Query 006024
Match_columns 664
No_of_seqs 168 out of 976
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 17:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300 Vesicle trafficking pr 100.0 6E-102 1E-106 822.1 53.8 575 17-652 2-584 (593)
2 PF00995 Sec1: Sec1 family; I 100.0 1.3E-90 2.8E-95 791.5 46.4 540 43-649 1-564 (564)
3 KOG1299 Vacuolar sorting prote 100.0 1.5E-86 3.3E-91 680.3 45.0 532 20-652 5-548 (549)
4 COG5158 SEC1 Proteins involved 100.0 8.7E-85 1.9E-89 706.4 51.6 568 17-655 3-580 (582)
5 KOG1302 Vacuolar sorting prote 100.0 3.8E-84 8.3E-89 688.8 43.3 558 11-649 10-599 (600)
6 KOG1301 Vesicle trafficking pr 100.0 9.9E-84 2.2E-88 667.3 43.9 571 14-656 8-618 (621)
7 PRK05581 ribulose-phosphate 3- 48.1 23 0.00049 35.0 4.2 44 605-652 171-214 (220)
8 PF14071 YlbD_coat: Putative c 40.5 29 0.00063 31.1 3.1 14 306-319 32-45 (124)
9 PRK08883 ribulose-phosphate 3- 38.8 36 0.00078 34.0 3.9 45 604-652 167-211 (220)
10 PLN02334 ribulose-phosphate 3- 37.4 33 0.00071 34.4 3.4 44 605-652 175-218 (229)
11 cd00564 TMP_TenI Thiamine mono 36.6 38 0.00082 32.4 3.6 45 604-652 150-194 (196)
12 PRK00043 thiE thiamine-phospha 29.0 54 0.0012 32.0 3.3 43 605-651 161-203 (212)
13 TIGR01163 rpe ribulose-phospha 27.7 71 0.0015 31.1 4.0 44 605-652 166-209 (210)
14 PRK10039 hypothetical protein; 25.8 1.3E+02 0.0028 27.2 4.7 41 610-650 80-125 (127)
15 TIGR00693 thiE thiamine-phosph 25.4 75 0.0016 30.7 3.6 42 605-650 153-194 (196)
16 PTZ00170 D-ribulose-5-phosphat 23.0 80 0.0017 31.7 3.3 44 604-651 173-216 (228)
17 cd00429 RPE Ribulose-5-phospha 21.8 1.1E+02 0.0024 29.6 4.1 43 605-651 167-209 (211)
18 PRK08745 ribulose-phosphate 3- 21.8 1.2E+02 0.0026 30.3 4.2 46 603-652 170-215 (223)
19 TIGR03128 RuMP_HxlA 3-hexulose 21.0 1.1E+02 0.0023 29.8 3.8 42 605-650 159-200 (206)
20 PF12327 FtsZ_C: FtsZ family, 20.2 1.9E+02 0.0042 24.6 4.6 37 601-637 35-76 (95)
No 1
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-102 Score=822.11 Aligned_cols=575 Identities=42% Similarity=0.712 Sum_probs=495.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEEecCCH
Q 006024 17 NFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTK 96 (664)
Q Consensus 17 ~l~~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~ 96 (664)
+|++..+++++..+++ +. ....|||||+|+.+++|+|+||+|++++++||++|+.|++.|+|+|.+.|||||+|+.
T Consensus 2 ~l~~l~~~kil~~v~~-~~---k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~ 77 (593)
T KOG1300|consen 2 GLKELVKKKILEDVLR-VE---KKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTE 77 (593)
T ss_pred chHHHHHHHHHHHhcc-cC---CCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCch
Confidence 4788999999988887 32 2347999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcCCCc
Q 006024 97 ENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEE 176 (664)
Q Consensus 97 ~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~~ 176 (664)
++|+++++||..+.|.|+.+||||+..||+.++..+.+ ..+...|+++.|++++|+|+|+++|+++.+++|..+|.+.
T Consensus 78 ~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~- 155 (593)
T KOG1300|consen 78 ESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD- 155 (593)
T ss_pred hhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh-hhHhhhhhhheecccccceecceeeeecChhhHHHhcCch-
Confidence 99999999997667899999999999999999999974 4567889999999999999999999999999999999975
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcCCCCCCCCeeEE
Q 006024 177 SSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSETCELL 256 (664)
Q Consensus 177 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~~~~~~Li 256 (664)
+.......+..+|++|++||.++|++|.|||++.....| ..+|+++|.++++.+..|+.+.+++|..+++.||
T Consensus 156 ~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~a-------s~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLl 228 (593)
T KOG1300|consen 156 NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNA-------SELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELL 228 (593)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCH-------HHHHHHHHHHHHHHHHhcccccCCCCCcccceEE
Confidence 445557899999999999999999999999998865544 2689999999999999998777788888899999
Q ss_pred EecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhccHHHHHHHHHHHHHH
Q 006024 257 ILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTG 336 (664)
Q Consensus 257 IlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~ 336 (664)
|+||++|+++|+||+||||||+||+++|++|.|.|+.+...|+ .+|+++|+++|++|.++||+||++|.+.|++.+++
T Consensus 229 IlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~--~kk~vllde~D~~WveLRH~HIadvse~l~~~~k~ 306 (593)
T KOG1300|consen 229 ILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGE--KKKEVLLDEDDDLWVELRHKHIADVSERLTKKMKN 306 (593)
T ss_pred EEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCC--ccceeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987655443 37889999999999999999999999999999999
Q ss_pred HHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcCCC-cHH
Q 006024 337 FVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDA-GFK 415 (664)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g~~-~~~ 415 (664)
|..+++.... +++..|+.||+.+|++||+|+++..+++.|+.||++|++.++. .+.+++.+||++++|.+ ..+
T Consensus 307 f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~ 380 (593)
T KOG1300|consen 307 FSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGE 380 (593)
T ss_pred HHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccc
Confidence 9998865433 3446799999999999999999999999999999999999988 99999999999999943 333
Q ss_pred H-------HHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccccccCCC
Q 006024 416 D-------VIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGA 488 (664)
Q Consensus 416 ~-------~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~ 488 (664)
. +++.+. ..+++..||+|++++|.+. .+|+...+..+|+++.|++.++..++.+++.+|..... +.
T Consensus 381 kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~-----~~ 453 (593)
T KOG1300|consen 381 KIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTK-----DS 453 (593)
T ss_pred cHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCCcccc-----Cc
Confidence 3 333443 4678999999999999998 57999999999999999999999999999999876543 22
Q ss_pred CccchhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCccccccc
Q 006024 489 FSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMR 568 (664)
Q Consensus 489 ~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~r 568 (664)
+..+| ..+.++++. .+..|.+|||+|.++.|+|.+++++|++++|||+.+++....|. ...
T Consensus 454 ~~~k~-----~~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~-------------~~~ 514 (593)
T KOG1300|consen 454 FLLKF-----DPPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGS-------------AAT 514 (593)
T ss_pred ccccC-----CCCcccccc-ccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccC-------------ccc
Confidence 22222 222255664 78899999999999999999999999999999998765221111 112
Q ss_pred CCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHH
Q 006024 569 SRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITK 648 (664)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~ 648 (664)
++|++.|.+..... .....++++||||+||+||+|+|++|++++..+++|+||||+|++|.+|++.
