Query 006023
Match_columns 664
No_of_seqs 403 out of 2224
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 13:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006023.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006023hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 100.0 2.2E-29 7.5E-34 274.3 32.1 333 96-471 14-361 (429)
2 3llo_A Prestin; STAS domain, c 99.9 4.1E-25 1.4E-29 205.7 13.3 141 509-657 1-142 (143)
3 4dgh_A Sulfate permease family 99.9 7.2E-22 2.5E-26 180.7 9.5 123 520-655 2-124 (130)
4 4dgf_A Sulfate transporter sul 99.9 8.5E-22 2.9E-26 181.4 9.2 125 517-655 2-127 (135)
5 2kln_A Probable sulphate-trans 99.8 2.5E-21 8.5E-26 177.1 11.1 124 524-656 1-124 (130)
6 3ny7_A YCHM protein, sulfate t 99.7 3.3E-18 1.1E-22 153.6 9.3 104 535-652 14-117 (118)
7 2ka5_A Putative anti-sigma fac 99.6 3.3E-16 1.1E-20 142.0 10.0 109 532-655 15-124 (125)
8 3t6o_A Sulfate transporter/ant 99.6 9E-16 3.1E-20 138.2 8.9 106 535-654 11-120 (121)
9 1th8_B Anti-sigma F factor ant 99.6 1.5E-15 5.2E-20 135.2 8.8 106 536-655 10-115 (116)
10 4hyl_A Stage II sporulation pr 99.6 1.9E-15 6.4E-20 135.1 8.2 106 535-656 10-115 (117)
11 1h4x_A SPOIIAA, anti-sigma F f 99.6 5.6E-15 1.9E-19 131.9 10.8 105 536-655 9-113 (117)
12 1sbo_A Putative anti-sigma fac 99.6 1.2E-14 4E-19 128.0 11.8 101 535-649 10-110 (110)
13 3oiz_A Antisigma-factor antago 99.5 1.3E-14 4.5E-19 125.8 3.0 84 537-634 15-98 (99)
14 3zxn_A RSBS, anti-sigma-factor 99.4 1.4E-12 4.8E-17 117.6 11.9 105 537-655 11-116 (123)
15 3agd_A Salt-tolerant glutamina 96.0 0.0099 3.4E-07 63.0 7.2 84 537-621 324-445 (456)
16 3bl4_A Uncharacterized protein 90.2 0.43 1.5E-05 42.1 5.8 103 536-655 18-123 (124)
17 2q3l_A Uncharacterized protein 75.5 3.8 0.00013 35.9 5.5 107 536-654 18-126 (126)
18 3qe7_A Uracil permease; uracil 71.5 40 0.0014 36.0 13.3 83 374-457 41-137 (429)
19 3dcm_X AdoMet, uncharacterized 57.0 12 0.00041 35.3 5.0 62 588-655 24-100 (192)
20 2pr7_A Haloacid dehalogenase/e 51.2 22 0.00076 30.0 5.6 56 580-635 2-59 (137)
21 3pdw_A Uncharacterized hydrola 50.6 27 0.00093 33.8 6.8 56 579-634 5-65 (266)
22 2yx6_A Hypothetical protein PH 49.9 32 0.0011 29.4 6.4 58 603-663 54-112 (121)
23 3ghf_A Septum site-determining 47.8 49 0.0017 28.5 7.2 80 538-634 16-98 (120)
24 2csu_A 457AA long hypothetical 42.1 92 0.0031 33.4 9.8 84 552-654 351-442 (457)
25 3viv_A 441AA long hypothetical 40.8 54 0.0018 31.7 7.0 66 535-616 6-71 (230)
26 3rst_A Signal peptide peptidas 37.9 91 0.0031 30.1 8.3 68 537-616 3-83 (240)
27 3qgm_A P-nitrophenyl phosphata 37.3 35 0.0012 32.9 5.2 56 579-634 7-67 (268)
28 2i33_A Acid phosphatase; HAD s 36.9 19 0.00066 35.5 3.2 57 577-634 56-144 (258)
29 2yxb_A Coenzyme B12-dependent 35.4 1.2E+02 0.0042 27.2 8.2 69 578-654 68-140 (161)
30 3nvb_A Uncharacterized protein 35.3 1.9E+02 0.0064 30.3 10.6 53 578-630 220-292 (387)
31 3epr_A Hydrolase, haloacid deh 35.2 29 0.001 33.6 4.2 56 579-634 4-64 (264)
32 2fp4_B Succinyl-COA ligase [GD 34.8 1.5E+02 0.0052 31.0 9.9 84 552-654 300-389 (395)
33 3ib6_A Uncharacterized protein 33.7 43 0.0015 30.6 4.9 58 580-637 3-80 (189)
34 2wfb_A Putative uncharacterize 32.3 82 0.0028 26.7 6.1 55 603-660 58-114 (120)
35 1eo1_A Hypothetical protein MT 32.2 69 0.0024 27.3 5.7 54 603-659 56-110 (124)
36 2oyc_A PLP phosphatase, pyrido 29.1 80 0.0027 31.2 6.4 55 580-634 21-80 (306)
37 3n07_A 3-deoxy-D-manno-octulos 29.1 28 0.00096 32.6 2.7 71 579-653 24-108 (195)
38 3cz5_A Two-component response 29.0 1.4E+02 0.0048 25.4 7.3 71 579-654 51-123 (153)
39 3eod_A Protein HNR; response r 28.6 2E+02 0.0068 23.4 8.1 74 578-656 50-126 (130)
40 3grc_A Sensor protein, kinase; 27.8 76 0.0026 26.6 5.2 59 578-639 49-110 (140)
41 3cnb_A DNA-binding response re 27.3 1.5E+02 0.0051 24.6 7.1 72 579-653 54-127 (143)
42 1o13_A Probable NIFB protein; 27.0 83 0.0028 27.5 5.3 54 603-659 67-121 (136)
43 4e7p_A Response regulator; DNA 26.8 84 0.0029 26.9 5.4 72 578-654 65-138 (150)
44 2re2_A Uncharacterized protein 26.6 92 0.0031 27.3 5.5 52 603-658 70-122 (136)
45 3eul_A Possible nitrate/nitrit 26.6 1.1E+02 0.0036 26.2 6.0 71 579-654 61-133 (152)
46 1dz3_A Stage 0 sporulation pro 26.3 2.6E+02 0.0087 22.8 8.4 75 579-657 48-124 (130)
47 2qr3_A Two-component system re 25.8 2.1E+02 0.0071 23.6 7.8 74 579-654 47-124 (140)
48 2gmw_A D,D-heptose 1,7-bisphos 25.7 55 0.0019 30.5 4.2 55 579-633 24-104 (211)
49 1rdu_A Conserved hypothetical 25.7 61 0.0021 27.3 4.1 55 603-660 53-108 (116)
50 2qxy_A Response regulator; reg 25.6 1.2E+02 0.004 25.5 6.0 70 578-653 47-118 (142)
51 3hv2_A Response regulator/HD d 25.4 1.4E+02 0.0048 25.5 6.7 57 578-639 57-116 (153)
52 3ij5_A 3-deoxy-D-manno-octulos 24.5 1.3E+02 0.0045 28.2 6.7 70 579-654 48-133 (211)
53 3hzh_A Chemotaxis response reg 24.4 1.3E+02 0.0046 25.8 6.4 56 579-639 83-140 (157)
54 3lte_A Response regulator; str 24.0 1.8E+02 0.0063 23.7 7.0 74 578-654 49-123 (132)
55 3kc2_A Uncharacterized protein 23.9 38 0.0013 35.1 2.8 69 579-649 12-86 (352)
56 3hdg_A Uncharacterized protein 23.5 65 0.0022 27.0 3.9 71 579-654 51-123 (137)
57 1zjj_A Hypothetical protein PH 23.1 67 0.0023 30.9 4.4 71 581-653 2-77 (263)
58 3kht_A Response regulator; PSI 22.8 82 0.0028 26.6 4.5 59 578-639 50-110 (144)
59 3jte_A Response regulator rece 22.5 1.7E+02 0.0057 24.4 6.5 70 578-652 48-119 (143)
60 2hx1_A Predicted sugar phospha 22.3 71 0.0024 31.1 4.4 56 579-634 13-73 (284)
61 2nu8_B SCS-beta, succinyl-COA 22.1 3.2E+02 0.011 28.4 9.6 83 552-653 293-381 (388)
62 1bts_A BAND 3 anion transport 21.6 47 0.0016 20.6 1.7 19 128-146 6-24 (26)
63 2ook_A Hypothetical protein; s 21.5 3.9 0.00013 35.9 -4.6 107 536-654 18-126 (127)
64 4dad_A Putative pilus assembly 21.4 3.5E+02 0.012 22.4 8.5 72 578-654 66-139 (146)
65 3f6c_A Positive transcription 20.9 83 0.0029 26.1 4.0 72 579-655 46-119 (134)
66 2qtd_A Uncharacterized protein 20.8 1.7E+02 0.0058 23.9 5.8 53 606-662 50-103 (105)
67 3gt7_A Sensor protein; structu 20.3 1.7E+02 0.0056 25.1 6.0 59 578-639 50-110 (154)
68 1tmy_A CHEY protein, TMY; chem 20.2 2.5E+02 0.0087 22.3 7.0 56 579-639 47-104 (120)
69 1tf7_A KAIC; homohexamer, hexa 20.1 1.2E+02 0.0042 32.8 6.2 42 578-621 370-416 (525)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.97 E-value=2.2e-29 Score=274.30 Aligned_cols=333 Identities=14% Similarity=0.103 Sum_probs=254.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhhhhhhHHHhhccCCccc-ccchH-HHHHHHHHHHHhhhcCCCCC
Q 006023 96 FKSDLMAGLTLASLSIPQSIGYANLAKLDPQYGLYTSVIPPLIYALMGSSREI-AIGPV-AVVSMLLSALMQNVQDPAAD 173 (664)
Q Consensus 96 l~~D~~aGltv~~~~iPq~~aya~laglpp~~GLyss~v~~liy~l~Gss~~~-~~Gp~-a~~sl~~~~~~~~~~~~~~~ 173 (664)
+++++++|++..+....-.++...+.|+||..++++|.++++++.+++++|.- ..|+. +..+.+.. +.. .
T Consensus 14 ~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~-i~~-~------ 85 (429)
T 3qe7_A 14 LLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLL-LLP-L------ 85 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHH-HGG-G------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHH-HHh-c------
Confidence 57899999998875444444444455999999999999999999998665643 36774 33333322 222 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh--hhh--HHHhhchHHHHHHHHHHHHHHHHHhhhcccccccccCCCCcHHHHHHH
Q 006023 174 PVAYRKLVFTVTFFAGVFQSVFGLF--RLG--FLVDFLSHAAIVGFMAGAAIVIGLQQLKGLLGISHFTNKTDVVSVLGS 249 (664)
Q Consensus 174 ~~~~~~~~~~~t~l~Gv~~~~lg~l--rlg--~l~~flp~~vi~Gf~~g~gl~i~~~Ql~~~lG~~~~~~~~~~~~~~~~ 249 (664)
.++.+...++++|++++++|++ |+| ++.|++|+.|++.+++.+|+.+...+++...|... ..
T Consensus 86 ---g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~---~~-------- 151 (429)
T 3qe7_A 86 ---GYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPA---EG-------- 151 (429)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCB---TT--------
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCC---CC--------
Confidence 2678899999999999999998 775 89999999999999999999999888876433211 00
Q ss_pred HHHhcCcCCcchhhHHHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHHHHHHHhhhcCCCCeeEeeccc-CCCCC
Q 006023 250 VFSSLHHSYWYPLNFVLGCSFLIFLLIARFIGRRNKKLFWLPAIAPLLSVILSTLIVYLTKADKHGVKIVKHIK-GGLNP 328 (664)
Q Consensus 250 ~~~~~~~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~ip~~~~Li~vi~~t~~~~~~~~~~~~v~~vg~ip-~glp~ 328 (664)
+. .++.++.+++.++++++++.++.|++.| .++.|+++++++++++.++..+ .+.+++.| .++|.
