Query 006021
Match_columns 664
No_of_seqs 411 out of 814
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 17:13:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006021.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006021hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08325 WLM: WLM domain; Int 100.0 3.9E-46 8.5E-51 366.9 16.4 173 137-322 3-186 (186)
2 KOG4842 Protein involved in si 100.0 4.6E-31 9.9E-36 266.3 3.2 274 7-318 3-278 (278)
3 PF09409 PUB: PUB domain; Int 99.7 6.8E-18 1.5E-22 147.2 7.7 83 569-658 2-87 (87)
4 cd01813 UBP_N UBP ubiquitin pr 99.7 1.1E-17 2.5E-22 142.3 8.2 74 8-88 1-74 (74)
5 KOG4842 Protein involved in si 99.7 1.9E-17 4.1E-22 168.1 7.6 173 151-332 41-235 (278)
6 KOG1872 Ubiquitin-specific pro 99.4 3.3E-13 7.1E-18 147.2 6.0 85 7-101 3-88 (473)
7 cd01812 BAG1_N Ubiquitin-like 99.3 3.9E-12 8.6E-17 105.5 7.9 70 8-87 1-70 (71)
8 smart00580 PUG domain in prote 98.9 1.2E-09 2.6E-14 89.5 4.7 49 575-629 1-49 (58)
9 cd01791 Ubl5 UBL5 ubiquitin-li 98.9 5.1E-09 1.1E-13 89.3 7.7 70 7-86 1-71 (73)
10 cd01805 RAD23_N Ubiquitin-like 98.9 5.5E-09 1.2E-13 88.2 7.1 70 10-89 3-75 (77)
11 cd01809 Scythe_N Ubiquitin-lik 98.8 9.5E-09 2.1E-13 85.2 7.1 69 8-86 1-70 (72)
12 cd01807 GDX_N ubiquitin-like d 98.8 8.9E-09 1.9E-13 87.0 6.7 71 9-89 2-73 (74)
13 cd01800 SF3a120_C Ubiquitin-li 98.8 6.8E-09 1.5E-13 88.5 6.0 66 13-88 4-69 (76)
14 PF00240 ubiquitin: Ubiquitin 98.8 1.3E-08 2.7E-13 84.2 6.6 66 14-89 3-68 (69)
15 cd01804 midnolin_N Ubiquitin-l 98.8 2.5E-08 5.5E-13 85.6 7.8 71 8-89 2-73 (78)
16 smart00213 UBQ Ubiquitin homol 98.7 5.2E-08 1.1E-12 78.2 6.3 64 8-81 1-64 (64)
17 cd01792 ISG15_repeat1 ISG15 ub 98.6 1.1E-07 2.3E-12 81.9 7.3 72 8-89 3-77 (80)
18 cd01796 DDI1_N DNA damage indu 98.6 1E-07 2.2E-12 80.4 6.2 68 9-85 2-69 (71)
19 cd01769 UBL Ubiquitin-like dom 98.5 2.1E-07 4.5E-12 75.7 7.0 66 12-87 2-68 (69)
20 cd01793 Fubi Fubi ubiquitin-li 98.5 1.7E-07 3.7E-12 79.3 6.6 68 9-87 2-69 (74)
21 cd01803 Ubiquitin Ubiquitin. U 98.5 2.1E-07 4.6E-12 77.9 6.8 69 9-87 2-71 (76)
22 cd01810 ISG15_repeat2 ISG15 ub 98.5 1.4E-07 3.1E-12 79.8 5.4 65 13-87 5-69 (74)
23 cd01806 Nedd8 Nebb8-like ubiq 98.5 3.8E-07 8.2E-12 76.4 7.7 70 9-88 2-72 (76)
24 cd01794 DC_UbP_C dendritic cel 98.5 2E-07 4.2E-12 78.8 5.7 62 15-86 7-68 (70)
25 cd01797 NIRF_N amino-terminal 98.4 4.4E-07 9.6E-12 78.2 6.5 71 8-88 3-74 (78)
26 PTZ00044 ubiquitin; Provisiona 98.4 5.9E-07 1.3E-11 75.8 6.9 63 14-86 8-70 (76)
27 TIGR00601 rad23 UV excision re 98.4 4.1E-07 8.8E-12 99.5 7.1 74 9-92 2-79 (378)
28 cd01798 parkin_N amino-termina 98.4 5.9E-07 1.3E-11 75.1 6.3 65 13-87 5-69 (70)
29 cd01808 hPLIC_N Ubiquitin-like 98.4 5.9E-07 1.3E-11 75.4 6.3 68 9-86 2-69 (71)
30 cd01802 AN1_N ubiquitin-like d 98.4 1.1E-06 2.4E-11 79.8 7.4 71 7-87 27-98 (103)
31 PF14560 Ubiquitin_2: Ubiquiti 98.3 1.3E-06 2.9E-11 76.2 7.5 80 7-88 1-83 (87)
32 cd01790 Herp_N Homocysteine-re 98.3 1.5E-06 3.2E-11 75.7 6.7 69 8-86 2-77 (79)
33 cd01795 USP48_C USP ubiquitin- 98.2 2.8E-06 6.1E-11 76.7 6.1 62 18-88 16-77 (107)
34 cd01799 Hoil1_N Ubiquitin-like 98.1 4.6E-06 1E-10 71.6 5.9 63 12-85 9-72 (75)
35 KOG0010 Ubiquitin-like protein 98.1 4.8E-06 1E-10 92.5 6.3 73 7-89 15-87 (493)
36 PF01863 DUF45: Protein of unk 98.0 6.1E-06 1.3E-10 81.5 5.5 62 198-264 138-199 (205)
37 cd01789 Alp11_N Ubiquitin-like 98.0 3.9E-05 8.4E-10 67.1 9.0 78 8-88 2-81 (84)
38 cd01815 BMSC_UbP_N Ubiquitin-l 97.9 1.8E-05 3.9E-10 68.3 4.9 53 24-86 18-73 (75)
39 KOG0011 Nucleotide excision re 97.6 7.2E-05 1.6E-09 79.8 6.0 73 9-91 2-77 (340)
40 COG1451 Predicted metal-depend 97.4 0.00012 2.7E-09 75.0 4.1 62 198-264 149-210 (223)
41 cd01763 Sumo Small ubiquitin-r 97.4 0.00068 1.5E-08 59.5 8.1 71 6-86 10-81 (87)
42 PLN02560 enoyl-CoA reductase 97.0 0.0017 3.8E-08 69.6 7.8 72 10-88 3-85 (308)
43 PF11976 Rad60-SLD: Ubiquitin- 96.8 0.0043 9.3E-08 51.8 7.1 69 8-86 1-71 (72)
44 cd01801 Tsc13_N Ubiquitin-like 96.7 0.0034 7.3E-08 53.8 5.7 69 9-85 2-74 (77)
45 cd00196 UBQ Ubiquitin-like pro 96.7 0.0053 1.2E-07 46.0 6.2 63 15-87 6-68 (69)
46 KOG0005 Ubiquitin-like protein 96.7 0.0022 4.7E-08 53.3 4.1 62 14-85 8-69 (70)
47 smart00731 SprT SprT homologue 96.4 0.0022 4.7E-08 61.4 3.1 34 224-257 54-93 (146)
48 KOG0003 Ubiquitin/60s ribosoma 96.2 0.0022 4.9E-08 58.8 1.8 67 9-85 3-69 (128)
49 PF11543 UN_NPL4: Nuclear pore 96.2 0.017 3.7E-07 50.4 7.0 75 4-83 1-75 (80)
50 cd01788 ElonginB Ubiquitin-lik 96.0 0.015 3.2E-07 54.2 6.1 60 8-77 3-62 (119)
51 cd01814 NTGP5 Ubiquitin-like N 95.8 0.0086 1.9E-07 55.6 3.5 47 20-76 19-72 (113)
52 PF10263 SprT-like: SprT-like 95.1 0.02 4.4E-07 54.5 3.6 59 199-258 30-97 (157)
53 KOG0004 Ubiquitin/40S ribosoma 95.1 0.023 4.9E-07 55.4 3.9 61 16-86 10-70 (156)
54 KOG2699 Predicted ubiquitin re 94.3 0.045 9.8E-07 60.6 4.4 64 576-646 310-373 (407)
55 PF08817 YukD: WXG100 protein 93.9 0.12 2.7E-06 44.4 5.4 72 7-85 2-78 (79)
56 KOG0001 Ubiquitin and ubiquiti 93.4 0.37 8E-06 38.2 7.1 65 14-88 7-71 (75)
57 KOG3206 Alpha-tubulin folding 92.8 0.21 4.5E-06 51.1 5.7 83 7-93 1-86 (234)
58 KOG4248 Ubiquitin-like protein 92.3 0.16 3.4E-06 61.7 4.9 66 10-86 5-71 (1143)
59 PRK04351 hypothetical protein; 90.7 0.25 5.3E-06 48.2 3.7 31 226-256 58-95 (149)
60 smart00666 PB1 PB1 domain. Pho 90.4 1 2.2E-05 38.3 6.8 45 7-51 1-45 (81)
61 PRK04860 hypothetical protein; 89.8 0.31 6.8E-06 48.0 3.6 31 225-255 59-96 (160)
62 KOG0006 E3 ubiquitin-protein l 88.7 0.75 1.6E-05 49.8 5.6 50 9-61 2-55 (446)
63 PF11470 TUG-UBL1: GLUT4 regul 88.4 0.81 1.8E-05 38.8 4.6 65 11-85 1-65 (65)
64 PF13881 Rad60-SLD_2: Ubiquiti 86.9 1.6 3.5E-05 40.6 6.0 66 15-90 11-89 (111)
65 KOG2699 Predicted ubiquitin re 86.5 0.33 7.1E-06 54.1 1.5 63 558-624 152-215 (407)
66 cd06396 PB1_NBR1 The PB1 domai 86.2 2.4 5.2E-05 37.5 6.4 36 8-43 1-38 (81)
67 cd01811 OASL_repeat1 2'-5' oli 85.7 3.4 7.3E-05 36.3 6.9 77 8-90 1-78 (80)
68 PF00564 PB1: PB1 domain; Int 85.4 3.1 6.7E-05 35.4 6.7 45 7-51 1-46 (84)
69 cd06407 PB1_NLP A PB1 domain i 84.5 2.3 4.9E-05 37.5 5.5 37 8-44 1-37 (82)
70 COG3091 SprT Zn-dependent meta 83.9 1.1 2.4E-05 43.9 3.6 30 227-256 59-95 (156)
71 cd06406 PB1_P67 A PB1 domain i 82.7 3.9 8.3E-05 36.2 6.1 45 8-53 3-47 (80)
72 KOG4495 RNA polymerase II tran 82.5 2.7 6E-05 38.4 5.2 44 8-51 3-46 (110)
73 KOG3493 Ubiquitin-like protein 81.0 1.2 2.5E-05 38.1 2.2 59 16-85 11-70 (73)
74 cd06397 PB1_UP1 Uncharacterize 80.5 3.3 7.2E-05 36.7 4.9 39 8-46 1-39 (82)
75 smart00166 UBX Domain present 80.3 12 0.00027 32.1 8.4 75 6-85 3-78 (80)
76 cd05992 PB1 The PB1 domain is 78.8 5.2 0.00011 33.7 5.6 44 8-51 1-45 (81)
77 KOG3931 Uncharacterized conser 77.9 3.9 8.5E-05 45.0 5.5 51 206-257 83-142 (484)
78 KOG3854 SPRT-like metalloprote 77.4 1.8 3.8E-05 49.2 2.8 40 207-251 334-380 (505)
79 PF00789 UBX: UBX domain; Int 72.6 24 0.00052 30.1 8.1 74 6-85 5-80 (82)
80 PF04450 BSP: Peptidase of pla 72.1 2.6 5.7E-05 43.1 2.4 53 209-264 74-131 (205)
81 cd06398 PB1_Joka2 The PB1 doma 71.9 14 0.0003 33.3 6.6 43 8-50 1-48 (91)
82 cd04270 ZnMc_TACE_like Zinc-de 71.0 3.1 6.7E-05 43.3 2.7 30 220-249 158-187 (244)
83 cd01772 SAKS1_UBX SAKS1-like U 70.2 24 0.00052 30.5 7.6 71 7-85 4-77 (79)
84 PF13485 Peptidase_MA_2: Pepti 69.6 4.6 9.9E-05 35.7 3.1 22 225-246 21-42 (128)
85 PF05569 Peptidase_M56: BlaR1 68.5 5.2 0.00011 42.3 3.8 25 224-248 191-215 (299)
86 cd06408 PB1_NoxR The PB1 domai 67.5 13 0.00029 33.3 5.5 42 7-51 2-43 (86)
87 PF06114 DUF955: Domain of unk 67.1 5.4 0.00012 34.9 3.0 26 224-249 37-62 (122)
88 PRK04897 heat shock protein Ht 65.2 4.3 9.4E-05 43.5 2.4 68 171-246 87-154 (298)
89 PRK03072 heat shock protein Ht 64.1 4.7 0.0001 43.0 2.4 24 223-246 121-144 (288)
90 PF14836 Ubiquitin_3: Ubiquiti 63.7 25 0.00053 31.8 6.5 63 18-85 15-77 (88)
91 PRK03982 heat shock protein Ht 63.5 4.9 0.00011 42.7 2.4 22 224-245 120-141 (288)
92 PRK03001 M48 family peptidase; 61.7 5.6 0.00012 42.2 2.4 20 225-244 120-139 (283)
93 COG4900 Predicted metallopepti 61.6 10 0.00023 35.7 3.8 50 200-254 56-113 (133)
94 COG0501 HtpX Zn-dependent prot 61.5 5.1 0.00011 41.8 2.1 65 172-247 111-175 (302)
95 COG0089 RplW Ribosomal protein 60.1 25 0.00054 32.1 5.9 37 16-52 21-57 (94)
96 PRK02870 heat shock protein Ht 59.8 6 0.00013 43.4 2.3 43 198-244 146-188 (336)
97 PF10302 DUF2407: DUF2407 ubiq 59.8 18 0.00039 33.0 5.0 48 10-60 3-56 (97)
98 PRK02391 heat shock protein Ht 59.7 6.3 0.00014 42.4 2.4 21 224-244 128-148 (296)
99 PRK05457 heat shock protein Ht 59.1 6.5 0.00014 42.0 2.4 21 224-244 129-149 (284)
100 cd01767 UBX UBX (ubiquitin reg 59.1 41 0.00089 28.6 6.9 71 8-84 3-74 (77)
101 PRK01345 heat shock protein Ht 57.4 7.1 0.00015 42.4 2.4 21 224-244 119-139 (317)
102 KOG1639 Steroid reductase requ 57.0 22 0.00047 37.9 5.6 70 9-85 2-76 (297)
103 PF01435 Peptidase_M48: Peptid 56.1 7.4 0.00016 38.6 2.1 44 200-248 65-108 (226)
104 PF13058 DUF3920: Protein of u 55.6 6.3 0.00014 37.0 1.4 20 223-242 70-89 (126)
105 cd01773 Faf1_like1_UBX Faf1 ik 54.7 56 0.0012 29.0 7.1 73 5-85 3-78 (82)
106 PRK01265 heat shock protein Ht 54.7 8.4 0.00018 42.1 2.4 21 224-244 135-155 (324)
107 PF10460 Peptidase_M30: Peptid 54.7 10 0.00022 42.2 3.1 41 204-244 114-154 (366)
108 COG5417 Uncharacterized small 51.2 74 0.0016 28.2 7.0 68 8-85 5-80 (81)
109 COG0308 PepN Aminopeptidase N 50.8 13 0.00028 45.7 3.3 29 223-251 301-329 (859)
110 cd04271 ZnMc_ADAM_fungal Zinc- 50.6 6.4 0.00014 40.7 0.7 18 231-248 147-164 (228)
111 PF13688 Reprolysin_5: Metallo 48.8 11 0.00025 37.0 2.1 27 223-249 136-162 (196)
112 cd06404 PB1_aPKC PB1 domain is 48.7 42 0.00092 30.0 5.3 37 8-44 1-37 (83)
113 KOG2982 Uncharacterized conser 48.2 27 0.00059 38.5 4.9 74 10-85 339-414 (418)
114 PF12388 Peptidase_M57: Dual-a 47.5 17 0.00037 37.6 3.2 40 204-248 113-152 (211)
115 cd01771 Faf1_UBX Faf1 UBX doma 46.7 91 0.002 27.3 7.1 71 7-85 4-77 (80)
116 PF13582 Reprolysin_3: Metallo 46.0 10 0.00023 34.3 1.2 16 231-246 109-124 (124)
117 PF13019 Telomere_Sde2: Telome 45.0 34 0.00074 34.1 4.7 39 13-51 7-49 (162)
118 PRK06437 hypothetical protein; 44.8 86 0.0019 26.4 6.5 59 6-86 3-61 (67)
119 PF14533 USP7_C2: Ubiquitin-sp 43.8 27 0.00059 35.7 3.9 44 8-51 19-69 (213)
120 cd04272 ZnMc_salivary_gland_MP 43.6 14 0.0003 37.5 1.8 20 229-248 145-164 (220)
121 PF14521 Aspzincin_M35: Lysine 43.4 13 0.00028 36.0 1.5 16 227-242 94-109 (148)
122 TIGR02414 pepN_proteo aminopep 42.4 14 0.00031 45.3 2.0 21 224-244 278-298 (863)
123 PRK14015 pepN aminopeptidase N 42.2 14 0.00031 45.4 1.9 20 225-244 292-311 (875)
124 PF12725 DUF3810: Protein of u 41.8 16 0.00035 39.8 2.0 36 224-259 191-228 (318)
125 cd04269 ZnMc_adamalysin_II_lik 40.9 19 0.00042 35.4 2.4 23 226-248 128-150 (194)
126 TIGR02412 pepN_strep_liv amino 40.4 17 0.00037 44.4 2.2 18 226-243 284-301 (831)
127 PF13574 Reprolysin_2: Metallo 39.7 16 0.00035 36.0 1.5 20 229-248 111-130 (173)
128 TIGR02411 leuko_A4_hydro leuko 38.7 17 0.00036 42.9 1.7 16 229-244 279-294 (601)
129 cd04267 ZnMc_ADAM_like Zinc-de 38.6 16 0.00034 36.0 1.2 22 227-248 131-152 (192)
130 cd01770 p47_UBX p47-like ubiqu 38.4 1.4E+02 0.0029 26.1 6.9 68 7-83 4-75 (79)
131 cd06411 PB1_p51 The PB1 domain 37.9 63 0.0014 28.7 4.7 42 10-52 1-42 (78)
132 PRK09908 xanthine dehydrogenas 37.3 54 0.0012 32.6 4.7 40 4-44 3-42 (159)
133 PF10023 DUF2265: Predicted am 36.3 47 0.001 36.8 4.5 43 225-267 161-204 (337)
134 PRK08364 sulfur carrier protei 36.2 1.7E+02 0.0036 24.7 6.9 58 10-86 5-64 (70)
135 PHA02456 zinc metallopeptidase 36.0 19 0.00041 34.0 1.3 15 228-242 78-92 (141)
136 PF01433 Peptidase_M1: Peptida 35.5 26 0.00056 37.8 2.4 20 225-244 291-310 (390)
137 PF01447 Peptidase_M4: Thermol 35.3 22 0.00048 34.7 1.7 21 221-241 127-147 (150)
138 PRK05738 rplW 50S ribosomal pr 35.2 69 0.0015 28.9 4.7 37 16-52 20-56 (92)
139 KOG1046 Puromycin-sensitive am 35.1 23 0.0005 43.7 2.2 28 223-250 318-346 (882)
140 PF06262 DUF1025: Possibl zinc 35.0 26 0.00055 32.0 1.9 16 226-241 70-85 (97)
141 TIGR03636 L23_arch archaeal ri 34.4 66 0.0014 28.3 4.3 36 17-52 15-50 (77)
142 PRK08453 fliD flagellar cappin 33.8 53 0.0012 39.5 4.8 32 7-38 128-159 (673)
143 PF02102 Peptidase_M35: Deuter 33.3 22 0.00047 39.6 1.5 21 228-248 296-318 (359)
144 CHL00030 rpl23 ribosomal prote 33.2 69 0.0015 29.1 4.4 37 16-52 19-55 (93)
145 PF13699 DUF4157: Domain of un 33.2 20 0.00042 31.4 0.9 15 229-243 61-75 (79)
146 PRK05659 sulfur carrier protei 33.0 1.5E+02 0.0032 24.2 6.1 59 11-86 2-60 (66)
147 KOG4250 TANK binding protein k 33.0 66 0.0014 38.8 5.3 39 13-51 321-359 (732)
148 PF10463 Peptidase_U49: Peptid 33.0 28 0.0006 35.9 2.1 34 229-262 101-134 (206)
149 KOG2719 Metalloprotease [Gener 32.0 43 0.00093 38.1 3.5 68 174-243 227-294 (428)
150 PF08919 F_actin_bind: F-actin 31.7 60 0.0013 30.4 3.8 73 547-627 7-85 (110)
151 PF00276 Ribosomal_L23: Riboso 31.3 52 0.0011 29.4 3.2 36 17-52 21-56 (91)
152 PRK14548 50S ribosomal protein 30.8 75 0.0016 28.4 4.1 37 16-52 21-57 (84)
153 PF01421 Reprolysin: Reprolysi 30.7 36 0.00077 33.8 2.4 25 224-248 126-150 (199)
154 PRK06488 sulfur carrier protei 29.2 1.7E+02 0.0037 24.0 5.8 60 10-87 1-60 (65)
155 PRK12280 rplW 50S ribosomal pr 29.2 1.8E+02 0.0039 29.1 6.8 78 16-94 22-99 (158)
156 cd01774 Faf1_like2_UBX Faf1 ik 28.9 2.8E+02 0.006 24.5 7.4 74 7-85 4-82 (85)
157 PF13203 DUF2201_N: Putative m 28.3 40 0.00087 35.6 2.4 20 225-244 56-75 (292)
158 PF00413 Peptidase_M10: Matrix 27.2 33 0.00072 32.1 1.4 24 224-247 100-123 (154)
159 PF15639 Tox-MPTase3: Metallop 26.9 26 0.00057 33.7 0.6 13 228-240 99-111 (135)
160 PF09379 FERM_N: FERM N-termin 26.8 82 0.0018 26.4 3.6 29 15-43 5-33 (80)
161 cd04273 ZnMc_ADAMTS_like Zinc- 26.4 16 0.00035 36.7 -1.0 20 229-248 140-159 (207)
162 COG2856 Predicted Zn peptidase 25.8 49 0.0011 34.3 2.4 40 225-264 68-113 (213)
163 PF12140 DUF3588: Protein of u 25.7 1.8E+02 0.0039 27.7 5.9 35 5-39 67-101 (118)
164 cd00203 ZnMc Zinc-dependent me 25.0 36 0.00077 32.2 1.2 22 227-248 94-115 (167)
165 KOG2689 Predicted ubiquitin re 24.7 1.6E+02 0.0034 32.0 5.9 72 7-85 210-284 (290)
166 cd06410 PB1_UP2 Uncharacterize 24.5 1.5E+02 0.0032 27.1 4.9 32 14-45 20-51 (97)
167 PF14891 Peptidase_M91: Effect 24.4 32 0.00068 34.0 0.7 19 230-248 104-122 (174)
168 COG4219 MecR1 Antirepressor re 24.4 45 0.00098 36.7 1.9 21 224-244 185-205 (337)
169 cd01775 CYR1_RA Ubiquitin doma 24.1 2E+02 0.0044 26.6 5.7 43 9-51 4-48 (97)
170 PF09768 Peptidase_M76: Peptid 23.0 62 0.0013 32.5 2.5 19 222-240 64-82 (173)
171 cd04268 ZnMc_MMP_like Zinc-dep 22.5 61 0.0013 30.7 2.2 22 227-248 92-113 (165)
172 PRK11433 aldehyde oxidoreducta 22.5 1.3E+02 0.0029 31.4 4.8 37 7-43 49-85 (217)
173 PRK05863 sulfur carrier protei 22.4 2.9E+02 0.0062 22.9 6.0 58 11-86 2-59 (65)
174 PRK09672 phage exclusion prote 21.8 76 0.0017 34.7 3.0 36 229-264 165-200 (305)
175 cd04279 ZnMc_MMP_like_1 Zinc-d 21.8 61 0.0013 30.9 2.1 23 226-248 101-123 (156)
176 KOG4583 Membrane-associated ER 21.7 68 0.0015 35.6 2.6 55 3-60 5-64 (391)
177 PRK12765 flagellar capping pro 21.3 1.6E+02 0.0034 35.0 5.7 35 6-40 131-165 (595)
178 PF12754 Blt1: Cell-cycle cont 21.3 32 0.00068 37.6 0.0 46 7-52 78-144 (309)
179 PF07998 Peptidase_M54: Peptid 20.9 66 0.0014 32.9 2.2 49 200-248 113-164 (194)
180 PF03633 Glyco_hydro_65C: Glyc 20.7 1.5E+02 0.0032 23.5 3.8 21 6-26 8-28 (54)
181 cd06409 PB1_MUG70 The MUG70 pr 20.5 1.9E+02 0.0042 26.0 4.8 31 15-45 9-39 (86)
182 PF14247 DUF4344: Domain of un 20.4 50 0.0011 34.4 1.2 21 226-246 89-109 (220)
No 1
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=100.00 E-value=3.9e-46 Score=366.91 Aligned_cols=173 Identities=43% Similarity=0.583 Sum_probs=151.5
Q ss_pred eeeeeeccCCCCCCCCCHHHHHHHHHHHhcCcchHHHHhhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEee
Q 006021 137 FCDFRTLQIPGVELNPPASEALKIMHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLR 216 (664)
Q Consensus 137 f~~i~~l~lp~~~~~p~~~~Al~~L~rlA~~~~v~piM~~~~w~V~~L~E~~P~~~~~~s~~~lLGlN~N~G~~I~LRLR 216 (664)
++.|++|+ .+|++++|+++|+|||++ |+|||++|+|+|++|+||+|.+ ..+||+|+|+|++|+||||
T Consensus 3 v~~I~~L~-----~~p~~~~A~~lL~rlA~~--v~pIM~~~~~~V~~L~E~~P~~------~~llG~N~N~G~~I~lrLR 69 (186)
T PF08325_consen 3 VHFIKVLP-----NLPDEEEALELLERLAAD--VKPIMRKHGWRVGSLEEFYPNG------ERLLGLNVNKGEKICLRLR 69 (186)
T ss_pred eeEEeeCC-----CCcCHHHHHHHHHHHHHH--HHHHHHHcCcccCeeeccCCCC------CCCcceecCCCcEEEEEeC
Confidence 67788873 359999999999999999 9999999999999999999996 4599999999999999999
Q ss_pred cCCCCCccchHHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHhhhh------ccCCccccCCCCCCCccccccccC
Q 006021 217 TDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALDWT------KSRGHTLSGVRHTSHHEDDLFVGD 290 (664)
Q Consensus 217 t~d~~~Flp~~~I~~tllHELaH~v~g~Hd~~F~~L~~~L~~E~~~l~~~------~~~g~~Lgg~~~~~~~~~~~~~~~ 290 (664)
+++.++|+||++|+.|||||||||+|++||++||+||++|.+||++++|+ .+.|++|||.........+.....
