Query 006024
Match_columns 664
No_of_seqs 168 out of 976
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 13:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 7E-108 2E-112 926.1 50.2 573 16-656 4-589 (594)
2 3puk_A Syntaxin-binding protei 100.0 2E-106 5E-111 914.6 42.7 565 15-656 7-584 (592)
3 3c98_A Syntaxin-binding protei 100.0 3E-105 1E-109 913.1 49.7 574 15-656 15-601 (606)
4 2xhe_A UNC18; exocytosis, exoc 100.0 2E-104 6E-109 911.6 55.4 601 17-656 3-619 (650)
5 1epu_A S-SEC1; parallel beta-s 100.0 2E-104 8E-109 904.2 50.3 575 17-654 2-590 (591)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 1.4E-93 4.9E-98 822.9 43.5 581 15-658 16-667 (671)
7 1y9j_A SEC1 family domain cont 100.0 2.4E-29 8.1E-34 233.2 10.7 133 16-151 20-159 (159)
8 3he4_B Synzip5; heterodimeric 45.5 34 0.0012 22.6 4.2 32 356-387 3-34 (46)
9 1tqx_A D-ribulose-5-phosphate 24.9 45 0.0015 32.0 3.3 42 604-649 173-214 (227)
10 1y0e_A Putative N-acetylmannos 21.9 71 0.0024 30.0 4.2 45 604-652 175-220 (223)
11 1h1y_A D-ribulose-5-phosphate 21.1 39 0.0013 32.2 2.1 41 604-648 173-213 (228)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=6.5e-108 Score=926.08 Aligned_cols=573 Identities=29% Similarity=0.567 Sum_probs=475.7
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEEecCC
Q 006024 16 KNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPT 95 (664)
Q Consensus 16 ~~l~~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt 95 (664)
-+||+++|++|+++||+++++ .++|||||+|+.+++|||++|++++|+++||++|++|++.|+|+|+++|||||+||
T Consensus 4 ~~lk~~~~~~l~~~~l~~~~~---~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt 80 (594)
T 1dn1_A 4 IGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPS 80 (594)
T ss_dssp CCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCC
T ss_pred hhHHHHHHHHHHHHHHhhccc---CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCC
Confidence 369999999999889999853 34799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcCC
Q 006024 96 KENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGD 174 (664)
Q Consensus 96 ~~~i~~i~~d~~~-~~~~y~~~~i~F~~~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~ 174 (664)
.+||++|++||++ ..++|++|||||++.+|+.+++.||+ +++.+.|+++.|+++||+|+|+|+|||++|++|..+|.+
T Consensus 81 ~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~ 159 (594)
T 1dn1_A 81 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP 159 (594)
T ss_dssp HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred HHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCC
Confidence 9999999999974 23699999999999999999999997 578999999999999999999999999999999999996
Q ss_pred CcChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcCCCC---CCC
Q 006024 175 EESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFP---MSE 251 (664)
Q Consensus 175 ~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~---~~~ 251 (664)
..+ .+....++++|++|+++|.++|.+|.|||+|+. ..|+++|+.|++.|.++...++.++ ..+
T Consensus 160 ~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~ 226 (594)
T 1dn1_A 160 HKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKA 226 (594)
T ss_dssp GGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGG
T ss_pred ccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccCccccCCCCCC
Confidence 432 234678999999999999999999999999874 2477899999999988776544432 234
Q ss_pred CeeEEEecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhccHHHHHHHHH
Q 006024 252 TCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLH 331 (664)
Q Consensus 252 ~~~LiIlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~ 331 (664)
+++|||+||++|++|||+||||||||+||+|||++|+|+++.+. .+..++|++.|+++|+||.++||+||++|++.|.
T Consensus 227 ~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~ 304 (594)
T 1dn1_A 227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVT 304 (594)
T ss_dssp GCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred CCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence 78999999999999999999999999999999999999998632 1234568899999999999999999999999999
Q ss_pred HHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcCC
Q 006024 332 EKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGD 411 (664)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g~ 411 (664)
+++++|+++++.. ..+..+++||++||++||+|+++++.+++|++||++|++.+++ .|++++++||+|++|.
T Consensus 305 ~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~ 376 (594)
T 1dn1_A 305 RSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGT 376 (594)
T ss_dssp HHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 9999999865421 1235578899999999999999999999999999999999987 8999999999999986
Q ss_pred Cc--------HHHHHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCcccccc
Q 006024 412 AG--------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKK 483 (664)
Q Consensus 412 ~~--------~~~~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~ 483 (664)
+. .+.+.++|. ++.++.+|||||+|||++++ +|+.++++.++++++|++.+++.++.||+++|+...++.
T Consensus 377 d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~ 454 (594)
T 1dn1_A 377 DAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDS 454 (594)
T ss_dssp CSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCC
T ss_pred CcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc
Confidence 42 245667776 46789999999999999997 589989999999999999999999999999997654421
Q ss_pred ccCCCCccchhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcc
Q 006024 484 STIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPA 563 (664)
Q Consensus 484 ~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~ 563 (664)
. . .|.+.+.++.+ +.++.|.+|||+|++++++|++++|+|++++|||+.++++...+
T Consensus 455 ~-------~---~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~------------ 511 (594)
T 1dn1_A 455 T-------L---RRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS------------ 511 (594)
T ss_dssp G-------G---GCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC------------------
T ss_pred c-------c---ccccccccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc------------
Confidence 1 0 11122233333 57899999999999999999999999999999999765421100
Q ss_pred cccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhC-CCeEEEccCcccCh
Q 006024 564 AHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL-NREVVLGSSSLDDP 642 (664)
Q Consensus 564 ~~s~r~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~~~-~~~iiigsT~I~~~ 642 (664)
.+..+.|+++|++.+...+ ...++++||||+||+||+|+|++|++++.. +++|+||||+|+||
T Consensus 512 -~~~~s~r~~~w~~~~~~~~---------------~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~VilG~t~il~p 575 (594)
T 1dn1_A 512 -TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTP 575 (594)
T ss_dssp ------------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECH
T ss_pred -ccccccccccccccCCccc---------------cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceEEEeeCCcCCH
Confidence 0112335578986542211 125789999999999999999999999886 58999999999999
Q ss_pred hHHHHHHhccCCCC
Q 006024 643 PQFITKLKMLTAHE 656 (664)
Q Consensus 643 ~~fi~~l~~l~~~~ 656 (664)
.+|+++|..|++++
T Consensus 576 ~~Fl~~l~~l~~~~ 589 (594)
T 1dn1_A 576 QKLLDTLKKLNKTD 589 (594)
T ss_dssp HHHHHHHTTTTSCS
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999998766
No 2
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=1.5e-106 Score=914.57 Aligned_cols=565 Identities=28% Similarity=0.488 Sum_probs=467.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEEecC
Q 006024 15 YKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQP 94 (664)
Q Consensus 15 ~~~l~~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~P 94 (664)
.-+||+++|++|+++||+++++ .++|||||+|+.+++|||++|++++|+++||++|+.|+..|+|+|+++|||||+|
T Consensus 7 ~~~lk~~~~~~l~~~~l~~v~~---~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~~~aIYfv~P 83 (592)
T 3puk_A 7 ERGLKSVVWRKIKTAVFDDCRK---EGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISP 83 (592)
T ss_dssp CCCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTTSCEEEEECS
T ss_pred ChhHHHHHHHHHHHHHHHhhcc---cCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCCCcEEEEEeC
Confidence 3579999999999889999963 3579999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcC
Q 006024 95 TKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFG 173 (664)
Q Consensus 95 t~~~i~~i~~d~~~-~~~~y~~~~i~F~~~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~ 173 (664)
|.+||++|++||++ ..++|++|||||++.+|+.+++.| + +++.+.|+++.|+++||+|+|+++|||++|++|..+|.