T Consensus 152 -----~~--~~~~~~~la~~tl~iii~~~~~~kg~~~-----~~aiLigivvg~~~a~~~G~~d--~~~v~~a~~~~lP~ 217 (429)
T 3qe7_A 152 -----QT--PDSKTIIISITTLAVTVLGSVLFRGFLA-----IIPILIGVLVGYALSFAMGIVD--TTPIINAHWFALPT 217 (429)
T ss_dssp -----BC--CCHHHHHHHHHHHHHHHHHHHSSSTTTT-----THHHHHHHHHHHHHHHHHHHTT--SSHHHHSCSSCCCC
T ss_pred -----cc--ccHHHHHHHHHHHHHHHHHHHHhcccch-----hhHHHHHHHHHHHHHHHhcCCC--cccccccccccccC
Confidence 11 5678889999999888887665555433 2378999999999999987422 22233333 35666
Q ss_pred CCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCc----cCCchHHHHHhHhHhHhhhcCcccccccchh
Q 006023 329 SSAHQLQLTGPHLGQTAKIGLISAVVALTEAIAVGRSFASIKGYH----LDGNKEMVAMGFMNIVGSLTSCYVATGSFSR 404 (664)
Q Consensus 329 p~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~----~d~nqEl~a~G~aNiv~s~fg~~p~t~s~sr 404 (664)
+..|++++ . .+...+.++++.+.|++...++.+++.|++ .+.|||+.++|++|+++++||++|.|++..+
T Consensus 218 ~~~P~f~~--~----~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en 291 (429)
T 3qe7_A 218 LYTPRFEW--F----AILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGEN 291 (429)
T ss_dssp CCCCCCCH--H----HHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHH
T ss_pred CCCCcccH--H----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHh
Confidence 66665443 2 333345677888999998888888777644 4679999999999999999999999987778
Q ss_pred hhhhhhcCCCcchhHHHHHHHHHHHHHH--hhHHhhhchHHHHHHHHHHHhccCCCHHHHHHH--HhcCcc
Q 006023 405 TAVNFSAGCQTVVSNIVMAITVLLSLEL--FTSLLYYTPIAILASIILSALPGLIDINEAINI--YKVDKL 471 (664)
Q Consensus 405 S~v~~~~G~~T~ls~iv~a~~~ll~ll~--l~~l~~~iP~~vLa~ili~~~~~li~~~~~~~l--~k~~~~ 471 (664)
++++..+|++||++.+++|+++++..++ ++++++.+|.++++|+.++ .++++....++.+ .|+|..
T Consensus 292 ~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~-lfg~i~~~Gi~~l~~~~v~~~ 361 (429)
T 3qe7_A 292 IGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLL-LYGVIGASGIRVLIESKVDYN 361 (429)
T ss_dssp HHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCC
Confidence 8889999999999999999988877654 7889999999999998766 8999999999888 777753
No 2
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=99.92 E-value=4.1e-25 Score=205.74 Aligned_cols=141 Identities=25% Similarity=0.421 Sum_probs=125.6
Q ss_pred CcCeeeccccCCCCcccCCCCCccccCCCCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEcc
Q 006023 509 RPGIELQGRLPRTDTYGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMS 588 (664)
Q Consensus 509 rp~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s 588 (664)
||++.++|++|+|+.|+++++|+++++.+++.++|++|+ |+|+|+++|++++.+.+++.. .++.+.+||||+
T Consensus 1 rP~~~~Lg~~~~t~~~~~~~~~~~~~~~~~v~v~~~~G~-L~f~~a~~~~~~l~~~~~~~~-------~~~~~~vvlDls 72 (143)
T 3llo_A 1 SPSYTVLGQLPDTDVYIDIDAYEEVKEIPGIKIFQINAP-IYYANSDLYSSALKRKTGVNG-------SENIHTVILDFT 72 (143)
T ss_dssp CCSEEEEEECTTSSCEEETTTSTTCBCCTTEEEEEECSC-HHHHHHHHHHHC------------------CCSEEEEECT
T ss_pred CCcEEEEEcCCCCCccccHHHCCCCccCCCeEEEEeCCC-eEechHHHHHHHHHHHHccCC-------CCCceEEEEECC
Confidence 799999999999999999999999999999999999999 999999999999988664210 135789999999
Q ss_pred CCCccchhHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccC-CcccccCHHHHHHHHhccC
Q 006023 589 NSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIG-KGCVYLSVAEAMEACLTSK 657 (664)
Q Consensus 589 ~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~~g~~~~i~-~~~if~tv~~Av~~~~~~~ 657 (664)
+|++||+||+++|.++.++++++|++++++|+++++++.|+++|+.+.++ ++++|+|++||+++++++|
T Consensus 73 ~v~~iDssgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~~if~s~~~Al~~~~~~~ 142 (143)
T 3llo_A 73 QVNFMDSVGVKTLAGIVKEYGDVGIYVYLAGCSAQVVNDLTSNRFFENPALKELLFHSIHDAVLGSQVRE 142 (143)
T ss_dssp TCCCCCHHHHHHHHHHHHHHHTTTCEEEEESCCHHHHHHHHHTTTTSSGGGGGGEESSHHHHHHHTSSCC
T ss_pred CCccccHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeeccCccceEECcHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999887 7889999999999998776
No 3
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=99.86 E-value=7.2e-22 Score=180.69 Aligned_cols=123 Identities=22% Similarity=0.324 Sum_probs=115.1
Q ss_pred CCCcccCCCCCccccCCCCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHH
Q 006023 520 RTDTYGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGIL 599 (664)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~ 599 (664)
+|+.|+|+++|++.+..+++.++|++|+ |+|+|+++|++++.+ +. ++.+.+||||++|++||+||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~v~~~~G~-L~f~~a~~~~~~l~~-~~-----------~~~~~vvlDls~v~~iDssgl~ 68 (130)
T 4dgh_A 2 NAEMSYELAQHGRSTLPRELAVYALEGP-FFFAAAETFERVMGS-IQ-----------ETPQILILRLKWVPFMDITGIQ 68 (130)
T ss_dssp CHHHHHHHHHTTCSSCCTTEEEEECCSS-CCHHHHHHHHHHHHH-SS-----------SCCSEEEEECTTCCCCCHHHHH
T ss_pred chhhhhhHhhccccCCCCCEEEEEEeee-EeehhHHHHHHHHHH-hc-----------cCCCEEEEECCCCCcccHHHHH
Confidence 5788999999999999999999999999 999999999999864 21 3468999999999999999999
Q ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhc
Q 006023 600 VLEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 655 (664)
Q Consensus 600 ~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~ 655 (664)
+|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|++||++++++
T Consensus 69 ~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~~~~ 124 (130)
T 4dgh_A 69 TLEEMIQSFHKRGIKVLISGANSRVSQKLVKAGIVKLVGEQNVYPVFEGALSAALT 124 (130)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHHHHHHTTHHHHHCGGGEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcccccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999974
No 4
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=99.85 E-value=8.5e-22 Score=181.44 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=108.7
Q ss_pred ccCCCCcccCCCCCccccCCC-CEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccch
Q 006023 517 RLPRTDTYGDISQFPMAIKTP-GILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDT 595 (664)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~-~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDs 595 (664)
++|+|+.|+|+++| ++.+.| ++.++|++|+ |+|+|+++|++++.+ +. ++.+.+||||++|++||+
T Consensus 2 ~i~gt~~~~~~~~~-~~~~~~~~i~v~~l~G~-L~f~~a~~~~~~l~~-~~-----------~~~~~vvlDls~v~~iDs 67 (135)
T 4dgf_A 2 NADGLEGMDDPDAT-SKKVVPLGVEIYEINGP-FFFGVADRLKGVLDV-IE-----------ETPKVFILRMRRVPVIDA 67 (135)
T ss_dssp --------CCTTCG-GGSCCCTTEEEEECCSS-BSHHHHHHHTTGGGG-CS-----------SCCSEEEEECTTCSCBCH
T ss_pred CCCCCCcccchhhh-ccccCCCCEEEEEeece-EEehhHHHHHHHHHH-hc-----------CCCcEEEEEcCCCCccCH
Confidence 67999999999999 677777 9999999999 999999999998854 11 346899999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhc
Q 006023 596 SGILVLEELHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 655 (664)
Q Consensus 596 sgl~~L~~l~~~l~~~gi~l~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~ 655 (664)
||+++|.++.++++++|++++++++++++++.|+++|+.+.++++++|+|++||++++++
T Consensus 68 sgl~~L~~~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~ 127 (135)
T 4dgf_A 68 TGMHALWEFQESCEKRGTILLLSGVSDRLYGALNRFGFIEALGEERVFDHIDKALAYAKL 127 (135)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEESCCHHHHHHHHHHTHHHHHCGGGBCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCccceeCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999874
No 5
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=99.85 E-value=2.5e-21 Score=177.11 Aligned_cols=124 Identities=26% Similarity=0.539 Sum_probs=114.4
Q ss_pred ccCCCCCccccCCCCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHH
Q 006023 524 YGDISQFPMAIKTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEE 603 (664)
Q Consensus 524 ~~~~~~~~~~~~~~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~ 603 (664)
|+|+++||++++.|++.|++++|+ |+|+|+++|++++.+.+++. .++.+.|||||++|++||+||+++|.+
T Consensus 1 ~~~~~~~~~~~~~~~v~v~~l~G~-L~f~~a~~~~~~l~~~~~~~--------~~~~~~vvlDls~v~~iDssgl~~L~~ 71 (130)
T 2kln_A 1 MHDIDDYPQAKRVPGLVVYRYDAP-LCFANAEDFRRRALTVVDQD--------PGQVEWFVLNAESNVEVDLTALDALDQ 71 (130)
T ss_dssp CCSSSCCCCCCCSSSEEEEECCSC-CBTTTHHHHHHHHHHHTTSS--------SSCCEEEEEECSCCSSSBCSTTTHHHH
T ss_pred CCChhhCcCcccCCCEEEEEECCc-eEechHHHHHHHHHHHHhcC--------CCCceEEEEECCCCChhhHHHHHHHHH
Confidence 788999999999999999999999 99999999999998765421 014689999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhcc
Q 006023 604 LHKKLASNGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 656 (664)
Q Consensus 604 l~~~l~~~gi~l~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~~ 656 (664)
+.++++++|++++++|+++++++.|+++|+.+.+|++++|+|++||+++++.+
T Consensus 72 ~~~~~~~~g~~l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~t~~~Al~~~~~~ 124 (130)
T 2kln_A 72 LRTELLRRGIVFAMARVKQDLRESLRAASLLDKIGEDHIFMTLPTAVQAFRRR 124 (130)
T ss_dssp HHHHHHTTTEEEEEECCSSHHHHHHHHCTTHHHHCTTEEESCHHHHHHHHTTC
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHHHHHcCChhhcCcceeECCHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999854
No 6
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=99.74 E-value=3.3e-18 Score=153.58 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=96.1
Q ss_pred CCCCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCE
Q 006023 535 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 614 (664)
Q Consensus 535 ~~~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~ 614 (664)
..+++.++|++|+ |+|+|++++++++.+.. ++.+.+|+||++|++||+||+++|.++.+++++ |++
T Consensus 14 ~~~~v~v~~l~G~-L~f~~a~~l~~~l~~~~------------~~~~~vilDl~~v~~iDssgl~~L~~~~~~~~~-g~~ 79 (118)
T 3ny7_A 14 VPDDVLVLRVIGP-LFFAAAEGLFTDLESRL------------EGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE-GCE 79 (118)
T ss_dssp CCTTEEEEEEESC-BCHHHHHHHHHHHHTTC------------TTCSEEEEEEEECCCBCHHHHHHHHHHHHHCCT-TCE
T ss_pred CCCCEEEEEEece-eEehhHHHHHHHHHHhc------------CCCcEEEEEcCCCCeecHHHHHHHHHHHHHHHC-CCE
Confidence 3568999999999 99999999999986532 236899999999999999999999999999999 999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHH
Q 006023 615 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEA 652 (664)
Q Consensus 615 l~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~ 652 (664)
++++++++++++.|+++|+.+.++++++|+|++||+++
T Consensus 80 l~l~~~~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~ 117 (118)
T 3ny7_A 80 LRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMAD 117 (118)
T ss_dssp EEEECCCHHHHHHHHHTTCCCBTTTEEEESSHHHHTTT
T ss_pred EEEecCCHHHHHHHHHcCChhhcChhhhcCCHHHHHhh
Confidence 99999999999999999999999999999999999864
No 7
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=99.65 E-value=3.3e-16 Score=141.98 Aligned_cols=109 Identities=18% Similarity=0.276 Sum_probs=98.4
Q ss_pred cccCCCCEEEEEEcCcceeeccHHHHHHHHHH-HHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHHh
Q 006023 532 MAIKTPGILTIRINSALFCFANANFIRERIMR-WVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLAS 610 (664)
Q Consensus 532 ~~~~~~~i~Ivrl~g~~L~F~na~~~~~~i~~-~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~ 610 (664)
+.+..+++.+++++|+ |+|+|++.+++.+.+ +++ .+.+.+++||++|++|||+|+++|.++.+++++
T Consensus 15 ~~~~~~~~~vv~l~G~-Ld~~~a~~l~~~l~~~~~~-----------~~~~~vvlDls~V~~iDSsGl~~L~~~~~~~~~ 82 (125)
T 2ka5_A 15 PYKIVDDVVILMPNKE-LNIENAHLFKKWVFDEFLN-----------KGYNKIFLVLSDVESIDSFSLGVIVNILKSISS 82 (125)