T Consensus 515 Sar~~~~~~~k~~~--------------~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EViiGS~~iltP~~fL~~ 580 (593)
T KOG1300|consen 515 SARYGHPLSNKTPS--------------AFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREVIIGSDHILTPTKFLDD 580 (593)
T ss_pred cccccCcccccCcc--------------hhhccCceEEEEEeCCccHHHHHHHHHHHHhhCceEEECCcccCCHHHHHHH
Confidence 23334454432210 1235789999999999999999999999999999999999999999999999
Q ss_pred Hhcc
Q 006024 649 LKML 652 (664)
Q Consensus 649 l~~l 652 (664)
|+.+
T Consensus 581 lk~~ 584 (593)
T KOG1300|consen 581 LKLL 584 (593)
T ss_pred Hhhc
Confidence 9943
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=1.3e-90 Score=791.47 Aligned_cols=540 Identities=32% Similarity=0.574 Sum_probs=409.9
Q ss_pred eEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEEecCCHHHHHHHHHHhccCCCCcceEEEEecC
Q 006024 43 WKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSS 122 (664)
Q Consensus 43 ~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~~~i~~i~~d~~~~~~~y~~~~i~F~~ 122 (664)
|||||+|+.++++||++|++++|+++||++++.|++.|+|+|+++|||||+|+.+|+++|++|+++ +.|++|||+|++
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~~~~iy~i~p~~~~i~~i~~~~~~--~~~~~~~i~f~~ 78 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPSMDAIYFIRPTPENIKRIIKDLKN--PPYRSYHIFFTP 78 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTTSEEEEEE-S-HHHHHHHHHHCHS--TSBSEEEEEESS
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCCcceEEEEcCcHHHHHHHHHHHHh--cccccEEEEEeh
Confidence 999999999999999999999999999999999999999999999999999999999999999975 899999999999
Q ss_pred CCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcC-CCcChhhHHHHHHHHHHHHHHHHHHhCC
Q 006024 123 PISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFG-DEESSQKADACLNVMATRIATVFASLRE 201 (664)
Q Consensus 123 ~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~-~~~~~~~~~~~l~~ia~~L~sl~~~lg~ 201 (664)
.+++..++.|++ .++.++|.++.|+++||+|+|+|+|+|++|++|..+|. +.+ .+.++++|++|+++|.++|.
T Consensus 79 ~~~~~~~~~l~~-~~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~-----~~~l~~~a~~L~~l~~~~g~ 152 (564)
T PF00995_consen 79 RVSESLLEILAE-SGVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGD-----ESSLQRIADSLLSLQLTLGE 152 (564)
T ss_dssp ---HHHHHHHHH-SCGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGH-----HHHHHHHHHHHHHHHHHTT-
T ss_pred hhhhHHHHhhhh-cCccceecccccceeEEEEccchhhhhcccchHHHHhccccc-----hhHHHHHHHHHHHHHHHhCC
Confidence 999999999987 56899998899999999999999999999999999998 555 68899999999999999999
Q ss_pred ccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHh----hhhcCCCC---CCCCeeEEEecCCCCccchhhhhhhh
Q 006024 202 FPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKY----KQTIQNFP---MSETCELLILDRSVDQIAPIIHEWTY 274 (664)
Q Consensus 202 ~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~----~~~~~~~~---~~~~~~LiIlDR~~D~iTPLlh~~TY 274 (664)
+|.|||+|+. .|+++|..+.+.+.+. ....+.++ ..++++|||+||++|++|||||||||
T Consensus 153 ~p~I~~~g~~-------------~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TY 219 (564)
T PF00995_consen 153 IPNIRYKGNS-------------NAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTY 219 (564)
T ss_dssp --EEEE-TTC-------------HHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BH
T ss_pred CCeEEEeCch-------------hHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCcee
Confidence 9999999982 3556666666665552 22223332 12358999999999999999999999
Q ss_pred hHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhccHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCC
Q 006024 275 DAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGS 354 (664)
Q Consensus 275 qaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 354 (664)
||||||+|||++|.|+++.+...+ ..++++.|+++|++|+++||+||++|++.|.++++++++++ .. ..++
T Consensus 220 e~li~d~~~i~~~~v~~~~~~~~~--~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~~------~~~~ 290 (564)
T PF00995_consen 220 EGLIDDLFGINNNKVEIPDEINSG--ENKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEY-EK------SRSK 290 (564)
T ss_dssp HHHHHHHSTEBTTEEEEEECSSSS--ECEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHC-H----------S
T ss_pred eeEHHhhhhhcCCEeccccCCCcc--ccceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-cc------ccch
Confidence 999999999999999998743332 12478999999999999999999999999999999998654 10 1345
Q ss_pred CCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcCCCcHH----HHHHHhhhcCCCCch
Q 006024 355 NLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFK----DVIKFLTAKEDITRE 430 (664)
Q Consensus 355 ~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g~~~~~----~~~~~i~~~~~~~~~ 430 (664)
..++++|++||++||+++++++.+++|++|+++|++.+++++|.+++++||+|++|.+..+ .+.++|. ....+.+
T Consensus 291 ~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~-~~~~~~~ 369 (564)
T PF00995_consen 291 SKSIQEMKEFVKKLPELQEQQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELIN-SRKISIE 369 (564)
T ss_dssp TTTHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHH-STTSTHH
T ss_pred hhHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhh-ccCCCHH
Confidence 7799999999999999999999999999999999999999999999999999999875432 3788885 3678999
Q ss_pred hHHHHHHHHHHhCCCCCCc---hHHHHHHHHcCCChhHHHHHHHHHHhcCccccccccCCCCccchhhhhhhhhc---c-
Q 006024 431 NKLRLLMIVASIYPEKFEG---EKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTIGAFSLKFDIHKKKRAA---R- 503 (664)
Q Consensus 431 dkLRLl~L~~l~~~~g~~~---~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~~k~~~~~---~- 503 (664)
++|||+|||+++. |++. +.+++++.+.|++.+++.++.+|+++|+...+.++ ..|... .+.+++. .
T Consensus 370 d~LRLl~L~sl~~--g~~~~~~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~~--~~~~~~---~~~~~l~~~~~~ 442 (564)
T PF00995_consen 370 DKLRLLCLYSLTN--GIKGKDYDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDNS--SNFQSI---RKKLNLISKFND 442 (564)
T ss_dssp HHHHHHHHHHHHH---HTCBHHHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHTT--S--CTT---C-TT---HHTTC
T ss_pred HHHHHHHHHHHHh--cCCcchHHHHHHHhhhcCCChHHHHHHHHHHHhcchhhccCc--cchhhh---cccccccccccc
Confidence 9999999999993 4543 33556666666666999999999999988765210 012111 1222221 1
Q ss_pred --cCCCCCCcccccccccHHHHHHHHHHhcCCCC-CCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCCccCCCC
Q 006024 504 --KDRSGGEETWQLSRFYPMIEELVEKLGKNELS-KDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRS 580 (664)
Q Consensus 504 --~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~-~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~r~~~~~~~~~~~~ 580 (664)
....+.+.+|+|+||+|+++++|+.+.+++++ ++.||++........+. ..+++..+ +.|....
