BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006024
(664 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 258 bits (658), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 187/630 (29%), Positives = 328/630 (52%), Gaps = 74/630 (11%)
Query: 38 KSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKE 97
K + WKVLI+D+L+++++S CKM +I EG++LVED+ RRR+PLP +EA+Y I PT+E
Sbjct: 20 KKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTEE 79
Query: 98 NVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVD 156
+V ++D +P Y+ A +FF+ EL + K ST I L+E+N+ + +
Sbjct: 80 SVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKTLKEINIAFLPYE 138
Query: 157 SQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAM 216
SQ F D +++ + +Q A +IAT+ A+L E+P VRYR+ +A
Sbjct: 139 SQIFSLDSPDTF-QVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENA- 196
Query: 217 TITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSETCELLILDRSVDQIAPIIHEWT 273
+F LV KL A Y+ T+ P + +LLILDR D I+P++HE T
Sbjct: 197 ---SFAQLVQQKLDA--------YRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHELT 245
Query: 274 YDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEK 333
+ A+ +DLL +E + Y + V + + PE KEVLL+E D +WVE+RH HIA S+ + +K
Sbjct: 246 FQAMAYDLLPIENDVYKY-VNTGGNEVPE-KEVLLDEKDDLWVEMRHQHIAVVSQNVTKK 303
Query: 334 MTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIR 393
+ F + + + + +DL ++++ +PQY +++ K S H+ +A + +
Sbjct: 304 LKQFADEKRMGTAADKA------GIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQ 357
Query: 394 ETGLRELGQLEQDLVFG-DAG-------FKDVIKFLTAKEDITRENKLRLLMIVASIYPE 445
+ + +L ++EQDL G DA ++++ L ++ I+ +K+R++++ I+
Sbjct: 358 QH-VDKLCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQK-ISAYDKIRIILLYI-IHKG 414
Query: 446 KFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKD 505
E L++ A + A++ +N+M+ LG + G + H R R+
Sbjct: 415 GISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDG---GRRKIPQPYHTHNRKERQ- 470
Query: 506 RSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAH 565
+ T+Q+SR+ P +++++E +++L YP +N P P+
Sbjct: 471 ---ADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPR-------------PSCQ 514
Query: 566 SMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKL- 624
S R W + D G +S K G R+ +F+VGG + SE+R +++
Sbjct: 515 QPVSVRYGHWHK----DKGQAS-----------YKSGPRLIIFVVGGISYSEMRSAYEVT 559
Query: 625 -TAKLNREVVLGSSSLDDPPQFITKLKMLT 653
TAK N EV+LGS+ + P + L+ ++
Sbjct: 560 QTAKNNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 252 bits (643), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 183/649 (28%), Positives = 337/649 (51%), Gaps = 81/649 (12%)
Query: 17 NFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDL 76
K + E++++++++ K K WKVL++D+L+++++S CKM DI EG+++VED+
Sbjct: 17 GLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDI 73
Query: 77 YRRRQPLPSMEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKD 135
+RR+PLPS+EA+Y I P++++V + +SD + Y+ A VFF+ L + K
Sbjct: 74 NKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK- 132
Query: 136 STVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATV 195
S I L E+N+ + +SQ + D + + + ++ K + L +A +IAT+
Sbjct: 133 SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMK-NPILERLAEQIATL 191
Query: 196 FASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSET 252
A+L+E+P VRYR +A+ LA + + L YK T+ P
Sbjct: 192 CATLKEYPAVRYRGEYKDNAL------------LAQLIQDKLDAYKADDPTMGEGPDKAR 239
Query: 253 CELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHD 312
+LLILDR D +P++HE T+ A+ +DLL +E + Y +E + G KEVLL+E D