T ss_dssp CEEECSSCEEECCCSC-CSGGGTHHHHHHHHHHTTT-----------TTCCEEEEECTTCSCCCHHHHHHHHHHHHHHHH
T ss_pred cceeeCCEEEEEEecE-EecccHHHHHHHHHHHHhh-----------CCCCEEEEECCCCCEEcHHHHHHHHHHHHHHHH
Confidence 3455678999999999 999999999999987 543 235799999999999999999999999999999
Q ss_pred CCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhc
Q 006023 611 NGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 655 (664)
Q Consensus 611 ~gi~l~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~ 655 (664)
+|+++.++|+++++++.|+.+|+.+.+ .+|+|++||++++++
T Consensus 83 ~g~~l~l~~~~~~v~~~l~~~gl~~~~---~i~~s~~~Al~~~~~ 124 (125)
T 2ka5_A 83 SGGFFALVSPNEKVERVLSLTNLDRIV---KIYDTISEAMEEVRR 124 (125)
T ss_dssp HTCEEEEECCCHHHHHHHHHTTSTTTS---EEESSHHHHHTTTTC
T ss_pred cCCEEEEEeCCHHHHHHHHHcCCCceE---EecCCHHHHHHHhhc
Confidence 999999999999999999999998888 599999999987753
No 8
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=99.61 E-value=9e-16 Score=138.21 Aligned_cols=106 Identities=15% Similarity=0.113 Sum_probs=96.4
Q ss_pred CCCCEEEEEEcCcce---eeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHHh-
Q 006023 535 KTPGILTIRINSALF---CFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLAS- 610 (664)
Q Consensus 535 ~~~~i~Ivrl~g~~L---~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~- 610 (664)
+.+++.+++++|+ + +|.|++.+++++.+.+.+ .+.+.+|+||++|+||||+|+++|.++++++++
T Consensus 11 ~~~~~~vv~l~G~-l~~ld~~~~~~l~~~l~~~l~~----------~~~~~vvlDls~v~~iDSsGl~~L~~~~~~~~~~ 79 (121)
T 3t6o_A 11 HEAQVTVISFPAV-FQRLRETEVEQIASTFLAAMQG----------AQPRKVLIDLEGVEFFGSSFIELLVRGWKRIKED 79 (121)
T ss_dssp EETTEEEEECCGG-GSEECHHHHHHHHHHHHHTTCC----------SSSCEEEEECTTCCEECHHHHHHHHHHHHHHTTS
T ss_pred EECCEEEEEEccc-cccCchhhHHHHHHHHHHHHhh----------cCCCeEEEECCCCCEEcHHHHHHHHHHHHHHHHh
Confidence 4568999999999 8 899999999998765432 346899999999999999999999999999999
Q ss_pred CCCEEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 006023 611 NGIELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 654 (664)
Q Consensus 611 ~gi~l~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~ 654 (664)
+|+++.++|+++++++.|+.+|+.+.++ +|+|++||++.++
T Consensus 80 ~g~~l~l~~~~~~v~~~l~~~gl~~~~~---i~~~~~~Al~~~~ 120 (121)
T 3t6o_A 80 QQGVFALCSVSPYCVEVLQVTHIDEVWP---RYSTKQEALLAMA 120 (121)
T ss_dssp TTCEEEEESCCHHHHHHHTTCSGGGGSC---EESSHHHHHHHTC
T ss_pred cCCEEEEEeCCHHHHHHHHHhCccceec---ccCCHHHHHHHhc
Confidence 9999999999999999999999999884 9999999999764
No 9
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=99.60 E-value=1.5e-15 Score=135.19 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=97.1
Q ss_pred CCCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEE
Q 006023 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIEL 615 (664)
Q Consensus 536 ~~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l 615 (664)
.+++.+++++|+ ++|.|++.+++.+.+.+++ .+.+.+++||++|++||++|+++|.++.++++++|+++
T Consensus 10 ~~~~~vv~l~G~-l~~~~~~~l~~~l~~~~~~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 78 (116)
T 1th8_B 10 KQDVLIVRLSGE-LDHHTAEELREQVTDVLEN----------RAIRHIVLNLGQLTFMDSSGLGVILGRYKQIKNVGGQM 78 (116)
T ss_dssp ETTEEEEEEEEE-ESHHHHHHHHHHHHHHHHS----------SCCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCE
T ss_pred ECCEEEEEEeee-eccccHHHHHHHHHHHHhc----------CCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHhCCeE
Confidence 468999999999 9999999999999876542 23679999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhc
Q 006023 616 VMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 655 (664)
Q Consensus 616 ~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~ 655 (664)
.++|+++++++.|+.+|+.+.+ .+|+|++||++++++
T Consensus 79 ~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~~ 115 (116)
T 1th8_B 79 VVCAVSPAVKRLFDMSGLFKII---RVEADEQFALQALGV 115 (116)
T ss_dssp EEESCCHHHHHHHHHHTGGGTS---EEESSHHHHHHHTTC
T ss_pred EEEeCCHHHHHHHHHhCCceeE---EEeCCHHHHHHhccC
Confidence 9999999999999999998887 699999999998864
No 10
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=99.59 E-value=1.9e-15 Score=135.12 Aligned_cols=106 Identities=15% Similarity=0.203 Sum_probs=95.5
Q ss_pred CCCCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCE
Q 006023 535 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 614 (664)
Q Consensus 535 ~~~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~ 614 (664)
+.+++.+++++|+ ++|.|++.+++.+.+.+++ .. .+++||++|++||++|+++|.+++++++++|++
T Consensus 10 ~~~~~~v~~l~G~-ld~~~~~~l~~~l~~~~~~-----------~~-~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 76 (117)
T 4hyl_A 10 TEQGIDIITLHGH-LDTRSSPAVQAAVLPRVTA-----------KG-KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGA 76 (117)
T ss_dssp EETTEEEEEEEEE-ECSSSHHHHHHHHGGGCCT-----------TC-EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCE
T ss_pred EECCEEEEEEEeE-EcchhHHHHHHHHHHHHcc-----------CC-eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCE
Confidence 3468999999999 9999999999999764431 22 999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhcc
Q 006023 615 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 656 (664)
Q Consensus 615 l~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~~ 656 (664)
+.++|+++++++.|+.+|+.+.+ .+|+|++||++++..+
T Consensus 77 l~l~~~~~~v~~~l~~~gl~~~~---~i~~~~~~Al~~~~~~ 115 (117)
T 4hyl_A 77 LVLVGVSEEIRDTMEITGFWNFF---TACASMDEALRILGSE 115 (117)
T ss_dssp EEEECCCHHHHHHHHHHTCGGGC---EEESCHHHHHHHHCC-
T ss_pred EEEEeCCHHHHHHHHHhCcccee---eecCCHHHHHHHhccC
Confidence 99999999999999999999888 4999999999988754
No 11
>1h4x_A SPOIIAA, anti-sigma F factor antagonist; cell differentiation, crystallography, phosphorylation, sigma factor, sporulation; HET: SEP; 1.16A {Bacillus sphaericus} SCOP: c.13.2.1 PDB: 1h4z_A 1h4y_A
Probab=99.58 E-value=5.6e-15 Score=131.89 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=95.6
Q ss_pred CCCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEE
Q 006023 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIEL 615 (664)
Q Consensus 536 ~~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l 615 (664)
.+++.+++++|+ ++|.|++.+++.+.+.+++ ++.+.+++||++|++||++|+++|.+++++++++|+++
T Consensus 9 ~~~~~vl~l~G~-l~~~~~~~l~~~l~~~~~~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l 77 (117)
T 1h4x_A 9 TRETVVIRLFGE-LDHHAVEQIRAKISTAIFQ----------GAVTTIIWNFERLSFMDSSGVGLVLGRMRELEAVAGRT 77 (117)
T ss_dssp ETTEEEEEEEEE-ECHHHHHHHHHHHHHHHHH----------TSCSEEEEEEEEEEEECTHHHHHHHHHHHHHHTTTCEE
T ss_pred eCCEEEEEEEeE-EchhhHHHHHHHHHHHHhc----------CCCCEEEEECCCCcEechHHHHHHHHHHHHHHHcCCEE
Confidence 468999999999 9999999999999876542 23578999999999999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhc
Q 006023 616 VMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 655 (664)
Q Consensus 616 ~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~ 655 (664)
.++|+++++++.|+.+|+.+.+ +|+|++||++++++
T Consensus 78 ~l~~~~~~v~~~l~~~gl~~~~----i~~~~~~Al~~~~~ 113 (117)
T 1h4x_A 78 ILLNPSPTMRKVFQFSGLGPWM----MDATEEEAIDRVRG 113 (117)
T ss_dssp EEESCCHHHHHHHHHTTCGGGE----ECSCHHHHHHHTC-
T ss_pred EEEeCCHHHHHHHHHhCCceEE----EeCCHHHHHHHHHH
Confidence 9999999999999999998877 89999999998764
No 12
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=99.57 E-value=1.2e-14 Score=128.02 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=91.7
Q ss_pred CCCCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCE
Q 006023 535 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 614 (664)
Q Consensus 535 ~~~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~ 614 (664)
+.+++.+++++|+ ++|.|++.+++.+.+.+.+ .+.+.+++||++|+++|++|+++|.+++++++++|++
T Consensus 10 ~~~~~~vv~l~G~-l~~~~~~~l~~~l~~~~~~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~ 78 (110)
T 1sbo_A 10 EQDDKAIVRVQGD-IDAYNSSELKEQLRNFIST----------TSKKKIVLDLSSVSYMDSAGLGTLVVILKDAKINGKE 78 (110)
T ss_dssp ECSSEEEEEEESC-BSTTTTTHHHHHHHTHHHH----------CSCSEEEEECTTCCCBCHHHHHHHHHHHHHHHHTTCE
T ss_pred EeCCEEEEEEeeE-EccccHHHHHHHHHHHHhc----------CCCcEEEEECCCCcEEccHHHHHHHHHHHHHHHcCCE
Confidence 3568999999999 9999999999999876543 2347899999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHCCCccccCCcccccCHHHH
Q 006023 615 LVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEA 649 (664)
Q Consensus 615 l~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~A 649 (664)
+.++|+++++++.|+.+|+.+.++ +|+|++||
T Consensus 79 l~l~~~~~~v~~~l~~~gl~~~~~---i~~~~~~A 110 (110)
T 1sbo_A 79 FILSSLKESISRILKLTHLDKIFK---ITDTVEEA 110 (110)
T ss_dssp EEEESCCHHHHHHHHHTTCGGGSC---BCSSGGGC
T ss_pred EEEEeCCHHHHHHHHHhCccceee---ccCCcccC
Confidence 999999999999999999998885 99999876
No 13
>3oiz_A Antisigma-factor antagonist, STAS; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, STAS domain; 1.65A {Rhodobacter sphaeroides} PDB: 3lkl_A
Probab=99.46 E-value=1.3e-14 Score=125.77 Aligned_cols=84 Identities=14% Similarity=0.134 Sum_probs=72.3
Q ss_pred CCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEE
Q 006023 537 PGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELV 616 (664)
Q Consensus 537 ~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~ 616 (664)
+++.+++++|+ |+|+|+++|++++.. . ++.+.+|+||++|+|||+||+++|.++.++++++|+++.
T Consensus 15 g~~~v~~l~G~-L~f~~a~~~~~~l~~---~----------~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~ 80 (99)
T 3oiz_A 15 GRERIYRVEGQ-LFYASVEDFMAAFDF---R----------EALDRVVIDVSRAHIWDISSVQALDMAVLKFRREGAEVR 80 (99)
T ss_dssp SSEEEEEEEEE-ECGGGHHHHHHTCCT---T----------SCCSEEEEEEEEEEECSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEEEEeeE-EehhhHHHHHHHHhh---c----------CCCCEEEEECCCCCccCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46899999999 999999999998852 1 346899999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHHCCCc
Q 006023 617 MASPRWQVIHKLKSAKLL 634 (664)
Q Consensus 617 la~~~~~v~~~L~~~g~~ 634 (664)
++++++++++.|+++|+.
T Consensus 81 l~~~~~~v~~~l~~~g~~ 98 (99)
T 3oiz_A 81 IVGMNEASETMVDRLAIH 98 (99)
T ss_dssp EESHHHHHTTCC------
T ss_pred EEcCCHHHHHHHHHhcCC
Confidence 999999999999999875
No 14
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=99.40 E-value=1.4e-12 Score=117.58 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=94.6
Q ss_pred CCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEE
Q 006023 537 PGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELV 616 (664)
Q Consensus 537 ~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~ 616 (664)
.++.++++.|+ +++.+++.+++++.+.+.+ .+.+.+|+|+++|+++|++|++.|.++++.++..|.+++
T Consensus 11 ~~vlvv~l~G~-lD~~~a~~l~~~ll~~i~~----------~~~~~vIlDlsgV~~iDs~g~~~L~~~~~~~~l~G~~~~ 79 (123)
T 3zxn_A 11 DDYWVVAIEET-LHDQSVIQFKEELLHNITG----------VAGKGLVIDISALEVVDEFVTRVLIEISRLAELLGLPFV 79 (123)
T ss_dssp TTEEEEECCCC-C-CHHHHHHHHHHHHHHTS----------SCCSEEEEECTTCSSCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCEEEEEEeEe-eCHHHHHHHHHHHHHHHHh----------cCCCEEEEEcCCCCcccHHHHHHHHHHHHHHHHCCCEEE
Confidence 35899999999 9999999999999887653 357899999999999999999999999999999999999
Q ss_pred EEcCCHHHHHHHHHCCCc-cccCCcccccCHHHHHHHHhc
Q 006023 617 MASPRWQVIHKLKSAKLL-DRIGKGCVYLSVAEAMEACLT 655 (664)
Q Consensus 617 la~~~~~v~~~L~~~g~~-~~i~~~~if~tv~~Av~~~~~ 655 (664)
++|.+|++.+.|...|+. +.+ .+|.|+++|++.++.