T Consensus 443 ~~~~~~~~~~~~~~~~y~Pli~rlve~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~- 509 (564)
T PF00995_consen 443 KNDKNNPKDISYVYSGYAPLIVRLVEDLIKGKLDKEEEFPYLDPKPKNLNGS-----------SFSLRSSK-PSRSKTQ- 509 (564)
T ss_dssp CCSSSSCSCCCSTTCT---HHHHHHHHHHTTHSHHTTTSEBSSTCC-----S-----------SSSSS------------
T ss_pred cccccccccccchhcccccHHHHHHHHHhhccCCcccccccccccccccCCC-----------Cccccccc-ccccccc-
Confidence 12246789999999999999999999999997 88999987543211111 01222111 1111100
Q ss_pred CCCCCCccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhCC--CeEEEccCcccChhHHHHHH
Q 006024 581 SDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN--REVVLGSSSLDDPPQFITKL 649 (664)
Q Consensus 581 ~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~~~~--~~iiigsT~I~~~~~fi~~l 649 (664)
....+.+++||||||||||+|+|++|+++++.+ ++|+||||+|+||++|+++|
T Consensus 510 ----------------~~~~~~~~viVf~vGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 510 ----------------PSNKPRKRVIVFFVGGVTYSEIRALRELSKKLGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp -------------------S-SSEEEEEEETEBEHHHHHHHHHHHTTSSSSSEEEEEESSBE-HHHHHHHH
T ss_pred ----------------cccCCCCEEEEEEEcCCcHHHHHHHHHHHHhhCCCcEEEEEeCCccCHHHHHHhC
Confidence 011357889999999999999999999999988 99999999999999999986
No 3
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-86 Score=680.29 Aligned_cols=532 Identities=25% Similarity=0.432 Sum_probs=440.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEecccc-CCCCCCCCeEEEEecCCHHH
Q 006024 20 QITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYR-RRQPLPSMEAIYFIQPTKEN 98 (664)
Q Consensus 20 ~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~-~r~~~~~~~aIy~i~Pt~~~ 98 (664)
...|..+ +.|+.... ++.|||++|+.|..++|.|+++|+|+++.|.++++|++ .|+.+.+.+||+|||||++|
T Consensus 5 ~~~k~yi-~~m~~~~g-----~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~khLkcvvfiRPT~en 78 (549)
T KOG1299|consen 5 SSSKKYI-EKMIQESG-----PGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERIKHLKCVVFIRPTPEN 78 (549)
T ss_pred HHHHHHH-HHHHHhcC-----CCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHhhCceEEEEeccChHH
Confidence 3455555 47776553 35999999999999999999999999999999999987 78999999999999999999
Q ss_pred HHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcCCCcCh
Q 006024 99 VVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEESS 178 (664)
Q Consensus 99 i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~~~~ 178 (664)
|+++++++++ |+|.+|||||+|.+|+..++.||+ ++....|+.|.|+++||+++++++|||++|++|..... |
T Consensus 79 iq~L~~ELrn--Pry~~Y~lyFsN~i~ks~le~LAe-sD~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~~~---w- 151 (549)
T KOG1299|consen 79 IQLLIEELRN--PRYGEYHLYFSNIISKSDLERLAE-SDEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESSLN---W- 151 (549)
T ss_pred HHHHHHHhcC--CcceeEEEEEeccCCHHHHHHHHh-cchHHHHHHHHHHHHhhhccCCceeecCCchhhccccc---c-
Confidence 9999999964 999999999999999999999997 46678888999999999999999999999998876422 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcCCCCCCC-CeeEEE
Q 006024 179 QKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPMSE-TCELLI 257 (664)
Q Consensus 179 ~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~~~-~~~LiI 257 (664)
....+.++.+||++++.+|+..|.|||++++ ..|+++|+.+...+.+ .++..+|+.++ .|+|||
T Consensus 152 --~~~~l~R~~~GI~AllLsLK~~P~IRYq~~S------------~~~~~lAe~vs~~i~~-E~~lFdfr~~~~~p~LLi 216 (549)
T KOG1299|consen 152 --DPGALTRSTQGIIALLLSLKKKPVIRYQTSS------------RACKRLAEEVSYRITK-ESTLFDFRRTDSPPLLLI 216 (549)
T ss_pred --ChhhhhHhHhhHHHHHHhccCCCeeEeecCC------------HHHHHHHHHHHHHHhh-hhhhcccccCCCCCeEEE
Confidence 2678999999999999999999999999885 4689999999888876 45567787644 689999
Q ss_pred ecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecC-CCChHHHHhhhccHHHHHHHHHHHHHH
Q 006024 258 LDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLE-EHDPIWVELRHAHIADASERLHEKMTG 336 (664)
Q Consensus 258 lDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~-~~D~~~~~~R~~~~~~v~~~l~~~~~~ 336 (664)
+||+.||+||||+|||||||+||++||+||+|.+.. .++.+.+.++++|+ .+|+||+..++.+|+|+++.|+..+.+
T Consensus 217 LDR~~DpvTPLL~qWTYQaMvHEl~gi~nnrvdls~--~~~~~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~~ 294 (549)
T KOG1299|consen 217 LDRRDDPVTPLLNQWTYQAMVHELLGIKNNRVDLSK--VPSIPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLVSE 294 (549)
T ss_pred EecCCCCCchhhhHHHHHHHHHHHhccccCEEeecc--CCCCccccceeeeccccchHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999975 33334445677776 799999999999999999999999999
Q ss_pred HHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcCCCc---
Q 006024 337 FVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAG--- 413 (664)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g~~~--- 413 (664)
|+.+-+ +..+..|++||++|+..+|+|+++...+++|+.+..++++..+.++|.+++|+||++++..+.