Sbjct: 240 SQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDD 297
Query: 313 PIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYS 372
+W+ LRH HIA+ S+ + + F S + G + RDL ++++ +PQY
Sbjct: 298 DLWIALRHKHIAEVSQEVTRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQ 350
Query: 373 EQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFG-DA---GFKDVIKFLTA---KE 425
+++ K S H+ +A + + T + +L ++EQDL G DA KD ++ +
Sbjct: 351 KELSKYSTHLHLAEDCMKHYQGT-VDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDA 409
Query: 426 DITRENKLRLLMIVASIYPEKFEGEKGLN-LMKLAKLTADDMTAVNNMRLLGGALESKKS 484
+++ +K+R++++ I+ + E+ LN L++ A++ +D + NM LG + + +
Sbjct: 410 NVSTYDKIRIILLY--IFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST 467
Query: 485 TIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMND 544
+ ++ + RK+R E+T+QLSR+ P+I++++E +++L YP ++
Sbjct: 468 ----------LRRRSKPERKERI-SEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYIST 516
Query: 545 PSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQR 604
S TT S R W + ++ + S G R
Sbjct: 517 RSSASFSTTAV-------------SARYGHWHKNKAPGEYRS---------------GPR 548
Query: 605 IFVFIVGGTTRSELRVCHKLT-AKLNREVVLGSSSLDDPPQFITKLKML 652
+ +FI+GG + +E+R +++T A EV++GS+ + P + + LK L
Sbjct: 549 LIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKL 597
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 251 bits (642), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 183/649 (28%), Positives = 337/649 (51%), Gaps = 81/649 (12%)
Query: 17 NFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDL 76
K + E++++++++ K K WKVL++D+L+++++S CKM DI EG+++VED+
Sbjct: 5 GLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDI 61
Query: 77 YRRRQPLPSMEAIYFIQPTKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKD 135
+RR+PLPS+EA+Y I P++++V + +SD + Y+ A VFF+ L + K
Sbjct: 62 NKRREPLPSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK- 120
Query: 136 STVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATV 195
S I L E+N+ + +SQ + D + + + ++ K + L +A +IAT+
Sbjct: 121 SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMK-NPILERLAEQIATL 179
Query: 196 FASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQ---TIQNFPMSET 252
A+L+E+P VRYR +A+ LA + + L YK T+ P
Sbjct: 180 CATLKEYPAVRYRGEYKDNAL------------LAQLIQDKLDAYKADDPTMGEGPDKAR 227
Query: 253 CELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHD 312
+LLILDR D +P++HE T+ A+ +DLL +E + Y +E + G KEVLL+E D
Sbjct: 228 SQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYE--TSGIGEARVKEVLLDEDD 285
Query: 313 PIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYS 372
+W+ LRH HIA+ S+ + + F S + G + RDL ++++ +PQY
Sbjct: 286 DLWIALRHKHIAEVSQEVTRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQ 338
Query: 373 EQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFG-DA---GFKDVIKFLTA---KE 425
+++ K S H+ +A + + T + +L ++EQDL G DA KD ++ +
Sbjct: 339 KELSKYSTHLHLAEDCMKHYQGT-VDKLCRVEQDLAMGTDAEGEKIKDPMRAIVPILLDA 397
Query: 426 DITRENKLRLLMIVASIYPEKFEGEKGLN-LMKLAKLTADDMTAVNNMRLLGGALESKKS 484
+++ +K+R++++ I+ + E+ LN L++ A++ +D + NM LG + + +
Sbjct: 398 NVSTYDKIRIILLY--IFLKNGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDST 455
Query: 485 TIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMND 544
+ ++ + RK+R E+T+QLSR+ P+I++++E +++L YP ++
Sbjct: 456 ----------LRRRSKPERKERI-SEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYIST 504
Query: 545 PSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQR 604
S TT S R W + ++ + S G R
Sbjct: 505 RSSASFSTTAV-------------SARYGHWHKNKAPGEYRS---------------GPR 536