T Consensus 70 ~~~~~~fl~~~~i~~t~lHELaH~~~~~H~~~F~~l~~~l~~e~~~l~~~G~~~gf~~~G~~l~~~~~~~~~~~~~~~~~ 149 (186)
T PF08325_consen 70 TPDDGGFLPYETILGTMLHELAHNVHGPHDDKFWKLLDELRKECEELDAKGYTEGFWSSGRRLGGSSGQPSEERELRGNG 149 (186)
T ss_pred CCCCCCEeeHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHhcCCccccCCCCcccCCCCcccchhhhhhccc
Confidence 97659999999999999999999999999999999999999999999996 789999998765432111122333
Q ss_pred CCCCCccccCCCC-----CCCccHHHHHHHHHHHHHh
Q 006021 291 SRSFSQKLGGNIS-----DQLASARASSVAAAYRRLA 322 (664)
Q Consensus 291 ~~~~g~~LGG~~~-----~~~~~~Re~~a~AAerR~~ 322 (664)
..+++++|||++. .++.++|+++|+||+||++
T Consensus 150 ~~~~~~~LgG~s~~~~~~~~~~~~Re~~a~AAerR~~ 186 (186)
T PF08325_consen 150 LSGGGQRLGGGSSSRPRKAQPKSPREAAAAAAERRLR 186 (186)
T ss_pred cCCCCeeCCCCCCCCCCcCCCcCHHHHHHHHHHhhcC
Confidence 4668999999975 4678999999999999974
No 2
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=4.6e-31 Score=266.31 Aligned_cols=274 Identities=33% Similarity=0.394 Sum_probs=215.2
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeecc--CCCCCCCCCCCcccccccccccccCCCceEE
Q 006021 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQ--NKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk--~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
.|.+...|.|..+-++++.+.+|.|.+..|+++++|.++.-|++++. .++..+..|+.+++..+++ +...+.|.
T Consensus 3 ~i~~~~~~~gn~i~ls~~~~~ri~D~~~~l~K~~~vss~~~kll~~~llk~iahl~~p~mkEh~f~vt----i~~Dk~ir 78 (278)
T KOG4842|consen 3 AIKTEGIKSGNAIYLSMAGSQRIPDKNPHLQKVAVVSSKPNKLLALNLLKEIAHLVSPLMKEHHFKVT----ILVDKYIR 78 (278)
T ss_pred cEEEEEEecCcEEEEEeccccccCCCCcccceeeeeccchHHHHhhhhhhhhhhhhhhhhccccceeE----EeehhHHH
Confidence 46788899999999999999999999999999999999999999854 3444455555555432221 22334444
Q ss_pred EeccchhhhhHhhhhhhhhhcccCccHHHHHHHHhhhcCCCCCCCCCCCCceeeeeeeccCCCCCCCCCHHHHHHHHHHH
Q 006021 85 MMGVSEDEVDKVLQNEKADLRIAGFDEEEKRLRQRMLDRTNAPLKLPQGQYMFCDFRTLQIPGVELNPPASEALKIMHML 164 (664)
Q Consensus 85 LmGs~~~eI~~v~~~~~~~~ri~~f~~~~~r~~~r~~~r~~~~~~~~~~~y~f~~i~~l~lp~~~~~p~~~~Al~~L~rl 164 (664)
+++-...+|......+-.. | -+|++.+ + .+...+.+.|+|-.+..|+. |.+.+|++.|++|
T Consensus 79 nq~~sg~nvn~gski~lsl-r-~~~~e~~----------~-lp~e~pmgtylhel~h~lqg------Phd~rfl~~L~~L 139 (278)
T KOG4842|consen 79 NQRLSGMNVNHGSKIMLSL-R-CSTDEFQ----------F-LPMECPMGTYLHELTHNLQG------PHDKRFLNKLDEL 139 (278)
T ss_pred hhhhhccccCCcceEEEEe-e-ccccccc----------c-ccccccchhhhhhhhhhhcC------CChHHHHHHHHHH
Confidence 4444444443332222111 1 1121111 1 12335689999999988864 6699999999999
Q ss_pred hcCcchHHHHhhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCC
Q 006021 165 AADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 165 A~~~~v~piM~~~~w~V~~L~E~~P~~~~~~s~~~lLGlN~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~g~ 244 (664)
+++++|..+|-.|+|.||.|+|+.|..++++++.++||+|.|+| +|.+|||+++..+||.|+.|-.|+.|||+|+|++.
T Consensus 140 rad~gii~~mg~hrW~vg~l~el~g~~nt~v~~~~tLg~stnqG-~i~lrlrtdrkkgfR~y~tissTl~heLtr~v~~e 218 (278)
T KOG4842|consen 140 RADQGIIEQMGLHRWFVGNLQELGGRANTRVNRYPTLGISTNQG-VIVLRLRTDRKKGFRHYETISSTLRHELTREVAAE 218 (278)
T ss_pred hhchhHHHHhcccceechhhhhcccccceeecCccceeeccccc-eEEEecccchhcccccCCCchHHHHhhhhhhHhhh
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHhhhhccCCccccCCCCCCCccccccccCCCCCCccccCCCCCCCccHHHHHHHHHH
Q 006021 245 HDANFYGLDKQLNQEAVALDWTKSRGHTLSGVRHTSHHEDDLFVGDSRSFSQKLGGNISDQLASARASSVAAAY 318 (664)
Q Consensus 245 Hd~~F~~L~~~L~~E~~~l~~~~~~g~~Lgg~~~~~~~~~~~~~~~~~~~g~~LGG~~~~~~~~~Re~~a~AAe 318 (664)
|+..||+|..++.+|...++|..+.|++...... --.+.+|+.......+.|+...+|||
T Consensus 219 hde~fyrLdrql~kek~~ad~~~srg~~~sde~~--------------~vdq~de~~p~D~l~~~rdl~~aaae 278 (278)
T KOG4842|consen 219 HDERFYRLDRQLGKEKNNADQIISRGISSSDEVV--------------IVDQDDEVLPGDTLIEVRDLTYAAAE 278 (278)
T ss_pred hhhHHHHHHHHhCcccchhhhhcCCCceeeccee--------------ecccccCCCcccccchhhhhhhhhcC
Confidence 9999999999999999999999888887654321 12456677655667788888888875
No 3
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=99.73 E-value=6.8e-18 Score=147.22 Aligned_cols=83 Identities=37% Similarity=0.527 Sum_probs=67.3
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcCCcccccccccCCcceEEEEc---C
Q 006021 569 SPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLK---R 645 (664)
Q Consensus 569 ~~~~~~~al~tL~Kil~NIi~~P~e~KyRrIR~sN~~F~~kV~~~~Ga~e~L~a~GF~e~~~~d~~~~~e~~LVl~---~ 645 (664)
+.++..+|++||.+||.||+.||+++|||+||++|++|+++|++++||.+||.++||++.+ .++||+|+ .
T Consensus 2 ~~~~~~~al~~L~~il~NI~~~P~~~kyR~Ir~~N~~f~~~i~~~~g~~~~L~~~GF~~~~-------~~~~~vl~~~~~ 74 (87)
T PF09409_consen 2 DPEAFQKALETLEKILSNILSNPNEEKYRRIRLSNKTFQEKILPVPGARELLEALGFREVT-------DEEFLVLPEDSE 74 (87)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHSTT-CGGGEEETTSHHHHHHTTTSTTHHHHHHHHT-EE----------SSEEE----TT
T ss_pred CHHHHHHHHHHHHHHHHHHccCCCcccceEeecCcchHHHHhcCChhHHHHHHHCCCEEec-------CCCEEEEecCCc
Confidence 4578899999999999999999999999999999999999999999999999999999996 26899999 4
Q ss_pred CCHHHHHHHHhhh
Q 006021 646 NDLALLWLAKSSL 658 (664)
Q Consensus 646 ~d~~~L~~ak~~L 658 (664)
.++..|+.+.+.|
T Consensus 75 ~~~~~l~~~~~~l 87 (87)
T PF09409_consen 75 PDLQHLQKALSEL 87 (87)
T ss_dssp S-HHHHHHHHH--
T ss_pred CCHHHHHHHHhcC
Confidence 4888888877654
No 4
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.72 E-value=1.1e-17 Score=142.28 Aligned_cols=74 Identities=22% Similarity=0.369 Sum_probs=66.1
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006021 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
|+|+|+|+|++|+|++++++||++||++|+++|||||++||||+++.+|+.+++ ..+|+++++++|.+|||||
T Consensus 1 ~~i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D-------~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAED-------DVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCC-------CcCHHHcCCCCCCEEEEEe
Confidence 579999999999999999999999999999999999999999986446765442 2568899999999999999
Q ss_pred c
Q 006021 88 V 88 (664)
Q Consensus 88 s 88 (664)
|
T Consensus 74 s 74 (74)
T cd01813 74 T 74 (74)
T ss_pred C
Confidence 7
No 5
>KOG4842 consensus Protein involved in sister chromatid separation and/or segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.9e-17 Score=168.11 Aligned_cols=173 Identities=23% Similarity=0.251 Sum_probs=131.9
Q ss_pred CCCHHHHHHHHHHHhcCcchHHHHhhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEeecC-CCCCccchHHH
Q 006021 151 NPPASEALKIMHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTD-DLKGFRKYESI 229 (664)
Q Consensus 151 ~p~~~~Al~~L~rlA~~~~v~piM~~~~w~V~~L~E~~P~~~~~~s~~~lLGlN~N~G~~I~LRLRt~-d~~~Flp~~~I 229 (664)
.|....+..+|+++|+. +.|+|++|+|.|-.+.++++.+ ..++|+|||+|.+|.|+||.. +...|+|++.+
T Consensus 41 ~~~kll~~~llk~iahl--~~p~mkEh~f~vti~~Dk~irn------q~~sg~nvn~gski~lslr~~~~e~~~lp~e~p 112 (278)
T KOG4842|consen 41 KPNKLLALNLLKEIAHL--VSPLMKEHHFKVTILVDKYIRN------QRLSGMNVNHGSKIMLSLRCSTDEFQFLPMECP 112 (278)
T ss_pred chHHHHhhhhhhhhhhh--hhhhhccccceeEEeehhHHHh------hhhhccccCCcceEEEEeecccccccccccccc
Confidence 36789999999999998 8899999999999999999986 679999999999999999964 55779999999
Q ss_pred HHHHHHHhhhhccCCcchhHHHHHHHHHHHHHH------hhhhccCCccccCCCCCCCccccccccCC--------CCCC
Q 006021 230 KKTLLHELAHMVYSEHDANFYGLDKQLNQEAVA------LDWTKSRGHTLSGVRHTSHHEDDLFVGDS--------RSFS 295 (664)
Q Consensus 230 ~~tllHELaH~v~g~Hd~~F~~L~~~L~~E~~~------l~~~~~~g~~Lgg~~~~~~~~~~~~~~~~--------~~~g 295 (664)
++|++|||+|++.+||+.+|+.-++.|+..--. ..|+.+-+..|||+........ ...... +.+.
T Consensus 113 mgtylhel~h~lqgPhd~rfl~~L~~Lrad~gii~~mg~hrW~vg~l~el~g~~nt~v~~~-~tLg~stnqG~i~lrlrt 191 (278)
T KOG4842|consen 113 MGTYLHELTHNLQGPHDKRFLNKLDELRADQGIIEQMGLHRWFVGNLQELGGRANTRVNRY-PTLGISTNQGVIVLRLRT 191 (278)
T ss_pred chhhhhhhhhhhcCCChHHHHHHHHHHhhchhHHHHhcccceechhhhhcccccceeecCc-cceeeccccceEEEeccc
Confidence 999999999999999999999999988865422 2366677788887653211000 000001 1111
Q ss_pred ccccCCCC-------CCCccHHHHHHHHHHHHHhhhccccCCCC
Q 006021 296 QKLGGNIS-------DQLASARASSVAAAYRRLANASANSLGVS 332 (664)
Q Consensus 296 ~~LGG~~~-------~~~~~~Re~~a~AAerR~~~~~~~~~~~s 332 (664)
.|+-|.+. ......|++++++++++.+...+|..+..
T Consensus 192 drkkgfR~y~tissTl~heLtr~v~~ehde~fyrLdrql~kek~ 235 (278)
T KOG4842|consen 192 DRKKGFRHYETISSTLRHELTREVAAEHDERFYRLDRQLGKEKN 235 (278)
T ss_pred chhcccccCCCchHHHHhhhhhhHhhhhhhHHHHHHHHhCcccc
Confidence 22222211 12457999999999999999998885533
No 6
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=3.3e-13 Score=147.15 Aligned_cols=85 Identities=25% Similarity=0.344 Sum_probs=74.7
Q ss_pred eeEEEEEECCEEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 7 MLKVSAIWRGKKYVVE-VNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~-l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.++|.|+|+|++|.++ ++.++|+.+||++|..+|||+|+|||+|+ ||+.++++ ..+..++||||.+|||
T Consensus 3 ~~~v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~v---KGg~a~dd-------~~~~al~iKpn~~lmM 72 (473)
T KOG1872|consen 3 SDTVIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMV---KGGLAKDD-------VDWGALQIKPNETLMM 72 (473)
T ss_pred cceEeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEE---eccccccc-------ccccccccCCCCEEEe
Confidence 5789999999999987 99999999999999999999999999999 89977743 1245678999999999
Q ss_pred eccchhhhhHhhhhhh
Q 006021 86 MGVSEDEVDKVLQNEK 101 (664)
Q Consensus 86 mGs~~~eI~~v~~~~~ 101 (664)
|||+++.++.+..+..
T Consensus 73 mGt~e~~~e~p~~~~~ 88 (473)
T KOG1872|consen 73 MGTAEAGLEPPSLPPT 88 (473)
T ss_pred eccccccccCcccCCc
Confidence 9999998887766554
No 7
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.33 E-value=3.9e-12 Score=105.50 Aligned_cols=70 Identities=19% Similarity=0.333 Sum_probs=63.1
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006021 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
|+|+|+|+|+.+++++++++||.+||++|++.||||+++|||++ +|+.|. | ..+|+++++++|..|+|||
T Consensus 1 i~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~l~----d---~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIF---KGKERD----D---AETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEee---CCcccC----c---cCcHHHcCCCCCCEEEEec
Confidence 68999999999999999999999999999999999999999998 676443 1 2468899999999999998
No 8
>smart00580 PUG domain in protein kinases, N-glycanases and other nuclear proteins.
Probab=98.92 E-value=1.2e-09 Score=89.48 Aligned_cols=49 Identities=31% Similarity=0.632 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcCCcccc
Q 006021 575 TVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDV 629 (664)
Q Consensus 575 ~al~tL~Kil~NIi~~P~e~KyRrIR~sN~~F~~kV~~~~Ga~e~L~a~GF~e~~ 629 (664)
+|+++|++||+||++||+|+| +|++||++|++++||.++|.++||....