T Consensus 295 fq~k~~--------~~~~iesi~Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~ 366 (549)
T KOG1299|consen 295 FQFKTK--------TNSNIESIADMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGAD 366 (549)
T ss_pred HHHhhh--------hchhhhhHHHHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhh
Confidence 987432 123467999999999999999999999999999999999999999999999999999996543
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchHHHHHHH---HcCCChhHHHHHHHHHHhcCccccccccCCCCc
Q 006024 414 FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMK---LAKLTADDMTAVNNMRLLGGALESKKSTIGAFS 490 (664)
Q Consensus 414 ~~~~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq---~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~ 490 (664)
..++.++|. +..++..|++||+|||+|.|+ ..++.+..++++ .-|- ..-.++.-|.++++...+.. ..|+
T Consensus 367 ~~~i~~LL~-n~~vs~~d~lrLv~lYaLr~e-~~~~~~~~~L~~~l~~~~~--~~~~~v~~ll~~~G~~~R~~---dlf~ 439 (549)
T KOG1299|consen 367 FNDIKKLLQ-NEKVSEIDRLRLVALYALRYE-RHPPNELRQLPQILREQGP--KKPELVPFLLKYAGLHVRQG---DLFG 439 (549)
T ss_pred HHHHHHHHc-CCcccHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHhcCC--CcchhHHHHHHhcCcccccc---cccC
Confidence 346677787 478999999999999999995 455656655543 3343 23455666667776665531 1232
Q ss_pred cc--hhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCccccccc
Q 006024 491 LK--FDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMR 568 (664)
Q Consensus 491 ~~--f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~r 568 (664)
.. +.+ .++. .+..++.++.| .+|.|+++++++.+.+|++++-.||++.... +
T Consensus 440 ~~~~v~i--~R~~-~kglkgvENVy--tQH~P~lk~~l~~~~rgRl~~~~~p~l~~~~-------------------s-- 493 (549)
T KOG1299|consen 440 PNDLVPI--ARRF-IKGLKGVENVY--TQHQPLLKSTLEDLFRGRLKEIDYPFLGSQT-------------------S-- 493 (549)
T ss_pred cchhHHH--HHHH-hhccCcchhhh--hccCHHHHHHHHHHHhcccccCCCccccccc-------------------c--
Confidence 22 221 1111 12224555655 6999999999999999999988899885210 0
Q ss_pred CCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHh-hCCCeEEEccCcccChhHHHH
Q 006024 569 SRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTA-KLNREVVLGSSSLDDPPQFIT 647 (664)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~-~~~~~iiigsT~I~~~~~fi~ 647 (664)
+..++.|||||+||+||+|.|.+++++. ..|.+|++|+|.|+|.+.|++
T Consensus 494 ------------------------------~~~pq~IIVfivGGaTYEEa~~V~~~N~tn~g~rvvLgGttvlntk~f~~ 543 (549)
T KOG1299|consen 494 ------------------------------RDRPQDIIVFIVGGATYEEARVVHELNATNPGVRVVLGGTTVLNTKSFID 543 (549)
T ss_pred ------------------------------cCCCceEEEEEECCccHHHHHHHHHHhcCCCceEEEEcceEEechHHHHH
Confidence 1257899999999999999999999975 468999999999999999999
Q ss_pred HHhcc
Q 006024 648 KLKML 652 (664)
Q Consensus 648 ~l~~l 652 (664)
++...
T Consensus 544 di~~a 548 (549)
T KOG1299|consen 544 EIMAA 548 (549)
T ss_pred HHhcc
Confidence 98753
No 4
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=8.7e-85 Score=706.44 Aligned_cols=568 Identities=25% Similarity=0.413 Sum_probs=448.4
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEEecCCH
Q 006024 17 NFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTK 96 (664)
Q Consensus 17 ~l~~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~ 96 (664)
+|++.++.+|+ +++..|.+ ...|||||+|+.+..|||+|+++++|++|||+++++|++.|+|.++.+|||||+||.
T Consensus 3 dl~e~q~~~i~-~~i~~v~~---~n~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~~~~~aiy~v~pt~ 78 (582)
T COG5158 3 DLLELQKNKIL-DEIFLVQP---ANIWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPISDLPAIYFVRPTK 78 (582)
T ss_pred cHHHHHHHHHH-HHHHhcCC---CcceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCCCCCCEEEEEcCch
Confidence 58999999999 68888863 236999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcCCCc
Q 006024 97 ENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEE 176 (664)
Q Consensus 97 ~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~~ 176 (664)
+|+++|++|+.+..|.|..||+.|++.++..++|.+++ .++...|..|.++++||+++|+++|++++|..|...+.+..
T Consensus 79 e~i~~i~~D~~~~~~~Y~~~~~~f~~~~~~~l~e~l~e-s~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~~~~~~~~~~ 157 (582)
T COG5158 79 ENIDLILEDLEQWDPFYLNYHISFLNTVTESLLELLAE-SGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLESSLPST 157 (582)
T ss_pred HHHHHHHHHHhccCccccceeEEecccchHHHHHHHhh-cCchhheeeeeeeecceEEechHhHhhcCchhhhhhcCCCc
Confidence 99999999998656899999999999999998888886 67888899999999999999999999999999988888654
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcCCCC---CCCCe
Q 006024 177 SSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFP---MSETC 253 (664)
Q Consensus 177 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~---~~~~~ 253 (664)
...+-.|+.||+++|.++|.+|.|||.+++ .|.++|+++-..+........++. .+.++
T Consensus 158 -----~~~~~~~v~gl~S~~~slg~~P~Ir~~~~~-------------~a~~~ak~l~~~~~~~~~~~~~~~~~~~~~~~ 219 (582)
T COG5158 158 -----TEALIKIVNGLFSLCVSLGRIPIIRYSGGK-------------NAEHMAKKLSDEIRNELSINFDGVVSKNPLRP 219 (582)
T ss_pred -----hHHHHHHHhhHHHHHhhcCCcceEEecCCc-------------hHHHHHHHHHHHHHHHHHhhcccccccCCCCc
Confidence 234448999999999999999999998863 355556655554443322222221 12479
Q ss_pred eEEEecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhccHHHHHHHHHHH
Q 006024 254 ELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEK 333 (664)
Q Consensus 254 ~LiIlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~ 333 (664)
+|||+||+.|++|||+|+||||||+||+++|++|.|+++.....| ++++...++.+|+||.++||+||++|++.|++.
T Consensus 220 ~LIIlDRs~D~iTPlLh~wTYqaml~Dl~~~~~~~v~~~~~~~~g--~~kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~~ 297 (582)
T COG5158 220 ILIILDRSLDPITPLLHQWTYQAMLHDLLGINNNIVTIPSSSVNG--PEKKFSLSDKDDPFWNDNKFLNFGEVGEKLKKL 297 (582)
T ss_pred eEEEEecCCCcccchHHHHHHHHHHHHHHHhhcCeEEeccccccc--ccceeccCCcccHhHHHhccCchhhHHHHHHHH
Confidence 999999999999999999999999999999999999997654544 556666778899999999999999999999999
Q ss_pred HHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcCCCc
Q 006024 334 MTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAG 413 (664)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g~~~ 413 (664)
+++|+.+++. +. .....++.||++||.+||++++.++++.+|++|+++|+++++++.|.+++++||++.++.+.
T Consensus 298 ~~~l~~~~~~--~~----~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~~ 371 (582)
T COG5158 298 AKELKTKAQL--RH----KENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNLSTGNDV 371 (582)
T ss_pred HHHHHHHHhh--hh----hhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 9999987642 22 12357999999999999999999999999999999999999999999999999999988754
Q ss_pred HHHHHHHhhhcCCCCch-hHHHHHHHHHHhCCCCC-CchHHHHHHHHcCCChhHHHHHHHHHHhcCccccccccC----C
Q 006024 414 FKDVIKFLTAKEDITRE-NKLRLLMIVASIYPEKF-EGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKSTI----G 487 (664)
Q Consensus 414 ~~~~~~~i~~~~~~~~~-dkLRLl~L~~l~~~~g~-~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~----~ 487 (664)
...+.++|........+ +||||+|||+++. +|+ .+.+..+++..-|++.+++..+.+|..+|....+..... +
T Consensus 372 ~~~i~Dli~~l~~~~~E~~klRllilysL~~-~~~~~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~~~g 450 (582)
T COG5158 372 KSDISDLIELLESGVEEDDKLRLLILYSLTK-DGLIKDIDELRLLRIQGYGIEALNFFQRLKELGFLTLKDSKTISLKRG 450 (582)
T ss_pred hhhHHHHHHHHhcCchHHHHHHHHHHHHHhc-CcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhhcccccccccC
Confidence 33444444431122233 5999999999997 463 344455666677888899999999999987744321100 1
Q ss_pred CCccchhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcccccc
Q 006024 488 AFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSM 567 (664)
Q Consensus 488 ~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~ 567 (664)
.-...|+........+..+...+..++|++|.|..+++...++.+.+.+..++.+.. +.