T Consensus 84 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~lle~L-~-~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~ 161 (592)
T 3puk_A 84 TPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKI-K-ASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYS 161 (592)
T ss_dssp CHHHHHHHHHHHTGGGCCCBSCEEEEESSCCCHHHHHHH-H-HSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSC
T ss_pred CHHHHHHHHHHHhccccccCCeEEEEECCCCCHHHHHHH-H-hhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcC
Confidence 99999999999975 135899999999999999999999 4 57899999999999999999999999999999999999
Q ss_pred CCcC-hhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHH-hhhhcCCCCC-C
Q 006024 174 DEES-SQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMK-YKQTIQNFPM-S 250 (664)
Q Consensus 174 ~~~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~-~~~~~~~~~~-~ 250 (664)
++.+ ..+....++++|++|+++|.++|.+|.|||+|+... -|+++|..+++.|.+ +....+.++. .
T Consensus 162 ~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~-----------~a~~lA~~l~~~l~~~~~~~~~~~~~~~ 230 (592)
T 3puk_A 162 PDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLD-----------NASKLAQLVEKKLEDYYKIDEKGLIKGK 230 (592)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSS-----------HHHHHHHHHHHHHHHSSSSCSSCSCCSC
T ss_pred CcccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchH-----------HHHHHHHHHHHHHHHHHhccCCCcCCCC
Confidence 7543 234578999999999999999999999999987421 256789988888877 4333333322 4
Q ss_pred CCeeEEEecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhccHHHHHHHH
Q 006024 251 ETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERL 330 (664)
Q Consensus 251 ~~~~LiIlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l 330 (664)
++++|||+||++|++|||+||||||||+||+|||++|+|+++. .| ++|++.|+++|+||.++||+||++|++.|
T Consensus 231 ~~~~LiIlDR~~D~vtPLlh~~TYqalv~dll~i~~~~v~~~~---~g---~~k~~~L~~~D~~~~~~r~~~f~~v~~~l 304 (592)
T 3puk_A 231 TQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKT---DG---KEKEAVLEEDDDLWVRVRHRHIAVVLEEI 304 (592)
T ss_dssp CSEEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCGGGEEECCS---SS---SCCEEECSTTSSSTTTTTTSBHHHHHTTS
T ss_pred CCceEEEecCCccccccccccccHHHHHHHHhcccCCEEEecC---CC---ceeEEecCCCCHHHHHHhccCHHHHHHHH
Confidence 5899999999999999999999999999999999999999874 12 46789999999999999999999999999
Q ss_pred HHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcC
Q 006024 331 HEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFG 410 (664)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g 410 (664)
.+++++|+++++. ..+..+++||++||++||+|+++++.+++|++||++|++.+++ +|++++++||+|++|
T Consensus 305 ~~~~~~~~~~~~~--------~~~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g 375 (592)
T 3puk_A 305 PKLMKEISSTKKA--------TEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALG 375 (592)
T ss_dssp CSCSTTTTTCC---------------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhc--------ccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 9999999876532 1235688999999999999999999999999999999999987 899999999999998
Q ss_pred CCcH--------HHHHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccc
Q 006024 411 DAGF--------KDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESK 482 (664)
Q Consensus 411 ~~~~--------~~~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~ 482 (664)
.+.. +.++++|. ++.++.+|||||+|||++++ +|+++++++++++++|++. +..++.||+.+|+...++
T Consensus 376 ~d~~~~~~k~~~~~i~~~L~-~~~~~~~dkLRL~lLy~L~~-~g~~~~~~~~Ll~~~g~~~-~~~~i~nl~~lg~~~~~~ 452 (592)
T 3puk_A 376 TDAEGQRVKDSMLVLLPVLL-NKNHDNCDKIRAVLLYIFGI-NGTTEENLDRLIHNVKIED-DSDMIRNWSHLGVPIVPP 452 (592)
T ss_dssp SCTTCCSCSCCHHHHTTTTT-SCSCCHHHHHHHHHHHHHHS-CBCCHHHHHHHHHHTCCCT-TTHHHHGGGGGTCCSSSS
T ss_pred CCccchhhHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCh-HHHHHHHHHHhCCccccC
Confidence 6421 23445555 46789999999999999998 6999989999999999986 899999999999765442
Q ss_pred cccCCCCccchhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCc
Q 006024 483 KSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVP 562 (664)
Q Consensus 483 ~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~ 562 (664)
. . ..+..++. .+.++.|.+|||+|++++++|++++|+|+++.|||+.+++....+ .