T Consensus 1 ~sv~dLLr~irNi~~hp~e~k------~n~~~~~~l~~~pg~~~~l~~~gFp~l~ 49 (58)
T smart00580 1 ESVRDLLRALRNILHHPREEK------GNPAIKERLGDVPGGFELYFTVGFPRLL 49 (58)
T ss_pred CcHHHHHHHHHHHhhCcchhh------cCHHHHHHhcCCCcHHHHHHHcCCCccc
Confidence 378999999999999999999 9999999999999999999999999875
No 9
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=98.89 E-value=5.1e-09 Score=89.33 Aligned_cols=70 Identities=20% Similarity=0.280 Sum_probs=60.5
Q ss_pred eeEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 7 MLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 7 ~i~ItVk~~-Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
++.|+|+=. |+++.+++++++||++||.+|++.+|+|+++|||++ +|+.|.+ ..+|.++|+++|..|.|
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~---~Gk~L~D-------~~tL~~ygi~~~stv~l 70 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKK---WYTIFKD-------HISLGDYEIHDGMNLEL 70 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEe---CCcCCCC-------CCCHHHcCCCCCCEEEE
Confidence 467888774 899999999999999999999999999999999998 6765552 24689999999999988
Q ss_pred e
Q 006021 86 M 86 (664)
Q Consensus 86 m 86 (664)
-
T Consensus 71 ~ 71 (73)
T cd01791 71 Y 71 (73)
T ss_pred E
Confidence 4
No 10
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=98.86 E-value=5.5e-09 Score=88.22 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=60.5
Q ss_pred EEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCC--CCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 10 VSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDV--KADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 10 ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgV--Ppe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
|.|+ +.|++++|+++++.||.+||++|++.+|+ |+++|||++ +|+.|.+ ..+|+++++++|..|+||
T Consensus 3 i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~---~G~~L~d-------~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 3 ITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIY---SGKILKD-------DTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred EEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEE---CCEEccC-------CCCHHHcCCCCCCEEEEE
Confidence 4444 77999999999999999999999999999 999999999 7876652 256889999999999999
Q ss_pred ccc
Q 006021 87 GVS 89 (664)
Q Consensus 87 Gs~ 89 (664)
.+.
T Consensus 73 ~~~ 75 (77)
T cd01805 73 VSK 75 (77)
T ss_pred Eec
Confidence 765
No 11
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=98.83 E-value=9.5e-09 Score=85.18 Aligned_cols=69 Identities=14% Similarity=0.278 Sum_probs=59.0
Q ss_pred eEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 8 LKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk~~-Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
|+|.|++- |++++++++++.||.+||.+|++.+|+|++.|||++ +|+.|.+ ..+|+++++++|..|+|+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~L~d-------~~~L~~~~i~~~~~l~l~ 70 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIY---SGRVLKD-------DETLSEYKVEDGHTIHLV 70 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCEECCC-------cCcHHHCCCCCCCEEEEE
Confidence 45777765 788999999999999999999999999999999999 6765542 246889999999999886
No 12
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=98.81 E-value=8.9e-09 Score=87.03 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=60.6
Q ss_pred EEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006021 9 KVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 9 ~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
.|.|+ +.|+++++++.+++||.+||++|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|..|.|+-
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~---~G~~L~d-------~~~L~~~~i~~~~~l~l~~ 71 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLF---KGKALAD-------DKRLSDYSIGPNAKLNLVV 71 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEECCC-------CCCHHHCCCCCCCEEEEEE
Confidence 35555 57899999999999999999999999999999999999 7775542 2568999999999999986
Q ss_pred cc
Q 006021 88 VS 89 (664)
Q Consensus 88 s~ 89 (664)
.+
T Consensus 72 ~~ 73 (74)
T cd01807 72 RP 73 (74)
T ss_pred cC
Confidence 53
No 13
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=98.81 E-value=6.8e-09 Score=88.45 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=58.0
Q ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEecc
Q 006021 13 IWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGV 88 (664)
Q Consensus 13 k~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmGs 88 (664)
+..|++++|++++++||.+||.+|+..||||+++|||++ +|..|.+ ..+|+++++.+|..|.||..
T Consensus 4 ~l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d-------~~tL~~~~i~~g~~l~v~~~ 69 (76)
T cd01800 4 KLNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQY---EGIFIKD-------SNSLAYYNLANGTIIHLQLK 69 (76)
T ss_pred ccCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCEEcCC-------CCcHHHcCCCCCCEEEEEEe
Confidence 348999999999999999999999999999999999999 7765542 25688999999999999865
No 14
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=98.79 E-value=1.3e-08 Score=84.19 Aligned_cols=66 Identities=21% Similarity=0.428 Sum_probs=58.5
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEeccc
Q 006021 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGVS 89 (664)
Q Consensus 14 ~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmGs~ 89 (664)
..|++|+|+++++.||.+||..|++.+++|++.|+|++ +|..|.+ ..+|.++++++|..|+|+..+
T Consensus 3 ~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~---~G~~L~d-------~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 3 LSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIY---NGKELDD-------DKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp TTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEE---TTEEEST-------TSBTGGGTTSTTEEEEEEESS
T ss_pred CCCcEEEEEECCCCCHHHhhhhcccccccccccceeee---eeecccC-------cCcHHHcCCCCCCEEEEEEec
Confidence 36889999999999999999999999999999999999 7876642 357899999999999998753
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=98.76 E-value=2.5e-08 Score=85.62 Aligned_cols=71 Identities=13% Similarity=0.324 Sum_probs=60.4
Q ss_pred eEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 8 LKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk~~-Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
++|+|+-. |++++|++++++||++||.+|++.+++|+++|||++ +|+.|.+ . +|.++|+++|.+|.||
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~---~Gk~L~d-------~-~L~~~gi~~~~~i~l~ 70 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLH---RETRLSS-------G-KLQDLGLGDGSKLTLV 70 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEE---CCcCCCC-------C-cHHHcCCCCCCEEEEE
Confidence 45777764 889999999999999999999999999999999998 6765541 2 5889999999999998
Q ss_pred ccc
Q 006021 87 GVS 89 (664)
Q Consensus 87 Gs~ 89 (664)
=+-
T Consensus 71 ~~~ 73 (78)
T cd01804 71 PTV 73 (78)
T ss_pred eec
Confidence 553
No 16
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.66 E-value=5.2e-08 Score=78.23 Aligned_cols=64 Identities=22% Similarity=0.370 Sum_probs=54.6
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCc
Q 006021 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
+.|.|+|.++++.|+++++.||++||..|++.+|+|+++|||++ +|+.|.+ ..+|+++++++|.
T Consensus 1 ~~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~---~g~~L~d-------~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIY---KGKVLED-------DRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCEECCC-------CCCHHHcCCcCCC
Confidence 46899999988999999999999999999999999999999999 6764442 2468888988773
No 17
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.61 E-value=1.1e-07 Score=81.92 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=60.8
Q ss_pred eEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceE--eeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006021 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRF--IVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 8 i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKL--L~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
++|+|+- +|+++.+++++++||.+||.+|++.+|+|+++||| ++ +|+.|.+. .+|+++|+++|..|-
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~---~G~~L~D~-------~tL~~~gi~~gs~l~ 72 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLD---SREVLQDG-------VPLVSQGLGPGSTVL 72 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEecc---CCCCCCCC-------CCHHHcCCCCCCEEE
Confidence 5666665 68999999999999999999999999999999999 66 67766531 468899999999999
Q ss_pred Eeccc
Q 006021 85 MMGVS 89 (664)
Q Consensus 85 LmGs~ 89 (664)
|+-..
T Consensus 73 l~~~~ 77 (80)
T cd01792 73 LVVQN 77 (80)
T ss_pred EEEEc
Confidence 88653
No 18
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=98.58 E-value=1e-07 Score=80.42 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=56.7
Q ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 9 KVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 9 ~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
+|+..-+|+++.|+++++.||++||..|++.+|||++.|+|++ .|+.|.+ + ..+|+++|+++|..|.|
T Consensus 2 ~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~---~Gk~L~D----~--~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 2 TVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIY---NGRELVD----N--KRLLALYGVKDGDLVVL 69 (71)
T ss_pred EEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEE---CCeEccC----C--cccHHHcCCCCCCEEEE
Confidence 4555557889999999999999999999999999999999999 6765542 1 24578899999988876
No 19
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.55 E-value=2.1e-07 Score=75.68 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=56.5
Q ss_pred EEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006021 12 AIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 12 Vk~~-Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
|+|. |+++.+.+++++||.+||.+|++.+|+|+++|||++ +|+.+.+ ..+|.++++++|..|++++
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~---~g~~l~d-------~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIY---AGKILKD-------DKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCcCCCC-------cCCHHHCCCCCCCEEEEEE
Confidence 5555 999999999999999999999999999999999998 6754431 2457889999999999986
No 20
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=98.54 E-value=1.7e-07 Score=79.32 Aligned_cols=68 Identities=12% Similarity=0.212 Sum_probs=57.7
Q ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006021 9 KVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 9 ~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
.|.|+- +++++++++++.||++||.+|++.+|||++.|+|++ .|+.|.+ ..+|++++++++..|-|+.
T Consensus 2 qi~vk~-~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~---~Gk~L~D-------~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 2 QLFVRA-QNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLL---AGVPLED-------DATLGQCGVEELCTLEVAG 69 (74)
T ss_pred EEEEEC-CCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEE---CCeECCC-------CCCHHHcCCCCCCEEEEEE
Confidence 466665 578999999999999999999999999999999999 6765542 2568899999999998764
No 21
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=98.53 E-value=2.1e-07 Score=77.87 Aligned_cols=69 Identities=17% Similarity=0.325 Sum_probs=58.5
Q ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006021 9 KVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 9 ~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
.|.|+- +|+++.|+++++.||++||++|++.+|+|+++|+|++ .|..|.+ ..+|+++++.+|..|.++-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~---~g~~L~d-------~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEE---CCEECCC-------CCcHHHcCCCCCCEEEEEE
Confidence 466664 5899999999999999999999999999999999998 6765442 2468899999999998864
No 22
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.51 E-value=1.4e-07 Score=79.77 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=57.2
Q ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006021 13 IWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 13 k~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
.+.|++++|++.+++||.+||++|++.+|+|++.|+|++ +|+.|.+. .+|+++++++|..|.|+-
T Consensus 5 ~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~---~G~~L~D~-------~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 5 NDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSF---EGRPMEDE-------HPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCEECCCC-------CCHHHcCCCCCCEEEEEE
Confidence 467899999999999999999999999999999999998 78766632 467889999999998863
No 23
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=98.50 E-value=3.8e-07 Score=76.36 Aligned_cols=70 Identities=9% Similarity=0.244 Sum_probs=58.5
Q ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006021 9 KVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 9 ~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
.|+|+- +|+++.++++++.||.+||++|++.+|+|+++|+|++ .|..|.+ ..+|+++++.+|..|.|+-
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~---~g~~L~d-------~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMND-------DKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEE---CCeEccC-------CCCHHHcCCCCCCEEEEEE
Confidence 355544 6899999999999999999999999999999999998 5664432 2568899999999999875
Q ss_pred c
Q 006021 88 V 88 (664)
Q Consensus 88 s 88 (664)
.
T Consensus 72 ~ 72 (76)
T cd01806 72 A 72 (76)
T ss_pred E
Confidence 3
No 24
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=98.49 E-value=2e-07 Score=78.85 Aligned_cols=62 Identities=24% Similarity=0.339 Sum_probs=54.6
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 15 RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 15 ~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+|+++++++++++||.+||++|++..|||++.|||+| .|..|.+ ..+|.++++++|..|-||
T Consensus 7 ~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~---~G~~L~D-------~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 7 TGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFF---SGKLLTD-------KTRLQETKIQKDYVVQVI 68 (70)
T ss_pred CCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEE---CCeECCC-------CCCHHHcCCCCCCEEEEE
Confidence 5889999999999999999999999999999999999 6765553 245788999999999886
No 25
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=98.43 E-value=4.4e-07 Score=78.23 Aligned_cols=71 Identities=15% Similarity=0.276 Sum_probs=56.8
Q ss_pred eEEEEEECCEEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 8 LKVSAIWRGKKYVVE-VNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~-l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
|.|....+.+.++++ +.++.||.+||.+|++.+|||++.|||++ +|+.|++ ..+|+++++++|..|-||
T Consensus 3 I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~---~Gk~L~D-------~~tL~~y~i~~~~~i~l~ 72 (78)
T cd01797 3 IQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFY---RGKQMED-------GHTLFDYNVGLNDIIQLL 72 (78)
T ss_pred EEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEe---CCEECCC-------CCCHHHcCCCCCCEEEEE
Confidence 344443333347885 88999999999999999999999999999 7876653 256889999999999997
Q ss_pred cc
Q 006021 87 GV 88 (664)
Q Consensus 87 Gs 88 (664)
-.
T Consensus 73 ~~ 74 (78)
T cd01797 73 VR 74 (78)
T ss_pred Ee
Confidence 54
No 26
>PTZ00044 ubiquitin; Provisional
Probab=98.42 E-value=5.9e-07 Score=75.78 Aligned_cols=63 Identities=21% Similarity=0.444 Sum_probs=55.0
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 14 ~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
.+|+++++.+.++.||.+||++|++.+|+|++.|||++ .|..|.+ ..+|+++++.+|..|.|+
T Consensus 8 ~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~---~g~~L~d-------~~~l~~~~i~~~~~i~l~ 70 (76)
T PTZ00044 8 LTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIY---SGKQMSD-------DLKLSDYKVVPGSTIHMV 70 (76)
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEEccC-------CCcHHHcCCCCCCEEEEE
Confidence 48899999999999999999999999999999999998 6765432 245788999999999886
No 27
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.41 E-value=4.1e-07 Score=99.48 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=64.1
Q ss_pred EEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhC---CCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006021 9 KVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTD---VKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 9 ~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTg---VPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
+|+|| +.|++|.|+|+++.||.+||.+|++.+| ||++.||||| +|+.|++. .+|.+++|+.|..|+
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy---~GkiL~Dd-------~tL~dy~I~e~~~Iv 71 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIY---SGKILSDD-------KTVREYKIKEKDFVV 71 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEE---CCEECCCC-------CcHHHcCCCCCCEEE
Confidence 46666 7899999999999999999999999999 9999999999 78877632 468899999999999
Q ss_pred Eeccchhh
Q 006021 85 MMGVSEDE 92 (664)
Q Consensus 85 LmGs~~~e 92 (664)
+|.+....
T Consensus 72 vmv~k~k~ 79 (378)
T TIGR00601 72 VMVSKPKT 79 (378)
T ss_pred EEeccCCC
Confidence 99776433
No 28
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=98.40 E-value=5.9e-07 Score=75.07 Aligned_cols=65 Identities=23% Similarity=0.378 Sum_probs=56.5
Q ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006021 13 IWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 13 k~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
.+.|+++++.+++++||++||..|++.+|+|++.|+|++ +|+.|.+ ..+|+++++++|..|.|+.
T Consensus 5 ~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~---~G~~L~d-------~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 5 TNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIF---AGKELRN-------TTTIQECDLGQQSILHAVR 69 (70)
T ss_pred cCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEE---CCeECCC-------CCcHHHcCCCCCCEEEEEe
Confidence 457889999999999999999999999999999999999 7765542 2568889999999998863
No 29
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=98.40 E-value=5.9e-07 Score=75.36 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=55.4
Q ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 9 KVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 9 ~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+|+|+-....++|++++++||++||++|++.+|+++++|+|++ +|+.|.+ ..+|+++++++|..|-|+
T Consensus 2 ~i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~---~Gk~L~d-------~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 2 KVTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIF---AGKILKD-------TDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred EEEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEE---CCeEcCC-------CCcHHHcCCCCCCEEEEE
Confidence 4555544334689999999999999999999999999999999 6776652 246889999999998775
No 30
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=98.36 E-value=1.1e-06 Score=79.78 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=60.3
Q ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 7 ~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.+.|.|+- +|+++.|++.+++||.+||++|++..|+|++.|||++ .|+.|.+ ..+|+++++++|..|.|
T Consensus 27 ~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~dy~I~~~stL~l 96 (103)
T cd01802 27 TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIW---NNMELED-------EYCLNDYNISEGCTLKL 96 (103)
T ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEE---CCEECCC-------CCcHHHcCCCCCCEEEE
Confidence 46666665 6889999999999999999999999999999999999 6765553 24688999999999988
Q ss_pred ec
Q 006021 86 MG 87 (664)
Q Consensus 86 mG 87 (664)
+-
T Consensus 97 ~~ 98 (103)
T cd01802 97 VL 98 (103)
T ss_pred EE
Confidence 63
No 31
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.35 E-value=1.3e-06 Score=76.17 Aligned_cols=80 Identities=19% Similarity=0.303 Sum_probs=60.4
Q ss_pred eeEEEEEECCE---EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006021 7 MLKVSAIWRGK---KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 7 ~i~ItVk~~Gk---~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
+|+|.|++... ..+..++.+.||++||..|+.+|||||+.|+|.+...+++.......|+ ..+|..+|+++|..|
T Consensus 1 ~v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd--~~~L~~y~~~dg~~i 78 (87)
T PF14560_consen 1 VVKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDD--DATLGSYGIKDGMRI 78 (87)
T ss_dssp EEEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGS--SSBCCHHT-STTEEE
T ss_pred CEEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCC--ccEeecCCCCCCCEE
Confidence 47899999998 8889999999999999999999999999999987422232111122222 467899999999999
Q ss_pred EEecc
Q 006021 84 RMMGV 88 (664)
Q Consensus 84 mLmGs 88 (664)
.++=+
T Consensus 79 ~V~D~ 83 (87)
T PF14560_consen 79 HVVDT 83 (87)
T ss_dssp EEEE-
T ss_pred EEEeC
Confidence 88654
No 32
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=98.31 E-value=1.5e-06 Score=75.71 Aligned_cols=69 Identities=19% Similarity=0.117 Sum_probs=54.6
Q ss_pred eEEEEEE-CCEEEEEEe--CCCCCHHHHHHHHHHHhC-C-CCCCceEeeccCCCCCCCCCCCcccccccccccc--cCCC
Q 006021 8 LKVSAIW-RGKKYVVEV--NSGSPLKELGHELQKLTD-V-KADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVS--IIEG 80 (664)
Q Consensus 8 i~ItVk~-~Gk~~~i~l--~~d~TV~dLK~~Ie~lTg-V-Ppe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~g--lk~G 80 (664)
|+|+|+- ++++++|++ +++.||.+||+.|++..+ . ++++||||| +|+.|++. .+|++++ +..|
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy---~GKiLkD~-------~tL~~~~~~~~~~ 71 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIY---SGKLLPDH-------LKLRDVLRKQDEY 71 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEE---cCeeccch-------hhHHHHhhcccCC
Confidence 7888888 778866655 899999999999999885 4 579999999 89887742 4566664 7777
Q ss_pred ceEEEe
Q 006021 81 KSIRMM 86 (664)
Q Consensus 81 ~KImLm 86 (664)
..|=|+
T Consensus 72 ~tiHLV 77 (79)
T cd01790 72 HMVHLV 77 (79)
T ss_pred ceEEEE
Confidence 777665
No 33
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.19 E-value=2.8e-06 Score=76.69 Aligned_cols=62 Identities=19% Similarity=0.238 Sum_probs=53.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEecc
Q 006021 18 KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGV 88 (664)
Q Consensus 18 ~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmGs 88 (664)
..++++++++||.+||.+|.+.++|+|..|||++ .|..|- |+ .-||+++|+.+|+.|+|+-.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~---dG~~L~----DD--srTLssyGv~sgSvl~Llid 77 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSI---DGKILS----DD--CATLGTLGVIPESVILLKAD 77 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeee---cCceec----cC--CccHHhcCCCCCCEEEEEec
Confidence 4568899999999999999999999999999999 565333 33 35789999999999999974
No 34
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.13 E-value=4.6e-06 Score=71.58 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=50.8
Q ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccC-CCceEEE
Q 006021 12 AIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSII-EGKSIRM 85 (664)
Q Consensus 12 Vk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk-~G~KImL 85 (664)
++| |.+++|+++++.||++||++|++.+||||+.|+| + .|+.+.++ ..+|++++++ +|..+.|
T Consensus 9 ~~~-~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~---~G~~L~dD------~~tL~~ygi~~~g~~~~l 72 (75)
T cd01799 9 QSH-TVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-V---IGQRLARD------QETLYSHGIRTNGDSAFL 72 (75)
T ss_pred ccC-CCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-E---cCCeeCCC------cCCHHHcCCCCCCCEEEE
Confidence 344 4567899999999999999999999999999999 7 57544321 2568899998 7888876
No 35
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.07 E-value=4.8e-06 Score=92.51 Aligned_cols=73 Identities=22% Similarity=0.306 Sum_probs=67.2
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
.|.|+||..+.+|+|.++.++||.+||+.|...++++++.|+||| .|++||++ .||...||.+|.+|=|+
T Consensus 15 ~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIf---aGrILKD~-------dTL~~~gI~Dg~TvHLV 84 (493)
T KOG0010|consen 15 LIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIY---AGRILKDD-------DTLKQYGIQDGHTVHLV 84 (493)
T ss_pred eeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeee---cCccccCh-------hhHHHcCCCCCcEEEEE
Confidence 599999999999999999999999999999999999999999999 89999954 46788999999999987
Q ss_pred ccc
Q 006021 87 GVS 89 (664)
Q Consensus 87 Gs~ 89 (664)
-..
T Consensus 85 ik~ 87 (493)
T KOG0010|consen 85 IKS 87 (493)
T ss_pred ecc
Confidence 654
No 36
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=98.03 E-value=6.1e-06 Score=81.53 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=49.2
Q ss_pred CcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHhh
Q 006021 198 KCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALD 264 (664)
Q Consensus 198 ~~lLGlN~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~g~Hd~~F~~L~~~L~~E~~~l~ 264 (664)
...||-. +.--.|.|=+| ..+.|.+.|-++++|||||..|.+|++.||+++.++-.++.+..
