Query 006022
Match_columns 664
No_of_seqs 411 out of 814
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 13:53:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d5u_A N-glycanase 1; pngase, 99.8 3E-20 1E-24 171.5 8.6 96 555-660 16-112 (124)
2 2ccq_A P97, peptide N-glycanas 99.8 4E-20 1.4E-24 164.6 8.6 92 558-659 4-96 (99)
3 3shq_A UBLCP1; phosphatase, hy 99.6 9.2E-16 3.1E-20 161.6 9.4 84 5-95 3-86 (320)
4 1v5t_A 8430435I17RIK protein; 99.5 1.1E-14 3.9E-19 126.0 7.4 80 5-91 5-85 (90)
5 1wgg_A Ubiquitin carboxyl-term 99.5 3.6E-14 1.2E-18 124.7 8.5 76 5-91 5-81 (96)
6 1v86_A DNA segment, CHR 7, way 99.5 1.4E-13 4.9E-18 120.5 8.7 77 5-92 15-91 (95)
7 1wxv_A BAG-family molecular ch 99.4 1.1E-12 3.6E-17 113.4 7.9 79 4-91 4-87 (92)
8 2dzm_A FAS-associated factor 1 99.3 2.4E-12 8.2E-17 114.6 7.7 75 6-89 8-82 (100)
9 2kd0_A LRR repeats and ubiquit 99.3 1.3E-11 4.5E-16 105.8 9.6 74 6-89 11-84 (85)
10 2bwf_A Ubiquitin-like protein 99.2 6E-11 2.1E-15 97.9 9.2 73 7-89 4-76 (77)
11 3m63_B Ubiquitin domain-contai 99.1 3.1E-11 1.1E-15 106.9 4.5 74 6-89 27-100 (101)
12 2lxa_A Ubiquitin-like protein 99.1 4E-11 1.4E-15 104.0 4.8 75 7-91 1-80 (87)
13 2hj8_A Interferon-induced 17 k 99.1 2.7E-10 9.1E-15 97.8 8.9 76 4-89 1-77 (88)
14 3phx_B Ubiquitin-like protein 99.1 2.4E-10 8.1E-15 95.4 8.4 73 5-87 2-75 (79)
15 4eew_A Large proline-rich prot 99.1 3.1E-10 1.1E-14 96.6 8.4 71 5-86 15-86 (88)
16 4a20_A Ubiquitin-like protein 99.1 1.7E-10 5.9E-15 102.2 6.5 75 6-90 18-97 (98)
17 3m62_B UV excision repair prot 99.1 1.6E-10 5.3E-15 103.1 6.3 75 7-91 1-76 (106)
18 2dzi_A Ubiquitin-like protein 99.0 4.6E-10 1.6E-14 93.4 8.6 74 6-89 6-80 (81)
19 3v6c_B Ubiquitin; structural g 99.0 4.3E-10 1.5E-14 96.8 8.5 72 6-87 16-88 (91)
20 2kk8_A Uncharacterized protein 99.0 3.7E-10 1.3E-14 96.7 7.1 73 7-89 10-84 (84)
21 2wyq_A HHR23A, UV excision rep 99.0 8.6E-10 2.9E-14 92.9 8.9 75 6-90 4-82 (85)
22 4hcn_B Polyubiquitin, ubiquiti 99.0 5E-10 1.7E-14 98.0 7.3 73 5-87 20-93 (98)
23 4fbj_B NEDD8; effector-HOST ta 99.0 5.4E-10 1.9E-14 95.9 7.3 71 8-88 1-72 (88)
24 2klc_A Ubiquilin-1; ubiquitin- 99.0 7.9E-10 2.7E-14 97.7 8.5 74 6-89 24-97 (101)
25 1yqb_A Ubiquilin 3; structural 99.0 7E-10 2.4E-14 97.9 8.2 79 1-89 16-94 (100)
26 1wx8_A Riken cDNA 4931431F19; 99.0 5.8E-10 2E-14 96.7 7.2 75 5-89 15-89 (96)
27 3dbh_I NEDD8; cell cycle, acti 99.0 1E-09 3.4E-14 92.9 8.3 72 6-87 11-83 (88)
28 3mtn_B UBA80, ubcep1, ubiquiti 99.0 1.1E-09 3.7E-14 91.8 8.3 72 6-87 2-74 (85)
29 1uel_A HHR23B, UV excision rep 99.0 1.6E-09 5.3E-14 94.3 9.0 73 8-90 1-77 (95)
30 1ndd_A NEDD8, protein (ubiquit 99.0 1.3E-09 4.4E-14 89.1 7.8 70 8-87 1-71 (76)
31 4dwf_A HLA-B-associated transc 99.0 1.6E-09 5.3E-14 92.7 8.5 74 6-90 4-78 (90)
32 2kan_A Uncharacterized protein 99.0 1.4E-09 4.7E-14 95.0 8.1 76 5-89 13-88 (94)
33 3n3k_B Ubiquitin; hydrolase, p 99.0 8.8E-10 3E-14 92.5 6.6 72 6-87 2-74 (85)
34 1v5o_A 1700011N24RIK protein; 98.9 1.4E-09 4.9E-14 96.0 7.9 74 6-88 6-84 (102)
35 1ttn_A DC-UBP, dendritic cell- 98.9 1.9E-09 6.4E-14 95.9 8.6 75 6-90 22-97 (106)
36 3a9j_A Ubiquitin; protein comp 98.9 2.3E-09 7.8E-14 87.6 8.2 71 8-88 1-72 (76)
37 1wh3_A 59 kDa 2'-5'-oligoadeny 98.9 2.9E-09 9.8E-14 90.2 8.8 73 6-88 6-79 (87)
38 2l7r_A Ubiquitin-like protein 98.9 1.2E-09 4E-14 95.0 6.5 71 6-87 18-88 (93)
39 1j8c_A Ubiquitin-like protein 98.9 3E-09 1E-13 97.8 9.5 76 6-91 31-106 (125)
40 1wgd_A Homocysteine-responsive 98.9 2.2E-09 7.5E-14 92.8 7.1 73 6-88 6-85 (93)
41 1wx7_A Ubiquilin 3; ubiquitin- 98.9 4E-09 1.4E-13 93.5 8.8 75 5-89 15-89 (106)
42 3k9o_B Ubiquitin, UBB+1; E2-25 98.9 3.5E-09 1.2E-13 91.4 8.2 71 8-88 2-73 (96)
43 3vdz_A Ubiquitin-40S ribosomal 98.9 3E-09 1E-13 95.4 7.9 71 7-87 35-106 (111)
44 1wy8_A NP95-like ring finger p 98.9 5.1E-09 1.8E-13 89.1 8.9 73 5-87 5-80 (89)
45 1yx5_B Ubiquitin; proteasome, 98.9 5.2E-09 1.8E-13 91.1 8.2 72 8-89 1-73 (98)
46 2faz_A Ubiquitin-like containi 98.8 5.9E-09 2E-13 86.5 7.8 72 7-88 2-76 (78)
47 1sif_A Ubiquitin; hydrophobic 98.8 4.6E-09 1.6E-13 90.1 7.2 69 10-88 13-81 (88)
48 1v6e_A Cytoskeleton-associated 98.8 7.8E-09 2.7E-13 90.1 8.6 78 7-90 7-89 (95)
49 3u30_A Ubiquitin, linear DI-ub 98.8 6.6E-09 2.3E-13 99.1 8.5 74 6-89 19-93 (172)
50 1t0y_A Tubulin folding cofacto 98.8 1.1E-08 3.6E-13 93.5 9.4 85 3-90 2-88 (122)
51 1we6_A Splicing factor, putati 98.8 8.4E-09 2.9E-13 92.3 8.2 72 6-87 26-102 (111)
52 1wju_A NEDD8 ultimate buster-1 98.8 5.5E-09 1.9E-13 93.1 6.7 73 7-89 15-92 (100)
53 2ojr_A Ubiquitin; lanthide-bin 98.8 1.2E-08 3.9E-13 91.5 8.8 73 6-88 34-107 (111)
54 1x1m_A Ubiquitin-like protein 98.8 6E-09 2.1E-13 92.8 6.8 74 7-90 12-101 (107)
55 3rt3_B Ubiquitin-like protein 98.8 1.1E-08 3.9E-13 95.9 8.4 73 8-89 3-77 (159)
56 1uh6_A Ubiquitin-like 5; beta- 98.8 8.3E-09 2.8E-13 92.0 6.9 72 5-86 26-98 (100)
57 3plu_A Ubiquitin-like modifier 98.8 1.3E-08 4.4E-13 89.7 7.6 71 5-85 19-90 (93)
58 3b1l_X E3 ubiquitin-protein li 98.2 1.2E-09 4.2E-14 90.1 0.0 69 9-87 2-71 (76)
59 1we7_A SF3A1 protein; structur 98.7 2.7E-08 9.3E-13 89.6 8.3 72 6-87 24-106 (115)
60 2kjr_A CG11242; UBL, ubiquitin 98.7 3.5E-08 1.2E-12 86.8 8.6 75 5-86 13-93 (95)
61 2kj6_A Tubulin folding cofacto 98.7 5.5E-08 1.9E-12 85.9 9.3 79 6-89 13-96 (97)
62 2kdi_A Ubiquitin, vacuolar pro 98.7 2.7E-08 9.3E-13 89.8 7.4 74 7-90 9-83 (114)
63 3b08_A Polyubiquitin-C, ubiqui 98.6 4.7E-08 1.6E-12 90.0 7.9 73 8-90 1-74 (152)
64 3q3f_A Ribonuclease/ubiquitin 98.6 6.4E-08 2.2E-12 95.2 8.0 72 7-88 105-177 (189)
65 1wia_A Hypothetical ubiquitin- 98.6 9.1E-08 3.1E-12 82.8 7.8 73 5-89 5-78 (95)
66 4b6w_A Tubulin-specific chaper 98.6 9.9E-08 3.4E-12 82.4 7.8 76 7-89 2-84 (86)
67 2kzr_A Ubiquitin thioesterase 98.6 1.1E-07 3.8E-12 81.2 8.1 77 8-89 1-78 (86)
68 3l0w_B Monoubiquitinated proli 98.6 1.3E-07 4.4E-12 91.0 8.9 70 9-88 2-72 (169)
69 3u5e_m 60S ribosomal protein L 98.6 8.2E-09 2.8E-13 94.7 0.0 71 9-89 2-73 (128)
70 1oqy_A HHR23A, UV excision rep 98.5 6.5E-08 2.2E-12 103.8 6.9 75 6-90 6-84 (368)
71 3rt3_B Ubiquitin-like protein 98.5 1.6E-07 5.5E-12 88.0 8.7 73 6-88 80-153 (159)
72 2daf_A FLJ35834 protein; hypot 98.5 9.6E-08 3.3E-12 87.4 6.6 73 7-89 15-89 (118)
73 2uyz_B Small ubiquitin-related 98.5 1.2E-07 4.2E-12 78.8 6.7 71 7-87 3-74 (79)
74 1v2y_A 3300001G02RIK protein; 98.5 4.4E-08 1.5E-12 88.0 3.8 74 5-87 5-94 (105)
75 2kdb_A Homocysteine-responsive 98.5 1E-07 3.6E-12 84.4 6.1 71 6-86 22-99 (99)
76 2fnj_B Transcription elongatio 98.5 1.9E-07 6.4E-12 85.6 7.7 73 7-89 2-81 (118)
77 3b08_A Polyubiquitin-C, ubiqui 98.5 2.2E-07 7.5E-12 85.5 8.1 72 7-88 76-148 (152)
78 3ai5_A Yeast enhanced green fl 98.5 2.5E-07 8.6E-12 97.1 8.8 73 5-87 231-304 (307)
79 1wyw_B Ubiquitin-like protein 98.4 3.1E-07 1.1E-11 80.2 6.9 72 6-87 20-92 (97)
80 4ajy_B Transcription elongatio 98.4 4.8E-07 1.6E-11 82.9 8.1 72 7-88 2-80 (118)
81 3u30_A Ubiquitin, linear DI-ub 98.4 4E-07 1.4E-11 86.8 7.8 71 7-87 96-167 (172)
82 3u5c_f 40S ribosomal protein S 98.4 3.1E-08 1.1E-12 94.2 0.0 70 9-88 2-72 (152)
83 1wjn_A Tubulin-folding protein 98.4 1E-06 3.5E-11 76.9 8.2 82 5-89 7-93 (97)
84 2dzj_A Synaptic glycoprotein S 98.3 1.4E-06 4.7E-11 75.4 8.0 71 7-85 10-85 (88)
85 2gow_A HCG-1 protein, ubiquiti 98.3 1.3E-06 4.4E-11 80.7 6.8 68 6-83 16-92 (125)
86 1wgh_A Ubiquitin-like 3, HCG-1 98.2 2.3E-06 7.9E-11 78.0 8.3 72 5-86 14-96 (116)
87 4dbg_A Ranbp-type and C3HC4-ty 98.2 3.6E-06 1.2E-10 75.6 8.9 70 8-87 25-98 (105)
88 1wf9_A NPL4 family protein; be 98.1 6.4E-06 2.2E-10 73.4 8.5 77 7-89 7-95 (107)
89 1se9_A Ubiquitin family; ubiqu 97.8 3E-05 1E-09 71.7 6.6 66 6-81 15-89 (126)
90 2xzm_9 RPS31E; ribosome, trans 97.4 2.3E-05 7.8E-10 77.1 0.0 49 9-60 2-51 (189)
91 2pjh_A Protein NPL4, nuclear p 97.3 0.00028 9.5E-09 60.0 5.2 75 5-85 2-77 (80)
92 4efo_A Serine/threonine-protei 97.2 0.0007 2.4E-08 59.7 6.8 67 15-89 22-89 (94)
93 3a4r_A Nfatc2-interacting prot 96.9 0.0035 1.2E-07 52.8 8.6 73 5-87 5-79 (79)
94 2io1_B Small ubiquitin-related 96.8 0.0023 7.9E-08 55.9 7.2 72 5-86 5-77 (94)
95 1wm3_A Ubiquitin-like protein 96.7 0.0046 1.6E-07 51.0 7.8 69 8-86 2-71 (72)
96 2io0_B Small ubiquitin-related 96.6 0.0055 1.9E-07 53.3 8.0 72 5-86 3-75 (91)
97 1wz0_A Ubiquitin-like protein 96.3 0.017 5.9E-07 51.4 9.3 71 6-86 23-94 (104)
98 2k8h_A Small ubiquitin protein 96.3 0.011 3.9E-07 53.2 8.2 73 6-88 25-98 (110)
99 2eke_C Ubiquitin-like protein 96.2 0.012 4.2E-07 52.7 7.8 71 6-86 30-100 (106)
100 2d07_B Ubiquitin-like protein 96.1 0.018 6E-07 50.1 7.9 71 6-86 16-87 (93)
101 3pge_A SUMO-modified prolifera 93.2 0.2 6.7E-06 49.7 7.8 72 5-86 27-98 (200)
102 3kyd_D Small ubiquitin-related 92.4 0.42 1.5E-05 43.4 8.2 71 6-86 39-110 (115)
103 3tix_A Ubiquitin-like protein 91.9 0.3 1E-05 48.4 7.0 73 5-87 55-127 (207)
104 2bps_A YUKD protein; ubiquitin 88.9 0.62 2.1E-05 39.9 5.6 73 6-85 3-80 (81)
105 3qx1_A FAS-associated factor 1 87.3 2.2 7.5E-05 35.8 8.0 73 5-85 5-80 (84)
106 1oey_A P67-PHOX, neutrophil cy 86.7 1.9 6.5E-05 37.1 7.3 46 6-52 4-49 (83)
107 2jxx_A Nfatc2-interacting prot 84.5 4.6 0.00016 35.5 8.9 73 5-87 23-97 (97)
108 1vd2_A Protein kinase C, IOTA 81.5 3 0.0001 36.3 6.3 44 3-46 2-45 (89)
109 4a3p_A Ubiquitin carboxyl-term 80.9 4.6 0.00016 39.8 8.4 72 8-85 128-205 (217)
110 2al3_A TUG long isoform; TUG U 80.8 2.3 7.9E-05 37.1 5.4 72 8-89 10-82 (90)
111 2dzk_A UBX domain-containing p 79.6 9.7 0.00033 33.7 9.3 76 6-86 12-88 (109)
112 1ip9_A BEM1 protein; ubiquitin 79.4 5 0.00017 34.7 6.9 74 6-87 11-84 (85)
113 2kc2_A Talin-1, F1; FERM, adhe 78.9 2 6.9E-05 39.7 4.7 32 14-45 19-50 (128)
114 3uf8_A Ubiquitin-like protein 78.3 4.8 0.00016 39.5 7.6 51 6-59 20-70 (209)
115 3v7o_A Minor nucleoprotein VP3 78.1 0.44 1.5E-05 47.8 0.0 71 6-86 20-90 (227)
116 3cqb_A Probable protease HTPX 76.5 1.2 4E-05 39.3 2.3 22 224-245 78-99 (107)
117 3jyu_A Ubiquitin carboxyl-term 75.6 11 0.00036 37.6 9.3 72 8-85 140-217 (231)
118 2l76_A Nfatc2-interacting prot 75.5 8.3 0.00028 34.0 7.4 71 5-85 19-89 (95)
119 3ix6_A TS, tsase, thymidylate 75.2 0.59 2E-05 50.1 0.0 73 6-88 20-92 (360)
120 1wj4_A KIAA0794 protein; UBX d 74.8 8.5 0.00029 34.9 7.6 76 5-86 41-117 (124)
121 4aw6_A CAAX prenyl protease 1 69.0 2.1 7E-05 47.5 2.5 23 224-246 324-346 (482)
122 4eut_A Serine/threonine-protei 69.0 12 0.0004 38.9 8.1 44 9-52 314-357 (396)
123 1wj6_A KIAA0049 protein, RSGI 67.0 20 0.00068 31.9 7.8 43 3-45 10-54 (101)
124 2bkf_A Zinc-finger protein NBR 64.7 17 0.00058 31.5 6.8 41 3-43 2-44 (87)
125 4da1_A Protein phosphatase 1K, 64.2 1.4 4.8E-05 46.8 0.0 71 6-86 29-99 (389)
126 2kvr_A Ubiquitin carboxyl-term 58.0 7.1 0.00024 35.9 3.5 33 19-51 58-90 (130)
127 3dte_A IRRE protein; radiotole 57.6 24 0.00082 36.7 7.9 60 170-247 54-114 (301)
128 2ddf_A ADAM 17; hydrolase; HET 54.1 6.3 0.00022 39.2 2.7 26 224-249 177-202 (257)
129 1qua_A Acutolysin-C, hemorrhag 53.6 5.4 0.00018 38.3 2.0 20 229-248 135-154 (197)
130 1bud_A Protein (acutolysin A); 53.3 5.9 0.0002 38.0 2.3 21 228-248 132-152 (197)
131 3b8z_A Protein adamts-5; alpha 52.5 5.8 0.0002 38.6 2.1 21 228-248 140-160 (217)
132 1yp1_A FII; FII hydrolase; 1.9 51.8 5.7 0.0002 38.3 1.9 21 229-249 135-155 (202)
133 1kuf_A Atrolysin E, metallopro 51.8 6 0.00021 38.2 2.1 21 228-248 137-157 (203)
134 2w15_A Zinc metalloproteinase 51.6 6.5 0.00022 37.8 2.3 21 228-248 135-155 (202)
135 1atl_A Atrolysin C; metalloend 50.9 6.8 0.00023 37.8 2.3 20 229-248 136-155 (202)
136 2v4b_A Adamts-1; zymogen, prot 49.6 6.7 0.00023 40.1 2.1 21 228-248 142-162 (300)
137 4dd8_A Disintegrin and metallo 49.4 8.9 0.00031 37.1 2.9 23 226-248 130-152 (208)
138 2i47_A ADAM 17; TACE-inhibitor 48.2 8.8 0.0003 39.0 2.7 26 224-249 183-208 (288)
139 3ivf_A Talin-1; FERM domain, c 47.8 40 0.0014 35.2 7.8 70 7-83 3-79 (371)
140 2rjq_A Adamts-5; metalloprotea 47.5 7.4 0.00025 41.1 2.1 21 228-248 142-162 (378)
141 3ebh_A PFA-M1, M1 family amino 46.5 8.1 0.00028 45.9 2.4 20 225-244 291-310 (889)
142 2rjp_A Adamts-4; metalloprotea 46.4 8 0.00027 39.9 2.1 21 228-248 142-162 (316)
143 2gtq_A Aminopeptidase N; alani 44.2 9.2 0.00031 45.2 2.4 20 225-244 283-302 (867)
144 3qa8_A MGC80376 protein; kinas 43.6 17 0.00059 41.8 4.5 39 14-52 319-357 (676)
145 1r55_A ADAM 33; metalloproteas 43.1 10 0.00034 36.9 2.1 21 228-248 135-155 (214)
146 2daj_A KIAA0977 protein, COBL- 43.0 63 0.0022 28.1 6.7 67 6-79 9-76 (91)
147 1z5h_A Tricorn protease intera 42.8 10 0.00035 44.1 2.5 23 222-244 252-274 (780)
148 3c37_A Peptidase, M48 family; 42.5 9.9 0.00034 38.1 2.0 25 225-249 96-120 (253)
149 3goe_A DNA repair protein RAD6 41.4 76 0.0026 27.2 6.9 69 8-86 10-80 (82)
150 3b34_A Aminopeptidase N; prote 41.3 11 0.00037 44.8 2.4 21 224-244 307-327 (891)
151 1s3s_G P47 protein; AAA ATPase 40.6 60 0.002 29.3 6.8 71 6-83 51-123 (127)
152 3r8s_T 50S ribosomal protein L 40.4 38 0.0013 29.5 5.1 36 17-52 28-63 (93)
153 4axq_A Archaemetzincin; metall 40.3 15 0.0005 35.0 2.7 21 226-246 111-131 (163)
154 1g12_A Peptidyl-Lys metalloend 40.0 9.1 0.00031 36.3 1.3 15 227-241 109-123 (167)
155 2ero_A VAP-1, vascular apoptos 40.0 13 0.00044 40.3 2.6 22 227-248 144-165 (427)
156 2dw0_A Catrocollastatin; apopt 39.9 13 0.00044 40.2 2.6 22 227-248 135-156 (419)
157 2xdt_A Endoplasmic reticulum a 39.4 12 0.00041 44.2 2.4 20 225-244 298-317 (897)
158 2ejq_A Hypothetical protein TT 39.2 12 0.00042 34.4 1.9 34 208-241 65-101 (130)
159 2e3x_A Coagulation factor X-ac 39.1 14 0.00046 40.1 2.6 22 227-248 137-158 (427)
160 4fke_A Aminopeptidase N; zinc 38.2 13 0.00044 44.0 2.4 25 221-245 308-332 (909)
161 1n62_A Carbon monoxide dehydro 38.0 25 0.00086 33.5 4.0 35 8-42 4-38 (166)
162 2cr5_A Reproduction 8; UBX dom 37.7 1.3E+02 0.0046 26.1 8.4 72 6-86 22-96 (109)
163 1q1o_A Cell division control p 37.5 54 0.0018 28.9 5.7 37 7-43 5-49 (98)
164 3u9w_A Leukotriene A-4 hydrola 37.1 8.3 0.00029 43.4 0.5 18 228-245 286-303 (608)
165 1ffv_A CUTS, iron-sulfur prote 36.6 27 0.00093 33.2 4.0 35 8-42 4-38 (163)
166 3k7n_A K-like; SVMP, hydrolase 35.9 15 0.00052 39.5 2.3 22 227-248 137-158 (397)
167 2zjr_Q 50S ribosomal protein L 35.7 44 0.0015 29.2 4.8 34 19-52 25-58 (95)
168 3k7l_A Atragin; SVMP, metallop 35.1 16 0.00054 39.7 2.3 22 227-248 142-163 (422)
169 1rm6_C 4-hydroxybenzoyl-COA re 34.1 32 0.0011 32.5 4.0 35 8-42 3-37 (161)
170 1eb6_A Neutral protease II; me 34.0 13 0.00044 35.6 1.2 15 228-242 121-135 (177)
171 1t3q_A Quinoline 2-oxidoreduct 31.5 42 0.0014 31.7 4.4 29 7-35 9-37 (168)
172 3se6_A Endoplasmic reticulum a 31.3 21 0.00071 42.7 2.6 22 223-244 358-379 (967)
173 3tve_T 50S ribosomal protein L 30.4 47 0.0016 28.8 4.1 36 17-52 22-57 (92)
174 3hrd_D Nicotinate dehydrogenas 28.6 40 0.0014 32.0 3.6 27 8-34 4-30 (160)
175 1vq8_S 50S ribosomal protein L 28.6 53 0.0018 28.1 4.1 37 16-52 22-58 (85)
176 3e11_A Predicted zincin-like m 28.5 24 0.00081 31.7 1.9 16 226-241 87-102 (114)
177 3lmc_A Peptidase, zinc-depende 28.4 27 0.00093 34.7 2.5 22 226-247 140-161 (210)
178 1tyg_B YJBS; alpha beta barrel 28.4 82 0.0028 26.9 5.2 63 7-86 18-81 (87)
179 2xq0_A LTA-4 hydrolase, leukot 28.1 20 0.00068 40.6 1.7 17 228-244 294-310 (632)
180 3cia_A Cold-active aminopeptid 27.7 20 0.0007 40.2 1.7 17 228-244 293-309 (605)
181 2x7m_A Archaemetzincin; metall 27.5 29 0.00099 33.9 2.5 20 226-245 136-155 (195)
182 3g5c_A ADAM 22; alpha/beta fol 27.2 29 0.00099 38.7 2.7 21 228-248 133-153 (510)
183 2k5p_A THis protein, thiamine- 26.5 58 0.002 27.0 3.9 61 11-86 2-63 (78)
184 3qij_A Protein 4.1; cytoskelet 26.0 63 0.0022 32.8 4.8 42 3-44 13-55 (296)
185 3onh_A Ubiquitin-activating en 25.9 1.1E+02 0.0036 28.3 5.7 61 21-90 10-81 (127)
186 2nnz_A Hypothetical protein; b 24.4 38 0.0013 31.9 2.6 33 4-36 26-61 (153)
187 2kl0_A Putative thiamin biosyn 24.2 88 0.003 25.5 4.5 58 11-86 2-59 (73)
188 4fgm_A Aminopeptidase N family 23.6 34 0.0011 38.7 2.5 20 225-244 263-282 (597)
189 1ef1_A Moesin; membrane, FERM 23.3 1.2E+02 0.0041 30.2 6.3 38 7-44 1-38 (294)
190 2ylm_A Ubiquitin carboxyl-term 23.2 44 0.0015 37.2 3.3 30 20-49 39-68 (530)
191 1ryj_A Unknown; beta/alpha pro 21.9 3E+02 0.01 21.8 8.5 41 7-51 4-44 (70)
192 3j21_T 50S ribosomal protein L 21.6 90 0.0031 26.8 4.2 37 16-52 23-59 (86)
No 1
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=99.81 E-value=3e-20 Score=171.48 Aligned_cols=96 Identities=22% Similarity=0.344 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcCCccccccccc
Q 006022 555 SRLQKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEI 634 (664)
Q Consensus 555 ~~L~~ai~~i~~~n~~~~~~~al~tL~Kil~NIi~~P~e~KyRrIR~sN~~F~~kV~~~~Ga~e~L~a~GF~e~~~~d~~ 634 (664)
+.|++|+..|+. |..+++.+|++||.|||.||+.||+|+|||+||++|++|+++|++++||++||.++||++..
