Query 006025
Match_columns 664
No_of_seqs 833 out of 4791
Neff 9.1
Searched_HMMs 46136
Date Thu Mar 28 17:16:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006025.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006025hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02927 antheraxanthin epoxid 100.0 3.1E-90 6.7E-95 759.7 65.8 661 1-664 1-668 (668)
2 PRK06617 2-octaprenyl-6-methox 100.0 2.3E-42 5E-47 368.7 26.7 364 78-482 2-373 (374)
3 PRK06753 hypothetical protein; 100.0 1.7E-40 3.7E-45 355.2 37.9 354 78-465 1-354 (373)
4 PRK08013 oxidoreductase; Provi 100.0 2.7E-41 5.8E-46 363.8 27.8 378 76-481 2-391 (400)
5 COG0654 UbiH 2-polyprenyl-6-me 100.0 6.9E-41 1.5E-45 358.6 27.6 361 77-470 2-371 (387)
6 PRK06475 salicylate hydroxylas 100.0 1.3E-39 2.9E-44 350.8 36.5 356 78-464 3-374 (400)
7 PRK08849 2-octaprenyl-3-methyl 100.0 1.7E-40 3.8E-45 355.8 28.4 368 77-481 3-383 (384)
8 PRK07588 hypothetical protein; 100.0 6.6E-40 1.4E-44 352.6 32.7 364 78-468 1-368 (391)
9 PRK08850 2-octaprenyl-6-methox 100.0 1.8E-40 3.8E-45 358.4 27.2 377 76-481 3-391 (405)
10 PRK08773 2-octaprenyl-3-methyl 100.0 3.8E-40 8.2E-45 354.6 27.3 380 74-481 3-391 (392)
11 TIGR01989 COQ6 Ubiquinone bios 100.0 1.2E-39 2.6E-44 354.5 30.6 372 78-471 1-430 (437)
12 PRK05714 2-octaprenyl-3-methyl 100.0 3.3E-40 7.1E-45 356.6 25.3 377 77-482 2-395 (405)
13 PRK06185 hypothetical protein; 100.0 7.3E-39 1.6E-43 346.6 32.7 376 74-479 3-391 (407)
14 TIGR03219 salicylate_mono sali 100.0 2E-38 4.2E-43 343.5 35.6 341 78-439 1-370 (414)
15 PRK08163 salicylate hydroxylas 100.0 6.6E-38 1.4E-42 338.0 38.5 343 76-439 3-353 (396)
16 PRK07236 hypothetical protein; 100.0 3.4E-38 7.3E-43 338.4 35.9 335 75-440 4-373 (386)
17 PRK07045 putative monooxygenas 100.0 3.7E-38 7.9E-43 338.7 36.2 342 75-437 3-353 (388)
18 PRK08020 ubiF 2-octaprenyl-3-m 100.0 2.9E-39 6.3E-44 347.9 26.7 378 75-481 3-390 (391)
19 PRK07538 hypothetical protein; 100.0 1.1E-37 2.3E-42 337.5 38.2 336 78-437 1-361 (413)
20 PRK06183 mhpA 3-(3-hydroxyphen 100.0 2.9E-38 6.4E-43 352.3 32.4 362 75-470 8-379 (538)
21 PRK05868 hypothetical protein; 100.0 2.5E-37 5.4E-42 328.9 36.4 335 78-435 2-345 (372)
22 PRK07494 2-octaprenyl-6-methox 100.0 6.6E-39 1.4E-43 344.7 23.1 373 74-481 4-386 (388)
23 PRK07364 2-octaprenyl-6-methox 100.0 4.4E-38 9.5E-43 341.5 28.6 376 76-482 17-404 (415)
24 PRK07333 2-octaprenyl-6-methox 100.0 7.2E-38 1.6E-42 338.6 26.8 375 78-482 2-390 (403)
25 PRK06834 hypothetical protein; 100.0 9E-37 1.9E-41 334.2 35.4 367 76-486 2-374 (488)
26 PRK06996 hypothetical protein; 100.0 8.7E-38 1.9E-42 336.3 26.9 366 73-480 7-393 (398)
27 PRK06847 hypothetical protein; 100.0 2.3E-36 5E-41 323.6 37.8 340 76-438 3-347 (375)
28 KOG2614 Kynurenine 3-monooxyge 100.0 2.9E-37 6.4E-42 310.8 27.8 334 78-426 3-359 (420)
29 PRK06184 hypothetical protein; 100.0 1.6E-36 3.4E-41 336.1 36.0 334 76-438 2-348 (502)
30 PRK09126 hypothetical protein; 100.0 1.2E-37 2.6E-42 335.5 24.8 375 77-479 3-387 (392)
31 PRK08294 phenol 2-monooxygenas 100.0 5.2E-36 1.1E-40 336.8 38.0 342 75-439 30-409 (634)
32 PRK08244 hypothetical protein; 100.0 2.8E-36 6E-41 333.6 34.3 332 77-437 2-339 (493)
33 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.3E-36 2.8E-41 326.4 25.3 361 79-471 1-370 (382)
34 PF01494 FAD_binding_3: FAD bi 100.0 1.5E-36 3.2E-41 322.4 25.3 340 78-434 2-355 (356)
35 PRK07190 hypothetical protein; 100.0 5E-35 1.1E-39 320.0 36.9 331 76-437 4-342 (487)
36 PRK07608 ubiquinone biosynthes 100.0 4.3E-36 9.2E-41 323.1 26.6 375 77-480 5-387 (388)
37 TIGR01988 Ubi-OHases Ubiquinon 100.0 5.8E-36 1.3E-40 321.8 27.7 362 79-469 1-371 (385)
38 PRK06126 hypothetical protein; 100.0 4.7E-35 1E-39 327.8 34.5 340 75-437 5-370 (545)
39 PRK05732 2-octaprenyl-6-methox 100.0 1E-35 2.2E-40 321.0 27.9 376 76-481 2-391 (395)
40 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 1.5E-34 3.3E-39 309.7 34.9 338 77-441 2-349 (390)
41 PRK08243 4-hydroxybenzoate 3-m 100.0 9E-35 2E-39 312.4 32.8 338 77-440 2-348 (392)
42 PRK08132 FAD-dependent oxidore 100.0 1.6E-34 3.5E-39 323.2 34.7 334 75-437 21-366 (547)
43 PLN02985 squalene monooxygenas 100.0 3.7E-34 8.1E-39 314.1 33.7 341 74-437 40-396 (514)
44 PTZ00367 squalene epoxidase; P 100.0 2E-33 4.3E-38 309.4 37.3 340 76-437 32-416 (567)
45 KOG3855 Monooxygenase involved 100.0 2.4E-28 5.2E-33 243.9 22.4 386 75-480 34-478 (481)
46 PLN00093 geranylgeranyl diphos 100.0 6.9E-27 1.5E-31 252.8 33.2 316 74-429 36-371 (450)
47 PRK08255 salicylyl-CoA 5-hydro 100.0 9.6E-28 2.1E-32 276.2 27.0 315 78-437 1-334 (765)
48 TIGR02032 GG-red-SF geranylger 100.0 5.9E-27 1.3E-31 242.2 28.1 288 78-397 1-295 (295)
49 TIGR02023 BchP-ChlP geranylger 100.0 3.9E-26 8.4E-31 245.0 34.3 307 78-430 1-323 (388)
50 PRK11445 putative oxidoreducta 100.0 9.9E-27 2.1E-31 245.9 26.4 306 78-428 2-317 (351)
51 TIGR02028 ChlP geranylgeranyl 99.9 4.1E-25 9E-30 237.0 33.8 312 78-429 1-332 (398)
52 COG0644 FixC Dehydrogenases (f 99.9 5.3E-24 1.2E-28 228.6 33.7 318 76-429 2-326 (396)
53 PRK10157 putative oxidoreducta 99.9 8.6E-24 1.9E-28 228.8 30.3 332 76-428 4-356 (428)
54 PRK10015 oxidoreductase; Provi 99.9 5.9E-24 1.3E-28 229.8 27.7 329 76-427 4-355 (429)
55 KOG1298 Squalene monooxygenase 99.9 1.9E-22 4E-27 199.6 23.9 343 74-435 42-394 (509)
56 TIGR01790 carotene-cycl lycope 99.9 8.2E-22 1.8E-26 212.0 27.8 307 79-430 1-321 (388)
57 PLN02463 lycopene beta cyclase 99.9 6.5E-20 1.4E-24 197.5 28.3 313 74-428 25-364 (447)
58 TIGR01789 lycopene_cycl lycope 99.9 6.3E-20 1.4E-24 194.4 25.9 296 79-432 1-311 (370)
59 PLN02697 lycopene epsilon cycl 99.8 9.7E-19 2.1E-23 191.1 31.2 313 75-429 106-441 (529)
60 PF04820 Trp_halogenase: Trypt 99.8 3E-19 6.6E-24 193.6 25.1 321 79-435 1-378 (454)
61 PF05834 Lycopene_cycl: Lycope 99.7 1.3E-15 2.7E-20 162.3 27.6 278 79-399 1-290 (374)
62 PF00498 FHA: FHA domain; Int 99.7 4.8E-17 1E-21 128.2 8.5 67 556-632 1-68 (68)
63 PF08491 SE: Squalene epoxidas 99.7 2.7E-15 5.8E-20 147.0 19.8 217 232-463 1-219 (276)
64 cd00060 FHA Forkhead associate 99.4 1.6E-12 3.5E-17 111.3 11.4 96 530-641 2-100 (102)
65 TIGR03354 VI_FHA type VI secre 99.4 1.8E-12 3.9E-17 136.6 11.0 80 543-637 17-100 (396)
66 KOG1882 Transcriptional regula 99.3 3.6E-12 7.8E-17 118.1 5.2 99 526-637 170-281 (293)
67 PRK04176 ribulose-1,5-biphosph 99.3 5.2E-11 1.1E-15 119.4 13.2 136 76-250 24-179 (257)
68 COG2081 Predicted flavoprotein 99.2 2.4E-11 5.2E-16 123.7 10.0 159 76-245 2-168 (408)
69 COG1716 FOG: FHA domain [Signa 99.2 5.2E-11 1.1E-15 114.7 9.6 72 553-636 88-159 (191)
70 TIGR00292 thiazole biosynthesi 99.2 2.2E-10 4.7E-15 114.6 14.3 136 76-250 20-176 (254)
71 PRK01747 mnmC bifunctional tRN 99.2 4.3E-09 9.2E-14 120.8 25.2 61 185-245 403-464 (662)
72 PF01266 DAO: FAD dependent ox 99.1 2.6E-09 5.6E-14 113.3 20.4 63 183-246 140-205 (358)
73 PRK12409 D-amino acid dehydrog 99.1 1.1E-08 2.4E-13 110.9 25.3 59 187-245 194-259 (410)
74 PRK11259 solA N-methyltryptoph 99.1 1.5E-08 3.2E-13 108.7 25.1 59 186-245 145-205 (376)
75 TIGR01377 soxA_mon sarcosine o 99.1 1.2E-08 2.6E-13 109.5 24.3 65 185-250 140-207 (380)
76 smart00240 FHA Forkhead associ 99.1 8E-11 1.7E-15 87.1 4.9 48 556-608 1-50 (52)
77 PF01946 Thi4: Thi4 family; PD 99.1 6.8E-10 1.5E-14 104.3 11.5 138 76-250 16-171 (230)
78 COG1635 THI4 Ribulose 1,5-bisp 99.1 1.8E-09 3.8E-14 100.7 12.8 135 77-250 30-184 (262)
79 COG3456 Predicted component of 99.0 6.9E-10 1.5E-14 112.7 8.8 79 553-645 25-106 (430)
80 KOG2415 Electron transfer flav 99.0 3.8E-08 8.2E-13 99.7 20.9 326 74-426 73-444 (621)
81 PRK13369 glycerol-3-phosphate 99.0 1.2E-07 2.7E-12 105.1 25.5 174 74-250 3-222 (502)
82 PF03486 HI0933_like: HI0933-l 99.0 2.7E-09 5.9E-14 113.7 10.5 145 78-245 1-167 (409)
83 PRK05192 tRNA uridine 5-carbox 99.0 1.3E-08 2.9E-13 111.8 15.9 150 76-245 3-158 (618)
84 PRK11728 hydroxyglutarate oxid 98.9 1.2E-08 2.5E-13 110.0 15.4 66 184-250 143-211 (393)
85 PRK00711 D-amino acid dehydrog 98.9 1.2E-07 2.5E-12 103.2 22.6 59 186-245 197-258 (416)
86 PRK12266 glpD glycerol-3-phosp 98.9 2.1E-07 4.5E-12 103.3 24.6 36 75-110 4-39 (508)
87 TIGR01373 soxB sarcosine oxida 98.9 2.4E-07 5.2E-12 100.4 24.6 39 73-111 26-66 (407)
88 PF13738 Pyr_redox_3: Pyridine 98.9 5.7E-09 1.2E-13 101.4 7.9 134 81-245 1-139 (203)
89 KOG1881 Anion exchanger adapto 98.8 1.3E-09 2.8E-14 116.8 3.3 105 526-645 153-268 (793)
90 PF01134 GIDA: Glucose inhibit 98.8 5.5E-08 1.2E-12 101.6 14.6 144 79-242 1-150 (392)
91 KOG1880 Nuclear inhibitor of p 98.8 3.6E-09 7.9E-14 101.8 4.0 103 526-643 15-119 (337)
92 PLN02172 flavin-containing mon 98.7 9E-08 2E-12 104.3 13.8 150 75-245 8-174 (461)
93 COG3380 Predicted NAD/FAD-depe 98.7 7E-08 1.5E-12 92.9 11.1 142 79-239 3-155 (331)
94 COG0579 Predicted dehydrogenas 98.7 1.4E-07 3E-12 99.8 14.0 171 76-246 2-213 (429)
95 PF12831 FAD_oxidored: FAD dep 98.7 1.3E-08 2.7E-13 110.6 6.2 146 79-247 1-153 (428)
96 COG0665 DadA Glycine/D-amino a 98.7 1.1E-06 2.5E-11 94.4 21.3 63 185-248 151-216 (387)
97 PRK13339 malate:quinone oxidor 98.7 1.4E-07 3E-12 102.9 13.2 68 183-250 177-254 (497)
98 TIGR03329 Phn_aa_oxid putative 98.6 3.4E-07 7.4E-12 100.7 14.1 59 185-245 178-238 (460)
99 TIGR00275 flavoprotein, HI0933 98.6 6.3E-08 1.4E-12 104.2 7.7 153 81-244 1-160 (400)
100 TIGR03364 HpnW_proposed FAD de 98.6 4.4E-07 9.5E-12 96.8 14.1 56 185-245 140-198 (365)
101 PRK05257 malate:quinone oxidor 98.6 7.5E-07 1.6E-11 98.0 16.2 68 183-250 176-253 (494)
102 PRK11883 protoporphyrinogen ox 98.6 2.2E-05 4.7E-10 86.4 27.7 55 192-246 223-277 (451)
103 PLN02464 glycerol-3-phosphate 98.6 3.6E-06 7.9E-11 95.4 21.8 35 76-110 70-104 (627)
104 TIGR01292 TRX_reduct thioredox 98.6 3.2E-07 6.9E-12 94.9 10.8 109 78-244 1-112 (300)
105 PF00743 FMO-like: Flavin-bind 98.5 3E-07 6.4E-12 101.7 10.3 138 78-245 2-151 (531)
106 TIGR00562 proto_IX_ox protopor 98.5 1.8E-05 3.8E-10 87.4 24.4 49 196-244 231-279 (462)
107 PRK11101 glpA sn-glycerol-3-ph 98.5 6.4E-07 1.4E-11 100.3 12.6 60 186-245 145-212 (546)
108 PTZ00383 malate:quinone oxidor 98.5 1.5E-06 3.3E-11 95.2 15.1 65 185-250 206-280 (497)
109 PRK12416 protoporphyrinogen ox 98.5 7E-06 1.5E-10 90.6 20.6 59 191-250 227-285 (463)
110 TIGR00136 gidA glucose-inhibit 98.5 1.3E-06 2.8E-11 96.2 14.4 148 78-245 1-155 (617)
111 TIGR01320 mal_quin_oxido malat 98.5 9.1E-07 2E-11 97.2 13.4 67 184-250 172-247 (483)
112 PRK15317 alkyl hydroperoxide r 98.5 4.9E-07 1.1E-11 100.8 11.3 112 75-244 209-322 (517)
113 COG2072 TrkA Predicted flavopr 98.5 8.7E-07 1.9E-11 96.3 12.6 37 74-110 5-42 (443)
114 KOG1399 Flavin-containing mono 98.5 9E-07 2E-11 94.9 12.1 139 76-243 5-152 (448)
115 COG0578 GlpA Glycerol-3-phosph 98.5 9.6E-06 2.1E-10 87.8 19.9 62 75-139 10-71 (532)
116 PRK07804 L-aspartate oxidase; 98.5 3E-06 6.6E-11 94.8 16.4 36 76-111 15-50 (541)
117 PLN02661 Putative thiazole syn 98.5 2.5E-06 5.4E-11 87.9 14.2 38 74-111 89-127 (357)
118 TIGR03140 AhpF alkyl hydropero 98.5 1.3E-06 2.9E-11 97.2 13.1 112 75-244 210-323 (515)
119 TIGR00551 nadB L-aspartate oxi 98.4 5.8E-06 1.3E-10 91.5 17.2 59 190-248 128-193 (488)
120 PRK09231 fumarate reductase fl 98.4 2.5E-06 5.5E-11 96.1 14.4 57 191-247 134-199 (582)
121 COG0492 TrxB Thioredoxin reduc 98.4 1.5E-06 3.2E-11 89.0 11.4 112 76-245 2-116 (305)
122 PRK08274 tricarballylate dehyd 98.4 3.5E-06 7.5E-11 93.0 15.3 36 76-111 3-38 (466)
123 PRK05335 tRNA (uracil-5-)-meth 98.4 1.4E-06 3E-11 92.1 11.1 114 78-215 3-126 (436)
124 PRK06481 fumarate reductase fl 98.4 1.1E-05 2.4E-10 89.6 18.9 36 76-111 60-95 (506)
125 TIGR01813 flavo_cyto_c flavocy 98.4 5.2E-06 1.1E-10 90.9 15.4 33 79-111 1-34 (439)
126 TIGR01176 fum_red_Fp fumarate 98.4 4.2E-06 9.1E-11 94.2 14.7 57 190-246 132-197 (580)
127 TIGR01812 sdhA_frdA_Gneg succi 98.4 4.3E-06 9.4E-11 94.4 14.6 33 79-111 1-33 (566)
128 PRK06069 sdhA succinate dehydr 98.3 8.7E-06 1.9E-10 92.0 14.8 36 76-111 4-42 (577)
129 TIGR03143 AhpF_homolog putativ 98.3 2.7E-06 5.8E-11 95.6 10.2 33 77-109 4-36 (555)
130 PRK08401 L-aspartate oxidase; 98.3 1.6E-05 3.4E-10 87.6 15.8 33 78-110 2-34 (466)
131 PLN02612 phytoene desaturase 98.3 0.00011 2.3E-09 82.8 22.5 36 75-110 91-126 (567)
132 PF00070 Pyr_redox: Pyridine n 98.3 1.8E-05 4E-10 64.1 11.9 33 79-111 1-33 (80)
133 PRK06175 L-aspartate oxidase; 98.2 1.3E-05 2.8E-10 87.2 14.1 35 76-111 3-37 (433)