T Consensus 451 ~~d~l~~~~n~y~~s~~~~~~~~~~~v~~~~iP~~k~~~~~~~~~~~~~~~~s~~~~---------------------s~ 509 (582)
T COG5158 451 DKDSLFQWFNTYSLSREHQGVPDLENVYSGLIPLKKDIPIDLLVRRLFEPLKSSQQQ---------------------SL 509 (582)
T ss_pred CcccccCcccccccccccCCCchHHHHHHhhcchhcccchhhhhhhhcccccchhcc---------------------ce
Confidence 100011100001111111235667888999999999999999988765444332220 11
Q ss_pred cCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhCC-CeEEEccCcccChhHHH
Q 006024 568 RSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REVVLGSSSLDDPPQFI 646 (664)
Q Consensus 568 r~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~~~~-~~iiigsT~I~~~~~fi 646 (664)
+..+ +.| +.++. ...++++++|||+||+||.|++++++++.+.+ ++|++|||.|+||.+||
T Consensus 510 ~~~~-~k~-~~~~~----------------~~~~~~~~~VfviGG~ty~E~~~~~e~~~~~~~~~ii~Gst~iltp~e~l 571 (582)
T COG5158 510 RLSR-PKG-RSRSN----------------KKIPQQRILVFVIGGVTYEELRVLYELNESQNSVRIIYGSTEILTPAEFL 571 (582)
T ss_pred eecc-ccc-ccccc----------------cccccceEEEEEECCeehHHHHHHHHHHhhcCCeeEEEcCCceecHHHHH
Confidence 1111 122 11110 01358999999999999999999999999887 99999999999999999
Q ss_pred HHHhccCCC
Q 006024 647 TKLKMLTAH 655 (664)
Q Consensus 647 ~~l~~l~~~ 655 (664)
+++..++..
T Consensus 572 ~~v~~~~~~ 580 (582)
T COG5158 572 DEVKRLGGS 580 (582)
T ss_pred HHHHHhccc
Confidence 999988654
No 5
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-84 Score=688.81 Aligned_cols=558 Identities=19% Similarity=0.315 Sum_probs=454.3
Q ss_pred CCCChhhHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCC-CCCeEE
Q 006024 11 YGGDYKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPL-PSMEAI 89 (664)
Q Consensus 11 ~~~~~~~l~~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~-~~~~aI 89 (664)
...++..+++.++++|+ ++|++++ | .|+||+|+.++++|+++.+++.|.+|||.....++..+.|. .....|
T Consensus 10 ~~~~l~~lq~~a~~eL~-~lLds~p-G-----~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~~~~~~~v 82 (600)
T KOG1302|consen 10 ADLNLQGLQEVARRELI-SLLDSLP-G-----KKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPNSEVKQVV 82 (600)
T ss_pred ccchHHHHHHHHHHHHH-HHHhcCC-C-----ceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcccccCeEE
Confidence 45788999999999999 8999998 5 99999999999999999999999999998777777665333 345799
Q ss_pred EEecCCHHHHHHHHHHhcc--CCCCcceEEEEecCCCCHH--HHHHHHhCCCcccccceeEEEecceeeccCCceeeCCc
Q 006024 90 YFIQPTKENVVAFLSDMSG--KSPLYKKAFVFFSSPISRE--LVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDE 165 (664)
Q Consensus 90 y~i~Pt~~~i~~i~~d~~~--~~~~y~~~~i~F~~~~p~~--~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~ 165 (664)
||+||+.++++.|++++.+ +...-+.||++| +|+. +|+.+.++.++++.+ .+.|++++++|+|.|++||+.|
T Consensus 83 y~~Rp~~~~~~~ia~~v~~~~~d~~~r~~~vi~---~P~~~~~c~~~Lee~gv~~~v-~~~e~~~~~lpld~DllSlEl~ 158 (600)
T KOG1302|consen 83 YFVRPRLENMQLIAEHVENVQRDGFTRDYHVIF---VPRRSSLCETLLEEEGVYGLV-LVEEQILDLLPLDGDLLSLELP 158 (600)
T ss_pred EEEcCchHHHHHHHHHHhhhhhchhcceeEEEE---eccHHHHHHHHHHhccccccc-ccchhhhhhccccccchhccch
Confidence 9999999999999999975 334678999999 7764 588888889999888 8999999999999999999999
Q ss_pred chhhhhcCCCcChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcC
Q 006024 166 RALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQ 245 (664)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~ 245 (664)
+.|.++|.+++ .+.+..+|+++.+++.++|.+|.|+..|+ .|+++++++.+..++..
