHHHHH
Confidence 35777777765443 477777643 2 244444331 12333 23444 34456678999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 006020 377 KDLEGLLSTWKNIMEHAKSA 396 (664)
Q Consensus 377 ~El~~L~~~W~~I~~~ak~~ 396 (664)
+||..+.+.|+.++...++.
T Consensus 139 ~DL~eiI~~Yk~~~~s~~~~ 158 (170)
T 3ssc_A 139 SMLDNIINDYKLIFNSGKSV 158 (170)
T ss_dssp HHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHhcCCcc
Confidence 99999999999998765543
No 62
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.04 E-value=70 Score=28.18 Aligned_cols=77 Identities=23% Similarity=0.408 Sum_probs=49.8
Q ss_pred hhH-HHHHHHHHHhcCCCCeeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccCCcceeeeccCCch
Q 006020 341 GVE-RTRLKVIAKTLQPEGFGLTIRTVAAGHSLEELQKDLEGLLSTWKNIMEHAKSAALAADEGVEGAVPILLHRAMGQT 419 (664)
Q Consensus 341 dee-R~rLk~i~~~l~~eg~GvIIRTaA~~aseeeL~~El~~L~~~W~~I~~~ak~~~~~~~~g~~~~~P~lLy~~~~~~ 419 (664)
|++ -..++.+++ .-|+-+||. .++.+|..-++.|..+|+
T Consensus 11 deetlrkfkdiik-----kngfkvrtv---rspqelkdsieelvkkyn-------------------------------- 50 (134)
T 2l69_A 11 DEETLRKFKDIIK-----KNGFKVRTV---RSPQELKDSIEELVKKYN-------------------------------- 50 (134)
T ss_dssp CHHHHHHHHHHHH-----HTTCEEEEE---CSHHHHHHHHHHHTTCCC--------------------------------
T ss_pred CHHHHHHHHHHHH-----hcCceEEEe---cCHHHHHHHHHHHHHHhC--------------------------------
Confidence 443 445666665 237888886 467887777776655442
Q ss_pred hhhhhhhcCCCccEEEEcChhHHHHHHHHHHhhCCCccCceeeccCCcC
Q 006020 420 LSIVQDYFNEKVKKMVVDSPRTYHEVTSYLQDIAPDLCDRVELYDKRIP 468 (664)
Q Consensus 420 ~~~lrD~~~~~v~~IvvD~~~~y~~i~~~l~~~~p~~~~~v~ly~~~~p 468 (664)
..+--++||+++..+....|++.+..... +-+|+.++.
T Consensus 51 ---------ativvvvvddkewaekairfvkslgaqvl--iiiydqdqn 88 (134)
T 2l69_A 51 ---------ATIVVVVVDDKEWAEKAIRFVKSLGAQVL--IIIYDQDQN 88 (134)
T ss_dssp ---------CEEEEEECSSHHHHHHHHHHHHHHCCCCE--EEEECSCHH
T ss_pred ---------CeEEEEEEccHHHHHHHHHHHHhcCCeEE--EEEEeCchh
Confidence 11234678888888888888888776543 456776544
No 63
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=22.19 E-value=96 Score=30.04 Aligned_cols=35 Identities=20% Similarity=0.127 Sum_probs=29.6
Q ss_pred cccCCEEEEEEeeecCCcceEEecccCCcceeeecccc
Q 006020 110 VQCDSVYLGVVTKLVPNMGGAFVNIGNSRPSLMDIKHY 147 (664)
Q Consensus 110 ~~vGnIY~GrV~kV~Pgm~AAFVDIG~~k~aFL~~~d~ 147 (664)
..+|.+|-|+|+.|.+- ++||++| --.|+.|..+.
T Consensus 79 p~~GEv~~G~Vs~vt~~--GifV~lg-~~eglv~~~~l 113 (203)
T 3ayh_B 79 PFRGEVMLGKIKSCSEE--GIRVTIS-FFDDIFIPKDM 113 (203)
T ss_dssp CCTTCEEEEEEEEEETT--EEEEECS-SCCCEEEEGGG
T ss_pred cCCCCEEEEEEEEEecc--EEEEEEe-CceEEEEcHHh
Confidence 46899999999999985 9999997 45788888775
No 64
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=21.98 E-value=59 Score=37.09 Aligned_cols=35 Identities=11% Similarity=0.277 Sum_probs=31.0
Q ss_pred ccCC--EEEEEEeeecCCcceEEecc-cCCcceeeecccc
Q 006020 111 QCDS--VYLGVVTKLVPNMGGAFVNI-GNSRPSLMDIKHY 147 (664)
Q Consensus 111 ~vGn--IY~GrV~kV~Pgm~AAFVDI-G~~k~aFL~~~d~ 147 (664)
.+|. +|-|+|++|.+ .++||.+ ..+-.||+|+.+.