T Consensus 453 ~-----~--------~~~~~rk~-~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~~---------~- 508 (592)
T 3puk_A 453 S-----Q--------QAKPLRKD-RSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNG---------S- 508 (592)
T ss_dssp B-----S--------SCCCCCCC-CCCCCGGGSCCCCCTTHHHHHHHHTCCCCTTTSCC---------------------
T ss_pred c-----c--------ccCccccc-CCCCcceeeeccchHHHHHHHHHHhCCCCcccCCccCCCCCCccC---------C-
Confidence 1 0 11122233 367899999999999999999999999999999999765421000 0
Q ss_pred ccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhCC-CeEEEccCcccC
Q 006024 563 AAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLN-REVVLGSSSLDD 641 (664)
Q Consensus 563 ~~~s~r~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~~~~-~~iiigsT~I~~ 641 (664)
+..+.|+++| +.+...+ ...++++||||+||+||+|+|++|++++..+ ++|+||||+|+|
T Consensus 509 ---~~~s~r~~~w-~~~~~~~---------------~~~~~riiVFivGGvTysE~r~~~els~~~~~~~vilG~T~i~n 569 (592)
T 3puk_A 509 ---GAVSARQKPR-TNYLELD---------------RKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILT 569 (592)
T ss_dssp ------------C-CCCCCCC---------------CSCCSEEEEEEETCEEHHHHHHHHHHHHHCCSSEEEEEESSEEC
T ss_pred ---cccccccccc-ccCcccc---------------ccCCCeEEEEEeCCcCHHHHHHHHHHHhhcCCceEEEeeCCcCC
Confidence 0113455788 4332110 1357999999999999999999999998875 899999999999
Q ss_pred hhHHHHHHhccCCCC
Q 006024 642 PPQFITKLKMLTAHE 656 (664)
Q Consensus 642 ~~~fi~~l~~l~~~~ 656 (664)
|++|+++|..|++++
T Consensus 570 p~~fl~~l~~l~~~~ 584 (592)
T 3puk_A 570 PRKLLDDIKMLNKSK 584 (592)
T ss_dssp HHHHHHHHSSTTSCC
T ss_pred HHHHHHHHHHhCCcc
Confidence 999999999997543
No 3
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=3.5e-105 Score=913.10 Aligned_cols=574 Identities=29% Similarity=0.552 Sum_probs=473.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEEecC
Q 006024 15 YKNFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQP 94 (664)
Q Consensus 15 ~~~l~~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~P 94 (664)
+.+||++++++++++|+++|++ +++|||||+|+.|++|||++|++++|+++||++|+.|++.|+|+|+++|||||+|
T Consensus 15 p~~l~~~~~~~~l~~~i~~v~~---~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~~~aIyfv~P 91 (606)
T 3c98_A 15 PIGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITP 91 (606)
T ss_dssp -CCHHHHHHHHHHHHTHHHHCB---TTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTTSCEEEEECC
T ss_pred cHHHHHHHHHHHHHHHHhccCC---CCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcC
Confidence 4689999999999999999973 3469999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcC
Q 006024 95 TKENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFG 173 (664)
Q Consensus 95 t~~~i~~i~~d~~~-~~~~y~~~~i~F~~~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~ 173 (664)
|.+||++|++||++ ..++|++|||||++.+|+.+++.||+ .+..+.|++|.|+++||+|+|+|+|||++|++|..+|.
T Consensus 92 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~~le~la~-~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~~ 170 (606)
T 3c98_A 92 SEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYS 170 (606)
T ss_dssp CHHHHHHHHHTTTSGGGCCBSCEEEEESSCCCHHHHHHHHT-SGGGGTEEEEEECCCCSEECSSSEEECCCTTHHHHHHC
T ss_pred CHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHh-cCcccccCeEEEEecchhhcCCcEEEecCCchHHHhcC
Confidence 99999999999974 13589999999999999999999997 56788999999999999999999999999999999998
Q ss_pred CCcChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcCCCC---CC
Q 006024 174 DEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFP---MS 250 (664)
Q Consensus 174 ~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~---~~ 250 (664)
+... .+....++++|++|+++|.++|.+|.|||+|++ ..|+.+|+.+++.++.+.++++.++ ..
T Consensus 171 ~~~~-~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~------------~~~~~la~~~~~~l~~~~~~~~~~~~~~~~ 237 (606)
T 3c98_A 171 PHKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDK 237 (606)
T ss_dssp GGGT-TSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------HHHHHHHHHHHHHHHHHHHHCTTTTCSTTT
T ss_pred Cccc-ccchHHHHHHHHHHHHHHHHcCCCCeEEEecCc------------hHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Confidence 5431 223678999999999999999999999999875 2467789999999988877665442 34
Q ss_pred CCeeEEEecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhccHHHHHHHH
Q 006024 251 ETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERL 330 (664)
Q Consensus 251 ~~~~LiIlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l 330 (664)
++++|||+||++|++|||+||||||||+||+|||++|+|+++.+. .+..+.+++.|+++|+||.++||+||++|++.|
T Consensus 238 ~~~~LlIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~l 315 (606)
T 3c98_A 238 ARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEV 315 (606)
T ss_dssp TSCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEES--SSSEEEEEEECSTTCHHHHHHTTSBHHHHHHHH
T ss_pred CCceEEEeeccccccchhcccccHHHHHHHHhCccCCeEEEecCC--CCCccceEeecCCCchhHHHHhccCHHHHHHHH
Confidence 579999999999999999999999999999999999999998632 223456889999999999999999999999999
Q ss_pred HHHHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcC
Q 006024 331 HEKMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFG 410 (664)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g 410 (664)
.+++++|+++++. ..++..|++||++||++||+|+++++.+++|++|+++|++.++ ++|++++++||+|++|
T Consensus 316 ~~~~~~~~~~~~~-------~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~~ 387 (606)
T 3c98_A 316 TRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMG 387 (606)
T ss_dssp HHHHHHHHHHTTC--------------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh-------hcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 9999999876532 1223457889999999999999999999999999999999995 6899999999999988
Q ss_pred CCc--------HHHHHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccc
Q 006024 411 DAG--------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESK 482 (664)
Q Consensus 411 ~~~--------~~~~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~ 482 (664)
.+. .+.++++|. +..++.+|||||+|||++++ +|++++++.++++..|++..+..++.+|+.+|+...+.
