BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006022
         (664 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2D5U|A Chain A, Solution Structure Of The N-Terminal Portion Of The Pub
           Domain Of Mouse Peptide:n-Glycanase
          Length = 124

 Score = 33.1 bits (74), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 12/73 (16%)

Query: 571 LESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVV 630
           LE++ +L T      N++ +P + KY+ +R  N      +   + A+E LF +GF E   
Sbjct: 34  LEASKLLLTYAD---NILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE--- 87

Query: 631 LDEIGKAETYLVL 643
                  ET+L+ 
Sbjct: 88  ------GETHLIF 94


>pdb|2CCQ|A Chain A, The Pub Domain Functions As A P97 Binding Module In Human
           Peptide N-Glycanase
          Length = 99

 Score = 33.1 bits (74), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 12/75 (16%)

Query: 571 LESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVV 630
           LE++ +L T      N++ +P++ KY+ +R  N      +   + A+E LF +GF E   
Sbjct: 19  LEASKLLLTYAD---NILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE--- 72

Query: 631 LDEIGKAETYLVLKR 645
                  ET+L+  +
Sbjct: 73  ------GETHLIFPK 81


>pdb|2HPJ|A Chain A, Crystal Structure Of The Pub Domain Of Mouse Pngase
          Length = 99

 Score = 32.0 bits (71), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 571 LESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNE 627
           LE++ +L T      N++ +P + KY+ +R  N      +   + A+E LF +GF E
Sbjct: 18  LEASKLLLTYAD---NILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE 71


>pdb|2HPL|A Chain A, Crystal Structure Of The Mouse P97PNGASE COMPLEX
          Length = 100

 Score = 32.0 bits (71), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 571 LESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNE 627
           LE++ +L T      N++ +P + KY+ +R  N      +   + A+E LF +GF E
Sbjct: 18  LEASKLLLTYAD---NILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEE 71


>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
           Coli At 1.86 Angstroms Resolution: Comparison With The
           Enzyme From Human Erythrocytes
 pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
           Coli At 1.86 Angstroms Resolution: Comparison With The
           Enzyme From Human Erythrocytes
 pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
 pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
          Length = 450

 Score = 28.9 bits (63), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 11/73 (15%)

Query: 154 ASEALKIMHMLAADPGIIAIMNKHRWRVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISL 213
           A++  + +HM   D G    +NK  W   I +  A +  +  S + VLG N         
Sbjct: 56  AAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNN-------- 107

Query: 214 RLRTDDLKGFRKY 226
               D +KGF ++
Sbjct: 108 ---VDVIKGFARF 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.132    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,474,290
Number of Sequences: 62578
Number of extensions: 876893
Number of successful extensions: 1779
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1769
Number of HSP's gapped (non-prelim): 17
length of query: 664
length of database: 14,973,337
effective HSP length: 105
effective length of query: 559
effective length of database: 8,402,647
effective search space: 4697079673
effective search space used: 4697079673
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)