T Consensus 80 l~Gi~p~va~~l~~~G~~l~~i---~~~~~l~~Al~~l~~ 116 (123)
T 3zxn_A 80 LTGIKPAVAITLTEMGLDLRGM---ATALNLQKGLDKLKN 116 (123)
T ss_dssp EECCCHHHHHHHHHTTCCSTTS---EEESSHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHhCCCccce---EEECCHHHHHHHHHH
Confidence 999999999999999995 555 599999999998763
No 15
>3agd_A Salt-tolerant glutaminase; glutaminase super family, hydrolase; 2.20A {Micrococcus luteus} PDB: 3age_A* 3if5_A 3ih8_A 3ih9_A 3iha_A* 3ihb_A 2dfw_A
Probab=96.00 E-value=0.0099 Score=63.02 Aligned_cols=84 Identities=15% Similarity=0.334 Sum_probs=67.0
Q ss_pred CCEEEEEEcCcceeeccHHHHHHHHHHHHHh-------------------hhhh----------------h---hhhcCC
Q 006023 537 PGILTIRINSALFCFANANFIRERIMRWVTE-------------------EQDE----------------L---EETTKR 578 (664)
Q Consensus 537 ~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~-------------------~~~~----------------~---~~~~~~ 578 (664)
+++.+++++|. +.|+.++.+.+++.+.... ..++ . .+....
T Consensus 324 ~~~~~~~l~g~-~~f~~ae~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (456)
T 3agd_A 324 GDRVFLHLQGV-IRFGGAEAVLDALTDLRTGAEKPGTGWDAAVYPRWQEAAADRAALSAATGGGAVHEAAAAAARDENDG 402 (456)
T ss_dssp TTEEEEEEEEE-ESHHHHHHHHHHHHHTCCC-------CCTTTCHHHHHHHHSHHHHHHHHCCTTTHHHHHHHC---CCC
T ss_pred CcEEEEEeece-echhHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 46999999999 9999999999888764100 0000 0 001134
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCC
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR 621 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~ 621 (664)
..+.||||+++|+.+|..|..++.+..++++..|.++++..+.
T Consensus 403 ~~~~vv~d~~~v~~~~~~~~~~~~~~~~~l~~~g~~v~~~d~~ 445 (456)
T 3agd_A 403 PIRTVVLNLARVDRIDDVGRRLIAEGVRRLQADGVRVEVEDPE 445 (456)
T ss_dssp CCCEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCcEEEEEeeecccccHHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 6789999999999999999999999999999999999999886
No 16
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=90.17 E-value=0.43 Score=42.09 Aligned_cols=103 Identities=12% Similarity=0.059 Sum_probs=68.0
Q ss_pred CCCEEEEEEcC--cceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCC
Q 006023 536 TPGILTIRINS--ALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGI 613 (664)
Q Consensus 536 ~~~i~Ivrl~g--~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi 613 (664)
.+||+.+++.+ . ++-..+..+-.++.+ +.+ .+...+++|++....++..+-+.+.+-. .=.
T Consensus 18 ~dGIl~~~~~~~~~-i~~e~A~~~~~~~~~-l~~----------~~~~~vL~D~r~~~~~s~~AR~~~~~~~-----~~~ 80 (124)
T 3bl4_A 18 GDGILRLTWPRGAA-ITAADAERAMLRVNQ-LCG----------DDRHPMLVDMATTADVSRGARAVFGRPC-----QAS 80 (124)
T ss_dssp TTSCEEEECSSSSC-CCHHHHHHHHHHHHH-HHT----------TCCEEEEEECCSSTHHHHHHHHHHCCCC-----CEE
T ss_pred CCCEEEEEEcCCCc-cCHHHHHHHHHHHHH-HhC----------CCceEEEEEcccccCCCHHHHHHHhCcc-----cee
Confidence 46999999999 5 666666666666655 222 3458999999999889998888777722 123
Q ss_pred EEEEEcCCHHHHHHHHH-CCCccccCCcccccCHHHHHHHHhc
Q 006023 614 ELVMASPRWQVIHKLKS-AKLLDRIGKGCVYLSVAEAMEACLT 655 (664)
Q Consensus 614 ~l~la~~~~~v~~~L~~-~g~~~~i~~~~if~tv~~Av~~~~~ 655 (664)
.+.+.+.++-.+.+-+. .++...-.+.++|.|.+||++|..+
T Consensus 81 a~Al~g~s~~~r~ia~~~l~~~~~~~pt~fF~te~eA~aWL~~ 123 (124)
T 3bl4_A 81 RIALLGSSPVDRVLANFFLGINAVPCPTKFFTSERDALTWLAL 123 (124)
T ss_dssp EEEEECSSGGGHHHHHHHHHHHCCSSCEEEESCHHHHHHHHTC
T ss_pred EEEEEcCCHHHHHHHHHHHHhcCCCCCceeeCCHHHHHHHHHh
Confidence 45666666533322111 1222222344799999999999864
No 17
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=75.49 E-value=3.8 Score=35.90 Aligned_cols=107 Identities=7% Similarity=0.027 Sum_probs=64.7
Q ss_pred CCCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHH--HHHHhCCC
Q 006023 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELH--KKLASNGI 613 (664)
Q Consensus 536 ~~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~--~~l~~~gi 613 (664)
.+++..++++|. +.=...+.+...+.+.+++.+ .+--.+.+|++.....+..+ +..++. ....++=-
T Consensus 18 ~~~vl~v~~~G~-lt~~d~~~l~~~l~~~l~~~~--------~~~i~ll~~~~~f~G~~~~a--~~~d~k~~~~h~~~~~ 86 (126)
T 2q3l_A 18 DDFYLAFKAVGK-LTHEDYEQMTPLLESALAGIK--------TPEIVALIDITELDGLSLHA--AWDDLKLGLKHGKEFK 86 (126)
T ss_dssp TEEEEEEEEEEE-ECHHHHHHHHHHHHHHTTTCC--------SSCEEEEEEEEEEEEECHHH--HHHHHHHHHHHGGGEE
T ss_pred CCCEEEEEEEee-ECHHHHHHHHHHHHHHHHhCC--------CceEEEEEEecCCCCCCHHH--HHHHHHhhhhHHhcCC
Confidence 346899999999 776555555555555444321 11146777998777777443 233333 22223346
Q ss_pred EEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 006023 614 ELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 654 (664)
Q Consensus 614 ~l~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~ 654 (664)
++.+++-+.=+....+..+.+-. ++-+.|.+.++|.+|++
T Consensus 87 RiAvV~d~~W~~~~~~~~~~~~~-~evk~F~~~~~A~~Wl~ 126 (126)
T 2q3l_A 87 RVAIIGQGELQEWATRVANWFTP-GEFKFFEDKRDALDWLC 126 (126)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCS-SEEEEESCHHHHHHHHC
T ss_pred EEEEEcChHHHHHHHHHHhhccC-CceeccCCHHHHHHHhC
Confidence 78888776655555554444311 24478899999999863
No 18
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=71.53 E-value=40 Score=35.98 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=49.4
Q ss_pred cCCchHHHHHhHhHhHhhhcCcc--cc-cc-cchh----hhhhhhcCCCcchhHHH-HHHHHHHHHHHh-----hHHhhh
Q 006023 374 LDGNKEMVAMGFMNIVGSLTSCY--VA-TG-SFSR----TAVNFSAGCQTVVSNIV-MAITVLLSLELF-----TSLLYY 439 (664)
Q Consensus 374 ~d~nqEl~a~G~aNiv~s~fg~~--p~-t~-s~sr----S~v~~~~G~~T~ls~iv-~a~~~ll~ll~l-----~~l~~~ 439 (664)
.|++..+++-|++.++=+++++. |. -| +++- +++.. .|-..-+.+++ +|++.++..+++ ..+..+
T Consensus 41 l~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~i~~-~g~~~~~gavi~aGli~ill~~~~~~~g~~~l~~~ 119 (429)
T 3qe7_A 41 INPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLP-LGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVL 119 (429)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHHHGG-GCHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 46678999999999998887544 33 11 2222 11111 22222333333 333333333332 258899
Q ss_pred chHHHHHHHHHHHhccCC
Q 006023 440 TPIAILASIILSALPGLI 457 (664)
Q Consensus 440 iP~~vLa~ili~~~~~li 457 (664)
+|..+.+.++...++.+.
T Consensus 120 ~PpvviG~~i~~IGl~l~ 137 (429)
T 3qe7_A 120 FPPAAMGAIVAVIGLELA 137 (429)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCCeeeHHHHHHHHHHHH
Confidence 999999999988887765
No 19
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=56.96 E-value=12 Score=35.33 Aligned_cols=62 Identities=5% Similarity=0.032 Sum_probs=43.9
Q ss_pred cCCCccchhHHHHHHHHHHHHHhCC-CEEEEEcCCHHHHHHHHH--------CCC------ccccCCcccccCHHHHHHH
Q 006023 588 SNSMNIDTSGILVLEELHKKLASNG-IELVMASPRWQVIHKLKS--------AKL------LDRIGKGCVYLSVAEAMEA 652 (664)
Q Consensus 588 s~V~~IDssgl~~L~~l~~~l~~~g-i~l~la~~~~~v~~~L~~--------~g~------~~~i~~~~if~tv~~Av~~ 652 (664)
+.|+.+| +.++.+.++..| .++++++|...-.+.-++ .|- .|.+..-++++|++||++.
T Consensus 24 t~vtn~d------ihdiARamkt~Gl~~l~LV~P~~~~~~~a~~~~~~w~~~~Ga~~np~r~d~L~~a~vv~sL~eAl~~ 97 (192)
T 3dcm_X 24 TAVTNLD------VHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLED 97 (192)
T ss_dssp CCCCHHH------HHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHH
T ss_pred eeccccc------HHHHHHHHHhcCCceEEEECCccccHHHHHHHHHhhhcccCcccCcCHHHHhccCeEECCHHHHHHH
Confidence 4566666 567778888888 789999998754432222 222 3445556899999999999
Q ss_pred Hhc
Q 006023 653 CLT 655 (664)
Q Consensus 653 ~~~ 655 (664)
|++
T Consensus 98 ~~~ 100 (192)
T 3dcm_X 98 IES 100 (192)
T ss_dssp HHH
T ss_pred HHh
Confidence 984
No 20
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}
Probab=51.19 E-value=22 Score=30.03 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=37.7
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCcc
Q 006023 580 IQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLD 635 (664)
Q Consensus 580 ~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~~g~~~ 635 (664)
.+.+++|+.++-.=+..-..-..++.++++++|+++.++.- ...+.+.++..|+.+
T Consensus 2 ~k~i~~D~DgtL~~~~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~ 59 (137)
T 2pr7_A 2 MRGLIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNG 59 (137)
T ss_dssp CCEEEECSTTTTSSCHHHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTT
T ss_pred CcEEEEeccceecCCCccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHh
Confidence 47899999886532333445577888999999999987744 334555666655433
No 21
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=50.56 E-value=27 Score=33.78 Aligned_cols=56 Identities=25% Similarity=0.284 Sum_probs=41.4
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEE-----cCCHHHHHHHHHCCCc
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMA-----SPRWQVIHKLKSAKLL 634 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la-----~~~~~v~~~L~~~g~~ 634 (664)
..+.+++|+-++-.=+......-.+..++++++|++++++ .....+.+.++..|+.
T Consensus 5 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~ 65 (266)
T 3pdw_A 5 TYKGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIP 65 (266)
T ss_dssp CCSEEEEECSSSTTCHHHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 3789999999885433333344567788889999999999 3445677888888874
No 22
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=49.91 E-value=32 Score=29.42 Aligned_cols=58 Identities=17% Similarity=0.268 Sum_probs=43.3
Q ss_pred HHHHHHHhCCCEEEEEc-CCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhccCcccccC
Q 006023 603 ELHKKLASNGIELVMAS-PRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKFAALSN 663 (664)
Q Consensus 603 ~l~~~l~~~gi~l~la~-~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~~~~~~~~~ 663 (664)
.+.+.+.+.|+++++++ ..+...+.|+..|+.-..+ .-.+++||++.+.+.+......
T Consensus 54 ~~~~~L~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~v~eal~~~~~g~L~~~~~ 112 (121)
T 2yx6_A 54 DLPNFIKDHGAKIVLTYGIGRRAIEYFNSLGISVVTG---VYGRISDVIKAFIGGKLKIDYD 112 (121)
T ss_dssp HHHHHHHHTTCCEEECSBCCHHHHHHHHHTTCEEECS---BCSBHHHHHHHHHTTCCCBCTT
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC---CCCCHHHHHHHHHcCCCCcCCC
Confidence 55666677899999995 5888999999999842222 2368999999988766655443
No 23
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=47.83 E-value=49 Score=28.50 Aligned_cols=80 Identities=16% Similarity=0.281 Sum_probs=54.2
Q ss_pred CEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCC-ccchhHHHHHHHHHHHHHhCCCEEE
Q 006023 538 GILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSM-NIDTSGILVLEELHKKLASNGIELV 616 (664)
Q Consensus 538 ~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~-~IDssgl~~L~~l~~~l~~~gi~l~ 616 (664)
+..++++... +-+.+++.+.+.+++..+ -=.-..||||++.+. .+| |.++.+.++++|..++
T Consensus 16 ~l~vl~l~~~-----d~~~l~~~L~~ki~~aP~------FF~~aPVVlDl~~l~~~~d------l~~L~~~l~~~gl~~v 78 (120)
T 3ghf_A 16 TLSVVHLHEA-----EPEVIRQALEDKIAQAPA------FLKHAPVVINVSGLESPVN------WPELHKIVTSTGLRII 78 (120)
T ss_dssp CCEEEEEESC-----CHHHHHHHHHHHHHHSHH------HHTTCEEEEEEEECCSSCC------HHHHHHHHHTTTCEEE
T ss_pred eEEEEEeCCC-----CHHHHHHHHHHHHHhChH------hhCCCcEEEEccccCChHH------HHHHHHHHHHcCCEEE
Confidence 4566666432 467788888877664210 012368999999886 333 6778888999998885
Q ss_pred -EEcCCHH-HHHHHHHCCCc
Q 006023 617 -MASPRWQ-VIHKLKSAKLL 634 (664)
Q Consensus 617 -la~~~~~-v~~~L~~~g~~ 634 (664)
+.+++++ ..+..+..|+.