T Consensus 159 ~~~~d~~~~gd-----~s~l~~va~~l~~LQ~~~G~ip~v~g~G~------------------~ak~~~~l~~~l~~e~~ 215 (600)
T KOG1302|consen 159 NSFLDLYLDGD-----QSSLYHVADALVSLQRLYGIIPKVYGKGE------------------CAKRVWELLKKLEREEA 215 (600)
T ss_pred HHHHHHhhccc-----cchhHHHHHHHHHHHHhhCCCcceeeccH------------------HHHHHHHHHHHHhhccc
Confidence 99999999888 67899999999999999999999999998 46677777766655432
Q ss_pred --CCC-CCCCeeEEEecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCC----CC----CCCcceEEecCCCChH
Q 006024 246 --NFP-MSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSK----TD----GPPEKKEVLLEEHDPI 314 (664)
Q Consensus 246 --~~~-~~~~~~LiIlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~----~g----~~~~~k~~~l~~~D~~ 314 (664)
+.+ .+++++||++||++||+||||||+||+||+||+|||++|.|+++.+.. .| +..+.+.+.++..|++
T Consensus 216 t~n~~~~~~~~~liLlDR~~D~vtpLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~deI 295 (600)
T KOG1302|consen 216 TENNGDRPEIDHLILLDRDVDPVTPLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSDEI 295 (600)
T ss_pred cccCCCccccceEEEEeccCcccchhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHHHH
Confidence 112 245789999999999999999999999999999999999999876421 11 2345567778899999
Q ss_pred HHHhhhccHHHHHHHHHHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHh
Q 006024 315 WVELRHAHIADASERLHEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRE 394 (664)
Q Consensus 315 ~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~ 394 (664)
|+++|++||+.|++.+++++++++..++. +.+.++++||++||++||.+++.++.++.|+++|+.+++.+++
T Consensus 296 y~eiR~k~f~~v~~~lsk~ak~l~~~~~~--------r~~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~~ 367 (600)
T KOG1302|consen 296 YAEIRNKHFNAVGPLLSKKAKELQAQYET--------RRQAMSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVKN 367 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999987652 3568899999999999999999999999999999999999999
Q ss_pred hhhhHHHHHhhhhhcCCCcHHHHHHHhhh--cCCCCchhHHHHHHHHHHhCCCCCCchH----HHHHHHHcCCChhHHHH
Q 006024 395 TGLRELGQLEQDLVFGDAGFKDVIKFLTA--KEDITRENKLRLLMIVASIYPEKFEGEK----GLNLMKLAKLTADDMTA 468 (664)
Q Consensus 395 ~~l~~~~~lEq~i~~g~~~~~~~~~~i~~--~~~~~~~dkLRLl~L~~l~~~~g~~~~~----~~~llq~~g~~~~~~~~ 468 (664)
.+|.+++.+||+++.|.+..+. +++|++ ....+...+|||+||.|+|. +|+++++ +++++|.||+ +++.+
T Consensus 368 ~~f~~~l~lE~ell~~~d~~k~-~~~IeElI~~~~~~~~vLRLicL~Slt~-~Gl~~k~l~~~rr~~lqsYG~--ehl~t 443 (600)
T KOG1302|consen 368 EDFRKLLKLEHELLEGNDSDKD-FDYIEELIYQEVPLNNVLRLICLLSLTC-NGLKPKDLDHYRREYLQSYGY--EHLLT 443 (600)
T ss_pred HHHHHHHHHHHHHHhccCcccc-hHHHHHHHhhcccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhhH--HHHHH
Confidence 9999999999999999876544 555544 24789999999999999987 6998765 4678999999 99999
Q ss_pred HHHHHHhcCccccccccC-------CCCccchhhhhhhhhccc---CCCCCCcccccccccHHHHHHHHHHhcCCCCCCC
Q 006024 469 VNNMRLLGGALESKKSTI-------GAFSLKFDIHKKKRAARK---DRSGGEETWQLSRFYPMIEELVEKLGKNELSKDD 538 (664)
Q Consensus 469 l~~L~~lg~~~~~~~~~~-------~~~~~~f~~~k~~~~~~~---~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~ 538 (664)
|.||+++|++..+...+. ..|+.. .+...++.+ +.+|.|++|+||||+|+++||+|.+++...-.+.
T Consensus 444 l~nL~kaGLl~~q~~~~~~~~~~~~~~~st~---~ntl~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~~~ 520 (600)
T KOG1302|consen 444 LQNLEKAGLLREQTGGRKLHTKSSKRNYSTW---ANTLPLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQEL 520 (600)
T ss_pred HHHHHHcCCcccccCCCcchhhHHHHHHHHH---HhcCCCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchhhh
Confidence 999999999987642210 022222 233444443 3469999999999999999999999998544444
Q ss_pred CCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCHHHH
Q 006024 539 YPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSEL 618 (664)
Q Consensus 539 ~p~i~~~~~~~~g~~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi 618 (664)
|--+... +|.... . .+|....- ..++..+ ...+.++|||+||+||+||
T Consensus 521 ~~~i~~l----~g~~~e-------------~---~~~~~~~~---------~~~~~~~---g~~R~~lVff~GG~T~~EI 568 (600)
T KOG1302|consen 521 YSKIRNL----PGPHFE-------------E---VTWTPSDI---------ASKNNSP---GALRVTLVFFLGGCTYAEI 568 (600)
T ss_pred HHHHccC----CCCchh-------------h---cccChhhh---------cccccCC---CCcceEEEEEECCccHHHH
Confidence 4333221 111100 0 01111000 0000001 1378999999999999999
Q ss_pred HHHHHHHhhCCCeEEEccCcccChhHHHHHH
Q 006024 619 RVCHKLTAKLNREVVLGSSSLDDPPQFITKL 649 (664)
Q Consensus 619 ~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l 649 (664)
||+|+|++..|++|+|+||+++|+.++|+.+
T Consensus 569 Aalr~l~~~~~~~f~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 569 AALRFLAKLEGYRFLIATTGLINGSSLLEAI 599 (600)
T ss_pred HHHHHHHhhcCceEEEEeccccchHHHHHhh
Confidence 9999999999999999999999999999976
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-84 Score=667.34 Aligned_cols=571 Identities=23% Similarity=0.385 Sum_probs=451.8
Q ss_pred ChhhHHHHHHHHHHHHHHHhhcC----CCC-CCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeE
Q 006024 14 DYKNFKQITRERLLYEMLRSAKT----GKS-KSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEA 88 (664)
Q Consensus 14 ~~~~l~~~~~~~l~~~~L~~v~~----g~~-~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~a 88 (664)
-..+||+.|-..+. .||+--.+ +.. ++.|||||+|..++.|||++++++||++||||++..|.+.|+|+|+++|
T Consensus 8 ~~~slRe~Qi~al~-~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~DVPA 86 (621)
T KOG1301|consen 8 AAASLRERQIVALK-KMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPDVPA 86 (621)
T ss_pred hhhhHHHHHHHHHH-HHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCCCCe
Confidence 35689999999998 78875321 222 6789999999999999999999999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHh---CCCcccccceeEEEecceeeccCCceeeCCc
Q 006024 89 IYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLEYFAVDSQGFVTDDE 165 (664)
Q Consensus 89 Iy~i~Pt~~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~le~la~---~~~~~~~i~~i~e~~ldfipld~dlfsl~~~ 165 (664)
||||+||.||+++|++|+++ .+|.+||++|++++||..+|.||. +.|...+|++|++.++|||.+|+|+|+|.++
T Consensus 87 VYFV~Pt~eNid~i~~Dl~~--~lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL~~~ 164 (621)
T KOG1301|consen 87 VYFVSPTEENIDRIIQDLSK--GLYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSLGMQ 164 (621)
T ss_pred EEEeCCchHhHHHHHHHHHH--hhhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhhccc
Confidence 99999999999999999975 699999999999999999999985 4688889999999999999999999999999
Q ss_pred chhhhhcCCCcChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcC
Q 006024 166 RALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQ 245 (664)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~ 245 (664)
++|..+..++..+...+..+++||+||+++|.++|.+|.|||-.+ . +.++||++|-+++.+.+-..++...
T Consensus 165 ~~~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g--~-------aAEmvA~kL~qKLRd~l~d~k~~lf 235 (621)
T KOG1301|consen 165 NSFHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKG--G-------AAEMVARKLDQKLRDNLRDTKNNLF 235 (621)
T ss_pred ccchhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCC--C-------HHHHHHHHHHHHHHHHhHhhcccce
Confidence 999888887777777889999999999999999999999999322 2 2368888888888888764443221
Q ss_pred ----CCCCCCCeeEEEecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhc
Q 006024 246 ----NFPMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHA 321 (664)
Q Consensus 246 ----~~~~~~~~~LiIlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~ 321 (664)
.+-.-++|+|+|+||++|++||+.|.||||||+||+|+++.|+|+++.+. ++..+|.+.|+.+|+||..+.+.