T Consensus 16 ~~l~~~l~~L~~-n~~~~~~~a~~tL~kil~NIl~~P~e~KyRkIRl~N~~f~~~V~~~~Ga~e~L~a~GF~~~~----- 89 (124)
T 2d5u_A 16 SSASPAVAELCQ-NTPETFLEASKLLLTYADNILRNPSDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGE----- 89 (124)
T ss_dssp SSCCHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHSSSCGGGSEEECCCHHHHHTTSSSTTHHHHHHHHTCBCCS-----
T ss_pred HHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHcCCCcccceeeecCCHHHHHHhcCCccHHHHHHHcccccCC-----
Confidence 467889999975 56789999999999999999999999999999999999999999999999999999998883
Q ss_pred CCcceEEEEcCC-CHHHHHHHHhhhhh
Q 006022 635 GKAETYLVLKRN-DLALLWLAKSSLET 660 (664)
Q Consensus 635 ~~~e~~LVl~~~-d~~~L~~ak~~Le~ 660 (664)
++||||.+ +...|..++..|-.
T Consensus 90 ----~~lvlp~~~~~~~l~~~~d~L~~ 112 (124)
T 2d5u_A 90 ----THLIFPKKASVEQLQKIRDLIAI 112 (124)
T ss_dssp ----SEEECCTTSCHHHHHHHHHHHHH
T ss_pred ----CeeecCCCCCHHHHHHHHHHHHH
Confidence 45999987 88888888777654
No 2
>2ccq_A P97, peptide N-glycanase homolog; glycoprotein; 1.6A {Homo sapiens} SCOP: d.314.1.1 PDB: 2hpl_A 2hpj_A 2cm0_A
Probab=99.81 E-value=4e-20 Score=164.64 Aligned_cols=92 Identities=22% Similarity=0.371 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHHHHHHhcCCCccccchhcccChhHHHhhcChhhHHHHHHHcCCcccccccccCCc
Q 006022 558 QKAIEMLRAEVSPLESTTVLQTLCKIIRNVIEHPDETKYKRLRKANPIIQRSVANYKAAMEILFLVGFNEDVVLDEIGKA 637 (664)
Q Consensus 558 ~~ai~~i~~~n~~~~~~~al~tL~Kil~NIi~~P~e~KyRrIR~sN~~F~~kV~~~~Ga~e~L~a~GF~e~~~~d~~~~~ 637 (664)
+.++..|. .|..+++.+|++||.||+.||+.||+|+|||+||++|++|+++|++++||++||.++||++..
T Consensus 4 ~~~l~~L~-~n~~~~~~~a~~tL~k~l~Nil~~P~e~KyR~Ir~~N~~f~~~v~~~~G~~e~L~a~GF~~~~-------- 74 (99)
T 2ccq_A 4 SPAVAELC-QNTPETFLEASKLLLTYADNILRNPNDEKYRSIRIGNTAFSTRLLPVRGAVECLFEMGFEEGE-------- 74 (99)
T ss_dssp SHHHHHHT-SSCHHHHHHHHHHHHHHHHHHHHCTTCGGGGEEETTCHHHHHHTTTSTTHHHHHHHHTCEECS--------
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHcCCCCcccceeecCCHHHHHHhcCCccHHHHHHHccceeCC--------
Confidence 46777775 456889999999999999999999999999999999999999999999999999999999873
Q ss_pred ceEEEEcCC-CHHHHHHHHhhhh
Q 006022 638 ETYLVLKRN-DLALLWLAKSSLE 659 (664)
Q Consensus 638 e~~LVl~~~-d~~~L~~ak~~Le 659 (664)
+.|+||.+ +...|..++..|-
T Consensus 75 -~~l~lp~~~~~~~l~~~~d~l~ 96 (99)
T 2ccq_A 75 -THLIFPKKASVEQLQKIRDLIA 96 (99)
T ss_dssp -SEEECCTTSCHHHHHHHHHHHH
T ss_pred -CeeecCCCCCHHHHHHHHHHHH
Confidence 34999887 8899988887764
No 3
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.60 E-value=9.2e-16 Score=161.63 Aligned_cols=84 Identities=19% Similarity=0.401 Sum_probs=68.7
Q ss_pred CCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
.++|+|+|+|+|++|+|++++++||++||++|+++|||||++||||+++.+|+.+++. .+|++++|++|++||
T Consensus 3 ~~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~-------~~L~~~~ik~g~~l~ 75 (320)
T 3shq_A 3 VKEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADN-------VKISALELKPNFKLM 75 (320)
T ss_dssp -CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTT-------SBTTSSCCC--CEEE
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCcc-------ccHHHcCCCCCCEEE
Confidence 4689999999999999999999999999999999999999999999654478766632 468889999999999
Q ss_pred EeccchhhhhH
Q 006022 85 MMGVSEDEVDK 95 (664)
Q Consensus 85 LmGs~~~eI~~ 95 (664)
||||++++|..
T Consensus 76 L~gs~~~~i~~ 86 (320)
T 3shq_A 76 MVGSTEADIED 86 (320)
T ss_dssp EECCCC-----
T ss_pred EEccchhhhcc
Confidence 99999998753
No 4
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.53 E-value=1.1e-14 Score=126.05 Aligned_cols=80 Identities=24% Similarity=0.388 Sum_probs=69.4
Q ss_pred CCeeEEEEEECCEEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAIWRGKKYVV-EVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~~i-~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
+.+|+|+|+|+|++|+| ++++++||.+||++|+++|||||++|||++++.+|+.|++ ..+|++++|++|.+|
T Consensus 5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D-------~~~L~~~~i~~g~~l 77 (90)
T 1v5t_A 5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEN-------DVKLGALKLKPNTKI 77 (90)
T ss_dssp CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCT-------TSBHHHHTCCTTEEE
T ss_pred CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCC-------CCCHHHcCCCCCCEE
Confidence 35689999999999999 9999999999999999999999999999932227876542 256889999999999
Q ss_pred EEeccchh
Q 006022 84 RMMGVSED 91 (664)
Q Consensus 84 mLmGs~~~ 91 (664)
||||++++
T Consensus 78 ~l~~~~~~ 85 (90)
T 1v5t_A 78 MMMGTRES 85 (90)
T ss_dssp EEECCCSS
T ss_pred EEEecCcc
Confidence 99999875
No 5
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=3.6e-14 Score=124.72 Aligned_cols=76 Identities=26% Similarity=0.445 Sum_probs=68.7
Q ss_pred CCeeEEEEEECCEEE-EEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAIWRGKKY-VVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~-~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
+.+|+|+|+|+|++| +|++++++||.+||++|+++||||+++||||+ +|+.|++ . +|++++|++|.+|
T Consensus 5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~---~Gk~L~D-------~-tL~~~~I~~g~~i 73 (96)
T 1wgg_A 5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMV---KGGTLKD-------D-DWGNIKMKNGMTV 73 (96)
T ss_dssp CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEE---TTEECCS-------S-CCCSCCCCSSCEE
T ss_pred CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCcCCCC-------C-CHHHCCCCCCCEE
Confidence 358999999999999 69999999999999999999999999999999 7876652 2 5788999999999
Q ss_pred EEeccchh
Q 006022 84 RMMGVSED 91 (664)
Q Consensus 84 mLmGs~~~ 91 (664)
+|||++.+
T Consensus 74 ~l~~~~~~ 81 (96)
T 1wgg_A 74 LMMGSADA 81 (96)
T ss_dssp ECCCCCCC
T ss_pred EEEecchh
Confidence 99999875
No 6
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=1.4e-13 Score=120.46 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=68.7
Q ss_pred CCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
.++|+|+|+|+|++|+|++++++||.+||++|++.||||+++|||++ +|+.| ++ .+|.+++|++|.+|+
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~---~Gk~L-dd-------~tL~~~~i~~g~~i~ 83 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMY---KGLVP-ED-------KTLREIKVTSGAKIM 83 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBS---SSBCC-SS-------SBHHHHCCCTTEEEE
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCeeC-Cc-------CcHHHCCCCCCCEEE
Confidence 35799999999999999999999999999999999999999999998 78755 21 268899999999999
Q ss_pred Eeccchhh
Q 006022 85 MMGVSEDE 92 (664)
Q Consensus 85 LmGs~~~e 92 (664)
|||+++++
T Consensus 84 lv~~~~~~ 91 (95)
T 1v86_A 84 VVGSTISG 91 (95)
T ss_dssp ECCSSCCC
T ss_pred EEeccccC
Confidence 99998654
No 7
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=1.1e-12 Score=113.37 Aligned_cols=79 Identities=20% Similarity=0.294 Sum_probs=69.4
Q ss_pred CCCeeEEEEEECCEEEEEEeCCC-----CCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccC
Q 006022 4 LGSMLKVSAIWRGKKYVVEVNSG-----SPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSII 78 (664)
Q Consensus 4 ~~~~i~ItVk~~Gk~~~i~l~~d-----~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk 78 (664)
++.+|.|+|+|+|++|+|+++++ .||.+||++|++.+|||+++|||++ +|+.|+++ ..+|.+++++
T Consensus 4 ~~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~---~Gk~L~D~------~~~L~~~~i~ 74 (92)
T 1wxv_A 4 GSSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIF---KGKSLKEM------ETPLSALGIQ 74 (92)
T ss_dssp CCSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEEECCS------SSBHHHHTCC
T ss_pred CCCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEE---CCeecCCC------cccHHHCCCC
Confidence 34579999999999999999996 9999999999999999999999999 78766532 2468899999
Q ss_pred CCceEEEeccchh
Q 006022 79 EGKSIRMMGVSED 91 (664)
Q Consensus 79 ~G~KImLmGs~~~ 91 (664)
+|.+|+|++++..
T Consensus 75 ~g~~i~l~~~~~~ 87 (92)
T 1wxv_A 75 DGCRVMLIGKKNS 87 (92)
T ss_dssp SSEEEEEESCCSC
T ss_pred CCCEEEEEecCCC
Confidence 9999999998754
No 8
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=2.4e-12 Score=114.65 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=64.6
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.++.|.|+|.|++|+|++++++||.+||++|+++|||||++|||++. |++++. | ..+|++++|++|.+|+|
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~--~~gkL~----D---~~tLs~~~I~~gstL~l 78 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGW--KTGDVE----D---STVLKSLHLPKNNSLYV 78 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECC--SSSCCC----T---TSBHHHHCCCSEEEEEE
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEcc--CCCCCC----C---cCCHHHcCCCCCCEEEE
Confidence 47999999999999999999999999999999999999999999963 455443 2 25688999999999999
Q ss_pred eccc
Q 006022 86 MGVS 89 (664)
Q Consensus 86 mGs~ 89 (664)
+-..
T Consensus 79 vl~~ 82 (100)
T 2dzm_A 79 LTPD 82 (100)
T ss_dssp CCSS
T ss_pred EecC
Confidence 7654
No 9
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.27 E-value=1.3e-11 Score=105.77 Aligned_cols=74 Identities=24% Similarity=0.426 Sum_probs=66.9
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.++.+.++|+|++++|++++++||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|+++++++|.+|+|
T Consensus 11 ~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-------~~tL~~~gi~~g~~l~l 80 (85)
T 2kd0_A 11 STIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIF---KGKVLVE-------TSTLKQSDVGSGAKLML 80 (85)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEE---TTEECCT-------TCBTTTTTCCTTEEEEE
T ss_pred CcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCeECCC-------cCCHHHCCCCCCCEEEE
Confidence 4788999999999999999999999999999999999999999999 7765542 25689999999999999
Q ss_pred eccc
Q 006022 86 MGVS 89 (664)
Q Consensus 86 mGs~ 89 (664)
++++
T Consensus 81 ~~s~ 84 (85)
T 2kd0_A 81 MASQ 84 (85)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 9986
No 10
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.19 E-value=6e-11 Score=97.89 Aligned_cols=73 Identities=18% Similarity=0.293 Sum_probs=65.4
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
.+.|.|+++|+++.++++++.||.+||.+|++.+|||+++|+|++ +|+.|.+ ..+|+++|+++|..|.|+
T Consensus 4 ~m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~L~d-------~~tL~~~~i~~g~~i~l~ 73 (77)
T 2bwf_A 4 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKILKD-------DQTVESYHIQDGHSVHLV 73 (77)
T ss_dssp EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEEEEE
T ss_pred EEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCeEcCC-------CCCHHHcCCCCCCEEEEE
Confidence 388999999999999999999999999999999999999999999 6765542 256899999999999999
Q ss_pred ccc
Q 006022 87 GVS 89 (664)
Q Consensus 87 Gs~ 89 (664)
+++
T Consensus 74 ~~~ 76 (77)
T 2bwf_A 74 KSQ 76 (77)
T ss_dssp ECC
T ss_pred EcC
Confidence 875
No 11
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.12 E-value=3.1e-11 Score=106.89 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=65.6
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
..|+|+|+|+|++++|++++++||.+||++|++.+|||+++|||++ +|+.|.+ ..+|+++++++|.+|.|
T Consensus 27 m~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~~gI~~g~tI~l 96 (101)
T 3m63_B 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIY---SGKILKD-------DQTVESYHIQDGHSVHL 96 (101)
T ss_dssp --CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEE---TTEECCT-------TSBTTTTTCCTTEEEEE
T ss_pred cEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEECCC-------cCcHHHCCCCCCCEEEE
Confidence 3688999999999999999999999999999999999999999999 7876653 25689999999999999
Q ss_pred eccc
Q 006022 86 MGVS 89 (664)
Q Consensus 86 mGs~ 89 (664)
+.+.
T Consensus 97 v~~~ 100 (101)
T 3m63_B 97 VKSQ 100 (101)
T ss_dssp CCCC
T ss_pred EeCC
Confidence 9875
No 12
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.11 E-value=4e-11 Score=104.04 Aligned_cols=75 Identities=15% Similarity=0.291 Sum_probs=64.3
Q ss_pred eeEEEEEE-CCEEEEEE--eCCCCCHHHHHHHH-HHHhCCCCCCceEeeccCCCCCCCCCCCccccccccccccc-CCCc
Q 006022 7 MLKVSAIW-RGKKYVVE--VNSGSPLKELGHEL-QKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSI-IEGK 81 (664)
Q Consensus 7 ~i~ItVk~-~Gk~~~i~--l~~d~TV~dLK~~I-e~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~gl-k~G~ 81 (664)
++.|+|+. .|++++|+ +++++||.+||++| ++.+|+|++.||||| +|+.|.+ ..+|+++++ .+|+
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~y~I~~~~s 70 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKVLHD-------NLFLSDLKVTPANS 70 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEE---TTEECCT-------TCBHHHHCCCGGGC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEE---CCEECcC-------cCCHHHcCCCCCCC
Confidence 36789998 67778876 45999999999999 999999999999999 7877763 256899999 6999
Q ss_pred eEEEeccchh
Q 006022 82 SIRMMGVSED 91 (664)
Q Consensus 82 KImLmGs~~~ 91 (664)
+|+|+|++.-
T Consensus 71 tl~v~~~~~~ 80 (87)
T 2lxa_A 71 TITVMIKPNL 80 (87)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEcCCCc
Confidence 9999999864
No 13
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.09 E-value=2.7e-10 Score=97.76 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=65.7
Q ss_pred CCCeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCce
Q 006022 4 LGSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (664)
Q Consensus 4 ~~~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~K 82 (664)
|+.++.|.|++ .|++++|++++++||.+||.+|++.+|||+++|+|++ +|+.|.+ ..+|+++++++|..
T Consensus 1 m~~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-------~~tL~~~~I~~g~~ 70 (88)
T 2hj8_A 1 MDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKPLED-------QLPLGEYGLKPLST 70 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEES---SSSCCCT-------TSBHHHHHCSTTCE
T ss_pred CCccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEECCC-------CCcHHHcCCCCCCE
Confidence 45689999998 4899999999999999999999999999999999999 6765542 25689999999999
Q ss_pred EEEeccc
Q 006022 83 IRMMGVS 89 (664)
Q Consensus 83 ImLmGs~ 89 (664)
|.|+...
T Consensus 71 i~l~~~~ 77 (88)
T 2hj8_A 71 VFMNLRL 77 (88)
T ss_dssp EEEEEC-
T ss_pred EEEEEEc
Confidence 9998764
No 14
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.09 E-value=2.4e-10 Score=95.37 Aligned_cols=73 Identities=19% Similarity=0.217 Sum_probs=64.2
Q ss_pred CCeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
+..+.|.|++ +|++++|++++++||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|..|
T Consensus 2 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~L~d-------~~tL~~~~i~~~~~l 71 (79)
T 3phx_B 2 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKPLED-------QLPLGEYGLKPLSTV 71 (79)
T ss_dssp -CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBGGGGTCCTTCEE
T ss_pred CCCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEE---CCEECCC-------CCcHHHCCCCCCCEE
Confidence 4578899998 7999999999999999999999999999999999999 7865542 256899999999999
Q ss_pred EEec
Q 006022 84 RMMG 87 (664)
Q Consensus 84 mLmG 87 (664)
.|+.
T Consensus 72 ~l~~ 75 (79)
T 3phx_B 72 FMNL 75 (79)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 15
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.07 E-value=3.1e-10 Score=96.64 Aligned_cols=71 Identities=21% Similarity=0.288 Sum_probs=62.9
Q ss_pred CCeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
+..+.|.|++ +|++++|++++++||.+||.+|++.+|||++.|||++ +|+.|.+ ..+|+++++ +|.+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~~i-~g~~i 83 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRVLQD-------DKKLQEYNV-GGKVI 83 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBGGGGTC-TTEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEECCC-------CCcHHHcCC-CCcEE
Confidence 3579999999 6999999999999999999999999999999999999 7876653 256889999 89999
Q ss_pred EEe
Q 006022 84 RMM 86 (664)
Q Consensus 84 mLm 86 (664)
.|+
T Consensus 84 ~lv 86 (88)
T 4eew_A 84 HLV 86 (88)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 16
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.05 E-value=1.7e-10 Score=102.18 Aligned_cols=75 Identities=12% Similarity=0.287 Sum_probs=65.1
Q ss_pred CeeEEEEEE-CCEEEEE--EeCCCCCHHHHHHHH-HHHhCCCCCCceEeeccCCCCCCCCCCCccccccccccccc-CCC
Q 006022 6 SMLKVSAIW-RGKKYVV--EVNSGSPLKELGHEL-QKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSI-IEG 80 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i--~l~~d~TV~dLK~~I-e~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~gl-k~G 80 (664)
..+.|+|+. +|++|++ ++++++||.+||++| ++.+|+|+++||||| +|+.|.+ ..+|+++++ ++|
T Consensus 18 ~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~dy~I~~~g 87 (98)
T 4a20_A 18 AAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLL---KGKVLHD-------NLFLSDLKVTPAN 87 (98)
T ss_dssp CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEE---TTEEECT-------TCBGGGSCCBTTB
T ss_pred CCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEE---CCEECcC-------cCCHHHcCcCCCC
Confidence 479999998 6777776 566999999999999 999999999999999 7876663 256899999 999
Q ss_pred ceEEEeccch
Q 006022 81 KSIRMMGVSE 90 (664)
Q Consensus 81 ~KImLmGs~~ 90 (664)
..|+||++.+
T Consensus 88 ~ti~lmvskp 97 (98)
T 4a20_A 88 STITVMIKPN 97 (98)
T ss_dssp CEEEEEECCC
T ss_pred CEEEEEEeCC
Confidence 9999999864
No 17
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.05 E-value=1.6e-10 Score=103.06 Aligned_cols=75 Identities=15% Similarity=0.278 Sum_probs=64.4
Q ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 7 ~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
++.|+|++ +|++++|++++++||.+||.+|++.+|||+++|||+| +|+.|.+ ..+|+++++++|.+|.|
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~~~i~~g~~i~l 70 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIY---SGKVLQD-------SKTVSECGLKDGDQVVF 70 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEE---TTEECCT-------TSBTTTTTCCTTCEEEE
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCEECCC-------cCCHHHcCCCCCCEEEE
Confidence 36799996 8999999999999999999999999999999999999 7876653 25689999999999999
Q ss_pred eccchh
Q 006022 86 MGVSED 91 (664)
Q Consensus 86 mGs~~~ 91 (664)
+.+...
T Consensus 71 v~~~~~ 76 (106)
T 3m62_B 71 MVSQKK 76 (106)
T ss_dssp ECCC--
T ss_pred EEcCCC
Confidence 998654
No 18
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=4.6e-10 Score=93.45 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=64.4
Q ss_pred CeeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..+.|.|+ ++|+.+++++++++||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|+++++++|.+|.
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~---~gk~L~d-------~~tL~~~~i~~g~~i~ 75 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLF---KGKALAD-------GKRLSDYSIGPNSKLN 75 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEE---TTEECCT-------TSBGGGGTCCSSBCCE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCeECCC-------CCcHHHcCCCCCCEEE
Confidence 46888887 57899999999999999999999999999999999999 6765542 2568999999999999
Q ss_pred Eeccc
Q 006022 85 MMGVS 89 (664)
Q Consensus 85 LmGs~ 89 (664)
|+...
T Consensus 76 l~~~~ 80 (81)
T 2dzi_A 76 LVVKP 80 (81)
T ss_dssp EECCC
T ss_pred EEEeC
Confidence 98753
No 19
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.04 E-value=4.3e-10 Score=96.76 Aligned_cols=72 Identities=15% Similarity=0.318 Sum_probs=64.4
Q ss_pred CeeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..+.|.|+ ++|+++.|++++++||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|+++|+++|.+|.
T Consensus 16 ~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-------~~tL~~~gi~~g~~i~ 85 (91)
T 3v6c_B 16 GSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLH 85 (91)
T ss_dssp CSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TCBTGGGTCCTTCEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEE---CCeECCC-------cCcHHHCCCCCCCEEE
Confidence 46899999 78999999999999999999999999999999999999 7876542 2568999999999999
Q ss_pred Eec
Q 006022 85 MMG 87 (664)
Q Consensus 85 LmG 87 (664)
|+.