T Consensus 388 ~d~~~~~~~~~~~~i~~ll~-~~~~~~~dkLRL~lLy~l~~-~g~~~~~l~~~~~~~~~~~~~~~~i~~l~~lg~~~~~~ 465 (606)
T 3c98_A 388 TDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTD 465 (606)
T ss_dssp BCTTSCBCSCTHHHHHHHHT-CTTSCHHHHHHHHHHHHHHT-TSBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCC
T ss_pred CCcchhhHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccc
Confidence 542 246777886 47889999999999999998 58998889999999999999999999999999875543
Q ss_pred cccCCCCccchhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCc
Q 006024 483 KSTIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVP 562 (664)
Q Consensus 483 ~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~ 562 (664)
... ... .....+. .+.+.+|+||||+|++++++|.+++++++++.||++..+.....+
T Consensus 466 ~~~-~~~---------~~~~~~~-~~~~~~~~~s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~~~----------- 523 (606)
T 3c98_A 466 STL-RRR---------SKPERKE-RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS----------- 523 (606)
T ss_dssp CTT-TCC---------CCCCCCC-CCCCCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC-----------------
T ss_pred ccc-ccc---------cchhhcc-CCcccccceecchHHHHHHHHHHHhCCCCcccCcccCCCCccccc-----------
Confidence 210 000 1111111 356778999999999999999999999999999999754322111
Q ss_pred ccccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhC-CCeEEEccCcccC
Q 006024 563 AAHSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKL-NREVVLGSSSLDD 641 (664)
Q Consensus 563 ~~~s~r~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~~~-~~~iiigsT~I~~ 641 (664)
....+.+++.|.++.... ....++++|||||||+||+|+|++|+++++. +++|+||||+|+|
T Consensus 524 --~~~~~~~~~~~~~~~~~~---------------~~~~~~~iIVFvvGGvTy~E~~~l~~ls~~~~~~~viiGsT~Iln 586 (606)
T 3c98_A 524 --TTAVSARYGHWHKNKAPG---------------EYRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILT 586 (606)
T ss_dssp -------------------------------------CCCSEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEEC
T ss_pred --ccccccccCCccccCCCC---------------CCCCCCEEEEEEECCcCHHHHHHHHHHHHHcCCcEEEEEeCCeeC
Confidence 011122335666543221 1135789999999999999999999998765 5799999999999
Q ss_pred hhHHHHHHhccCCCC
Q 006024 642 PPQFITKLKMLTAHE 656 (664)
Q Consensus 642 ~~~fi~~l~~l~~~~ 656 (664)
|++||++|..|++++
T Consensus 587 ~~~fl~~L~~L~k~~ 601 (606)
T 3c98_A 587 PQKLLDTLKKLNKTD 601 (606)
T ss_dssp HHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999999765
No 4
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=1.6e-104 Score=911.56 Aligned_cols=601 Identities=23% Similarity=0.447 Sum_probs=472.1
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEEecCCH
Q 006024 17 NFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTK 96 (664)
Q Consensus 17 ~l~~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~ 96 (664)
+||+.+|++|++++| +|++ .++|||||+|+.++++||++|++++|+++||++|+.|+..|+|+|+++|||||+|+.
T Consensus 3 ~l~~~~r~~ll~~~l-~v~~---~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIyfv~Pt~ 78 (650)
T 2xhe_A 3 SLKSAVKTVLTNSLR-SVAD---GGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTE 78 (650)
T ss_dssp CHHHHHHHHHHHHHT-TCCC---CSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTTSEEEEEECSCH
T ss_pred cHHHHHHHHHHHHHh-cccc---CCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCCCCEEEEEcCCH
Confidence 589999999998899 8853 236999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcCCCc
Q 006024 97 ENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDEE 176 (664)
Q Consensus 97 ~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~~ 176 (664)
+||++|++||+...|+|+.|||+|++.+|+.+++.+|+. ++.+.|++|.|+++||+|+|+|+|||++|++|..+|.+..
T Consensus 79 ~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~ 157 (650)
T 2xhe_A 79 ENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASA-KAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRS 157 (650)
T ss_dssp HHHHHHHHHHHSSSCSBSCEEEEESSCCCHHHHHHHHHS-GGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTG
T ss_pred HHHHHHHHHHhhcCCCcceEEEEeCCCCCHHHHHHHHhc-chhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCcc
Confidence 999999999986447999999999999999999999974 5888998999999999999999999999999999996422
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcCCC---CCCCCe
Q 006024 177 SSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNF---PMSETC 253 (664)
Q Consensus 177 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~---~~~~~~ 253 (664)
....++++|++|+++|.++|.+|.|||+|+++ ..|+++|..++..|.+ ..+...+ +..+++
T Consensus 158 ----~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~-----------~~a~~la~~l~~~l~~-~~~~~~~~~~~~~~~~ 221 (650)
T 2xhe_A 158 ----SSYNIDHLVRRLSTLCTTMNVAPIVRYSSTST-----------PGTERMAMQLQKEIDM-SVSQGLINAREGKLKS 221 (650)
T ss_dssp ----GGCCHHHHHHHHHHHHHHHTCCCEEEECTTCC-----------HHHHHHHHHHHHHHHH-HHTTTSCCCCCCSSCC
T ss_pred ----chHHHHHHHHHHHHHHHHcCCCCEEEecCCCc-----------hHHHHHHHHHHHHHHh-hccCCcccCCCCCCCC
Confidence 25679999999999999999999999998741 2577888888877765 2222221 334589
Q ss_pred eEEEecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhccHHHHHHHHHHH
Q 006024 254 ELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHEK 333 (664)
Q Consensus 254 ~LiIlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~ 333 (664)
+|||+||++|++|||+||||||||+||+|||++|+|+++.+.. ++..++|++.|+++|+||+++||+||++|++.|.++
T Consensus 222 ~LiIlDR~~D~vTPLlhq~TYqaLi~dll~I~~n~v~~~~~~~-~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~ 300 (650)
T 2xhe_A 222 QFLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYSTVDA-GGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSS 300 (650)
T ss_dssp EEEEECGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECCS-SCCSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHH
T ss_pred EEEEEcCCcchhhhccccchHHHHHHHHhcCcCCEEEEEecCC-CCCccceEEeCCCCCHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986432 234567889999999999999999999999999999
Q ss_pred HHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcCCCc
Q 006024 334 MTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAG 413 (664)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g~~~ 413 (664)
+++|+++++..+. .+...++..+++||++||++||+|+++++.+++|++||++|++.+++ +|.+++++||+|++|.+.