134 PF13454 NAD_binding_9: FAD-NA 98.2 1.6E-05 3.5E-10 73.5 12.6 57 186-242 90-155 (156)
135 PLN02568 polyamine oxidase 98.2 3.3E-05 7.1E-10 86.0 17.0 53 190-242 242-294 (539)
136 PRK05945 sdhA succinate dehydr 98.2 2.9E-06 6.3E-11 95.7 8.3 36 76-111 2-39 (575)
137 PLN02529 lysine-specific histo 98.2 8.8E-07 1.9E-11 100.6 4.0 74 29-110 120-193 (738)
138 PF13450 NAD_binding_8: NAD(P) 98.2 1.9E-06 4.1E-11 67.3 4.6 30 82-111 1-30 (68)
139 PRK07573 sdhA succinate dehydr 98.2 3.3E-05 7.2E-10 87.9 16.5 36 76-111 34-69 (640)
140 PRK07121 hypothetical protein; 98.2 4.3E-05 9.3E-10 84.9 16.6 36 76-111 19-54 (492)
141 PF00890 FAD_binding_2: FAD bi 98.2 1.7E-05 3.6E-10 86.3 13.2 33 79-111 1-33 (417)
142 KOG2820 FAD-dependent oxidored 98.2 1.9E-05 4.1E-10 78.8 12.0 59 184-243 147-211 (399)
143 PRK10262 thioredoxin reductase 98.2 9.6E-06 2.1E-10 84.8 10.8 35 75-109 4-38 (321)
144 PRK09897 hypothetical protein; 98.2 1.3E-05 2.9E-10 88.4 12.0 40 204-243 125-165 (534)
145 COG1231 Monoamine oxidase [Ami 98.2 1.6E-05 3.5E-10 83.1 11.8 46 195-241 214-259 (450)
146 PRK05976 dihydrolipoamide dehy 98.2 1.3E-05 2.8E-10 88.6 11.9 34 76-109 3-36 (472)
147 PRK08010 pyridine nucleotide-d 98.1 1E-05 2.2E-10 88.7 10.8 35 76-110 2-36 (441)
148 PRK06854 adenylylsulfate reduc 98.1 4.5E-05 9.8E-10 86.5 16.1 35 77-111 11-47 (608)
149 PRK08071 L-aspartate oxidase; 98.1 3.3E-05 7.2E-10 85.8 14.8 34 77-111 3-36 (510)
150 PRK06467 dihydrolipoamide dehy 98.1 1.5E-05 3.3E-10 87.8 11.4 35 76-110 3-37 (471)
151 PRK14694 putative mercuric red 98.1 5.3E-05 1.1E-09 83.6 15.5 37 73-109 2-38 (468)
152 PRK06452 sdhA succinate dehydr 98.1 4.5E-05 9.8E-10 85.8 14.9 36 76-111 4-39 (566)
153 PRK08641 sdhA succinate dehydr 98.1 5.6E-05 1.2E-09 85.4 15.6 36 76-111 2-37 (589)
154 PRK06115 dihydrolipoamide dehy 98.1 5E-06 1.1E-10 91.6 6.3 34 76-109 2-35 (466)
155 PRK07057 sdhA succinate dehydr 98.0 0.00014 3.1E-09 82.2 17.5 35 76-110 11-45 (591)
156 PF07992 Pyr_redox_2: Pyridine 98.0 7.9E-06 1.7E-10 79.0 6.4 32 79-110 1-32 (201)
157 COG1232 HemY Protoporphyrinoge 98.0 3.8E-05 8.3E-10 82.1 12.0 58 191-250 216-273 (444)
158 PRK07803 sdhA succinate dehydr 98.0 0.0001 2.3E-09 83.8 16.4 36 76-111 7-42 (626)
159 PTZ00139 Succinate dehydrogena 98.0 0.00014 3.1E-09 82.5 17.3 36 76-111 28-63 (617)
160 PRK06416 dihydrolipoamide dehy 98.0 7.2E-05 1.6E-09 82.4 14.4 35 76-110 3-37 (462)
161 PLN02507 glutathione reductase 98.0 4.4E-05 9.6E-10 84.6 12.5 34 75-108 23-56 (499)
162 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 3.9E-05 8.4E-10 81.8 11.4 33 79-111 2-34 (433)
163 PLN00128 Succinate dehydrogena 98.0 0.00013 2.8E-09 83.0 15.6 36 76-111 49-84 (635)
164 PRK07818 dihydrolipoamide dehy 98.0 2.9E-05 6.2E-10 85.7 10.0 34 76-109 3-36 (466)
165 PRK06327 dihydrolipoamide dehy 98.0 9.3E-05 2E-09 81.8 14.0 33 76-108 3-35 (475)
166 PRK12842 putative succinate de 98.0 0.00012 2.7E-09 82.6 15.1 36 76-111 8-43 (574)
167 PRK09078 sdhA succinate dehydr 98.0 0.0002 4.4E-09 81.1 16.8 35 76-110 11-45 (598)
168 PRK12834 putative FAD-binding 97.9 0.00026 5.6E-09 79.7 16.8 35 76-110 3-37 (549)
169 PRK07843 3-ketosteroid-delta-1 97.9 0.00018 3.8E-09 81.0 15.1 37 75-111 5-41 (557)
170 COG1233 Phytoene dehydrogenase 97.9 1.1E-05 2.3E-10 89.2 5.1 36 76-111 2-37 (487)
171 PRK06263 sdhA succinate dehydr 97.9 0.00015 3.2E-09 81.5 14.3 34 76-110 6-39 (543)
172 PRK09077 L-aspartate oxidase; 97.9 0.00012 2.5E-09 82.1 13.2 35 76-111 7-41 (536)
173 PRK09754 phenylpropionate diox 97.9 9E-05 2E-09 79.9 11.8 35 76-110 2-38 (396)
174 PRK08205 sdhA succinate dehydr 97.9 0.00031 6.8E-09 79.4 16.5 35 76-111 4-38 (583)
175 PRK08275 putative oxidoreducta 97.9 0.00023 4.9E-09 80.1 15.2 36 76-111 8-45 (554)
176 PRK08958 sdhA succinate dehydr 97.9 0.00034 7.3E-09 79.1 16.4 35 77-111 7-41 (588)
177 PRK06134 putative FAD-binding 97.8 0.00041 8.9E-09 78.4 16.0 36 75-110 10-45 (581)
178 PLN02815 L-aspartate oxidase 97.8 0.00018 4E-09 81.0 13.0 36 75-111 27-62 (594)
179 PRK04965 NADH:flavorubredoxin 97.8 0.00023 5E-09 76.2 13.1 100 77-245 141-240 (377)
180 PRK08626 fumarate reductase fl 97.8 0.00034 7.3E-09 80.0 15.0 36 76-111 4-39 (657)
181 COG0445 GidA Flavin-dependent 97.8 5.5E-05 1.2E-09 80.5 7.4 145 76-243 3-157 (621)
182 COG1249 Lpd Pyruvate/2-oxoglut 97.8 0.00025 5.5E-09 76.6 12.5 103 76-248 172-276 (454)
183 PRK07395 L-aspartate oxidase; 97.8 0.00018 3.9E-09 80.6 11.9 35 76-111 8-42 (553)
184 COG0029 NadB Aspartate oxidase 97.7 0.00032 7E-09 74.1 12.6 155 79-249 9-201 (518)
185 PRK07251 pyridine nucleotide-d 97.7 3.2E-05 6.9E-10 84.6 5.2 35 76-110 2-36 (438)
186 PRK05249 soluble pyridine nucl 97.7 0.00031 6.6E-09 77.5 13.0 100 77-246 175-274 (461)
187 TIGR01438 TGR thioredoxin and 97.7 0.00019 4.2E-09 79.2 11.3 33 77-109 2-34 (484)
188 TIGR01811 sdhA_Bsu succinate d 97.7 0.00042 9.1E-09 78.5 14.2 31 80-110 1-31 (603)
189 PRK13512 coenzyme A disulfide 97.7 0.00017 3.8E-09 78.7 10.8 32 79-110 3-36 (438)
190 KOG0029 Amine oxidase [Seconda 97.7 3.5E-05 7.6E-10 84.3 5.2 39 73-111 11-49 (501)
191 PRK07845 flavoprotein disulfid 97.7 0.00033 7.1E-09 77.2 12.9 33 78-110 2-34 (466)
192 PRK12844 3-ketosteroid-delta-1 97.7 0.00049 1.1E-08 77.4 14.2 35 76-110 5-39 (557)
193 PRK06370 mercuric reductase; V 97.7 4E-05 8.7E-10 84.5 5.4 35 75-109 3-37 (463)
194 PRK12843 putative FAD-binding 97.7 0.001 2.3E-08 75.1 16.9 35 76-110 15-49 (578)
195 KOG0615 Serine/threonine prote 97.7 7.6E-05 1.7E-09 76.4 6.6 81 553-644 63-158 (475)
196 PRK14727 putative mercuric red 97.7 0.00027 5.7E-09 78.2 11.2 34 76-109 15-48 (479)
197 PRK06116 glutathione reductase 97.7 4.9E-05 1.1E-09 83.5 5.3 34 76-109 3-36 (450)
198 PRK09564 coenzyme A disulfide 97.6 0.00015 3.2E-09 79.6 9.0 32 79-110 2-35 (444)
199 PRK05249 soluble pyridine nucl 97.6 5E-05 1.1E-09 83.7 5.2 36 75-110 3-38 (461)
200 TIGR01421 gluta_reduc_1 glutat 97.6 4.7E-05 1E-09 83.4 4.9 33 77-109 2-34 (450)
201 PLN02546 glutathione reductase 97.6 0.00026 5.6E-09 79.2 10.8 34 75-108 77-110 (558)
202 PRK12839 hypothetical protein; 97.6 0.0011 2.4E-08 74.6 15.9 37 75-111 6-42 (572)
203 KOG2844 Dimethylglycine dehydr 97.6 0.0012 2.6E-08 71.7 15.1 74 185-259 182-258 (856)
204 PRK07512 L-aspartate oxidase; 97.6 0.00074 1.6E-08 75.2 14.3 34 76-111 8-41 (513)
205 TIGR02485 CobZ_N-term precorri 97.6 0.00055 1.2E-08 74.8 13.1 60 191-250 124-189 (432)
206 PRK07846 mycothione reductase; 97.6 0.00052 1.1E-08 75.2 12.9 99 77-246 166-264 (451)
207 KOG2665 Predicted FAD-dependen 97.6 0.00018 3.9E-09 71.1 8.1 176 74-250 45-263 (453)
208 PRK09754 phenylpropionate diox 97.6 0.00065 1.4E-08 73.3 13.3 99 77-245 144-242 (396)
209 PTZ00318 NADH dehydrogenase-li 97.6 0.00038 8.2E-09 75.7 11.6 35 76-110 9-43 (424)
210 PRK12845 3-ketosteroid-delta-1 97.6 0.0016 3.5E-08 73.2 16.8 37 74-111 13-49 (564)
211 PRK07208 hypothetical protein; 97.6 6E-05 1.3E-09 83.6 5.3 37 75-111 2-38 (479)
212 PTZ00153 lipoamide dehydrogena 97.6 0.0005 1.1E-08 78.0 12.6 33 77-109 116-148 (659)
213 COG1249 Lpd Pyruvate/2-oxoglut 97.6 0.0003 6.4E-09 76.1 10.0 36 75-110 2-37 (454)
214 TIGR03315 Se_ygfK putative sel 97.6 8.5E-05 1.8E-09 87.2 6.3 36 76-111 536-571 (1012)
215 PTZ00306 NADH-dependent fumara 97.6 0.0012 2.6E-08 80.4 16.4 37 75-111 407-443 (1167)
216 TIGR01424 gluta_reduc_2 glutat 97.6 5.9E-05 1.3E-09 82.6 4.7 33 77-109 2-34 (446)
217 PRK06912 acoL dihydrolipoamide 97.6 0.0012 2.5E-08 72.8 14.6 32 79-110 2-33 (458)
218 PLN02852 ferredoxin-NADP+ redu 97.5 0.00012 2.6E-09 80.0 6.4 36 76-111 25-62 (491)
219 PF13434 K_oxygenase: L-lysine 97.5 0.00057 1.2E-08 71.7 11.1 149 77-250 2-165 (341)
220 PRK11749 dihydropyrimidine deh 97.5 5.3E-05 1.1E-09 83.3 3.5 38 74-111 137-174 (457)
221 PRK06416 dihydrolipoamide dehy 97.5 0.00082 1.8E-08 74.1 13.0 99 77-245 172-273 (462)
222 COG3075 GlpB Anaerobic glycero 97.5 0.00011 2.4E-09 73.2 5.3 50 77-136 2-51 (421)
223 KOG2852 Possible oxidoreductas 97.5 0.00057 1.2E-08 66.9 9.9 36 76-111 9-50 (380)
224 PF06039 Mqo: Malate:quinone o 97.5 0.0015 3.2E-08 69.1 13.7 61 185-245 176-245 (488)
225 PRK06567 putative bifunctional 97.5 0.0001 2.2E-09 85.1 5.6 36 75-110 381-416 (1028)
226 TIGR02733 desat_CrtD C-3',4' d 97.5 9E-05 1.9E-09 82.4 5.1 34 78-111 2-35 (492)
227 COG3349 Uncharacterized conser 97.5 8.8E-05 1.9E-09 79.2 4.5 35 78-112 1-35 (485)
228 TIGR02730 carot_isom carotene 97.5 9.2E-05 2E-09 82.3 5.0 60 191-250 230-292 (493)
229 PLN02328 lysine-specific histo 97.5 0.00014 3.1E-09 83.4 6.5 56 53-111 217-272 (808)
230 TIGR01350 lipoamide_DH dihydro 97.5 0.001 2.2E-08 73.4 13.1 101 77-247 170-272 (461)
231 TIGR03197 MnmC_Cterm tRNA U-34 97.5 0.016 3.4E-07 62.2 21.9 61 185-245 130-191 (381)
232 PRK06116 glutathione reductase 97.5 0.00097 2.1E-08 73.2 12.8 99 77-245 167-266 (450)
233 TIGR02352 thiamin_ThiO glycine 97.5 0.011 2.3E-07 62.1 20.3 61 184-245 131-194 (337)
234 PRK07233 hypothetical protein; 97.5 0.0001 2.2E-09 80.6 4.8 53 192-244 200-254 (434)
235 PRK12779 putative bifunctional 97.5 0.00012 2.6E-09 86.6 5.3 35 76-110 305-339 (944)
236 PRK13800 putative oxidoreducta 97.5 0.0023 5E-08 76.1 16.1 36 76-111 12-47 (897)
237 PRK06292 dihydrolipoamide dehy 97.5 0.00012 2.6E-09 80.6 5.0 34 76-109 2-35 (460)
238 PLN02507 glutathione reductase 97.4 0.0014 3E-08 72.8 13.1 100 77-246 203-302 (499)
239 PLN02576 protoporphyrinogen ox 97.4 0.00013 2.9E-09 81.2 5.1 36 76-111 11-47 (496)
240 PRK12831 putative oxidoreducta 97.4 0.00015 3.3E-09 79.5 5.5 36 75-110 138-173 (464)
241 TIGR03452 mycothione_red mycot 97.4 0.0012 2.7E-08 72.3 12.6 98 77-245 169-266 (452)
242 cd02929 TMADH_HD_FMN Trimethyl 97.4 3.9E-05 8.5E-10 81.2 0.6 53 12-66 318-370 (370)
243 TIGR02053 MerA mercuric reduct 97.4 0.00015 3.2E-09 80.0 5.0 33 78-110 1-33 (463)
244 COG3634 AhpF Alkyl hydroperoxi 97.4 0.00038 8.2E-09 69.8 7.0 33 74-106 208-240 (520)
245 TIGR00031 UDP-GALP_mutase UDP- 97.4 0.00018 3.9E-09 76.1 5.1 33 78-110 2-34 (377)
246 TIGR01350 lipoamide_DH dihydro 97.4 0.00016 3.5E-09 79.7 4.8 32 78-109 2-33 (461)
247 PRK07845 flavoprotein disulfid 97.4 0.0019 4.2E-08 71.1 13.2 100 77-246 177-276 (466)
248 COG4529 Uncharacterized protei 97.4 0.00095 2.1E-08 70.7 10.0 46 204-249 122-169 (474)
249 PTZ00188 adrenodoxin reductase 97.4 0.00023 5E-09 76.7 5.6 37 76-112 38-75 (506)
250 KOG2853 Possible oxidoreductas 97.4 0.0036 7.8E-08 62.8 13.3 36 76-111 85-124 (509)
251 TIGR02734 crtI_fam phytoene de 97.4 0.00015 3.3E-09 80.8 4.3 61 190-250 219-282 (502)
252 TIGR01316 gltA glutamate synth 97.3 0.00028 6.1E-09 77.3 6.1 36 75-110 131-166 (449)
253 PLN02268 probable polyamine ox 97.3 0.0002 4.4E-09 78.3 5.0 39 204-242 212-250 (435)
254 PTZ00058 glutathione reductase 97.3 0.00028 6.1E-09 78.9 6.0 35 75-109 46-80 (561)
255 PRK09853 putative selenate red 97.3 0.00024 5.1E-09 83.2 5.5 37 75-111 537-573 (1019)
256 TIGR01424 gluta_reduc_2 glutat 97.3 0.0022 4.9E-08 70.2 12.9 99 77-245 166-264 (446)
257 TIGR01421 gluta_reduc_1 glutat 97.3 0.0023 4.9E-08 70.2 12.8 100 77-246 166-267 (450)
258 COG1148 HdrA Heterodisulfide r 97.3 0.00025 5.4E-09 74.2 4.8 35 77-111 124-158 (622)
259 PRK06912 acoL dihydrolipoamide 97.3 0.0027 5.8E-08 69.9 13.3 99 77-246 170-270 (458)
260 TIGR03169 Nterm_to_SelD pyridi 97.3 0.0014 2.9E-08 70.0 10.6 32 79-110 1-35 (364)
261 PRK06467 dihydrolipoamide dehy 97.3 0.002 4.4E-08 71.0 12.3 100 77-247 174-277 (471)
262 PRK04965 NADH:flavorubredoxin 97.3 0.0014 2.9E-08 70.3 10.6 33 78-110 3-37 (377)
263 PRK07818 dihydrolipoamide dehy 97.3 0.0026 5.7E-08 70.1 13.0 100 77-246 172-275 (466)
264 PTZ00052 thioredoxin reductase 97.3 0.00024 5.2E-09 78.9 4.7 33 77-109 5-37 (499)
265 PRK07251 pyridine nucleotide-d 97.3 0.0021 4.5E-08 70.3 12.1 99 77-246 157-255 (438)
266 PTZ00363 rab-GDP dissociation 97.3 0.00027 6E-09 76.5 4.8 37 75-111 2-38 (443)
267 PRK06115 dihydrolipoamide dehy 97.2 0.0024 5.1E-08 70.4 12.1 100 77-246 174-278 (466)
268 PRK12775 putative trifunctiona 97.2 0.00037 8.1E-09 83.2 6.1 35 76-110 429-463 (1006)
269 PF13434 K_oxygenase: L-lysine 97.2 0.0036 7.8E-08 65.7 12.7 137 75-243 188-340 (341)
270 PRK12778 putative bifunctional 97.2 0.0004 8.8E-09 81.1 6.2 36 75-110 429-464 (752)
271 TIGR01372 soxA sarcosine oxida 97.2 0.00041 8.8E-09 83.2 6.2 36 76-111 162-197 (985)