T Consensus 86 l~~ 88 (91)
T 3v6c_B 86 LVL 88 (91)
T ss_dssp EEC
T ss_pred EEE
Confidence 975
No 20
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.02 E-value=3.7e-10 Score=96.71 Aligned_cols=73 Identities=18% Similarity=0.302 Sum_probs=63.5
Q ss_pred eeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCC-CCCCCCcccccccccccccCCCceEE
Q 006022 7 MLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSK-LLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 7 ~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~-Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
-++|.|+ |+|++++|++++++||.+||++|++.+|||+++|||++ +|+. |.+ ..+|+++++++|.+|.
T Consensus 10 ~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~lL~D-------~~tL~~y~I~~gs~i~ 79 (84)
T 2kk8_A 10 HMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIV---DGIVILRE-------DLTVEQCQIVPTSDIQ 79 (84)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCCS-------SSBHHHHTCCTTSCEE
T ss_pred ceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEEecCC-------cCCHHHcCCCCCCEEE
Confidence 4677775 78999999999999999999999999999999999999 6765 442 2578999999999999
Q ss_pred Eeccc
Q 006022 85 MMGVS 89 (664)
Q Consensus 85 LmGs~ 89 (664)
|+..+
T Consensus 80 lv~~p 84 (84)
T 2kk8_A 80 LEVSS 84 (84)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98754
No 21
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.01 E-value=8.6e-10 Score=92.89 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=64.7
Q ss_pred CeeEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCc
Q 006022 6 SMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKL---TDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 6 ~~i~ItVk~~-Gk~~~i~l~~d~TV~dLK~~Ie~l---TgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
.++.|+|++. |++++|++++++||.+||.+|++. +|||+++|+|++ +|+.|.+ ..+|+++++++|.
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~~i~~g~ 73 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKILSD-------DVPIRDYRIDEKN 73 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE---TTEECCT-------TSBGGGGCCCTTS
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEE---CCEECcC-------CCCHHHcCCCCCC
Confidence 3688999995 899999999999999999999997 999999999999 6765542 2568999999999
Q ss_pred eEEEeccch
Q 006022 82 SIRMMGVSE 90 (664)
Q Consensus 82 KImLmGs~~ 90 (664)
+|.|+.++.
T Consensus 74 ~i~l~~~~~ 82 (85)
T 2wyq_A 74 FVVVMVTKT 82 (85)
T ss_dssp EEEEEEC--
T ss_pred EEEEEEcCC
Confidence 999998764
No 22
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.00 E-value=5e-10 Score=98.02 Aligned_cols=73 Identities=19% Similarity=0.359 Sum_probs=63.8
Q ss_pred CCeeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
+..+.|.|+ ++|+++.|++++++||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|++++|++|.+|
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~~i~~g~~i 89 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTL 89 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TCBSGGGTCCTTEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEE---CCEECCC-------CCcHHHCCCCCCCEE
Confidence 357899999 68999999999999999999999999999999999999 7876642 256899999999999
Q ss_pred EEec
Q 006022 84 RMMG 87 (664)
Q Consensus 84 mLmG 87 (664)
.|+.
T Consensus 90 ~l~~ 93 (98)
T 4hcn_B 90 HLVL 93 (98)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9975
No 23
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.00 E-value=5.4e-10 Score=95.95 Aligned_cols=71 Identities=10% Similarity=0.297 Sum_probs=62.3
Q ss_pred eEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 8 LKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+.|.|+ +.|++++|++++++||.+||.+|++.+|||++.|||++ +|+.|.+ ..+|+++++++|.+|.|+
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~~i~~g~~l~l~ 70 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMND-------EKTAADYKILGGSVLHLV 70 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TSBTTTTTCCTTCEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEE---CCeECCC-------CCcHHHcCCCCCCEEEEE
Confidence 357888 68999999999999999999999999999999999999 7876642 256899999999999998
Q ss_pred cc
Q 006022 87 GV 88 (664)
Q Consensus 87 Gs 88 (664)
-.
T Consensus 71 ~r 72 (88)
T 4fbj_B 71 LA 72 (88)
T ss_dssp CB
T ss_pred EE
Confidence 43
No 24
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.00 E-value=7.9e-10 Score=97.68 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=66.2
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
..+.|+|++.|+++.|+++++.||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|.++++++|..|.|
T Consensus 24 ~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~gI~~g~~I~l 93 (101)
T 2klc_A 24 KIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIF---AGKILKD-------QDTLSQHGIHDGLTVHL 93 (101)
T ss_dssp CCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEE---TTEEECT-------TCCTGGGTCCTTCEEEE
T ss_pred CeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------cCcHHHcCCCCCCEEEE
Confidence 5799999999999999999999999999999999999999999999 6765542 25689999999999999
Q ss_pred eccc
Q 006022 86 MGVS 89 (664)
Q Consensus 86 mGs~ 89 (664)
+...
T Consensus 94 ~~~~ 97 (101)
T 2klc_A 94 VIKT 97 (101)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9864
No 25
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.00 E-value=7e-10 Score=97.95 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=68.0
Q ss_pred CCCCCCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCC
Q 006022 1 MQDLGSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (664)
Q Consensus 1 m~~~~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G 80 (664)
|...+.++.|.|++.+.+++|+++++.||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|+++++++|
T Consensus 16 ~~~~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~ygI~~g 85 (100)
T 1yqb_A 16 PRGSPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKILKD-------PDSLAQCGVRDG 85 (100)
T ss_dssp CSCCTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBHHHHTCCTT
T ss_pred CCCCCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------cCcHHHCCCCCC
Confidence 344557899999998777899999999999999999999999999999999 6765542 256899999999
Q ss_pred ceEEEeccc
Q 006022 81 KSIRMMGVS 89 (664)
Q Consensus 81 ~KImLmGs~ 89 (664)
.+|.|+...
T Consensus 86 stI~l~~r~ 94 (100)
T 1yqb_A 86 LTVHLVIKR 94 (100)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEcC
Confidence 999998754
No 26
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.99 E-value=5.8e-10 Score=96.74 Aligned_cols=75 Identities=17% Similarity=0.245 Sum_probs=66.2
Q ss_pred CCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..+|.|.|++.|++++|+++++.||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|.++++++|.+|.
T Consensus 15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-------~~tL~~~gi~~g~~i~ 84 (96)
T 1wx8_A 15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIF---TGKILRD-------QDILSQRGILDGSTVH 84 (96)
T ss_dssp SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEE---TTEECCT-------TSCHHHHTCCTTEEEE
T ss_pred CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEECCC-------cCCHHHCCCCCCCEEE
Confidence 35799999999999999999999999999999999999999999999 6765542 2568999999999999
Q ss_pred Eeccc
Q 006022 85 MMGVS 89 (664)
Q Consensus 85 LmGs~ 89 (664)
|+...
T Consensus 85 l~~~~ 89 (96)
T 1wx8_A 85 VVVRS 89 (96)
T ss_dssp CCBCC
T ss_pred EEEeC
Confidence 98653
No 27
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.98 E-value=1e-09 Score=92.89 Aligned_cols=72 Identities=10% Similarity=0.275 Sum_probs=63.9
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..+.|.|+. .|++++|++++++||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|..|.
T Consensus 11 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~G~~L~d-------~~tL~~~~i~~~~~i~ 80 (88)
T 3dbh_I 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMND-------EKTAADYKILGGSVLH 80 (88)
T ss_dssp CCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEECCT-------TSBGGGGTCCTTCEEE
T ss_pred CcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCeECCC-------CCcHHHcCCCCCCEEE
Confidence 468999995 8999999999999999999999999999999999999 7875542 2568999999999999
Q ss_pred Eec
Q 006022 85 MMG 87 (664)
Q Consensus 85 LmG 87 (664)
|+-
T Consensus 81 l~~ 83 (88)
T 3dbh_I 81 LVL 83 (88)
T ss_dssp ECC
T ss_pred EEE
Confidence 874
No 28
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.98 E-value=1.1e-09 Score=91.79 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=63.0
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
+++.|.|++ .|+++.|++++++||.+||.+|++.++||+++|+|++ +|+.|.+ ..+|+++++++|.+|.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~---~g~~L~d-------~~tL~~~~i~~~~~l~ 71 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKWSTLF 71 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TSBTGGGTCCTTCEEE
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEE---CCEECCC-------CCCHHHcCCCCCCEEE
Confidence 468899997 6799999999999999999999999999999999999 7765552 2568899999999999
Q ss_pred Eec
Q 006022 85 MMG 87 (664)
Q Consensus 85 LmG 87 (664)
|+-
T Consensus 72 l~~ 74 (85)
T 3mtn_B 72 LLL 74 (85)
T ss_dssp EEC
T ss_pred EEE
Confidence 974
No 29
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.97 E-value=1.6e-09 Score=94.35 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=63.8
Q ss_pred eEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHH---hCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKL---TDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 8 i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~l---TgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
+.|+|++ .|+.++|++++++||.+||.+|++. +|||+++|+|++ +|+.|.+ ..+|+++++++|.+|
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~ygI~~g~~i 70 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIY---AGKILND-------DTALKEYKIDEKNFV 70 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE---TTEECCT-------TSBGGGGTCCSSSEE
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEE---CCEECCC-------cCcHHHCCCCCCCEE
Confidence 4689998 5999999999999999999999999 899999999999 6765542 256899999999999
Q ss_pred EEeccch
Q 006022 84 RMMGVSE 90 (664)
Q Consensus 84 mLmGs~~ 90 (664)
.|+....
T Consensus 71 ~l~~~~~ 77 (95)
T 1uel_A 71 VVMVTKP 77 (95)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 9998653
No 30
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.96 E-value=1.3e-09 Score=89.13 Aligned_cols=70 Identities=10% Similarity=0.287 Sum_probs=61.3
Q ss_pred eEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+.|.|++ .|+++.+++++++||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|.+|.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~L~d-------~~tL~~~~i~~g~~i~l~ 70 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY---SGKQMND-------EKTAADYKILGGSVLHLV 70 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBGGGGTCCTTCEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEE---CCEECCC-------CCcHHHcCCCCCCEEEEE
Confidence 4688998 6899999999999999999999999999999999999 6765542 256899999999999987
Q ss_pred c
Q 006022 87 G 87 (664)
Q Consensus 87 G 87 (664)
-
T Consensus 71 ~ 71 (76)
T 1ndd_A 71 L 71 (76)
T ss_dssp E
T ss_pred E
Confidence 4
No 31
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.96 E-value=1.6e-09 Score=92.68 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=65.1
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
.+|.|.|++ .|+++.|++.+++||.+||.+|++.+|||++.|||++ +|+.|.+ ..+|+++++ +|..|.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~---~Gk~L~d-------~~tL~~~~i-~g~~i~ 72 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIY---QGRVLQD-------DKKLQEYNV-GGKVIH 72 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBGGGGTC-TTEEEE
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCeECCC-------CCCHHHcCC-CCcEEE
Confidence 578999999 5899999999999999999999999999999999999 7876652 256899999 899999
Q ss_pred Eeccch
Q 006022 85 MMGVSE 90 (664)
Q Consensus 85 LmGs~~ 90 (664)
|+-...
T Consensus 73 l~~~~~ 78 (90)
T 4dwf_A 73 LVERAP 78 (90)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 987643
No 32
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.95 E-value=1.4e-09 Score=95.04 Aligned_cols=76 Identities=20% Similarity=0.278 Sum_probs=66.0
Q ss_pred CCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
...+.|.|+|.+.+++|++++++||.+||.+|++.+|||+++|||++ +|+.|.+ . ..+|+++++++|.+|.
T Consensus 13 ~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D----~--~~tL~~ygI~~gstl~ 83 (94)
T 2kan_A 13 VRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYY---SGIELAD----D--YRNLNEYGITEFSEIV 83 (94)
T ss_dssp SCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEE---TTEEECC----T--TSBHHHHTCCTTEEEE
T ss_pred CCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEE---CCEECCC----C--cccHHHCCCCCCCEEE
Confidence 35799999999889999999999999999999999999999999999 6765542 1 1568999999999999
Q ss_pred Eeccc
Q 006022 85 MMGVS 89 (664)
Q Consensus 85 LmGs~ 89 (664)
|+...
T Consensus 84 lv~r~ 88 (94)
T 2kan_A 84 VFLKS 88 (94)
T ss_dssp EEECC
T ss_pred EEEeC
Confidence 98653
No 33
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.95 E-value=8.8e-10 Score=92.52 Aligned_cols=72 Identities=17% Similarity=0.335 Sum_probs=62.0
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
.++.|.|++ +|++++|++++++||.+||.+|++.++||+++|+|++ +|+.|.+ ..+|+++++++|.+|.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~---~g~~L~d-------~~tL~~~~i~~~~~i~ 71 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIHNHSALY 71 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TBEECCT-------TCBTTTTTCCTTCEEE
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEE---CCeECCC-------CCCHHHCCCCCCCEEE
Confidence 367899994 7899999999999999999999999999999999999 7765542 2568999999999999
Q ss_pred Eec
Q 006022 85 MMG 87 (664)
Q Consensus 85 LmG 87 (664)
|+-
T Consensus 72 l~~ 74 (85)
T 3n3k_B 72 LLL 74 (85)
T ss_dssp EEE
T ss_pred EEE
Confidence 974
No 34
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.94 E-value=1.4e-09 Score=95.95 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=62.8
Q ss_pred CeeEEEEEE--CC---EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCC
Q 006022 6 SMLKVSAIW--RG---KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (664)
Q Consensus 6 ~~i~ItVk~--~G---k~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G 80 (664)
..+.|+|++ ++ ++|+|++++++||.+||++|++.+|||+++|||++ +|+.|.++ ..+|.+++|++|
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~gk~L~D~------~~tL~~ygI~~g 76 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVY---MEQLLTDD------HCSLGSYGLKDG 76 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEE---TTEEECCS------SSBHHHHTCCTT
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEE---CCEECCCC------cccHHHCCCCCC
Confidence 357777777 54 89999999999999999999999999999999999 67655422 246899999999
Q ss_pred ceEEEecc
Q 006022 81 KSIRMMGV 88 (664)
Q Consensus 81 ~KImLmGs 88 (664)
..|+|+..
T Consensus 77 ~~l~l~~~ 84 (102)
T 1v5o_A 77 DMVVLLQK 84 (102)
T ss_dssp EEEEECBC
T ss_pred CEEEEEEC
Confidence 99999974
No 35
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.94 E-value=1.9e-09 Score=95.86 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=66.3
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..+.|.|++ .|+++.|+++++.||.+||.+|++.+|||+++|+|++ +|+.|.+ ..+|++++++.|..|.
T Consensus 22 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~ygI~~g~ti~ 91 (106)
T 1ttn_A 22 YECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFF---SGRPLTD-------KMKFEELKIPKDYVVQ 91 (106)
T ss_dssp CSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEE---TTEECCT-------TSHHHHCCCSSSCEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEE---CCEECCC-------CCcHHHcCCCCCCEEE
Confidence 468999998 6999999999999999999999999999999999999 6765542 2578999999999999
Q ss_pred Eeccch
Q 006022 85 MMGVSE 90 (664)
Q Consensus 85 LmGs~~ 90 (664)
|+....
T Consensus 92 lv~~~~ 97 (106)
T 1ttn_A 92 VIVSQP 97 (106)
T ss_dssp EECCCS
T ss_pred EEEeCC
Confidence 998653
No 36
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.93 E-value=2.3e-09 Score=87.65 Aligned_cols=71 Identities=17% Similarity=0.316 Sum_probs=61.4
Q ss_pred eEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+.|+|++ +|+++.+++++++||.+||.+|++.+|+|+++|+|++ +|+.|.+ ..+|+++++++|..|.|+
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~---~g~~L~d-------~~tL~~~~i~~g~~i~l~ 70 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQRESTLHLV 70 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TCBTGGGTCCTTCEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEE---CCeECCC-------CCcHHHcCCCCCCEEEEE
Confidence 3688987 6899999999999999999999999999999999999 6765542 256899999999999987
Q ss_pred cc
Q 006022 87 GV 88 (664)
Q Consensus 87 Gs 88 (664)
-.
T Consensus 71 ~~ 72 (76)
T 3a9j_A 71 LR 72 (76)
T ss_dssp EC
T ss_pred Ee
Confidence 53
No 37
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.92 E-value=2.9e-09 Score=90.20 Aligned_cols=73 Identities=16% Similarity=0.198 Sum_probs=64.0
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
.++.|.|++ .|+++.|++++++||.+||.+|++.+|||+++|+|++ +|..|.+ ..+|+++++++|.+|.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~Gk~L~d-------~~tL~~~~i~~g~~i~ 75 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEF---QGQVLQD-------WLGLGIYGIQDSDTLI 75 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEE---TTEECCS-------SSBHHHHTCCTTEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEE---CCEEccC-------CCCHHHCCCCCCCEEE
Confidence 478999998 6899999999999999999999999999999999999 6765542 2568999999999999
Q ss_pred Eecc
Q 006022 85 MMGV 88 (664)
Q Consensus 85 LmGs 88 (664)
|+..
T Consensus 76 l~~~ 79 (87)
T 1wh3_A 76 LSKK 79 (87)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8754
No 38
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.92 E-value=1.2e-09 Score=94.98 Aligned_cols=71 Identities=10% Similarity=0.187 Sum_probs=61.9
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
..+.|.|++ |+++.|++++++||.+||.+|++.+|||+++|+|++ +|+.|.+ ..+|+++++++|..|.|
T Consensus 18 ~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~y~I~~gstI~l 86 (93)
T 2l7r_A 18 GSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLL---AGAPLED-------EATLGQCGVEALTTLEV 86 (93)
T ss_dssp --CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEE---TTEECCT-------TSBHHHHTCCSSCEEEE
T ss_pred CcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEE---CCEECCC-------CCcHHHCCCCCCCEEEE
Confidence 368999999 899999999999999999999999999999999999 6765542 25689999999999998
Q ss_pred ec
Q 006022 86 MG 87 (664)
Q Consensus 86 mG 87 (664)
+-
T Consensus 87 v~ 88 (93)
T 2l7r_A 87 AG 88 (93)
T ss_dssp EC
T ss_pred EE
Confidence 74
No 39
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.92 E-value=3e-09 Score=97.78 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=66.0
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.++.|.|++.|++++|+++++.||.+||.+|++.+|||+++|||+| +|+.|.+ ..+|.+++|++|.+|.|
T Consensus 31 ~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~dygI~~gstI~l 100 (125)
T 1j8c_A 31 KIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIF---AGKILKD-------QDTLIQHGIHDGLTVHL 100 (125)
T ss_dssp CCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEE---TTEEEST-------TSCGGGTTCSSSEEEEE
T ss_pred CcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEE---CCEEcCC-------CCCHHHcCCCCCCEEEE
Confidence 4799999999999999999999999999999999999999999999 7876642 25689999999999999
Q ss_pred eccchh
Q 006022 86 MGVSED 91 (664)
Q Consensus 86 mGs~~~ 91 (664)
+.....
T Consensus 101 v~~~~g 106 (125)
T 1j8c_A 101 VIKRDP 106 (125)
T ss_dssp EEC---
T ss_pred EeccCC
Confidence 987543
No 40
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=2.2e-09 Score=92.81 Aligned_cols=73 Identities=14% Similarity=0.194 Sum_probs=61.5
Q ss_pred CeeEEEEEECCE---EEEEEeCCCCCHHHHHHHHHHHh--CCCCCCceEeeccCCCCCCCCCCCccccccccccc--ccC
Q 006022 6 SMLKVSAIWRGK---KYVVEVNSGSPLKELGHELQKLT--DVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEV--SII 78 (664)
Q Consensus 6 ~~i~ItVk~~Gk---~~~i~l~~d~TV~dLK~~Ie~lT--gVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~--glk 78 (664)
..|.|+|+|.+. +++|++++++||.+||++|++.+ +||+++|||+| +|+.|.+ ..+|+++ +++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~---~Gk~L~D-------~~tL~~~~~~i~ 75 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIY---SGKLLLD-------HQCLRDLLPKQE 75 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE---TTEECCS-------SSCHHHHSCSSS
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEE---CCEECcC-------cCCHHHHhcCCC
Confidence 368999999755 35667779999999999999999 99999999999 7876653 2468889 999
Q ss_pred CCceEEEecc
Q 006022 79 EGKSIRMMGV 88 (664)
Q Consensus 79 ~G~KImLmGs 88 (664)
+|..|+|+-.
T Consensus 76 ~~~~i~lv~~ 85 (93)
T 1wgd_A 76 KRHVLHLVCN 85 (93)
T ss_dssp CSEEEEEECC
T ss_pred CCCEEEEEeC
Confidence 9999999853
No 41
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=4e-09 Score=93.51 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=65.4
Q ss_pred CCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
+.+|.|.|++.+.++.|+++++.||.+||.+|++.+|||+++|||+| +|+.|.+ ..+|.+++|+.|..|.
T Consensus 15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~gi~~g~~i~ 84 (106)
T 1wx7_A 15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIF---AGKILKD-------PDSLAQCGVRDGLTVH 84 (106)
T ss_dssp SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEE---TTEECCT-------TSCHHHHTCCTTEEEE
T ss_pred CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------cCcHHHcCCCCCCEEE
Confidence 35799999998767899999999999999999999999999999999 6765542 2568999999999999
Q ss_pred Eeccc
Q 006022 85 MMGVS 89 (664)
Q Consensus 85 LmGs~ 89 (664)
|+...
T Consensus 85 l~~~~ 89 (106)
T 1wx7_A 85 LVIKR 89 (106)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98753
No 42
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.89 E-value=3.5e-09 Score=91.36 Aligned_cols=71 Identities=17% Similarity=0.320 Sum_probs=62.4
Q ss_pred eEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+.|.|++ +|+++.|++++++||.+||.+|++.+|||+++|+|++ +|+.|.+ ..+|+++++++|..|.|+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~---~G~~L~d-------~~tL~~~~i~~~~~i~l~ 71 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLV 71 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEE---CCEECCC-------CCcHHHcCCCCCCEEEEE
Confidence 4688886 7899999999999999999999999999999999999 7876552 257899999999999998
Q ss_pred cc
Q 006022 87 GV 88 (664)
Q Consensus 87 Gs 88 (664)
..
T Consensus 72 ~r 73 (96)
T 3k9o_B 72 LR 73 (96)
T ss_dssp EC
T ss_pred EE
Confidence 64
No 43
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.88 E-value=3e-09 Score=95.44 Aligned_cols=71 Identities=17% Similarity=0.339 Sum_probs=63.5
Q ss_pred eeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 7 MLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 7 ~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.+.|+|+ ++|+++.|.+++++||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|+++++++|.+|.|
T Consensus 35 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~~gI~~gs~I~l 104 (111)
T 3vdz_A 35 AMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHL 104 (111)
T ss_dssp CEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTTTTTCCTTCEEEE
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEE---CCEECCC-------CCcHHHCCCCCCCEEEE
Confidence 6899999 68999999999999999999999999999999999999 7876652 25688999999999998
Q ss_pred ec
Q 006022 86 MG 87 (664)
Q Consensus 86 mG 87 (664)
+-
T Consensus 105 ~~ 106 (111)
T 3vdz_A 105 VL 106 (111)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 44
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.88 E-value=5.1e-09 Score=89.13 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=63.0
Q ss_pred CCeeEEEEEEC-C-EEEEE-EeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCc
Q 006022 5 GSMLKVSAIWR-G-KKYVV-EVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 5 ~~~i~ItVk~~-G-k~~~i-~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
+.++.|.|++. | +++.| +++++.||.+||.+|++.+|||+++|+|++ +|+.|.+ ..+|.++++++|.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~---~gk~L~d-------~~tL~~~~i~~g~ 74 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFY---RGKQLEN-------GYTLFDYDVGLND 74 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEE---TTEECCS-------SSBHHHHTCCTTC
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCeECCC-------CCCHHHCCCCCCC
Confidence 35789999984 6 69999 599999999999999999999999999999 6765542 2568999999999
Q ss_pred eEEEec
Q 006022 82 SIRMMG 87 (664)
Q Consensus 82 KImLmG 87 (664)
.|.|+-
T Consensus 75 ~i~l~~ 80 (89)
T 1wy8_A 75 IIQLLV 80 (89)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999874
No 45
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.86 E-value=5.2e-09 Score=91.15 Aligned_cols=72 Identities=17% Similarity=0.306 Sum_probs=62.9
Q ss_pred eEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+.|+|++ .|+++.|++++++||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|..|.|+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~---~Gk~L~D-------~~tL~~~gi~~g~~i~l~ 70 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLV 70 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------CCCHHHcCCCCCCEEEEE
Confidence 3688998 6899999999999999999999999999999999999 6765542 256899999999999998
Q ss_pred ccc
Q 006022 87 GVS 89 (664)
Q Consensus 87 Gs~ 89 (664)
...