T Consensus 301 ~~~~~~~~~~~~~-~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d~ 378 (650)
T 2xhe_A 301 FDEFCVSARRLQG-LRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEEQ 378 (650)
T ss_dssp HHHHHHHHHHTTT-CCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBCS
T ss_pred HHHHHHHhhhhcc-ccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcc
Confidence 9999987753210 00011245689999999999999999999999999999999999999 999999999999998642
Q ss_pred --------HHHHHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCcccccccc
Q 006024 414 --------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKST 485 (664)
Q Consensus 414 --------~~~~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~ 485 (664)
.+.+.++|. +...+.+|||||+|||++++ +|+++.+++++++.||++.+++.++.||+++|+...+...+
T Consensus 379 ~g~~~~~~~~~i~~ll~-~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~~~ 456 (650)
T 2xhe_A 379 DGNKVRDFIGEVASVVV-DRRVSTEDKLRCLMLCVLAK-NGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADRRG 456 (650)
T ss_dssp SCCBCCCHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCGGGGHHHHGGGGGTCCCBGGGCC
T ss_pred cccchhHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccccc
Confidence 245677776 36789999999999999998 48998889999999999999999999999999886653110
Q ss_pred CCCCccchhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCcccc
Q 006024 486 IGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAAH 565 (664)
Q Consensus 486 ~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~ 565 (664)
...| ...+++ ...+|+||||+|+++||||.+++++++++.||++.++.+...+.+...+....++..
T Consensus 457 ~~~~----------~~~rk~---~~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (650)
T 2xhe_A 457 RKPK----------TMKRIE---RDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGP 523 (650)
T ss_dssp CCCC----------CCCCCC---CCCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC-------------
T ss_pred cccc----------cccccc---cCCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCccccccccccccccccccc
Confidence 0111 111112 223899999999999999999999999999999975432211110000000000001
Q ss_pred cccCCCCCCccCCCCCCCC----CCccccccccc-cccccCCceEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCccc
Q 006024 566 SMRSRRTPTWARPRSSDDG----YSSDSVLKHAS-SDFKKMGQRIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLD 640 (664)
Q Consensus 566 s~r~~~~~~~~~~~~~~~~----~~~~s~~~~~~-~~~~~~~~~viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~ 640 (664)
..++.+.++|++...+... .++.+..+... +.....++++||||||||||+|+|++|+|+++.|++|+||||+|+
T Consensus 524 ~~~s~~~~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~~~~~viigsT~Il 603 (650)
T 2xhe_A 524 ATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSSGYEVYIGAHNIA 603 (650)
T ss_dssp --------------------------------------CCCSCEEEEEEEEEECHHHHHHHHHHHTTSSSEEEEEEEEEC
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhcCCCEEEEeeCCcC
Confidence 1123344789865432211 01111111100 001135788999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhccCCCC
Q 006024 641 DPPQFITKLKMLTAHE 656 (664)
Q Consensus 641 ~~~~fi~~l~~l~~~~ 656 (664)
||++||+++..|++++
T Consensus 604 n~~~fl~~l~~l~~~~ 619 (650)
T 2xhe_A 604 TPAEFVELVSLLDKAD 619 (650)
T ss_dssp CHHHHHHHHHTTTC--
T ss_pred CHHHHHHHHHHcCCCc
Confidence 9999999999998765
No 5
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=2.4e-104 Score=904.23 Aligned_cols=575 Identities=29% Similarity=0.527 Sum_probs=468.9
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEEecCCH
Q 006024 17 NFKQITRERLLYEMLRSAKTGKSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYFIQPTK 96 (664)
Q Consensus 17 ~l~~~~~~~l~~~~L~~v~~g~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~ 96 (664)
+|++++|++++++|++.+++ .++|||||+|+.++++||++|++++|+++||++|+.|+..|+|+|+++|||||+|+.
T Consensus 2 ~l~~~~~~~~~~~i~~~~~~---~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIy~v~Pt~ 78 (591)
T 1epu_A 2 ALKTAVHEKIMNDVVLAVKK---NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTE 78 (591)
T ss_dssp CHHHHHHHHHHHHTHHHHCS---SSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCCH
T ss_pred ChHHHHHHHHHHHHHHhhcc---CCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCCCCeEEEecCCH
Confidence 58999999999999999863 246999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhCCCcccccceeEEEecceeeccCCceeeCCcchhhhhcCCC
Q 006024 97 ENVVAFLSDMSG-KSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAVDSQGFVTDDERALEELFGDE 175 (664)
Q Consensus 97 ~~i~~i~~d~~~-~~~~y~~~~i~F~~~~p~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~ 175 (664)
+||++|++|+++ ..|+|++|||+|++.+|+.+++.||+. ++.+.|+++.|+++||+|+|+|+|||++|++|..+|.+.
T Consensus 79 ~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~ 157 (591)
T 1epu_A 79 ESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKS-TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPS 157 (591)
T ss_dssp HHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHS-TTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGG
T ss_pred HHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHhC-chHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCCc
Confidence 999999999975 248999999999999999999999974 678889899999999999999999999999999999863
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHHHHHhhhhcCCCCC---CCC
Q 006024 176 ESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNCLMKYKQTIQNFPM---SET 252 (664)
Q Consensus 176 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~---~~~ 252 (664)
. ..+....++++|++|+++|.++|.+|.|||+|++ ..|+++|+.++++|.++.++.+.|+. .++
T Consensus 158 ~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~------------~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (591)
T 1epu_A 158 R-AQGGIPNKERCAEQIATLCATLGEYPSVRYRSDF------------DENASFAQLVQQKLDAYRADDPTMGEGPQKDR 224 (591)
T ss_dssp G-STTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------THHHHHHHHHHHHHHHHHHTCTTTTCHHHHTS
T ss_pred c-hhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCC------------cHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 1 1223688999999999999999999999999884 25788999999988888766555533 357
Q ss_pred eeEEEecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCCCCcceEEecCCCChHHHHhhhccHHHHHHHHHH
Q 006024 253 CELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDGPPEKKEVLLEEHDPIWVELRHAHIADASERLHE 332 (664)
Q Consensus 253 ~~LiIlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~ 332 (664)
++|||+||++|++|||+||||||||+||+|||++|+|+++.+ .++..++|++.|+++|+||+++||+||++|++.|.+
T Consensus 225 ~~LiIlDR~~D~vTPLlhq~TYqali~dll~I~~n~v~~~~~--~~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~ 302 (591)
T 1epu_A 225 SQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNT--GGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTK 302 (591)
T ss_dssp CEEEEEEGGGCSSGGGSCCCBHHHHHHHHSCCBTTEECC-------------CEECCGGGSSHHHHTTSBHHHHHHHHHH
T ss_pred ceEEEECCCccchhhhhhhhhHHHHHHHHhCcCCCEEEEEec--CCCCccceEEeCCCCChHHHHHhccCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999753 223345688999999999999999999999999999
Q ss_pred HHHHHHHhhhHhhhhcCCCCCCCCCHHHHHHHHHhccchHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcCCC
Q 006024 333 KMTGFVSKNKAAQIQNGSRDGSNLSTRDLQKLVQALPQYSEQIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDA 412 (664)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g~~ 412 (664)
++++|+++++..+ .++..+++||++||++||+|+++++.+++|++||++|++.+++ +|++++++||+|++|.+
T Consensus 303 ~~~~~~~~~~~~~------~~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d 375 (591)
T 1epu_A 303 KLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTD 375 (591)
T ss_dssp HHHHHHHHTC--------------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBC
T ss_pred HHHHHHHhccccc------cccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCC
Confidence 9999998754211 0134678999999999999999999999999999999999999 99999999999999864
Q ss_pred c--------HHHHHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchHHHHHHHHcCCChhHHHHHHHHHHhcCccccccc
Q 006024 413 G--------FKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEKGLNLMKLAKLTADDMTAVNNMRLLGGALESKKS 484 (664)
Q Consensus 413 ~--------~~~~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~ 484 (664)
. .+.+.++|. +...+.+|||||+|||++++ +|+++++++++++.||++.+++.++.+|+++|+...+...