272 PRK12810 gltD glutamate syntha 97.2 0.00038 8.3E-09 76.7 5.6 37 75-111 141-177 (471)
273 PRK13748 putative mercuric red 97.2 0.00034 7.4E-09 79.2 5.2 34 76-109 97-130 (561)
274 TIGR02731 phytoene_desat phyto 97.2 0.00031 6.8E-09 77.2 4.7 33 79-111 1-33 (453)
275 TIGR02053 MerA mercuric reduct 97.2 0.0032 6.9E-08 69.5 12.6 100 77-246 166-268 (463)
276 COG0562 Glf UDP-galactopyranos 97.2 0.00041 9E-09 69.1 4.8 34 78-111 2-35 (374)
277 PRK12769 putative oxidoreducta 97.2 0.00037 8.1E-09 80.1 5.3 35 76-110 326-360 (654)
278 TIGR02374 nitri_red_nirB nitri 97.2 0.0024 5.3E-08 74.8 12.0 100 77-245 140-239 (785)
279 PRK06327 dihydrolipoamide dehy 97.2 0.0037 8E-08 69.1 12.8 100 77-246 183-286 (475)
280 PF00732 GMC_oxred_N: GMC oxid 97.2 0.0003 6.5E-09 72.6 3.8 34 78-111 1-35 (296)
281 PRK05976 dihydrolipoamide dehy 97.2 0.0044 9.5E-08 68.5 13.1 34 77-110 180-213 (472)
282 PLN02487 zeta-carotene desatur 97.2 0.00057 1.2E-08 76.3 6.0 37 76-112 74-110 (569)
283 KOG2311 NAD/FAD-utilizing prot 97.1 0.0014 3E-08 68.6 8.2 150 75-250 26-190 (679)
284 PRK06370 mercuric reductase; V 97.1 0.0045 9.7E-08 68.3 13.0 100 77-246 171-273 (463)
285 TIGR02500 type_III_yscD type I 97.1 0.0014 3.1E-08 70.5 8.6 81 536-634 8-89 (410)
286 PRK14989 nitrite reductase sub 97.1 0.0021 4.5E-08 75.5 10.4 41 203-245 74-114 (847)
287 PRK12814 putative NADPH-depend 97.1 0.00058 1.3E-08 78.3 5.7 37 75-111 191-227 (652)
288 TIGR03378 glycerol3P_GlpB glyc 97.1 0.00057 1.2E-08 72.7 5.1 49 78-136 1-49 (419)
289 TIGR03452 mycothione_red mycot 97.1 0.0025 5.4E-08 69.9 10.3 31 77-109 2-32 (452)
290 PRK14989 nitrite reductase sub 97.1 0.0038 8.3E-08 73.3 12.3 101 77-246 145-247 (847)
291 PRK13977 myosin-cross-reactive 97.1 0.00067 1.5E-08 74.6 5.6 36 76-111 21-60 (576)
292 PRK12837 3-ketosteroid-delta-1 97.1 0.00054 1.2E-08 76.4 4.9 35 76-111 6-40 (513)
293 PRK06292 dihydrolipoamide dehy 97.1 0.0063 1.4E-07 67.1 13.1 34 77-110 169-202 (460)
294 PRK05329 anaerobic glycerol-3- 97.1 0.00062 1.3E-08 73.2 4.9 34 77-110 2-35 (422)
295 TIGR01423 trypano_reduc trypan 97.0 0.0058 1.3E-07 67.5 12.7 100 77-246 187-290 (486)
296 PRK07846 mycothione reductase; 97.0 0.0027 5.8E-08 69.6 10.0 31 77-109 1-31 (451)
297 PRK12835 3-ketosteroid-delta-1 97.0 0.00077 1.7E-08 76.1 5.8 36 76-111 10-45 (584)
298 TIGR01318 gltD_gamma_fam gluta 97.0 0.0008 1.7E-08 74.0 5.6 36 76-111 140-175 (467)
299 PTZ00052 thioredoxin reductase 97.0 0.0067 1.4E-07 67.4 12.9 97 78-245 183-279 (499)
300 TIGR02732 zeta_caro_desat caro 97.0 0.00062 1.3E-08 75.1 4.7 33 79-111 1-33 (474)
301 COG1252 Ndh NADH dehydrogenase 97.0 0.0034 7.3E-08 66.4 9.8 34 77-110 3-38 (405)
302 TIGR03385 CoA_CoA_reduc CoA-di 97.0 0.0062 1.3E-07 66.4 12.3 98 77-245 137-234 (427)
303 PRK08010 pyridine nucleotide-d 97.0 0.008 1.7E-07 65.8 13.1 99 77-246 158-256 (441)
304 PLN02676 polyamine oxidase 97.0 0.0008 1.7E-08 74.3 5.2 55 191-245 225-287 (487)
305 PRK13512 coenzyme A disulfide 97.0 0.0056 1.2E-07 66.9 11.8 34 77-110 148-181 (438)
306 TIGR02462 pyranose_ox pyranose 97.0 0.00077 1.7E-08 74.5 4.9 35 78-112 1-35 (544)
307 PRK02106 choline dehydrogenase 97.0 0.00084 1.8E-08 75.8 5.3 36 75-110 3-39 (560)
308 COG0493 GltD NADPH-dependent g 97.0 0.0013 2.7E-08 71.3 6.4 36 76-111 122-157 (457)
309 TIGR02374 nitri_red_nirB nitri 97.0 0.0027 5.8E-08 74.4 9.5 41 203-245 69-109 (785)
310 COG0446 HcaD Uncharacterized N 97.0 0.0074 1.6E-07 65.2 12.4 100 77-245 136-238 (415)
311 PRK12809 putative oxidoreducta 97.0 0.0011 2.3E-08 76.0 6.0 36 76-111 309-344 (639)
312 TIGR01438 TGR thioredoxin and 96.9 0.0079 1.7E-07 66.5 12.6 97 78-245 181-280 (484)
313 TIGR01423 trypano_reduc trypan 96.9 0.00085 1.8E-08 74.1 4.8 34 76-109 2-36 (486)
314 PRK12770 putative glutamate sy 96.9 0.0012 2.6E-08 69.9 5.6 36 76-111 17-52 (352)
315 KOG1335 Dihydrolipoamide dehyd 96.9 0.0064 1.4E-07 62.1 10.2 35 76-110 38-72 (506)
316 COG3573 Predicted oxidoreducta 96.9 0.0013 2.8E-08 65.7 5.0 37 75-111 3-39 (552)
317 PRK14694 putative mercuric red 96.9 0.01 2.2E-07 65.5 12.7 98 77-246 178-275 (468)
318 PTZ00153 lipoamide dehydrogena 96.8 0.0095 2.1E-07 67.8 12.2 34 77-110 312-345 (659)
319 PRK14727 putative mercuric red 96.8 0.014 3E-07 64.7 13.2 99 77-247 188-286 (479)
320 TIGR02061 aprA adenosine phosp 96.8 0.0011 2.4E-08 74.8 4.6 33 79-111 1-37 (614)
321 COG2907 Predicted NAD/FAD-bind 96.8 0.001 2.2E-08 67.0 3.7 34 76-110 7-40 (447)
322 PTZ00058 glutathione reductase 96.8 0.013 2.7E-07 65.8 12.7 99 77-245 237-337 (561)
323 COG1053 SdhA Succinate dehydro 96.8 0.0015 3.2E-08 72.8 5.1 38 75-112 4-41 (562)
324 TIGR01317 GOGAT_sm_gam glutama 96.8 0.0017 3.6E-08 71.8 5.5 36 76-111 142-177 (485)
325 KOG0245 Kinesin-like protein [ 96.8 0.004 8.7E-08 70.5 8.1 80 553-644 476-557 (1221)
326 COG1206 Gid NAD(FAD)-utilizing 96.8 0.0073 1.6E-07 60.5 9.1 35 77-111 3-37 (439)
327 PRK12771 putative glutamate sy 96.7 0.0022 4.7E-08 72.5 6.3 36 76-111 136-171 (564)
328 PRK09564 coenzyme A disulfide 96.7 0.019 4.1E-07 62.9 13.0 34 77-110 149-182 (444)
329 PRK13748 putative mercuric red 96.6 0.018 3.9E-07 65.3 12.8 98 77-246 270-367 (561)
330 PTZ00318 NADH dehydrogenase-li 96.6 0.017 3.8E-07 62.8 12.0 37 204-244 244-280 (424)
331 KOG0404 Thioredoxin reductase 96.5 0.014 2.9E-07 55.3 8.5 32 78-109 9-40 (322)
332 cd02931 ER_like_FMN Enoate red 96.5 0.00064 1.4E-08 72.4 -0.4 35 11-45 333-367 (382)
333 PRK13984 putative oxidoreducta 96.5 0.0035 7.5E-08 71.6 5.5 37 75-111 281-317 (604)
334 KOG2404 Fumarate reductase, fl 96.5 0.015 3.2E-07 58.1 8.9 32 79-110 11-42 (477)
335 COG1252 Ndh NADH dehydrogenase 96.4 0.012 2.7E-07 62.2 9.0 39 200-243 222-261 (405)
336 PLN03000 amine oxidase 96.4 0.0042 9.2E-08 71.6 5.4 36 76-111 183-218 (881)
337 TIGR03140 AhpF alkyl hydropero 96.4 0.026 5.7E-07 63.0 11.6 33 77-109 352-384 (515)
338 PLN02546 glutathione reductase 96.3 0.037 8E-07 62.1 12.6 34 77-110 252-285 (558)
339 KOG1276 Protoporphyrinogen oxi 96.3 0.0044 9.6E-08 64.3 4.7 35 76-110 10-46 (491)
340 TIGR01663 PNK-3'Pase polynucle 96.3 0.015 3.3E-07 63.9 8.8 83 543-643 25-109 (526)
341 TIGR01810 betA choline dehydro 96.2 0.0036 7.8E-08 70.3 4.0 32 79-110 1-33 (532)
342 COG2509 Uncharacterized FAD-de 96.2 0.04 8.7E-07 58.0 11.2 42 203-244 188-230 (486)
343 COG2303 BetA Choline dehydroge 96.2 0.0044 9.5E-08 69.3 4.4 36 75-110 5-40 (542)
344 KOG1892 Actin filament-binding 96.2 0.011 2.4E-07 66.2 7.1 102 526-643 354-455 (1629)
345 KOG0685 Flavin-containing amin 96.2 0.0064 1.4E-07 64.1 5.0 35 76-110 20-55 (498)
346 PLN02976 amine oxidase 96.1 0.0059 1.3E-07 73.1 5.1 35 76-110 692-726 (1713)
347 KOG1800 Ferredoxin/adrenodoxin 96.1 0.0074 1.6E-07 61.7 4.8 37 77-113 20-58 (468)
348 cd02930 DCR_FMN 2,4-dienoyl-Co 96.1 0.00097 2.1E-08 70.4 -1.6 36 10-45 303-338 (353)
349 KOG2293 Daxx-interacting prote 96.1 0.016 3.5E-07 61.4 7.3 87 544-643 442-531 (547)
350 PLN02785 Protein HOTHEAD 96.0 0.0078 1.7E-07 67.9 5.3 35 75-110 53-87 (587)
351 KOG0399 Glutamate synthase [Am 96.0 0.007 1.5E-07 69.3 4.7 36 76-111 1784-1819(2142)
352 KOG1335 Dihydrolipoamide dehyd 95.9 0.035 7.6E-07 56.9 8.8 100 77-246 211-316 (506)
353 KOG0042 Glycerol-3-phosphate d 95.9 0.0044 9.5E-08 66.0 2.4 38 74-111 64-101 (680)
354 PRK10262 thioredoxin reductase 95.8 0.093 2E-06 54.8 12.2 34 77-110 146-179 (321)
355 KOG1336 Monodehydroascorbate/f 95.8 0.071 1.5E-06 56.6 10.6 100 77-245 213-314 (478)
356 TIGR01292 TRX_reduct thioredox 95.7 0.1 2.2E-06 53.6 11.5 33 77-109 141-173 (300)
357 KOG3851 Sulfide:quinone oxidor 95.7 0.01 2.2E-07 59.2 3.7 37 74-110 36-74 (446)
358 COG1251 NirB NAD(P)H-nitrite r 95.6 0.033 7.2E-07 62.0 7.7 33 77-109 145-177 (793)
359 PF01210 NAD_Gly3P_dh_N: NAD-d 95.5 0.017 3.7E-07 53.4 4.6 32 79-110 1-32 (157)
360 PRK15317 alkyl hydroperoxide r 95.4 0.11 2.3E-06 58.3 11.2 34 77-110 351-384 (517)
361 KOG4716 Thioredoxin reductase 95.4 0.33 7.2E-06 49.2 13.2 37 75-111 17-53 (503)
362 COG3486 IucD Lysine/ornithine 95.4 0.074 1.6E-06 55.3 8.8 153 74-250 2-163 (436)
363 KOG4254 Phytoene desaturase [C 95.2 0.018 3.8E-07 60.3 3.8 35 75-109 12-46 (561)
364 PF03721 UDPG_MGDP_dh_N: UDP-g 95.2 0.018 4E-07 54.6 3.7 33 78-110 1-33 (185)
365 PF02737 3HCDH_N: 3-hydroxyacy 95.1 0.028 6.1E-07 53.2 4.5 32 79-110 1-32 (180)
366 TIGR03169 Nterm_to_SelD pyridi 94.9 0.24 5.2E-06 52.7 11.6 37 204-244 207-243 (364)
367 COG0569 TrkA K+ transport syst 94.6 0.039 8.4E-07 54.3 4.4 35 78-112 1-35 (225)
368 PRK01438 murD UDP-N-acetylmura 94.4 0.049 1.1E-06 60.4 5.2 34 77-110 16-49 (480)
369 KOG1346 Programmed cell death 94.3 0.11 2.4E-06 53.9 6.8 39 204-242 409-447 (659)
370 PRK02705 murD UDP-N-acetylmura 94.3 0.048 1E-06 60.1 4.8 32 79-110 2-33 (459)
371 PF01593 Amino_oxidase: Flavin 94.2 0.75 1.6E-05 49.6 13.9 44 204-247 225-268 (450)
372 KOG1238 Glucose dehydrogenase/ 94.2 0.047 1E-06 60.2 4.2 39 74-112 54-93 (623)
373 PRK11749 dihydropyrimidine deh 94.1 0.53 1.1E-05 51.8 12.3 33 77-109 273-306 (457)
374 PF02558 ApbA: Ketopantoate re 93.9 0.091 2E-06 48.0 4.9 31 80-110 1-31 (151)
375 PRK06249 2-dehydropantoate 2-r 93.8 0.091 2E-06 54.6 5.3 35 76-110 4-38 (313)
376 PRK06129 3-hydroxyacyl-CoA deh 93.8 0.071 1.5E-06 55.3 4.5 32 79-110 4-35 (308)
377 KOG2960 Protein involved in th 93.6 0.02 4.4E-07 53.7 0.1 36 77-112 76-113 (328)
378 PRK06719 precorrin-2 dehydroge 93.6 0.099 2.1E-06 48.2 4.6 35 74-108 10-44 (157)
379 TIGR02730 carot_isom carotene 93.6 1.8 3.9E-05 48.1 15.5 34 78-111 1-34 (493)
380 PRK14106 murD UDP-N-acetylmura 93.3 0.12 2.6E-06 56.8 5.5 35 76-110 4-38 (450)
381 PRK07819 3-hydroxybutyryl-CoA 93.2 0.12 2.5E-06 53.0 5.0 34 78-111 6-39 (286)
382 PRK08293 3-hydroxybutyryl-CoA 93.0 0.13 2.8E-06 52.8 4.9 33 78-110 4-36 (287)
383 PF00996 GDI: GDP dissociation 93.0 0.11 2.5E-06 55.8 4.6 36 75-110 2-37 (438)
384 COG1004 Ugd Predicted UDP-gluc 93.0 0.11 2.5E-06 54.0 4.4 34 78-111 1-34 (414)
385 PRK07530 3-hydroxybutyryl-CoA 93.0 0.13 2.9E-06 52.8 5.0 33 78-110 5-37 (292)
386 TIGR02734 crtI_fam phytoene de 92.9 8.2 0.00018 43.0 19.6 32 80-111 1-32 (502)
387 TIGR01470 cysG_Nterm siroheme 92.9 0.14 3E-06 49.5 4.8 34 76-109 8-41 (205)
388 PRK07066 3-hydroxybutyryl-CoA 92.7 0.17 3.7E-06 52.4 5.3 33 78-110 8-40 (321)
389 TIGR03377 glycerol3P_GlpA glyc 92.6 13 0.00028 41.6 20.7 61 185-245 123-191 (516)
390 PF13241 NAD_binding_7: Putati 92.6 0.11 2.3E-06 44.2 3.0 34 76-109 6-39 (103)
391 PRK09260 3-hydroxybutyryl-CoA 92.6 0.14 3E-06 52.6 4.4 32 79-110 3-34 (288)
392 PF01262 AlaDh_PNT_C: Alanine 92.4 0.21 4.5E-06 46.7 5.0 35 76-110 19-53 (168)
393 PRK06718 precorrin-2 dehydroge 92.3 0.18 3.9E-06 48.6 4.6 34 76-109 9-42 (202)
394 PRK12810 gltD glutamate syntha 92.3 0.86 1.9E-05 50.3 10.6 33 77-109 281-314 (471)
395 PRK12921 2-dehydropantoate 2-r 92.3 0.16 3.5E-06 52.5 4.6 30 79-108 2-31 (305)
396 PRK05708 2-dehydropantoate 2-r 92.3 0.17 3.8E-06 52.3 4.8 32 78-109 3-34 (305)
397 KOG3923 D-aspartate oxidase [A 92.1 0.15 3.2E-06 50.8 3.7 35 77-111 3-44 (342)
398 PRK11064 wecC UDP-N-acetyl-D-m 92.1 0.17 3.8E-06 54.6 4.7 34 78-111 4-37 (415)
399 PRK06522 2-dehydropantoate 2-r 92.1 0.18 3.9E-06 52.0 4.7 31 79-109 2-32 (304)
400 PRK06035 3-hydroxyacyl-CoA deh 92.0 0.2 4.3E-06 51.5 4.8 33 78-110 4-36 (291)
401 KOG0241 Kinesin-like protein [ 91.9 0.45 9.7E-06 54.0 7.4 103 525-645 441-544 (1714)
402 PRK07233 hypothetical protein; 91.8 8 0.00017 41.9 17.5 33 79-111 1-33 (434)
403 TIGR02354 thiF_fam2 thiamine b 91.8 0.26 5.6E-06 47.5 5.0 35 76-110 20-55 (200)
404 PF00899 ThiF: ThiF family; I 91.6 0.24 5.2E-06 44.3 4.3 35 77-111 2-37 (135)
405 PRK05808 3-hydroxybutyryl-CoA 91.6 0.23 5.1E-06 50.7 4.7 33 78-110 4-36 (282)
406 PF13478 XdhC_C: XdhC Rossmann 91.5 0.21 4.5E-06 44.7 3.7 32 80-111 1-32 (136)
407 PRK04148 hypothetical protein; 91.3 0.23 5E-06 44.0 3.7 32 78-110 18-49 (134)
408 cd05292 LDH_2 A subgroup of L- 91.2 0.28 6E-06 50.8 4.9 32 79-110 2-35 (308)
409 TIGR01372 soxA sarcosine oxida 91.2 1.5 3.3E-05 53.1 11.7 33 77-109 317-350 (985)
410 KOG1336 Monodehydroascorbate/f 91.2 0.84 1.8E-05 48.7 8.3 39 205-246 144-182 (478)
411 PF00743 FMO-like: Flavin-bind 91.1 0.5 1.1E-05 52.8 7.0 36 75-110 181-216 (531)
412 TIGR01316 gltA glutamate synth 91.0 0.27 5.8E-06 53.9 4.8 34 77-110 272-305 (449)