T Consensus 71 ~~~ 73 (98)
T 1yx5_B 71 LRL 73 (98)
T ss_dssp ECC
T ss_pred EeC
Confidence 764
No 46
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.84 E-value=5.9e-09 Score=86.50 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=61.1
Q ss_pred eeEEEEEEC-CEE-EEEE-eCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 7 MLKVSAIWR-GKK-YVVE-VNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 7 ~i~ItVk~~-Gk~-~~i~-l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
.+.|.|++. |++ +.|+ +++++||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|..|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~---~g~~L~d-------~~tL~~~~i~~g~~i 71 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFY---RGKQMED-------GHTLFDYEVRLNDTI 71 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TCBTTTTTCCTTCEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------CCCHHHcCCCCCCEE
Confidence 467899884 777 5999 99999999999999999999999999999 6765542 256899999999999
Q ss_pred EEecc
Q 006022 84 RMMGV 88 (664)
Q Consensus 84 mLmGs 88 (664)
.|+-.
T Consensus 72 ~l~~r 76 (78)
T 2faz_A 72 QLLVR 76 (78)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 98743
No 47
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.84 E-value=4.6e-09 Score=90.13 Aligned_cols=69 Identities=19% Similarity=0.355 Sum_probs=59.8
Q ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEecc
Q 006022 10 VSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGV 88 (664)
Q Consensus 10 ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmGs 88 (664)
+..++.|+++.|++++++||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|+++++++|.+|.|+..
T Consensus 13 ~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~---~Gk~L~D-------~~tL~~~gi~~g~~i~l~~r 81 (88)
T 1sif_A 13 FIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLVLR 81 (88)
T ss_dssp EEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TSBSGGGTCCTTCEEEEEC-
T ss_pred EEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEE---CCEECCC-------CCcHHHcCCCCCCEEEEEEe
Confidence 345689999999999999999999999999999999999999 6765542 25689999999999999864
No 48
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.83 E-value=7.8e-09 Score=90.14 Aligned_cols=78 Identities=13% Similarity=0.052 Sum_probs=64.1
Q ss_pred eeEEEEEECCE--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCC---CCCCCCcccccccccccccCCCc
Q 006022 7 MLKVSAIWRGK--KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSK---LLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 7 ~i~ItVk~~Gk--~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~---Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
.|+|.|++++. .++++++++.||.+||++|+..+||||++|+|++....|+. |.. | ..+|.++++.+|.
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~---D---~~tL~~y~i~~g~ 80 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQ---E---DALLGSYPVDDGC 80 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCC---S---SSBTTSSSCCTTC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCC---C---cCCHhHCCCCCCC
Confidence 59999999998 79999999999999999999999999999999983211222 121 1 3578999999999
Q ss_pred eEEEeccch
Q 006022 82 SIRMMGVSE 90 (664)
Q Consensus 82 KImLmGs~~ 90 (664)
+|.|+...+
T Consensus 81 ~l~v~d~~P 89 (95)
T 1v6e_A 81 RIHVIDHSG 89 (95)
T ss_dssp EEEEBCCSC
T ss_pred EEEEEECCc
Confidence 999987653
No 49
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.83 E-value=6.6e-09 Score=99.13 Aligned_cols=74 Identities=18% Similarity=0.314 Sum_probs=65.8
Q ss_pred CeeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
.++.|.|+ |+|++++|++++++||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|+++++++|.+|.
T Consensus 19 ~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~---~g~~L~d-------~~tL~~~~i~~~~~l~ 88 (172)
T 3u30_A 19 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLH 88 (172)
T ss_dssp CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TCBTGGGTCCTTCEEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCccccc-------cCCHhHcCCcccceee
Confidence 46899998 99999999999999999999999999999999999999 6765542 2578999999999999
Q ss_pred Eeccc
Q 006022 85 MMGVS 89 (664)
Q Consensus 85 LmGs~ 89 (664)
|+...
T Consensus 89 l~~~~ 93 (172)
T 3u30_A 89 LVLRL 93 (172)
T ss_dssp EEECC
T ss_pred eeecc
Confidence 99753
No 50
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.82 E-value=1.1e-08 Score=93.54 Aligned_cols=85 Identities=15% Similarity=0.256 Sum_probs=66.8
Q ss_pred CCCCeeEEEEEECCE--EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCC
Q 006022 3 DLGSMLKVSAIWRGK--KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (664)
Q Consensus 3 ~~~~~i~ItVk~~Gk--~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G 80 (664)
+|+..|+|.|++++. .+++.++++.||.+||.+|+..+||||++|+|++....|+.+. ...+ +..+|.+++|.+|
T Consensus 2 ~m~~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~-~l~~--D~~tL~~y~i~~g 78 (122)
T 1t0y_A 2 SMTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKG-ELTD--GAKSLKDLGVRDG 78 (122)
T ss_dssp -CCCEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEE-ECCC--CSSBTTTTTCCSS
T ss_pred CCCCEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCcccc-ccCC--CcCCHHHCCCCCC
Confidence 477799999999998 6899999999999999999999999999999998421122110 0001 1357899999999
Q ss_pred ceEEEeccch
Q 006022 81 KSIRMMGVSE 90 (664)
Q Consensus 81 ~KImLmGs~~ 90 (664)
.+|.|+.+.+
T Consensus 79 ~~ihvvd~~p 88 (122)
T 1t0y_A 79 YRIHAVDVTG 88 (122)
T ss_dssp EEEEEEECTT
T ss_pred CEEEEEeCCC
Confidence 9999987654
No 51
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.81 E-value=8.4e-09 Score=92.26 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=63.1
Q ss_pred CeeEEEEEE----CCEEEEEEeCC-CCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCC
Q 006022 6 SMLKVSAIW----RGKKYVVEVNS-GSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (664)
Q Consensus 6 ~~i~ItVk~----~Gk~~~i~l~~-d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G 80 (664)
..|.|.|++ +|+.++|++++ ++||.+||.+|++.+|||++.|||++ +|+.|.+ ..+|+++++++|
T Consensus 26 ~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~L~D-------~~tL~~y~I~~g 95 (111)
T 1we6_A 26 GPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG---KAGFLKD-------NMSLAHYNVGAG 95 (111)
T ss_dssp SCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEEC---SSSBCCT-------TSBTTTTTCSSS
T ss_pred CcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEE---CCEECCC-------CCcHHHCCCCCC
Confidence 368899998 68999999998 99999999999999999999999999 6765542 256899999999
Q ss_pred ceEEEec
Q 006022 81 KSIRMMG 87 (664)
Q Consensus 81 ~KImLmG 87 (664)
.+|+|+-
T Consensus 96 ~~l~l~~ 102 (111)
T 1we6_A 96 EILTLSL 102 (111)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 9999974
No 52
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.80 E-value=5.5e-09 Score=93.14 Aligned_cols=73 Identities=10% Similarity=0.219 Sum_probs=61.3
Q ss_pred eeEEEEEEC-----CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCc
Q 006022 7 MLKVSAIWR-----GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 7 ~i~ItVk~~-----Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
+.+|+|+-. +++++|++.+++||.+||+.|++.+||||+.||||| .|+.|++ ..+|++++|++|.
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~---~GKiL~D-------~~TL~~y~I~~gs 84 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVI---NKKQLQL-------GKTLEEQGVAHNV 84 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEE---TTEECCT-------TSBHHHHTCCSSE
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEe---CCeECCC-------CCcHHHcCCCCCC
Confidence 455666544 468899999999999999999999999999999999 7877753 2578999999999
Q ss_pred eEEEeccc
Q 006022 82 SIRMMGVS 89 (664)
Q Consensus 82 KImLmGs~ 89 (664)
+||+|-..
T Consensus 85 ti~vl~lr 92 (100)
T 1wju_A 85 KAMVLELK 92 (100)
T ss_dssp EEEEECCC
T ss_pred EEEEEEEC
Confidence 99988544
No 53
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.80 E-value=1.2e-08 Score=91.47 Aligned_cols=73 Identities=16% Similarity=0.298 Sum_probs=63.9
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
.++.|+|++ .|+++.|+++++.||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|+++++++|.+|.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~~gI~~gs~I~ 103 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLH 103 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEECCS-------SCBTTTTTCCTTCEEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEE---CCEECCC-------CCcHHHcCCCCCCEEE
Confidence 368999998 5899999999999999999999999999999999999 6765542 2568899999999999
Q ss_pred Eecc
Q 006022 85 MMGV 88 (664)
Q Consensus 85 LmGs 88 (664)
|+..
T Consensus 104 l~~r 107 (111)
T 2ojr_A 104 LVLR 107 (111)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9753
No 54
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.80 E-value=6e-09 Score=92.82 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=64.1
Q ss_pred eeEEEEEECCE----EEEEEeCC---------CCCHHHHHHHHHHHh--CCCCCC-ceEeeccCCCCCCCCCCCcccccc
Q 006022 7 MLKVSAIWRGK----KYVVEVNS---------GSPLKELGHELQKLT--DVKADT-MRFIVPQNKGSKLLSPFSDEHSSL 70 (664)
Q Consensus 7 ~i~ItVk~~Gk----~~~i~l~~---------d~TV~dLK~~Ie~lT--gVPpe~-QKLL~pk~KG~~Lk~p~sD~~~~l 70 (664)
.|.|+|+|.+. +|+|+|++ +.||.+||++|++.+ |||++. |||+| +|+.|.+ ..
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~---~Gk~L~D-------~~ 81 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIY---CGRKLKD-------DQ 81 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE---TTEECCT-------TC
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEE---CCeECCC-------CC
Confidence 58899999876 89999665 599999999999999 999999 99999 7876652 25
Q ss_pred cccccccCCCceEEEeccch
Q 006022 71 SLQEVSIIEGKSIRMMGVSE 90 (664)
Q Consensus 71 tL~~~glk~G~KImLmGs~~ 90 (664)
+|+++++++|.+|.|+....
T Consensus 82 tL~~y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 82 TLDFYGIQPGSTVHVLRKSW 101 (107)
T ss_dssp BHHHHTCCTTCEEEEEESSC
T ss_pred cHHHcCCCCCCEEEEEeCCC
Confidence 68999999999999998754
No 55
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.78 E-value=1.1e-08 Score=95.91 Aligned_cols=73 Identities=18% Similarity=0.283 Sum_probs=63.7
Q ss_pred eEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEe-eccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 8 LKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFI-VPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 8 i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL-~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
+.|+|+ |+|++++|++++++||.+||.+|++.+||||+.|||+ +. +|+.|.+ ..+|+++++++|..|.|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~--~g~~L~d-------~~tL~~y~i~~~~~l~l 73 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHP--SGVALQD-------RVPLASQGLGPGSTVLL 73 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEET--TCCBCCT-------TSCGGGGTCCTTCEEEE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcC--CCCCCCC-------CCCHHHcCCCCCCEEEE
Confidence 678888 8999999999999999999999999999999999999 72 2655532 25789999999999999
Q ss_pred eccc
Q 006022 86 MGVS 89 (664)
Q Consensus 86 mGs~ 89 (664)
+.+.
T Consensus 74 ~~~~ 77 (159)
T 3rt3_B 74 VVDK 77 (159)
T ss_dssp EECC
T ss_pred EccC
Confidence 9973
No 56
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.78 E-value=8.3e-09 Score=91.99 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=63.0
Q ss_pred CCeeEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk~~-Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
..+|.|.|+-. |++++|++.+++||.+||+.|++.+|+|+++|+|++ .|+.|++ ..+|++++|.+|..|
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~---~Gk~L~D-------~~TL~dygI~~gstl 95 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKK---WYTIFKD-------HVSLGDYEIHDGMNL 95 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCS-------SCBHHHHTCCTTEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEE---CCEECCC-------CCCHHHcCCCCCCEE
Confidence 35799999976 999999999999999999999999999999999999 5765542 257899999999998
Q ss_pred EEe
Q 006022 84 RMM 86 (664)
Q Consensus 84 mLm 86 (664)
-|.
T Consensus 96 hL~ 98 (100)
T 1uh6_A 96 ELY 98 (100)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 57
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.76 E-value=1.3e-08 Score=89.68 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=62.9
Q ss_pred CCeeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
+.+|.|.|+ ..|+++.|++.+++||.+||+.|++.+|+||+.|+|++ .|..|++ ..||.+++|.+|..|
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif---~Gk~LkD-------~~TL~dY~I~dgstL 88 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQK---GGSVLKD-------HISLEDYEVHDQTNL 88 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEe---CCEEccC-------cCCHHHcCCCCCCEE
Confidence 368999999 58999999999999999999999999999999999998 5665553 267899999999998
Q ss_pred EE
Q 006022 84 RM 85 (664)
Q Consensus 84 mL 85 (664)
-|
T Consensus 89 hL 90 (93)
T 3plu_A 89 EL 90 (93)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 58
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.20 E-value=1.2e-09 Score=90.06 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=59.8
Q ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006022 9 KVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 9 ~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
.|.|++ .|+++.+++++++||.+||.+|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|..|.|+.
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~---~gk~L~d-------~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIF---AGKELPN-------HLTVQNCDLEQQSIVHIVQ 71 (76)
Confidence 477887 6889999999999999999999999999999999999 6765542 2568899999999998875
No 59
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.71 E-value=2.7e-08 Score=89.56 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=62.5
Q ss_pred CeeEEEEEE-----------CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccc
Q 006022 6 SMLKVSAIW-----------RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQE 74 (664)
Q Consensus 6 ~~i~ItVk~-----------~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~ 74 (664)
..|+|.|+. .|++++|++++++||.+||.+|++.+|||+++|+|++ +|..|.+ ..+|++
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~---~Gk~L~D-------~~tL~~ 93 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQY---EGIFIKD-------SNSLAY 93 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEE---TTEEECT-------TSBHHH
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE---CCEECCC-------CCCHHH
Confidence 368888887 4789999999999999999999999999999999999 6765542 256899
Q ss_pred cccCCCceEEEec
Q 006022 75 VSIIEGKSIRMMG 87 (664)
Q Consensus 75 ~glk~G~KImLmG 87 (664)
+++++|..|.|+-
T Consensus 94 y~i~~g~~i~lv~ 106 (115)
T 1we7_A 94 YNMASGAVIHLAL 106 (115)
T ss_dssp HTCCSSCEEEEEE
T ss_pred CCCCCCCEEEEEE
Confidence 9999999999874
No 60
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.71 E-value=3.5e-08 Score=86.82 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=60.9
Q ss_pred CCeeEEEEEECCE---EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCC---CCCCCCCcccccccccccccC
Q 006022 5 GSMLKVSAIWRGK---KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGS---KLLSPFSDEHSSLSLQEVSII 78 (664)
Q Consensus 5 ~~~i~ItVk~~Gk---~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~---~Lk~p~sD~~~~ltL~~~glk 78 (664)
+..|+|.|++.+- .+++.++++.||.+||++|+..|||||+.|||++.. .|+ .|.. +..+|+++++.
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~-~g~~~~~L~~------D~~tL~~Y~i~ 85 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK-GDTCVSTMDN------NDAQLGYYANS 85 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE-TTEEEEECCC------TTSBHHHHCCS
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec-CCcccceeCC------CCCCHhHCCcC
Confidence 3589999998654 799999999999999999999999999999999821 022 1221 13578999999
Q ss_pred CCceEEEe
Q 006022 79 EGKSIRMM 86 (664)
Q Consensus 79 ~G~KImLm 86 (664)
+|.+|.|+
T Consensus 86 ~gstihlv 93 (95)
T 2kjr_A 86 DGLRLHVV 93 (95)
T ss_dssp SSCEEEEE
T ss_pred CCCEEEEE
Confidence 99999986
No 61
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.69 E-value=5.5e-08 Score=85.93 Aligned_cols=79 Identities=11% Similarity=0.143 Sum_probs=62.9
Q ss_pred CeeEEEEEECCE---EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCC--CCCCCCCcccccccccccccCCC
Q 006022 6 SMLKVSAIWRGK---KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGS--KLLSPFSDEHSSLSLQEVSIIEG 80 (664)
Q Consensus 6 ~~i~ItVk~~Gk---~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~--~Lk~p~sD~~~~ltL~~~glk~G 80 (664)
..|+|.|++..- .+++.++++.||++||++|+..|||||+.|+|++ .|+ +......+ +..+|+++++.+|
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~---~g~~g~~~~~L~~--D~~tL~~Y~I~~g 87 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL---YDDSGSKVAVLSD--DSRPLGFFSPFDG 87 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEE---ECSSSCBCCCSSG--GGSCHHHHCCCSC
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEE---ecCCCcccceecC--CcCCHHHCCCCCC
Confidence 579999999554 7899999999999999999999999999999998 342 11001111 2357899999999
Q ss_pred ceEEEeccc
Q 006022 81 KSIRMMGVS 89 (664)
Q Consensus 81 ~KImLmGs~ 89 (664)
.+|.|+.+.
T Consensus 88 ~~Ihlvd~~ 96 (97)
T 2kj6_A 88 FRLHIIDLD 96 (97)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEeCC
Confidence 999998764
No 62
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.68 E-value=2.7e-08 Score=89.80 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=63.6
Q ss_pred eeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 7 MLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 7 ~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.+.|.|+ +.|++++|++++++||.+||.+|++.+|||+++|+|++ +|+.|.+ ..+|+++++++|..|.|
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~---~Gk~L~D-------~~tL~~ygI~~gstI~l 78 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIW---AGKQLED-------GRTLSDYNIQRESTLHL 78 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TCBTTTTTCCSSCEEEE
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEE---CCEECCC-------CCcHHHCCCCCCCEEEE
Confidence 5667764 78999999999999999999999999999999999999 6765542 25689999999999999
Q ss_pred eccch
Q 006022 86 MGVSE 90 (664)
Q Consensus 86 mGs~~ 90 (664)
+....
T Consensus 79 ~~~~~ 83 (114)
T 2kdi_A 79 VLRLR 83 (114)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 97654
No 63
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.64 E-value=4.7e-08 Score=90.03 Aligned_cols=73 Identities=16% Similarity=0.303 Sum_probs=63.1
Q ss_pred eEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+.|.|++ +|+++++++++++||.+||.+|++.+|||+++|+|++ +|..|.+ ..+|+++++++|.+|.|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~---~g~~L~d-------~~tL~~~~i~~~~~l~l~ 70 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLV 70 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEE---CCeECcC-------cccHHHhccCCCCeeEEE
Confidence 3588885 6899999999999999999999999999999999999 6765532 256899999999999999
Q ss_pred ccch
Q 006022 87 GVSE 90 (664)
Q Consensus 87 Gs~~ 90 (664)
....
T Consensus 71 ~~~~ 74 (152)
T 3b08_A 71 LRLR 74 (152)
T ss_dssp ECCT
T ss_pred eecc
Confidence 8653
No 64
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.60 E-value=6.4e-08 Score=95.17 Aligned_cols=72 Identities=17% Similarity=0.266 Sum_probs=63.4
Q ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 7 ~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.+.|.|+. .|++++|++++++||.+||++|++.+|||++.|+|++ +|+.|.+ ..+|+++++++|..|.|
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~---~Gk~L~D-------~~tL~dygI~~gstI~L 174 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHL 174 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEECCT-------TCBGGGGTCCTTCEEEE
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEE---CCEECCC-------CCCHHHCCCCCCCEEEE
Confidence 37889987 6899999999999999999999999999999999999 7776552 25689999999999999
Q ss_pred ecc
Q 006022 86 MGV 88 (664)
Q Consensus 86 mGs 88 (664)
+..
T Consensus 175 vlr 177 (189)
T 3q3f_A 175 VLR 177 (189)
T ss_dssp CCC
T ss_pred EEE
Confidence 854
No 65
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.59 E-value=9.1e-08 Score=82.80 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=62.7
Q ss_pred CCeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
...|.|.|++ .|+.+.|+++++.||.+||.+|++.+ +++|+|+| +|+.|.+. ..+|.++++++|..|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~---~Gk~L~D~------~~tL~~y~i~~g~~i 72 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIY---QGRLLQDP------ARTLSSLNITNNCVI 72 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEE---TTEECCCS------SCBTTTTTCCTTEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEE---CCEEccCC------cCCHHHcCCCCCCEE
Confidence 4579999986 69999999999999999999999998 99999999 78766531 156889999999999
Q ss_pred EEeccc
Q 006022 84 RMMGVS 89 (664)
Q Consensus 84 mLmGs~ 89 (664)
.|+...
T Consensus 73 ~l~~~~ 78 (95)
T 1wia_A 73 HCHRSP 78 (95)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 999864
No 66
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=98.59 E-value=9.9e-08 Score=82.40 Aligned_cols=76 Identities=8% Similarity=0.076 Sum_probs=60.6
Q ss_pred eeEEEEEEC---CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCC----CCCCCCCCCcccccccccccccCC
Q 006022 7 MLKVSAIWR---GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNK----GSKLLSPFSDEHSSLSLQEVSIIE 79 (664)
Q Consensus 7 ~i~ItVk~~---Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~K----G~~Lk~p~sD~~~~ltL~~~glk~ 79 (664)
.+.|.|+|. .+.+++.++++.||.+||++|+..+|+||+.|+|++.... |..+. +..+|+.+++.+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~-------d~~tL~~Y~i~~ 74 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMA-------NDKQLGYYQCRD 74 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCC-------TTSBGGGGTCCT
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcC-------CCCCHHHCCCCC
Confidence 688999985 4567889999999999999999999999999999973211 33222 135789999999
Q ss_pred CceEEEeccc
Q 006022 80 GKSIRMMGVS 89 (664)
Q Consensus 80 G~KImLmGs~ 89 (664)
|..|-|+-+.
T Consensus 75 g~~ihlvd~~ 84 (86)
T 4b6w_A 75 EFVIHVVDLQ 84 (86)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999887543
No 67
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.59 E-value=1.1e-07 Score=81.22 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=61.8
Q ss_pred eEEEEEECCEEEEEE-eCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 8 LKVSAIWRGKKYVVE-VNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~-l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+.|.|+|.+-++.|. |++++||.+||+.|++.+|||+++|+|++.. .|+.+. .++ +..+|+++||++|.+|.|.
T Consensus 1 m~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~-p~k~l~--l~~--~~~tL~~~gl~~g~~l~v~ 75 (86)
T 2kzr_A 1 WRVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGY-PPECLD--LSD--RDITLGDLPIQSGDMLIVE 75 (86)
T ss_dssp CCEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESS-CCCCCC--CCC--SSCBTTTSSCCTTCEEECC
T ss_pred CEEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCC-CCcccc--cCC--CCCCHHHcCCCCCCEEEEE
Confidence 358999988888898 9999999999999999999999999999831 233221 121 1357899999999999998
Q ss_pred ccc
Q 006022 87 GVS 89 (664)
Q Consensus 87 Gs~ 89 (664)
...
T Consensus 76 ~~~ 78 (86)
T 2kzr_A 76 EDQ 78 (86)
T ss_dssp CCS
T ss_pred eCC
Confidence 764
No 68
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.57 E-value=1.3e-07 Score=91.03 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=61.2
Q ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006022 9 KVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 9 ~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
.|.|+. .|++++|++++++||.+||.+|++.+|||+++|||++ +|+.|.+ ..+|+++++++|..|.|+.
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLVL 71 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEE---TTEECCT-------TSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEE---CCccccC-------cCcHHHcCCCCCCEEEEEE
Confidence 467766 7899999999999999999999999999999999999 7876542 2568999999999999986
Q ss_pred c
Q 006022 88 V 88 (664)
Q Consensus 88 s 88 (664)
.
T Consensus 72 r 72 (169)
T 3l0w_B 72 R 72 (169)
T ss_dssp C
T ss_pred E
Confidence 5
No 69
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.55 E-value=8.2e-09 Score=94.73 Aligned_cols=71 Identities=18% Similarity=0.305 Sum_probs=0.0
Q ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006022 9 KVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 9 ~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
.|.|++ .|++++|++++++||.+||..|++.+||||+.|+|++ +|..|.+ ..+|++++|.+|..|.|+.
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEE---CCEECCC-------CCchhhhccCCCCEEEEEE
Confidence 467776 6899999999999999999999999999999999999 6765542 2578999999999999985
Q ss_pred cc
Q 006022 88 VS 89 (664)
Q Consensus 88 s~ 89 (664)
..