T Consensus 557 ~vGe~~~f~g~V~~V~~--~G~fV~L~~~gieGlVhis~l 594 (644)
T 2id0_A 557 KAGTDTRFAAEIVDISR--GGMRVRLVDNGAIAFIPAPFL 594 (644)
T ss_dssp GTTSCCCEEEEEEEEET--TEEEEEETTTCCEEEEEGGGT
T ss_pred ccCCCceEEEEEEEEeC--CceEEEEcCCcEEEEEEchhc
Confidence 5788 99999999998 7999999 5789999999763
No 65
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=21.32 E-value=1.6e+02 Score=25.19 Aligned_cols=65 Identities=15% Similarity=0.254 Sum_probs=47.4
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCCCcEEeccCCCeeEEEeecCCCCCcchhccccCCCCCceeEEechhhHHHHHHHHHH
Q 006020 555 DMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCTCCQGTGRVEALETSFSKIEQEIS 634 (664)
Q Consensus 555 dM~~~~~r~~V~~~Lk~~lk~D~~kt~V~giT~LGLvEiTRkR~r~sL~~~l~~~Cp~C~G~G~V~s~et~~~~i~rei~ 634 (664)
++...+.=+++++.++-.++.|...+.+++|. -|.|-+ .+.-.|..|.. |.-|+..-|++.|+
T Consensus 5 ~~~~~~~I~~~L~~IRP~L~~dGGdvelv~v~-~g~V~V-----------~L~GaC~gCps-----s~~TLk~gIE~~L~ 67 (88)
T 1xhj_A 5 NPTMFDQVAEVIERLRPFLLRDGGDCTLVDVE-DGIVKL-----------QLHGACGTCPS-----STITLKAGIERALH 67 (88)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSCEEEEEECC-SSEEEE-----------EEESSCCSSCH-----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcHHHHhcCCeEEEEEEE-CCEEEE-----------EEeecCCCCcc-----hHHHHHHHHHHHHH
Confidence 33334444566677888999999999999995 465544 37788999964 56678888888887
Q ss_pred HH
Q 006020 635 RL 636 (664)
Q Consensus 635 ~~ 636 (664)
..
T Consensus 68 ~~ 69 (88)
T 1xhj_A 68 EE 69 (88)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 66
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=21.13 E-value=91 Score=37.51 Aligned_cols=72 Identities=21% Similarity=0.240 Sum_probs=42.1
Q ss_pred cEEEEcCCCCChhhHHHHHHHHHHHHhcCCCCcEEeccCCCeeEEEeecCC----CCC-------cchhc--cccCCCCC
Q 006020 548 IIVVDFIDMADDSNKRLVYEEVKKAVERDRSMVKVSELSRHGLMEITRKRV----RPS-------VTFMI--SEPCTCCQ 614 (664)
Q Consensus 548 IIVIDFIdM~~~~~r~~V~~~Lk~~lk~D~~kt~V~giT~LGLvEiTRkR~----r~s-------L~~~l--~~~Cp~C~ 614 (664)
-||||=+-.+. ..+..+.+.++.+|+.-...+.|.-+.. +..-.+.+.. +.+ +.... .-.||.|+
T Consensus 221 ~~vvdr~~~~~-~~~~rl~~s~e~al~~~~g~~~~~~~~~-~~~~~s~~~~cp~~g~~~~~~~p~~FSfN~p~GaCp~C~ 298 (972)
T 2r6f_A 221 DVVVDRIIIKD-GIAARLADSLETALKLADGKVVVDVIGE-GELLFSEKHACPYCGFSIGELEPRLFSFNSPFGACPDCD 298 (972)
T ss_dssp CEEEEEEECCS-TTHHHHHHHHHHHHHHTTSEEEEEETTT-CCEEEESSEECTTTCCEEECCCGGGGCSSSTTTBCTTTT
T ss_pred EEEEeEEEeCc-chHHHHHHHHHHHHHhCCCeEEEEecCC-cceeeeccccCCCCCCcCCCCChhhcCcCCCCCCCCCCc
Confidence 38889887764 4688999999999997555554422111 1111222211 111 11111 24599999
Q ss_pred ceeEEec
Q 006020 615 GTGRVEA 621 (664)
Q Consensus 615 G~G~V~s 621 (664)
|.|++..
T Consensus 299 G~G~~~~ 305 (972)
T 2r6f_A 299 GLGAKLE 305 (972)
T ss_dssp SCCEEEE
T ss_pred CccceEe
Confidence 9999974
Done!