T Consensus 376 ~~g~~~k~~~~~i~~~l~-~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~ 453 (591)
T 1epu_A 376 ADGEKIRDHMRNIVPILL-DQKISAYDKIRIILLYIIHK-GGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGG 453 (591)
T ss_dssp TTSCBCCCCHHHHHHHHT-CTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCTT
T ss_pred ccccccchHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcCCccccCCc
Confidence 2 135777775 36789999999999999998 4899888999999999998999999999999987655321
Q ss_pred cCCCCccchhhhhhhhhcccCCCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCCCCCCCCCcCCCCccc
Q 006024 485 TIGAFSLKFDIHKKKRAARKDRSGGEETWQLSRFYPMIEELVEKLGKNELSKDDYPCMNDPSPTFHGTTPSALTNEVPAA 564 (664)
Q Consensus 485 ~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~ 564 (664)
+...|...+ .+. ++. .+++.+|+||||+|+++++||.+++++++++.|||++++.+.. + .+
T Consensus 454 ~~~~~~~~~--~~~----~~~-~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~-~---------~~-- 514 (591)
T 1epu_A 454 RRKIPQPYH--THN----RKE-RQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRP-S---------CQ-- 514 (591)
T ss_dssp SCCCCCTTS--GGG----SCC-CCSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC------------------
T ss_pred ccccccccc--ccc----ccc-CCCCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCCcc-c---------cC--
Confidence 111121100 000 111 3577889999999999999999999999999999997543210 0 00
Q ss_pred ccccCCCCCCccCCCCCCCCCCccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHh--hCCCeEEEccCcccCh
Q 006024 565 HSMRSRRTPTWARPRSSDDGYSSDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTA--KLNREVVLGSSSLDDP 642 (664)
Q Consensus 565 ~s~r~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~--~~~~~iiigsT~I~~~ 642 (664)
..++.++++|++..+... ...++++|||||||+||+|+|++|++++ ..|++|+||||+|+||
T Consensus 515 -~~~s~~~~~~~~~~~~~~---------------~~~~~~viVF~vGG~Ty~E~~~l~~l~~~~~~~~~viigsT~i~n~ 578 (591)
T 1epu_A 515 -QPVSVRYGHWHKDKGQAS---------------YKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTP 578 (591)
T ss_dssp -----------------------------------CCCCEEEEEEETCBCHHHHHHHHHHHTSSCSSCEEEEEESSBCCH
T ss_pred -CccccccCcccCCCCccc---------------cCCCCeEEEEEECCCCHHHHHHHHHHHhhccCCCeEEEecCCcCCH
Confidence 112233467876432110 1235679999999999999999999998 5789999999999999
Q ss_pred hHHHHHHhccCC
Q 006024 643 PQFITKLKMLTA 654 (664)
Q Consensus 643 ~~fi~~l~~l~~ 654 (664)
++|+++|..|++
T Consensus 579 ~~fl~~l~~l~~ 590 (591)
T 1epu_A 579 EGLLRDLRKISN 590 (591)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=1.4e-93 Score=822.87 Aligned_cols=581 Identities=20% Similarity=0.317 Sum_probs=438.2
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCC-----C----------CCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccC
Q 006024 15 YKNFKQITRERLLYEMLRSAKTG-----K----------SKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRR 79 (664)
Q Consensus 15 ~~~l~~~~~~~l~~~~L~~v~~g-----~----------~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~ 79 (664)
..+||+.|++.|+ .||....++ . ..++|||||+|+.+++|||++|++++|+++||++|+.|++.
T Consensus 16 ~~~lr~~q~~~l~-~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~~ 94 (671)
T 1mqs_A 16 DISLRDMQISAIL-KMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQD 94 (671)
T ss_dssp CCCHHHHHHHHHH-HHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSC
T ss_pred cccHHHHHHHHHH-HHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccCC
Confidence 3679999999999 899877520 1 14679999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhC---CCcccccceeEEEecceeecc
Q 006024 80 RQPLPSMEAIYFIQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKKD---STVLPRIGALREMNLEYFAVD 156 (664)
Q Consensus 80 r~~~~~~~aIy~i~Pt~~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~le~la~~---~~~~~~i~~i~e~~ldfipld 156 (664)
|+|+|+++|||||+|+.+||++|++||++ |+|++|||+|++.+|+.+++.||+. .++.+.|++|.|+++||+|+|
T Consensus 95 r~~~~~~~aIYfv~Pt~~ni~~i~~d~~~--~~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfiple 172 (671)
T 1mqs_A 95 RSPLPDVPAIYFVSPTKENIDIIVNDLKS--DKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTE 172 (671)
T ss_dssp CCCEEEEEEEEEECSCHHHHHHHHHHHHH--TCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECS
T ss_pred CCCCCCceEEEEeCCCHHHHHHHHHHhhh--cccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeecc
Confidence 99999999999999999999999999975 7999999999999999999999873 678899999999999999999
Q ss_pred CCceeeCCcchhhhhcCCCcChhhHHHHHHHHHHHHHHHHHHhCCccEEEEccCCccchhhhhcchhhhHHHHHHHHHHH
Q 006024 157 SQGFVTDDERALEELFGDEESSQKADACLNVMATRIATVFASLREFPLVRYRAAKSLDAMTITTFRDLVPTKLAAGVWNC 236 (664)
Q Consensus 157 ~dlfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~ 236 (664)
+|+|||++|++|..+|.+..|....+..++++|++|+++|.++|.+|.|||..+. .|+++|+.+...