T Consensus 138 ksrWGsc-~~~~~I~ln~~----L~~~P~~~idYVvvHEL~Hl~~~nHs~~Fw~~v~~~~Pd~k~~~ 199 (205)
T PF01863_consen 138 KSRWGSC-SSKGNITLNWR----LVMAPPEVIDYVVVHELCHLRHPNHSKRFWALVEKYMPDYKERR 199 (205)
T ss_pred hhccccC-CCCCcEEeecc----cccCCccHHHHHHHHHHHHhccCCCCHHHHHHHHHHCcCHHHHH
Confidence 4468876 43334555443 55789999999999999999999999999999999988777654
No 37
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=97.98 E-value=3.9e-05 Score=67.08 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=55.6
Q ss_pred eEEEEEEC--CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 8 LKVSAIWR--GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 8 i~ItVk~~--Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
++|.|++. ....+..++++.||.+||++|+..||+||+.|+|.+-..+|.... ...+ +..+|..+++.+|..|-+
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~-~l~~--d~~~L~~y~~~dg~~IhV 78 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVS-KLDD--DDALLGSYPVDDGCRIHV 78 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEe-ecCC--CccEeeeccCCCCCEEEE
Confidence 45666665 445556799999999999999999999999999964221232211 1112 235688999999999987
Q ss_pred ecc
Q 006021 86 MGV 88 (664)
Q Consensus 86 mGs 88 (664)
+=+
T Consensus 79 vD~ 81 (84)
T cd01789 79 IDV 81 (84)
T ss_pred EeC
Confidence 654
No 38
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=97.87 E-value=1.8e-05 Score=68.31 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHhC--CC-CCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 24 NSGSPLKELGHELQKLTD--VK-ADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 24 ~~d~TV~dLK~~Ie~lTg--VP-pe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+.++||.+||+.|++.++ ++ ++.|||+| +|+.|++ ..+|++++|++|..|.|+
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy---~GKiL~D-------~~TL~dygI~~gstlhLv 73 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIH---CGRKLKD-------DQTLDFYGIQSGSTIHIL 73 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEe---CCcCCCC-------CCcHHHcCCCCCCEEEEE
Confidence 457899999999999984 75 99999999 7887663 257899999999999987
No 39
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=97.64 E-value=7.2e-05 Score=79.83 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=64.5
Q ss_pred EEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhC--CCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 9 KVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTD--VKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 9 ~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTg--VPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
+|+|| ..|++++|++.++.||.++|..|+...| .|.+.||||+ .|+.|+++ .++.+++++.++-|.+
T Consensus 2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy---~GkiL~D~-------~tv~Eykv~E~~fiVv 71 (340)
T KOG0011|consen 2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIY---SGKILKDE-------TTVGEYKVKEKKFIVV 71 (340)
T ss_pred eeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeee---cceeccCC-------cchhhhccccCceEEE
Confidence 45665 5778889999999999999999999999 8999999999 79888753 6789999999999999
Q ss_pred eccchh
Q 006021 86 MGVSED 91 (664)
Q Consensus 86 mGs~~~ 91 (664)
|.+...
T Consensus 72 MlsK~k 77 (340)
T KOG0011|consen 72 MLSKDK 77 (340)
T ss_pred EEecCc
Confidence 998875
No 40
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=97.42 E-value=0.00012 Score=75.01 Aligned_cols=62 Identities=27% Similarity=0.336 Sum_probs=48.5
Q ss_pred CcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHhh
Q 006021 198 KCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALD 264 (664)
Q Consensus 198 ~~lLGlN~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~g~Hd~~F~~L~~~L~~E~~~l~ 264 (664)
++.||=..-.| .|.+-+|-- -.|.+.|.++.+|||||..+++|+.+||+++..+-.++.++.
T Consensus 149 k~~WGScs~~~-~i~~~~~l~----~~p~~~i~YVvvHELaHLke~nHs~~Fw~lv~~~~P~~~~~~ 210 (223)
T COG1451 149 KRRWGSCSKAG-EIRFNWRLV----MAPEEVIDYVVVHELAHLKEKNHSKRFWRLVEKYMPDYRAAK 210 (223)
T ss_pred cceeeeecCCC-cEEeehhhh----cCCHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHCCChHHHH
Confidence 44666554455 555554543 368899999999999999999999999999999988877655
No 41
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=97.41 E-value=0.00068 Score=59.50 Aligned_cols=71 Identities=15% Similarity=0.400 Sum_probs=60.0
Q ss_pred CeeEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006021 6 SMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~~-Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..|.|.|+.- |+++.|.+.+++|+..|+.++++..|||+++|+|+| .|..|.+ ..|+.++++..|..|-
T Consensus 10 ~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f---~G~~L~~-------~~T~~~l~m~d~d~I~ 79 (87)
T cd01763 10 EHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLF---DGQRIRD-------NQTPDDLGMEDGDEIE 79 (87)
T ss_pred CeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEE---CCeECCC-------CCCHHHcCCCCCCEEE
Confidence 4677777766 888899999999999999999999999999999999 7765542 2467788999999887
Q ss_pred Ee
Q 006021 85 MM 86 (664)
Q Consensus 85 Lm 86 (664)
++
T Consensus 80 v~ 81 (87)
T cd01763 80 VM 81 (87)
T ss_pred EE
Confidence 65
No 42
>PLN02560 enoyl-CoA reductase
Probab=97.01 E-value=0.0017 Score=69.65 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=53.9
Q ss_pred EEEEE-CCEEE---EEEeCCCCCHHHHHHHHHHHhCC-CCCCceEeecc----CCCCCCCCCCCcccccccccccccCCC
Q 006021 10 VSAIW-RGKKY---VVEVNSGSPLKELGHELQKLTDV-KADTMRFIVPQ----NKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (664)
Q Consensus 10 ItVk~-~Gk~~---~i~l~~d~TV~dLK~~Ie~lTgV-Ppe~QKLL~pk----~KG~~Lk~p~sD~~~~ltL~~~glk~G 80 (664)
|+|+- +|+.+ +|++++++||+|||.+|++..++ ++++|+|.+.. .+|..+++ ..+|++.|+++|
T Consensus 3 I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d-------~ktL~d~gv~~g 75 (308)
T PLN02560 3 VTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDD-------SKSLKDYGLGDG 75 (308)
T ss_pred EEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCC-------CCCHHhcCCCCC
Confidence 45553 46776 79999999999999999999997 89999999742 12323331 246788999999
Q ss_pred ceEEE--ecc
Q 006021 81 KSIRM--MGV 88 (664)
Q Consensus 81 ~KImL--mGs 88 (664)
..|.+ +|.
T Consensus 76 stLy~kDLGp 85 (308)
T PLN02560 76 GTVVFKDLGP 85 (308)
T ss_pred ceEEEEeCCC
Confidence 98877 554
No 43
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=96.83 E-value=0.0043 Score=51.77 Aligned_cols=69 Identities=17% Similarity=0.383 Sum_probs=56.1
Q ss_pred eEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCC-CCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 8 LKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKA-DTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 8 i~ItVk~~-Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPp-e~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
|+|+|+.. |+.+.+.+.++.|+..|...+++..|+|+ +..+|+| .|..|. + ..|+.++++..|-.|-+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~f---dG~~L~-~------~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIF---DGKRLD-P------NDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEE---TTEEE--T------TSCHHHHT-STTEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEE---CCEEcC-C------CCCHHHCCCCCCCEEEE
Confidence 56777776 66788999999999999999999999999 9999999 787554 2 25678899999887765
Q ss_pred e
Q 006021 86 M 86 (664)
Q Consensus 86 m 86 (664)
+
T Consensus 71 ~ 71 (72)
T PF11976_consen 71 I 71 (72)
T ss_dssp E
T ss_pred E
Confidence 4
No 44
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=96.71 E-value=0.0034 Score=53.76 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=50.3
Q ss_pred EEEEEECC-EEEE-EEe-CCCCCHHHHHHHHHHHhCC-CCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006021 9 KVSAIWRG-KKYV-VEV-NSGSPLKELGHELQKLTDV-KADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 9 ~ItVk~~G-k~~~-i~l-~~d~TV~dLK~~Ie~lTgV-Ppe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
.|.++-++ +.+. +++ ++++||.+||.+|++..+. ++++|+|... .+|+.|++. .+|++.|++.|..|.
T Consensus 2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~-~~g~~L~d~-------~tL~~~gv~~g~~ly 73 (77)
T cd01801 2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLE-PKGKSLKDD-------DTLVDLGVGAGATLY 73 (77)
T ss_pred eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeC-CCCcccCCc-------ccHhhcCCCCCCEEE
Confidence 45566666 5543 333 6889999999999999865 8999999743 278766532 357889999998765
Q ss_pred E
Q 006021 85 M 85 (664)
Q Consensus 85 L 85 (664)
+
T Consensus 74 v 74 (77)
T cd01801 74 V 74 (77)
T ss_pred E
Confidence 3
No 45
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=96.69 E-value=0.0053 Score=45.99 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=49.3
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006021 15 RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 15 ~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
+|+...+.++++.|+.+|+..|.+.+|++++.|+|++ .|..+... ..+...++..|..|.++.
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~---~~~~~~~~-------~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLV---NGKILPDS-------LTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEE---CCeECCCC-------CcHHHcCCCCCCEEEEEe
Confidence 4778889999999999999999999999999999998 55433321 112346778888888763
No 46
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0022 Score=53.32 Aligned_cols=62 Identities=10% Similarity=0.322 Sum_probs=48.7
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 14 ~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
..|+.++|++.+.++|.-.|+.+++.-|+||..|+|+| .|+.+.++ ++...+.+.-|+-+-|
T Consensus 8 Lt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~---~gkqm~DD-------~tA~~Y~~~~GSVlHl 69 (70)
T KOG0005|consen 8 LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---AGKQMNDD-------KTAAHYNLLGGSVLHL 69 (70)
T ss_pred eccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhh---cccccccc-------ccHHHhhhccceeEee
Confidence 46889999999999999999999999999999999999 57654432 4444556655655543
No 47
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=96.43 E-value=0.0022 Score=61.41 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHHhhhhccC------CcchhHHHHHHHHH
Q 006021 224 RKYESIKKTLLHELAHMVYS------EHDANFYGLDKQLN 257 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g------~Hd~~F~~L~~~L~ 257 (664)
.|.+.|..|++|||||.... +|++.||+++.++.
T Consensus 54 ~~~~~l~~~l~HEm~H~~~~~~g~~~~Hg~~f~~~~~~~~ 93 (146)
T smart00731 54 NGRDRLRETLLHELCHAALYLFGRGYGHGDEWKRWMRQVN 93 (146)
T ss_pred ccHHHHHhhHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHc
Confidence 46789999999999999987 99999999987764
No 48
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=96.23 E-value=0.0022 Score=58.82 Aligned_cols=67 Identities=18% Similarity=0.338 Sum_probs=55.1
Q ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 9 KVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 9 ~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
-|.+.+-|++.++++.++.||..+|+.|+..-|+||+.|.|++ .|+.|-+ .-|++.+++..-.+|.+
T Consensus 3 ~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~---~~k~LED-------~~Tla~Y~i~~~~Tl~~ 69 (128)
T KOG0003|consen 3 IFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLADYNIQKESTLHL 69 (128)
T ss_pred EEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHh---ccccccc-------CCcccccCccchhhhhh
Confidence 4788999999999999999999999999999999999999998 6765543 24567777765555543
No 49
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=96.17 E-value=0.017 Score=50.44 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=41.8
Q ss_pred CCCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006021 4 LGSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 4 ~~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
|...+-|.|.-.--.+-|++++++|+.+|+++|++.+++|...|.|..-+.....+. ++ ...+|+++||+-|.=|
T Consensus 1 ~~~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~---s~--~~~tl~~lglkHGdml 75 (80)
T PF11543_consen 1 MASSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELK---SS--DSKTLSSLGLKHGDML 75 (80)
T ss_dssp -----EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSS---S---TT-CCCCT---TT-EE
T ss_pred CCccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccc---cC--CcCCHHHcCCCCccEE
Confidence 345677888888888999999999999999999999999999998864322222221 11 1357889999988654
No 50
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=96.02 E-value=0.015 Score=54.18 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=48.6
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCccccccccccccc
Q 006021 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSI 77 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~gl 77 (664)
+-|-|++++.+|=++..++.||.+||..|+.++.+||+.|+|+ |...+.++ ..||++.|+
T Consensus 3 vFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~----kd~qvLeD------~kTL~d~g~ 62 (119)
T cd01788 3 VFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY----KDDQLLDD------GKTLGDCGF 62 (119)
T ss_pred eEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee----cCceeecc------cccHHHcCc
Confidence 4577888888888899999999999999999999999999999 34334422 357877776
No 51
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=95.78 E-value=0.0086 Score=55.61 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=37.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHh-----CCC--CCCceEeeccCCCCCCCCCCCcccccccccccc
Q 006021 20 VVEVNSGSPLKELGHELQKLT-----DVK--ADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVS 76 (664)
Q Consensus 20 ~i~l~~d~TV~dLK~~Ie~lT-----gVP--pe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~g 76 (664)
.+.+.+++||.+||+.|++.. ++| ++.||||| .|+.|.+. .||++++
T Consensus 19 p~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy---sGKiLeD~-------~TL~d~~ 72 (113)
T cd01814 19 PKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS---AGKILENS-------KTVGECR 72 (113)
T ss_pred ccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe---CCeecCCC-------CcHHHhC
Confidence 467889999999999999555 455 99999999 78877642 4566665
No 52
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=95.09 E-value=0.02 Score=54.54 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=40.3
Q ss_pred cccccc-cCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhcc--------CCcchhHHHHHHHHHH
Q 006021 199 CVLGFN-KNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVY--------SEHDANFYGLDKQLNQ 258 (664)
Q Consensus 199 ~lLGlN-~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~--------g~Hd~~F~~L~~~L~~ 258 (664)
..+|.- .+.+....|+|-.. .....+.+.++.||+|||||... .+|+..|.++..+|..
T Consensus 30 ~~~G~~~~~~~~~~~I~ls~~-~~~~~~~~~~~~tL~HEm~H~~~~~~~~~~~~~Hg~~fk~~~~~ig~ 97 (157)
T PF10263_consen 30 RTAGRCRYKRRSPCEIRLSPK-LLDRNPEEELIDTLLHEMAHAAAYVFGGGRRRGHGKEFKQWARRIGA 97 (157)
T ss_pred CceEEEEECCCCceEEEECHH-HHHhhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHHHHCC
Confidence 456642 33332455555332 01126789999999999999876 6999999999887764
No 53
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=95.07 E-value=0.023 Score=55.41 Aligned_cols=61 Identities=20% Similarity=0.413 Sum_probs=51.3
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 16 Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
|++..+++.++.||..+|..|++..|||++.|.|++ -|..|-+ ..+|++++|..-+.|-|+
T Consensus 10 ~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlif---ag~qLed-------grtlSDY~Iqkestl~l~ 70 (156)
T KOG0004|consen 10 GKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLV 70 (156)
T ss_pred ccceeeeecccccHHHHHHhhhcccCCCchhhhhhh---hhccccc-------CCccccccccccceEEEE
Confidence 457788999999999999999999999999999999 5665543 267899999888877765
No 54
>KOG2699 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.045 Score=60.62 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcCCcccccccccCCcceEEEEcCC
Q 006021 576 VLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKAETYLVLKRN 646 (664)
Q Consensus 576 al~tL~Kil~NIi~~P~e~KyRrIR~sN~~F~~kV~~~~Ga~e~L~a~GF~e~~~~d~~~~~e~~LVl~~~ 646 (664)
+..++.+|..|++++|+...|+.|+..|..|...++.+.+|++++..+||.... +.++++++..
T Consensus 310 ~~~~~~~~~~~~ak~pd~~l~q~~f~~~~~~~~~~g~~~~a~~~~~l~~el~~~-------~~e~~~~p~~ 373 (407)
T KOG2699|consen 310 AFLTLYTPFKNVAKDPDGELLQGIFLPNELLLARYGFVSEALEFMELPGELLQE-------GSEFLSLPSV 373 (407)
T ss_pred HHHHhhcccchhccCcchhhhhhhhchhHHHHHHHhccccchhhhhhhhHHhhc-------cccccccccc
Confidence 889999999999999999999999999999999999999999999999999885 3678888775
No 55
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=93.87 E-value=0.12 Score=44.44 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=46.2
Q ss_pred eeEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCce----EeeccCCCCCCCCCCCcccccccccccccCCCc
Q 006021 7 MLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMR----FIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 7 ~i~ItVk~~-Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QK----LL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
.+.|+|.++ |+.+++.+|.+.||++|-..|-+.++.+..... +-.-+.+|..|. ...+|+++|+.+|.
T Consensus 2 ~~rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~-------~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 2 LCRVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLD-------PDQTLADAGVRDGD 74 (79)
T ss_dssp EEEEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEE-------TTSBCGGGT--TT-
T ss_pred EEEEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccC-------CcCcHhHcCCCCCC
Confidence 478999997 499999999999999999999999997554432 222224564332 23679999999999
Q ss_pred eEEE
Q 006021 82 SIRM 85 (664)
Q Consensus 82 KImL 85 (664)
.++|
T Consensus 75 ~L~L 78 (79)
T PF08817_consen 75 VLVL 78 (79)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8886
No 56
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=93.40 E-value=0.37 Score=38.24 Aligned_cols=65 Identities=20% Similarity=0.367 Sum_probs=53.7
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEecc
Q 006021 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGV 88 (664)
Q Consensus 14 ~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmGs 88 (664)
..|+.+.+.+.+..++..+|.+|+...|+|++.|.+.+ .|+.|.+ ..++..++|..+..+-|...
T Consensus 7 ~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~---~~~~l~d-------~~~l~~~~i~~~~~~~l~~~ 71 (75)
T KOG0001|consen 7 LDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIF---GGKPLED-------GRTLADYNIQEGSTLHLVLS 71 (75)
T ss_pred cCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEE---CCEECcC-------CCcHHHhCCCCCCEEEEEEe
Confidence 78999999999999999999999999999999999887 4543432 25577788888888777654
No 57
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.21 Score=51.10 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=61.6
Q ss_pred eeEEEEEECCEEE--EEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCC-CCCCCCCCcccccccccccccCCCceE
Q 006021 7 MLKVSAIWRGKKY--VVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKG-SKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 7 ~i~ItVk~~Gk~~--~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG-~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
++.|.|++.-..+ +..++.+.||.+||.+|+-+||++++.++|-+- +| .+.....++++ ..|..++...|.+|
T Consensus 1 ~v~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~--~~~d~~~~~lsn~d--~~lg~~~~~Dg~ri 76 (234)
T KOG3206|consen 1 MVRVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELY--DGDDKKVSALSNED--ADLGFYKVEDGLRI 76 (234)
T ss_pred CeEEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEE--cCCCceeeeccCCc--ccccccCCCCceEE
Confidence 3677888887774 457899999999999999999999999999653 23 11122233443 34566788899999
Q ss_pred EEeccchhhh
Q 006021 84 RMMGVSEDEV 93 (664)
Q Consensus 84 mLmGs~~~eI 93 (664)
-++-+...-|
T Consensus 77 hviD~~~~~~ 86 (234)
T KOG3206|consen 77 HVIDSNAQSI 86 (234)
T ss_pred EEEecCcccc
Confidence 9998876666
No 58
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=92.32 E-value=0.16 Score=61.71 Aligned_cols=66 Identities=18% Similarity=0.349 Sum_probs=55.2
Q ss_pred EEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 10 VSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 10 ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
|+|| ...++++|.+....||++||..|.+.++|+.++|+||| .|..|.+ +.+++++++ .||.|-|+
T Consensus 5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~---~grvl~~-------~k~vq~~~v-dgk~~hlv 71 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIY---QGRVLQD-------DKKVQEYNV-DGKVIHLV 71 (1143)
T ss_pred eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeee---cceeecc-------chhhhhccC-CCeEEEee
Confidence 5554 56788999999999999999999999999999999999 5766653 256888998 88888665
No 59
>PRK04351 hypothetical protein; Provisional
Probab=90.74 E-value=0.25 Score=48.17 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhhhhc-------cCCcchhHHHHHHHH
Q 006021 226 YESIKKTLLHELAHMV-------YSEHDANFYGLDKQL 256 (664)
Q Consensus 226 ~~~I~~tllHELaH~v-------~g~Hd~~F~~L~~~L 256 (664)
.+.+..|+.|||||.. +.+||..|..++.++
T Consensus 58 ~~~l~~vv~HElcH~~~~~~g~g~~h~g~~fk~~~~~v 95 (149)
T PRK04351 58 LEELIGIIKHELCHYHLHLEGKGYQHRDRDFKELLKQV 95 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHh
Confidence 6889999999999972 457899998877654
No 60
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=90.43 E-value=1 Score=38.29 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=41.1
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEee
Q 006021 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~ 51 (664)
+++|+|.++|..+.|.++.+.|..+|..+|.+.++.+....+|-|
T Consensus 1 ~~~vK~~~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y 45 (81)
T smart00666 1 TVDVKLRYGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKY 45 (81)
T ss_pred CccEEEEECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEE
Confidence 367999999999999999999999999999999999887777777
No 61
>PRK04860 hypothetical protein; Provisional
Probab=89.84 E-value=0.31 Score=48.00 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHhhhhc-c---C---CcchhHHHHHHH
Q 006021 225 KYESIKKTLLHELAHMV-Y---S---EHDANFYGLDKQ 255 (664)
Q Consensus 225 p~~~I~~tllHELaH~v-~---g---~Hd~~F~~L~~~ 255 (664)
+.+.+..|+.|||||.+ | | +||..|..++.+
T Consensus 59 ~~~~l~~~v~HEl~H~~~~~~~g~~~~Hg~ewk~lm~~ 96 (160)
T PRK04860 59 QQAFIDEVVPHELAHLLVYQLFGRVAPHGKEWQWMMES 96 (160)
T ss_pred cHHHHHhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 56889999999999975 2 3 999999888765
No 62
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=88.74 E-value=0.75 Score=49.76 Aligned_cols=50 Identities=28% Similarity=0.329 Sum_probs=40.6
Q ss_pred EEEEEECCEE--E--EEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCC
Q 006021 9 KVSAIWRGKK--Y--VVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLS 61 (664)
Q Consensus 9 ~ItVk~~Gk~--~--~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~ 61 (664)
.+-|.++|+. | +|.++.+..|.+||+-++.++|||++.-|+|+ -|+.|.+
T Consensus 2 ~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viF---aGKeLs~ 55 (446)
T KOG0006|consen 2 IVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIF---AGKELSN 55 (446)
T ss_pred eEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEE---ecccccc
Confidence 3567777554 3 46788999999999999999999999999999 6776553
No 63
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=88.39 E-value=0.81 Score=38.75 Aligned_cols=65 Identities=12% Similarity=0.192 Sum_probs=40.3
Q ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 11 SAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 11 tVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.|.++++.+.|.+.++.|+.++=++.++.+|+.++.=-|.. +++ ..+ ..+++.-+||.+|.|+.|
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h---~~k-~ld------lslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKH---NNK-PLD------LSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEE---TTE-EES------SS-BHHHH---SS-EEEE
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEE---CCE-Eec------cccceeecCCCCCCEEeC
Confidence 47899999999999999999999999999999999666666 343 221 124455579999999876
No 64
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=86.89 E-value=1.6 Score=40.56 Aligned_cols=66 Identities=15% Similarity=0.239 Sum_probs=42.6
Q ss_pred CCE-EEEEEeCCCCCHHHHHHHHHHHh----C---CCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCc-----
Q 006021 15 RGK-KYVVEVNSGSPLKELGHELQKLT----D---VKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK----- 81 (664)
Q Consensus 15 ~Gk-~~~i~l~~d~TV~dLK~~Ie~lT----g---VPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~----- 81 (664)
.|+ ...+.++++.||++||+.|.... . ..+...|||+ .|++|.+ ..+|.++.+..|.