Query: 605 IFVFIVGGTTRSELRVCHKLT-AKLNREVVLGSSSLDDPPQFITKLKML 652
+ +FI+GG + +E+R +++T A EV++GS+ + P + + LK L
Sbjct: 537 LIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQKLLDTLKKL 585
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 240 bits (613), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 184/626 (29%), Positives = 310/626 (49%), Gaps = 66/626 (10%)
Query: 38 KSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKE 97
K + WKVLI+D+L+ + +S CK +I EG++LVED+ RRR+PLP +EA+Y I PT+E
Sbjct: 20 KKNAEWKVLIVDQLSXRXVSACCKXHEIXSEGITLVEDINRRREPLPLLEAVYLITPTEE 79
Query: 98 NVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVD 156
+V +D +P Y+ A +FF+ EL + K ST I L+E+N+ + +
Sbjct: 80 SVKCLXADFQNPDNPQYRGAHIFFTEACPEELFKELCK-STTARFIKTLKEINIAFLPYE 138
Query: 157 SQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAM 216
SQ F D +++ + +Q A +IAT+ A+L E+P VRYR+ +A
Sbjct: 139 SQIFSLDSPDTF-QVYYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENA- 196
Query: 217 TITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDA 276
+F LV KL A T P + +LLILDR D I+P++HE T+ A
Sbjct: 197 ---SFAQLVQQKLDA-----YRADDPTXGEGPQKDRSQLLILDRGFDPISPLLHELTFQA 248
Query: 277 ICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTG 336
+DLL +E + Y + V + + PE KEVLL+E D +WVE RH HIA S+ + +K+
Sbjct: 249 XAYDLLPIENDVYKY-VNTGGNEVPE-KEVLLDEKDDLWVEXRHQHIAVVSQNVTKKLKQ 306
Query: 337 FVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETG 396
F + + + + +DL + ++ PQY +++ K S H+ +A + ++
Sbjct: 307 FADEKRXGTAADKA------GIKDLSQXLKKXPQYQKELSKYSTHLHLAEDCXKQYQQH- 359
Query: 397 LRELGQLEQDLVFG-DAGFKDV------IKFLTAKEDITRENKLRLLMIVASIYPEKFEG 449
+ +L ++EQDL G DA + + I + + I+ +K+R++++ I+
Sbjct: 360 VDKLCKVEQDLAXGTDADGEKIRDHXRNIVPILLDQKISAYDKIRIILLYI-IHKGGISE 418
Query: 450 EKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGG 509
E L++ A + A++ +N+ + LG + G + H R R+
Sbjct: 419 ENLAKLVQHAHIPAEEKWIINDXQNLGVPIIQDG---GRRKIPQPYHTHNRKERQ----A 471
Query: 510 EETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRS 569
+ T+Q SR+ P +++ E +++L YP +N P P+ S
Sbjct: 472 DHTYQXSRWTPYXKDIXEAAVEDKLDTRHYPFLNGGGPR-------------PSCQQPVS 518
Query: 570 RRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKL--TAK 627
R W + D G +S K G R+ +F+VGG + SE R +++ TAK
Sbjct: 519 VRYGHWHK----DKGQAS-----------YKSGPRLIIFVVGGISYSEXRSAYEVTQTAK 563
Query: 628 LNREVVLGSSSLDDPPQFITKLKMLT 653
N EV+LGS+ + P + L+ ++
Sbjct: 564 NNWEVILGSTHILTPEGLLRDLRKIS 589
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 222 bits (566), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 176/621 (28%), Positives = 308/621 (49%), Gaps = 81/621 (13%)
Query: 43 WKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAF 102
WK++++D T K++S CKM D+ +EG++++E++Y+ R+P+ M+A+YFI PT ++V F
Sbjct: 32 WKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISPTPKSVDCF 91
Query: 103 LSDMSGKS-PLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFV 161
L D KS YK A+++F+ L IK ++ I +E+N+ + +SQ +
Sbjct: 92 LRDFGSKSEKKYKAAYIYFTDFCPDSLFNKIK--ASCSKSIRRCKEINISFIPQESQVYT 149
Query: 162 TDDERALEELFG-DEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITT 220
D A + D ++ + + + MA +I TV A+L E P VRY+ +K LD +
Sbjct: 150 LDVPDAFYYCYSPDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYK-SKPLD--NASK 206
Query: 221 FRDLVPTKLAAGVWNCLMKYKQTIQNFPMSET-CELLILDRSVDQIAPIIHEWTYDAICH 279
LV KL YK + +T +LLI+DR D ++ ++HE T+ A+ +
Sbjct: 207 LAQLVEKKLED-------YYKIDEKGLIKGKTQSQLLIIDRGFDPVSTVLHELTFQAMAY 259
Query: 280 DLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVS 339
DLL +E + Y + KTDG ++KE +LEE D +WV +RH HIA E + + M S