T Consensus 72 rl 73 (128)
T 3u5e_m 72 RL 73 (128)
T ss_dssp --
T ss_pred Ec
Confidence 43
No 70
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.55 E-value=6.5e-08 Score=103.83 Aligned_cols=75 Identities=12% Similarity=0.194 Sum_probs=65.4
Q ss_pred CeeEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHH---HhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCc
Q 006022 6 SMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQK---LTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 6 ~~i~ItVk~~-Gk~~~i~l~~d~TV~dLK~~Ie~---lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
.+|.|+|++. |++|+|+|.++.||.+||.+|+. .+|||+++||||| +|+.|++ ..+|.+++|+.|.
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy---~GK~L~D-------~~tL~dygI~~gs 75 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY---AGKILSD-------DVPIRDYRIDEKN 75 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES---SSSEECS-------SSBTTTTCCCTTS
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEE---CCeecCC-------cCCHHHcCCCCCC
Confidence 3688999996 99999999999999999999999 6889999999999 7877653 2568999999999
Q ss_pred eEEEeccch
Q 006022 82 SIRMMGVSE 90 (664)
Q Consensus 82 KImLmGs~~ 90 (664)
+|++|+++.
T Consensus 76 tIv~lv~k~ 84 (368)
T 1oqy_A 76 FVVVMVTKT 84 (368)
T ss_dssp CEEEEEECC
T ss_pred EEEEEEecC
Confidence 998887654
No 71
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.54 E-value=1.6e-07 Score=88.04 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=63.3
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..+.|.|+. .|++++|++++++||.+||.+|++.+|+|++.|+|++ +|..|.+ ..+|+++++++|..|.
T Consensus 80 ~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d-------~~tL~~y~i~~g~~l~ 149 (159)
T 3rt3_B 80 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTF---EGKPLED-------QLPLGEYGLKPLSTVF 149 (159)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TSBGGGGTCCTTCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEE---CCeecCC-------CCCHHHcCCCCCCEEE
Confidence 357788887 5899999999999999999999999999999999999 7765542 2568999999999999
Q ss_pred Eecc
Q 006022 85 MMGV 88 (664)
Q Consensus 85 LmGs 88 (664)
|+..
T Consensus 150 l~~r 153 (159)
T 3rt3_B 150 MNLR 153 (159)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9853
No 72
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.53 E-value=9.6e-08 Score=87.35 Aligned_cols=73 Identities=15% Similarity=0.191 Sum_probs=63.5
Q ss_pred eeEEEEE--ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 7 MLKVSAI--WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 7 ~i~ItVk--~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
.++|+|+ -.|++++|+++++.||.+||++|+..++||+++|.|+| .|+.|++. -||.++|+++|..|-
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy---~GKiLKD~-------eTL~~~gIk~g~TIh 84 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRY---SGKILKNN-------ETLVQHGVKPQEIVQ 84 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEE---TTEEECSS-------CCHHHHSCCSSCEEE
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEE---CCeEcCCc-------chHHHcCCCCCCEEE
Confidence 5677765 45889999999999999999999999999999999999 79888742 468999999999999
Q ss_pred Eeccc
Q 006022 85 MMGVS 89 (664)
Q Consensus 85 LmGs~ 89 (664)
|+=.+
T Consensus 85 Lvi~s 89 (118)
T 2daf_A 85 VEIFS 89 (118)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 87654
No 73
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=98.53 E-value=1.2e-07 Score=78.79 Aligned_cols=71 Identities=18% Similarity=0.317 Sum_probs=62.1
Q ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 7 MLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 7 ~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.+.|.|+. .|+++.|++.+++||.+||.+|++.+|+|++.|+|++ .|..|.+ ..+|+++++.+|..|-|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~---~G~~L~d-------~~tl~~~~i~~~~~i~l 72 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRIAD-------NHTPKELGMEEEDVIEV 72 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TCCHHHHTCCTTEEEEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE---CCEEeCC-------CCCHHHcCCCCCCEEEE
Confidence 57899984 7899999999999999999999999999999999999 6765552 25688999999999988
Q ss_pred ec
Q 006022 86 MG 87 (664)
Q Consensus 86 mG 87 (664)
+-
T Consensus 73 ~~ 74 (79)
T 2uyz_B 73 YQ 74 (79)
T ss_dssp EE
T ss_pred EE
Confidence 74
No 74
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.52 E-value=4.4e-08 Score=87.97 Aligned_cols=74 Identities=19% Similarity=0.279 Sum_probs=63.0
Q ss_pred CCeeEEEE-EECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC---------------CceEeeccCCCCCCCCCCCcccc
Q 006022 5 GSMLKVSA-IWRGKKYVVEVNSGSPLKELGHELQKLTDVKAD---------------TMRFIVPQNKGSKLLSPFSDEHS 68 (664)
Q Consensus 5 ~~~i~ItV-k~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe---------------~QKLL~pk~KG~~Lk~p~sD~~~ 68 (664)
+..+.|+| +..|++++|+|++++||.+||++|++.+++||+ .|+|+| .|+.|.++
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~---~Gk~L~dD------ 75 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS---AGEKLTED------ 75 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEES---SSCEECCS------
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEe---CCcCccCC------
Confidence 34688999 579999999999999999999999999999984 469998 78766632
Q ss_pred cccccccccCCCceEEEec
Q 006022 69 SLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 69 ~ltL~~~glk~G~KImLmG 87 (664)
..+|++++|++|..|.||=
T Consensus 76 ~~tL~dygI~~g~~l~lv~ 94 (105)
T 1v2y_A 76 RKKLRDYGIRNRDEVSFIK 94 (105)
T ss_dssp SSBHHHHTCCSSEEEEEEE
T ss_pred cCCHHHcCCCCCCEEEEEe
Confidence 2578999999999999874
No 75
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.51 E-value=1e-07 Score=84.40 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=57.6
Q ss_pred CeeEEEEEEC-CE--EEEEEeCCCCCHHHHHHHHHHH-hCCCC-CCceEeeccCCCCCCCCCCCccccccccccc--ccC
Q 006022 6 SMLKVSAIWR-GK--KYVVEVNSGSPLKELGHELQKL-TDVKA-DTMRFIVPQNKGSKLLSPFSDEHSSLSLQEV--SII 78 (664)
Q Consensus 6 ~~i~ItVk~~-Gk--~~~i~l~~d~TV~dLK~~Ie~l-TgVPp-e~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~--glk 78 (664)
..|.|+|++- |+ .++|++++++||.+||++|++. .|+|| +.||||| +|+.|.+ ..+|+++ ++.
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy---~Gk~L~D-------~~tL~~y~~~I~ 91 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY---SGRLLPD-------HLQLKDILRKQD 91 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE---TTEEECT-------TSBTHHHHTTTC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEE---CCEECCC-------CCCHHHHhcCCC
Confidence 3689999984 44 4678889999999999999986 57665 9999999 7877663 2568889 999
Q ss_pred CCceEEEe
Q 006022 79 EGKSIRMM 86 (664)
Q Consensus 79 ~G~KImLm 86 (664)
+|..|.|+
T Consensus 92 ~~~tihLv 99 (99)
T 2kdb_A 92 EYHMVHLV 99 (99)
T ss_dssp SEEEEEEC
T ss_pred CCCEEEeC
Confidence 99999875
No 76
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.51 E-value=1.9e-07 Score=85.59 Aligned_cols=73 Identities=10% Similarity=0.055 Sum_probs=62.7
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccC-------C
Q 006022 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSII-------E 79 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk-------~ 79 (664)
.|-|.|.++++++.|++.+++||.+||..|+..+||||+.|+|++ .|+.|.+ ..+|++++|. .
T Consensus 2 ~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~---~Gk~LeD-------~~TLsdy~I~~~~a~~q~ 71 (118)
T 2fnj_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYK---DDQLLDD-------GKTLGECGFTSQTARPQA 71 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBHHHHTCCTTTSBTTB
T ss_pred cEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEE---CCeECCC-------CCCHHHcCcccccccCCC
Confidence 467889998889999999999999999999999999999999998 6765532 2578999999 7
Q ss_pred CceEEEeccc
Q 006022 80 GKSIRMMGVS 89 (664)
Q Consensus 80 G~KImLmGs~ 89 (664)
++.|-|+-..
T Consensus 72 ~stL~L~lr~ 81 (118)
T 2fnj_B 72 PATVGLAFRA 81 (118)
T ss_dssp CEEEEEEEBS
T ss_pred CCEEEEEecC
Confidence 8998887654
No 77
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.50 E-value=2.2e-07 Score=85.52 Aligned_cols=72 Identities=17% Similarity=0.312 Sum_probs=61.9
Q ss_pred eeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 7 MLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 7 ~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.+.|.|+ +.|+++.++++++.||.+||.+|++.+|+|+++|+|++ +|+.|.+ ..+|+++++++|.+|.|
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~---~g~~L~d-------~~tL~~~~i~~~~~i~l 145 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHL 145 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTGGGTCCTTCEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEE---CCEECCC-------CCCHHHcCCCCCCEEEE
Confidence 4677787 47899999999999999999999999999999999999 6765542 25689999999999999
Q ss_pred ecc
Q 006022 86 MGV 88 (664)
Q Consensus 86 mGs 88 (664)
+..
T Consensus 146 ~~r 148 (152)
T 3b08_A 146 VLR 148 (152)
T ss_dssp EEC
T ss_pred EEe
Confidence 753
No 78
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.48 E-value=2.5e-07 Score=97.11 Aligned_cols=73 Identities=16% Similarity=0.311 Sum_probs=64.2
Q ss_pred CCeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
..++.|.|++ .|++++|++++++||.+||++|++.+|||+++|||++ +|+.|.+ ..+|++++|++|.+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~---~Gk~L~D-------~~TLsdygI~~gstL 300 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTL 300 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEE---TTEECCT-------TSBTGGGTCCTTCEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEe---CCeecCC-------CCCHHHcCCCCCCEE
Confidence 3578999998 5899999999999999999999999999999999999 6765542 256899999999999
Q ss_pred EEec
Q 006022 84 RMMG 87 (664)
Q Consensus 84 mLmG 87 (664)
.|+.
T Consensus 301 ~Lvl 304 (307)
T 3ai5_A 301 HLVL 304 (307)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 9875
No 79
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=98.43 E-value=3.1e-07 Score=80.23 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=63.0
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..|.|.|+. .|+++.|.+.+++||.+||..|++.+|||++.|+|+| .|..|.+ ..||+++++..|..|-
T Consensus 20 ~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif---~Gk~L~d-------~~tl~dy~i~~g~~I~ 89 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRIAD-------NHTPKELGMEEEDVIE 89 (97)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TCCHHHHTCCTTCEEE
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEE---CCeEcCC-------CCCHHHCCCCCCCEEE
Confidence 468999985 7899999999999999999999999999999999999 6765552 2568899999999998
Q ss_pred Eec
Q 006022 85 MMG 87 (664)
Q Consensus 85 LmG 87 (664)
|+-
T Consensus 90 l~~ 92 (97)
T 1wyw_B 90 VYQ 92 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 80
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.42 E-value=4.8e-07 Score=82.89 Aligned_cols=72 Identities=11% Similarity=0.061 Sum_probs=62.1
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCC-------
Q 006022 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIE------- 79 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~------- 79 (664)
.+-|.|++++.++.+++.+++||.+||..|+..+||||+.|+|++ .|+.|.+ ..||+++||..
T Consensus 2 ~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~---~Gk~LeD-------~kTL~dy~I~~~ta~~q~ 71 (118)
T 4ajy_B 2 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYK---DDQLLDD-------GKTLGECGFTSQTARPQA 71 (118)
T ss_dssp EEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEE---TTEECCT-------TSBTTTTTCCGGGSBTTB
T ss_pred ceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEe---CCeECCC-------cCCHHHcCCCcCcccCCC
Confidence 356899999999999999999999999999999999999999998 5655542 25789999999
Q ss_pred CceEEEecc
Q 006022 80 GKSIRMMGV 88 (664)
Q Consensus 80 G~KImLmGs 88 (664)
+..|-|+=.
T Consensus 72 ~atl~Lvlr 80 (118)
T 4ajy_B 72 PATVGLAFR 80 (118)
T ss_dssp CEEEEEEEC
T ss_pred CCEEEEEEe
Confidence 999888733
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.41 E-value=4e-07 Score=86.81 Aligned_cols=71 Identities=17% Similarity=0.326 Sum_probs=61.3
Q ss_pred eeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 7 MLKVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 7 ~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
.+.|.|+ +.|+++++.+.++.||.+||.+|+..+|||++.|+|++ +|..|.+ ..+|+++++++|..|.|
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~L~D-------~~tL~~y~i~~g~tl~l 165 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHL 165 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEE---TTEECCT-------TSBSGGGTCCTTCEEEE
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEE---CCccCCC-------CCcHHHhCCCCCCEEEE
Confidence 3455665 88999999999999999999999999999999999999 6765542 25789999999999999
Q ss_pred ec
Q 006022 86 MG 87 (664)
Q Consensus 86 mG 87 (664)
+.
T Consensus 166 ~~ 167 (172)
T 3u30_A 166 VL 167 (172)
T ss_dssp CC
T ss_pred EE
Confidence 75
No 82
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.41 E-value=3.1e-08 Score=94.20 Aligned_cols=70 Identities=19% Similarity=0.319 Sum_probs=0.0
Q ss_pred EEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEec
Q 006022 9 KVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMG 87 (664)
Q Consensus 9 ~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmG 87 (664)
.|.|++ .|++++|++++++||.+||.+|++.+|||++.|+|++ +|..|.+ ..+|++++|.+|..|.|+.
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~---~Gk~L~D-------~~tL~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIF---AGKQLED-------GRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEE---CCEEccc-------cCcHHHcCCCCCCEEEEEe
Confidence 477777 6899999999999999999999999999999999999 6765542 2568999999999999875
Q ss_pred c
Q 006022 88 V 88 (664)
Q Consensus 88 s 88 (664)
.
T Consensus 72 r 72 (152)
T 3u5c_f 72 R 72 (152)
T ss_dssp -
T ss_pred e
Confidence 3
No 83
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.35 E-value=1e-06 Score=76.87 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=63.0
Q ss_pred CCeeEEEEEE----CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccC-CCCCCCCCCCcccccccccccccCC
Q 006022 5 GSMLKVSAIW----RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQN-KGSKLLSPFSDEHSSLSLQEVSIIE 79 (664)
Q Consensus 5 ~~~i~ItVk~----~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~-KG~~Lk~p~sD~~~~ltL~~~glk~ 79 (664)
+..|+|+|++ .|+.+++.|+.+.||++||..|+.+||+|+..|||.+-.. .+. ...++.++ ..+|..+++.+
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~-~~~~L~~d--~~~L~~y~i~~ 83 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPG-REIELEND--LQPLQFYSVEN 83 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCS-CEEECCCS--SSBSGGGTCCT
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCc-eeeccCCC--cccHhhcCCCC
Confidence 3579999986 4778899999999999999999999999999999997311 111 11123233 35688999999
Q ss_pred CceEEEeccc
Q 006022 80 GKSIRMMGVS 89 (664)
Q Consensus 80 G~KImLmGs~ 89 (664)
|..|.+.-+.
T Consensus 84 G~~I~V~d~~ 93 (97)
T 1wjn_A 84 GDCLLVRWSG 93 (97)
T ss_dssp TCEEEEECCS
T ss_pred CCEEEEEecC
Confidence 9999887643
No 84
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=1.4e-06 Score=75.37 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=56.9
Q ss_pred eeEEEEEEC-CEE--EEE-EeCCCCCHHHHHHHHHHH-hCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCc
Q 006022 7 MLKVSAIWR-GKK--YVV-EVNSGSPLKELGHELQKL-TDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 7 ~i~ItVk~~-Gk~--~~i-~l~~d~TV~dLK~~Ie~l-TgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
++.|+|+.. |++ +.| ++++++||.+||+.|++. .||||++|+|++.. +|+.|.+ ..+|+++++.+|.
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~-~Gk~L~D-------~~tL~~y~i~~~s 81 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDP-KGKSLKD-------EDVLQKLPVGTTA 81 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESST-TSCCCCT-------TCBTTTSSCCSEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecC-CCcCcCC-------CCCHHHcCCCCCC
Confidence 488999876 344 368 999999999999999995 89999999998732 5765542 2568899999999
Q ss_pred eEEE
Q 006022 82 SIRM 85 (664)
Q Consensus 82 KImL 85 (664)
+|.+
T Consensus 82 tl~~ 85 (88)
T 2dzj_A 82 TLYF 85 (88)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
No 85
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=98.25 E-value=1.3e-06 Score=80.70 Aligned_cols=68 Identities=16% Similarity=0.279 Sum_probs=56.9
Q ss_pred CeeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH------HhCCC--CCCceEeeccCCCCCCCCCCCcccccccccccc
Q 006022 6 SMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQK------LTDVK--ADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVS 76 (664)
Q Consensus 6 ~~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~------lTgVP--pe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~g 76 (664)
+.|.|+|+ ..|++++|++++++||.+||+.|++ ..|+| ++.||||| .|+.|.+ ..+|++++
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy---~GK~LeD-------~~TL~~y~ 85 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFLHG-------NVTLGALK 85 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEES---SSSEEES-------SCBTGGGC
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEE---CCcCCCC-------CCcHHHcC
Confidence 46888887 4689999999999999999999999 77884 89999999 7876653 25688999
Q ss_pred cCCCceE
Q 006022 77 IIEGKSI 83 (664)
Q Consensus 77 lk~G~KI 83 (664)
+..|..+
T Consensus 86 I~~~~~~ 92 (125)
T 2gow_A 86 LPFGKTT 92 (125)
T ss_dssp CCTTSEE
T ss_pred CCCCCce
Confidence 9987743
No 86
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.25 E-value=2.3e-06 Score=78.05 Aligned_cols=72 Identities=15% Similarity=0.311 Sum_probs=58.7
Q ss_pred CCeeEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH------HhCC--CCCCceEeeccCCCCCCCCCCCccccccccccc
Q 006022 5 GSMLKVSAI-WRGKKYVVEVNSGSPLKELGHELQK------LTDV--KADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEV 75 (664)
Q Consensus 5 ~~~i~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~------lTgV--Ppe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~ 75 (664)
.+.|.|+|+ ..|++++|++.+++||.+||+.|++ ..++ |++.||||| .|+.|.+ ..+|+++
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy---~GK~LeD-------~~TL~~y 83 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIY---QGRFLHG-------NVTLGAL 83 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEE---TTEEECS-------SCBTTTT
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEE---CCcCCCC-------CCcHHHc
Confidence 357899998 4899999999999999999999999 6675 699999999 7876653 2568889
Q ss_pred ccCCCce--EEEe
Q 006022 76 SIIEGKS--IRMM 86 (664)
Q Consensus 76 glk~G~K--ImLm 86 (664)
+|..|.. |+|+
T Consensus 84 ~I~~~~~~tlhLv 96 (116)
T 1wgh_A 84 KLPFGKTTVMHLV 96 (116)
T ss_dssp TCCSSCEEEEEEE
T ss_pred CCCCCCceEEEEE
Confidence 9987754 4444
No 87
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=98.22 E-value=3.6e-06 Score=75.63 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=55.0
Q ss_pred eEEEEEEC---CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCccccccccccccc-CCCceE
Q 006022 8 LKVSAIWR---GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSI-IEGKSI 83 (664)
Q Consensus 8 i~ItVk~~---Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~gl-k~G~KI 83 (664)
+.|+|+=- +.+++|++.+++||.+||++|++..|+||+.|||++ |+.+..+ ..+|.++|+ .+|..+
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~----ggkll~D------~~TL~~ygI~~~G~t~ 94 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVI----GQRLARD------QETLHSHGVRQNGDSA 94 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEE----TTEEECT------TCBTGGGTCCSTTCEE
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEec----cCeEccC------cCcHHHcCCCCCCCEE
Confidence 44444442 378889999999999999999999999999999888 4434322 357889999 499999
Q ss_pred EEec
Q 006022 84 RMMG 87 (664)
Q Consensus 84 mLmG 87 (664)
.|+-
T Consensus 95 hL~l 98 (105)
T 4dbg_A 95 YLYL 98 (105)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8863
No 88
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.13 E-value=6.4e-06 Score=73.38 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=59.1
Q ss_pred eeEEEEEECCEEEEEEeC-CCCCHHHHHHHHHHHhCCCCCCceEeeccCCCC-----------CCCCCCCcccccccccc
Q 006022 7 MLKVSAIWRGKKYVVEVN-SGSPLKELGHELQKLTDVKADTMRFIVPQNKGS-----------KLLSPFSDEHSSLSLQE 74 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~-~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~-----------~Lk~p~sD~~~~ltL~~ 74 (664)
.+.|.|+...-++.|+++ +++||.+||++|++.++||++.|+|++ .|+ .+. ...+ +..+|++
T Consensus 7 ~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~---~~~~~~~k~~~~~~~l~-~~l~--d~~tL~~ 80 (107)
T 1wf9_A 7 GTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLST---NRNLLLAKSPSDFLAFT-DMAD--PNLRISS 80 (107)
T ss_dssp CEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBS---SGGGGTCCSHHHHTTCC-SSCC--TTCBGGG
T ss_pred eEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEE---CCccccccCcccccccc-ccCC--CCCCHHH
Confidence 466888876556689999 999999999999999999999999976 232 110 0011 2357899
Q ss_pred cccCCCceEEEeccc
Q 006022 75 VSIIEGKSIRMMGVS 89 (664)
Q Consensus 75 ~glk~G~KImLmGs~ 89 (664)
+||+.|..|.|.-..
T Consensus 81 ~gi~~G~~L~l~~~~ 95 (107)
T 1wf9_A 81 LNLAHGSMVYLAYEG 95 (107)
T ss_dssp TCCCTTCEEECCCSS
T ss_pred CCCCCCCEEEEEeCC
Confidence 999999999987553
No 89
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.78 E-value=3e-05 Score=71.73 Aligned_cols=66 Identities=11% Similarity=0.167 Sum_probs=53.2
Q ss_pred CeeEEEE-EECCEEE-EEEeCCCCCHHHHHHHH-----HHHhCCCC--CCceEeeccCCCCCCCCCCCcccccccccccc
Q 006022 6 SMLKVSA-IWRGKKY-VVEVNSGSPLKELGHEL-----QKLTDVKA--DTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVS 76 (664)
Q Consensus 6 ~~i~ItV-k~~Gk~~-~i~l~~d~TV~dLK~~I-----e~lTgVPp--e~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~g 76 (664)
+.+.|+| ...|+.+ .+++++++||.+||+.| ++..|+|+ +.||||| .|+.|.+ ..+|++++
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy---~GK~LeD-------~~TLsdy~ 84 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLIS---AGKVLEN-------SKTVKDYR 84 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE---TTEECCT-------TSBGGGGS
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEE---CCeECcC-------CCcHHHcC
Confidence 4677888 4567677 69999999999999999 55678987 8999999 6876653 25788999
Q ss_pred cCCCc
Q 006022 77 IIEGK 81 (664)
Q Consensus 77 lk~G~ 81 (664)
|..|.
T Consensus 85 I~~~~ 89 (126)
T 1se9_A 85 SPVSN 89 (126)
T ss_dssp CCTTS
T ss_pred CCcCC
Confidence 99884
No 90
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=97.40 E-value=2.3e-05 Score=77.13 Aligned_cols=49 Identities=14% Similarity=0.269 Sum_probs=0.0
Q ss_pred EEEEE-ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCC
Q 006022 9 KVSAI-WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLL 60 (664)
Q Consensus 9 ~ItVk-~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk 60 (664)
.|.|+ ..|++++|++.+++||.+||..|++.+|||++.|+|++ .|..|.
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf---~GK~Le 51 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVN---NGFIAP 51 (189)
T ss_dssp -----------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEe---cCeECC
Confidence 35565 46899999999999999999999999999999999999 676554
No 91
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.26 E-value=0.00028 Score=60.00 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=58.3
Q ss_pred CCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeecc-CCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQ-NKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk-~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
..++.|.|....-.+.|++++++|+.+|+.+|++.|+|+++.|.|.+-. .++. +. .+ ...+|+++||+.|..|
T Consensus 2 ~~~m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~-l~--~~---~~~~l~~lgl~hGd~l 75 (80)
T 2pjh_A 2 AESIIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGE-IT--AS---SSKSLHLLKIKHGDLL 75 (80)
T ss_dssp CCCCCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGG-SS--SC---CCCTTTTTCCCTTCCE
T ss_pred CCcEEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCc-cc--CC---CCCCHHHcCCCCCCEE
Confidence 4557799999988999999999999999999999999999999887521 1232 11 11 2356889999999887
Q ss_pred EE
Q 006022 84 RM 85 (664)
Q Consensus 84 mL 85 (664)
.+
T Consensus 76 ~l 77 (80)
T 2pjh_A 76 FL 77 (80)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 92
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.17 E-value=0.0007 Score=59.71 Aligned_cols=67 Identities=15% Similarity=0.188 Sum_probs=48.9
Q ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCC-CCCCCcccccccccccccCCCceEEEeccc
Q 006022 15 RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKL-LSPFSDEHSSLSLQEVSIIEGKSIRMMGVS 89 (664)
Q Consensus 15 ~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~L-k~p~sD~~~~ltL~~~glk~G~KImLmGs~ 89 (664)
.++.|.|.+.++.||..||++|++.|||||+.|.||+ .|+.+ ..| +. ....+ ..-.+-.+|||+...