T Consensus 173 ~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~-------------~a~~va~~L~~~ 239 (671)
T 1mqs_A 173 PELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGG-------------PAEIIAEKLGTK 239 (671)
T ss_dssp TTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSS-------------HHHHHHHHHHHH
T ss_pred CCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCC-------------hHHHHHHHHHHH
Confidence 9999999999999999977655555688999999999999999999999985442 245566666555
Q ss_pred HHHhhhhc--CCC------CCCCCeeEEEecCCCCccchhhhhhhhhHHHhhhcccCCCeEEEeecCCCCC-------CC
Q 006024 237 LMKYKQTI--QNF------PMSETCELLILDRSVDQIAPIIHEWTYDAICHDLLNLEGNKYVHEVPSKTDG-------PP 301 (664)
Q Consensus 237 l~~~~~~~--~~~------~~~~~~~LiIlDR~~D~iTPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~-------~~ 301 (664)
+..+.... ..| +...+++|||+||++|++|||+||||||||+||+|||++|+|+++.+...++ ..
T Consensus 240 l~~~~~~~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~ 319 (671)
T 1mqs_A 240 LRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPL 319 (671)
T ss_dssp HHHHHHTTCC------------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------
T ss_pred HHHHHhhccccccccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCccccccccccc
Confidence 55432221 123 1235789999999999999999999999999999999999999975322110 13
Q ss_pred cceEEecCCCChHHHHhhhccHHHHHHHHHHHHHHHHHhhhHhhhhc--CCC------CCCCCCHHHHHHHHHhccchHH
Q 006024 302 EKKEVLLEEHDPIWVELRHAHIADASERLHEKMTGFVSKNKAAQIQN--GSR------DGSNLSTRDLQKLVQALPQYSE 373 (664)
Q Consensus 302 ~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~--~~~------~~~~~s~~~~~~~v~~lp~~~~ 373 (664)
++|++.|+++|+||.++||+||++|++.|.+++++|+++++. +++ +.. ++...+++||++||++||+|++
T Consensus 320 ~~k~~~L~~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~ 397 (671)
T 1mqs_A 320 ATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAAE--ITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTA 397 (671)
T ss_dssp CCEEECCCSSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHH--HHHHC--------------------CCCCSCHHHHH
T ss_pred cceEEecCCCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH--HhcccCccCcccccccccccHHHHHHHHHHhHHHHH
Confidence 458899999999999999999999999999999999987642 222 100 1224579999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhhhcCCCcHHHHHHHhhhcCCCCchhHHHHHHHHHHhCCCCCCchH--
Q 006024 374 QIDKLSLHVEIAGKINRIIRETGLRELGQLEQDLVFGDAGFKDVIKFLTAKEDITRENKLRLLMIVASIYPEKFEGEK-- 451 (664)
Q Consensus 374 ~~~~l~~H~~i~~~i~~~i~~~~l~~~~~lEq~i~~g~~~~~~~~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~-- 451 (664)
+++.+++|++||++|++.+++++|++++++||+|+ |....+.++++|.+....+.+|||||+|||++++++|+++.+
T Consensus 398 ~~~~l~~H~~ia~~l~~~i~~~~l~~~~e~EQ~l~-~~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~~ 476 (671)
T 1mqs_A 398 KKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPG-STKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQ 476 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHTSCCS-SHHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh-cCchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999997 443445788888742235999999999999999832888766
Q ss_pred -HHHHHHHcCCChhHHHHHHHHHHhcCcc---c--cc---cc-c---CCC-CccchhhhhhhhhcccCCC----CCCccc
Q 006024 452 -GLNLMKLAKLTADDMTAVNNMRLLGGAL---E--SK---KS-T---IGA-FSLKFDIHKKKRAARKDRS----GGEETW 513 (664)
Q Consensus 452 -~~~llq~~g~~~~~~~~l~~L~~lg~~~---~--~~---~~-~---~~~-~~~~f~~~k~~~~~~~~~~----~~~~~y 513 (664)
+++.++.+|++...+..+.++..++... . .. ++ . .++ |+..+. +-..+.+..... +..+-|
T Consensus 477 ~l~~~l~~~G~~~~~~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~~~-r~~~~~~~~g~~~~~~~v~n~~ 555 (671)
T 1mqs_A 477 NVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIY-GLTEGKLQGGVGSLISGIKKLL 555 (671)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHHHHHHSCCCCC------------------C-HHHHHTTTSSCSSSHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcccccccccccccccccccccccccccccHH-HHHHHHhccchhhHHHhHHhhC
Confidence 4556688999755555555555443211 0 00 00 0 011 222111 000111110000 001111
Q ss_pred ccccccHHHHHHHHHHhcC-----C--CCCCCCCcccCCCCCCCCCCCCCcCCCCcccccccCCCCCCccCCCCCCCCCC
Q 006024 514 QLSRFYPMIEELVEKLGKN-----E--LSKDDYPCMNDPSPTFHGTTPSALTNEVPAAHSMRSRRTPTWARPRSSDDGYS 586 (664)
Q Consensus 514 ~~s~y~Pli~~lve~~~~~-----~--l~~~~~p~i~~~~~~~~g~~~~~~~~~~~~~~s~r~~~~~~~~~~~~~~~~~~ 586 (664)
+ ..+.|.+++++|.++++ + ++.++|||++. ... .|. .+....