T Consensus 79 GV~g~~~~~~~~~a~~~GLp 98 (120)
T 3ghf_A 79 GVSGCKDASLKVEIDRMGLP 98 (120)
T ss_dssp EEESCCCHHHHHHHHHHTCC
T ss_pred EEeCCCcHHHHHHHHHCCCC
Confidence 6666644 77788888884
No 24
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=42.06 E-value=92 Score=33.36 Aligned_cols=84 Identities=8% Similarity=-0.014 Sum_probs=51.9
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCc--cc--hhHHHHHHHHHHHHHhCCCEEEEEcC----CHH
Q 006023 552 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMN--ID--TSGILVLEELHKKLASNGIELVMASP----RWQ 623 (664)
Q Consensus 552 ~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~--ID--ssgl~~L~~l~~~l~~~gi~l~la~~----~~~ 623 (664)
++.+.+++.++..+++ +++..+++++..-.+ ++ ..+ +.+.+..++++ .+..++.+.. .++
T Consensus 351 a~~~~~~~al~~~l~d----------p~vd~vlv~~~~~~~Gg~~~~~~a-~~i~~al~~~~-~~kPvvv~~~~g~~~~~ 418 (457)
T 2csu_A 351 ARGEDYYRTAKLLLQD----------PNVDMLIAICVVPTFAGMTLTEHA-EGIIRAVKEVN-NEKPVLAMFMAGYVSEK 418 (457)
T ss_dssp CCHHHHHHHHHHHHHS----------TTCSEEEEEEECCCSTTCCSSHHH-HHHHHHHHHHC-CCCCEEEEEECTTTTHH
T ss_pred CCHHHHHHHHHHHhcC----------CCCCEEEEEccccccccCCchhHH-HHHHHHHHHhc-CCCCEEEEeCCCcchHH
Confidence 4567777777766553 457888887753322 32 222 33444444443 5666666432 355
Q ss_pred HHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 006023 624 VIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 654 (664)
Q Consensus 624 v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~ 654 (664)
.++.|+..|+ .+|.|.++|++++.
T Consensus 419 ~~~~L~~~Gi-------p~~~spe~Av~al~ 442 (457)
T 2csu_A 419 AKELLEKNGI-------PTYERPEDVASAAY 442 (457)
T ss_dssp HHHHHHTTTC-------CEESSHHHHHHHHH
T ss_pred HHHHHHhCCC-------CccCCHHHHHHHHH
Confidence 7788888775 48999999998764
No 25
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=40.75 E-value=54 Score=31.74 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=43.4
Q ss_pred CCCCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCE
Q 006023 535 KTPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIE 614 (664)
Q Consensus 535 ~~~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~ 614 (664)
..+.+.++.++|. ++-..++++.+.+.+.-+ ++.+.|+|....-.. | +....++++.+++....
T Consensus 6 ~~~~V~vI~i~g~-I~~~~~~~l~~~l~~a~~-----------~~~~~Ivl~inspGG-~---v~~~~~i~~~i~~~~~P 69 (230)
T 3viv_A 6 AKNIVYVAQIKGQ-ITSYTYDQFDRYITIAEQ-----------DNAEAIIIELDTPGG-R---ADAMMNIVQRIQQSKIP 69 (230)
T ss_dssp CCCEEEEEEEESC-BCHHHHHHHHHHHHHHHH-----------TTCSEEEEEEEBSCE-E---HHHHHHHHHHHHTCSSC
T ss_pred CCCeEEEEEEeCE-ECHHHHHHHHHHHHHHhc-----------CCCCEEEEEEeCCCc-C---HHHHHHHHHHHHhCCCC
Confidence 3457999999999 999998888888866421 246788886532221 1 23445666666666555
Q ss_pred EE
Q 006023 615 LV 616 (664)
Q Consensus 615 l~ 616 (664)
++
T Consensus 70 Vi 71 (230)
T 3viv_A 70 VI 71 (230)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 26
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=37.87 E-value=91 Score=30.13 Aligned_cols=68 Identities=6% Similarity=0.096 Sum_probs=44.9
Q ss_pred CCEEEEEEcCcceeec------------cHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHH
Q 006023 537 PGILTIRINSALFCFA------------NANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEEL 604 (664)
Q Consensus 537 ~~i~Ivrl~g~~L~F~------------na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l 604 (664)
++|.+++++|. +.=. +.+.+.+.+.+.-+ .++++.|+|+... ..-|..+.+.+.+.
T Consensus 3 ~~iavi~i~G~-I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~----------d~~v~~ivL~~~s-~Gg~~~~~~~i~~~ 70 (240)
T 3rst_A 3 SKIAVLEVSGT-IQDNGDSSSLLGADGYNHRTFLKNLERAKD----------DKTVKGIVLKVNS-PGGGVYESAEIHKK 70 (240)
T ss_dssp CEEEEEEEESC-BCCC---------CCCCHHHHHHHHHHHHH----------CTTEEEEEEEEEE-CCBCHHHHHHHHHH
T ss_pred CeEEEEEEEEE-EcCCCCcCcccccCCcCHHHHHHHHHHHHh----------CCCcEEEEEEecC-CCCCHHHHHHHHHH
Confidence 46888999888 7643 23455555544322 2568999998764 45677777777777
Q ss_pred HHHHHh-CCCEEE
Q 006023 605 HKKLAS-NGIELV 616 (664)
Q Consensus 605 ~~~l~~-~gi~l~ 616 (664)
.+++++ .+..++
T Consensus 71 l~~~~~~~~kPVi 83 (240)
T 3rst_A 71 LEEIKKETKKPIY 83 (240)
T ss_dssp HHHHHHHHCCCEE
T ss_pred HHHHHHhCCCeEE
Confidence 777776 455553
No 27
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=37.33 E-value=35 Score=32.91 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=40.7
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcC-----CHHHHHHHHHCCCc
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-----RWQVIHKLKSAKLL 634 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~-----~~~v~~~L~~~g~~ 634 (664)
..+.+++|+-++-.=+-.-+.--.+..++++++|++++++.. ...+.+.++..|+.
T Consensus 7 ~~kli~~DlDGTLl~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~ 67 (268)
T 3qgm_A 7 DKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLE 67 (268)
T ss_dssp CCSEEEEECBTTTEETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCC
T ss_pred cCCEEEEcCcCcEECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCC
Confidence 378999999987543332223356778888999999999944 35677888888884
No 28
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=36.91 E-value=19 Score=35.45 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=41.9
Q ss_pred CCCccEEEEEccCCCccchhH---------------------------HHHHHHHHHHHHhCCCEEEEEcCCH-----HH
Q 006023 577 KRTIQAVIIDMSNSMNIDTSG---------------------------ILVLEELHKKLASNGIELVMASPRW-----QV 624 (664)
Q Consensus 577 ~~~~~~vILD~s~V~~IDssg---------------------------l~~L~~l~~~l~~~gi~l~la~~~~-----~v 624 (664)
....+.+|+|+.++- +|+.. ..-..++.+.++++|+++.++.-++ .+
T Consensus 56 ~~~~kavifDlDGTL-ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~ 134 (258)
T 2i33_A 56 TEKKPAIVLDLDETV-LDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDAT 134 (258)
T ss_dssp CSSEEEEEECSBTTT-EECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHH
T ss_pred CCCCCEEEEeCcccC-cCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHH
Confidence 356889999999865 56541 1234568889999999999986654 46
Q ss_pred HHHHHHCCCc
Q 006023 625 IHKLKSAKLL 634 (664)
Q Consensus 625 ~~~L~~~g~~ 634 (664)
.+.|+..|+.
T Consensus 135 ~~~L~~~Gl~ 144 (258)
T 2i33_A 135 IKNLERVGAP 144 (258)
T ss_dssp HHHHHHHTCS
T ss_pred HHHHHHcCCC
Confidence 6778888875
No 29
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=35.38 E-value=1.2e+02 Score=27.19 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=43.3
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhCC---CEEEEEcCCHH-HHHHHHHCCCccccCCcccccCHHHHHHHH
Q 006023 578 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNG---IELVMASPRWQ-VIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 653 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~g---i~l~la~~~~~-v~~~L~~~g~~~~i~~~~if~tv~~Av~~~ 653 (664)
.+++.|.+-+..- +.+..+.++.+.+++.| +.+++-|...+ -.+.++..|....++++ .+.++|++.+
T Consensus 68 ~~~diV~lS~~~~-----~~~~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~~~~l~~~G~d~v~~~~---~~~~~~~~~~ 139 (161)
T 2yxb_A 68 EDVDVIGVSILNG-----AHLHLMKRLMAKLRELGADDIPVVLGGTIPIPDLEPLRSLGIREIFLPG---TSLGEIIEKV 139 (161)
T ss_dssp TTCSEEEEEESSS-----CHHHHHHHHHHHHHHTTCTTSCEEEEECCCHHHHHHHHHTTCCEEECTT---CCHHHHHHHH
T ss_pred cCCCEEEEEeech-----hhHHHHHHHHHHHHhcCCCCCEEEEeCCCchhcHHHHHHCCCcEEECCC---CCHHHHHHHH
Confidence 3467777765543 55677888888888764 67888776433 34457777875434322 1346677766
Q ss_pred h
Q 006023 654 L 654 (664)
Q Consensus 654 ~ 654 (664)
+
T Consensus 140 ~ 140 (161)
T 2yxb_A 140 R 140 (161)
T ss_dssp H
T ss_pred H
Confidence 5
No 30
>3nvb_A Uncharacterized protein; protein FKBH, protein fkbhstructural genomics, PSI-2, protei structure initiative; 1.71A {Bacteroides fragilis} PDB: 3slr_A
Probab=35.31 E-value=1.9e+02 Score=30.26 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=38.5
Q ss_pred CCccEEEEEccCCCcc-----c---------h----hHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHH
Q 006023 578 RTIQAVIIDMSNSMNI-----D---------T----SGILVLEELHKKLASNGIELVMASP--RWQVIHKLKS 630 (664)
Q Consensus 578 ~~~~~vILD~s~V~~I-----D---------s----sgl~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~ 630 (664)
.++|.+|+|+.++-.= | - ..-.-+.++.+.++++|+++.++.- ++.+.+.++.
T Consensus 220 ~~iK~lv~DvDnTL~~G~l~~dG~~~~~~~dg~g~g~~ypgv~e~L~~Lk~~Gi~laI~Snn~~~~v~~~l~~ 292 (387)
T 3nvb_A 220 KFKKCLILDLDNTIWGGVVGDDGWENIQVGHGLGIGKAFTEFQEWVKKLKNRGIIIAVCSKNNEGKAKEPFER 292 (387)
T ss_dssp CCCCEEEECCBTTTBBSCHHHHCGGGSBCSSSSSTHHHHHHHHHHHHHHHHTTCEEEEEEESCHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCCCCeecCCCceeEEeccCccccccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhh
Confidence 5789999999876422 1 1 1123578889999999999999844 4567778876
No 31
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=35.20 E-value=29 Score=33.61 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=40.4
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEc---C--CHHHHHHHHHCCCc
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMAS---P--RWQVIHKLKSAKLL 634 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~---~--~~~v~~~L~~~g~~ 634 (664)
..+.+++|+.++-.-+-..+..-.+..++++++|++++++. . ...+.+.++..|+.
T Consensus 4 ~~kli~~DlDGTLl~~~~~i~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~ 64 (264)
T 3epr_A 4 AYKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVE 64 (264)
T ss_dssp CCCEEEECCBTTTEETTEECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCC
T ss_pred CCCEEEEeCCCceEeCCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 36899999998854333333445577788888999999997 2 34677788888874
No 32
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=34.79 E-value=1.5e+02 Score=31.00 Aligned_cols=84 Identities=8% Similarity=0.179 Sum_probs=54.4
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEc-cCCCccchhHHHHHHHHHHHHHhCCCEE--EEEcCCHH-HHHH
Q 006023 552 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDM-SNSMNIDTSGILVLEELHKKLASNGIEL--VMASPRWQ-VIHK 627 (664)
Q Consensus 552 ~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~-s~V~~IDssgl~~L~~l~~~l~~~gi~l--~la~~~~~-v~~~ 627 (664)
++.+.+++.++-.+++ ++++.+++.. .++...|..+ +.+.+..+++. .++.+ .+.+.+.+ -++.