T Consensus 11 ~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~---~GriL~d-------~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 11 DGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY---AGRILED-------NKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE---TTEEE-S-------SSBTGGGT--TTSETT--
T ss_pred CCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEe---CCeecCC-------cCcHHHhCCCCCCCCCCC
Confidence 566 78899999999999999998743 1 1335589998 6876552 2467777776666
Q ss_pred eEEEeccch
Q 006021 82 SIRMMGVSE 90 (664)
Q Consensus 82 KImLmGs~~ 90 (664)
.+|-|-...
T Consensus 81 ~vmHlvvrp 89 (111)
T PF13881_consen 81 TVMHLVVRP 89 (111)
T ss_dssp EEEEEEE-S
T ss_pred EEEEEEecC
Confidence 366665443
No 65
>KOG2699 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.52 E-value=0.33 Score=54.07 Aligned_cols=63 Identities=16% Similarity=0.096 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcC
Q 006021 558 QKAIEMLRAEVSP-LESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVG 624 (664)
Q Consensus 558 ~~ai~~i~~~n~~-~~~~~al~tL~Kil~NIi~~P~e~KyRrIR~sN~~F~~kV~~~~Ga~e~L~a~G 624 (664)
-.++..+...+.+ +-...+.++..|+..|+-.||+.+|||.+ +.|..|+++| .|+.+.|.++=
T Consensus 152 ~ss~~~~~~~~k~~e~se~~~d~~~kqe~~~~~~pE~ek~R~r-l~~el~~~~v---~g~he~le~v~ 215 (407)
T KOG2699|consen 152 PSSLTKIFVNTKAKELSESGRDIRQKQEQNTERNPEREKERKR-LGNELLKEKV---LGCHEPLEAVL 215 (407)
T ss_pred chhhhhccccccchhhhhhhhhhHHHhhhhhccchhhhhhhhc-cccchhhccc---ccccchHHHHH
Confidence 3444555555555 44788999999999999999999999888 9999999999 78888888883
No 66
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=86.19 E-value=2.4 Score=37.54 Aligned_cols=36 Identities=6% Similarity=0.141 Sum_probs=34.0
Q ss_pred eEEEEEECCEEEEEEeCC--CCCHHHHHHHHHHHhCCC
Q 006021 8 LKVSAIWRGKKYVVEVNS--GSPLKELGHELQKLTDVK 43 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~--d~TV~dLK~~Ie~lTgVP 43 (664)
|+|.++|+|.+..|.+++ +.|..+|+++|...++++
T Consensus 1 V~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 1 VNLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred CEEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 589999999999999999 669999999999999999
No 67
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=85.74 E-value=3.4 Score=36.27 Aligned_cols=77 Identities=17% Similarity=0.284 Sum_probs=56.4
Q ss_pred eEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 8 LKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
|.|+|+ |++...++.++|..+|..+|++|....+.+- -|+|-+-- .|+... ..+ +..+|+.+||=....|.||
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQe-pgg~rq-lL~---s~~sLA~yGiFs~~~i~ll 74 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQE-PGGERQ-LLS---SRKSLADYGIFSKTNICLL 74 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeec-CCcccc-ccc---ccccHhhhcceeccEEEEE
Confidence 346664 6777788999999999999999999999987 88886621 233211 111 2356888999888899988
Q ss_pred ccch
Q 006021 87 GVSE 90 (664)
Q Consensus 87 Gs~~ 90 (664)
-|-.
T Consensus 75 eT~p 78 (80)
T cd01811 75 ETFP 78 (80)
T ss_pred ecCC
Confidence 7643
No 68
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=85.37 E-value=3.1 Score=35.35 Aligned_cols=45 Identities=9% Similarity=0.223 Sum_probs=41.9
Q ss_pred eeEEEEEECCEEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCceEee
Q 006021 7 MLKVSAIWRGKKYV-VEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~-i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~ 51 (664)
++.|.++|+|..+- +.++.+.|..+|...|.+.++.+...-+|-|
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y 46 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKY 46 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEE
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEe
Confidence 57899999999999 9999999999999999999999977788877
No 69
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=84.54 E-value=2.3 Score=37.52 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=34.6
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 006021 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKA 44 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPp 44 (664)
++|.++|+|..+.|.++++.+..+|+.+|.+.+++..
T Consensus 1 ~~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~ 37 (82)
T cd06407 1 VRVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDD 37 (82)
T ss_pred CEEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999999999999853
No 70
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=83.91 E-value=1.1 Score=43.91 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhhc-------cCCcchhHHHHHHHH
Q 006021 227 ESIKKTLLHELAHMV-------YSEHDANFYGLDKQL 256 (664)
Q Consensus 227 ~~I~~tllHELaH~v-------~g~Hd~~F~~L~~~L 256 (664)
+.|.+++.|||||.. +-|||..|..|+.++
T Consensus 59 ~f~~~vV~HELaHl~ly~~~gr~~phg~ewk~lm~qV 95 (156)
T COG3091 59 DFIEQVVPHELAHLHLYQEFGRYKPHGKEWKLLMQQV 95 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHh
Confidence 579999999999974 349999999988755
No 71
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=82.72 E-value=3.9 Score=36.24 Aligned_cols=45 Identities=11% Similarity=0.184 Sum_probs=41.4
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeecc
Q 006021 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQ 53 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk 53 (664)
..|.|+|.+ ++.|.++++.+..+|...|.+.+.+|++..+|=|..
T Consensus 3 ~vvKV~f~~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd 47 (80)
T cd06406 3 YVVKVHFKY-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS 47 (80)
T ss_pred eEEEEEEEE-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence 568899998 889999999999999999999999999999998843
No 72
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=82.51 E-value=2.7 Score=38.41 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=40.4
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEee
Q 006021 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~ 51 (664)
+-|.|+.++.+|=++..++.||-+||..|+.++.-|+..|+|.-
T Consensus 3 ~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~k 46 (110)
T KOG4495|consen 3 VFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYK 46 (110)
T ss_pred eeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheee
Confidence 45788999988889999999999999999999999999999974
No 73
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.03 E-value=1.2 Score=38.08 Aligned_cols=59 Identities=20% Similarity=0.349 Sum_probs=44.1
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCC-CCCCCCCcccccccccccccCCCceEEE
Q 006021 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGS-KLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 16 Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~-~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
||+..|..++++||+|||..|+..||-.|+..-|= |+. ..+ | ..+|+.+-+..|..+-|
T Consensus 11 GKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~----k~~~i~k----d---~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 11 GKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLK----KWYTIFK----D---HITLSDYEIHDGMNLEL 70 (73)
T ss_pred CceEEEEeCCcccccCHHHHHHHhhCCChhHhHHH----hhhhhhh----c---ccceeeEEeccCccEEE
Confidence 77888999999999999999999999998864331 332 222 1 25677788888876654
No 74
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=80.47 E-value=3.3 Score=36.71 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=36.5
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 006021 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADT 46 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~ 46 (664)
++++|+|+|.+.-|.++.+.|...|+.+|+.++++|+..
T Consensus 1 ~~fKv~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~ 39 (82)
T cd06397 1 TQFKSSFLGDTRRIVFPDIPTWEALASKLENLYNLPEIK 39 (82)
T ss_pred CeEEEEeCCceEEEecCCCccHHHHHHHHHHHhCCChhH
Confidence 368899999999999999999999999999999999885
No 75
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=80.35 E-value=12 Score=32.06 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=52.4
Q ss_pred CeeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006021 6 SMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
....|.|+ -+|+.....+++++||.++.+-|....+.....=.|+.+-.+ + .+.+.....||.++|+.++..++
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Pr--k---~l~~~d~~~tL~e~gL~p~~~l~ 77 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPR--R---TFTKDDYSKTLLELALLPSSTLV 77 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCC--c---CCccccccCCHHHCCCCCceEEE
Confidence 35667777 567778889999999999999997767766666677642111 1 22222224689999999888877
Q ss_pred E
Q 006021 85 M 85 (664)
Q Consensus 85 L 85 (664)
|
T Consensus 78 v 78 (80)
T smart00166 78 L 78 (80)
T ss_pred E
Confidence 5
No 76
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=78.82 E-value=5.2 Score=33.73 Aligned_cols=44 Identities=11% Similarity=0.192 Sum_probs=37.4
Q ss_pred eEEEEEECCEEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCceEee
Q 006021 8 LKVSAIWRGKKYVVEVN-SGSPLKELGHELQKLTDVKADTMRFIV 51 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~-~d~TV~dLK~~Ie~lTgVPpe~QKLL~ 51 (664)
+.|.|+|+|..+.+.++ .+.|..+|..+|.+.++.+...-+|-|
T Consensus 1 ~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y 45 (81)
T cd05992 1 VRVKVKYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKY 45 (81)
T ss_pred CcEEEEecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEe
Confidence 46899999999999998 999999999999999999873334434
No 77
>KOG3931 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.91 E-value=3.9 Score=44.98 Aligned_cols=51 Identities=29% Similarity=0.432 Sum_probs=39.4
Q ss_pred CCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhc---------cCCcchhHHHHHHHHH
Q 006021 206 NHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMV---------YSEHDANFYGLDKQLN 257 (664)
Q Consensus 206 N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v---------~g~Hd~~F~~L~~~L~ 257 (664)
.+|--+.|||-.+ ..-.||..+++.|||||+-|-. .+.|+++|.+.+..|+
T Consensus 83 g~gg~csIRLSeP-LLkLRPRkDLVETLLHEMIHAYlFV~n~~~dr~GHGP~F~~hMhrIN 142 (484)
T KOG3931|consen 83 GKGGMCSIRLSEP-LLKLRPRKDLVETLLHEMIHAYLFVTNNDKDREGHGPEFCKHMHRIN 142 (484)
T ss_pred cccceEEEEecch-hhccCchHHHHHHHHHHHHHHheeEecccccCCCCChHHHHHHHHHh
Confidence 3455677777543 3568999999999999999953 4689999999887764
No 78
>KOG3854 consensus SPRT-like metalloprotease [Function unknown]
Probab=77.37 E-value=1.8 Score=49.18 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=27.8
Q ss_pred CccEEEEEeecCCCCCccchHHHHHHHHHHhhhh-------ccCCcchhHHH
Q 006021 207 HGEEISLRLRTDDLKGFRKYESIKKTLLHELAHM-------VYSEHDANFYG 251 (664)
Q Consensus 207 ~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~-------v~g~Hd~~F~~ 251 (664)
+-.+|+|-+---. --+.|+.||+|||||- .+.+|++.|..
T Consensus 334 r~A~IeLs~kV~t-----TAERir~TLiHEmCHaAaWv~dr~e~gHGd~wKr 380 (505)
T KOG3854|consen 334 RYAKIELSDKVCT-----TAERIRDTLIHEMCHAAAWVFDREELGHGDNWKR 380 (505)
T ss_pred ceeEEEehhhhhh-----HHHHHHHHHHHHHHHHHHhhccccccCcchHHHH
Confidence 3456776553311 1278999999999994 27899998654
No 79
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=72.63 E-value=24 Score=30.08 Aligned_cols=74 Identities=12% Similarity=0.246 Sum_probs=53.8
Q ss_pred CeeEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC-ceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006021 6 SMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADT-MRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 6 ~~i~ItVk~~-Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~-QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
..+.|.|++- |+.+.-.+..++||.+|-.-|......+... =.|+..-++- .+.+.. ..+|.++|+.++..|
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~-----~l~~~~-~~tl~e~~l~p~~~l 78 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRR-----ELTDED-SKTLEEAGLLPSATL 78 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTE-----ECCSTT-TSBTCCCTTSSCEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCc-----CCCccc-cccHHHhcCCCCeEE
Confidence 4678888875 5677789999999999999999999888875 4565311111 122222 368999999999888
Q ss_pred EE
Q 006021 84 RM 85 (664)
Q Consensus 84 mL 85 (664)
++
T Consensus 79 ~v 80 (82)
T PF00789_consen 79 IV 80 (82)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 80
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=72.11 E-value=2.6 Score=43.09 Aligned_cols=53 Identities=25% Similarity=0.284 Sum_probs=39.9
Q ss_pred cEEEEEeec-CC-C--CCccchHHHHHHHHHHhhhhcc-CCcchhHHHHHHHHHHHHHHhh
Q 006021 209 EEISLRLRT-DD-L--KGFRKYESIKKTLLHELAHMVY-SEHDANFYGLDKQLNQEAVALD 264 (664)
Q Consensus 209 ~~I~LRLRt-~d-~--~~Flp~~~I~~tllHELaH~v~-g~Hd~~F~~L~~~L~~E~~~l~ 264 (664)
-+|.+-++. .+ . +.++ .+|.++|.|||+||+. .+++..++.|..-|- ++.++.
T Consensus 74 ~~I~~S~~~i~~~~~~~~~~--~Ei~Gvl~HE~~H~~Q~~~~~~~P~~liEGIA-DyVRl~ 131 (205)
T PF04450_consen 74 KEIHFSARYIAKYPADGDVR--DEIIGVLYHEMVHCWQWDGRGTAPGGLIEGIA-DYVRLK 131 (205)
T ss_pred cEEEEeHHHHhhcccccchH--HHHHHHHHHHHHHHhhcCCCCCCChhheecHH-HHHHHH
Confidence 778888777 11 1 2333 7999999999999995 669999999988876 444554
No 81
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=71.91 E-value=14 Score=33.33 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=36.9
Q ss_pred eEEEEEECCEEEEEEeCC-----CCCHHHHHHHHHHHhCCCCCCceEe
Q 006021 8 LKVSAIWRGKKYVVEVNS-----GSPLKELGHELQKLTDVKADTMRFI 50 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~-----d~TV~dLK~~Ie~lTgVPpe~QKLL 50 (664)
+.|+|+|+|..+-|.++. +.+..+|+++|.+++++++...=.|
T Consensus 1 l~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l 48 (91)
T cd06398 1 LVVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSL 48 (91)
T ss_pred CEEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEE
Confidence 368999999999999985 7999999999999999987554444
No 82
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=70.99 E-value=3.1 Score=43.29 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=25.0
Q ss_pred CCCccchHHHHHHHHHHhhhhccCCcchhH
Q 006021 220 LKGFRKYESIKKTLLHELAHMVYSEHDANF 249 (664)
Q Consensus 220 ~~~Flp~~~I~~tllHELaH~v~g~Hd~~F 249 (664)
+....++..+..||.|||.||.-++||..-
T Consensus 158 ~~~~~~~~~~a~t~AHElGHnlGm~HD~~~ 187 (244)
T cd04270 158 YGKRVPTKESDLVTAHELGHNFGSPHDPDI 187 (244)
T ss_pred cCCccchhHHHHHHHHHHHHhcCCCCCCCC
Confidence 344567777889999999999999999864
No 83
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=70.23 E-value=24 Score=30.51 Aligned_cols=71 Identities=13% Similarity=0.219 Sum_probs=49.8
Q ss_pred eeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEee--ccCCCCCCCCCCCcccccccccccccCCCceE
Q 006021 7 MLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV--PQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 7 ~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~--pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
...|.|+ .+|+...-.++.++||.++.+-|....+.. ..-+|+- |+ | .+.++....||.++||.|...|
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPr-k------~~~~~d~~~TL~elgL~Psa~L 75 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPR-K------VFTEDDMEKPLQELGLVPSAVL 75 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCC-e------ECCcccccCCHHHCCCCCceEE
Confidence 3556676 678888889999999999999998766543 4455653 31 1 2222222468999999988877
Q ss_pred EE
Q 006021 84 RM 85 (664)
Q Consensus 84 mL 85 (664)
+|
T Consensus 76 ~v 77 (79)
T cd01772 76 IV 77 (79)
T ss_pred EE
Confidence 76
No 84
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=69.64 E-value=4.6 Score=35.70 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=17.4
Q ss_pred chHHHHHHHHHHhhhhccCCcc
Q 006021 225 KYESIKKTLLHELAHMVYSEHD 246 (664)
Q Consensus 225 p~~~I~~tllHELaH~v~g~Hd 246 (664)
+...+..++.|||+|.+++...
T Consensus 21 ~~~~~~~~l~HE~~H~~~~~~~ 42 (128)
T PF13485_consen 21 DEDWLDRVLAHELAHQWFGNYF 42 (128)
T ss_pred CHHHHHHHHHHHHHHHHHHHHc
Confidence 4466779999999999877544
No 85
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=68.53 E-value=5.2 Score=42.27 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=20.5
Q ss_pred cchHHHHHHHHHHhhhhccCCcchh
Q 006021 224 RKYESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~Hd~~ 248 (664)
+.-+++..+++|||+|+.+++.=.+
T Consensus 191 ~~~~el~~il~HEl~Hikr~D~~~~ 215 (299)
T PF05569_consen 191 LSEEELRAILLHELAHIKRRDLLWK 215 (299)
T ss_pred cCHHHHHHHHHHHHHHHHCCChHHH
Confidence 4668999999999999998875443
No 86
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=67.47 E-value=13 Score=33.32 Aligned_cols=42 Identities=7% Similarity=0.186 Sum_probs=37.5
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEee
Q 006021 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~ 51 (664)
.|+|.|+++|..+.|.++++.+..+|..+|.+.+++. |.|-+
T Consensus 2 ~ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~---~~~~i 43 (86)
T cd06408 2 KIRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK---RRLKI 43 (86)
T ss_pred cEEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC---CceEE
Confidence 4889999999999999999999999999999999994 55543
No 87
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=67.11 E-value=5.4 Score=34.94 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=19.7
Q ss_pred cchHHHHHHHHHHhhhhccCCcchhH
Q 006021 224 RKYESIKKTLLHELAHMVYSEHDANF 249 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~Hd~~F 249 (664)
++...-+-|++|||+|.....+...+
T Consensus 37 ~~~~~~~f~laHELgH~~~~~~~~~~ 62 (122)
T PF06114_consen 37 LSPERQRFTLAHELGHILLHHGDETF 62 (122)
T ss_dssp S-HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhhccccc
Confidence 44567788999999999988887653
No 88
>PRK04897 heat shock protein HtpX; Provisional
Probab=65.19 E-value=4.3 Score=43.48 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=36.8
Q ss_pred HHHHhhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCcc
Q 006021 171 IAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHD 246 (664)
Q Consensus 171 ~piM~~~~w~V~~L~E~~P~~~~~~s~~~lLGlN~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~g~Hd 246 (664)
..+.++.|+.++.+..+. ... ...-..|++.+++ .|.+- + ..-.-++-+++..+|+|||+|.+|++.-
T Consensus 87 ~~la~~~gip~p~v~v~~-~~~---~NAfa~G~~~~~~-~v~vt--~-gLl~~l~~~El~aVlAHElgHi~~~d~~ 154 (298)
T PRK04897 87 EDMAMVAQIPMPRVFIID-DPS---PNAFATGSSPKNA-AVAVT--T-GLLAIMNREELEGVIGHEISHIRNYDIR 154 (298)
T ss_pred HHHHHHcCCCCCcEEEec-CCC---CceEEeccCCCCc-EEEee--h-HHHhhCCHHHHHHHHHHHHHHHhcCCHH
Confidence 334445555555555442 110 1134567665433 23332 1 0111235599999999999999987653
No 89
>PRK03072 heat shock protein HtpX; Provisional
Probab=64.06 E-value=4.7 Score=43.05 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=20.1
Q ss_pred ccchHHHHHHHHHHhhhhccCCcc
Q 006021 223 FRKYESIKKTLLHELAHMVYSEHD 246 (664)
Q Consensus 223 Flp~~~I~~tllHELaH~v~g~Hd 246 (664)
-++-+++..++.|||+|+.+++--
T Consensus 121 ~l~~~El~aVlAHElgHi~~~d~~ 144 (288)
T PRK03072 121 ILNERELRGVLGHELSHVYNRDIL 144 (288)
T ss_pred hCCHHHHHHHHHHHHHHHhcCCHH
Confidence 346799999999999999987643
No 90
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=63.73 E-value=25 Score=31.78 Aligned_cols=63 Identities=10% Similarity=0.268 Sum_probs=40.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 18 KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 18 ~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.++..+...+||..+..++.+++.| ++.-+|-....-++. ....+. ..|+.+++|..|+.|+|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~--e~L~~~--~~Tv~da~L~~gQ~vli 77 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSY--ELLNNP--EITVEDAGLYDGQVVLI 77 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCE--EEE--T--TSBTTTTT--TTEEEEE
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcch--hhhCCC--CccHHHccCcCCCEEEE
Confidence 6777888999999999999999999 666788652211211 011111 36789999999998876
No 91
>PRK03982 heat shock protein HtpX; Provisional
Probab=63.54 E-value=4.9 Score=42.73 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHhhhhccCCc
Q 006021 224 RKYESIKKTLLHELAHMVYSEH 245 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~H 245 (664)
++-++|..+|+|||+|..|++.