Sbjct: 260 DLLPIENDTYKY----KTDG--KEKEAVLEEDDDLWVRVRHRHIAVVLEEIPKLMKEISS 313
Query: 340 KNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGK-INRIIRETGLR 398
KA + S L +L++ +P + +QI K +H+ +A +N+ + +
Sbjct: 314 TKKATE--------GKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKF--KLNIE 363
Query: 399 ELGQLEQDLVFG-DAGFKDV----IKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGL 453
+L + EQDL G DA + V + L + +N ++ ++ I+ E+ L
Sbjct: 364 KLCKTEQDLALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIRAVLLYIFGINGTTEENL 423
Query: 454 NLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAARKDRSGGEETW 513
+ + DD + N LG + ++ + RKDRS EET+
Sbjct: 424 DRLIHNVKIEDDSDMIRNWSHLGVPIVPP-------------SQQAKPLRKDRS-AEETF 469
Query: 514 QLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTP 573
QLSR+ P I++++E N L ++P + ++G+ A S R
Sbjct: 470 QLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGS----------GAVSARQ---- 515
Query: 574 TWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLT-AKLNREV 632
+PR++ + D +K G R+ +F++GG T SE+R ++++ A + EV
Sbjct: 516 ---KPRTN-----------YLELD-RKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEV 560
Query: 633 VLGSSSLDDPPQFITKLKMLT 653
++GS+ + P + + +KML
Sbjct: 561 IIGSTHILTPRKLLDDIKMLN 581
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 215 bits (548), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 156/653 (23%), Positives = 317/653 (48%), Gaps = 53/653 (8%)
Query: 26 LLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPS 85
+L LRS G WKVL++D+ ++++S +M++I GV++VED+ ++R+ LP
Sbjct: 11 VLTNSLRSVADG---GDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQ 67
Query: 86 MEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGAL 145
+YFI+PT+EN+ + D + ++P Y+ A +FF SP+ L+ + V + L
Sbjct: 68 FHGVYFIEPTEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAV-KYVKTL 126
Query: 146 REMNLEYFAVDSQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLV 205
+E+N + + + F ++ L + +G SS D + R++T+ ++ P+V
Sbjct: 127 KEINTLFIPKEHRVFTLNEPHGLVQYYGSRSSSYNIDH----LVRRLSTLCTTMNVAPIV 182
Query: 206 RYRAAKS--LDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVD 263
RY + + + M + ++ + ++ G+ N ++ + LILDR+VD
Sbjct: 183 RYSSTSTPGTERMAMQLQKE-IDMSVSQGLINAREGKLKS----------QFLILDRAVD 231
Query: 264 QIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHI 323
+P++HE TY A +DLLN+E + Y + G ++++V+L E D IW+++RH HI
Sbjct: 232 LKSPLVHELTYQAAAYDLLNIENDIYSYST-VDAGGREQQRQVVLGEDDDIWLQMRHLHI 290
Query: 324 ADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVE 383
++ ++ F + Q S+ G L+++++ LPQ+ EQ+ K SLH++
Sbjct: 291 SEVFRKVKSSFDEFCVSARRLQGLRDSQQGEG-GAGALKQMLKDLPQHREQMQKYSLHLD 349
Query: 384 IAGKINRIIRETGLRELGQLEQDLVFGDA-------GFKDVIKFLTAKEDITRENKLRLL 436
++ IN T + + EQ++V + F + + ++ E+KLR L
Sbjct: 350 MSNAINMAFSST-IDSCTKAEQNIVTEEEQDGNKVRDFIGEVASVVVDRRVSTEDKLRCL 408
Query: 437 MIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIH 496
M+ + + NL+ A + +A+ N+ +LG + + +
Sbjct: 409 MLCV-LAKNGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADRRG----------R 457
Query: 497 KKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSA 556
K K R +R + + LSR+ P++++L+E + +L + YP + D S
Sbjct: 458 KPKTMKRIER---DMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASK 514
Query: 557 LTNEVPAAHSMRSRRTPTWARPRSSDDGYSSD----SVLKHASSDFKKMGQ-RIFVFIVG 611
E + +R+ WA+ + ++ S +V + ++ + + ++FVFI G
Sbjct: 515 SVEEDDDGPATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFING 574
Query: 612 GTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKMLTAHELSLDDIQI 664
+ +E+R ++++ EV +G+ ++ P +F+ + +L + D+Q+
Sbjct: 575 TVSYNEIRCAYEVSQSSGYEVYIGAHNIATPAEFVELVSLLDKAD---QDVQV 624
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 97/384 (25%), Positives = 178/384 (46%), Gaps = 31/384 (8%)
Query: 43 WKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAF 102
WKVLI+D + +S ++ D+ + G+++ + + R PLP + AIYF+ PTKEN+
Sbjct: 58 WKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQDRSPLPDVPAIYFVSPTKENIDII 117
Query: 103 LSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVL---PRIGALREMNLEYFAVDSQG 159
++D+ KS Y + ++ F+S + R L+ + + ++ +I + + L++ + +
Sbjct: 118 VNDL--KSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPEL 175
Query: 160 FVTDDERALEELFGDEESSQK--ADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMT 217
F + A L D +++++ C N+ TV ++ P++ RAAK A
Sbjct: 176 FSLEISNAYLTL-NDPKTTEEEITGLCANIADGLFNTVL-TINSIPII--RAAKGGPAEI 231
Query: 218 ITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELLILDRSVDQIAPIIHEWTYDAI 277
I + + TKL V N T+Q E L+ILDR++D + H W Y
Sbjct: 232 IA---EKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASXFSHSWIYQCX 288
Query: 278 CHDLLNLEGNKYVHEVPSKTDG-------PPEKKEVLLEEHDPIWVELRHAHIADASERL 330
D+ L N + SK +G P K+ +E +D W E H +A+E +
Sbjct: 289 VFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWXENSHLPFPEAAENV 348
Query: 331 HEKMTGFVSKNKAAQI--QNGSRD------GSNLSTRDLQKLVQALPQYSEQIDKLSLHV 382
+ + K +AA+I + G + SN T +Q++V+ LP+ + + + + H
Sbjct: 349 EAALNTY--KEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHX 406
Query: 383 EIAGKINRIIRETGLRELGQLEQD 406
I + + L ++EQD
Sbjct: 407 NIFAALLSQLESKSLDTFFEVEQD 430
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain
Length = 159
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 19 KQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYR 78
+ + +R+L + K + WKVLI DR I+S + ++ G++L L+
Sbjct: 26 QTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHS 85
Query: 79 RRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISR 126
R P+ + A+YF+ PT+EN+ D+ + LY+ ++ F S ISR
Sbjct: 86 DRDPIRDVPAVYFVMPTEENIDRLCQDLRNQ--LYESYYLNFISAISR 131
>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1
pdb|4B8B|B Chain B, N-Terminal Domain Of The Yeast Not1
Length = 603
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 269 IHEWTYDAICHDLLNLEGNKYVHEVPSKT 297
+H+W+ C DLLN EG + V E T
Sbjct: 161 LHKWSVQNGCFDLLNAEGTRKVSETIPNT 189
>pdb|3H7J|A Chain A, Crystal Structure Of Bacb, An Enzyme Involved In Bacilysin
Synthesis, In Monoclinic Form
pdb|3H7J|B Chain B, Crystal Structure Of Bacb, An Enzyme Involved In Bacilysin
Synthesis, In Monoclinic Form
pdb|3H7Y|A Chain A, Crystal Structure Of Bacb, An Enzyme Involved In Bacilysin
Synthesis, In Tetragonal Form
pdb|3H7Y|B Chain B, Crystal Structure Of Bacb, An Enzyme Involved In Bacilysin
Synthesis, In Tetragonal Form
Length = 243
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 75 DLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYK 114
D+++ R LP ME +F++ E ++A + G+ P +K
Sbjct: 124 DIFKTRDLLPGMEVTFFVEDWVEIMLAKIPGNGGEMPFHK 163
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,210,242
Number of Sequences: 62578
Number of extensions: 743701
Number of successful extensions: 1874
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1820
Number of HSP's gapped (non-prelim): 13
length of query: 664
length of database: 14,973,337
effective HSP length: 105
effective length of query: 559
effective length of database: 8,402,647
effective search space: 4697079673
effective search space used: 4697079673
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)