413 PF01488 Shikimate_DH: Shikima 91.0 0.43 9.3E-06 42.8 5.2 35 76-110 11-46 (135)
414 PF02254 TrkA_N: TrkA-N domain 90.9 0.35 7.5E-06 41.9 4.5 32 80-111 1-32 (116)
415 PF13738 Pyr_redox_3: Pyridine 90.9 0.28 6.1E-06 47.1 4.3 35 76-110 166-200 (203)
416 cd01080 NAD_bind_m-THF_DH_Cycl 90.7 0.4 8.6E-06 44.7 4.9 35 75-109 42-77 (168)
417 PRK08229 2-dehydropantoate 2-r 90.7 0.31 6.7E-06 51.3 4.8 32 78-109 3-34 (341)
418 PRK12831 putative oxidoreducta 90.7 0.31 6.8E-06 53.6 5.0 35 76-110 280-314 (464)
419 TIGR03143 AhpF_homolog putativ 90.6 0.3 6.5E-06 55.1 4.8 34 77-110 143-176 (555)
420 TIGR01763 MalateDH_bact malate 90.5 0.35 7.5E-06 50.0 4.8 32 78-109 2-34 (305)
421 TIGR00518 alaDH alanine dehydr 90.5 0.36 7.8E-06 51.3 5.0 35 76-110 166-200 (370)
422 PRK15116 sulfur acceptor prote 90.5 0.41 8.9E-06 48.1 5.1 35 76-110 29-64 (268)
423 PLN02545 3-hydroxybutyryl-CoA 90.4 0.37 8.1E-06 49.6 5.0 33 78-110 5-37 (295)
424 PRK14619 NAD(P)H-dependent gly 90.4 0.41 9E-06 49.6 5.3 34 77-110 4-37 (308)
425 TIGR03026 NDP-sugDHase nucleot 90.4 0.29 6.2E-06 53.1 4.2 33 79-111 2-34 (411)
426 PRK06130 3-hydroxybutyryl-CoA 90.4 0.38 8.2E-06 49.9 5.0 33 78-110 5-37 (311)
427 KOG2495 NADH-dehydrogenase (ub 90.3 1 2.2E-05 47.4 7.8 95 79-245 220-330 (491)
428 PRK12770 putative glutamate sy 90.2 0.37 8E-06 51.0 4.9 33 78-110 173-206 (352)
429 PRK14620 NAD(P)H-dependent gly 90.2 0.37 8E-06 50.4 4.8 32 79-110 2-33 (326)
430 PRK00066 ldh L-lactate dehydro 90.2 0.5 1.1E-05 49.0 5.7 35 75-109 4-40 (315)
431 PF00056 Ldh_1_N: lactate/mala 90.2 0.54 1.2E-05 42.5 5.2 33 78-110 1-36 (141)
432 PRK14618 NAD(P)H-dependent gly 90.1 0.44 9.5E-06 49.9 5.3 33 78-110 5-37 (328)
433 PTZ00082 L-lactate dehydrogena 90.0 0.53 1.1E-05 49.0 5.7 35 76-110 5-40 (321)
434 PRK09424 pntA NAD(P) transhydr 89.8 0.37 8E-06 53.0 4.5 34 77-110 165-198 (509)
435 PRK12475 thiamine/molybdopteri 89.6 0.48 1E-05 49.6 5.1 35 76-110 23-58 (338)
436 TIGR02733 desat_CrtD C-3',4' d 89.5 16 0.00034 40.6 17.3 56 190-245 232-295 (492)
437 cd00401 AdoHcyase S-adenosyl-L 89.2 0.54 1.2E-05 50.3 5.1 34 77-110 202-235 (413)
438 PRK00094 gpsA NAD(P)H-dependen 88.9 0.54 1.2E-05 49.1 4.9 32 79-110 3-34 (325)
439 PRK07417 arogenate dehydrogena 88.9 0.51 1.1E-05 48.1 4.5 32 79-110 2-33 (279)
440 TIGR02356 adenyl_thiF thiazole 88.7 0.69 1.5E-05 44.6 5.0 35 76-110 20-55 (202)
441 PF03446 NAD_binding_2: NAD bi 88.6 0.61 1.3E-05 43.3 4.5 34 78-111 2-35 (163)
442 PRK15057 UDP-glucose 6-dehydro 88.4 0.54 1.2E-05 50.3 4.5 32 79-111 2-33 (388)
443 PLN02976 amine oxidase 88.4 40 0.00087 42.0 20.0 48 191-241 937-994 (1713)
444 PRK02472 murD UDP-N-acetylmura 88.4 0.65 1.4E-05 50.9 5.3 34 77-110 5-38 (447)
445 PRK07688 thiamine/molybdopteri 88.4 0.67 1.4E-05 48.6 5.1 35 76-110 23-58 (339)
446 cd01075 NAD_bind_Leu_Phe_Val_D 88.4 0.83 1.8E-05 44.0 5.4 34 76-109 27-60 (200)
447 COG1748 LYS9 Saccharopine dehy 88.4 0.61 1.3E-05 49.2 4.7 34 78-111 2-36 (389)
448 PRK08268 3-hydroxy-acyl-CoA de 88.3 0.65 1.4E-05 51.6 5.1 34 78-111 8-41 (507)
449 TIGR01915 npdG NADPH-dependent 88.2 0.67 1.5E-05 45.3 4.7 32 79-110 2-34 (219)
450 PRK04308 murD UDP-N-acetylmura 88.2 0.75 1.6E-05 50.4 5.6 34 77-110 5-38 (445)
451 PRK06223 malate dehydrogenase; 88.1 0.69 1.5E-05 47.9 5.0 33 78-110 3-36 (307)
452 TIGR03862 flavo_PP4765 unchara 88.1 2.7 5.8E-05 44.6 9.4 54 189-244 85-141 (376)
453 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.0 0.58 1.3E-05 51.8 4.5 34 78-111 6-39 (503)
454 cd01487 E1_ThiF_like E1_ThiF_l 87.9 0.77 1.7E-05 43.1 4.6 32 79-110 1-33 (174)
455 TIGR02964 xanthine_xdhC xanthi 87.9 0.78 1.7E-05 45.7 4.9 35 77-111 100-134 (246)
456 cd05291 HicDH_like L-2-hydroxy 87.8 0.73 1.6E-05 47.7 4.9 32 79-110 2-35 (306)
457 PLN02353 probable UDP-glucose 87.8 0.62 1.3E-05 51.1 4.5 34 78-111 2-37 (473)
458 TIGR03467 HpnE squalene-associ 87.8 11 0.00025 40.4 14.6 41 204-244 213-254 (419)
459 PRK07531 bifunctional 3-hydrox 87.7 0.62 1.4E-05 51.7 4.6 32 79-110 6-37 (495)
460 PRK01710 murD UDP-N-acetylmura 87.7 0.69 1.5E-05 50.9 4.9 33 78-110 15-47 (458)
461 PRK07502 cyclohexadienyl dehyd 87.6 0.8 1.7E-05 47.4 5.1 33 78-110 7-41 (307)
462 TIGR02355 moeB molybdopterin s 87.4 0.87 1.9E-05 45.2 5.0 35 76-110 23-58 (240)
463 cd01483 E1_enzyme_family Super 87.3 0.95 2.1E-05 40.9 4.8 32 79-110 1-33 (143)
464 PF06100 Strep_67kDa_ant: Stre 87.3 0.67 1.5E-05 50.0 4.3 35 77-111 2-40 (500)
465 PRK08306 dipicolinate synthase 87.2 0.91 2E-05 46.7 5.1 35 76-110 151-185 (296)
466 PRK12549 shikimate 5-dehydroge 87.0 0.93 2E-05 46.3 5.1 33 77-109 127-160 (284)
467 cd01078 NAD_bind_H4MPT_DH NADP 87.0 1 2.2E-05 43.1 5.1 33 77-109 28-61 (194)
468 PF01593 Amino_oxidase: Flavin 87.0 0.59 1.3E-05 50.4 3.9 32 363-397 418-449 (450)
469 PF10727 Rossmann-like: Rossma 86.9 0.44 9.6E-06 42.0 2.3 34 75-108 8-41 (127)
470 PRK08644 thiamine biosynthesis 86.9 0.98 2.1E-05 43.9 4.9 35 76-110 27-62 (212)
471 PRK05690 molybdopterin biosynt 86.8 1 2.2E-05 44.9 5.0 35 76-110 31-66 (245)
472 COG0686 Ald Alanine dehydrogen 86.8 0.56 1.2E-05 47.2 3.1 35 76-110 167-201 (371)
473 PLN02695 GDP-D-mannose-3',5'-e 86.8 1.2 2.5E-05 47.6 5.9 36 75-110 19-55 (370)
474 cd05293 LDH_1 A subgroup of L- 86.7 1 2.3E-05 46.6 5.3 34 77-110 3-38 (312)
475 PTZ00117 malate dehydrogenase; 86.7 1 2.2E-05 46.9 5.2 35 76-110 4-39 (319)
476 COG5044 MRS6 RAB proteins gera 86.6 0.99 2.2E-05 46.5 4.8 36 76-111 5-40 (434)
477 KOG0405 Pyridine nucleotide-di 86.6 0.93 2E-05 46.3 4.6 35 75-109 18-52 (478)
478 cd05191 NAD_bind_amino_acid_DH 86.6 1.6 3.5E-05 35.5 5.3 33 76-108 22-55 (86)
479 TIGR00936 ahcY adenosylhomocys 86.5 0.92 2E-05 48.5 4.8 35 76-110 194-228 (406)
480 PRK03369 murD UDP-N-acetylmura 86.5 0.93 2E-05 50.3 5.1 32 78-109 13-44 (488)
481 COG0771 MurD UDP-N-acetylmuram 86.4 0.8 1.7E-05 49.4 4.3 36 77-112 7-42 (448)
482 PF00670 AdoHcyase_NAD: S-aden 86.3 1.1 2.3E-05 41.2 4.4 34 77-110 23-56 (162)
483 PLN02576 protoporphyrinogen ox 86.1 32 0.00069 38.1 17.2 51 191-241 240-294 (496)
484 COG3486 IucD Lysine/ornithine 85.9 9.1 0.0002 40.4 11.4 47 204-250 294-346 (436)
485 TIGR01505 tartro_sem_red 2-hyd 85.8 0.88 1.9E-05 46.7 4.2 32 79-110 1-32 (291)
486 cd00757 ThiF_MoeB_HesA_family 85.7 1.2 2.7E-05 43.8 5.0 34 77-110 21-55 (228)
487 PRK11730 fadB multifunctional 85.7 0.9 1.9E-05 52.8 4.6 34 78-111 314-347 (715)
488 PRK00683 murD UDP-N-acetylmura 85.6 1 2.2E-05 48.9 4.8 33 78-110 4-36 (418)
489 PRK00141 murD UDP-N-acetylmura 85.4 1.1 2.5E-05 49.3 5.1 33 77-109 15-47 (473)
490 PRK12778 putative bifunctional 85.4 0.93 2E-05 53.3 4.6 34 77-110 570-604 (752)
491 TIGR00561 pntA NAD(P) transhyd 85.4 1.1 2.4E-05 49.3 4.8 34 77-110 164-197 (511)
492 TIGR02853 spore_dpaA dipicolin 85.4 1.2 2.7E-05 45.4 5.0 35 76-110 150-184 (287)
493 PRK09496 trkA potassium transp 85.4 0.94 2E-05 49.7 4.5 33 79-111 2-34 (453)
494 TIGR02437 FadB fatty oxidation 85.3 0.97 2.1E-05 52.4 4.6 36 76-111 312-347 (714)
495 cd01339 LDH-like_MDH L-lactate 85.1 1 2.3E-05 46.4 4.4 31 80-110 1-32 (300)
496 PRK05476 S-adenosyl-L-homocyst 85.0 1.3 2.8E-05 47.7 5.1 35 76-110 211-245 (425)
497 cd00755 YgdL_like Family of ac 85.0 1.4 3E-05 43.4 5.0 34 77-110 11-45 (231)
498 TIGR03736 PRTRC_ThiF PRTRC sys 84.9 1.4 3.1E-05 43.6 4.9 35 76-110 10-55 (244)
499 PRK08328 hypothetical protein; 84.9 1.4 3.1E-05 43.5 5.0 34 77-110 27-61 (231)
500 PRK05562 precorrin-2 dehydroge 84.8 1.2 2.5E-05 43.5 4.2 35 74-108 22-56 (223)
No 1
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=100.00 E-value=3.1e-90 Score=759.72 Aligned_cols=661 Identities=70% Similarity=1.174 Sum_probs=549.7
Q ss_pred CccccCccCCCCcccc--ccCCCCCccccCCcccccccccccccccccccccCCCcccccccccccCCCCCCC----CCC
Q 006025 1 MVSSMFYNSVNLSTAV--FSRTHFPVPVYKHSCIEFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAESPTNNS----DSE 74 (664)
Q Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~k~~~~~~~~i~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 74 (664)
|++++|++++|+++++ ++++++|.+.......++.++..|+..+....... .+...++......+.... ...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (668)
T PLN02927 1 MGSTLFCYSINPSPSKLDFTRTHVFSPVAKQFYLDLSSFSGKPGGGLSGFRSR--KALLGVKAATALVEKEEKREAVTEK 78 (668)
T ss_pred CCccccccCCCccchhhhccccCCCCcccccchhhhccccccCccccccccch--hhhcchhhhhhhccccccccccccc
Confidence 8999999999999999 99999999999999999999999886433222211 222223333222111111 123
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
.++.+|+||||||+||++|+.|+++|++|+||||.+...+..|.+++++.++++++++|+.+++++.+++...+......
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 45689999999999999999999999999999997644444454555789999999999999776788887776544334
Q ss_pred ccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEecc
Q 006025 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (664)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ad 234 (664)
+..+.++..+.+...++...+....+.+..+.|+|..|++.|.+.++...++++++|++++.++++|+|++++|+++++|
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aD 238 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGD 238 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcC
Confidence 43334444455555555433233345666789999999999999887777788999999999999999999999999999
Q ss_pred EEEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCCCCCCC
Q 006025 235 LLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVD 314 (664)
Q Consensus 235 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (664)
+||+|||++|.+|+.+++...+.|.++.+|+++.+..+.+.....+..+.++..+++.++..++.+.|+.+...+.....
T Consensus 239 lVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~ 318 (668)
T PLN02927 239 LLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGAD 318 (668)
T ss_pred EEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccccc
Confidence 99999999999999997777788999999998877655444444456677888888888877777888777665533223
Q ss_pred CCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHHHHHH
Q 006025 315 GPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLA 394 (664)
Q Consensus 315 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da~~La 394 (664)
......+.+.+.|..|++.+.+++...+...+..+.++.+.+..+|..|||+|+|||||.|+|+.|||+|+||+||..|+
T Consensus 319 ~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La 398 (668)
T PLN02927 319 APNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLA 398 (668)
T ss_pred cchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHH
Confidence 34456788889999999998888876665556677888887778999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccCCCccccee
Q 006025 395 VELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRF 474 (664)
Q Consensus 395 ~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 474 (664)
++|..+++.....+.+.++..+|+.|+++|++++..++..+++...++..++.+.+.++.|+.+++.++++.+.+..+|+
T Consensus 399 ~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~~~~~~~~~~ 478 (668)
T PLN02927 399 LELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAIIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVGGRF 478 (668)
T ss_pred HHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCCCceeeee
Confidence 99998765432233345678999999999999999999999999999998877778888999999999999999999999
Q ss_pred eeehhhhhhHHhhhcCCCCCCCCCCCccccCcchhhHHHhhhccChhhhhhcCCcEEEEecCCCCCCCCCeEEeeccCCC
Q 006025 475 FIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENE 554 (664)
Q Consensus 475 l~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~ 554 (664)
+++.+|+.||.|+.+.+.+.|+|+...|.++|++++++++|..++++.+++.++.|+|++.++++..+++|.|. ++++.
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~l~-~~~~~ 557 (668)
T PLN02927 479 FVDIAMPLMLDWVLGGNSEKLEGRPPSCRLTDKADDRLREWFEDDDALERTIKGEWYLIPHGDDCCVSETLCLT-KDEDQ 557 (668)
T ss_pred eeecccHHHhhhhhcCCccccCCCCCccccccchhHHHHHHhcccHHHHHhhcCCeEEEecCCCCcccceeeee-cCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999997 78899
Q ss_pred CEEecCCCCCCCCcceeEeCCCcccccceEEEEECCEEEEEECCCCceeEEeCCCCceeecCCCCcEEeCCCCEEEECCC
Q 006025 555 PYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSD 634 (664)
Q Consensus 555 ~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~~~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~g~~ 634 (664)
+++|||.++++.++..|+|+++.||+.||+|.++++.|+|+||+|+||||||++.++++++.|+.++.|++||+|+||+.