T Consensus 120 l~~~El~AVlAHElgHi~~~h~ 141 (288)
T PRK03982 120 LNEDELEGVIAHELTHIKNRDT 141 (288)
T ss_pred CCHHHHHHHHHHHHHHHHcCCH
Confidence 4668999999999999999864
No 92
>PRK03001 M48 family peptidase; Provisional
Probab=61.67 E-value=5.6 Score=42.19 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=17.9
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 006021 225 KYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 225 p~~~I~~tllHELaH~v~g~ 244 (664)
+-+++..+|+|||+|.+|++
T Consensus 120 ~~~El~aVlAHElgHi~~~h 139 (283)
T PRK03001 120 SEREIRGVMAHELAHVKHRD 139 (283)
T ss_pred CHHHHHHHHHHHHHHHhCCC
Confidence 56899999999999999874
No 93
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=61.62 E-value=10 Score=35.70 Aligned_cols=50 Identities=30% Similarity=0.290 Sum_probs=33.3
Q ss_pred ccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhcc------CCcc--hhHHHHHH
Q 006021 200 VLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVY------SEHD--ANFYGLDK 254 (664)
Q Consensus 200 lLGlN~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~------g~Hd--~~F~~L~~ 254 (664)
.|||| .+-.|+|-- .. ..-|+-++=+++|+|||.|+-. .+|+ .+||..++
T Consensus 56 ~lgln--P~YviEl~s-ek--F~rLs~~ekvKviiHEllHIP~tfSGgLRaHg~~vn~rrv~k 113 (133)
T COG4900 56 VLGLN--PVYVIELLS-EK--FKRLSCAEKVKVIIHELLHIPATFSGGLRAHGPLVNFRRVYK 113 (133)
T ss_pred HhCCC--Ceeeeeeeh-hh--cCCCChHHHHHHHHHHHhcCcccccCccccCCcchhHHHHHH
Confidence 45554 466666532 10 1235678899999999999974 3898 78887554
No 94
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=61.54 E-value=5.1 Score=41.78 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=37.5
Q ss_pred HHHhhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCcch
Q 006021 172 AIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDA 247 (664)
Q Consensus 172 piM~~~~w~V~~L~E~~P~~~~~~s~~~lLGlN~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~g~Hd~ 247 (664)
.....+.|.|.....-.|. .=-+|.+.+. -+|.|- + ..-.-+.-++|..||.||++|.+|+++=.
T Consensus 111 ~~~~~~~~~v~i~~~~~~N-------AFa~g~~~~~-~~V~vt--~-gLl~~l~~dEl~aVlaHElgHi~~rd~~~ 175 (302)
T COG0501 111 QAGIPHMPEVYILETPQPN-------AFALGGGPKN-GRVVVT--T-GLLDLLNDDELEAVLAHELGHIKNRHTLV 175 (302)
T ss_pred HCCCCCCCeeEEecCCCcc-------ceecCCCCCC-eeEEec--H-HHHhhCCHHHHHHHHHHHHHHHhcccHHH
Confidence 3334445777777644444 2244544322 233331 1 11114566999999999999999986543
No 95
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=60.06 E-value=25 Score=32.11 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=33.9
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006021 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 16 Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
.++|+|.+++++|=.++|.++++++||.+..-..|+-
T Consensus 21 ~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~ 57 (94)
T COG0089 21 ENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNT 57 (94)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEe
Confidence 3689999999999999999999999999999888863
No 96
>PRK02870 heat shock protein HtpX; Provisional
Probab=59.80 E-value=6 Score=43.41 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=26.5
Q ss_pred CcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCC
Q 006021 198 KCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 198 ~~lLGlN~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~g~ 244 (664)
.-..|++.+.| .|.|- +..-.-++-+++..+|+|||+|..|++
T Consensus 146 AFA~G~~~~~~-~Ivvt---~GLL~~L~~dEL~aVlAHELgHik~~d 188 (336)
T PRK02870 146 AFASGYSEKSA-MVAIT---TGLLEKLDRDELQAVMAHELSHIRHGD 188 (336)
T ss_pred eEEecCCCCCc-EEEEe---hHHhhhCCHHHHHHHHHHHHHHHHccc
Confidence 34567665333 33331 111112366999999999999997754
No 97
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=59.79 E-value=18 Score=32.95 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=32.9
Q ss_pred EEEEECCEEEE--EEeC--CCCCHHHHHHHHHHHhC--CCCCCceEeeccCCCCCCC
Q 006021 10 VSAIWRGKKYV--VEVN--SGSPLKELGHELQKLTD--VKADTMRFIVPQNKGSKLL 60 (664)
Q Consensus 10 ItVk~~Gk~~~--i~l~--~d~TV~dLK~~Ie~lTg--VPpe~QKLL~pk~KG~~Lk 60 (664)
|+|.|....-+ ++++ ...||.+||..|.+... ..-.++|||+ .|..|.
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~---~Gr~L~ 56 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIY---AGRLLN 56 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeee---cCcccC
Confidence 44555443333 4455 77999999999999983 3446688898 687654
No 98
>PRK02391 heat shock protein HtpX; Provisional
Probab=59.69 E-value=6.3 Score=42.39 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.7
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 006021 224 RKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~ 244 (664)
++-+++..++.|||+|..|++
T Consensus 128 L~~~El~aVlaHElgHi~~~d 148 (296)
T PRK02391 128 LDPDELEAVLAHELSHVKNRD 148 (296)
T ss_pred CCHHHHHHHHHHHHHHHHcCC
Confidence 456999999999999999885
No 99
>PRK05457 heat shock protein HtpX; Provisional
Probab=59.15 E-value=6.5 Score=42.00 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=18.8
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 006021 224 RKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~ 244 (664)
++-+++..++.|||+|..|++
T Consensus 129 L~~~El~aVlAHElgHi~~~d 149 (284)
T PRK05457 129 MSRDEVEAVLAHEISHIANGD 149 (284)
T ss_pred CCHHHHHHHHHHHHHHHHcCC
Confidence 466999999999999999875
No 100
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=59.15 E-value=41 Score=28.55 Aligned_cols=71 Identities=17% Similarity=0.240 Sum_probs=44.8
Q ss_pred eEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006021 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 8 i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
.+|.|+. +|+...-.++.++||.+|.+-|.....- ...-.|+..-++ ..+.+.....||.++||.++.-++
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr-----~~~~~~~~~~TL~e~gL~~s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPR-----RVLTDLDYELTLQEAGLVNEVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCC-----ccCCCCCccCcHHHcCCccceEEE
Confidence 3455544 5667778999999999999999876543 444556531111 122332234789999998655443
No 101
>PRK01345 heat shock protein HtpX; Provisional
Probab=57.45 E-value=7.1 Score=42.36 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.4
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 006021 224 RKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~ 244 (664)
++-++|..+|+|||+|.+|++
T Consensus 119 L~~dEL~aVlAHElgHi~~~d 139 (317)
T PRK01345 119 LSPEEVAGVMAHELAHVKNRD 139 (317)
T ss_pred CCHHHHHHHHHHHHHHHHcCC
Confidence 456899999999999999865
No 102
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=56.96 E-value=22 Score=37.89 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=47.4
Q ss_pred EEEEEECCE--EEE-EEeCCCCCHHHHHHHH-HHHhCCCCCCceEeecc-CCCCCCCCCCCcccccccccccccCCCceE
Q 006021 9 KVSAIWRGK--KYV-VEVNSGSPLKELGHEL-QKLTDVKADTMRFIVPQ-NKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 9 ~ItVk~~Gk--~~~-i~l~~d~TV~dLK~~I-e~lTgVPpe~QKLL~pk-~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
+|++.-|++ ..+ ..++..+|+.|++.+| ++....-+.+|++-.+. .||+-+.+ ..+|+++++.+|.+|
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~-------~s~l~e~~~~s~~~i 74 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLID-------NSKLQEYGDGSGATI 74 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccc-------hhHHHHhccCCCCEE
Confidence 477777777 444 4567788999999555 55677888777765433 46653432 245888998888776
Q ss_pred EE
Q 006021 84 RM 85 (664)
Q Consensus 84 mL 85 (664)
-+
T Consensus 75 ~v 76 (297)
T KOG1639|consen 75 YV 76 (297)
T ss_pred EE
Confidence 65
No 103
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=56.06 E-value=7.4 Score=38.55 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=28.7
Q ss_pred ccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCcchh
Q 006021 200 VLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 200 lLGlN~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~g~Hd~~ 248 (664)
.+|.+. +..|.|--.- -.-++-+++..+|.|||+|+.++..-..
T Consensus 65 ~~g~~~--~~~I~v~~~l---l~~~~~~el~aVlaHElgH~~~~h~~~~ 108 (226)
T PF01435_consen 65 ATGGGP--RKRIVVTSGL---LESLSEDELAAVLAHELGHIKHRHILKS 108 (226)
T ss_dssp EETTTC----EEEEEHHH---HHHSSHHHHHHHHHHHHHHHHTTHCCCC
T ss_pred EEccCC--CcEEEEeChh---hhcccHHHHHHHHHHHHHHHHcCCcchH
Confidence 455544 4555554322 1235568999999999999998877666
No 104
>PF13058 DUF3920: Protein of unknown function (DUF3920)
Probab=55.63 E-value=6.3 Score=36.96 Aligned_cols=20 Identities=45% Similarity=0.795 Sum_probs=17.7
Q ss_pred ccchHHHHHHHHHHhhhhcc
Q 006021 223 FRKYESIKKTLLHELAHMVY 242 (664)
Q Consensus 223 Flp~~~I~~tllHELaH~v~ 242 (664)
|-.|+.|+.||+||+-|-..
T Consensus 70 we~y~qvlktllhefrh~mQ 89 (126)
T PF13058_consen 70 WEEYEQVLKTLLHEFRHAMQ 89 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999999655
No 105
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=54.73 E-value=56 Score=29.04 Aligned_cols=73 Identities=15% Similarity=0.307 Sum_probs=54.2
Q ss_pred CCeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEe--eccCCCCCCCCCCCcccccccccccccCCCc
Q 006021 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFI--VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 5 ~~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL--~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
+..-.|.|.. +|+...-.+..+.|+++|-.-+.. -|.+++.-+|| +|+ | .++......||.++||.|..
T Consensus 3 ~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPR-r------~~~~~d~~~TL~e~GL~P~~ 74 (82)
T cd01773 3 GPKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPR-R------KLSHLDYDITLQEAGLCPQE 74 (82)
T ss_pred CCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCC-c------ccCCcccCCCHHHcCCCCCc
Confidence 3455666665 678888899999999999999998 58899999998 453 1 11112223689999999888
Q ss_pred eEEE
Q 006021 82 SIRM 85 (664)
Q Consensus 82 KImL 85 (664)
.|.+
T Consensus 75 ~LfV 78 (82)
T cd01773 75 TVFV 78 (82)
T ss_pred EEEE
Confidence 7765
No 106
>PRK01265 heat shock protein HtpX; Provisional
Probab=54.67 E-value=8.4 Score=42.14 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.5
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 006021 224 RKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~ 244 (664)
++-+++..++.|||+|..|++
T Consensus 135 l~~~El~aVlAHElgHik~~d 155 (324)
T PRK01265 135 LNRDEIKAVAGHELGHLKHRD 155 (324)
T ss_pred CCHHHHHHHHHHHHHHHHccc
Confidence 467999999999999988775
No 107
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=54.65 E-value=10 Score=42.20 Aligned_cols=41 Identities=27% Similarity=0.248 Sum_probs=27.7
Q ss_pred ccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCC
Q 006021 204 NKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 204 N~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~g~ 244 (664)
.-|.|+-+.|-.-+-...+---.+.+..||.||+-|+++-.
T Consensus 114 ~SNe~e~~YiD~~~~~~~~~~~~~~~~sTlAHEfQHmInfy 154 (366)
T PF10460_consen 114 YSNESEYFYIDSETLYLGGNSGPDTVYSTLAHEFQHMINFY 154 (366)
T ss_pred CCcceeEEEEecHHhhccCCccHHHHHHHHHHHHHHHHHHH
Confidence 34667777776654211222227889999999999999654
No 108
>COG5417 Uncharacterized small protein [Function unknown]
Probab=51.15 E-value=74 Score=28.17 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=48.5
Q ss_pred eEEEE---EECCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-----CCceEeeccCCCCCCCCCCCcccccccccccccCC
Q 006021 8 LKVSA---IWRGKKYVVEVNSGSPLKELGHELQKLTDVKA-----DTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIE 79 (664)
Q Consensus 8 i~ItV---k~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPp-----e~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~ 79 (664)
|.||| .|+|.+|++.++.--++..|=.-+.+...|.. ...|.+. |+.+|- ++ .-|...++.+
T Consensus 5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~n---Ka~lls----gd---~kL~d~~Iad 74 (81)
T COG5417 5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMN---KAQLLS----GD---DKLIDYQIAD 74 (81)
T ss_pred EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEec---cceEec----CC---ceEEeccccC
Confidence 55555 58999999999999999999988888776642 2356666 775443 22 2367788888
Q ss_pred CceEEE
Q 006021 80 GKSIRM 85 (664)
Q Consensus 80 G~KImL 85 (664)
|-.+-+
T Consensus 75 GD~Lei 80 (81)
T COG5417 75 GDILEI 80 (81)
T ss_pred CCEEEe
Confidence 876654
No 109
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=50.81 E-value=13 Score=45.66 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHHHhhhhccCCcchhHHH
Q 006021 223 FRKYESIKKTLLHELAHMVYSEHDANFYG 251 (664)
Q Consensus 223 Flp~~~I~~tllHELaH~v~g~Hd~~F~~ 251 (664)
--.|+.|-.|.+|||||+++|+==-..|.
T Consensus 301 ~~~~~~~~~viaHElaHqWfGnlVT~~~W 329 (859)
T COG0308 301 DSDYENVEEVIAHELAHQWFGNLVTMKWW 329 (859)
T ss_pred hHHHHHHHHHHHHHHhhhcccceeeccCH
Confidence 34558889999999999999975544443
No 110
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=50.56 E-value=6.4 Score=40.67 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=16.7
Q ss_pred HHHHHHhhhhccCCcchh
Q 006021 231 KTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 231 ~tllHELaH~v~g~Hd~~ 248 (664)
.||.|||.||.-++||..
T Consensus 147 ~t~AHElGHnLGm~HD~~ 164 (228)
T cd04271 147 QVFAHEIGHTFGAVHDCT 164 (228)
T ss_pred eehhhhhhhhcCCCCCCC
Confidence 799999999999999974
No 111
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=48.77 E-value=11 Score=36.96 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=17.4
Q ss_pred ccchHHHHHHHHHHhhhhccCCcchhH
Q 006021 223 FRKYESIKKTLLHELAHMVYSEHDANF 249 (664)
Q Consensus 223 Flp~~~I~~tllHELaH~v~g~Hd~~F 249 (664)
..+...-..|+.|||.|+.-.+||..-
T Consensus 136 ~~~~~~~~~~~AHEiGH~lGa~HD~~~ 162 (196)
T PF13688_consen 136 VPPTYNGAITFAHEIGHNLGAPHDGDY 162 (196)
T ss_dssp E--HHHHHHHHHHHHHHHTT-----SS
T ss_pred ECCCCceehhhHHhHHHhcCCCCCCCC
Confidence 356788889999999999999998763
No 112
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=48.66 E-value=42 Score=30.05 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=34.4
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 006021 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKA 44 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPp 44 (664)
|+|++.|+|..+.+.++++.|..+|.+++.++.....
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~~~~ 37 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCRFHN 37 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999999999999853
No 113
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.16 E-value=27 Score=38.46 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=51.2
Q ss_pred EEEEECCEEE--EEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 10 VSAIWRGKKY--VVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 10 ItVk~~Gk~~--~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
++|-+.|++. ...+.-.-||.||+..|..+.||.+.++||++.+..|.. ++|+.....+.|-...|..|-.|.+
T Consensus 339 vk~l~~~~~v~~s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt--~~~ss~~~N~~L~~fkIedGDs~lv 414 (418)
T KOG2982|consen 339 VKALNSGPKVIASGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRT--DDFSSSDYNMPLHYFKIEDGDSFLV 414 (418)
T ss_pred eeeeccCCccccceEEEeehHHHHHHHHhccccccccceeEEEEEcccCcc--CCccccCCCCcceEEeccCCCEeee
Confidence 3444444433 345666779999999999999999999999998866652 3444333456666677777766543
No 114
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=47.51 E-value=17 Score=37.60 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=28.2
Q ss_pred ccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCcchh
Q 006021 204 NKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 204 N~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~g~Hd~~ 248 (664)
|-+.+-.|.| +. ..-.....+.++|.|||=||+-..|.+-
T Consensus 113 ~G~P~~~I~I---~~--~~~~~~~~~~hvi~HEiGH~IGfRHTD~ 152 (211)
T PF12388_consen 113 NGNPYKFIQI---YG--LSNYSVNVIEHVITHEIGHCIGFRHTDY 152 (211)
T ss_pred CCCCCceEEE---Ee--cCCCchhHHHHHHHHHhhhhccccccCc
Confidence 3445567777 21 1223456799999999999999999763
No 115
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=46.67 E-value=91 Score=27.26 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=50.9
Q ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEe--eccCCCCCCCCCCCcccccccccccccCCCceE
Q 006021 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFI--VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 7 ~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL--~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
.++|.|.. +|+...-.+..++|+++|-.-+... |.+++.-+|+ +|+ | .+++.....||.++||.+...|
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPR-k------~~~~~d~~~TL~e~gL~p~~~L 75 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPR-R------DLTQLDPNFTLLELKLYPQETL 75 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCC-C------CCcCCCCCCcHHHcCCCCCcEE
Confidence 45666665 5666677899999999999999875 8888888997 453 1 1221122468999999887777
Q ss_pred EE
Q 006021 84 RM 85 (664)
Q Consensus 84 mL 85 (664)
.+
T Consensus 76 ~V 77 (80)
T cd01771 76 IL 77 (80)
T ss_pred EE
Confidence 65
No 116
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=45.99 E-value=10 Score=34.33 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=11.7
Q ss_pred HHHHHHhhhhccCCcc
Q 006021 231 KTLLHELAHMVYSEHD 246 (664)
Q Consensus 231 ~tllHELaH~v~g~Hd 246 (664)
.|+.|||-|+.-.+||
T Consensus 109 ~~~~HEiGH~lGl~Hd 124 (124)
T PF13582_consen 109 DTFAHEIGHNLGLNHD 124 (124)
T ss_dssp THHHHHHHHHTT----
T ss_pred eEeeehhhHhcCCCCC
Confidence 8999999999999996
No 117
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=44.98 E-value=34 Score=34.12 Aligned_cols=39 Identities=10% Similarity=0.275 Sum_probs=33.1
Q ss_pred EECC----EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEee
Q 006021 13 IWRG----KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (664)
Q Consensus 13 k~~G----k~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~ 51 (664)
.+.| .++.+.+++++||.+|...|...+++++..|-+|+
T Consensus 7 s~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~ 49 (162)
T PF13019_consen 7 SFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLT 49 (162)
T ss_pred cCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEE
Confidence 4566 57788999999999999999999999999984343
No 118
>PRK06437 hypothetical protein; Provisional
Probab=44.83 E-value=86 Score=26.37 Aligned_cols=59 Identities=15% Similarity=0.371 Sum_probs=40.2
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006021 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.+|+|. +++.-+++++...||++|=.++ |++++.-.+.+ .|..+. .+..|++|-+|.+
T Consensus 3 ~~~~v~---g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~v---Ng~iv~------------~~~~L~dgD~Vei 60 (67)
T PRK06437 3 AMIRVK---GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIV---NGSPVL------------EDHNVKKEDDVLI 60 (67)
T ss_pred ceEEec---CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEE---CCEECC------------CceEcCCCCEEEE
Confidence 344444 6677788888899999987766 88887776665 564332 1224678888877
Q ss_pred e
Q 006021 86 M 86 (664)
Q Consensus 86 m 86 (664)
+
T Consensus 61 v 61 (67)
T PRK06437 61 L 61 (67)
T ss_pred E
Confidence 5
No 119
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=43.77 E-value=27 Score=35.72 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=24.6
Q ss_pred eEEEEEECC------EEEEEEeCCCCCHHHHHHHHHHHhCCCCC-CceEee
Q 006021 8 LKVSAIWRG------KKYVVEVNSGSPLKELGHELQKLTDVKAD-TMRFIV 51 (664)
Q Consensus 8 i~ItVk~~G------k~~~i~l~~d~TV~dLK~~Ie~lTgVPpe-~QKLL~ 51 (664)
.+|.|.|-+ +.|++-++.++||.||-.++....+++.+ .+||.+
T Consensus 19 k~~kv~w~~~~~~~~~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl 69 (213)
T PF14533_consen 19 KQFKVTWLNDGLKEEQEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRL 69 (213)
T ss_dssp --EEEEEE-TTS-EE-EEEE--BTT-BHHHHHHHHHTT----TT----EEE
T ss_pred eEEEEEEECCCCcceeEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEE
Confidence 456677753 34667889999999999999999999776 677753
No 120
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=43.56 E-value=14 Score=37.49 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhccCCcchh
Q 006021 229 IKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 229 I~~tllHELaH~v~g~Hd~~ 248 (664)
...||.|||+|+.-.+||..