T Consensus 556 P-~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~p-~~~-~~~------------~~~~~~---------------- 604 (671)
T 1mqs_A 556 P-EKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDP-KIT-RGS------------HTRKPK---------------- 604 (671)
T ss_dssp C-CCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECT-TSS-SCS------------SSCCCC----------------
T ss_pred C-CcccchHHHHHHHHHhccccccccCCCccCceeeCC-CCc-CCC------------CCCCcc----------------
Confidence 1 34556799999999998 3 56789999863 210 000 000000
Q ss_pred ccccccccccccccCCceEEEEEEcCcCHHHHHHHHHHHhh---CCCeEEEccCcccChhHHHHHHhccCCCCCC
Q 006024 587 SDSVLKHASSDFKKMGQRIFVFIVGGTTRSELRVCHKLTAK---LNREVVLGSSSLDDPPQFITKLKMLTAHELS 658 (664)
Q Consensus 587 ~~s~~~~~~~~~~~~~~~viVfvvGGvTysEi~~l~~l~~~---~~~~iiigsT~I~~~~~fi~~l~~l~~~~~~ 658 (664)
+.+++++|||||||+||+|++++|+|+++ .+++|+||||+|+||++|+++|..|++...+
T Consensus 605 ------------~~~~~~viVFvVGG~Ty~E~~~l~~l~~~~~~~~~~viiGsT~I~n~~~Fl~~l~~l~~~~~~ 667 (671)
T 1mqs_A 605 ------------RQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLGASNSS 667 (671)
T ss_dssp ------------CCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEESSBCCHHHHHHHHHHHHHHTTC
T ss_pred ------------cCCCCeEEEEEECCccHHHHHHHHHHHhhccCCCceEEEeeccccCHHHHHHHHHHhCccccc
Confidence 02468999999999999999999999987 3799999999999999999999999876533
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.96 E-value=2.4e-29 Score=233.16 Aligned_cols=133 Identities=26% Similarity=0.443 Sum_probs=120.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcCC----CCCCCeEEEEEeccchhHhhhhcCchhhhhcCceEEeccccCCCCCCCCeEEEE
Q 006024 16 KNFKQITRERLLYEMLRSAKTG----KSKSTWKVLIMDRLTVKIMSYACKMADITQEGVSLVEDLYRRRQPLPSMEAIYF 91 (664)
Q Consensus 16 ~~l~~~~~~~l~~~~L~~v~~g----~~~~~~KvLilD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~ 91 (664)
.+||+.+|+.|+ +||+.+.+. ...++|||||+|+.+++|||++|+++||+++||++|++|++.|+|+|+++||||
T Consensus 20 ~sLr~~qr~~l~-~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~~~aIYf 98 (159)
T 1y9j_A 20 ASIRERQTVALK-RMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRDVPAVYF 98 (159)
T ss_dssp CHHHHHHHHHHH-HHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTTSCCEEE
T ss_pred HHHHHHHHHHHH-HHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCCCCEEEE
Confidence 479999999999 899986521 124679999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHh---CCCcccccceeEEEecc
Q 006024 92 IQPTKENVVAFLSDMSGKSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLE 151 (664)
Q Consensus 92 i~Pt~~~i~~i~~d~~~~~~~y~~~~i~F~~~~p~~~le~la~---~~~~~~~i~~i~e~~ld 151 (664)
|+||.+||++|++||++ |+|++|||||++.+|+.++++||+ +.+..+.|++|.|+++|
T Consensus 99 v~Pt~enI~~i~~D~~~--~~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 99 VMPTEENIDRLCQDLRN--QLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp ECCCHHHHHHHHHHHHH--TCBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred ecCCHHHHHHHHHHhhh--cccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 99999999999999975 899999999999999999999996 35678888888888765
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=45.54 E-value=34 Score=22.63 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHhccchHHHhhHHHHHHHHHHH
Q 006024 356 LSTRDLQKLVQALPQYSEQIDKLSLHVEIAGK 387 (664)
Q Consensus 356 ~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~ 387 (664)
+++.++++++..|.+-..+.+++.-|+..+..
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 47889999999888888888888888876644
No 9
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=24.86 E-value=45 Score=32.03 Aligned_cols=42 Identities=7% Similarity=0.147 Sum_probs=31.6
Q ss_pred eEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHH
Q 006024 604 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKL 649 (664)
Q Consensus 604 ~viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l 649 (664)
.+.|.|-|||+-.-+..+.+. |.+++|.++.|...++.-+.+
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~a----GAd~~V~GsaIf~~~d~~~~i 214 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISASH----GANIIVAGTSIFNAEDPKYVI 214 (227)
T ss_dssp TCEEEEESSCCHHHHHHHHHH----TCCEEEESHHHHTCSSHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHc----CCCEEEEeHHHhCCCCHHHHH
Confidence 567899999998866666553 799999999999764443333
No 10
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=21.93 E-value=71 Score=29.98 Aligned_cols=45 Identities=11% Similarity=0.165 Sum_probs=36.6
Q ss_pred eEEEEEEcCc-CHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006024 604 RIFVFIVGGT-TRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITKLKML 652 (664)
Q Consensus 604 ~viVfvvGGv-TysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~l~~l 652 (664)
.+-|+..||+ |...+..+... |.+.++.++.+..|....+.+.+.
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~~----Gad~v~vG~al~~p~~~~~~~~~~ 220 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMDL----GVHCSVVGGAITRPKEITKRFVQV 220 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHHT----TCSEEEECHHHHCHHHHHHHHHHT
T ss_pred CCCEEEecCCCCHHHHHHHHHc----CCCEEEEChHHcCcHHHHHHHHHH
Confidence 3678899999 88888877653 788888889999999888888653
No 11
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=21.10 E-value=39 Score=32.24 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=29.3
Q ss_pred eEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHH
Q 006024 604 RIFVFIVGGTTRSELRVCHKLTAKLNREVVLGSSSLDDPPQFITK 648 (664)
Q Consensus 604 ~viVfvvGGvTysEi~~l~~l~~~~~~~iiigsT~I~~~~~fi~~ 648 (664)
.+-|++.||++-.-+..+... |.++++.++.|+..++.-+.
T Consensus 173 ~~pi~v~GGI~~~ni~~~~~a----GaD~vvvGsai~~~~d~~~~ 213 (228)
T 1h1y_A 173 SLDIEVDGGLGPSTIDVAASA----GANCIVAGSSIFGAAEPGEV 213 (228)
T ss_dssp TSEEEEESSCSTTTHHHHHHH----TCCEEEESHHHHTSSCHHHH
T ss_pred CCCEEEECCcCHHHHHHHHHc----CCCEEEECHHHHCCCCHHHH
Confidence 345899999998655444332 89999999999976544333
Done!