T Consensus 300 a~~e~~~~al~~il~d----------~~v~~ilvni~ggi~~~d~vA-~gii~a~~~~~-~~~Pivvrl~G~n~~~g~~~ 367 (395)
T 2fp4_B 300 VKESQVYQAFKLLTAD----------PKVEAILVNIFGGIVNCAIIA-NGITKACRELE-LKVPLVVRLEGTNVHEAQNI 367 (395)
T ss_dssp CCHHHHHHHHHHHHHC----------TTCCEEEEEEEESSSCHHHHH-HHHHHHHHHHT-CCSCEEEEEEETTHHHHHHH
T ss_pred CCHHHHHHHHHHHhCC----------CCCCEEEEEecCCccCcHHHH-HHHHHHHHhcC-CCCeEEEEcCCCCHHHHHHH
Confidence 4566666665544432 5677777765 6777777776 55556666653 34444 45677654 6678
Q ss_pred HHHCCCccccCCcccc--cCHHHHHHHHh
Q 006023 628 LKSAKLLDRIGKGCVY--LSVAEAMEACL 654 (664)
Q Consensus 628 L~~~g~~~~i~~~~if--~tv~~Av~~~~ 654 (664)
|+.+|+ .+| +|.+||++.+-
T Consensus 368 L~~~gl-------~~~~~~~~~~Aa~~~v 389 (395)
T 2fp4_B 368 LTNSGL-------PITSAVDLEDAAKKAV 389 (395)
T ss_dssp HHHTCS-------CCEECSSHHHHHHHHH
T ss_pred HHHCCC-------ceEeCCCHHHHHHHHH
Confidence 888875 255 99999998653
No 33
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=33.65 E-value=43 Score=30.61 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=39.0
Q ss_pred ccEEEEEccCCCcc---------------chhHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHCCCcccc
Q 006023 580 IQAVIIDMSNSMNI---------------DTSGILVLEELHKKLASNGIELVMASPR-----WQVIHKLKSAKLLDRI 637 (664)
Q Consensus 580 ~~~vILD~s~V~~I---------------Dssgl~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~~~g~~~~i 637 (664)
++.|++|+.++-.- +..-..-..++.++++++|+++.++.-+ ..+.+.++..|+.+.+
T Consensus 3 ik~vifD~DgtL~~~~~~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~~~f 80 (189)
T 3ib6_A 3 LTHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYF 80 (189)
T ss_dssp CCEEEECTBTTTBCCCTTSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCGGGE
T ss_pred ceEEEEcCCCceeeccchhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCchhhe
Confidence 57788888765511 1122233567788889999999877532 5678889999986544
No 34
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=32.27 E-value=82 Score=26.67 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=40.6
Q ss_pred HHHHHHHhCCCEEEEEc-CCHHHHHHHHHCCCccccCCccccc-CHHHHHHHHhccCccc
Q 006023 603 ELHKKLASNGIELVMAS-PRWQVIHKLKSAKLLDRIGKGCVYL-SVAEAMEACLTSKFAA 660 (664)
Q Consensus 603 ~l~~~l~~~gi~l~la~-~~~~v~~~L~~~g~~~~i~~~~if~-tv~~Av~~~~~~~~~~ 660 (664)
.+.+.+.+.|+++++|+ ..+...+.|+..|+.-..+ .-. +++||++.+.+.+...
T Consensus 58 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~g~~i~eal~~~~~g~L~~ 114 (120)
T 2wfb_A 58 NAAQVLAKSGAGVLLTGYVGPKAFQALQAAGIKVGQD---LEGLTVRQAVQRFLDGQVPM 114 (120)
T ss_dssp HHHHHHHHHTEEEEECSCCCHHHHHHHHHTTCEEECC---CTTSBHHHHHHHHHTTCSCB
T ss_pred HHHHHHHHCCCCEEEECCCCHhHHHHHHHCCCEEEEc---CCCCcHHHHHHHHHcCCCCc
Confidence 45566666899999995 4888999999999842222 234 8999999988766544
No 35
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=32.17 E-value=69 Score=27.31 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=40.2
Q ss_pred HHHHHHHhCCCEEEEEc-CCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhccCcc
Q 006023 603 ELHKKLASNGIELVMAS-PRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKFA 659 (664)
Q Consensus 603 ~l~~~l~~~gi~l~la~-~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~~~~~ 659 (664)
.+.+.+.+.|+++++|+ ..+...+.|+..|+.-..+ .-.+++||++.+.+.+..
T Consensus 56 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~i~eal~~~~~g~L~ 110 (124)
T 1eo1_A 56 RTAQIIANNGVKAVIASSPGPNAFEVLNELGIKIYRA---TGTSVEENLKLFTEGNLE 110 (124)
T ss_dssp THHHHHHHTTCCEEEECCSSHHHHHHHHHHTCEEEEC---CSCCHHHHHHHHHTTCSC
T ss_pred HHHHHHHHCCCCEEEECCcCHHHHHHHHHCCCEEEEc---CCCCHHHHHHHHHhCCCC
Confidence 45566678899999995 4888999999999842222 236899999988765544
No 36
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Probab=29.13 E-value=80 Score=31.24 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=39.6
Q ss_pred ccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcC-----CHHHHHHHHHCCCc
Q 006023 580 IQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-----RWQVIHKLKSAKLL 634 (664)
Q Consensus 580 ~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~-----~~~v~~~L~~~g~~ 634 (664)
.+.+++|+.++-.-+..-...-.+..++++++|++++++.- ...+.+.++..|+.
T Consensus 21 ~k~i~~D~DGTL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g~~ 80 (306)
T 2oyc_A 21 AQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFG 80 (306)
T ss_dssp CSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCC
T ss_pred CCEEEECCCCcEecCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 58999999887654443333456677888899999998862 24566788888773
No 37
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=29.05 E-value=28 Score=32.57 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=45.9
Q ss_pred CccEEEEEccCCC-----ccchhHHHHHHHH-------HHHHHhCCCEEEEEc--CCHHHHHHHHHCCCccccCCccccc
Q 006023 579 TIQAVIIDMSNSM-----NIDTSGILVLEEL-------HKKLASNGIELVMAS--PRWQVIHKLKSAKLLDRIGKGCVYL 644 (664)
Q Consensus 579 ~~~~vILD~s~V~-----~IDssgl~~L~~l-------~~~l~~~gi~l~la~--~~~~v~~~L~~~g~~~~i~~~~if~ 644 (664)
.++.|++|+.++- +.+..+ ..+.++ .+.++++|+++.++. ....+.+.++..|+.+.+.. . .
T Consensus 24 ~ik~vifD~DGtL~d~~~~~~~~~-~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~~~~~--~-k 99 (195)
T 3n07_A 24 QIKLLICDVDGVFSDGLIYMGNQG-EELKTFHTRDGYGVKALMNAGIEIAIITGRRSQIVENRMKALGISLIYQG--Q-D 99 (195)
T ss_dssp TCCEEEECSTTTTSCSCCEECTTS-CEECCCCTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCCEEECS--C-S
T ss_pred CCCEEEEcCCCCcCCCcEEEccCc-hhhheeecccHHHHHHHHHCCCEEEEEECcCHHHHHHHHHHcCCcEEeeC--C-C
Confidence 4789999998753 222222 223334 788899999998885 35667888999998765532 1 3
Q ss_pred CHHHHHHHH
Q 006023 645 SVAEAMEAC 653 (664)
Q Consensus 645 tv~~Av~~~ 653 (664)
+-.++++.+
T Consensus 100 ~k~~~~~~~ 108 (195)
T 3n07_A 100 DKVQAYYDI 108 (195)
T ss_dssp SHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 344555544
No 38
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=28.95 E-value=1.4e+02 Score=25.45 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=42.4
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 654 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~ 654 (664)
.+..+++|+..- |..|.+.+.++.+.. .+..+++... ..+........|..+.+.+..-...+.++++.+.
T Consensus 51 ~~dlii~D~~l~---~~~g~~~~~~l~~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~ 123 (153)
T 3cz5_A 51 TPDIVVMDLTLP---GPGGIEATRHIRQWD--GAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAIL 123 (153)
T ss_dssp CCSEEEECSCCS---SSCHHHHHHHHHHHC--TTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHT
T ss_pred CCCEEEEecCCC---CCCHHHHHHHHHHhC--CCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 468999997642 456888777777653 3455555443 3344555556787776654323334556666554
No 39
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=28.63 E-value=2e+02 Score=23.43 Aligned_cols=74 Identities=20% Similarity=0.189 Sum_probs=39.0
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCcc-cccCHHHHHHHHh
Q 006023 578 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGC-VYLSVAEAMEACL 654 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~~g~~~~i~~~~-if~tv~~Av~~~~ 654 (664)
.++..+++|..- =|..|.+.+.++.+.. .+..+++... +.+........|..+.+.+.. -...+.++++.+-
T Consensus 50 ~~~dlvi~d~~l---~~~~g~~~~~~l~~~~--~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l 124 (130)
T 3eod_A 50 FTPDLMICDIAM---PRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 (130)
T ss_dssp CCCSEEEECCC--------CHHHHHHHHHTT--CCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHH
T ss_pred CCCCEEEEecCC---CCCCHHHHHHHHHhcC--CCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHh
Confidence 457899999763 2566777777766532 3455555433 333334455577776664432 2344566666655
Q ss_pred cc
Q 006023 655 TS 656 (664)
Q Consensus 655 ~~ 656 (664)
++
T Consensus 125 ~~ 126 (130)
T 3eod_A 125 YP 126 (130)
T ss_dssp C-
T ss_pred ch
Confidence 44
No 40
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=27.84 E-value=76 Score=26.64 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHH---HHHCCCccccCC
Q 006023 578 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQVIHK---LKSAKLLDRIGK 639 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~~~v~~~---L~~~g~~~~i~~ 639 (664)
.++..+++|..- =|..|.+.+.++.+.....+..+++.....+.... ....|..+.+.+
T Consensus 49 ~~~dlvi~d~~l---~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~k 110 (140)
T 3grc_A 49 RPYAAMTVDLNL---PDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEK 110 (140)
T ss_dssp SCCSEEEECSCC---SSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECS
T ss_pred CCCCEEEEeCCC---CCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeC
Confidence 346899999763 25668888887776545568888888776654433 234566555543
No 41
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=27.30 E-value=1.5e+02 Score=24.60 Aligned_cols=72 Identities=10% Similarity=0.155 Sum_probs=41.5
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 653 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~--~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~ 653 (664)
.+..+++|...- |..|.+.+.++.+.....+..+++.... .+........|..+.+.+..-...+.++++.+
T Consensus 54 ~~dlii~d~~l~---~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 127 (143)
T 3cnb_A 54 KPDVVMLDLMMV---GMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQL 127 (143)
T ss_dssp CCSEEEEETTCT---TSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHH
T ss_pred CCCEEEEecccC---CCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHH
Confidence 468999997642 4567777766665333456777766443 33344555678776664432233344555544
No 42
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=26.97 E-value=83 Score=27.54 Aligned_cols=54 Identities=17% Similarity=0.209 Sum_probs=39.8
Q ss_pred HHHHHHHhCCCEEEEEc-CCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhccCcc
Q 006023 603 ELHKKLASNGIELVMAS-PRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKFA 659 (664)
Q Consensus 603 ~l~~~l~~~gi~l~la~-~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~~~~~ 659 (664)
.+.+.+.++|+++++++ ..+...+.|+..|+.-..+ .-.+++||++.+.+.+..
T Consensus 67 ~~a~~L~~~gv~vVI~g~IG~~a~~~L~~~GI~v~~~---~~g~i~eal~~~~~G~L~ 121 (136)
T 1o13_A 67 AVPNFVKEKGAELVIVRGIGRRAIAAFEAMGVKVIKG---ASGTVEEVVNQYLSGQLK 121 (136)
T ss_dssp CHHHHHHHTTCSEEECSCCCHHHHHHHHHTTCEEECS---CCSBHHHHHHHHHTTC--
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCEEEec---CCCCHHHHHHHHHhCCCC
Confidence 45566777899999995 4889999999999943322 236899999988765543
No 43
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=26.83 E-value=84 Score=26.88 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=44.6
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 006023 578 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 654 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~--~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~ 654 (664)
..+..+++|+.. -|..|.+.+.++.+. ..+..+++.... .+......+.|..+.+.+..-...+.++++.+.
T Consensus 65 ~~~dlii~D~~l---~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 65 ESVDIAILDVEM---PVKTGLEVLEWIRSE--KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVL 138 (150)
T ss_dssp SCCSEEEECSSC---SSSCHHHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCC---CCCcHHHHHHHHHHh--CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHH
Confidence 457899999763 256788888777664 245666666543 345555666888777654333344555565554
No 44
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=26.60 E-value=92 Score=27.26 Aligned_cols=52 Identities=21% Similarity=0.142 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCEEEEEc-CCHHHHHHHHHCCCccccCCcccccCHHHHHHHHhccCc
Q 006023 603 ELHKKLASNGIELVMAS-PRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKF 658 (664)
Q Consensus 603 ~l~~~l~~~gi~l~la~-~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~~~~ 658 (664)
.+.+.+.+.|+++++|+ ..+...+.|+. |+.-..+ --.+++||++.+.+.+.