T Consensus 145 ~~~~~AHElGH~lG~~HD~~ 164 (220)
T cd04272 145 GVYTMTHELAHLLGAPHDGS 164 (220)
T ss_pred cHHHHHHHHHHHhCCCCCCC
Confidence 36999999999999999976
No 121
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=43.39 E-value=13 Score=35.97 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhhcc
Q 006021 227 ESIKKTLLHELAHMVY 242 (664)
Q Consensus 227 ~~I~~tllHELaH~v~ 242 (664)
.+=..||+|||+|..-
T Consensus 94 ~Sk~~TLiHE~SHf~~ 109 (148)
T PF14521_consen 94 DSKEGTLIHEWSHFTA 109 (148)
T ss_dssp T-HHHHHHHHHHHSCC
T ss_pred CchHHHHHHhhhhhhh
Confidence 4568999999999543
No 122
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=42.39 E-value=14 Score=45.35 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.2
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 006021 224 RKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~ 244 (664)
..|..|..++.||++|+++|+
T Consensus 278 ~~~~~i~~VIaHElaHqWfGN 298 (863)
T TIGR02414 278 ADYERIESVIAHEYFHNWTGN 298 (863)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 346789999999999999995
No 123
>PRK14015 pepN aminopeptidase N; Provisional
Probab=42.24 E-value=14 Score=45.45 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=17.3
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 006021 225 KYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 225 p~~~I~~tllHELaH~v~g~ 244 (664)
.+..+..+++|||||+++|+
T Consensus 292 ~~~~i~~vIaHElaHqWFGN 311 (875)
T PRK14015 292 DYERIESVIAHEYFHNWTGN 311 (875)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 45678899999999999995
No 124
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=41.75 E-value=16 Score=39.78 Aligned_cols=36 Identities=36% Similarity=0.356 Sum_probs=24.9
Q ss_pred cchHHHHHHHHHHhhhhc--cCCcchhHHHHHHHHHHH
Q 006021 224 RKYESIKKTLLHELAHMV--YSEHDANFYGLDKQLNQE 259 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v--~g~Hd~~F~~L~~~L~~E 259 (664)
.|.-.+=-|+||||||-. -.+--++|++.+.-++.+
T Consensus 191 ~p~~~~P~T~~HElAHq~G~a~E~EANFiayLac~~s~ 228 (318)
T PF12725_consen 191 LPPYSLPFTICHELAHQLGFASEDEANFIAYLACINSP 228 (318)
T ss_pred CCcccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 344556679999999987 335667888877655443
No 125
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=40.91 E-value=19 Score=35.44 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhhhhccCCcchh
Q 006021 226 YESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 226 ~~~I~~tllHELaH~v~g~Hd~~ 248 (664)
+.....|+.|||.|+.-.+||..
T Consensus 128 ~~~~a~~~AHElGH~lG~~HD~~ 150 (194)
T cd04269 128 LLLFAVTMAHELGHNLGMEHDDG 150 (194)
T ss_pred hHHHHHHHHHHHHhhcCCCcCCC
Confidence 44567899999999999999987
No 126
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=40.38 E-value=17 Score=44.41 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhhhhccC
Q 006021 226 YESIKKTLLHELAHMVYS 243 (664)
Q Consensus 226 ~~~I~~tllHELaH~v~g 243 (664)
...+..+++|||||.++|
T Consensus 284 ~~~~~~viaHElAHqWFG 301 (831)
T TIGR02412 284 KENRAGVILHEMAHMWFG 301 (831)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 456889999999999999
No 127
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=39.74 E-value=16 Score=35.99 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhccCCcchh
Q 006021 229 IKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 229 I~~tllHELaH~v~g~Hd~~ 248 (664)
-..|++|||.|..-.+||..
T Consensus 111 ~~~~~aHElGH~lGa~Hd~~ 130 (173)
T PF13574_consen 111 GIDTFAHELGHQLGAPHDFD 130 (173)
T ss_dssp HHHHHHHHHHHHHT---SSS
T ss_pred eeeeehhhhHhhcCCCCCCC
Confidence 67789999999999999988
No 128
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=38.74 E-value=17 Score=42.93 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=14.2
Q ss_pred HHHHHHHHhhhhccCC
Q 006021 229 IKKTLLHELAHMVYSE 244 (664)
Q Consensus 229 I~~tllHELaH~v~g~ 244 (664)
...+++|||||.++|+
T Consensus 279 ~~~viaHElAHqWfGN 294 (601)
T TIGR02411 279 NVDVIAHELAHSWSGN 294 (601)
T ss_pred hhhhHHHHHHhhccCc
Confidence 4689999999999994
No 129
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=38.59 E-value=16 Score=36.01 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhccCCcchh
Q 006021 227 ESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 227 ~~I~~tllHELaH~v~g~Hd~~ 248 (664)
.....|+.|||.|+.-..||..
T Consensus 131 ~~~~~~~aHElGH~lG~~HD~~ 152 (192)
T cd04267 131 LLTALTMAHELGHNLGAEHDGG 152 (192)
T ss_pred eeehhhhhhhHHhhcCCcCCCC
Confidence 4556799999999999999986
No 130
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=38.36 E-value=1.4e+02 Score=26.05 Aligned_cols=68 Identities=22% Similarity=0.339 Sum_probs=45.7
Q ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCC-CCceEe--eccCCCCCCCCCCCcccccccccccccCCCce
Q 006021 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKA-DTMRFI--VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (664)
Q Consensus 7 ~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPp-e~QKLL--~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~K 82 (664)
..+|.|.. +|+.....++.+.||.+|.+-|....+-+. ..-.|+ +|+ | .+.+. ..||.++||.+..-
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~-k------~l~~~--~~Tl~eagL~~s~v 74 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPV-K------ELSDE--SLTLKEANLLNAVI 74 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCC-c------ccCCC--CCcHHHCCCcCcEE
Confidence 45666665 467788899999999999999998765432 334555 442 2 22233 36899999986544
Q ss_pred E
Q 006021 83 I 83 (664)
Q Consensus 83 I 83 (664)
+
T Consensus 75 ~ 75 (79)
T cd01770 75 V 75 (79)
T ss_pred E
Confidence 4
No 131
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=37.86 E-value=63 Score=28.66 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=34.3
Q ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006021 10 VSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 10 ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
|+|++. =+..|.++...+..+|...|.+.+..+++.-+|=|.
T Consensus 1 ~~Vh~~-fTVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 1 VTVQCA-FTVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred CEEEEE-EEEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 456654 233357899999999999999999999999999884
No 132
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=37.34 E-value=54 Score=32.64 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=33.7
Q ss_pred CCCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 006021 4 LGSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKA 44 (664)
Q Consensus 4 ~~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPp 44 (664)
.++.+.|+++.||+.++++++++.|+.++=... .+||+..
T Consensus 3 ~~~~~~i~~~vNG~~~~~~~~~~~~Ll~~LR~~-gltgtK~ 42 (159)
T PRK09908 3 HSETITIECTINGMPFQLHAAPGTPLSELLREQ-GLLSVKQ 42 (159)
T ss_pred CCCceeEEEEECCEEEEEecCCCCcHHHHHHHc-CCCCCCC
Confidence 345678999999999999999999999887775 8888763
No 133
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=36.31 E-value=47 Score=36.79 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHhhhhc-cCCcchhHHHHHHHHHHHHHHhhhhc
Q 006021 225 KYESIKKTLLHELAHMV-YSEHDANFYGLDKQLNQEAVALDWTK 267 (664)
Q Consensus 225 p~~~I~~tllHELaH~v-~g~Hd~~F~~L~~~L~~E~~~l~~~~ 267 (664)
|-.++..++.|||||-+ +-+-|..|-+-+.....+.-...|..
T Consensus 161 ~~~~LA~LIfHELaHq~~Yv~~dt~FNEsfAtfVe~~G~~~wl~ 204 (337)
T PF10023_consen 161 PDGELARLIFHELAHQTLYVKGDTAFNESFATFVEREGARRWLA 204 (337)
T ss_pred CchHHHHHHHHHHhhceeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 44689999999999987 66888899998888887777777753
No 134
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=36.16 E-value=1.7e+02 Score=24.69 Aligned_cols=58 Identities=12% Similarity=0.261 Sum_probs=37.5
Q ss_pred EEEEECCE--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 10 VSAIWRGK--KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 10 ItVk~~Gk--~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
++|+.+|+ ...++++.+.||.+|-.+| +++++.--+.+ .|.... .+..|++|-+|.++
T Consensus 5 m~v~vng~~~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~v---Ng~iv~------------~~~~l~~gD~Veii 64 (70)
T PRK08364 5 IRVKVIGRGIEKEIEWRKGMKVADILRAV----GFNTESAIAKV---NGKVAL------------EDDPVKDGDYVEVI 64 (70)
T ss_pred EEEEEeccccceEEEcCCCCcHHHHHHHc----CCCCccEEEEE---CCEECC------------CCcCcCCCCEEEEE
Confidence 66777777 6678888999999998777 77765522223 443221 12236677777765
No 135
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=35.98 E-value=19 Score=34.02 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhcc
Q 006021 228 SIKKTLLHELAHMVY 242 (664)
Q Consensus 228 ~I~~tllHELaH~v~ 242 (664)
-++.||.|||+|.+.
T Consensus 78 GC~~TL~HEL~H~WQ 92 (141)
T PHA02456 78 GCRDTLAHELNHAWQ 92 (141)
T ss_pred chHHHHHHHHHHHHh
Confidence 478999999999874
No 136
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=35.53 E-value=26 Score=37.85 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=17.5
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 006021 225 KYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 225 p~~~I~~tllHELaH~v~g~ 244 (664)
....+..+++|||||.++|+
T Consensus 291 ~~~~~~~~iahElahqWfGn 310 (390)
T PF01433_consen 291 DKQEIASLIAHELAHQWFGN 310 (390)
T ss_dssp HHHHHHHHHHHHHHTTTBTT
T ss_pred hhhhhHHHHHHHHHHHHhcc
Confidence 35689999999999999985
No 137
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=35.30 E-value=22 Score=34.69 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=16.9
Q ss_pred CCccchHHHHHHHHHHhhhhc
Q 006021 221 KGFRKYESIKKTLLHELAHMV 241 (664)
Q Consensus 221 ~~Flp~~~I~~tllHELaH~v 241 (664)
..|.||-.-+.++.|||+|-|
T Consensus 127 ~~f~~~~~~lDVvaHEltHGV 147 (150)
T PF01447_consen 127 QIFKPFASSLDVVAHELTHGV 147 (150)
T ss_dssp SSBS-GGG-HHHHHHHHHHHH
T ss_pred cccccCccccceeeecccccc
Confidence 369999999999999999965
No 138
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=35.17 E-value=69 Score=28.87 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=33.6
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006021 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 16 Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
.++|+|.++..+|=.+.|+.|+.++||++..-.-+..
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~ 56 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNV 56 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEe
Confidence 4689999999999999999999999999988877763
No 139
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=35.14 E-value=23 Score=43.69 Aligned_cols=28 Identities=18% Similarity=0.399 Sum_probs=21.5
Q ss_pred ccchHHHHHHHHHHhhhhccCCc-chhHH
Q 006021 223 FRKYESIKKTLLHELAHMVYSEH-DANFY 250 (664)
Q Consensus 223 Flp~~~I~~tllHELaH~v~g~H-d~~F~ 250 (664)
=..+..|..+++|||||.++|+= ..++|
T Consensus 318 ~~~k~~va~vIaHElAHQWFGNLVTm~wW 346 (882)
T KOG1046|consen 318 SSNKQRVAEVIAHELAHQWFGNLVTMKWW 346 (882)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHhhh
Confidence 34478899999999999999963 33444
No 140
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=35.01 E-value=26 Score=32.05 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHhhhhc
Q 006021 226 YESIKKTLLHELAHMV 241 (664)
Q Consensus 226 ~~~I~~tllHELaH~v 241 (664)
-+.|+.|++||+||..
T Consensus 70 ~~~I~~tlvhEiah~f 85 (97)
T PF06262_consen 70 AELIRDTLVHEIAHHF 85 (97)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3679999999999964
No 141
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=34.36 E-value=66 Score=28.28 Aligned_cols=36 Identities=19% Similarity=0.345 Sum_probs=33.1
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006021 17 KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 17 k~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
++|+|.++.++|=.+.|.+|+.+++|.+..-..+..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~ 50 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLIT 50 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEc
Confidence 689999999999999999999999999988887764
No 142
>PRK08453 fliD flagellar capping protein; Validated
Probab=33.85 E-value=53 Score=39.50 Aligned_cols=32 Identities=16% Similarity=0.414 Sum_probs=28.7
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHH
Q 006021 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQK 38 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~ 38 (664)
...|++.++|++|+|+++...|+.+|...|=.
T Consensus 128 ~~~~~~~~~G~~~sIdi~~gtTL~~L~~~INd 159 (673)
T PRK08453 128 DTTLKFYTQGKDYAIDIKAGMTLGDVAQSITD 159 (673)
T ss_pred CceEEEEECCEEEEEEeCCCCcHHHHHHHhcC
Confidence 35688899999999999999999999999963
No 143
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=33.31 E-value=22 Score=39.59 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhhhc--cCCcchh
Q 006021 228 SIKKTLLHELAHMV--YSEHDAN 248 (664)
Q Consensus 228 ~I~~tllHELaH~v--~g~Hd~~ 248 (664)
+-..|+||||+|+. ++|+-.+
T Consensus 296 Dqatt~LHE~TH~~~V~~pgt~D 318 (359)
T PF02102_consen 296 DQATTTLHEMTHAPAVYSPGTDD 318 (359)
T ss_dssp -HHHHHHHHHHT-TTTSSS--B-
T ss_pred CccchhhhhhhccccccCCCccc
Confidence 46689999999995 5555443
No 144
>CHL00030 rpl23 ribosomal protein L23
Probab=33.24 E-value=69 Score=29.14 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=33.7
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006021 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 16 Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
.+.|+|.++.++|=.+.|.+|+.++||.+..-..+..
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 4689999999999999999999999999988887764
No 145
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=33.16 E-value=20 Score=31.38 Aligned_cols=15 Identities=47% Similarity=0.552 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhhccC
Q 006021 229 IKKTLLHELAHMVYS 243 (664)
Q Consensus 229 I~~tllHELaH~v~g 243 (664)
=...|.|||+|.+.-
T Consensus 61 ~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 61 GRALLAHELAHVVQQ 75 (79)
T ss_pred cchhHhHHHHHHHhh
Confidence 356899999998753
No 146
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=33.05 E-value=1.5e+02 Score=24.22 Aligned_cols=59 Identities=12% Similarity=0.190 Sum_probs=38.1
Q ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 11 SAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 11 tVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+|+++|+.++ ++...||.+|=.++ ++++++-.+-+ .|...... .+.+.-|++|-+|-++
T Consensus 2 ~i~vNG~~~~--~~~~~tl~~lL~~l----~~~~~~vav~v---Ng~iv~r~--------~~~~~~l~~gD~vei~ 60 (66)
T PRK05659 2 NIQLNGEPRE--LPDGESVAALLARE----GLAGRRVAVEV---NGEIVPRS--------QHASTALREGDVVEIV 60 (66)
T ss_pred EEEECCeEEE--cCCCCCHHHHHHhc----CCCCCeEEEEE---CCeEeCHH--------HcCcccCCCCCEEEEE
Confidence 6899999775 45678988887664 88887776655 45322211 1223346788888765
No 147
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=33.04 E-value=66 Score=38.82 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=35.7
Q ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEee
Q 006021 13 IWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (664)
Q Consensus 13 k~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~ 51 (664)
.-+...|++-++++.|+..|+..|+..||||...|-||+
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~ 359 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLF 359 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeee
Confidence 446777888899999999999999999999999999998
No 148
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=33.03 E-value=28 Score=35.94 Aligned_cols=34 Identities=35% Similarity=0.339 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHH
Q 006021 229 IKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVA 262 (664)
Q Consensus 229 I~~tllHELaH~v~g~Hd~~F~~L~~~L~~E~~~ 262 (664)
+.-.|+||++|.+++.=+......-.+.+.+|+.
T Consensus 101 ~~fil~HE~~Hv~~~h~~~~~~~~~~~eE~~AD~ 134 (206)
T PF10463_consen 101 IAFILLHELAHVVLGHEGDSSPSQSIQEEKEADS 134 (206)
T ss_pred HHHHHHHHHHHHHHcCccccccchhHHHHHhhhH
Confidence 4457899999988764444355555555555543
No 149
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=32.05 E-value=43 Score=38.13 Aligned_cols=68 Identities=18% Similarity=0.134 Sum_probs=40.2
Q ss_pred HhhcCeeeccccccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccC
Q 006021 174 MNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYS 243 (664)
Q Consensus 174 M~~~~w~V~~L~E~~P~~~~~~s~~~lLGlN~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~g 243 (664)
++..||--..+...--.-..+.|..-+.|+-.|+.=+|.=-|--. ..=+.=++|..+++|||.|-.|+
T Consensus 227 a~s~gfp~~k~~vi~~s~rs~hsNAyfyG~~~~KRIvIyDtLl~~--~~~~~~eel~AVl~HELGHW~~~ 294 (428)
T KOG2719|consen 227 ADSVGFPLSKYRVIDGSKRSSHSNAYFYGLCKNKRIVIYDTLLLE--EEHLNNEELVAVLAHELGHWKLN 294 (428)
T ss_pred HHhcCCCceEEEEEecCCCCCCCCeeeeeccccceEEEehhhhhh--hhccccHHHHHHHHHHhhHHHHh
Confidence 334566655666655211224455779999887665553222200 00034589999999999996654
No 150
>PF08919 F_actin_bind: F-actin binding; InterPro: IPR015015 The F-actin binding domain forms a compact bundle of four antiparallel alpha-helices, which are arranged in a left-handed topology. Binding of F-actin to the F-actin binding domain may result in cytoplasmic retention and subcellular distribution of the protein, as well as possible inhibition of protein function []. ; GO: 0004715 non-membrane spanning protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1ZZP_A 2KK1_A.
Probab=31.73 E-value=60 Score=30.44 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=54.3
Q ss_pred hhhhHhhhHHHHHHHHHHHhc----CChhHHHHHHHHHHHHHHHHhc--CCCccccchhcccChhHHHhhcChhhHHHHH
Q 006021 547 QDTVTVVCSRLQKAIEMLRAE----VSPLESTTVLQTLCKIIRNVIE--HPDETKYKRLRKANPIIQRSVANYKAAMEIL 620 (664)
Q Consensus 547 ~e~v~~~~~~L~~ai~~i~~~----n~~~~~~~al~tL~Kil~NIi~--~P~e~KyRrIR~sN~~F~~kV~~~~Ga~e~L 620 (664)
+++|...++-|+.+|..+..+ ..--++...++.|+.+|.+.++ =|--.|| .|++.|..++.-..-|
T Consensus 7 k~~Ile~~~~L~~~l~~l~~~~~~~~~~~qL~D~~~~l~~~C~~yaD~~~~p~~KF--------~FREllsrLE~~~rqL 78 (110)
T PF08919_consen 7 KESILELAELLENALSNLKSSSISMAQWSQLSDKLQQLHSSCSGYADSIIQPHAKF--------AFRELLSRLESQSRQL 78 (110)
T ss_dssp HHHHHHHHHHHHHHCCCTTTC------HHHHHHHHHHHHHHHHHHGGG-S-CCCHH--------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCcCcchhh--------hHHHHHHHHHHHHHHH
Confidence 456667777788888777666 2235667788889999999987 3455677 5999999999999999
Q ss_pred HHcCCcc
Q 006021 621 FLVGFNE 627 (664)
Q Consensus 621 ~a~GF~e 627 (664)
..+|=.-
T Consensus 79 r~~~s~~ 85 (110)
T PF08919_consen 79 RSCGSSN 85 (110)
T ss_dssp CHSSSSS
T ss_pred HhccCCC
Confidence 8877543
No 151
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=31.27 E-value=52 Score=29.45 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=32.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006021 17 KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 17 k~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
+.|+|.++.++|=.++|..|+.++||++..-..+..
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~ 56 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNY 56 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEe
Confidence 579999999999999999999999999988877764
No 152
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=30.79 E-value=75 Score=28.39 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=33.6
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006021 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 16 Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
.++|+|.++.++|=.+.|.+|+.++||.+..-..+..
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~ 57 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLIT 57 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEc
Confidence 3689999999999999999999999999988887764
No 153
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=30.67 E-value=36 Score=33.79 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=19.1
Q ss_pred cchHHHHHHHHHHhhhhccCCcchh
Q 006021 224 RKYESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~Hd~~ 248 (664)
..+-..-.+|.|||+|+.-.+||..