T Consensus 558 p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~I~~g~~ 637 (668)
T PLN02927 558 PCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIEFGSD 637 (668)
T ss_pred CeEecCCCCcCCCCceEEecCCccChhHeEEEEECCEEEEEECCCCCccEEeCCCCceEecCCCCceEeCCCCEEEeCCC
Confidence 99999999977777778999999999999999999999999999999999999988888899999999999999999998
Q ss_pred ceeEEEEEEecCCCCCccccccc-ccccccC
Q 006025 635 KKAIFRVKVIGTPPNNNSERKEA-GEILQAV 664 (664)
Q Consensus 635 ~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~ 664 (664)
+...|+++...++|..+.++++. .++||+|
T Consensus 638 ~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (668)
T PLN02927 638 KKAAFRVKVIRKTPKSTRKNESNNDKLLQTA 668 (668)
T ss_pred cceeEEEEeecCCCcchhhcccchhhhhhcC
Confidence 76679999999999887333332 6899986
No 2
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.3e-42 Score=368.71 Aligned_cols=364 Identities=17% Similarity=0.159 Sum_probs=244.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
+||+||||||+|+++|+.|++.|++|+|+|+.+...........++.++++++++|+.+ |+|+.+...+.. ...+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~-~~~~~- 77 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSI--DIWEELEKFVAE-MQDIY- 77 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHC--CcHHHHHhhcCC-CcEEE-
Confidence 68999999999999999999999999999987432111111124688999999999999 788888654432 12222
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEeeCCeEEEEEcCCcEEecc
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ad 234 (664)
+.+. .+.....++.. ...++++.++|..|++.|.+++.. ..++++++++++.+++++++|+++++ +++||
T Consensus 78 ~~~~-~g~~~~~~~~~-----~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~-~~~ad 150 (374)
T PRK06617 78 VVDN-KASEILDLRND-----ADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDK-QIKCN 150 (374)
T ss_pred EEEC-CCceEEEecCC-----CCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCC-EEeeC
Confidence 2222 23333444321 123457899999999999987633 35778999999999889999999876 89999
Q ss_pred EEEEecCCchhhhhhhcCC-CCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCe-EEEEEEeeCCCCC
Q 006025 235 LLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKEPAGG 312 (664)
Q Consensus 235 lvVgADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 312 (664)
+||||||.+|.||+.++.. ..+.| + .++....... .......++.|...+. +...|..++. ..+++... +...
T Consensus 151 lvIgADG~~S~vR~~l~~~~~~~~y-~-~~~~~~v~~~-~~~~~~~~~~~~~~g~-~~~lPl~~~~~~~~vw~~~-~~~~ 225 (374)
T PRK06617 151 LLIICDGANSKVRSHYFANEIEKPY-Q-TALTFNIKHE-KPHENCAMEHFLPLGP-FALLPLKDQYASSVIWSTS-SDQA 225 (374)
T ss_pred EEEEeCCCCchhHHhcCCCcccccC-C-eEEEEEEecc-CCCCCEEEEEecCCCC-EEEeECCCCCeEEEEEeCC-HHHH
Confidence 9999999999999988433 34556 2 3444333221 1222224555555555 4445666554 23333221 1000
Q ss_pred CCCCcchHHHHHHHHhCCChhHHHHHHcCC-ccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHHH
Q 006025 313 VDGPEGKKERLLKIFEGWCDNVVDLILATD-EEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGY 391 (664)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da~ 391 (664)
........+.+.+.+..... ..+.... ......+++... ...+|+++||+|+|||||.++|++|||+|+||+||.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~Da~ 301 (374)
T PRK06617 226 ALIVNLPVEEVRFLTQRNAG---NSLGKITIDSEISSFPLKAR-IANRYFHNRIVLIADTAHTVHPLAGQGLNQGIKDIE 301 (374)
T ss_pred HHHHcCCHHHHHHHHHHhhc---hhcCceeeccceeEEEeeee-eccceecCCEEEEEcccccCCCCccccHHHHHHHHH
Confidence 00000001222222221111 1111111 111333445444 567899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccCCCccc
Q 006025 392 QLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 471 (664)
Q Consensus 392 ~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 471 (664)
+|+++|.. ..+|++|+++|++++..++.++.. +..+|+++..++..+|+.++..++.++
T Consensus 302 ~La~~L~~--------------~~~L~~Ye~~R~~~~~~~~~~t~~-------l~~~f~~~~~~~~~~R~~~l~~~~~~~ 360 (374)
T PRK06617 302 ILSMIVSN--------------NGTLQEYQKLRQEDNFIMYKLTDE-------LNNIFSNYSKNLRCLRQIGFKVINNFK 360 (374)
T ss_pred HHHHHHcC--------------cchHHHHHHHHhHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHHHHhcCH
Confidence 99998831 158999999999999977665543 556778788889999999999999877
Q ss_pred --ceeeeehhhhh
Q 006025 472 --GRFFIDLAMPL 482 (664)
Q Consensus 472 --~~~l~~~~~g~ 482 (664)
|++|++++||.
T Consensus 361 ~~k~~~~~~~~g~ 373 (374)
T PRK06617 361 PIKNLITSYAMGK 373 (374)
T ss_pred HHHHHHHHHhcCC
Confidence 58999988863
No 3
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=355.17 Aligned_cols=354 Identities=30% Similarity=0.445 Sum_probs=253.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
++|+||||||+|+++|+.|+++|++|+|+||++.+.. .+ .++.+.+++++.|+.+ |+++.+...+... ..+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~-~g---~gi~l~~~~~~~L~~~--gl~~~~~~~~~~~-~~~~- 72 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKE-VG---AGIGIGDNVIKKLGNH--DLAKGIKNAGQIL-STMN- 72 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccc-cc---cceeeChHHHHHHHhc--ChHHHHHhcCCcc-ccee-
Confidence 3799999999999999999999999999999875432 22 3688999999999999 7888876654322 1211
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEE
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvV 237 (664)
+.+. .+......+. . ..+..+.++|..|++.|.+.+....++++++|++++.++++++|++++|+++++|+||
T Consensus 73 ~~~~-~g~~~~~~~~-----~-~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vi 145 (373)
T PRK06753 73 LLDD-KGTLLNKVKL-----K-SNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCI 145 (373)
T ss_pred EEcC-CCCEEeeccc-----c-cCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEE
Confidence 1221 1222111111 1 1123568999999999999887666889999999998888999999999999999999
Q ss_pred EecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCCCCCCCCCc
Q 006025 238 GADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPE 317 (664)
Q Consensus 238 gADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (664)
||||.+|.||+.+.......|.++.++.+................+ ..+..+..+|..++...|+..............
T Consensus 146 gadG~~S~vR~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T PRK06753 146 GADGIHSKVRQSVNADSKVRYQGYTCFRGLIDDIDLKLPDCAKEYW-GTKGRFGIVPLLNNQAYWFITINAKERDPKYSS 224 (373)
T ss_pred ECCCcchHHHHHhCCCCCceEcceEEEEEEeccccccCccceEEEE-cCCCEEEEEEcCCCeEEEEEEeccccCCccccc
Confidence 9999999999998655556677767776654322111111222333 444455666777777777765432221111122
Q ss_pred chHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHHHHHHHHH
Q 006025 318 GKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 397 (664)
Q Consensus 318 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da~~La~~L 397 (664)
...+.+.+.|..|.+.+.+.+.......+..+.++...+..+|..+|++|||||||.|+|+.|||+|+||+||..|++.|
T Consensus 225 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L 304 (373)
T PRK06753 225 FGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCL 304 (373)
T ss_pred ccHHHHHHHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHh
Confidence 34567788888998887777655543333444555556677899999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeeccc
Q 006025 398 EKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (664)
Q Consensus 398 ~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (664)
... +..++|+.|+++|++++..++..++.+.. ++.....+...+|+..+.
T Consensus 305 ~~~-----------~~~~al~~Y~~~r~~~~~~~~~~s~~~~~-------~~~~~~~~~~~~r~~~l~ 354 (373)
T PRK06753 305 NAY-----------DFEKALQRYDKIRVKHTAKVIKRSRKIGK-------IAQIESKLLVALRNRVMK 354 (373)
T ss_pred hhc-----------cHHHHHHHHHHHhhHHHHHHHHHHHHHhH-------HHhcCCchHHHHHHHHHH
Confidence 531 35789999999999999998888765332 233334455667776653
No 4
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=2.7e-41 Score=363.85 Aligned_cols=378 Identities=17% Similarity=0.198 Sum_probs=242.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCC--cccceeeCchHHHHHHhcChhHHHHHHHhccccCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ--YRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~--~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~ 153 (664)
..+||+||||||+|+++|+.|+++|++|+|+|+.+.+....+. ......++++++++|+++ |+++++...+.....
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~l--Gl~~~~~~~~~~~~~ 79 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRL--GVWQDILARRASCYH 79 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHc--CCchhhhhhcCcccc
Confidence 3589999999999999999999999999999998654322221 112456899999999999 788888664322222
Q ss_pred cccccccCCCCceeeeccCCCcccccCCC-eEEeeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEeeCCeEEEEEcCCc
Q 006025 154 RINGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQ 229 (664)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~~g~ 229 (664)
.+. +++.... ....++. ...+.+ .++.++|..|++.|.+++.. ..++++++|++++++++++++++.+|+
T Consensus 80 ~~~-~~~~~~~-~~~~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~ 153 (400)
T PRK08013 80 GME-VWDKDSF-GRIAFDD----QSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGS 153 (400)
T ss_pred EEE-EEeCCCC-ceEEEcc----cccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCC
Confidence 222 2222111 1122221 112232 35789999999999987633 468889999999998899999999999
Q ss_pred EEeccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCe-EEEEEEee
Q 006025 230 CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHK 307 (664)
Q Consensus 230 ~i~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 307 (664)
+++||+||||||++|.||+.+. ......|.+.. +....... .......+..|.+.+ .+..+|..++. ..|++...
T Consensus 154 ~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~-~~~~v~~~-~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~ 230 (400)
T PRK08013 154 MLTARLVVGADGANSWLRNKADIPLTFWDYQHHA-LVATIRTE-EPHDAVARQVFHGDG-ILAFLPLSDPHLCSIVWSLS 230 (400)
T ss_pred EEEeeEEEEeCCCCcHHHHHcCCCccccccCcEE-EEEEEecc-CCCCCEEEEEEcCCC-CEEEEECCCCCeEEEEEEcC
Confidence 9999999999999999999984 33445555533 33332221 111222344555555 44455655443 33333221
Q ss_pred CCCCCCCCCcchHHHHHHHHh-CCChhHHHHHHcCCc-cceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhH
Q 006025 308 EPAGGVDGPEGKKERLLKIFE-GWCDNVVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (664)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ 385 (664)
.... ........+.+.+.+. .|.+ .+..... .....+++... ...+|+.+||+|+|||||.++|++|||+|+
T Consensus 231 ~~~~-~~~~~~~~~~~~~~l~~~~~~----~l~~~~~~~~~~~~~l~~~-~~~~~~~grv~LiGDAAH~~~P~~GQG~n~ 304 (400)
T PRK08013 231 PEEA-QRMQQAPEEEFNRALAIAFDN----RLGLCELESERQVFPLTGR-YARQFAAHRLALVGDAAHTIHPLAGQGVNL 304 (400)
T ss_pred HHHH-HHHHcCCHHHHHHHHHHHHhH----hhCceEecCCccEEeccee-ecccccCCcEEEEechhhcCCccccCchhh
Confidence 1000 0000011122222221 1111 1100000 00011222222 356899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeeccc
Q 006025 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (664)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (664)
||+||.+|+++|...+..+ .+.....+|+.|+++|++++..++..++. +..+|.+...+...+|++.+.
T Consensus 305 gi~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~R~~~l~ 373 (400)
T PRK08013 305 GFMDAAELIAELRRLHRQG----KDIGQHLYLRRYERSRKHSAALMLAGMQG-------FRDLFAGNNPAKKLLRDIGLK 373 (400)
T ss_pred hHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHH
Confidence 9999999999999876432 11222468999999999999876654432 344566666778889998888
Q ss_pred CCCccc--ceeeeehhhh
Q 006025 466 HPGRVG--GRFFIDLAMP 481 (664)
Q Consensus 466 ~~~~~~--~~~l~~~~~g 481 (664)
.++.++ ++++++++||
T Consensus 374 ~~~~~~~~~~~~~~~~~g 391 (400)
T PRK08013 374 LADTLPGVKPQLIRQAMG 391 (400)
T ss_pred HHhhCHHHHHHHHHHHcc
Confidence 776665 4777777776
No 5
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=6.9e-41 Score=358.58 Aligned_cols=361 Identities=25% Similarity=0.288 Sum_probs=238.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
.+||+||||||+||++|+.|+++|++|+|+|+.+......+ .++.++++++++|+++ |+.+.+...+........
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~---r~~~l~~~~~~~L~~l--G~~~~i~~~~~~~~~~~~ 76 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERG---RGIALSPNALRALERL--GLWDRLEALGVPPLHVMV 76 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCc---eeeeecHhHHHHHHHc--CChhhhhhccCCceeeEE
Confidence 47999999999999999999999999999999833333333 4788999999999999 565777665543333222
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEeeCCeEEEEEc-CCcEEe
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLE-NGQCYA 232 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~-~g~~i~ 232 (664)
+.++.. ....++... ..+.+.++++.|..|.+.|.+++.. ..++++++|+.++.+++.++++++ ||++++
T Consensus 77 -~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~ 150 (387)
T COG0654 77 -VDDGGR--RLLIFDAAE---LGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLD 150 (387)
T ss_pred -EecCCc--eeEEecccc---cCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEe
Confidence 222211 234444321 1125567899999999999998732 468899999999999999999999 999999
Q ss_pred ccEEEEecCCchhhhhhhc-CCCCc-cccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCC--CCeEEEEEEeeC
Q 006025 233 GDLLIGADGIWSKVRKNLF-GPQEA-IYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVG--AGKMQWYAFHKE 308 (664)
Q Consensus 233 adlvVgADG~~S~vR~~l~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 308 (664)
|||||||||.+|.||+.+. ..... .|.+.. +....... .+.....+..+...+ .+...|.. .....|+.....
T Consensus 151 a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~-l~~~~~~~-~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~ 227 (387)
T COG0654 151 ADLLVGADGANSAVRRAAGIAEFSGRDYGQTA-LVANVEPE-EPHEGRAGERFTHAG-PFALLPLPDNRSSVVWSLPPGP 227 (387)
T ss_pred cCEEEECCCCchHHHHhcCCCCccCCCCCceE-EEEEeecC-CCCCCeEEEEecCCC-ceEEEecCCCceeEEEECChhh
Confidence 9999999999999999996 33333 555432 22222211 233334444444444 44444555 333444432111
Q ss_pred CCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCcc-ceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHH
Q 006025 309 PAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (664)
Q Consensus 309 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al 387 (664)
... ......+.+...+....+.... +...... .....++ ......+|..+|++|+|||||+++|++|||+|+||
T Consensus 228 --~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~pl-~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nlgl 302 (387)
T COG0654 228 --AED-LQGLSDEEFLRELQRRLGERDP-LGRVTLVSSRSAFPL-SLRVAERYRRGRVVLIGDAAHAMHPLAGQGANLAL 302 (387)
T ss_pred --HHH-HhcCCHHHHHHHHHHhcCcccc-cceEEEccccccccc-cchhhhheecCcEEEEeeccccCCCccccchhhhh
Confidence 100 0111112222221111111100 1101000 0111111 12334578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccCC
Q 006025 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP 467 (664)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~ 467 (664)
+||.+|+++|.++...+ . + ..+|+.|+++|++++..++.++.. +...|.....+.+.+|+..+...
T Consensus 303 ~Da~~La~~L~~~~~~~----~--~-~~~L~~Y~~~R~~~~~~~~~~s~~-------~~~~~~~~~~~~~~~r~~~l~~~ 368 (387)
T COG0654 303 EDAAALAEALAAAPRPG----A--D-AAALAAYEARRRPRAEAIQKLSRA-------LGRLFSADGPFARFLRNLGLRLL 368 (387)
T ss_pred hhHHHHHHHHHHHhhcC----c--c-HHHHHHHHHhhhhHHHHHHHHHHH-------HhhhhccCCcHHHHHHHHHHHhh
Confidence 99999999999986532 1 1 789999999999999988776652 44567777788889999888776
Q ss_pred Ccc
Q 006025 468 GRV 470 (664)
Q Consensus 468 ~~~ 470 (664)
...
T Consensus 369 ~~~ 371 (387)
T COG0654 369 DRL 371 (387)
T ss_pred ccC
Confidence 554
No 6
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=1.3e-39 Score=350.81 Aligned_cols=356 Identities=25% Similarity=0.347 Sum_probs=247.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
.+|+||||||+|+++|+.|+++|++|+|+||.+... .. +.++.+.++++++|+++ |+++++...+... ..+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~-~~---g~gi~l~~~~~~~L~~~--Gl~~~l~~~~~~~-~~~~- 74 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELS-EV---GAGLQLAPNAMRHLERL--GVADRLSGTGVTP-KALY- 74 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccC-cC---CccceeChhHHHHHHHC--CChHHHhhcccCc-ceEE-
Confidence 589999999999999999999999999999975432 22 23688999999999999 7888887655432 2221
Q ss_pred cccCCCCceeeeccCCCcc-cccCCCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEEEEEc---CCcE
Q 006025 158 LVDGISGSWYIKFDTFTPA-AEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE---NGQC 230 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~---~g~~ 230 (664)
+.++.........+..... ...+.+ ...++|..|++.|.+.+. ...++++++|++++++++++++++. ++++
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~ 153 (400)
T PRK06475 75 LMDGRKARPLLAMQLGDLARKRWHHP-YIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVET 153 (400)
T ss_pred EecCCCcceEEEecchhhhhhcCCCC-ceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcE
Confidence 2333222211111110000 111223 246899999999998863 2358899999999988888888873 3468
Q ss_pred EeccEEEEecCCchhhhhhhcCCCCccccceEEEEEEeccC--CCCc-----cccceEEEecCeeEEEEeeCCCCeEEEE
Q 006025 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFV--PADI-----ESVGYRVFLGHKQYFVSSDVGAGKMQWY 303 (664)
Q Consensus 231 i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (664)
++||+||||||.+|.||+++. .....|.+..+|.+..... +... +......|.+++..++.+|..++...++
T Consensus 154 ~~adlvIgADG~~S~vR~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~~~~~~ 232 (400)
T PRK06475 154 VSAAYLIACDGVWSMLRAKAG-FSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLGNKAHFIAYPVKGGKFFNF 232 (400)
T ss_pred EecCEEEECCCccHhHHhhcC-CCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEcCCCEEEEEEccCCcEEEE
Confidence 999999999999999999983 3556788878887765321 1111 1122345667777888888887765544
Q ss_pred EEeeCCCC--CCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCcc
Q 006025 304 AFHKEPAG--GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQ 381 (664)
Q Consensus 304 ~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~Gq 381 (664)
.....+.. .........+.+.+.+..|.+.+.+.+..... ...++++...+...|..||++|||||||.++|++||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~--~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~P~~Gq 310 (400)
T PRK06475 233 VAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAIDE--WTYWPLFEMADAQFVGPDRTIFLGDASHAVTPFAAQ 310 (400)
T ss_pred EEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcCCc--eeECcCcccCCCcceecCCEEEEecccccCCchhhh
Confidence 43322111 11112234578888999999988887765543 234556655544456789999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceee
Q 006025 382 GGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTK 461 (664)
Q Consensus 382 G~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~ 461 (664)
|+|+||+||..|+++|... +...+|+.|++.|++++..++..+++.. .+.....+.+..|+
T Consensus 311 G~n~aieDa~~La~~L~~~-----------~~~~aL~~Ye~~R~~r~~~~~~~s~~~~--------~~~~~~~~~~~~r~ 371 (400)
T PRK06475 311 GAAMAIEDAAALAEALDSD-----------DQSAGLKRFDSVRKERIAAVAKRGQLNR--------FAYHATGIFALGRN 371 (400)
T ss_pred hHHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhCCCCHHHHHHH
Confidence 9999999999999999531 3468999999999999998887764321 12222345566677
Q ss_pred ecc
Q 006025 462 FRI 464 (664)
Q Consensus 462 ~~l 464 (664)
..+
T Consensus 372 ~~~ 374 (400)
T PRK06475 372 MLF 374 (400)
T ss_pred HHH
Confidence 655
No 7
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=1.7e-40 Score=355.75 Aligned_cols=368 Identities=19% Similarity=0.233 Sum_probs=237.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccc-cCCCCcc-cceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI-RGEGQYR-GPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~-~~~g~~~-~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
.+||+||||||+|+++|+.|+++|++|+|+|+.+... ...+..+ +.+.++++++++|+.+ |+++.+..........
