BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006023
(664 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KLN|A Chain A, Solution Structure Of Stas Domain Of Rv1739c From M.
Tuberculosis
Length = 130
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
Query: 526 DISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVII 585
DI +P A + PG++ R ++ L CFANA R R + V ++ ++E ++
Sbjct: 3 DIDDYPQAKRVPGLVVYRYDAPL-CFANAEDFRRRALTVVDQDPGQVE--------WFVL 53
Query: 586 DMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLS 645
+ +++ +D + + L++L +L GI MA + + L++A LLD+IG+ ++++
Sbjct: 54 NAESNVEVDLTALDALDQLRTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMT 113
Query: 646 VAEAMEA 652
+ A++A
Sbjct: 114 LPTAVQA 120
>pdb|3LLO|A Chain A, Crystal Structure Of The Stas Domain Of Motor Protein
Prestin (Anion Transporter Slc26a5)
Length = 143
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 510 PGIELQGRLPRTDTYGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQ 569
P + G+LP TD Y DI + + PGI +IN+ ++ +AN++ + R
Sbjct: 2 PSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAPIY-YANSDLYSSALKRKTGVNG 60
Query: 570 DELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHKLK 629
E I VI+D + +D+ G+ L + K+ GI + +A QV++ L
Sbjct: 61 SE-------NIHTVILDFTQVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLT 113
Query: 630 SAKLLDR 636
S + +
Sbjct: 114 SNRFFEN 120
>pdb|1EGZ|A Chain A, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
Enzyme
pdb|1EGZ|B Chain B, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
Enzyme
pdb|1EGZ|C Chain C, Cellulase Cel5 From Erwinia Chrysanthemi, A Family Gh 5-2
Enzyme
Length = 291
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 130 YTSVIPPLIYALMGSSREIAIGPVAVVSMLLSALMQNVQDPAADPVAYRKLVFTVTFFAG 189
+++ I P A++ + R AI P ++ + + QNV + + DP+ + + +T+ F+AG
Sbjct: 139 WSNTIKPYAEAVISAIR--AIDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTLHFYAG 196
Query: 190 V 190
Sbjct: 197 T 197
>pdb|3MGL|A Chain A, Crystal Structure Of Permease Family Protein From Vibrio
Cholerae
pdb|3MGL|B Chain B, Crystal Structure Of Permease Family Protein From Vibrio
Cholerae
pdb|4DGH|A Chain A, Structure Of Sulp Transporter Stas Domain From Vibrio
Cholerae Refined To 1.9 Angstrom Resolution
pdb|4DGH|B Chain B, Structure Of Sulp Transporter Stas Domain From Vibrio
Cholerae Refined To 1.9 Angstrom Resolution
Length = 130
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 575 TTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHKLKSAKLL 634
+ + T Q +I+ + D +GI LEE + GI+++++ +V KL A ++
Sbjct: 44 SIQETPQILILRLKWVPFXDITGIQTLEEXIQSFHKRGIKVLISGANSRVSQKLVKAGIV 103
Query: 635 DRIGKGCVYLSVAEAMEACLTS 656
+G+ VY A+ A LT
Sbjct: 104 KLVGEQNVYPVFEGALSAALTE 125
>pdb|2KA5|A Chain A, Nmr Structure Of The Protein Tm1081
Length = 125
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 563 RWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRW 622
+WV +E + + + +S+ +ID+ + V+ + K ++S+G + SP
Sbjct: 41 KWV------FDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNE 94
Query: 623 QVIHKLKSAKLLDRIGKGCVYLSVAEAME 651
+V ++ S LDRI K +Y +++EAME
Sbjct: 95 KV-ERVLSLTNLDRIVK--IYDTISEAME 120
>pdb|4EI7|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
pdb|4EI7|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gdp-Form
pdb|4EI9|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
pdb|4EI9|B Chain B, Crystal Structure Of Bacillus Cereus Tubz, Gtp-Form
Length = 389
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 519 PRTDTYGDISQFPMAIKTPGILTI 542
P +DT+ D S+F I TPG+L++
Sbjct: 228 PFSDTHFDASEFAQVINTPGVLSL 251
>pdb|4EI8|A Chain A, Crystal Structure Of Bacillus Cereus Tubz, Apo-Form
Length = 389
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 519 PRTDTYGDISQFPMAIKTPGILTI 542
P +DT+ D S+F I TPG+L++
Sbjct: 228 PFSDTHFDASEFAQVINTPGVLSL 251
>pdb|3F43|A Chain A, Crystal Structure Of A Putative Anti-sigma Factor
Antagonist (tm1081) From Thermotoga Maritima At 1.59 A
Resolution
Length = 125
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 563 RWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRW 622
+WV +E + + + +S+ +ID+ + V+ + K ++S+G + SP
Sbjct: 41 KWV------FDEFLNKGYNKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALVSPNE 94
Query: 623 QVIHKLKSAKLLDRIGKGCVYLSVAEAME 651
+V ++ S LDRI K +Y +++EA E
Sbjct: 95 KV-ERVLSLTNLDRIVK--IYDTISEAXE 120
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 297 LSVILSTLIVYLTKADKHGVKIVKHIKGGLNPSSAHQL 334
+ V+ + + YL DK KI+ H +GG NP + H+L
Sbjct: 322 IPVVATGNVHYLNPEDKIYRKILIHSQGGANPLNRHEL 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,785,621
Number of Sequences: 62578
Number of extensions: 560152
Number of successful extensions: 1489
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1479
Number of HSP's gapped (non-prelim): 13
length of query: 664
length of database: 14,973,337
effective HSP length: 105
effective length of query: 559
effective length of database: 8,402,647
effective search space: 4697079673
effective search space used: 4697079673
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)