T Consensus 70 ~~~~~L~~~gv~~VI~g~iG~~a~~~L~~-GI~v~~~---~~~~veeal~~~~~G~L 122 (136)
T 2re2_A 70 FMLKSALDHGANALVLSEIGSPGFNFIKN-KMDVYIV---PEMPVADALKLILEGKV 122 (136)
T ss_dssp HHHHHHHHTTCSEEEESCCBHHHHHHHTT-TSEEEEC---CSCBHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHC-CCEEEEc---CCCCHHHHHHHHHhCCC
Confidence 45666667899999996 57888899999 9842222 12689999998876543
No 45
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=26.58 E-value=1.1e+02 Score=26.24 Aligned_cols=71 Identities=10% Similarity=0.087 Sum_probs=43.1
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 654 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~--~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~ 654 (664)
++..+++|+.. =|..|.+.+.++.+. ..+..+++.... .+........|..+.+.+..-...+.++++.+.
T Consensus 61 ~~dlii~d~~l---~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 133 (152)
T 3eul_A 61 LPDVALLDYRM---PGMDGAQVAAAVRSY--ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCA 133 (152)
T ss_dssp CCSEEEEETTC---SSSCHHHHHHHHHHT--TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC---CCCCHHHHHHHHHhc--CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence 46899999764 356688877777654 245666666543 344445556787776654333344555665543
No 46
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=26.29 E-value=2.6e+02 Score=22.78 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=45.0
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEE-cC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHhcc
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMA-SP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTS 656 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la-~~-~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~~ 656 (664)
.+..+++|+.. . |..|.+.+.++.+.. .....+++. +. ..+........|..+.+.+..-...+.++++.+..+
T Consensus 48 ~~dlvllD~~l-~--~~~g~~~~~~l~~~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 48 RPDILLLDIIM-P--HLDGLAVLERIRAGF-EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp CCSEEEEESCC-S--SSCHHHHHHHHHHHC-SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred CCCEEEEecCC-C--CCCHHHHHHHHHhcC-CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 35799999863 2 456877777776621 245555544 33 344444555678777665544455677777766544
Q ss_pred C
Q 006023 657 K 657 (664)
Q Consensus 657 ~ 657 (664)
.
T Consensus 124 ~ 124 (130)
T 1dz3_A 124 T 124 (130)
T ss_dssp C
T ss_pred C
Confidence 3
No 47
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=25.78 E-value=2.1e+02 Score=23.61 Aligned_cols=74 Identities=15% Similarity=0.181 Sum_probs=40.4
Q ss_pred CccEEEEEccCCC--ccchhHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 006023 579 TIQAVIIDMSNSM--NIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 654 (664)
Q Consensus 579 ~~~~vILD~s~V~--~IDssgl~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~ 654 (664)
.+..+++|+..-. .-|..|.+.+.++.+. ..+..+++... ..+......+.|..+.+.+..-...+.++++.+.
T Consensus 47 ~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 47 NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQ--YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAA 124 (140)
T ss_dssp CEEEEEEETTTTC-----CCHHHHHHHHHHH--CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCcCCCCCCCccHHHHHHHHHhh--CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHH
Confidence 4689999986421 1155688877777765 23555555543 3334445556777666543222333445555443
No 48
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Probab=25.69 E-value=55 Score=30.54 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=39.7
Q ss_pred CccEEEEEccCCCccch---------hHHHHHHHHHHHHHhCCCEEEEEcCCH-----------------HHHHHHHHCC
Q 006023 579 TIQAVIIDMSNSMNIDT---------SGILVLEELHKKLASNGIELVMASPRW-----------------QVIHKLKSAK 632 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDs---------sgl~~L~~l~~~l~~~gi~l~la~~~~-----------------~v~~~L~~~g 632 (664)
..+.+++|+.++-.-+. .-..-..++.++++++|+++.++.-+. .+.+.|+..|
T Consensus 24 ~~k~v~~D~DGTL~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 103 (211)
T 2gmw_A 24 SVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRD 103 (211)
T ss_dssp CBCEEEECSBTTTBCCCSSCCSGGGCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEcCCCCeECCCCcccCcccCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcC
Confidence 36799999988765543 223346778888999999998775443 4667788887
Q ss_pred C
Q 006023 633 L 633 (664)
Q Consensus 633 ~ 633 (664)
+
T Consensus 104 l 104 (211)
T 2gmw_A 104 V 104 (211)
T ss_dssp C
T ss_pred C
Confidence 6
No 49
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=25.68 E-value=61 Score=27.27 Aligned_cols=55 Identities=24% Similarity=0.231 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHhccCccc
Q 006023 603 ELHKKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKFAA 660 (664)
Q Consensus 603 ~l~~~l~~~gi~l~la~~-~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~~~~~~ 660 (664)
.+.+.+.++|+++++++- .+...+.|+..|+.-..+ .-.+++||++.+.+.+...
T Consensus 53 ~~~~~l~~~gv~~vi~~~iG~~a~~~L~~~GI~v~~~---~~~~i~eal~~~~~g~L~~ 108 (116)
T 1rdu_A 53 KVVQSLVSKGVEYLIASNVGRNAFETLKAAGVKVYRF---EGGTVQEAIDAFSEGRLEE 108 (116)
T ss_dssp SHHHHHHTTTCCEEECSSCCSSCHHHHHTTTCEEECC---CSCBHHHHHHHHHTTCSCB
T ss_pred HHHHHHHHcCCCEEEECCCCHhHHHHHHHCCCEEEEC---CCCCHHHHHHHHHhCCCCc
Confidence 355667789999999954 777899999999842222 2358999999988765443
No 50
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.59 E-value=1.2e+02 Score=25.49 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=40.4
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 006023 578 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 653 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~--~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~ 653 (664)
..+..+++|+ .. |..|.+.+.++.+.. .+..+++.... .+........|..+.+.+..-...+.++++.+
T Consensus 47 ~~~dlvi~d~--~~--~~~g~~~~~~l~~~~--~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~ 118 (142)
T 2qxy_A 47 EKIDLVFVDV--FE--GEESLNLIRRIREEF--PDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKI 118 (142)
T ss_dssp SCCSEEEEEC--TT--THHHHHHHHHHHHHC--TTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHH
T ss_pred cCCCEEEEeC--CC--CCcHHHHHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHH
Confidence 3578999998 33 566777777776542 35777666443 34444555567766654322223344455443
No 51
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.40 E-value=1.4e+02 Score=25.46 Aligned_cols=57 Identities=16% Similarity=0.224 Sum_probs=35.9
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCCH--HHHHHHHHCC-CccccCC
Q 006023 578 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRW--QVIHKLKSAK-LLDRIGK 639 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~~--~v~~~L~~~g-~~~~i~~ 639 (664)
.++..+++|+.-- |..|.+.+.++.+. ..+..+++..... +........| ..+.+.+
T Consensus 57 ~~~dlvi~D~~l~---~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~K 116 (153)
T 3hv2_A 57 REVDLVISAAHLP---QMDGPTLLARIHQQ--YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSK 116 (153)
T ss_dssp SCCSEEEEESCCS---SSCHHHHHHHHHHH--CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECS
T ss_pred CCCCEEEEeCCCC---cCcHHHHHHHHHhH--CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeC
Confidence 3578999998642 56788888888763 3467777665433 3333444456 6666544
No 52
>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}
Probab=24.54 E-value=1.3e+02 Score=28.19 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=45.7
Q ss_pred CccEEEEEccCCCccchh--------------HHHHHHHHHHHHHhCCCEEEEEc--CCHHHHHHHHHCCCccccCCccc
Q 006023 579 TIQAVIIDMSNSMNIDTS--------------GILVLEELHKKLASNGIELVMAS--PRWQVIHKLKSAKLLDRIGKGCV 642 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDss--------------gl~~L~~l~~~l~~~gi~l~la~--~~~~v~~~L~~~g~~~~i~~~~i 642 (664)
.++.||+|+.++- +|+. -...+ +.++++++|+++.++. ..+.+.+.++..|+.+.+.. +
T Consensus 48 ~ik~viFDlDGTL-~Ds~~~~~~~~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~~~f~~--~ 122 (211)
T 3ij5_A 48 NIRLLICDVDGVM-SDGLIYMGNQGEELKAFNVRDGY--GIRCLITSDIDVAIITGRRAKLLEDRANTLGITHLYQG--Q 122 (211)
T ss_dssp TCSEEEECCTTTT-SSSEEEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCCEEECS--C
T ss_pred CCCEEEEeCCCCE-ECCHHHHhhhhHHHHHhccchHH--HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCchhhcc--c
Confidence 4789999998862 2221 00111 6788999999999985 45578888999898665532 2
Q ss_pred ccCHHHHHHHHh
Q 006023 643 YLSVAEAMEACL 654 (664)
Q Consensus 643 f~tv~~Av~~~~ 654 (664)
.+-.++++.+.
T Consensus 123 -k~K~~~l~~~~ 133 (211)
T 3ij5_A 123 -SDKLVAYHELL 133 (211)
T ss_dssp -SSHHHHHHHHH
T ss_pred -CChHHHHHHHH
Confidence 34455555543
No 53
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=24.38 E-value=1.3e+02 Score=25.82 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=36.2
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCC
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGK 639 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~~g~~~~i~~ 639 (664)
.+..+++|+.. -|..|++.++++.+.. .+..+++... ..+........|..+.+.+
T Consensus 83 ~~dliilD~~l---~~~~g~~~~~~lr~~~--~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~K 140 (157)
T 3hzh_A 83 NIDIVTLXITM---PKMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIVK 140 (157)
T ss_dssp GCCEEEECSSC---SSSCHHHHHHHHHHHC--TTCCEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred CCCEEEEeccC---CCccHHHHHHHHHhhC--CCCcEEEEeccCcHHHHHHHHHcCCCEEEeC
Confidence 46799999763 2567888888877654 3455555443 3555556667887766643
No 54
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=24.04 E-value=1.8e+02 Score=23.70 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=42.4
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 006023 578 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 654 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~-~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~ 654 (664)
.++..+++|..- =|..|.+.++++.+........+++... .++........|..+.+.+..-...+.++++.+.
T Consensus 49 ~~~dlii~d~~l---~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (132)
T 3lte_A 49 FEPAIMTLDLSM---PKLDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLV 123 (132)
T ss_dssp TCCSEEEEESCB---TTBCHHHHHHHHHTTTCSSCCEEEEECCSCSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEecCC---CCCCHHHHHHHHHhcCccCCCeEEEEeCCChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHc
Confidence 346799999763 2566877777766543334566666654 3334444455677676654333344455555443
No 55
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*
Probab=23.85 E-value=38 Score=35.06 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=50.7
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHH-HCCCccccCCcccccCHHHH
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR-----WQVIHKLK-SAKLLDRIGKGCVYLSVAEA 649 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~-~~g~~~~i~~~~if~tv~~A 649 (664)
..+.+++|+.+|-+-+...+.--.+..+.++++|++++++.-+ .+..+.|+ ..|+. +.+++++.+-..+
T Consensus 12 ~~~~~l~D~DGvl~~g~~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~--~~~~~i~ts~~~~ 86 (352)
T 3kc2_A 12 KKIAFAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVD--VSPLQIIQSHTPY 86 (352)
T ss_dssp CCEEEEECCBTTTEETTEECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSC--CCGGGEECTTGGG
T ss_pred cCCEEEEECCCeeEcCCeeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCC--CChhhEeehHHHH
Confidence 4689999999998877766666777888889999999887533 46677787 57873 3456777764433
No 56
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=23.51 E-value=65 Score=26.96 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=42.8
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 654 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~--~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~ 654 (664)
++..+++|+.. -|..|.+.+..+.+.. .+..+++.... .+........|..+.+.+..-...+.++++.+.
T Consensus 51 ~~dlvi~d~~l---~~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 51 APDVIITDIRM---PKLGGLEMLDRIKAGG--AKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp CCSEEEECSSC---SSSCHHHHHHHHHHTT--CCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCC---CCCCHHHHHHHHHhcC--CCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 46799999763 2567887777776543 45666666443 334445556777776654433344555555443
No 57
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}
Probab=23.05 E-value=67 Score=30.95 Aligned_cols=71 Identities=18% Similarity=0.105 Sum_probs=42.4
Q ss_pred cEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCC-----HHHHHHHHHCCCccccCCcccccCHHHHHHHH
Q 006023 581 QAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR-----WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEAC 653 (664)
Q Consensus 581 ~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~-----~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~ 653 (664)
+.+++|+.++-.-+..-+..-.+..++++++|+++.++..+ .++.+.|+..|+.. ..+.++.+...+.+..
T Consensus 2 k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~--~~~~i~~~~~~~~~~l 77 (263)
T 1zjj_A 2 VAIIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDV--SSSIIITSGLATRLYM 77 (263)
T ss_dssp EEEEEECBTTTEETTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCC--CGGGEEEHHHHHHHHH
T ss_pred eEEEEeCcCceEeCCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCC--ChhhEEecHHHHHHHH
Confidence 57899998866533222223446667778889999888654 34666777677742 1234555544444444
No 58
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=22.82 E-value=82 Score=26.61 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=36.9
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCC
Q 006023 578 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGK 639 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~~g~~~~i~~ 639 (664)
.++..+++|+.- =|..|++.+..+.+.-...+..+++... .++........|..+.+.+
T Consensus 50 ~~~dlii~D~~l---~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~K 110 (144)
T 3kht_A 50 AKYDLIILDIGL---PIANGFEVMSAVRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDK 110 (144)
T ss_dssp CCCSEEEECTTC---GGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEEC
T ss_pred CCCCEEEEeCCC---CCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 457899999763 2567877777776533334566666543 3555555566787776643
No 59
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=22.49 E-value=1.7e+02 Score=24.43 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=41.4
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHH
Q 006023 578 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEA 652 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~--~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~ 652 (664)
..+..+++|+.- -|..|++.+.++.+. ..+..+++.... .+........|..+.+.+..-...+.++++.