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--G~~~~~~~~~~~~~~~ 80 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESL--GAWSSIVAMRVCPYKR 80 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHC--CCchhhhHhhCCccce
Confidence 4799999999999999999999999999999875321 1221111 2357999999999999 7888886532211122
Q ss_pred ccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhc---CCceEEeCCeEEEEEeeCCeEEEEEcCCcEE
Q 006025 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (664)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i 231 (664)
+. .++.... ...+.... .....+++.+.+..|++.|.+++ +...++++++|++++.++++++|++++|+++
T Consensus 81 ~~-~~~~~~~--~~~~~~~~---~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~ 154 (384)
T PRK08849 81 LE-TWEHPEC--RTRFHSDE---LNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEI 154 (384)
T ss_pred EE-EEeCCCc--eEEecccc---cCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEE
Confidence 22 1111111 12222110 00122357788888999988775 2345888999999999899999999999999
Q ss_pred eccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCC--eEEEEEEeeC
Q 006025 232 AGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG--KMQWYAFHKE 308 (664)
Q Consensus 232 ~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 308 (664)
+||+||+|||.+|.+|+.++ +...+.|.+......+. .. .+.....+..+.+.+...+ .|..++ .+.|+.....
T Consensus 155 ~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~-~~-~~~~~~~~~~~~~~g~~~~-~pl~~~~~~~~~~~~~~~ 231 (384)
T PRK08849 155 EAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVE-TE-QPQQDITWQQFTPSGPRSF-LPLCGNQGSLVWYDSPKR 231 (384)
T ss_pred EeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEE-cC-CCCCCEEEEEeCCCCCEEE-eEcCCCceEEEEECCHHH
Confidence 99999999999999999984 44556676643332221 11 1112234444544443332 344333 3344321000
Q ss_pred CCC-CCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecc--cCCCCccccCCcEEEEccCcCcCCCCCccchhH
Q 006025 309 PAG-GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIY--DRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (664)
Q Consensus 309 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ 385 (664)
... ....++...+.+.+.|..+.. .. ....+..+ ......+|+.||++|+|||||.|+|++|||+|+
T Consensus 232 ~~~~~~~~~~~~~~~l~~~~~~~~~-------~~---~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~ 301 (384)
T PRK08849 232 IKQLSAMNPEQLRSEILRHFPAELG-------EI---KVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNL 301 (384)
T ss_pred HHHHHcCCHHHHHHHHHHHhhhhhC-------cE---EeccceEeeccccccchhccCCEEEEEcccccCCCCccchHhH
Confidence 000 000111122223322322111 11 11122222 233567899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeeccc
Q 006025 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (664)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (664)
||+||.+|+++|... ....+.+|+.|+++|++++..++..+. . +..+|+....++..+|+.++.
T Consensus 302 al~Da~~L~~~l~~~---------~~~~~~~L~~Ye~~R~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~R~~~l~ 365 (384)
T PRK08849 302 GFKDVDVLLAETEKQ---------GVLNDASFARYERRRRPDNLLMQTGMD------L-FYKTFSNSLTPLKFVRNAALK 365 (384)
T ss_pred HHHHHHHHHHHHHhc---------CCCcHHHHHHHHHHHhHHHHHHHHHHH------H-HHHHhcCCchHHHHHHHHHHH
Confidence 999999999988642 123468999999999999986654433 2 445677767788999999999
Q ss_pred CCCccc--ceeeeehhhh
Q 006025 466 HPGRVG--GRFFIDLAMP 481 (664)
Q Consensus 466 ~~~~~~--~~~l~~~~~g 481 (664)
..+.++ |+.|++++||
T Consensus 366 ~~~~~~~~k~~~~~~~~g 383 (384)
T PRK08849 366 LAENSGPLKTQVLKYALG 383 (384)
T ss_pred HHhccHHHHHHHHHHHcC
Confidence 888877 5888888875
No 8
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=6.6e-40 Score=352.58 Aligned_cols=364 Identities=21% Similarity=0.279 Sum_probs=243.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
+||+||||||+|+++|+.|+++|++|+|+||.+... ..+ ..+.+.++++++|+++ |+++++...+.... .+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~g---~~~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~-~~~- 72 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELR-TGG---YMVDFWGVGYEVAKRM--GITDQLREAGYQIE-HVR- 72 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCcc-CCC---eEEeccCcHHHHHHHc--CCHHHHHhccCCcc-ceE-
Confidence 489999999999999999999999999999985432 222 2577889999999999 78888876553221 221
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC-ceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
+.+. .+.....++........+.+ .+.+.|..|.+.|.+.+.. ..++++++|+++++++++|+|++++|+++++|+|
T Consensus 73 ~~~~-~g~~~~~~~~~~~~~~~g~~-~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~v 150 (391)
T PRK07588 73 SVDP-TGRRKADLNVDSFRRMVGDD-FTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLV 150 (391)
T ss_pred EEcC-CCCEEEEecHHHccccCCCc-eEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEE
Confidence 2221 23222333221111112223 2579999999999887654 4688999999999999999999999999999999
Q ss_pred EEecCCchhhhhhhcCCCC--ccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCCCCCC-
Q 006025 237 IGADGIWSKVRKNLFGPQE--AIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGV- 313 (664)
Q Consensus 237 VgADG~~S~vR~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 313 (664)
|||||.+|.||+.+++... ..|.+...+....... .......+..|.+++..+..+|..++...|++....+....
T Consensus 151 IgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~ 229 (391)
T PRK07588 151 IGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGY-RPRDERTYVLYNEVGRQVARVALRGDRTLFLFIFRAEHDNPP 229 (391)
T ss_pred EECCCCCccchhhccCCccceEEEcCcEEEEEEcCCC-CCCCCceEEEEeCCCCEEEEEecCCCCeEEEEEEEcCCcccc
Confidence 9999999999998743322 3344433332222111 11122334556666667777788777655544433222111
Q ss_pred CCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHHHHH
Q 006025 314 DGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQL 393 (664)
Q Consensus 314 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da~~L 393 (664)
.......+.+.+.+..|.....+.+....................+|..||++|+|||||.|+|+.|||+|+||+||..|
T Consensus 230 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n~aieDa~~L 309 (391)
T PRK07588 230 LTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSGLAITEAYVL 309 (391)
T ss_pred CCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHHHHHHHHHHH
Confidence 12233455667777776543333332221111011111122345689999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccCCC
Q 006025 394 AVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPG 468 (664)
Q Consensus 394 a~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~ 468 (664)
+++|.... .+...+|+.|++.|++++..++..++. ...+|.+...+...+|+..+...+
T Consensus 310 a~~L~~~~---------~~~~~al~~Y~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~~~~~~~~ 368 (391)
T PRK07588 310 AGELARAG---------GDHRRAFDAYEKRLRPFIAGKQAAAAK-------FLSVFAPKTRFGLYVRNIAMKIMN 368 (391)
T ss_pred HHHHHhcc---------CCHHHHHHHHHHHHHHHHHHHHhhccc-------ccccccCCCHHHHHHHHHHHHHhc
Confidence 99997531 135689999999999999988776653 333455555566778887776655
No 9
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=1.8e-40 Score=358.42 Aligned_cols=377 Identities=17% Similarity=0.190 Sum_probs=242.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCcccc-CCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~-~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
..+||+||||||+|+++|+.|+++|++|+|+|+...... .......+..++++++++|+++ |+++++.+........
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~~~ 80 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNL--GAWQGIEARRAAPYIA 80 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhC--CchhhhhhhhCCcccE
Confidence 357999999999999999999999999999999632111 1100112467999999999999 8999987643222222
Q ss_pred ccccccCCCCceeeeccCCCcccccCC-CeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEEEEEcCCcE
Q 006025 155 INGLVDGISGSWYIKFDTFTPAAEKGL-PVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQC 230 (664)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~~g~~ 230 (664)
+. +++... .....++. ...+. ++++.+.+..|++.|.+++. ...++++++|++++.+++.++|++++|++
T Consensus 81 ~~-~~~~~~-~~~~~~~~----~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~ 154 (405)
T PRK08850 81 ME-VWEQDS-FARIEFDA----ESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQA 154 (405)
T ss_pred EE-EEeCCC-CceEEEec----cccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCE
Confidence 22 222211 11222321 11122 35778999999999988763 24578899999999888899999999999
Q ss_pred EeccEEEEecCCchhhhhhhcC-CCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCe-EEEEEEeeC
Q 006025 231 YAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK-MQWYAFHKE 308 (664)
Q Consensus 231 i~adlvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 308 (664)
++||+||+|||.+|.+|+.+.. .....|.+ .++.+.+.... ......+..| +++..+..+|..++. +.|++....
T Consensus 155 ~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~-~~~~~~v~~~~-~~~~~~~~~~-~~~g~~~~lp~~~~~~~~~~w~~~~ 231 (405)
T PRK08850 155 LTAKLVVGADGANSWLRRQMDIPLTHWDYGH-SALVANVRTVD-PHNSVARQIF-TPQGPLAFLPMSEPNMSSIVWSTEP 231 (405)
T ss_pred EEeCEEEEeCCCCChhHHHcCCCeeEEeecc-EEEEEEEEccC-CCCCEEEEEE-cCCCceEEEECCCCCeEEEEEECCH
Confidence 9999999999999999999843 33445643 45555443211 1122233344 444445555665443 344332211
Q ss_pred CCCC---CCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhH
Q 006025 309 PAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (664)
Q Consensus 309 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ 385 (664)
.... ........+.+.+.+... + ..+.... ....+++.. ....+|.++||+|+|||||.++|++|||+|+
T Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~---~-~~~~~~~--~~~~~pl~~-~~~~~~~~~rv~LiGDAAH~~~P~~GQG~n~ 304 (405)
T PRK08850 232 LRAEALLAMSDEQFNKALTAEFDNR---L-GLCEVVG--ERQAFPLKM-RYARDFVRERVALVGDAAHTIHPLAGQGVNL 304 (405)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhh---h-CcEEEcc--cccEEecce-eeccccccCcEEEEEhhhhcCCccccccHHH
Confidence 0000 000001111122222110 0 0000000 001122222 2346899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeeccc
Q 006025 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (664)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (664)
||+||.+|+++|....+.+ .+.....+|+.|+++|++++..++.++.. +..+|.....++..+|+.++.
T Consensus 305 ai~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~-------l~~~~~~~~~~~~~~R~~~l~ 373 (405)
T PRK08850 305 GLLDAASLAQEILALWQQG----RDIGLKRNLRGYERWRKAEAAKMIAAMQG-------FRDLFSGSNPAKKLVRGIGMS 373 (405)
T ss_pred HHHHHHHHHHHHHHHHhcC----CCcchHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHCCCchHHHHHHHHHHH
Confidence 9999999999999876432 22334689999999999999977766543 445566666778899999988
Q ss_pred CCCccc--ceeeeehhhh
Q 006025 466 HPGRVG--GRFFIDLAMP 481 (664)
Q Consensus 466 ~~~~~~--~~~l~~~~~g 481 (664)
..+.++ ++++++++++
T Consensus 374 ~~~~~~~~k~~~~~~~~g 391 (405)
T PRK08850 374 LAGQLPGAKDEIMKRALG 391 (405)
T ss_pred HHhhCHHHHHHHHHHHhC
Confidence 887766 3677777665
No 10
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=3.8e-40 Score=354.62 Aligned_cols=380 Identities=18% Similarity=0.170 Sum_probs=249.4
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCC-CCcccceeeCchHHHHHHhcChhHHHHHHHhccccC
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGE-GQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~-g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~ 152 (664)
....+||+||||||+|+++|+.|+++|++|+|+||.+.+.... +.....+.++++++++|+.+ |+++.+........
T Consensus 3 ~~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~ 80 (392)
T PRK08773 3 RRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRL--GVWPAVRAARAQPY 80 (392)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHC--CchhhhhHhhCCcc
Confidence 3456899999999999999999999999999999986432211 11112367899999999999 78888865422222
Q ss_pred ccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCeEEEEEcCCcE
Q 006025 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQC 230 (664)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~~g~~ 230 (664)
..+. +++.. +.....++... ....+.++.++|..|.+.|.+.+.. ..++++++|++++.++++++|++++|++
T Consensus 81 ~~~~-~~~~~-~~~~~~~~~~~---~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~ 155 (392)
T PRK08773 81 RRMR-VWDAG-GGGELGFDADT---LGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRR 155 (392)
T ss_pred cEEE-EEeCC-CCceEEechhc---cCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCE
Confidence 2222 22211 11122332211 1122356889999999999887632 3578899999999988899999999999
Q ss_pred EeccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCC
Q 006025 231 YAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 309 (664)
Q Consensus 231 i~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (664)
++||+||+|||.+|.+|+.+. ......|.+. +......... +.....+..+...+. +..+|..++...|++.....
T Consensus 156 ~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~-~~~~~v~~~~-~~~~~~~~~~~~~g~-~~~lP~~~~~~~~~w~~~~~ 232 (392)
T PRK08773 156 LEAALAIAADGAASTLRELAGLPVSRHDYAQR-GVVAFVDTEH-PHQATAWQRFLPTGP-LALLPFADGRSSIVWTLPDA 232 (392)
T ss_pred EEeCEEEEecCCCchHHHhhcCCceEEEeccE-EEEEEEEccC-CCCCEEEEEeCCCCc-EEEEECCCCceEEEEECCHH
Confidence 999999999999999999873 2223445442 2222222111 112233444544443 44556666655444433211
Q ss_pred CCC---CCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHH
Q 006025 310 AGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMA 386 (664)
Q Consensus 310 ~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~a 386 (664)
... ........+.+.+.|..+...+. .... ...+++.. ....+|..+||+|+|||||.++|++|||+|+|
T Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~--~~~~~l~~-~~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~a 305 (392)
T PRK08773 233 EAERVLALDEAAFSRELTQAFAARLGEVR----VASP--RTAFPLRR-QLVQQYVSGRVLTLGDAAHVVHPLAGQGVNLG 305 (392)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhhhcCeE----ecCC--ccEeechh-hhhhhhcCCcEEEEechhhcCCCchhchhhhh
Confidence 000 00011112233333333322110 0110 11223332 24568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccC
Q 006025 387 IEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 466 (664)
Q Consensus 387 l~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 466 (664)
|+||..|+++|.+++..+. +.....+|++|+++|++++.. ++..++. +..+|+++..++..+|++++..
T Consensus 306 l~Da~~La~~L~~~~~~~~----~~~~~~~l~~y~~~R~~~~~~------~~~~~~~-l~~~f~~~~~~~~~~r~~~l~~ 374 (392)
T PRK08773 306 LRDVAALQQLVRQAHARRA----DWAAPHRLQRWARTRRSDNTV------AAYGFDA-INRVFSNDEMHLTLLRGSVLGL 374 (392)
T ss_pred HHHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHHcCCChHHHHHHHHHHHH
Confidence 9999999999998765431 223457999999999999873 3333443 6778899999999999999998
Q ss_pred CCccc--ceeeeehhhh
Q 006025 467 PGRVG--GRFFIDLAMP 481 (664)
Q Consensus 467 ~~~~~--~~~l~~~~~g 481 (664)
++.++ |+++++++||
T Consensus 375 ~~~~~~~k~~~~~~~~g 391 (392)
T PRK08773 375 AGKLPPLVDALWKRASG 391 (392)
T ss_pred HhhCHHHHHHHHHHHcC
Confidence 88877 5888888876
No 11
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=1.2e-39 Score=354.49 Aligned_cols=372 Identities=21% Similarity=0.258 Sum_probs=242.2
Q ss_pred CcEEEECCCHHHHHHHHHHHH----cCCeEEEEccCCccccC-------CC-CcccceeeCchHHHHHHhcChhHHHHHH
Q 006025 78 LRILVAGGGIGGLVFALAAKR----KGFEVLVFEKDMSAIRG-------EG-QYRGPIQIQSNALAALEAIDLDVAEEVM 145 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~----~g~~~~~~~~~~~~~~~-------~g-~~~~~~~l~~~~~~~L~~l~~g~~~~~~ 145 (664)
+||+||||||+|+++|+.|++ +|++|+|||+.+.+... .+ ....++.++++++++|+.+ |+++++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~l--G~~~~l~ 78 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKI--GAWDHIQ 78 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHc--Cchhhhh
Confidence 689999999999999999999 89999999996433211 11 1123688999999999999 8999987
Q ss_pred HhccccCccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC-----CceEEeCCeEEEEEe----
Q 006025 146 RAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-----DEIILNESNVIDFKD---- 216 (664)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-----~~~i~~~~~v~~v~~---- 216 (664)
.........+. ++++. +.....++.. ....++++.++|..|++.|.+.+. +..++++++|++++.