T Consensus 22 ~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~---eg~~l~l~p--~~-~a~~~--p~Tt~~~Pl~L~s~~ 89 (94)
T 4efo_A 22 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIY---EGRRLVLEP--GR-LAQHF--PKTTEENPIFVVSLE 89 (94)
T ss_dssp TTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEE---TTEEECCCT--TC-BGGGS--CCCBTTBCEEEEECC
T ss_pred cceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHh---CCCccccCC--CC-ccccC--CCCCCCCCEEEEecC
Confidence 6888999999999999999999999999999999999 56322 222 11 11111 122456788888754
No 93
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=96.90 E-value=0.0035 Score=52.81 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=60.8
Q ss_pred CCeeEEEEEE-CCE-EEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCce
Q 006022 5 GSMLKVSAIW-RGK-KYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (664)
Q Consensus 5 ~~~i~ItVk~-~Gk-~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~K 82 (664)
++.|+|.|+- .|+ .+.|.+..++++..|+.++++..|++++.|+|+| .|..+.. ..|..++++..|-.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l~~-------~~Tp~~l~medgD~ 74 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFF---DGTKLSG-------KELPADLGLESGDL 74 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEE---TTEECCS-------CCCHHHHTCCTTCE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEcCC-------CCCHHHcCCCCCCE
Confidence 3568899986 664 7899999999999999999999999999999999 6765542 24567789999998
Q ss_pred EEEec
Q 006022 83 IRMMG 87 (664)
Q Consensus 83 ImLmG 87 (664)
|-++|
T Consensus 75 Idv~~ 79 (79)
T 3a4r_A 75 IEVWG 79 (79)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 87775
No 94
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=96.84 E-value=0.0023 Score=55.90 Aligned_cols=72 Identities=11% Similarity=0.227 Sum_probs=59.5
Q ss_pred CCeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
++.|+|.|+- .|+.+.|.+.+++++..|+.++++..|++++.|+|+| .|..+.. ..|..++++..|-.|
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l~~-------~~Tp~dl~medgD~I 74 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINE-------TDTPAQLEMEDEDTI 74 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TCCTTTTTCCTTCEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEE---CCEEcCC-------CCCHHHcCCCCCCEE
Confidence 3568999984 7888999999999999999999999999999999999 6765542 135677888888887
Q ss_pred EEe
Q 006022 84 RMM 86 (664)
Q Consensus 84 mLm 86 (664)
-++
T Consensus 75 dv~ 77 (94)
T 2io1_B 75 DVF 77 (94)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 95
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=96.73 E-value=0.0046 Score=51.02 Aligned_cols=69 Identities=12% Similarity=0.238 Sum_probs=56.9
Q ss_pred eEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
|+|.|+- .|+.+.+.+.+++++..|+.+.++..|++++.|+|+| .|..+.. ..|..++++..|-.|-++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l~~-------~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINE-------TDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEE---TTEECCT-------TCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEcCC-------CCCHHHcCCCCCCEEEEE
Confidence 6788884 6888999999999999999999999999999999999 6765542 134567788888877653
No 96
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=96.63 E-value=0.0055 Score=53.31 Aligned_cols=72 Identities=11% Similarity=0.220 Sum_probs=59.4
Q ss_pred CCeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
++.|+|.|+- .|+.+.|.+.+++++..|+.++++..|++++.|+|+| .|..+... .|..++++..|-.|
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~F---dG~~l~~~-------~Tp~dl~medgD~I 72 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINET-------DTPAQLEMEDEDTI 72 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEE---TTEECCTT-------CCTTTTTCCTTEEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEcCCC-------CCHHHcCCCCCCEE
Confidence 4578999984 7888999999999999999999999999999999999 67655421 34567788888877
Q ss_pred EEe
Q 006022 84 RMM 86 (664)
Q Consensus 84 mLm 86 (664)
-++
T Consensus 73 dv~ 75 (91)
T 2io0_B 73 DVF 75 (91)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 97
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=96.30 E-value=0.017 Score=51.43 Aligned_cols=71 Identities=11% Similarity=0.228 Sum_probs=58.9
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..|+|.|+- .|+.+.|.+..++++..|+.++++..|+++..|+|+| .|..|.. ..|..++++..|-.|-
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~F---dG~~l~~-------~~Tp~dl~medgD~Id 92 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINE-------TDTPAQLEMEDEDTID 92 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEES---SSSBCCT-------TSCTTTTTCCTTEEEE
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEcCC-------CCCHHHcCCCCCCEEE
Confidence 468899985 6778899999999999999999999999999999999 6765542 1345677888888776
Q ss_pred Ee
Q 006022 85 MM 86 (664)
Q Consensus 85 Lm 86 (664)
++
T Consensus 93 v~ 94 (104)
T 1wz0_A 93 VF 94 (104)
T ss_dssp EC
T ss_pred EE
Confidence 65
No 98
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=96.30 E-value=0.011 Score=53.17 Aligned_cols=73 Identities=18% Similarity=0.319 Sum_probs=60.2
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..|+|.|+- .|+.+.|.+..++++..|+.++++..|++++.|+|+| .|..+.. ..|..++++..|-.|-
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiF---dG~~L~~-------~~Tp~dl~mEDgD~Id 94 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLF---DGTPIDE-------TKTPEELGMEDDDVID 94 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEES---SSCBCCS-------SSHHHHHHCSSEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEE---CCEEcCC-------CCCHHHcCCCCCCEEE
Confidence 469999986 6778899999999999999999999999999999999 6765542 2456778888888877
Q ss_pred Eecc
Q 006022 85 MMGV 88 (664)
Q Consensus 85 LmGs 88 (664)
++-.
T Consensus 95 v~~~ 98 (110)
T 2k8h_A 95 AMVE 98 (110)
T ss_dssp EECC
T ss_pred EEEc
Confidence 6543
No 99
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=96.20 E-value=0.012 Score=52.69 Aligned_cols=71 Identities=13% Similarity=0.299 Sum_probs=59.2
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
..|+|.|+-.|+.+.|.+..++++..|+.++++..|+++..|+|+| .|..+.. ..|..++++..|-.|-+
T Consensus 30 ~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~F---dG~rl~~-------~~Tp~dl~medgD~Idv 99 (106)
T 2eke_C 30 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQA-------DQTPEDLDMEDNDIIEA 99 (106)
T ss_dssp SEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TCCTTTTTCCTTEEEEE
T ss_pred CeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEE---CCeEcCC-------CCCHHHcCCCCCCEEEE
Confidence 4688988878888999999999999999999999999999999999 6765542 13456778888887766
Q ss_pred e
Q 006022 86 M 86 (664)
Q Consensus 86 m 86 (664)
+
T Consensus 100 ~ 100 (106)
T 2eke_C 100 H 100 (106)
T ss_dssp E
T ss_pred E
Confidence 5
No 100
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=96.06 E-value=0.018 Score=50.07 Aligned_cols=71 Identities=11% Similarity=0.228 Sum_probs=58.4
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..|+|.|+- .|+.+.|.+..++++..|+.++++..|++++.|+|+| .|..+.. ..|..++++..|-.|-
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~f---dG~~l~~-------~~Tp~dl~medgD~Id 85 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF---DGQPINE-------TDTPAQLEMEDEDTID 85 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEE---TTEECCT-------TCCTTTTTCCTTEEEE
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEE---CCEEcCC-------CCCHHHcCCCCCCEEE
Confidence 478888885 6778889999999999999999999999999999999 6765542 1345677888888776
Q ss_pred Ee
Q 006022 85 MM 86 (664)
Q Consensus 85 Lm 86 (664)
++
T Consensus 86 v~ 87 (93)
T 2d07_B 86 VF 87 (93)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 101
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.2 Score=49.66 Aligned_cols=72 Identities=13% Similarity=0.291 Sum_probs=59.2
Q ss_pred CCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
+.-|+|.|+..|+...|.+-.++++..|+.+.++..|+++..++|+| .|..+.. ..|..++++..|-.|=
T Consensus 27 ~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~F---dG~rI~~-------~~TP~dL~MEdgD~Id 96 (200)
T 3pge_A 27 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQA-------DQTPEDLDMEDNDIIE 96 (200)
T ss_dssp CCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEE---TTEECCT-------TCCTTTTTCCTTEEEE
T ss_pred CCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEE---CCEEcCC-------CCCHHHcCCCCCCEEE
Confidence 34699999999999999999999999999999999999999999999 6765442 1345667777777766
Q ss_pred Ee
Q 006022 85 MM 86 (664)
Q Consensus 85 Lm 86 (664)
++
T Consensus 97 v~ 98 (200)
T 3pge_A 97 AH 98 (200)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 102
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=92.37 E-value=0.42 Score=43.41 Aligned_cols=71 Identities=18% Similarity=0.331 Sum_probs=57.9
Q ss_pred CeeEEEEEEC-CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIWR-GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~~-Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
..|+|.|+-. |+...|.+..++++..|+.+.++..|+++..++|+| .|..+.. ..|..++++..|-.|-
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlF---DG~rI~~-------~~TP~dL~MEDgD~Id 108 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLF---EGQRIAD-------NHTPKELGMEEEDVIE 108 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEE---TTEECCT-------TCCTTTTTCCTTCEEE
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEE---CCeECCC-------CCCHHHcCCCCCCEEE
Confidence 4688888874 677789999999999999999999999999999999 6765442 1345667888888886
Q ss_pred Ee
Q 006022 85 MM 86 (664)
Q Consensus 85 Lm 86 (664)
++
T Consensus 109 V~ 110 (115)
T 3kyd_D 109 VY 110 (115)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 103
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.3 Score=48.43 Aligned_cols=73 Identities=11% Similarity=0.254 Sum_probs=60.7
Q ss_pred CCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
+.-|+|.|+-.|+.+.|.+..++++..|+...++..|+++..++|+| .|..+.. ..|..++++..|-.|=
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLF---DGqRI~~-------ddTPeDLdMEDGDtID 124 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLY---DGIEIQA-------DQTPEDLDMEDNDIIE 124 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEE---TTEECCS-------SCCTTTTTCCTTEEEE
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEE---CCeecCC-------CCCHHHcCCCCCCEEE
Confidence 34699999999999999999999999999999999999999999999 6764442 1345667888888887
Q ss_pred Eec
Q 006022 85 MMG 87 (664)
Q Consensus 85 LmG 87 (664)
++-
T Consensus 125 V~l 127 (207)
T 3tix_A 125 AHR 127 (207)
T ss_dssp ECC
T ss_pred EEE
Confidence 653
No 104
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=88.94 E-value=0.62 Score=39.87 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=54.0
Q ss_pred CeeEEEEE---ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCce-E-eeccCCCCCCCCCCCcccccccccccccCCC
Q 006022 6 SMLKVSAI---WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMR-F-IVPQNKGSKLLSPFSDEHSSLSLQEVSIIEG 80 (664)
Q Consensus 6 ~~i~ItVk---~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QK-L-L~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G 80 (664)
+-|+|||- |++++|++.+|..-||+.|...+.+..+++..+-+ - |-..+||..|.. ...|++.++..|
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~-------~~~L~d~~ItnG 75 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSG-------ECKLSDCGITNG 75 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEET-------TSBTGGGTCCTT
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcC-------CCEEeeCCcCCC
Confidence 35778887 59999999999999999999999999999764333 1 211246654432 134788899999
Q ss_pred ceEEE
Q 006022 81 KSIRM 85 (664)
Q Consensus 81 ~KImL 85 (664)
-.|-+
T Consensus 76 D~Lei 80 (81)
T 2bps_A 76 DRLEI 80 (81)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88754
No 105
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=87.31 E-value=2.2 Score=35.79 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=54.0
Q ss_pred CCeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEee--ccCCCCCCCCCCCcccccccccccccCCCc
Q 006022 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV--PQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 5 ~~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~--pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
.....|.|.. +|+...-.++.+.||.+|..-|.. .+.++...+|+. |+ | .+. . .| ...||.++||.++.
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPr-k--~l~-~-~d--~~~TL~e~gL~p~a 76 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPR-R--DVT-Q-LD--PNKSLLEVKLFPQE 76 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSC-C--BGG-G-SC--TTSBTTTTTCCSEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCC-C--CCc-C-CC--CCCCHHHCCCCCCC
Confidence 3467788887 566667789999999999999998 678888889984 32 1 121 0 12 24689999999988
Q ss_pred eEEE
Q 006022 82 SIRM 85 (664)
Q Consensus 82 KImL 85 (664)
.|++
T Consensus 77 ~L~v 80 (84)
T 3qx1_A 77 TLFL 80 (84)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 106
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.71 E-value=1.9 Score=37.07 Aligned_cols=46 Identities=9% Similarity=0.237 Sum_probs=41.7
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
..+.|+|+|. -++.|.++.+.+..+|...|.+.+.++++.-+|-|.
T Consensus 4 ~~~~VKV~~~-~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk 49 (83)
T 1oey_A 4 MAYTLKVHYK-YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR 49 (83)
T ss_dssp SCEEEEEESS-SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred CcEEEEEEEE-EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEee
Confidence 3589999999 577789999999999999999999999999999884
No 107
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=84.50 E-value=4.6 Score=35.45 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=57.2
Q ss_pred CCeeEEEEEE-CC-EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCce
Q 006022 5 GSMLKVSAIW-RG-KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (664)
Q Consensus 5 ~~~i~ItVk~-~G-k~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~K 82 (664)
...|+|+|+- .| +...|.+..++++.-|..+.++..|+++..-+|+| .|..+. + ..|-.++++..|-.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~F---DG~rI~-~------~~TP~dLdMEDgD~ 92 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFF---DGTKLS-G------RELPADLGMESGDL 92 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEE---TTEECC-S------CSCHHHHTCCTTEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEE---CCEEcC-C------CCCHHHcCCCCCCE
Confidence 3578888887 44 36789999999999999999999999999999999 676443 2 12345678888877
Q ss_pred EEEec
Q 006022 83 IRMMG 87 (664)
Q Consensus 83 ImLmG 87 (664)
|-++|
T Consensus 93 IDv~~ 97 (97)
T 2jxx_A 93 IEVWG 97 (97)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77665
No 108
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=81.48 E-value=3 Score=36.26 Aligned_cols=44 Identities=20% Similarity=0.434 Sum_probs=39.1
Q ss_pred CCCCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCC
Q 006022 3 DLGSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADT 46 (664)
Q Consensus 3 ~~~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~ 46 (664)
+++..++|++.|+|..+.+.++++.|..+|.++|.+.++++...
T Consensus 2 ~~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~ 45 (89)
T 1vd2_A 2 PLGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQ 45 (89)
T ss_dssp CCSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSC
T ss_pred CCCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 34567999999999999999999999999999999999987433
No 109
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=80.86 E-value=4.6 Score=39.84 Aligned_cols=72 Identities=11% Similarity=0.212 Sum_probs=52.7
Q ss_pred eEEEEEECCEE---EEEEeCCCCCHHHHHHHHHHHhCCCCC-CceEee--ccCCCCCCCCCCCcccccccccccccCCCc
Q 006022 8 LKVSAIWRGKK---YVVEVNSGSPLKELGHELQKLTDVKAD-TMRFIV--PQNKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 8 i~ItVk~~Gk~---~~i~l~~d~TV~dLK~~Ie~lTgVPpe-~QKLL~--pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
+.|++....+. +++.+...+|+.+|+..+.++++|+++ .-+|-. ...+...|.+ . ..||.+++|..|+
T Consensus 128 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~----~--~~tl~~~~l~~~Q 201 (217)
T 4a3p_A 128 TELKLCENGNMNNVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNK----P--DSTIQDAGLYQGQ 201 (217)
T ss_dssp EEEEEEETTEEEEEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCC----T--TSBHHHHTCCTTC
T ss_pred cEEEEEecCCCCcceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCC----C--CCCHHHhCCCCCC
Confidence 45667777655 567889999999999999999999998 477743 2222222221 1 3678899999999
Q ss_pred eEEE
Q 006022 82 SIRM 85 (664)
Q Consensus 82 KImL 85 (664)
.|.|
T Consensus 202 ~ill 205 (217)
T 4a3p_A 202 VLVI 205 (217)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9876
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=80.84 E-value=2.3 Score=37.14 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=54.7
Q ss_pred eEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 8 LKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 8 i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+.|+|.. +|+.++|.+.++.|+.++=++-++.+|+.++.--|.+ +++ ..+ ..+.+.-.||.+|.|+.|+
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh---~~k-~lD------LSlpfRlsgLpnnAkLELv 79 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKF---QRT-VLD------LSLQWRFANLPNNAKLEMV 79 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEE---TTE-EES------SSCBHHHHCCCSSCEEEEE
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEe---CCE-ecc------ccceeEecCCCCCCEEEEE
Confidence 3677764 8889999999999999988888899999987666666 333 222 1244555799999999998
Q ss_pred ccc
Q 006022 87 GVS 89 (664)
Q Consensus 87 Gs~ 89 (664)
=.+
T Consensus 80 ~~s 82 (90)
T 2al3_A 80 PVS 82 (90)
T ss_dssp CSS
T ss_pred Ecc
Confidence 654
No 111
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=79.57 E-value=9.7 Score=33.67 Aligned_cols=76 Identities=12% Similarity=0.199 Sum_probs=55.5
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
....|.|.. +|+...-.++.+.||.++..-|....+.+...-.|+-+- ..+. +.......||.++||.+...|.
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~f--Prk~---l~~~d~~~TL~elgL~psa~L~ 86 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMF--PRRE---FTREDYKRRLLDLELAPSASVV 86 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSS--SCCB---CCTTTTTSBTGGGTCSSEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCC--CCcC---CcccccCCCHHHCCCCCceEEE
Confidence 357888886 677788899999999999999999988887777887421 1111 2211124789999999887666
Q ss_pred Ee
Q 006022 85 MM 86 (664)
Q Consensus 85 Lm 86 (664)
+.
T Consensus 87 v~ 88 (109)
T 2dzk_A 87 LL 88 (109)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 112
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=79.40 E-value=5 Score=34.72 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=52.3
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
..+.|.|.|++-.+.|.||++-+..+|+.+|.....+ +..+|++. |+-..-.+..++ -.| +..|....|||+
T Consensus 11 ~~~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk~--~~~~l~~y--kde~~g~~i~sD---~dl-~~aiqrn~KL~l 82 (85)
T 1ip9_A 11 KTTKIKFYYKDDIFALMLKGDTTYKELRSKIAPRIDT--DNFKLQTK--LFDGSGEEIKTD---SQV-SNIIQAKLKISV 82 (85)
T ss_dssp CCEEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHTS--SCEEEEEC--CSSSCCSCCCSH---HHH-HHHHHTTCCEEE
T ss_pred CceEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEEe--cCCCCCCcccCH---HHH-HHHHHhcCeeEE
Confidence 4689999999999999999999999999999999999 57777763 221111111111 112 234667888888
Q ss_pred ec
Q 006022 86 MG 87 (664)
Q Consensus 86 mG 87 (664)
.+
T Consensus 83 ~~ 84 (85)
T 1ip9_A 83 HD 84 (85)
T ss_dssp EE
T ss_pred ec
Confidence 65
No 113
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=78.94 E-value=2 Score=39.70 Aligned_cols=32 Identities=6% Similarity=0.126 Sum_probs=29.5
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCC
Q 006022 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKAD 45 (664)
Q Consensus 14 ~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe 45 (664)
.+|+..++.|+.+.||..+...|+..+||+..
T Consensus 19 lDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 19 LDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp TTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred CCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 48889999999999999999999999999854
No 114
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=78.26 E-value=4.8 Score=39.49 Aligned_cols=51 Identities=16% Similarity=0.361 Sum_probs=45.6
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCC
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKL 59 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~L 59 (664)
+.|+|.|.-.|+...|.+..++++.-|+.+.++..|++++.++|++ .|..+
T Consensus 20 ~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~f---dG~~i 70 (209)
T 3uf8_A 20 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRI 70 (209)
T ss_dssp SEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEE---TTEEC
T ss_pred CcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEE---CCEec
Confidence 5789999887888889999999999999999999999999999999 66543
No 115
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=78.12 E-value=0.44 Score=47.82 Aligned_cols=71 Identities=13% Similarity=0.299 Sum_probs=0.0
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
+-|+|.|...|+...|.+..++++..|+.+.++..|+++..++++| .|..+.. ..|..++++..|-.|=+
T Consensus 20 e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLF---DGqRI~d-------ddTPadL~MEDGDtIDV 89 (227)
T 3v7o_A 20 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQA-------DQTPEDLDMEDNDIIEA 89 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEE---CCEecCC-------CCCHHHcCCCCCCEEEE
Confidence 4688888888988889999999999999999999999999999999 6764442 13445667777777755
Q ss_pred e
Q 006022 86 M 86 (664)
Q Consensus 86 m 86 (664)
+
T Consensus 90 ~ 90 (227)
T 3v7o_A 90 H 90 (227)
T ss_dssp -
T ss_pred E
Confidence 4
No 116
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=76.49 E-value=1.2 Score=39.27 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.3
Q ss_pred cchHHHHHHHHHHhhhhccCCc
Q 006022 224 RKYESIKKTLLHELAHMVYSEH 245 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~H 245 (664)
++-+++..+|.|||+|..++.+
T Consensus 78 l~~~El~aVlaHElgH~~~~h~ 99 (107)
T 3cqb_A 78 MTRDEAEAVLAHEVSHIANGDM 99 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHHHHCCCH
Confidence 4678999999999999998764
No 117
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=75.58 E-value=11 Score=37.62 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=52.0
Q ss_pred eEEEEEECCEE---EEEEeCCCCCHHHHHHHHHHHhCCCCC-CceEeecc--CCCCCCCCCCCcccccccccccccCCCc
Q 006022 8 LKVSAIWRGKK---YVVEVNSGSPLKELGHELQKLTDVKAD-TMRFIVPQ--NKGSKLLSPFSDEHSSLSLQEVSIIEGK 81 (664)
Q Consensus 8 i~ItVk~~Gk~---~~i~l~~d~TV~dLK~~Ie~lTgVPpe-~QKLL~pk--~KG~~Lk~p~sD~~~~ltL~~~glk~G~ 81 (664)
+.|++....+. +++.+...+|+.+|+..++++++|+++ .-+|-.-- .+...|. +. ..+|.+++|..|+
T Consensus 140 ~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~----~~--~~tl~d~~L~~~Q 213 (231)
T 3jyu_A 140 LELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLS----KL--DNTIQDAGLYQGQ 213 (231)
T ss_dssp EEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECC----CT--TSBTTTTTCCTTE
T ss_pred ceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhc----CC--CCCHHHhCCCCCC
Confidence 56677777764 456779999999999999999999998 47775421 1222222 11 3578889999999
Q ss_pred eEEE
Q 006022 82 SIRM 85 (664)
Q Consensus 82 KImL 85 (664)
.|.|
T Consensus 214 ~ill 217 (231)
T 3jyu_A 214 VLVI 217 (231)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8876
No 118
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=75.50 E-value=8.3 Score=33.96 Aligned_cols=71 Identities=8% Similarity=0.132 Sum_probs=56.1
Q ss_pred CCeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEE
Q 006022 5 GSMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIR 84 (664)
Q Consensus 5 ~~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KIm 84 (664)
+..|+|+|+++|...-|.+-.++.+.-|..+.++.-||.+..-.+|+ .|..+... .|-.++++..|-.|=
T Consensus 19 ~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlf---DG~rI~~~-------~TP~~L~meD~DiID 88 (95)
T 2l76_A 19 PRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLF---GETELSPT-------ATPRTLKLGVADIID 88 (95)
T ss_dssp CCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEE---TTEECCTT-------SCHHHHTCCSSCEEE
T ss_pred CCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEE---CCcCCCCC-------CCHhHcCCCCCCEEE
Confidence 34699999999999999999999999999999999999999999999 67544421 223445666665553
Q ss_pred E
Q 006022 85 M 85 (664)
Q Consensus 85 L 85 (664)
.