T Consensus 126 ~~~~~~a~~~AHelGH~lGm~HD~~ 150 (199)
T PF01421_consen 126 RSGLSFAVIIAHELGHNLGMPHDGD 150 (199)
T ss_dssp SSHHHHHHHHHHHHHHHTT---TTT
T ss_pred chhHHHHHHHHHHHHHhcCCCCCCC
Confidence 4567788999999999999999998
No 154
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=29.22 E-value=1.7e+02 Score=24.00 Aligned_cols=60 Identities=18% Similarity=0.252 Sum_probs=36.8
Q ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006021 10 VSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 10 ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
++|+-+|+.+.+ ...||.+|-.++ +++++.-.+-+ .+..+.. ..+.+..|++|-+|-++-
T Consensus 1 m~i~~Ng~~~~~---~~~tl~~Ll~~l----~~~~~~vavav---N~~iv~~--------~~~~~~~L~dgD~Ieiv~ 60 (65)
T PRK06488 1 MKLFVNGETLQT---EATTLALLLAEL----DYEGNWLATAV---NGELVHK--------EARAQFVLHEGDRIEILS 60 (65)
T ss_pred CEEEECCeEEEc---CcCcHHHHHHHc----CCCCCeEEEEE---CCEEcCH--------HHcCccccCCCCEEEEEE
Confidence 368889999888 346999988776 66664433333 3432210 113345577888887753
No 155
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=29.15 E-value=1.8e+02 Score=29.07 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=49.0
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEeccchhhhh
Q 006021 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGVSEDEVD 94 (664)
Q Consensus 16 Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmGs~~~eI~ 94 (664)
.+.|+|.++.++|=.+++..|+.++||.+..-..+..+.|-.... .+..-....--.=+.|..|.+|-+++....+-+
T Consensus 22 ~N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~K~KR~g-~~~G~~~~~KKAiVtL~~g~~I~~f~~~~~~~~ 99 (158)
T PRK12280 22 KNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLG-RFPGFTNSYKKAYVTLAEGYSINLFPEESEKEQ 99 (158)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCCcccccC-CcccccCCcEEEEEECCCCCEeeccCCcchhcc
Confidence 367999999999999999999999999998888775321110000 000000001011135678999988776654443
No 156
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=28.95 E-value=2.8e+02 Score=24.54 Aligned_cols=74 Identities=12% Similarity=0.211 Sum_probs=49.3
Q ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEee--ccCCCCCCCCCC--CcccccccccccccCCCc
Q 006021 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV--PQNKGSKLLSPF--SDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 7 ~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~--pk~KG~~Lk~p~--sD~~~~ltL~~~glk~G~ 81 (664)
.++|.|.. +|+...-.+..+.||++|..-|... +..|+.-.|+. |+ | ..... .......||.++||.+..
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPr-r---~~~~~~~~~~~~~~TL~eaGL~~s~ 78 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPR-R---VLPCLPSEGDPPPPTLLEAGLSNSE 78 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCC-c---cccccccccCcCCCCHHHcCCCCcc
Confidence 56666664 5666677899999999999999754 55668888873 42 1 11111 011124689999998776
Q ss_pred eEEE
Q 006021 82 SIRM 85 (664)
Q Consensus 82 KImL 85 (664)
.+++
T Consensus 79 ~L~V 82 (85)
T cd01774 79 VLFV 82 (85)
T ss_pred EEEE
Confidence 6654
No 157
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=28.32 E-value=40 Score=35.60 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 006021 225 KYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 225 p~~~I~~tllHELaH~v~g~ 244 (664)
+-+.+..+|+||+-||+++.
T Consensus 56 ~~~~~~~~l~HevlH~~~~H 75 (292)
T PF13203_consen 56 SPEERVGLLLHEVLHCLLRH 75 (292)
T ss_pred CHHHHHHHHHHHHHHHHccc
Confidence 45778899999999999774
No 158
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=27.21 E-value=33 Score=32.06 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHhhhhccCCcch
Q 006021 224 RKYESIKKTLLHELAHMVYSEHDA 247 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~Hd~ 247 (664)
.+...+..|++|||-|..-..|..
T Consensus 100 ~~~~~~~~v~~HEiGHaLGL~H~~ 123 (154)
T PF00413_consen 100 DSGNDLQSVAIHEIGHALGLDHSN 123 (154)
T ss_dssp SSSEEHHHHHHHHHHHHTTBESSS
T ss_pred hhhhhhhhhhhhccccccCcCcCC
Confidence 344578999999999999888873
No 159
>PF15639 Tox-MPTase3: Metallopeptidase toxin 3
Probab=26.94 E-value=26 Score=33.71 Aligned_cols=13 Identities=54% Similarity=0.726 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhh
Q 006021 228 SIKKTLLHELAHM 240 (664)
Q Consensus 228 ~I~~tllHELaH~ 240 (664)
.|-.|+||||.|-
T Consensus 99 ~v~~TlLHEliHw 111 (135)
T PF15639_consen 99 LVGSTLLHELIHW 111 (135)
T ss_pred EeehHHHHHHHHh
Confidence 3678999999994
No 160
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=26.76 E-value=82 Score=26.38 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=27.1
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 006021 15 RGKKYVVEVNSGSPLKELGHELQKLTDVK 43 (664)
Q Consensus 15 ~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVP 43 (664)
.|+..++.++.++|+.+|=..|++..|+.
T Consensus 5 D~~~~~~~v~~~~t~~~l~~~v~~~l~l~ 33 (80)
T PF09379_consen 5 DGTTKTFEVDPKTTGQDLLEQVCDKLGLK 33 (80)
T ss_dssp SEEEEEEEEETTSBHHHHHHHHHHHHTTS
T ss_pred CCCcEEEEEcCCCcHHHHHHHHHHHcCCC
Confidence 57888999999999999999999999996
No 161
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=26.40 E-value=16 Score=36.71 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhccCCcchh
Q 006021 229 IKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 229 I~~tllHELaH~v~g~Hd~~ 248 (664)
...|+.|||.|+.-.+||..
T Consensus 140 ~a~~~aHElGH~LG~~HD~~ 159 (207)
T cd04273 140 SAFTIAHELGHVLGMPHDGD 159 (207)
T ss_pred eEEeeeeechhhcCCCCCCC
Confidence 35799999999999999987
No 162
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=25.84 E-value=49 Score=34.29 Aligned_cols=40 Identities=30% Similarity=0.324 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHhhhhccCCcc-----hhHH-HHHHHHHHHHHHhh
Q 006021 225 KYESIKKTLLHELAHMVYSEHD-----ANFY-GLDKQLNQEAVALD 264 (664)
Q Consensus 225 p~~~I~~tllHELaH~v~g~Hd-----~~F~-~L~~~L~~E~~~l~ 264 (664)
+-+.-+=||.|||.|.+-..+. ..+- ....+++.||..+-
T Consensus 68 ~~~r~rFtlAHELGH~llH~~~~~~~~~~~~~~~~~~~E~~AN~FA 113 (213)
T COG2856 68 SLERKRFTLAHELGHALLHTDLNTRFDAEPTLQQDRKIEAEANAFA 113 (213)
T ss_pred CHHHHHHHHHHHHhHHHhccccchhhhcccccchhHHHHHHHHHHH
Confidence 5567788999999999955443 2222 46677888776654
No 163
>PF12140 DUF3588: Protein of unknown function (DUF3588); InterPro: IPR021987 This family of proteins is found in eukaryotes. Proteins in this family are typically between 129 and 866 amino acids in length, and the family is found in association with PF02820 from PFAM. The exact function of this family is not known.
Probab=25.70 E-value=1.8e+02 Score=27.68 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=27.7
Q ss_pred CCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHH
Q 006021 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKL 39 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~l 39 (664)
++...|++++.|++|++.|+.-.|+.++-.-|+.+
T Consensus 67 ~~~~~i~a~~~gk~~~~~lp~v~s~~~v~~Fl~~l 101 (118)
T PF12140_consen 67 GEGEVISAKFDGKTHTVKLPTVNSASYVLRFLEKL 101 (118)
T ss_pred CceeEEEEEEcCeEEEEEecccccHHHHHHHHHHH
Confidence 34678999999999999999888877666555544
No 164
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=24.95 E-value=36 Score=32.22 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhccCCcchh
Q 006021 227 ESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 227 ~~I~~tllHELaH~v~g~Hd~~ 248 (664)
.....|++|||.|..-..|+..
T Consensus 94 ~~~~~~~~HElGH~LGl~H~~~ 115 (167)
T cd00203 94 KEGAQTIAHELGHALGFYHDHD 115 (167)
T ss_pred ccchhhHHHHHHHHhCCCccCc
Confidence 4578999999999999999865
No 165
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=24.73 E-value=1.6e+02 Score=31.96 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=55.6
Q ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEe--eccCCCCCCCCCCCcccccccccccccCCCceE
Q 006021 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFI--VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 7 ~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL--~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
.-+|+|.+ .|++...+|++..|+..+...++--+++.+.==+|+ ||+ ..|.+....-+|+.++|.|...|
T Consensus 210 ~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR-------~tf~edD~~KpLq~L~L~Psa~l 282 (290)
T KOG2689|consen 210 QCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPR-------VTFTEDDELKPLQELDLVPSAVL 282 (290)
T ss_pred ceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCc-------eecccccccccHHHhccccchhe
Confidence 56899999 999999999999999999999999999988666666 332 22333333456888888887766
Q ss_pred EE
Q 006021 84 RM 85 (664)
Q Consensus 84 mL 85 (664)
.|
T Consensus 283 il 284 (290)
T KOG2689|consen 283 IL 284 (290)
T ss_pred ec
Confidence 55
No 166
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=24.51 E-value=1.5e+02 Score=27.12 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=29.3
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 006021 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKAD 45 (664)
Q Consensus 14 ~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe 45 (664)
-+|.+.-+.++-+.|..+|..+|.+.+++...
T Consensus 20 ~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~ 51 (97)
T cd06410 20 VGGETRIVSVDRSISFKELVSKLSELFGAGVV 51 (97)
T ss_pred cCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc
Confidence 47788889999999999999999999999876
No 167
>PF14891 Peptidase_M91: Effector protein
Probab=24.43 E-value=32 Score=34.00 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=15.0
Q ss_pred HHHHHHHhhhhccCCcchh
Q 006021 230 KKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 230 ~~tllHELaH~v~g~Hd~~ 248 (664)
.-+|.|||+|..|.-++..
T Consensus 104 ~v~L~HEL~HA~~~~~Gt~ 122 (174)
T PF14891_consen 104 FVVLYHELIHAYDYMNGTM 122 (174)
T ss_pred HHHHHHHHHHHHHHHCCCC
Confidence 4689999999887766654
No 168
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=24.38 E-value=45 Score=36.72 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.1
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 006021 224 RKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~ 244 (664)
++-+++...++|||+|..+|+
T Consensus 185 ~~~ee~~yIilHEl~Hlk~gD 205 (337)
T COG4219 185 LTDEELKYIILHELSHLKRGD 205 (337)
T ss_pred cCHHhhhhhHhHHHhhhhccc
Confidence 556889999999999998875
No 169
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=24.09 E-value=2e+02 Score=26.57 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=33.6
Q ss_pred EEEEEECCEEE-EEEeCCCCCHHHHHHHHHHHhCCCC-CCceEee
Q 006021 9 KVSAIWRGKKY-VVEVNSGSPLKELGHELQKLTDVKA-DTMRFIV 51 (664)
Q Consensus 9 ~ItVk~~Gk~~-~i~l~~d~TV~dLK~~Ie~lTgVPp-e~QKLL~ 51 (664)
-|.|-....++ +++.+.++||+++-..|.+.+.+++ .+-.|..
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l 48 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSL 48 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEE
Confidence 35666666665 6899999999999999999999988 4445544
No 170
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=23.03 E-value=62 Score=32.55 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=16.0
Q ss_pred CccchHHHHHHHHHHhhhh
Q 006021 222 GFRKYESIKKTLLHELAHM 240 (664)
Q Consensus 222 ~Flp~~~I~~tllHELaH~ 240 (664)
.+.....+..||.|||.|.
T Consensus 64 ~~~~~~~l~~~l~HELIHa 82 (173)
T PF09768_consen 64 RIRSQGHLEDTLTHELIHA 82 (173)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3566788999999999994
No 171
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=22.52 E-value=61 Score=30.70 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhhccCCcchh
Q 006021 227 ESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 227 ~~I~~tllHELaH~v~g~Hd~~ 248 (664)
.....|++|||-|..-..|...
T Consensus 92 ~~~~~~~~HEiGHaLGL~H~~~ 113 (165)
T cd04268 92 ARLRNTAEHELGHALGLRHNFA 113 (165)
T ss_pred HHHHHHHHHHHHHHhcccccCc
Confidence 5689999999999998888765
No 172
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=22.47 E-value=1.3e+02 Score=31.39 Aligned_cols=37 Identities=27% Similarity=0.254 Sum_probs=29.7
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 006021 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVK 43 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVP 43 (664)
...|+++.+|+.++++++++.|+.++=.+-..+||++
T Consensus 49 ~~~i~~~VNG~~~~~~v~~~~tLLd~LR~~l~ltGtK 85 (217)
T PRK11433 49 ISPVTLKVNGKTEQLEVDTRTTLLDALREHLHLTGTK 85 (217)
T ss_pred CceEEEEECCEEEEEecCCCCcHHHHHHHhcCCCCCC
Confidence 4668899999999999999999887665544566665
No 173
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=22.40 E-value=2.9e+02 Score=22.91 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=38.9
Q ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006021 11 SAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 11 tVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+|+-+|+.+++. .+.||.+|=.++ +++++.-.+-+ .+..+.. ..+... |++|-+|-++
T Consensus 2 ~i~vNG~~~~~~--~~~tl~~ll~~l----~~~~~~vav~~---N~~iv~r--------~~~~~~-L~~gD~ieIv 59 (65)
T PRK05863 2 IVVVNEEQVEVD--EQTTVAALLDSL----GFPEKGIAVAV---DWSVLPR--------SDWATK-LRDGARLEVV 59 (65)
T ss_pred EEEECCEEEEcC--CCCcHHHHHHHc----CCCCCcEEEEE---CCcCcCh--------hHhhhh-cCCCCEEEEE
Confidence 678899987764 678988887665 88888777766 4543321 112333 7888888765
No 174
>PRK09672 phage exclusion protein Lit; Provisional
Probab=21.84 E-value=76 Score=34.66 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhhccCCcchhHHHHHHHHHHHHHHhh
Q 006021 229 IKKTLLHELAHMVYSEHDANFYGLDKQLNQEAVALD 264 (664)
Q Consensus 229 I~~tllHELaH~v~g~Hd~~F~~L~~~L~~E~~~l~ 264 (664)
+--.++||++|++++.=.-.=.+.-.+.+.||+..-
T Consensus 165 ~a~i~~HEiaHv~~~h~~~~~~e~s~~eE~eaDs~A 200 (305)
T PRK09672 165 LAWILLHEIAHVEFQHSSLESNEDSIQEEKEADSYA 200 (305)
T ss_pred HHHHHHHHHHHHHhccccccCchHHHHHHHHHHHHH
Confidence 445789999999987443233334455555665443
No 175
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=21.81 E-value=61 Score=30.90 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHhhhhccCCcchh
Q 006021 226 YESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 226 ~~~I~~tllHELaH~v~g~Hd~~ 248 (664)
-..+..|++|||-|..-..|...
T Consensus 101 ~~~~~~~~~HEiGHaLGL~H~~~ 123 (156)
T cd04279 101 AENLQAIALHELGHALGLWHHSD 123 (156)
T ss_pred chHHHHHHHHHhhhhhcCCCCCC
Confidence 35789999999999998888755
No 176
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=21.73 E-value=68 Score=35.61 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=38.7
Q ss_pred CCCCeeEEEEEECCEEEE---EEeCCCCCHHHHHHHHHHHhCCC--CCCceEeeccCCCCCCC
Q 006021 3 DLGSMLKVSAIWRGKKYV---VEVNSGSPLKELGHELQKLTDVK--ADTMRFIVPQNKGSKLL 60 (664)
Q Consensus 3 ~~~~~i~ItVk~~Gk~~~---i~l~~d~TV~dLK~~Ie~lTgVP--pe~QKLL~pk~KG~~Lk 60 (664)
.++..+++-||-..++|. |+++..-||++||..++..-==. +..|||+| .|++|.
T Consensus 5 ~~e~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliY---sgklll 64 (391)
T KOG4583|consen 5 IFEFPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIY---SGKLLL 64 (391)
T ss_pred cCCcceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHh---hccccc
Confidence 344567888888888885 44556679999999998653222 25699999 676544
No 177
>PRK12765 flagellar capping protein; Provisional
Probab=21.30 E-value=1.6e+02 Score=35.03 Aligned_cols=35 Identities=14% Similarity=0.421 Sum_probs=30.6
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHh
Q 006021 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLT 40 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lT 40 (664)
..++|+|.++|++|+|+++...|+.+|..+|-...
T Consensus 131 gt~tlti~~~g~~~tI~i~~~~TL~dl~~aIN~a~ 165 (595)
T PRK12765 131 GETDLTIFSNGKEYTITVDKSTTYRDLADKINEAS 165 (595)
T ss_pred CceEEEEEeCCEEEEEEECCCCCHHHHHHHHhcCc
Confidence 35688999999999999999999999999996543
No 178
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=21.30 E-value=32 Score=37.60 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=0.0
Q ss_pred eeEEEEEECC-EEEEEEeC-----CCCCHHHHHHHHHH----------HhCCCCCCce-----Eeec
Q 006021 7 MLKVSAIWRG-KKYVVEVN-----SGSPLKELGHELQK----------LTDVKADTMR-----FIVP 52 (664)
Q Consensus 7 ~i~ItVk~~G-k~~~i~l~-----~d~TV~dLK~~Ie~----------lTgVPpe~QK-----LL~p 52 (664)
+|+|+++--. -..+|.|+ .+.||.|+|..+++ .++||.+..| ||+.
T Consensus 78 sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~ 144 (309)
T PF12754_consen 78 SITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYK 144 (309)
T ss_dssp -------------------------------------------------------------------
T ss_pred eEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheec
Confidence 4555544333 33445553 25789999999999 9999999999 9984
No 179
>PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents zinc-dependent peptidases belonging to the MEROPS peptidase family M54, more commonly known as the archaemetzincins. The family has a wide taxonomic distribution, being found in archaea, bacteria and eukaryotes. Two human homologues have been characterised []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 3LMC_A 2XHQ_A 2X7M_A.
Probab=20.87 E-value=66 Score=32.93 Aligned_cols=49 Identities=24% Similarity=0.312 Sum_probs=26.4
Q ss_pred ccccccCCccEEEEEe-ecC--CCCCccchHHHHHHHHHHhhhhccCCcchh
Q 006021 200 VLGFNKNHGEEISLRL-RTD--DLKGFRKYESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 200 lLGlN~N~G~~I~LRL-Rt~--d~~~Flp~~~I~~tllHELaH~v~g~Hd~~ 248 (664)
+.|+-...|..-.+-+ |.. ..+.=+=.+.+.++++|||.|+.--+|=.+
T Consensus 113 VFG~A~~~~~~aVvS~~~~~fy~~~~~l~~~R~~Kea~HElGH~~GL~HC~~ 164 (194)
T PF07998_consen 113 VFGLARPGGGVAVVSTSRNEFYGEDEELFLERVCKEAVHELGHLFGLDHCEN 164 (194)
T ss_dssp BSEEEECCSSEEEEEGGCGGGGTSSHHHHHHHHHHHHHHHHHHHTT----SS
T ss_pred EEEEeecCCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHHHcCCcCCCC
Confidence 6666555444333333 331 111112258899999999999998888544
No 180
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=20.68 E-value=1.5e+02 Score=23.55 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=18.0
Q ss_pred CeeEEEEEECCEEEEEEeCCC
Q 006021 6 SMLKVSAIWRGKKYVVEVNSG 26 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d 26 (664)
..+++.|.|+|..+.|.++.+
T Consensus 8 ~~l~F~~~~rg~~l~v~i~~~ 28 (54)
T PF03633_consen 8 SSLSFRLRYRGHWLEVEITHE 28 (54)
T ss_dssp SEEEEEEEETTEEEEEEEETT
T ss_pred CEeEEEEEECCEEEEEEEECC
Confidence 368999999999999998654
No 181
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=20.52 E-value=1.9e+02 Score=25.97 Aligned_cols=31 Identities=13% Similarity=0.139 Sum_probs=29.3
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 006021 15 RGKKYVVEVNSGSPLKELGHELQKLTDVKAD 45 (664)
Q Consensus 15 ~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe 45 (664)
+|.+|-|.+.++..+.+|+++|.+.+|+...
T Consensus 9 ~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~ 39 (86)
T cd06409 9 KGRVHRFRLRPSESLEELRTLISQRLGDDDF 39 (86)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCccc
Confidence 7899999999999999999999999999875
No 182
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=20.36 E-value=50 Score=34.41 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHhhhhccCCcc
Q 006021 226 YESIKKTLLHELAHMVYSEHD 246 (664)
Q Consensus 226 ~~~I~~tllHELaH~v~g~Hd 246 (664)
...++.||+||+.|....-.+
T Consensus 89 ~~~~~~~l~HE~GHAlI~~~~ 109 (220)
T PF14247_consen 89 IGNVLFTLYHELGHALIDDLD 109 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999998776544
Done!