T Consensus 236 t~~~~~~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~---~~~~~k~yDld~~D~fW~~n~~~ 312 (621)
T KOG1301|consen 236 TMDGGGAGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESES---KRKKKKSYDLDPNDKFWRRNKGS 312 (621)
T ss_pred eccCcccCCCCceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccc---cCCCCccccCCCccHHHHhcCCC
Confidence 11123689999999999999999999999999999999999999998643 23456889999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHhhhHhhhhc--CC---CC---CCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHH
Q 006024 322 HIADASERLHEKMTGFVSKNKAAQIQN--GS---RD---GSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIR 393 (664)
Q Consensus 322 ~~~~v~~~l~~~~~~~~~~~~~~~~~~--~~---~~---~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~ 393 (664)
.|++|++.|.+++.+|+.+. +++++ |. .. +...+...++++|++||++.++++.+++|+|||.++++.|+
T Consensus 313 pFP~VAE~Ve~eL~~Yk~~~--~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~~Ik 390 (621)
T KOG1301|consen 313 PFPEVAENVEEELESYKNEE--AEIKRKMGLSGEDEGAIDELNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLEQIK 390 (621)
T ss_pred CCchHHHHHHHHHHHHHhhH--HHHHhhcCCCcccccccccccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998754 34542 11 11 11223459999999999999999999999999999999999
Q ss_pred hhhhhHHHHHhhhhhcCCCcHHHHHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchH---HHHHHHHcCCChhHHHHHH
Q 006024 394 ETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEK---GLNLMKLAKLTADDMTAVN 470 (664)
Q Consensus 394 ~~~l~~~~~lEq~i~~g~~~~~~~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~---~~~llq~~g~~~~~~~~l~ 470 (664)
.|.|+.++++|+++.+ ....+.+++.+.+....+.+||||++++|.++.. -+...+ ++..++..|++.+.+..+.
T Consensus 391 eR~lD~ff~~E~~~~~-~~l~~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~e-t~~~s~le~~e~al~e~~~d~~Al~yvk 468 (621)
T KOG1301|consen 391 ERKLDDFFEVEKKIMS-TTLDRSLLDILEDGEAGTPEDKLRLFIIYYLSTE-TVPQSDLEAVENALTEAGCDLNALKYVK 468 (621)
T ss_pred HhhhhHHHHHhccccc-ccccHHHHHHHhcccCCChHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 9999999999999987 3334577888876567899999999999999974 444444 4567888999877777777
Q ss_pred HHHHhcCcccccc--ccC-CCCcc----------chhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCC--C
Q 006024 471 NMRLLGGALESKK--STI-GAFSL----------KFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNEL--S 535 (664)
Q Consensus 471 ~L~~lg~~~~~~~--~~~-~~~~~----------~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l--~ 535 (664)
++..+.-...... .+. ..+.. .|-+..-+|++.+. .-.| +.++||.+..++- .
T Consensus 469 r~k~~~~~~s~~~~~~~~~t~~~~~~~kl~~qg~~~vm~GVKNLlp~~-----------q~lP-vT~iveal~~~~sn~e 536 (621)
T KOG1301|consen 469 RLKEITKMSSATSAYSGTTTKIVDLFEKLYSQGSSFVMEGVKNLLPKK-----------QNLP-VTRIVEALMDPKSNPE 536 (621)
T ss_pred HHHHHhhcccccccccCCcccHHHHHHHHhhccHHHHHhhHHhcCccc-----------ccCc-HHHHHHHhhCCCCCcc
Confidence 7665432222111 000 01001 11111223333221 1223 7889999997653 3
Q ss_pred CCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCH
Q 006024 536 KDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTR 615 (664)
Q Consensus 536 ~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTy 615 (664)
.++|.|++ |+.. .|.. .....+ +.+.++.|||||||.+|
T Consensus 537 tddYl~~D-Pk~~-k~~~-----------~~~~~~----------------------------r~~f~eaIVFvVGGGNY 575 (621)
T KOG1301|consen 537 TDDYLYFD-PKLS-KGGS-----------SSLPIK----------------------------RQPFQEAIVFVVGGGNY 575 (621)
T ss_pred ccceEeec-cccc-cCCC-----------cccccc----------------------------ccchhheEEEEEcCcCe
Confidence 55788886 3321 1100 001111 12578999999999999
Q ss_pred HHHHHHHHHHhhC--CCeEEEccCcccChhHHHHHHhccCCCC
Q 006024 616 SELRVCHKLTAKL--NREVVLGSSSLDDPPQFITKLKMLTAHE 656 (664)
Q Consensus 616 sEi~~l~~l~~~~--~~~iiigsT~I~~~~~fi~~l~~l~~~~ 656 (664)
-|+..|.++.++. .++||+|+|+|+||.+|++++..|+.+-
T Consensus 576 iEYqnL~d~~krq~~~krIiYGsTeIln~~eFl~qls~Lg~~~ 618 (621)
T KOG1301|consen 576 IEYQNLVDLAKRQQTVKRIIYGSTEILNAREFLEQLSRLGLKM 618 (621)
T ss_pred eehhhHHHHHHhhcccceeEecchhcCCHHHHHHHHHHhcccc
Confidence 9999999998754 4899999999999999999999988653
No 7
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=48.13 E-value=23 Score=35.02 Aligned_cols=44 Identities=18% Similarity=0.457 Sum_probs=33.9
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006024 605 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 652 (664)
Q Consensus 605 viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~~l 652 (664)
+.|.+.||+|-..++.+.+ .|.++++.++.|++.++....++++
T Consensus 171 ~~i~v~GGI~~~nv~~l~~----~GaD~vvvgSai~~~~d~~~~~~~~ 214 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE----AGADVFVAGSAVFGAPDYKEAIDSL 214 (220)
T ss_pred ceEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCCHHHHHHHH
Confidence 5677889999977666655 5899999999999877765555443
No 8
>PF14071 YlbD_coat: Putative coat protein
Probab=40.52 E-value=29 Score=31.13 Aligned_cols=14 Identities=50% Similarity=0.949 Sum_probs=12.5
Q ss_pred EecCCCChHHHHhh
Q 006024 306 VLLEEHDPIWVELR 319 (664)
Q Consensus 306 ~~l~~~D~~~~~~R 319 (664)
++|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 47789999999999
No 9
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=38.78 E-value=36 Score=33.97 Aligned_cols=45 Identities=16% Similarity=0.289 Sum_probs=33.2
Q ss_pred eEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006024 604 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 652 (664)
Q Consensus 604 ~viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~~l 652 (664)
.+.|.+.||+|-..++.+.+ .|.++++.++.|...+++-+.+..+
T Consensus 167 ~~~I~vdGGI~~eni~~l~~----aGAd~vVvGSaIf~~~d~~~~i~~l 211 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAE----AGADMFVAGSAIFGQPDYKAVIDEM 211 (220)
T ss_pred CeeEEEECCCCHHHHHHHHH----cCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 47788999999777666654 5899999999998665555544443
No 10
>PLN02334 ribulose-phosphate 3-epimerase
Probab=37.36 E-value=33 Score=34.36 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=33.3
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006024 605 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 652 (664)
Q Consensus 605 viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~~l 652 (664)
+-|.++||+|-.-++.+.. .|.++++.++.|+..++.-+.++++
T Consensus 175 ~~I~a~GGI~~e~i~~l~~----aGad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAE----AGANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred CcEEEeCCCCHHHHHHHHH----cCCCEEEEChHHhCCCCHHHHHHHH
Confidence 3589999999887777665 4788999999999776665555443
No 11
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=36.59 E-value=38 Score=32.38 Aligned_cols=45 Identities=18% Similarity=0.125 Sum_probs=33.1
Q ss_pred eEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006024 604 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 652 (664)
Q Consensus 604 ~viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~~l 652 (664)
.+-|++.||++-..+..+.. .|.+.+..++.+....+....+..+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~----~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLA----AGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCCEEEECCCCHHHHHHHHH----cCCCEEEEehHhhcCCCHHHHHHHH
Confidence 35588999999766665554 4789999999998766666665544
No 12
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=28.98 E-value=54 Score=32.03 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.1
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 006024 605 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 651 (664)
Q Consensus 605 viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~~ 651 (664)
+-|++.||+|-..++.+.. .|.+.+++++.|.+..+..+.+..