T Consensus 89 ~ 89 (95)
T 2l76_A 89 C 89 (95)
T ss_dssp E
T ss_pred E
Confidence 3
No 119
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=75.21 E-value=0.59 Score=50.11 Aligned_cols=73 Identities=12% Similarity=0.278 Sum_probs=0.0
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
..|+|.|+-.|+...|.+..++++..|+.+.++..|++++.+++++ .|..+.. ..|..++++..|-.|=+
T Consensus 20 ~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlF---dG~rI~~-------~~TP~~L~MEDgD~Idv 89 (360)
T 3ix6_A 20 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQA-------DQTPEDLDMEDNDIIEA 89 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEE---CCeECCC-------CCChHHcCCCccchhhh
Confidence 4789999988888889999999999999999999999999999999 6765542 13456678888877765
Q ss_pred ecc
Q 006022 86 MGV 88 (664)
Q Consensus 86 mGs 88 (664)
+-.
T Consensus 90 ~~~ 92 (360)
T 3ix6_A 90 HRE 92 (360)
T ss_dssp ---
T ss_pred hhc
Confidence 533
No 120
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=74.79 E-value=8.5 Score=34.94 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=54.9
Q ss_pred CCeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 5 GSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 5 ~~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
.....|.|.+ .|+...-.++.+.||.+|..-|... +.++..-.|+.+-++ +.+.. .| ...+|.++||.+...|
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPr-k~l~~--~d--~~~TL~e~gL~psa~L 114 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPR-RKLSH--LD--YDITLQEAGLCPQETV 114 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSC-CEETS--SC--SSSCTTTTTCCSSBCC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCC-cCCcc--CC--CCCCHHHCCCCCceEE
Confidence 3468888987 6877888999999999999999887 788778888742101 11210 12 2478999999987777
Q ss_pred EEe
Q 006022 84 RMM 86 (664)
Q Consensus 84 mLm 86 (664)
+|.
T Consensus 115 iv~ 117 (124)
T 1wj4_A 115 FVQ 117 (124)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 121
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=69.05 E-value=2.1 Score=47.53 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.2
Q ss_pred cchHHHHHHHHHHhhhhccCCcc
Q 006022 224 RKYESIKKTLLHELAHMVYSEHD 246 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~Hd 246 (664)
+.-++|..+++|||+|..|++--
T Consensus 324 l~~~El~aVlaHElgH~~~~~~~ 346 (482)
T 4aw6_A 324 CKNEEVLAVLGHELGHWKLGHTV 346 (482)
T ss_dssp CCHHHHHHHHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHcccHH
Confidence 78899999999999999987643
No 122
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=69.01 E-value=12 Score=38.92 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=37.6
Q ss_pred EEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006022 9 KVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 9 ~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
.+.....-+.+.+.+.+..|+.+|++.|++.|+|+++.|.||+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~ 357 (396)
T 4eut_A 314 HVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYE 357 (396)
T ss_dssp EEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESS
T ss_pred EEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhc
Confidence 44444566677788999999999999999999999999999983
No 123
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=66.96 E-value=20 Score=31.91 Aligned_cols=43 Identities=5% Similarity=0.119 Sum_probs=37.2
Q ss_pred CCCCeeEEEEEECCEEEEEEeC--CCCCHHHHHHHHHHHhCCCCC
Q 006022 3 DLGSMLKVSAIWRGKKYVVEVN--SGSPLKELGHELQKLTDVKAD 45 (664)
Q Consensus 3 ~~~~~i~ItVk~~Gk~~~i~l~--~d~TV~dLK~~Ie~lTgVPpe 45 (664)
.|...++|.|.|+|..+.|.|. .+.|+.+|..-+...++...-
T Consensus 10 ~m~~~v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~~ 54 (101)
T 1wj6_A 10 SMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNTI 54 (101)
T ss_dssp SSCSCEEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSSB
T ss_pred ccCccEEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCce
Confidence 4667899999999999997774 489999999999999999744
No 124
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=64.74 E-value=17 Score=31.53 Aligned_cols=41 Identities=5% Similarity=0.147 Sum_probs=36.6
Q ss_pred CCCCeeEEEEEECCEEEEEEeCC--CCCHHHHHHHHHHHhCCC
Q 006022 3 DLGSMLKVSAIWRGKKYVVEVNS--GSPLKELGHELQKLTDVK 43 (664)
Q Consensus 3 ~~~~~i~ItVk~~Gk~~~i~l~~--d~TV~dLK~~Ie~lTgVP 43 (664)
.|+..+++.|.|+|.++.|.+.- +.|..+|..-+...+|..
T Consensus 2 ~~~~~v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~ 44 (87)
T 2bkf_A 2 AMEPQVTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN 44 (87)
T ss_dssp CCCCCEEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS
T ss_pred CCCceEEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC
Confidence 36678999999999999987754 899999999999999997
No 125
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=64.16 E-value=1.4 Score=46.83 Aligned_cols=71 Identities=13% Similarity=0.297 Sum_probs=0.0
Q ss_pred CeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 6 SMLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
..|+|+|+..|....|.+..++++.-|+...++..|+++..+++++ .|..+.. ..|-.++++..|-.|-+
T Consensus 29 ~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f---~G~~i~~-------~~Tp~~l~med~d~i~~ 98 (389)
T 4da1_A 29 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLY---DGIRIQA-------DQAPEDLDMEDNDIIEA 98 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEE---CCEEcCC-------CCCHHHcCCCCCCEeee
Confidence 4689999888888889999999999999999999999999999999 6764442 13345567766665544
Q ss_pred e
Q 006022 86 M 86 (664)
Q Consensus 86 m 86 (664)
+
T Consensus 99 ~ 99 (389)
T 4da1_A 99 H 99 (389)
T ss_dssp -
T ss_pred e
Confidence 3
No 126
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=58.02 E-value=7.1 Score=35.86 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=29.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCceEee
Q 006022 19 YVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (664)
Q Consensus 19 ~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~ 51 (664)
..+.|..++|+.+|+..|.+.+|||+++|+|-.
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 357888899999999999999999999999964
No 127
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=57.58 E-value=24 Score=36.73 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=36.3
Q ss_pred hHHHHhhcCe-eeccccccCCCCCCCCCCCcccccccCCccEEEEEeecCCCCCccchHHHHHHHHHHhhhhccCCcch
Q 006022 170 IIAIMNKHRW-RVGIMTELAPVGYVGVSPKCVLGFNKNHGEEISLRLRTDDLKGFRKYESIKKTLLHELAHMVYSEHDA 247 (664)
Q Consensus 170 v~piM~~~~w-~V~~L~E~~P~~~~~~s~~~lLGlN~N~G~~I~LRLRt~d~~~Flp~~~I~~tllHELaH~v~g~Hd~ 247 (664)
+.-|+.+.|. .|-. .+| +. ..|+-.+..-.|.|--+ ++...-+-||+|||+|.+...+..
T Consensus 54 ~~~Iae~lGI~~V~~-~~L-~~---------~~G~~~~~~~~I~LN~~-------~~~~rqrFTLAHELGHllLh~~~~ 114 (301)
T 3dte_A 54 THSLMHGLDGITLTF-MPM-GQ---------RDGAYDPEHHVILINSQ-------VRPERQRFTLAHEISHALLLGDDD 114 (301)
T ss_dssp HHHHHHTCSSCEEEE-ECC-TT---------CCEEEETTTTEEEEETT-------SCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHCCCcEEEE-EcC-CC---------CCEEEECCCcEEEEcCC-------CChhhHHHHHHHHHHHHHhccccc
Confidence 5677777777 5532 222 11 23443344455555433 256788899999999998765543
No 128
>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...
Probab=54.08 E-value=6.3 Score=39.25 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=21.7
Q ss_pred cchHHHHHHHHHHhhhhccCCcchhH
Q 006022 224 RKYESIKKTLLHELAHMVYSEHDANF 249 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~Hd~~F 249 (664)
.+....-.||.|||.||.-++||...
T Consensus 177 ~~~~~~a~~~AHElGHnlG~~HD~~~ 202 (257)
T 2ddf_A 177 ILTKEADLVTTHELGHNFGAEHDPDG 202 (257)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCCTT
T ss_pred cccceeeeeeeeehhhhcCcccCCCC
Confidence 44556789999999999999999763
No 129
>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9
Probab=53.57 E-value=5.4 Score=38.28 Aligned_cols=20 Identities=35% Similarity=0.511 Sum_probs=18.8
Q ss_pred HHHHHHHHhhhhccCCcchh
Q 006022 229 IKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 229 I~~tllHELaH~v~g~Hd~~ 248 (664)
+..||.|||.|+.-++||..
T Consensus 135 ~a~~~AHElGH~lG~~HD~~ 154 (197)
T 1qua_A 135 MAVTMAHELGHNLGMNHDGA 154 (197)
T ss_dssp HHHHHHHHHHHHTTCCCCCG
T ss_pred HHHHHHHHHHHhcCCCCCCC
Confidence 68899999999999999987
No 130
>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A
Probab=53.32 E-value=5.9 Score=37.98 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhhccCCcchh
Q 006022 228 SIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~Hd~~ 248 (664)
.+..||.|||.|+.-++||..
T Consensus 132 ~~a~~~AHElGH~lG~~HD~~ 152 (197)
T 1bud_A 132 LVAITLAHEMAHNLGVSHDEG 152 (197)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHhhhcCCccCCC
Confidence 368899999999999999986
No 131
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Probab=52.50 E-value=5.8 Score=38.55 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhhccCCcchh
Q 006022 228 SIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~Hd~~ 248 (664)
.+..||.|||.||.-++||..
T Consensus 140 ~~a~~~AHElGHnlG~~HD~~ 160 (217)
T 3b8z_A 140 HAAFTVAHEIGHLLGLSHDDS 160 (217)
T ss_dssp SHHHHHHHHHHHHTTCCCTTS
T ss_pred chhhhhHhhhhhhcCCcCCCC
Confidence 467899999999999999975
No 132
>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}
Probab=51.81 E-value=5.7 Score=38.30 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhccCCcchhH
Q 006022 229 IKKTLLHELAHMVYSEHDANF 249 (664)
Q Consensus 229 I~~tllHELaH~v~g~Hd~~F 249 (664)
+..||.|||.|+.-++||...
T Consensus 135 ~a~~~AHElGH~lG~~HD~~~ 155 (202)
T 1yp1_A 135 MAVVMAHELGHNLGMLHDDGY 155 (202)
T ss_dssp HHHHHHHHHHHHTTCCCCCTT
T ss_pred HHHHHHHHHHHhcCCCCCCCC
Confidence 678999999999999999873
No 133
>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A
Probab=51.79 E-value=6 Score=38.23 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhhhccCCcchh
Q 006022 228 SIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~Hd~~ 248 (664)
.+..||.|||.||.-++||..
T Consensus 137 ~~a~~~AHElGH~lG~~HD~~ 157 (203)
T 1kuf_A 137 MVAVTMTHELGHNLGMEHDDK 157 (203)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred hhHHHHHHHhhhhcCCCCCCC
Confidence 478899999999999999987
No 134
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=51.56 E-value=6.5 Score=37.82 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhccCCcchh
Q 006022 228 SIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~Hd~~ 248 (664)
.+..||.|||.|+.-++||..
T Consensus 135 ~~a~~~AHElGH~lG~~HD~~ 155 (202)
T 2w15_A 135 WVAVTMAHELGHNLGIHHDTG 155 (202)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHhhhcCCccCCC
Confidence 468899999999999999986
No 135
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=50.89 E-value=6.8 Score=37.76 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=18.6
Q ss_pred HHHHHHHHhhhhccCCcchh
Q 006022 229 IKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 229 I~~tllHELaH~v~g~Hd~~ 248 (664)
+..||.|||.||.-++||..
T Consensus 136 ~a~~~AHElGHnlG~~HD~~ 155 (202)
T 1atl_A 136 MGVTMAHELGHNLGMEHDGK 155 (202)
T ss_dssp HHHHHHHHHHHHTTCCCCCT
T ss_pred eEEEehhhhccccCceeCCC
Confidence 67899999999999999986
No 136
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*
Probab=49.58 E-value=6.7 Score=40.09 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhhccCCcchh
Q 006022 228 SIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~Hd~~ 248 (664)
.+..||.|||.||.-++||..
T Consensus 142 ~~a~t~AHElGHnlG~~HD~~ 162 (300)
T 2v4b_A 142 QAAFTTAHELGHVFNMPHDDA 162 (300)
T ss_dssp THHHHHHHHHHHHTTCCCTTS
T ss_pred cceehhhhhhhhhcCCcCCCC
Confidence 367899999999999999974
No 137
>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}
Probab=49.44 E-value=8.9 Score=37.14 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhhhhccCCcchh
Q 006022 226 YESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 226 ~~~I~~tllHELaH~v~g~Hd~~ 248 (664)
+..+-.||.|||.||.-.+||..
T Consensus 130 ~~~~a~~~AHElGH~lG~~HD~~ 152 (208)
T 4dd8_A 130 PVGVACTMAHEMGHNLGMDHDEN 152 (208)
T ss_dssp HHHHHHHHHHHHHHHTTCCCGGG
T ss_pred hhHHHHHHHHHHHHHcCCcCCCC
Confidence 34456899999999999999965
No 138
>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*
Probab=48.24 E-value=8.8 Score=38.98 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=21.8
Q ss_pred cchHHHHHHHHHHhhhhccCCcchhH
Q 006022 224 RKYESIKKTLLHELAHMVYSEHDANF 249 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~Hd~~F 249 (664)
.++.....||.|||.||.-++||...
T Consensus 183 ~~~~~~a~~~AHElGHnlGm~HD~~~ 208 (288)
T 2i47_A 183 ILTKEADLVTTHELGHNFGAEHDPDG 208 (288)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCCCCS
T ss_pred cchhhHHHHHHHHHHhhcCCccCCCC
Confidence 45556789999999999999999763
No 139
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=47.76 E-value=40 Score=35.16 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=50.7
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhC----CCCCCceEeecc---CCCCCCCCCCCcccccccccccccCC
Q 006022 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTD----VKADTMRFIVPQ---NKGSKLLSPFSDEHSSLSLQEVSIIE 79 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTg----VPpe~QKLL~pk---~KG~~Lk~p~sD~~~~ltL~~~glk~ 79 (664)
.+++.|...+.+.++.++++.||.|.-..|.+.+. .+++.--|+.+. .||.-|+. ..+|..+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~-------~~~l~~y~~~~ 75 (371)
T 3ivf_A 3 ALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEA-------GKALDYYMLRN 75 (371)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCT-------TSBGGGGTCCT
T ss_pred cEEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccC-------CCCHHHhCCCC
Confidence 67888888899999999999999999999988774 367777888732 13332331 13567777776
Q ss_pred CceE
Q 006022 80 GKSI 83 (664)
Q Consensus 80 G~KI 83 (664)
|..|
T Consensus 76 ~~~l 79 (371)
T 3ivf_A 76 GDTM 79 (371)
T ss_dssp TCEE
T ss_pred Ccee
Confidence 6543
No 140
>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}
Probab=47.50 E-value=7.4 Score=41.09 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhhhccCCcchh
Q 006022 228 SIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~Hd~~ 248 (664)
.+..||.|||.||.-++||..
T Consensus 142 ~~a~~~AHElGHnlGm~HD~~ 162 (378)
T 2rjq_A 142 HAAFTVAHEIGHLLGLSHDDS 162 (378)
T ss_dssp THHHHHHHHHHHHTTCCCTTS
T ss_pred chhhhhhhhhhhhcCccCCCC
Confidence 367899999999999999975
No 141
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=46.51 E-value=8.1 Score=45.90 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 006022 225 KYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 225 p~~~I~~tllHELaH~v~g~ 244 (664)
.+..|..+++|||||+++|+
T Consensus 291 ~~~~i~~vIAHElAHQWFGN 310 (889)
T 3ebh_A 291 SYARILTVVGHEYFHQYTGN 310 (889)
T ss_dssp HHHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 46678999999999999996
No 142
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A
Probab=46.44 E-value=8 Score=39.87 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhhccCCcchh
Q 006022 228 SIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~Hd~~ 248 (664)
.+..||.|||.||.-++||..
T Consensus 142 ~~a~t~AHElGHnlGm~HD~~ 162 (316)
T 2rjp_A 142 QSAFTAAHQLGHVFNMLHDNS 162 (316)
T ss_dssp THHHHHHHHHHHHTTCCCTTS
T ss_pred hHHHHHHHHHHhhcCccCCCC
Confidence 567899999999999999975
No 143
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=44.24 E-value=9.2 Score=45.15 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 006022 225 KYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 225 p~~~I~~tllHELaH~v~g~ 244 (664)
.+..|..+++|||||+++|+
T Consensus 283 ~~~~i~~vIaHElAHqWfGn 302 (867)
T 2gtq_A 283 DFEGIESVVGHEYFHNWTGN 302 (867)
T ss_dssp HHHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 46788999999999999996
No 144
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=43.58 E-value=17 Score=41.76 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=34.9
Q ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006022 14 WRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 14 ~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
..++.+.+.+.++.|+.+|+..|++.|||++++|-|+++
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~ 357 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQA 357 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 345566788899999999999999999999999999995
No 145
>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*
Probab=43.09 E-value=10 Score=36.95 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhhccCCcchh
Q 006022 228 SIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~Hd~~ 248 (664)
.+..||.|||.||.-++||..
T Consensus 135 ~~a~~~AHElGHnlG~~HD~~ 155 (214)
T 1r55_A 135 GAAATMAHEIGHSLGLSHDPD 155 (214)
T ss_dssp HHHHHHHHHHHHHTTCCCCCT
T ss_pred HHHHHHHHHHHHhcCCcCCCC
Confidence 467999999999999999985
No 146
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.97 E-value=63 Score=28.08 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=49.8
Q ss_pred CeeEEEEEECCEEEE-EEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCC
Q 006022 6 SMLKVSAIWRGKKYV-VEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIE 79 (664)
Q Consensus 6 ~~i~ItVk~~Gk~~~-i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~ 79 (664)
.++.+.|.+.+..-+ +.+.+..++++|--.|++...+.|++--|+-. .+...+. ....+|.++||+.
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d----~~~~e~L---dLskSLndlgirE 76 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKD----YQSQEPL---DLTKSLNDLGLRE 76 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESC----SSCCCBC---CTTSCHHHHTCSE
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecC----CCCCccc---chhcchhhhhhhh
Confidence 589999999876655 58999999999999999999999999888742 1111111 1135677778754
No 147
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=42.79 E-value=10 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.2
Q ss_pred CccchHHHHHHHHHHhhhhccCC
Q 006022 222 GFRKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 222 ~Flp~~~I~~tllHELaH~v~g~ 244 (664)
....+..+..+++|||||.++|+
T Consensus 252 ~~~~~~~~~~viaHElaHqWfGn 274 (780)
T 1z5h_A 252 AVTVKRNSANVIAHEIAHQWFGD 274 (780)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBTT
T ss_pred CHHHHHHHHHHHHHHHHHHHhCC
Confidence 34556779999999999999995
No 148
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=42.53 E-value=9.9 Score=38.07 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHhhhhccCCcchhH
Q 006022 225 KYESIKKTLLHELAHMVYSEHDANF 249 (664)
Q Consensus 225 p~~~I~~tllHELaH~v~g~Hd~~F 249 (664)
.-+++..||.|||+|..++.+-..+
T Consensus 96 ~~~ELaaVLaHElgH~~~~H~~~~~ 120 (253)
T 3c37_A 96 NETELAGVLAHEINHAVARHGTRQM 120 (253)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 5689999999999999988665443
No 149
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=41.37 E-value=76 Score=27.18 Aligned_cols=69 Identities=10% Similarity=0.142 Sum_probs=50.2
Q ss_pred eEEEEEECC-EEEEEEeCCCCCHHHHHHHHHHHhCCCCC-CceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 8 LKVSAIWRG-KKYVVEVNSGSPLKELGHELQKLTDVKAD-TMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 8 i~ItVk~~G-k~~~i~l~~d~TV~dLK~~Ie~lTgVPpe-~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
|++-+.-.+ ..+.|.+++++||..|-.+-+..-||+++ ...|+| -|--|. | ..+++++.+..|--|=+
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllF---DGdRLd-p------~~tp~DlemeD~D~IDv 79 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEF---EGEWLD-P------NDQVQSTELEDEDQVSV 79 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEE---TTEECC-T------TSBGGGSSCCTTCEEEE
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEE---cCcccC-c------cCChhhhCCcCCceeee
Confidence 444443332 23568999999999999999999999999 899999 675443 2 24567778877766654
Q ss_pred e
Q 006022 86 M 86 (664)
Q Consensus 86 m 86 (664)
|
T Consensus 80 m 80 (82)
T 3goe_A 80 V 80 (82)
T ss_dssp E
T ss_pred e
Confidence 4
No 150
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=41.27 E-value=11 Score=44.76 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.3
Q ss_pred cchHHHHHHHHHHhhhhccCC
Q 006022 224 RKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 224 lp~~~I~~tllHELaH~v~g~ 244 (664)
..+..|..+++|||||+++|+
T Consensus 307 ~~~~~i~~vIAHElAHqWFGN 327 (891)
T 3b34_A 307 KDYLDIERVIGHEYFHNWTGN 327 (891)
T ss_dssp HHHHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 346788999999999999995
No 151
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=40.60 E-value=60 Score=29.33 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=49.6
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHH-hCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceE
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKL-TDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSI 83 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~l-TgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KI 83 (664)
....|.|.. +|+...-.++.+.||.+|..-|... .+.....-.|+..- ..+. +.|. ..||.++||.+..-|
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~f--Prk~---l~d~--~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTF--PNKE---LADE--NQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETT--TTEE---CCST--TCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCC--CCCC---CCCC--CCcHHHCCCcCceEE
Confidence 457788886 6777788999999999999999986 34556667777421 1111 2222 378999999885443
No 152
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=40.44 E-value=38 Score=29.52 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=33.2
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006022 17 KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 17 k~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
++|+|.++.++|=.+.|++++.+++|.+..-.-+..
T Consensus 28 n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~ 63 (93)
T 3r8s_T 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVV 63 (93)
T ss_dssp SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEe
Confidence 589999999999999999999999999998887764
No 153
>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A*
Probab=40.27 E-value=15 Score=35.04 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHhhhhccCCcc
Q 006022 226 YESIKKTLLHELAHMVYSEHD 246 (664)
Q Consensus 226 ~~~I~~tllHELaH~v~g~Hd 246 (664)
...+.++++|||.|+.-..|-
T Consensus 111 ~~r~~k~~~HElGH~lGL~HC 131 (163)
T 4axq_A 111 RERVVKEAVHEIGHVLGLKHC 131 (163)
T ss_dssp HHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 567999999999999999994
No 154
>1g12_A Peptidyl-Lys metalloendopeptidase; zinc cordinate,metalloprotease, hydrolase; HET: MAN; 1.60A {Grifola frondosa} SCOP: d.92.1.12 PDB: 1ge5_A* 1ge6_A* 1ge7_A*
Probab=40.04 E-value=9.1 Score=36.29 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhc
Q 006022 227 ESIKKTLLHELAHMV 241 (664)
Q Consensus 227 ~~I~~tllHELaH~v 241 (664)
.+-..||||||+|..
T Consensus 109 ~s~a~tllHE~tH~~ 123 (167)
T 1g12_A 109 DSQAGTLVHESSHFT 123 (167)
T ss_dssp TCHHHHHHHHHHHSG
T ss_pred CCchhhHHHhhhccc
Confidence 456899999999985
No 155
>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*
Probab=39.95 E-value=13 Score=40.27 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhccCCcchh
Q 006022 227 ESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 227 ~~I~~tllHELaH~v~g~Hd~~ 248 (664)
..+..||.|||.||.-++||..
T Consensus 144 ~~~a~t~AHElGHnlG~~HD~~ 165 (427)
T 2ero_A 144 HLVAIAMAHEMGHNLGMDHDKD 165 (427)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCT
T ss_pred hHHHHHHHHHHHHhcCCccCCC
Confidence 4567899999999999999987
No 156
>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*
Probab=39.86 E-value=13 Score=40.18 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhhccCCcchh
Q 006022 227 ESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 227 ~~I~~tllHELaH~v~g~Hd~~ 248 (664)
..+..||.|||.||.-++||..