T Consensus 79 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~----~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~ 152 (437)
T TIGR01989 79 SDRIQPFGRMQ-VWDGC-SLALIRFDRD----NGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKY 152 (437)
T ss_pred hhcCCceeeEE-EecCC-CCceEEeecC----CCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEecccc
Confidence 65432222222 23332 2223444321 112345789999999999988752 245889999999974
Q ss_pred ---eCCeEEEEEcCCcEEeccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEE
Q 006025 217 ---HGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVS 292 (664)
Q Consensus 217 ---~~~~v~v~~~~g~~i~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (664)
++++++|++.+|++++||+||||||++|.||+.+. ......|.+... .+.+...........++.|...+. +..
T Consensus 153 ~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~-v~~v~~~~~~~~~~~~~~f~~~g~-~~~ 230 (437)
T TIGR01989 153 PNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAV-VATLKLEEATENDVAWQRFLPTGP-IAL 230 (437)
T ss_pred ccCCCCceEEEEcCCCEEEeeEEEEecCCCChhHHHcCCCccceeeccEEE-EEEEEcccCCCCCeEEEEECCCCC-EEE
Confidence 24678999999999999999999999999999984 445667776433 333322111223344566665554 444
Q ss_pred eeCCCCeEEEEEEeeCCCCC---CCCCcchHHHHHHHHh----CCCh-----h-HHH--------------------HHH
Q 006025 293 SDVGAGKMQWYAFHKEPAGG---VDGPEGKKERLLKIFE----GWCD-----N-VVD--------------------LIL 339 (664)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~----~~~~-----~-~~~--------------------~l~ 339 (664)
.|..++...|++........ ........+.+.+.+. .|.. . +.+ .+.
T Consensus 231 lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 310 (437)
T TIGR01989 231 LPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCFQVPPRVI 310 (437)
T ss_pred eECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCchhh
Confidence 56766665555433211000 0001111122222220 0000 0 000 000
Q ss_pred cCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHH
Q 006025 340 ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKS 419 (664)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~ 419 (664)
.........+++ ......+|..+|++|+|||||.++|++|||+|+||+||.+|+++|.++.+.+ .+.....+|+.
T Consensus 311 ~~~~~~~~~~~~-~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~----~~~~~~~~L~~ 385 (437)
T TIGR01989 311 GVVDKSRAAFPL-GLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVG----ADIGSISSLKP 385 (437)
T ss_pred eeecccceeEEe-cccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcC----CChhHHHHHHH
Confidence 000000011122 2234568999999999999999999999999999999999999999886543 22233579999
Q ss_pred HHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccCCCccc
Q 006025 420 YERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG 471 (664)
Q Consensus 420 Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~ 471 (664)
|+++|++++..++.+++. +..+|.++..++..+|++++..++.++
T Consensus 386 Y~~~R~~~~~~v~~~t~~-------l~~l~~~~~~~~~~~R~~~l~~~~~~~ 430 (437)
T TIGR01989 386 YERERYAKNVVLLGLVDK-------LHKLYATDFPPVVALRTFGLNLTNYIG 430 (437)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHcCCccHHHHHHHHHHHHhhhCH
Confidence 999999999977665543 455677777888999999988777754
No 12
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=3.3e-40 Score=356.65 Aligned_cols=377 Identities=18% Similarity=0.254 Sum_probs=243.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccC----CCCcccceeeCchHHHHHHhcChhHHHHHHHhccccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG----EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~----~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~ 152 (664)
.+||+||||||+|+++|+.|+++|++|+|+|+.+..... .........++++++++|+.+ |+++++........
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~ 79 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERL--GAWDGIAARRASPY 79 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHC--ChhhhhhHhhCccc
Confidence 479999999999999999999999999999997521100 000112357899999999999 78888865432222
Q ss_pred ccccccccCCCCceeeeccCCCcccccC-CCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCeEEEEEcCCc
Q 006025 153 DRINGLVDGISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQ 229 (664)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~~g~ 229 (664)
..+. +++.. +.....|+.. ..+ ...++.++|..|.+.|.+.+.. ..+++++++++++.++++++|++++|+
T Consensus 80 ~~~~-~~~~~-~~~~~~~~~~----~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~ 153 (405)
T PRK05714 80 SEMQ-VWDGS-GTGQIHFSAA----SVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGR 153 (405)
T ss_pred eeEE-EEcCC-CCceEEeccc----ccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCC
Confidence 2222 22322 2223333311 111 1235789999999999887633 357889999999998889999999999
Q ss_pred EEeccEEEEecCCchhhhhhhcC-CCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCC-eEEEE-EEe
Q 006025 230 CYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWY-AFH 306 (664)
Q Consensus 230 ~i~adlvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~ 306 (664)
+++||+||+|||++|.||+.++. .....|.+...+.. ... +.......+..+.+. ..+..+|...+ ...|+ +..
T Consensus 154 ~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~-g~~~~~P~~~~~~~~~~~~~~ 230 (405)
T PRK05714 154 QLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTS-VRC-SEPHRATAWQRFTDD-GPLAFLPLERDGDEHWCSIVW 230 (405)
T ss_pred EEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEE-EEc-CCCCCCEEEEEcCCC-CCeEEeeCCCCCCCCeEEEEE
Confidence 99999999999999999999843 23334554332221 111 111222334443433 34555665432 11221 111
Q ss_pred eCCCCCC-----CCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCcc
Q 006025 307 KEPAGGV-----DGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQ 381 (664)
Q Consensus 307 ~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~Gq 381 (664)
..+.... .......+.+.+.|.. .+.+.+ ... ....+++... ...+|..+||+|+|||||.|+|++||
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~-~~~--~~~~~~l~~~-~~~~~~~~rv~LlGDAAH~~~P~~GQ 303 (405)
T PRK05714 231 STTPEEAERLMALDDDAFCAALERAFEG---RLGEVL-SAD--PRLCVPLRQR-HAKRYVEPGLALIGDAAHTIHPLAGQ 303 (405)
T ss_pred ECCHHHHHHHHCCCHHHHHHHHHHHHHH---HhCCce-ecC--CccEEeccee-ehhhhccCCEEEEEeccccCCCcccc
Confidence 1111000 0000111222222221 111111 111 1122344443 46789999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceee
Q 006025 382 GGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTK 461 (664)
Q Consensus 382 G~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~ 461 (664)
|+|+||+||.+|+++|..+...+ .+.....+|+.|+++|++++..++.+++. +..+|.++..++..+|+
T Consensus 304 G~n~al~DA~~La~~L~~~~~~g----~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~R~ 372 (405)
T PRK05714 304 GVNLGFLDAAVLAEVLLHAAERG----ERLADVRVLSRFERRRMPHNLALMAAMEG-------FERLFQADPLPLRWLRN 372 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHCCCchHHHHHHH
Confidence 99999999999999998765322 11223589999999999999987766543 44566777788999999
Q ss_pred ecccCCCccc--ceeeeehhhhh
Q 006025 462 FRIPHPGRVG--GRFFIDLAMPL 482 (664)
Q Consensus 462 ~~l~~~~~~~--~~~l~~~~~g~ 482 (664)
.++...+.++ |++++++++|.
T Consensus 373 ~~l~~~~~~~~~k~~~~~~~~g~ 395 (405)
T PRK05714 373 TGLKLVDQMPEAKALFVRQALGL 395 (405)
T ss_pred HHHHHHhhCHHHHHHHHHHHhcC
Confidence 9998888766 58899988764
No 13
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-39 Score=346.60 Aligned_cols=376 Identities=19% Similarity=0.188 Sum_probs=246.0
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~ 153 (664)
....+||+||||||+|+++|+.|+++|++|+|+|+.+..... ..+..+++.++++|+.+ |+++++.........
T Consensus 3 ~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~----~r~~~l~~~s~~~L~~l--G~~~~~~~~~~~~~~ 76 (407)
T PRK06185 3 EVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRD----FRGDTVHPSTLELMDEL--GLLERFLELPHQKVR 76 (407)
T ss_pred ccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcc----ccCceeChhHHHHHHHc--CChhHHhhcccceee
Confidence 345689999999999999999999999999999997543221 12467999999999999 788887653322222
Q ss_pred cccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeE---EEEEcC
Q 006025 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKV---SVVLEN 227 (664)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v---~v~~~~ 227 (664)
.+. +.+.........++. .....++.+.+.+..|.+.|.+.+. ...++++++|+++..+++.+ .+...+
T Consensus 77 ~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~ 151 (407)
T PRK06185 77 TLR-FEIGGRTVTLADFSR----LPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPD 151 (407)
T ss_pred eEE-EEECCeEEEecchhh----cCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCC
Confidence 222 121111011122221 1223456678999999999988652 34588899999998877765 344446
Q ss_pred Cc-EEeccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEE
Q 006025 228 GQ-CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAF 305 (664)
Q Consensus 228 g~-~i~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (664)
|+ +++||+||+|||.+|.+|+.+. ......|.+...+.. ... +.......+..+ .++..+...|.. +.+.+.+.
T Consensus 152 g~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~-~~~g~~~llP~~-~~~~i~~~ 227 (407)
T PRK06185 152 GPGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDVLWFR-LPR-EPDDPESLMGRF-GPGQGLIMIDRG-DYWQCGYV 227 (407)
T ss_pred CcEEEEeCEEEECCCCchHHHHHcCCCccccCCCceeEEEe-cCC-CCCCCcccceEe-cCCcEEEEEcCC-CeEEEEEE
Confidence 64 7999999999999999999884 333445555433322 111 111111234444 444445555664 44433332
Q ss_pred eeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCcc-ceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchh
Q 006025 306 HKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (664)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 384 (664)
.... ..........+.+.+.+..+.+.+.+.+...... ....+++. .....+|..+|++|+|||||.+||++|||+|
T Consensus 228 ~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 305 (407)
T PRK06185 228 IPKG-GYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVR-VDRLRRWHRPGLLCIGDAAHAMSPVGGVGIN 305 (407)
T ss_pred ecCC-CchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEe-ccccccccCCCeEEEeccccccCcccccchh
Confidence 2211 1111112234556666666655554444432211 11112222 2345689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCC--Ccccceeee
Q 006025 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGL--GPLSFLTKF 462 (664)
Q Consensus 385 ~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~r~~ 462 (664)
+||+||..|++.|.++++.+ + ....+|+.|+++|++++..++.++ +. +..+|+++. .+++.+|++
T Consensus 306 lgl~Da~~La~~l~~~~~~~-----~-~~~~~L~~Y~~~R~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~R~~ 372 (407)
T PRK06185 306 LAIQDAVAAANILAEPLRRG-----R-VSDRDLAAVQRRREFPTRVTQALQ------RR-IQRRLLAPALAGRGPLGPPL 372 (407)
T ss_pred HHHHHHHHHHHHHHHHhccC-----C-ccHHHHHHHHHHhhhHHHHHHHHH------HH-HHHhhccccccCccccCCch
Confidence 99999999999999887542 1 124899999999999998665444 33 455667776 889999999
Q ss_pred cccCCCccc--ceeeeehh
Q 006025 463 RIPHPGRVG--GRFFIDLA 479 (664)
Q Consensus 463 ~l~~~~~~~--~~~l~~~~ 479 (664)
+|..++.++ |+++++++
T Consensus 373 ~l~~~~~~~~~k~~~~~~~ 391 (407)
T PRK06185 373 LLRLLNRLPWLRRLPARLV 391 (407)
T ss_pred HHHHHHhChhHHHhhHHhe
Confidence 999988876 46676654
No 14
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=100.00 E-value=2e-38 Score=343.52 Aligned_cols=341 Identities=25% Similarity=0.393 Sum_probs=243.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC-CeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCc---
Q 006025 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD--- 153 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~--- 153 (664)
.+|+||||||+||++|+.|+++| ++|+||||.+... .. +.++.+.|+++++|+.+ |+.+.+...+.....
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~-~~---G~gi~l~~~~~~~L~~l--g~~~~~~~~~~~~~~~~~ 74 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG-EV---GAGVSFGANAVRAIVGL--GLGEAYTQVADSTPAPWQ 74 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC-CC---ccceeeCccHHHHHHHc--CChhHHHHHhcCCCccCc
Confidence 37999999999999999999998 5999999975432 22 34789999999999999 666666554321111
Q ss_pred ccc-ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEe
Q 006025 154 RIN-GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (664)
Q Consensus 154 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ 232 (664)
... .+.++...... ... ...+.+ ...++|..|.+.|.+.+....++++++|++++.++++|+|++++|++++
T Consensus 75 ~~~~~~~~~~~~~~~-~~~-----~~~~~~-~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ 147 (414)
T TIGR03219 75 DIWFEWRNGSDASYL-GAT-----IAPGVG-QSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFTDGTEYR 147 (414)
T ss_pred ceeEEEEecCcccee-eee-----ccccCC-cccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEcCCCEEE
Confidence 110 01111111110 000 001111 1368999999999998866667889999999998889999999999999
Q ss_pred ccEEEEecCCchhhhhhhcC-----CCCccccceEEEEEEeccCC--CC-----cc---ccceEEEecCeeEEEEeeCCC
Q 006025 233 GDLLIGADGIWSKVRKNLFG-----PQEAIYSGYTCYTGIADFVP--AD-----IE---SVGYRVFLGHKQYFVSSDVGA 297 (664)
Q Consensus 233 adlvVgADG~~S~vR~~l~~-----~~~~~~~~~~~~~~~~~~~~--~~-----~~---~~~~~~~~~~~~~~~~~~~~~ 297 (664)
+|+||+|||.+|.||+.+++ ...+.|.++.+|.++..... .. .+ ......+.+.+..++.++..+
T Consensus 148 ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 227 (414)
T TIGR03219 148 CDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLGLDGHILTFPVRQ 227 (414)
T ss_pred eeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEcCCCeEEEEECCC
Confidence 99999999999999999853 23456788788887653211 00 00 012235666667777778877
Q ss_pred CeE-EEEEEeeCCCC--------CCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEE
Q 006025 298 GKM-QWYAFHKEPAG--------GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLL 368 (664)
Q Consensus 298 ~~~-~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~Lv 368 (664)
+.. +|..+...+.. .........+.+.+.|..|.+.+.+.+...... ..+.++...+..+|+.|||+|+
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~w~~grv~Li 305 (414)
T TIGR03219 228 GRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIPAP--TLWALHDLAELPGYVHGRVALI 305 (414)
T ss_pred CcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCCCC--CceeeeecccccceeeCcEEEE
Confidence 764 44444322211 111123356778889999999888877665432 2345566666778999999999
Q ss_pred ccCcCcCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHH
Q 006025 369 GDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 439 (664)
Q Consensus 369 GDAAh~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~ 439 (664)
|||||.|.|+.|||+|+||+||..|+++|...... ..+++.+|+.|+++|++++..++.+++.+.
T Consensus 306 GDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~------~~~~~~al~~Ye~~R~~r~~~~~~~s~~~~ 370 (414)
T TIGR03219 306 GDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELE------AGDLPALLEAYDDVRRPRACRVQRTSREAG 370 (414)
T ss_pred EcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccC------cchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999865321 245789999999999999999998887644
No 15
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=6.6e-38 Score=337.98 Aligned_cols=343 Identities=31% Similarity=0.436 Sum_probs=242.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
.+.||+||||||+|+++|+.|++.|++|+|+||.+... .. +.++.++++++++|+.+ |+++.+...+... ..+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~-~~---g~gi~l~~~~~~~l~~l--g~~~~~~~~~~~~-~~~ 75 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG-EI---GAGIQLGPNAFSALDAL--GVGEAARQRAVFT-DHL 75 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc-cc---cceeeeCchHHHHHHHc--CChHHHHhhccCC-cce
Confidence 35799999999999999999999999999999986432 22 23688999999999999 6777776554322 122
Q ss_pred cccccCCCCceeeeccCCC-cccccCCCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEEEEEcCCcEE
Q 006025 156 NGLVDGISGSWYIKFDTFT-PAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCY 231 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i 231 (664)
. +.+...+.....++... .....+.++ +.++|..|.+.|.+.+. ...++++++|++++.+++++.+++.+|+++
T Consensus 76 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~ 153 (396)
T PRK08163 76 T-MMDAVDAEEVVRIPTGQAFRARFGNPY-AVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRW 153 (396)
T ss_pred E-EEeCCCCCEEEEeccchhHHHhcCCcE-EEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEE
Confidence 1 22222222222222111 011223332 47899999999998763 245788999999998888899999999999
Q ss_pred eccEEEEecCCchhhhhhhcCCCCccccceEEEEEEeccC--CCCccccceEEEecCeeEEEEeeCCCCeE-EEEEEeeC
Q 006025 232 AGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFV--PADIESVGYRVFLGHKQYFVSSDVGAGKM-QWYAFHKE 308 (664)
Q Consensus 232 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 308 (664)
+||+||+|||.+|.+|+.+.+. ...|.+..++.+..... +..........+.+++.+++.+|..++.. .+++....
T Consensus 154 ~ad~vV~AdG~~S~~r~~~~g~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~g~~~~~~~~~~~ 232 (396)
T PRK08163 154 TGDALIGCDGVKSVVRQSLVGD-APRVTGHVVYRAVIDVDDMPEDLRINAPVLWAGPHCHLVHYPLRGGEQYNLVVTFHS 232 (396)
T ss_pred ecCEEEECCCcChHHHhhccCC-CCCccccEEEEEEEeHHHCcchhccCccEEEEcCCceEEEEEecCCeEEEEEEEECC
Confidence 9999999999999999998544 44566666666655321 11111122345566666777777766653 33333322
Q ss_pred CC-CCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHH
Q 006025 309 PA-GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (664)
Q Consensus 309 ~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al 387 (664)
.. ..........+.+.+.|..|.+.+.+.+..... +..+.++...+..+|..|||+|+|||||.|+|+.|||+|+||
T Consensus 233 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ai 310 (396)
T PRK08163 233 REQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPTS--WKRWATADREPVAKWSTGRVTLLGDAAHPMTQYMAQGACMAL 310 (396)
T ss_pred CCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCCc--eeEccccCCCcccccccCcEEEEecccccCCcchhccHHHHH
Confidence 21 111112234677889999999888777654332 233445555567789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHH
Q 006025 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 439 (664)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~ 439 (664)
+||..|+++|... ..++..+|+.|+++|++++..++..++.+.
T Consensus 311 ~Da~~La~~L~~~---------~~~~~~al~~y~~~R~~r~~~~~~~s~~~~ 353 (396)
T PRK08163 311 EDAVTLGKALEGC---------DGDAEAAFALYESVRIPRTARVVLSAREMG 353 (396)
T ss_pred HHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999652 124578999999999999999888776543
No 16
>PRK07236 hypothetical protein; Provisional
Probab=100.00 E-value=3.4e-38 Score=338.45 Aligned_cols=335 Identities=27% Similarity=0.369 Sum_probs=231.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
+..++|+||||||+||++|+.|++.|++|+|+||.+.+....| .++.+.++++++|+.+ |+.+.. ..+.... .