T Consensus 48 ~~~dlvi~d~~l---~~~~g~~~~~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~ 119 (143)
T 3jte_A 48 NSIDVVITDMKM---PKLSGMDILREIKKI--TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINN 119 (143)
T ss_dssp TTCCEEEEESCC---SSSCHHHHHHHHHHH--CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHH
T ss_pred CCCCEEEEeCCC---CCCcHHHHHHHHHHh--CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHH
Confidence 357899999764 257788888887764 345676666543 3334455567776665443222333444443
No 60
>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Probab=22.32 E-value=71 Score=31.10 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=39.4
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcC-----CHHHHHHHHHCCCc
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP-----RWQVIHKLKSAKLL 634 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~-----~~~v~~~L~~~g~~ 634 (664)
..+.+++|+.++-.-+..-..--.+..++++++|++++++.- ...+.+.++..|+.
T Consensus 13 ~~k~i~~D~DGtL~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~ 73 (284)
T 2hx1_A 13 KYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLF 73 (284)
T ss_dssp GCSEEEECSBTTTEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCT
T ss_pred cCCEEEEcCcCCcCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcC
Confidence 468999999987654332222334566778889999998862 35677888888874
No 61
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=22.09 E-value=3.2e+02 Score=28.38 Aligned_cols=83 Identities=11% Similarity=0.139 Sum_probs=52.2
Q ss_pred ccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEE-ccCCCccchhHHHHHHHHHHHHHhCCCEE--EEEcCCH-HHHHH
Q 006023 552 ANANFIRERIMRWVTEEQDELEETTKRTIQAVIID-MSNSMNIDTSGILVLEELHKKLASNGIEL--VMASPRW-QVIHK 627 (664)
Q Consensus 552 ~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD-~s~V~~IDssgl~~L~~l~~~l~~~gi~l--~la~~~~-~v~~~ 627 (664)
++.+.+++.++-.+++ ++++.+++. +.+++..|.-+ +.+.+..+++ +.++.+ .+.+.+. +-++.
T Consensus 293 a~~~~~~~~~~~il~d----------~~v~~ilvni~ggi~~~~~vA-~gii~a~~~~-~~~~pivvrl~G~n~~~g~~~ 360 (388)
T 2nu8_B 293 ATKERVTEAFKIILSD----------DKVKAVLVNIFGGIVRCDLIA-DGIIGAVAEV-GVNVPVVVRLEGNNAELGAKK 360 (388)
T ss_dssp CCHHHHHHHHHHHHTS----------TTCCEEEEEEESCSSCHHHHH-HHHHHHHHHH-TCCSCEEEEEESTTHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC----------CCCCEEEEEecCCcCCchHHH-HHHHHHHHhc-CCCCeEEEEeCCCCHHHHHHH
Confidence 4566666666544432 456766665 47788778776 5555555655 245554 4566665 44567
Q ss_pred HHHCCCccccCCcccc--cCHHHHHHHH
Q 006023 628 LKSAKLLDRIGKGCVY--LSVAEAMEAC 653 (664)
Q Consensus 628 L~~~g~~~~i~~~~if--~tv~~Av~~~ 653 (664)
|+.+|+ .+| +|.++|++.+
T Consensus 361 l~~~g~-------~~~~~~~~~~aa~~~ 381 (388)
T 2nu8_B 361 LADSGL-------NIIAAKGLTDAAQQV 381 (388)
T ss_dssp HHTTCS-------SEEECSSHHHHHHHH
T ss_pred HHHCCC-------ceecCCCHHHHHHHH
Confidence 777774 355 9999999865
No 62
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=21.57 E-value=47 Score=20.56 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=14.0
Q ss_pred hhhhhhhhhHHHhhccCCc
Q 006023 128 GLYTSVIPPLIYALMGSSR 146 (664)
Q Consensus 128 GLyss~v~~liy~l~Gss~ 146 (664)
.+.++.+.+++|++|++-+
T Consensus 6 ~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 5678888888999988744
No 63
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=21.51 E-value=3.9 Score=35.89 Aligned_cols=107 Identities=9% Similarity=0.038 Sum_probs=61.6
Q ss_pred CCCEEEEEEcCcceeeccHHHHHHHHHHHHHhhhhhhhhhcCCCccEEEEEccCCCccchhHHHHHHHHHHHHH--hCCC
Q 006023 536 TPGILTIRINSALFCFANANFIRERIMRWVTEEQDELEETTKRTIQAVIIDMSNSMNIDTSGILVLEELHKKLA--SNGI 613 (664)
Q Consensus 536 ~~~i~Ivrl~g~~L~F~na~~~~~~i~~~i~~~~~~~~~~~~~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~--~~gi 613 (664)
.+++..++++|. +.=...+.+...+.+.+++. ..++++ +.+|++.....+..++ ..++.-.++ ++=-
T Consensus 18 ~~~vl~v~~~G~-lt~eD~~~l~~~i~~~l~~~-------~~~~i~-lL~~~~~f~G~~~~A~--~~d~k~~~~h~~~~~ 86 (127)
T 2ook_A 18 SVFFVTLKAIGT-LTHEDYLVITPMLEGALSQV-------DQPKVS-LFLDATELDGWDLRAA--WDDLKLGLKHKSEFE 86 (127)
T ss_dssp TEEEEEEEEEEE-ECHHHHHHHHHHHHHHHTTC-------CCSSCC-EEEEEEEEEEECTTCG--GGGCCCCCTTSCCEE
T ss_pred CCCEEEEEEeee-ECHHHHHHHHHHHHHHHhhc-------cCCCEE-EEEEccCCCCCCHHHH--HHHHHhhhhhHhcCC
Confidence 346899999999 77666666666665555430 013444 8888887777774432 112211111 1225
Q ss_pred EEEEEcCCHHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 006023 614 ELVMASPRWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 654 (664)
Q Consensus 614 ~l~la~~~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~ 654 (664)
++.+++-++=+....+..+.+-. ++-+.|++-++|.+|++
T Consensus 87 RiAvV~d~~W~~~~~~~~~~~~~-~evk~F~~~~~A~~Wl~ 126 (127)
T 2ook_A 87 RVAILGNKDWQEWAAKIGSWFIA-GEIKYFEDEDDALKWLR 126 (127)
T ss_dssp EEEEECCSSCCTTTTTGGGGCCE-EEEEEESCHHHHHHHHH
T ss_pred EEEEEcChHHHHHHHHHHhhCcC-CceEccCCHHHHHHHHh
Confidence 67777665433333333333211 24489999999999986
No 64
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=21.39 E-value=3.5e+02 Score=22.41 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=44.1
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCC--HHHHHHHHHCCCccccCCcccccCHHHHHHHHh
Q 006023 578 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPR--WQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACL 654 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~--~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~ 654 (664)
..+..+++|+.. =|..|++.+.++.+.. .+..+++.... .+......+.|..+.+.+..-...+.++++.+.
T Consensus 66 ~~~dlvi~D~~l---~~~~g~~~~~~l~~~~--~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~ 139 (146)
T 4dad_A 66 DAFDILMIDGAA---LDTAELAAIEKLSRLH--PGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAA 139 (146)
T ss_dssp TTCSEEEEECTT---CCHHHHHHHHHHHHHC--TTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCC---CCccHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHH
Confidence 457899999763 3677888888876643 45666666543 344444556787776654333344555555544
No 65
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=20.89 E-value=83 Score=26.06 Aligned_cols=72 Identities=24% Similarity=0.197 Sum_probs=43.2
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHHHHHCCCccccCCcccccCHHHHHHHHhc
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASPRWQ--VIHKLKSAKLLDRIGKGCVYLSVAEAMEACLT 655 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~~~~--v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~ 655 (664)
++..+++|+.. =|..|.+.+.++.+. ..+..+++.....+ ......+.|..+.+.+..-...+.++++.+.+
T Consensus 46 ~~dlii~d~~l---~~~~g~~~~~~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 119 (134)
T 3f6c_A 46 KPDIVIIDVDI---PGVNGIQVLETLRKR--QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 119 (134)
T ss_dssp CCSEEEEETTC---SSSCHHHHHHHHHHT--TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHT
T ss_pred CCCEEEEecCC---CCCChHHHHHHHHhc--CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 46799999764 346688877777664 23566666654433 44455567877766544333445566665543
No 66
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=20.75 E-value=1.7e+02 Score=23.94 Aligned_cols=53 Identities=8% Similarity=0.150 Sum_probs=39.5
Q ss_pred HHHHhCCCEEEEEcC-CHHHHHHHHHCCCccccCCcccccCHHHHHHHHhccCccccc
Q 006023 606 KKLASNGIELVMASP-RWQVIHKLKSAKLLDRIGKGCVYLSVAEAMEACLTSKFAALS 662 (664)
Q Consensus 606 ~~l~~~gi~l~la~~-~~~v~~~L~~~g~~~~i~~~~if~tv~~Av~~~~~~~~~~~~ 662 (664)
+.+.++|+++++|+- .+...+.|+.. + +.+.. .-.+++||++.+.+.+.....
T Consensus 50 ~~l~~~gv~~vi~~~iG~~a~~~L~~~-I-~v~~~--~~~~v~eal~~~~~g~L~~~~ 103 (105)
T 2qtd_A 50 KSIVKENVNAIICKNISEENYKKFSKK-I-EIYHA--EGDDVDKNISLFIEGELSKIS 103 (105)
T ss_dssp HHHHHTCCSEEEESCCCHHHHHHHHTT-C-EEEEC--CSSCHHHHHHHHHTTCSCBCS
T ss_pred HHHHHCCCCEEEECCCCHHHHHHHHhc-c-EEEEC--CCCCHHHHHHHHHcCCCCCCC
Confidence 556678999999964 88899999988 5 54421 346899999998877665543
No 67
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=20.25 E-value=1.7e+02 Score=25.12 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=35.6
Q ss_pred CCccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCC
Q 006023 578 RTIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGK 639 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~~g~~~~i~~ 639 (664)
.++..+++|+.-- |..|++.+..+.+.-...+..+++... .++........|..+.+.+
T Consensus 50 ~~~dlii~D~~l~---~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~K 110 (154)
T 3gt7_A 50 TRPDLIISDVLMP---EMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITK 110 (154)
T ss_dssp CCCSEEEEESCCS---SSCHHHHHHHHHHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEES
T ss_pred CCCCEEEEeCCCC---CCCHHHHHHHHHhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeC
Confidence 4578999997632 456877777766543234666665543 4444445555677666643
No 68
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=20.24 E-value=2.5e+02 Score=22.29 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=33.7
Q ss_pred CccEEEEEccCCCccchhHHHHHHHHHHHHHhCCCEEEEEcC--CHHHHHHHHHCCCccccCC
Q 006023 579 TIQAVIIDMSNSMNIDTSGILVLEELHKKLASNGIELVMASP--RWQVIHKLKSAKLLDRIGK 639 (664)
Q Consensus 579 ~~~~vILD~s~V~~IDssgl~~L~~l~~~l~~~gi~l~la~~--~~~v~~~L~~~g~~~~i~~ 639 (664)
.+..+++|+.- . |..|.+.++++.+.. .+..+++... ..+......+.|..+.+.+
T Consensus 47 ~~dlil~D~~l-~--~~~g~~~~~~l~~~~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K 104 (120)
T 1tmy_A 47 KPDIVTMDITM-P--EMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAIKAGAKDFIVK 104 (120)
T ss_dssp CCSEEEEECSC-G--GGCHHHHHHHHHHHC--TTCCEEEEECTTCHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEeCCC-C--CCcHHHHHHHHHhhC--CCCeEEEEeCCCCHHHHHHHHHhCcceeEeC
Confidence 35799999863 2 456877777776643 3455555543 3344444556777766643
No 69
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=20.12 E-value=1.2e+02 Score=32.79 Aligned_cols=42 Identities=7% Similarity=-0.039 Sum_probs=36.7
Q ss_pred CCccEEEEEccCCCccchh-----HHHHHHHHHHHHHhCCCEEEEEcCC
Q 006023 578 RTIQAVIIDMSNSMNIDTS-----GILVLEELHKKLASNGIELVMASPR 621 (664)
Q Consensus 578 ~~~~~vILD~s~V~~IDss-----gl~~L~~l~~~l~~~gi~l~la~~~ 621 (664)
.+++.+|+| +.+.+|.. ....+.++.+.++++|+.+++++-.
T Consensus 370 ~~p~llilD--p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~ 416 (525)
T 1tf7_A 370 FKPARIAID--SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTS 416 (525)
T ss_dssp TCCSEEEEE--CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred hCCCEEEEc--ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECc
Confidence 357899999 89999999 8899999999999999999888643
Done!