T Consensus 135 ~~~a~t~AHElGHnlG~~HD~~ 156 (419)
T 2dw0_A 135 LVVAVIMAHEMGHNLGINHDSG 156 (419)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCT
T ss_pred hhhhhhHHHHHHHHcCCccCCC
Confidence 4567899999999999999986
No 157
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=39.41 E-value=12 Score=44.17 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=17.7
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 006022 225 KYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 225 p~~~I~~tllHELaH~v~g~ 244 (664)
.+..|..+++|||||.++|+
T Consensus 298 ~~~~~~~viaHElAHqWFGn 317 (897)
T 2xdt_A 298 SKLGITMTVAHELAHQWFGN 317 (897)
T ss_dssp HHHHHHHHHHHHHHTTTBTT
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 45688999999999999996
No 158
>2ejq_A Hypothetical protein TTHA0227; NPPSFA, national project on protein structural and functional analyses; 2.08A {Thermus thermophilus} SCOP: d.92.1.17
Probab=39.18 E-value=12 Score=34.44 Aligned_cols=34 Identities=32% Similarity=0.504 Sum_probs=23.6
Q ss_pred ccEEEEEeec--C-CCCCccchHHHHHHHHHHhhhhc
Q 006022 208 GEEISLRLRT--D-DLKGFRKYESIKKTLLHELAHMV 241 (664)
Q Consensus 208 G~~I~LRLRt--~-d~~~Flp~~~I~~tllHELaH~v 241 (664)
+..|.|=-|. . -....---+.|+.|++||++|..
T Consensus 65 P~~I~lYR~pi~~~~~~~eeL~~~V~~tvvHEiaHhf 101 (130)
T 2ejq_A 65 GRHIALYYGSFLEVAGEGFDWEAEVWETMLHELRHHL 101 (130)
T ss_dssp CCEEEEEHHHHHHHCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEehHHHHHHhCChhhHHHHHHHHHHHHhHHHH
Confidence 5667766566 1 12345556789999999999954
No 159
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}
Probab=39.09 E-value=14 Score=40.12 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhhccCCcchh
Q 006022 227 ESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 227 ~~I~~tllHELaH~v~g~Hd~~ 248 (664)
..+..||.|||.||.-++||..
T Consensus 137 ~~~a~t~AHElGHnlGm~HD~~ 158 (427)
T 2e3x_A 137 FKTAVIMAHELSHNLGMYHDGK 158 (427)
T ss_dssp HHHHHHHHHHHHHTTTCCCCCT
T ss_pred ceeeeehHHHHHHhhCCccCCC
Confidence 4567899999999999999986
No 160
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=38.21 E-value=13 Score=43.95 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=20.4
Q ss_pred CCccchHHHHHHHHHHhhhhccCCc
Q 006022 221 KGFRKYESIKKTLLHELAHMVYSEH 245 (664)
Q Consensus 221 ~~Flp~~~I~~tllHELaH~v~g~H 245 (664)
........+..+++|||||.++|+-
T Consensus 308 s~~~~~~~~~~viaHElAHqWFGnl 332 (909)
T 4fke_A 308 SSISNKERVVTVIAHELAHQWFGNL 332 (909)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTBTTT
T ss_pred CChHHHHHHHHHHHHHHHhhhhcCe
Confidence 3455567889999999999999965
No 161
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=37.97 E-value=25 Score=33.52 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=27.0
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 006022 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDV 42 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgV 42 (664)
..|+++.+|+.|+++++++.||.++=.....+||+
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgl~g~ 38 (166)
T 1n62_A 4 AHIELTINGHPVEALVEPRTLLIHFIREQQNLTGA 38 (166)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHTSCCTTS
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHHcCCCCcc
Confidence 46888889999999999999999875553334444
No 162
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=37.71 E-value=1.3e+02 Score=26.12 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=51.7
Q ss_pred CeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEee--ccCCCCCCCCCCCcccccccccccccCCCce
Q 006022 6 SMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV--PQNKGSKLLSPFSDEHSSLSLQEVSIIEGKS 82 (664)
Q Consensus 6 ~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~--pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~K 82 (664)
..++|.|.. +|+...-.++.+.||.+|..-|... +..+..-+|+. |+ +.+.. | ...||.++||.+...
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPr---k~l~~---d--~~~TL~e~gL~p~a~ 92 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPR---RALEV---E--GGSSLEDIGITVDTV 92 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSC---CBCCC---C--SSCBHHHHTCSSCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCC---cCCCC---C--CCCCHHHcCCCCCeE
Confidence 368888886 5777777899999999999999965 55667777763 32 11211 2 247899999998877
Q ss_pred EEEe
Q 006022 83 IRMM 86 (664)
Q Consensus 83 ImLm 86 (664)
|.|-
T Consensus 93 L~Ve 96 (109)
T 2cr5_A 93 LNVE 96 (109)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7663
No 163
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=37.54 E-value=54 Score=28.94 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=34.1
Q ss_pred eeEEEEEEC--------CEEEEEEeCCCCCHHHHHHHHHHHhCCC
Q 006022 7 MLKVSAIWR--------GKKYVVEVNSGSPLKELGHELQKLTDVK 43 (664)
Q Consensus 7 ~i~ItVk~~--------Gk~~~i~l~~d~TV~dLK~~Ie~lTgVP 43 (664)
.|.|.|+|+ +..+.|-++++.+..+|..+|.+.++++
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 689999999 6778999999999999999999999876
No 164
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=37.09 E-value=8.3 Score=43.38 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhccCCc
Q 006022 228 SIKKTLLHELAHMVYSEH 245 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~H 245 (664)
.+..+++|||||.++|+-
T Consensus 286 ~~~~viaHElAHqWfGnl 303 (608)
T 3u9w_A 286 SLSNVIAHEISHSWTGNL 303 (608)
T ss_dssp TTTHHHHHHHHTTTBTTT
T ss_pred hhHHHHHHHhhhhhhcCc
Confidence 466789999999999964
No 165
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=36.57 E-value=27 Score=33.16 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=26.9
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 006022 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDV 42 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgV 42 (664)
..|+++.+|+.|+++++++.||.++=.....+||+
T Consensus 4 ~~i~~~vNG~~~~~~v~~~~tLLd~LR~~lgltg~ 38 (163)
T 1ffv_A 4 KIITVNVNGKAQEKAVEPRTLLIHFLREELNLTGA 38 (163)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHTSCCTTS
T ss_pred ceEEEEECCEEEEEecCCCCcHHHHHHhcCCCccc
Confidence 36888889999999999999999875553334444
No 166
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Probab=35.92 E-value=15 Score=39.48 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhhccCCcchh
Q 006022 227 ESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 227 ~~I~~tllHELaH~v~g~Hd~~ 248 (664)
..+..||.|||.||.-++||..
T Consensus 137 ~~~a~t~AHElGHnlGm~HD~~ 158 (397)
T 3k7n_A 137 SLVASTITHELGHNLGIHHDKA 158 (397)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCT
T ss_pred chhhhhHHHHHHHHcCCccCCC
Confidence 3577899999999999999976
No 167
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=35.66 E-value=44 Score=29.18 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=31.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006022 19 YVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 19 ~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
|+|.+++++|=.+.|++++.+++|.+..-.-+..
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~ 58 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNV 58 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCB
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEe
Confidence 9999999999999999999999999998888764
No 168
>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}
Probab=35.14 E-value=16 Score=39.70 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhccCCcchh
Q 006022 227 ESIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 227 ~~I~~tllHELaH~v~g~Hd~~ 248 (664)
..+..||.|||.||.-++||..
T Consensus 142 ~~~a~t~AHElGHnlGm~HD~~ 163 (422)
T 3k7l_A 142 RMVAITMAHEMGHNLGMNHDRG 163 (422)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCS
T ss_pred hhhhHHHHHHHHHHcCCccCCC
Confidence 3577899999999999999975
No 169
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=34.06 E-value=32 Score=32.45 Aligned_cols=35 Identities=17% Similarity=0.008 Sum_probs=27.6
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCC
Q 006022 8 LKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDV 42 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgV 42 (664)
..|+++.+|+.|+++++++.||.++=..+..+|++
T Consensus 3 ~~i~~~vNG~~~~v~~~~~~tLL~~Lr~~~gl~g~ 37 (161)
T 1rm6_C 3 NILRLTLNGRAREDLVPDNMLLLDYLRETVGLTGT 37 (161)
T ss_dssp EEEEEEETTEEEEEEEETTCBHHHHHHHTTCCTTS
T ss_pred ceEEEEECCEEEEEecCCcCcHHHHHHHcCCCccc
Confidence 46888889999999999999998877665444444
No 170
>1eb6_A Neutral protease II; metalloproteinase, zinc, hydrolase; 1.0A {Aspergillus oryzae} SCOP: d.92.1.12
Probab=33.96 E-value=13 Score=35.56 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhhhcc
Q 006022 228 SIKKTLLHELAHMVY 242 (664)
Q Consensus 228 ~I~~tllHELaH~v~ 242 (664)
+-..||||||+|+..
T Consensus 121 ~~a~tllHE~tH~~~ 135 (177)
T 1eb6_A 121 DQATTTLHEFTHAPG 135 (177)
T ss_dssp CHHHHHHHHHHTCTT
T ss_pred cHHHHHHHHHHhhhh
Confidence 688999999999873
No 171
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=31.50 E-value=42 Score=31.69 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=25.4
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHH
Q 006022 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHE 35 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~ 35 (664)
.+.|+|+.+|+.++++++++.||.++-..
T Consensus 9 ~m~i~~~ing~~~~~~v~~~~tlL~~Lr~ 37 (168)
T 1t3q_A 9 LMRISATINGKPRVFYVEPRMHLADALRE 37 (168)
T ss_dssp CEEEEEEETTEEEEEEECTTSBHHHHHHH
T ss_pred cceEEEEECCEEEEEecCCCCcHHHHHHh
Confidence 46789999999999999999999887655
No 172
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=31.26 E-value=21 Score=42.72 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=18.5
Q ss_pred ccchHHHHHHHHHHhhhhccCC
Q 006022 223 FRKYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 223 Flp~~~I~~tllHELaH~v~g~ 244 (664)
......+..+++|||||.++|+
T Consensus 358 ~~~k~~~~~vIaHElAHqWFGn 379 (967)
T 3se6_A 358 ASDKLWVTRVIAHELAHQWFGN 379 (967)
T ss_dssp HHHHHHHHHHHHHHHGGGTBTT
T ss_pred HHhhHhHHHHHHHHHHHHHhcC
Confidence 3455678999999999999996
No 173
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=30.41 E-value=47 Score=28.85 Aligned_cols=36 Identities=17% Similarity=0.174 Sum_probs=33.0
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006022 17 KKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 17 k~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
++|+|.++..+|=.+.|++++.+++|.+..-..|..
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~ 57 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHV 57 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeee
Confidence 689999999999999999999999999988887764
No 174
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=28.62 E-value=40 Score=32.03 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=23.9
Q ss_pred eEEEEEECCEEEEEEeCCCCCHHHHHH
Q 006022 8 LKVSAIWRGKKYVVEVNSGSPLKELGH 34 (664)
Q Consensus 8 i~ItVk~~Gk~~~i~l~~d~TV~dLK~ 34 (664)
+.|+++.+|+.|+++++++.|+.++=.
T Consensus 4 ~~i~~~vNG~~~~v~v~p~~tLLd~LR 30 (160)
T 3hrd_D 4 ITINLNLNGEARSIVTEPNKRLLDLLR 30 (160)
T ss_dssp EEEEEEETTEEEEEEECSSSBHHHHHH
T ss_pred ceEEEEECCEEEEEecCCCCCHHHHHH
Confidence 568999999999999999999998744
No 175
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=28.59 E-value=53 Score=28.12 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=33.0
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006022 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 16 Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
.++|+|.++.++|=.+.|++++.+++|.+..-.-+..
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~ 58 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNT 58 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEEC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeec
Confidence 4589999999999999999999999999988777763
No 176
>3e11_A Predicted zincin-like metalloprotease; DUF1025 family protein, zincin-like fold, conserved matrix metalloprotease motif; 1.80A {Acidothermus cellulolyticus 11B} SCOP: d.92.1.17
Probab=28.48 E-value=24 Score=31.71 Aligned_cols=16 Identities=38% Similarity=0.769 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHhhhhc
Q 006022 226 YESIKKTLLHELAHMV 241 (664)
Q Consensus 226 ~~~I~~tllHELaH~v 241 (664)
-+.|..|++||+||..
T Consensus 87 ~~~V~~vvvhEiahh~ 102 (114)
T 3e11_A 87 IDEVRKTVVHEIAHHF 102 (114)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5779999999999964
No 177
>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, MUR16; 2.00A {Methanocorpusculum labreanum}
Probab=28.43 E-value=27 Score=34.72 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHhhhhccCCcch
Q 006022 226 YESIKKTLLHELAHMVYSEHDA 247 (664)
Q Consensus 226 ~~~I~~tllHELaH~v~g~Hd~ 247 (664)
.+.|.+|++|||.|+.-.+|-.
T Consensus 140 ~~Rv~k~~~HElGH~lGL~HC~ 161 (210)
T 3lmc_A 140 IDRIVKEGAHEIGHLFGLGHCD 161 (210)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHhcCCCCCC
Confidence 6789999999999999999943
No 178
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=28.38 E-value=82 Score=26.85 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=37.8
Q ss_pred eeEEEEEECCEEEEEEeCCC-CCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEE
Q 006022 7 MLKVSAIWRGKKYVVEVNSG-SPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRM 85 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d-~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImL 85 (664)
+..++|+-+|+.++| +.. .||.+|-.+| +++++.--+.+ .|..+. . ..+.+..|++|-+|.+
T Consensus 18 ~~~M~I~vNGe~~el--~~~~~Tv~dLL~~L----~~~~~~vaVav---Ng~iV~-~-------~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 18 GGRHMLQLNGKDVKW--KKDTGTIQDLLASY----QLENKIVIVER---NKEIIG-K-------ERYHEVELCDRDVIEI 80 (87)
T ss_dssp ----CEEETTEEECC--SSSCCBHHHHHHHT----TCTTSCCEEEE---TTEEEC-G-------GGTTTSBCCSSSEEEE
T ss_pred CcceEEEECCEEEEC--CCCCCcHHHHHHHh----CCCCCCEEEEE---CCEECC-h-------hhcCCcCCCCCCEEEE
Confidence 455678899987654 666 8999998877 66665544444 453221 0 1123345788888877
Q ss_pred e
Q 006022 86 M 86 (664)
Q Consensus 86 m 86 (664)
+
T Consensus 81 ~ 81 (87)
T 1tyg_B 81 V 81 (87)
T ss_dssp E
T ss_pred E
Confidence 5
No 179
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A {Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Probab=28.09 E-value=20 Score=40.60 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhhccCC
Q 006022 228 SIKKTLLHELAHMVYSE 244 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~ 244 (664)
.+..+++|||||.++|+
T Consensus 294 ~~~~viaHElAHqWfGn 310 (632)
T 2xq0_A 294 SNIDVIAHELAHSWSGN 310 (632)
T ss_dssp CSTHHHHHHHHHTTBTT
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 35689999999999995
No 180
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A {Colwellia psychrerythraea}
Probab=27.68 E-value=20 Score=40.19 Aligned_cols=17 Identities=35% Similarity=0.429 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhhhccCC
Q 006022 228 SIKKTLLHELAHMVYSE 244 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~ 244 (664)
.+..+++|||||.++|+
T Consensus 293 ~~~~viaHElaHqWfGn 309 (605)
T 3cia_A 293 SLVNLIAHELAHSWSGN 309 (605)
T ss_dssp CSTHHHHHHHHHTTBTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 46789999999999996
No 181
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri}
Probab=27.52 E-value=29 Score=33.92 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHhhhhccCCc
Q 006022 226 YESIKKTLLHELAHMVYSEH 245 (664)
Q Consensus 226 ~~~I~~tllHELaH~v~g~H 245 (664)
...+..|++|||.|+.-..|
T Consensus 136 ~~r~~~~~~HElGH~lGl~H 155 (195)
T 2x7m_A 136 LERVVKELTHELGHTFGLGH 155 (195)
T ss_dssp HHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 34688999999999999999
No 182
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}
Probab=27.17 E-value=29 Score=38.68 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhccCCcchh
Q 006022 228 SIKKTLLHELAHMVYSEHDAN 248 (664)
Q Consensus 228 ~I~~tllHELaH~v~g~Hd~~ 248 (664)
.+..||.|||.||.-++||..
T Consensus 133 ~~A~t~AHELGHnLGm~HD~~ 153 (510)
T 3g5c_A 133 LMAVTLAQSLAHNIGIISDKR 153 (510)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH
T ss_pred hhhHHHHHHHHHHcCCccCCC
Confidence 477899999999999999975
No 183
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=26.54 E-value=58 Score=27.03 Aligned_cols=61 Identities=18% Similarity=0.274 Sum_probs=39.5
Q ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCC-CCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 11 SAIWRGKKYVVEVNSGSPLKELGHELQKLTDVK-ADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 11 tVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVP-pe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+|+-+|+.+++..+...||.+|-.++ +++ ++.--+.+ .|..+.. ..+.+..|+.|-+|-++
T Consensus 2 ~I~vNGe~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVav---Ng~iVpr--------~~~~~~~L~dGD~IEIv 63 (78)
T 2k5p_A 2 NLTVNGKPSTVDGAESLNVTELLSAL----KVAQAEYVTVEL---NGEVLER--------EAFDATTVKDGDAVEFL 63 (78)
T ss_dssp EEEETTEEEECSSCSCEEHHHHHHHH----TCSCTTTCCEEE---TTEECCT--------THHHHCEECSSBCEEEC
T ss_pred EEEECCEEEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEE---CCEECCh--------HHcCcccCCCCCEEEEE
Confidence 57889997765432678999998877 787 76665555 5543221 11334457788888775
No 184
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=25.95 E-value=63 Score=32.81 Aligned_cols=42 Identities=10% Similarity=-0.016 Sum_probs=34.7
Q ss_pred CCCCeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 006022 3 DLGSMLKVSAIW-RGKKYVVEVNSGSPLKELGHELQKLTDVKA 44 (664)
Q Consensus 3 ~~~~~i~ItVk~-~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPp 44 (664)
+....+.+.|.. +|+..++.+++.+|+.+|-..|++.+|+..
T Consensus 13 ~~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e 55 (296)
T 3qij_A 13 NLYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLE 55 (296)
T ss_dssp ----CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSS
T ss_pred CCCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCC
Confidence 444578899986 788899999999999999999999999873
No 185
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=25.88 E-value=1.1e+02 Score=28.33 Aligned_cols=61 Identities=15% Similarity=0.212 Sum_probs=43.7
Q ss_pred EEeCC----CCCHHHHHHHHHHHhCCCC-------CCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEeccc
Q 006022 21 VEVNS----GSPLKELGHELQKLTDVKA-------DTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMMGVS 89 (664)
Q Consensus 21 i~l~~----d~TV~dLK~~Ie~lTgVPp-------e~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLmGs~ 89 (664)
|.++. .+|+.+|=..|....|..- ..|+|||- .+|.|. ...+|.++|+++|+-|+++--.
T Consensus 10 l~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV~~~~~~rLLyD--------~DfDDn-l~k~L~dLgv~~gsfLtv~DEd 80 (127)
T 3onh_A 10 IKLSSDCLNKMKLSDFVVLIREKYSYPQDISLLDASNQRLLFD--------YDFEDL-NDRTLSEINLGNGSIILFSDEE 80 (127)
T ss_dssp EEECHHHHHHCBHHHHHHHHHHHHTCCSSEEEEETTTTEEEEE--------TTBCTT-TTSBTTTTTCCTTCEEEEEESC
T ss_pred EEeCcccccccCHHHHHHHHHHhcCCCCcEEEEecCCCCeEeC--------CCcccc-ccCcHHHcCcCCCcEEEEEccc
Confidence 45553 4799999888988877643 24777771 245444 3467999999999999998764
Q ss_pred h
Q 006022 90 E 90 (664)
Q Consensus 90 ~ 90 (664)
.
T Consensus 81 d 81 (127)
T 3onh_A 81 G 81 (127)
T ss_dssp C
T ss_pred c
Confidence 3
No 186
>2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structu proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus}
Probab=24.38 E-value=38 Score=31.93 Aligned_cols=33 Identities=12% Similarity=0.243 Sum_probs=28.3
Q ss_pred CCCeeEEEEEECCEEEEEEeCCCC---CHHHHHHHH
Q 006022 4 LGSMLKVSAIWRGKKYVVEVNSGS---PLKELGHEL 36 (664)
Q Consensus 4 ~~~~i~ItVk~~Gk~~~i~l~~d~---TV~dLK~~I 36 (664)
.+..+.|+|++++++++++|..+. |..+|..+|
T Consensus 26 ~~~~~~I~i~~~~~~~~a~L~D~~aP~Ta~~f~~~L 61 (153)
T 2nnz_A 26 RGVEMRLRIRFESAECEVELYEEWAPETVRAIADAL 61 (153)
T ss_dssp CSSCCCEEEEETTEEEEECCCTTSCHHHHHHHHHTC
T ss_pred ccCCeEEEEEECCEEEEEEEcCCCCHHHHHHHHHhC
Confidence 344678999999999999999998 999998876
No 187
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=24.23 E-value=88 Score=25.55 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=39.3
Q ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeeccCCCCCCCCCCCcccccccccccccCCCceEEEe
Q 006022 11 SAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVPQNKGSKLLSPFSDEHSSLSLQEVSIIEGKSIRMM 86 (664)
Q Consensus 11 tVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~pk~KG~~Lk~p~sD~~~~ltL~~~glk~G~KImLm 86 (664)
+|+-+|+.+++ ...||.+|-.++ +++++.--+.+ .|..+.. ..+.+..|++|-+|-++
T Consensus 2 ~I~vNG~~~e~---~~~Tl~~LL~~l----~~~~~~vAV~v---Ng~iVpr--------~~~~~~~L~dGD~veIv 59 (73)
T 2kl0_A 2 LVTINGEQREV---QSASVAALMTEL----DCTGGHFAVAL---NYDVVPR--------GKWDETPVTAGDEIEIL 59 (73)
T ss_dssp CEEETTEEECC---CCSBHHHHHHHT----TCCSSSCEEEE---SSSEECH--------HHHTTCBCCTTCEEEEE
T ss_pred EEEECCEEEEc---CCCcHHHHHHHc----CCCCCcEEEEE---CCEECCh--------HHcCcccCCCCCEEEEE
Confidence 47788998776 568999997766 88887776555 5543220 12334567888888775
No 188
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=23.64 E-value=34 Score=38.69 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.8
Q ss_pred chHHHHHHHHHHhhhhccCC
Q 006022 225 KYESIKKTLLHELAHMVYSE 244 (664)
Q Consensus 225 p~~~I~~tllHELaH~v~g~ 244 (664)
.|..++.++.||++|++.|+
T Consensus 263 ~~~~~~~liaHE~~H~W~g~ 282 (597)
T 4fgm_A 263 NYQTFLSLCCHEYFHSWNIK 282 (597)
T ss_dssp HHHHHHHHHHHHHHHTTBTT
T ss_pred hhhchhhhHhhhhheeeccc
Confidence 57788999999999999994
No 189
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=23.32 E-value=1.2e+02 Score=30.22 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=34.2
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCC
Q 006022 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKA 44 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPp 44 (664)
.|+|.|..-..+++|.+++.+|+.+|-.+|++.+|+..
T Consensus 1 ~i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e 38 (294)
T 1ef1_A 1 TISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLRE 38 (294)
T ss_dssp CEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCC
T ss_pred CEEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 37788888888899999999999999999999999864
No 190
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=23.18 E-value=44 Score=37.18 Aligned_cols=30 Identities=27% Similarity=0.363 Sum_probs=0.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHhCCCCCCceE
Q 006022 20 VVEVNSGSPLKELGHELQKLTDVKADTMRF 49 (664)
Q Consensus 20 ~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKL 49 (664)
.+.+...+|+.+|+..|++.+|||+++|+|
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~Rl 68 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRL 68 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEE
No 191
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=21.87 E-value=3e+02 Score=21.79 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=28.5
Q ss_pred eeEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEee
Q 006022 7 MLKVSAIWRGKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIV 51 (664)
Q Consensus 7 ~i~ItVk~~Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~ 51 (664)
.++|+|--.....+++++...||.+|..+| +.+++.--+.+
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vav 44 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGEL----EIPIETVVVKK 44 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEE
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEE
Confidence 355666666556677888889999998887 66665543333
No 192
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.58 E-value=90 Score=26.78 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=33.1
Q ss_pred CEEEEEEeCCCCCHHHHHHHHHHHhCCCCCCceEeec
Q 006022 16 GKKYVVEVNSGSPLKELGHELQKLTDVKADTMRFIVP 52 (664)
Q Consensus 16 Gk~~~i~l~~d~TV~dLK~~Ie~lTgVPpe~QKLL~p 52 (664)
.++|+|.++..+|=.+.|++++.+++|.+..-.-+..
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~ 59 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLIT 59 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEc
Confidence 3689999999999999999999999999988777763
Done!