T Consensus 161 ~~v~a~GGI~~~~i~~~~~----~Ga~gv~~gs~i~~~~d~~~~~~~ 203 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLE----AGADGVAVVSAITGAEDPEAAARA 203 (212)
T ss_pred CCEEEECCcCHHHHHHHHH----cCCCEEEEeHHhhcCCCHHHHHHH
Confidence 6789999999766655544 488899998999876555444443
No 13
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=27.73 E-value=71 Score=31.09 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=32.4
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006024 605 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 652 (664)
Q Consensus 605 viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~~l 652 (664)
+-|++.||+|-.-+ .++. +.|.+.++.++.|+++.+.-..++.+
T Consensus 166 ~~i~v~GGI~~env---~~l~-~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 166 ILIEVDGGVNDDNA---RELA-EAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred ceEEEECCcCHHHH---HHHH-HcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 55789999996554 4433 45889999999999888776666543
No 14
>PRK10039 hypothetical protein; Provisional
Probab=25.78 E-value=1.3e+02 Score=27.20 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=28.3
Q ss_pred EcCcCHHHHHHHHHHHhhCC----CeE-EEccCcccChhHHHHHHh
Q 006024 610 VGGTTRSELRVCHKLTAKLN----REV-VLGSSSLDDPPQFITKLK 650 (664)
Q Consensus 610 vGGvTysEi~~l~~l~~~~~----~~i-iigsT~I~~~~~fi~~l~ 650 (664)
=||.|--|.|+++|++...+ +.+ +...+.-++-.+.++.+.
T Consensus 80 EGGlS~VE~R~l~Ela~ga~~~~~~~v~~~~~~~pLsD~evi~~~~ 125 (127)
T PRK10039 80 EGGLSQVEERILIELAVGSTPKGYRQLYIHPQSVPLSDSAVIQIIK 125 (127)
T ss_pred CCCccHHHHHHHHHHHhhhcccccceEEEeCCCCcCCHHHHHHHHh
Confidence 39999999999999976532 234 444444566666666654
No 15
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=25.37 E-value=75 Score=30.66 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=31.3
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHh
Q 006024 605 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLK 650 (664)
Q Consensus 605 viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~ 650 (664)
+-|+.+||+|-..++.+. ..|.+.+.+++.|...++-...+.
T Consensus 153 ~pv~a~GGI~~~~~~~~~----~~G~~gva~~~~i~~~~dp~~~~~ 194 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVL----AAGADGVAVVSAIMQAADPKAAAK 194 (196)
T ss_pred CCEEEECCcCHHHHHHHH----HcCCCEEEEhHHhhCCCCHHHHHH
Confidence 448999999976666544 358999999999988766555544
No 16
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=22.99 E-value=80 Score=31.66 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=32.9
Q ss_pred eEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 006024 604 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 651 (664)
Q Consensus 604 ~viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~~ 651 (664)
.+.|-|-||||-..++.+.. .|.+++|.|+.|...++.-+.+..
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~----aGad~iVvGsaI~~a~d~~~~~~~ 216 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAAD----AGANVIVAGSSIFKAKDRKQAIEL 216 (228)
T ss_pred cCeEEECCCCCHHHHHHHHH----cCCCEEEEchHHhCCCCHHHHHHH
Confidence 36688999999987776655 488999999999876655544443
No 17
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=21.83 E-value=1.1e+02 Score=29.64 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=31.9
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhc
Q 006024 605 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKM 651 (664)
Q Consensus 605 viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~~ 651 (664)
+-|++.||+|-.-++.+. +.|.+.++.++.|++..+....++.
T Consensus 167 ~pi~v~GGI~~env~~~~----~~gad~iivgsai~~~~~~~~~~~~ 209 (211)
T cd00429 167 LLIEVDGGINLETIPLLA----EAGADVLVAGSALFGSDDYAEAIKE 209 (211)
T ss_pred eEEEEECCCCHHHHHHHH----HcCCCEEEECHHHhCCCCHHHHHHH
Confidence 567899999975544443 3578899999999988777666554
No 18
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=21.80 E-value=1.2e+02 Score=30.35 Aligned_cols=46 Identities=13% Similarity=0.274 Sum_probs=34.3
Q ss_pred ceEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006024 603 QRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 652 (664)
Q Consensus 603 ~~viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~~l 652 (664)
..+.|-|=|||+-.-++.+.+ .|.+++|+|+.|...++.-+.+..+
T Consensus 170 ~~~~IeVDGGI~~eti~~l~~----aGaDi~V~GSaiF~~~d~~~~~~~l 215 (223)
T PRK08745 170 KPIRLEIDGGVKADNIGAIAA----AGADTFVAGSAIFNAPDYAQVIAQM 215 (223)
T ss_pred CCeeEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCCHHHHHHHH
Confidence 358899999999887776655 4889999999998655554444433
No 19
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.02 E-value=1.1e+02 Score=29.84 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=29.8
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHh
Q 006024 605 IFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLK 650 (664)
Q Consensus 605 viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~ 650 (664)
+.|.+.||+|..-+..+. +.|.+.++.++.|.+.++.-+.+.
T Consensus 159 ~~i~v~GGI~~~n~~~~~----~~Ga~~v~vGsai~~~~d~~~~~~ 200 (206)
T TIGR03128 159 ARVAVAGGINLDTIPDVI----KLGPDIVIVGGAITKAADPAEAAR 200 (206)
T ss_pred CcEEEECCcCHHHHHHHH----HcCCCEEEEeehhcCCCCHHHHHH
Confidence 456779999988776543 358898888888997555444443
No 20
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=20.24 E-value=1.9e+02 Score=24.55 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=26.3
Q ss_pred CCceEEEEEEcC--cCHHHHHHHH-HHHhhC--CCeEEEccC
Q 006024 601 MGQRIFVFIVGG--TTRSELRVCH-KLTAKL--NREVVLGSS 637 (664)
Q Consensus 601 ~~~~viVfvvGG--vTysEi~~l~-~l~~~~--~~~iiigsT 637 (664)
.-+.++|.|.|| +|+.|+..+- .+.+.. +.+|++|.+
T Consensus 35 ~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 35 GAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp G-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred HhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 357899999997 7899998875 445553 578888865
Done!