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g---~gi~l~~~~~~~l~~l--g~~~~~-~~~~~~~-~ 76 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRG---AGIVLQPELLRALAEA--GVALPA-DIGVPSR-E 76 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCC---ceeEeCHHHHHHHHHc--CCCccc-ccccCcc-c
Confidence 4568999999999999999999999999999999864432222 3678999999999999 554433 2221111 1
Q ss_pred ccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEecc
Q 006025 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (664)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ad 234 (664)
.. +.+ ..+....... .+. ..+.+..|.+.|.+.++...++++++|++++.++++++|++++|++++||
T Consensus 77 ~~-~~~-~~g~~~~~~~---------~~~-~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad 144 (386)
T PRK07236 77 RI-YLD-RDGRVVQRRP---------MPQ-TQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETAD 144 (386)
T ss_pred eE-EEe-CCCCEeeccC---------CCc-cccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeC
Confidence 11 111 1121111111 111 13567889999988887666899999999999888999999999999999
Q ss_pred EEEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCcc-----ccceEEEecCeeEEEEeeCCC---------CeE
Q 006025 235 LLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIE-----SVGYRVFLGHKQYFVSSDVGA---------GKM 300 (664)
Q Consensus 235 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~---------~~~ 300 (664)
+||+|||++|.||+++++...+.|.++.+|.++......... ...+..+.+++..++.++..+ ..+
T Consensus 145 ~vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (386)
T PRK07236 145 LLVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRY 224 (386)
T ss_pred EEEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEE
Confidence 999999999999999976667788888888776542211111 123445556665566655532 224
Q ss_pred EEEEEeeCCCCCC-----------------C---CCcchHHHHHHHHhC-CChhHHHHHHcCCccceeeeecccCCCCcc
Q 006025 301 QWYAFHKEPAGGV-----------------D---GPEGKKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIFT 359 (664)
Q Consensus 301 ~~~~~~~~~~~~~-----------------~---~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (664)
.|+++...+.... . ......+.+.+.+.. |.+.+.+.+...... ..+.++... ..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~ 301 (386)
T PRK07236 225 NWVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATAQP--FVQAIFDLE-VPR 301 (386)
T ss_pred EEEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCcCc--hhhhhhccc-Ccc
Confidence 5555443321000 0 011223444555554 777777776655432 222344332 357
Q ss_pred ccCCcEEEEccCcCcCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHH
Q 006025 360 WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAA 439 (664)
Q Consensus 360 ~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~ 439 (664)
|..||++|+|||||.|+|+.|||+|+||+||..|+++|.... .+...+|+.|+++|++++..++..++.+.
T Consensus 302 ~~~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~---------~~~~~al~~Ye~~R~~r~~~~~~~s~~~~ 372 (386)
T PRK07236 302 MAFGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA---------GDIDAALAAWEAERLAVGAAIVARGRRLG 372 (386)
T ss_pred cccCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc---------cchHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997631 23578999999999999999998887543
Q ss_pred H
Q 006025 440 V 440 (664)
Q Consensus 440 ~ 440 (664)
.
T Consensus 373 ~ 373 (386)
T PRK07236 373 A 373 (386)
T ss_pred H
Confidence 3
No 17
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=3.7e-38 Score=338.71 Aligned_cols=342 Identities=20% Similarity=0.287 Sum_probs=223.7
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
+..+||+||||||+|+++|+.|+++|++|+|+|+.+.+....+ ...++++++++|+++ |+++.+...+......
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~----~~~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~ 76 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNG----ADLLKPSGIGVVRAM--GLLDDVFAAGGLRRDA 76 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCc----ccccCccHHHHHHHc--CCHHHHHhcccccccc
Confidence 3457999999999999999999999999999999875432222 356999999999999 7888887654322222
Q ss_pred ccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCe--EEEEEcCCc
Q 006025 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK--VSVVLENGQ 229 (664)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~--v~v~~~~g~ 229 (664)
+..+. .+.....++... ....+ +...+.|..|++.|.+++. ...++++++|++++.++++ +.|++++|+
T Consensus 77 ~~~~~---~g~~~~~~~~~~-~~~~g--~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~ 150 (388)
T PRK07045 77 MRLYH---DKELIASLDYRS-ASALG--YFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGE 150 (388)
T ss_pred eEEec---CCcEEEEecCCc-cccCC--ceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCC
Confidence 22111 122222222111 01112 2346889999999998763 3468899999999987665 468888999
Q ss_pred EEeccEEEEecCCchhhhhhhcC--CCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEee
Q 006025 230 CYAGDLLIGADGIWSKVRKNLFG--PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHK 307 (664)
Q Consensus 230 ~i~adlvVgADG~~S~vR~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (664)
++++|+||||||.+|.||+.+.+ .....|.+... ++.....+ ........++...+.+.+.+|..++...|++...
T Consensus 151 ~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 228 (388)
T PRK07045 151 RVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMA-FGTIALTD-SVRECNRLYVDSNQGLAYFYPIGDQATRLVVSFP 228 (388)
T ss_pred EEECCEEEECCCCChHHHHHhhCCCcccCCCCccee-EEEEeccC-CccccceEEEcCCCceEEEEEcCCCcEEEEEEec
Confidence 99999999999999999997632 23344544333 33332211 1112222223233444556677666666655443
Q ss_pred CCCCCCCCCcchHHHHHHHHhCCC-hhHHHHHHcCCccc-eeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhH
Q 006025 308 EPAGGVDGPEGKKERLLKIFEGWC-DNVVDLILATDEEA-ILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (664)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ 385 (664)
.+...........+.+.+.+..|. +.+.+.+....... +...++. .....+|..+||+|+|||||.|+|++|||+|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~grv~LiGDAAH~~~P~~GqG~n~ 307 (388)
T PRK07045 229 ADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLG-RMNLDRYHKRNVVLLGDAAHSIHPITGQGMNL 307 (388)
T ss_pred cccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecC-ccccccccCCCEEEEEccccccCCCccccHHH
Confidence 221111111123455666666654 33333332222111 1111222 23456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHH
Q 006025 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (664)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~ 437 (664)
||+||..|+++|..++.+ ..+...+|+.|+++|++++..++..++.
T Consensus 308 ai~Da~~La~~L~~~~~~------~~~~~~~L~~Ye~~R~~~~~~~~~~~~~ 353 (388)
T PRK07045 308 AIEDAGELGACLDLHLSG------QIALADALERFERIRRPVNEAVISYGHA 353 (388)
T ss_pred HHHHHHHHHHHHHhhcCC------chhHHHHHHHHHHHhhhHHHHHHhhhHH
Confidence 999999999999876532 2346789999999999999988877654
No 18
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=2.9e-39 Score=347.86 Aligned_cols=378 Identities=20% Similarity=0.190 Sum_probs=243.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCC-c-ccceeeCchHHHHHHhcChhHHHHHHHhccccC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQ-Y-RGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~-~-~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~ 152 (664)
.+.+||+||||||+|+++|+.|+++|++|+|+|+.+......+. . .....++++++++|+.+ |+++.+........
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~ 80 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGL--GVWDAVQAMRSHPY 80 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHc--CChhhhhhhhCccc
Confidence 34589999999999999999999999999999997533221111 1 12357899999999999 78888765322221
Q ss_pred ccccccccCCCCceeeeccCCCcccccC-CCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEEEEEcCC
Q 006025 153 DRINGLVDGISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENG 228 (664)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~~g 228 (664)
..+. ..+...+ ...++.. ... ...++.++|..|++.|.+++. ...++++++|++++.+++++.|++++|
T Consensus 81 ~~~~-~~~~~~~--~~~~~~~----~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g 153 (391)
T PRK08020 81 RRLE-TWEWETA--HVVFDAA----ELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADG 153 (391)
T ss_pred ceEE-EEeCCCC--eEEeccc----ccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCC
Confidence 1211 1111111 1222211 111 234678999999999988752 335778999999998888899999999
Q ss_pred cEEeccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEee
Q 006025 229 QCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHK 307 (664)
Q Consensus 229 ~~i~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (664)
++++||+||+|||.+|.+|+.+. +...+.|.+.. +...... +.......+..+...+...+ .|..++...++++.
T Consensus 154 ~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~-~~~~~~~-~~~~~~~~~~~~~~~g~~~~-~p~~~~~~~~v~~~- 229 (391)
T PRK08020 154 EEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSC-MLISVKC-ENPPGDSTWQQFTPSGPRAF-LPLFDNWASLVWYD- 229 (391)
T ss_pred CEEEeCEEEEeCCCCchhHHHcCCCccccCCCceE-EEEEEEe-cCCCCCEEEEEEcCCCCEEE-eECCCCcEEEEEEC-
Confidence 89999999999999999999984 44455666533 3332222 11122233444554444333 34444433322221
Q ss_pred CCCCCCCCCcchHHHHHHHH-hCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHH
Q 006025 308 EPAGGVDGPEGKKERLLKIF-EGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMA 386 (664)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~a 386 (664)
.+...........+.+.+.+ ..|.+.+. .........+++.. ....+|..+|++|+|||||.++|++|||+|+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~pl~~-~~~~~~~~~rv~LvGDAAH~~~P~~GqG~n~a 304 (391)
T PRK08020 230 SPARIRQLQAMSMAQLQQEIAAHFPARLG----AVTPVAAGAFPLTR-RHALQYVQPGLALVGDAAHTINPLAGQGVNLG 304 (391)
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHhhhhcc----ceEeccccEeecce-eehhhhccCcEEEEechhhccCCcccchhHHH
Confidence 11000000000112222221 12211111 11111112223332 24568999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccC
Q 006025 387 IEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPH 466 (664)
Q Consensus 387 l~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~ 466 (664)
|+||..|+++|.+..+.+ .+.....+|+.|+++|++++..++ ..++. +..+|+++..+++.+|++++..
T Consensus 305 l~Da~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~~~~~------~~~~~-l~~~~~~~~~~~~~~R~~~l~~ 373 (391)
T PRK08020 305 YRDVDALLDVLVNARSYG----EAWASEAVLKRYQRRRMADNLLMQ------SGMDL-FYAGFSNNLPPLRFARNLGLMA 373 (391)
T ss_pred HHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHHHHH------HHHHH-HHHHHcCCchHHHHHHHHHHHH
Confidence 999999999999875432 222346899999999999987443 34444 5567888888999999999999
Q ss_pred CCccc--ceeeeehhhh
Q 006025 467 PGRVG--GRFFIDLAMP 481 (664)
Q Consensus 467 ~~~~~--~~~l~~~~~g 481 (664)
++.++ |+++++++||
T Consensus 374 ~~~~~~~k~~~~~~~~g 390 (391)
T PRK08020 374 AQRAGVLKRQALKYALG 390 (391)
T ss_pred HhcCHHHHHHHHHHHcC
Confidence 88877 5888888876
No 19
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=337.48 Aligned_cols=336 Identities=30% Similarity=0.413 Sum_probs=234.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
+||+||||||+||++|+.|+++|++|+||||.+... .. +.++.+.|+++++|+.+ |+++++...+.... .+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~-~~---g~gi~l~p~~~~~L~~l--gl~~~l~~~~~~~~-~~~- 72 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR-PL---GVGINLLPHAVRELAEL--GLLDALDAIGIRTR-ELA- 72 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc-cc---CcceeeCchHHHHHHHC--CCHHHHHhhCCCCc-ceE-
Confidence 489999999999999999999999999999986432 22 23688999999999999 78888766543221 221
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhc----CCceEEeCCeEEEEEeeCCeEEEEEcCC-----
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV----GDEIILNESNVIDFKDHGDKVSVVLENG----- 228 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~----~~~~i~~~~~v~~v~~~~~~v~v~~~~g----- 228 (664)
+.+. .+....... .........+ .+.++|..|++.|.+.+ +...++++++|++++++++++.+.+.++
T Consensus 73 ~~~~-~g~~~~~~~-~~~~~~~~~~-~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~ 149 (413)
T PRK07538 73 YFNR-HGQRIWSEP-RGLAAGYDWP-QYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDL 149 (413)
T ss_pred EEcC-CCCEEeecc-CCcccCCCCc-eEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCcc
Confidence 1221 122221111 0001111223 35799999999998775 3345889999999998888777777553
Q ss_pred cEEeccEEEEecCCchhhhhhhcCCC-CccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCC-------eE
Q 006025 229 QCYAGDLLIGADGIWSKVRKNLFGPQ-EAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-------KM 300 (664)
Q Consensus 229 ~~i~adlvVgADG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 300 (664)
++++||+||||||.+|.||+++.+.. .+.|.+...|.+.....+. .....+..+...+..++.++...+ .+
T Consensus 150 ~~~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~ 228 (413)
T PRK07538 150 VSVRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPF-LTGRSMVMAGHLDGKLVVYPISEPVDADGRQLI 228 (413)
T ss_pred ceEEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccc-cCCCcEEEEcCCCCEEEEEECCCCcccCCceEE
Confidence 48999999999999999999996443 5678887777776543221 111122222222344566665542 56
Q ss_pred EEEEEeeCCCC-----CCCCCcchHHHHHHHHhCCChh---HHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCc
Q 006025 301 QWYAFHKEPAG-----GVDGPEGKKERLLKIFEGWCDN---VVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSV 372 (664)
Q Consensus 301 ~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAA 372 (664)
.|++....+.. .........+++++.|..|... +.+.+.... .+..++++...+..+|..||++||||||
T Consensus 229 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~p~~~~~~~~~w~~grv~LvGDAA 306 (413)
T PRK07538 229 NWVAEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAAE--AIYEYPMVDRDPLPRWTRGRVTLLGDAA 306 (413)
T ss_pred EEEEEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcCc--ceeeccccccCCCCcccCCcEEEEeecc
Confidence 78776644321 1111234467778888887653 445554332 2445566666778899999999999999
Q ss_pred CcCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHH
Q 006025 373 HAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (664)
Q Consensus 373 h~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~ 437 (664)
|.|+|++|||+|+||+||..|+++|.+. .+...+|+.|+++|++++..++..++.
T Consensus 307 H~~~P~~GqG~~~Ai~Da~~La~~L~~~----------~~~~~aL~~Ye~~R~~~~~~~~~~s~~ 361 (413)
T PRK07538 307 HPMYPVGSNGASQAILDARALADALAAH----------GDPEAALAAYEAERRPATAQIVLANRL 361 (413)
T ss_pred CcCCCCCcccHHHHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 9999999999999999999999999863 135789999999999999988877765
No 20
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=2.9e-38 Score=352.34 Aligned_cols=362 Identities=20% Similarity=0.275 Sum_probs=238.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
+..+||+||||||+|+++|+.|+++|++|+||||.+.+.. ...++.+.++++++|+.+ |+++++...+.... .
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~----~~ra~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~ 80 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD----LPRAVGIDDEALRVLQAI--GLADEVLPHTTPNH-G 80 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC----CCceeeeCHHHHHHHHHc--CChhHHHhhcccCC-c
Confidence 4568999999999999999999999999999999864432 123578999999999999 78888876653222 1
Q ss_pred ccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEEEEEc--CC-
Q 006025 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE--NG- 228 (664)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~--~g- 228 (664)
+. +.+ ..+.....++. ......+++..+.+.|..+++.|.+.+. ...++++++|+++++++++|+++++ +|
T Consensus 81 ~~-~~~-~~g~~~~~~~~-~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~ 157 (538)
T PRK06183 81 MR-FLD-AKGRCLAEIAR-PSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQ 157 (538)
T ss_pred eE-EEc-CCCCEEEEEcC-CCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCC
Confidence 21 222 12333333332 1112234555567899999999988753 3468899999999999999998886 46
Q ss_pred -cEEeccEEEEecCCchhhhhhhcC-CCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEe
Q 006025 229 -QCYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFH 306 (664)
Q Consensus 229 -~~i~adlvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (664)
++++||+||||||++|.||+.+.. .....|........+ ..............+..++..++.++..++...|.+..
T Consensus 158 ~~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~~~~~ 236 (538)
T PRK06183 158 RETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDV-LIANDPLGGPHTYQYCDPARPYTSVRLPHGRRRWEFML 236 (538)
T ss_pred EEEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEE-ecccCccCCCceEEEECCCCCEEEEEcCCCeEEEEEEe
Confidence 479999999999999999999832 222333322111111 11111111112234455556666677777777775544
Q ss_pred eCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccC--CCCccccCCcEEEEccCcCcCCCCCccchh
Q 006025 307 KEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDR--TPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (664)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 384 (664)
.... .. ......+.+.+.+..|... .....+.....+.. ....+|..|||+|+|||||.++|++|||||
T Consensus 237 ~~~~-~~-~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n 307 (538)
T PRK06183 237 LPGE-TE-EQLASPENVWRLLAPWGPT-------PDDAELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMN 307 (538)
T ss_pred CCCC-Ch-hhcCCHHHHHHHHHhhCCC-------CcceEEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchh
Confidence 2211 11 1112345666666665310 00111122222222 234689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecc
Q 006025 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRI 464 (664)
Q Consensus 385 ~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l 464 (664)
+||+||.+|+|+|+..+++. ....+|+.|+++|++++..++.++..+.. ++.........+|+..+
T Consensus 308 ~gi~DA~~La~kLa~~~~g~-------~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~-------~~~~~~~~~~~~R~~~l 373 (538)
T PRK06183 308 SGIRDAANLAWKLAAVLRGR-------AGDALLDTYEQERRPHARAMIDLAVRLGR-------VICPTDRLAAALRDAVL 373 (538)
T ss_pred hhHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hccCCCHHHHHHHHHHH
Confidence 99999999999999876532 23689999999999999988877764332 23333444566777666
Q ss_pred cCCCcc
Q 006025 465 PHPGRV 470 (664)
Q Consensus 465 ~~~~~~ 470 (664)
.....+
T Consensus 374 ~~~~~~ 379 (538)
T PRK06183 374 RALNYL 379 (538)
T ss_pred HhhhcC
Confidence 554443
No 21
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=2.5e-37 Score=328.91 Aligned_cols=335 Identities=24% Similarity=0.312 Sum_probs=218.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
.||+||||||+|+++|+.|+++|++|+|||+.+... ..| .++.+.++++++|+++ |+++++...+... ..+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~-~~g---~~i~~~~~a~~~L~~l--Gl~~~~~~~~~~~-~~~~- 73 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR-PGG---QAIDVRGPALDVLERM--GLLAAAQEHKTRI-RGAS- 73 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCc---eeeeeCchHHHHHHhc--CCHHHHHhhccCc-cceE-
Confidence 489999999999999999999999999999986532 222 2578899999999999 7888886554322 1221
Q ss_pred cccCCCCceeeeccCCCc-ccccCCCeEEeeCHHHHHHHHHHhcCC-ceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccE
Q 006025 158 LVDGISGSWYIKFDTFTP-AAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adl 235 (664)
+.+. .+..........+ ....+.+ .+.+.|.+|.+.|.+.+.. ..++++++|+++++++++++|++++|++++||+
T Consensus 74 ~~~~-~g~~~~~~~~~~~~~~~~~~~-~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adl 151 (372)
T PRK05868 74 FVDR-DGNELFRDTESTPTGGPVNSP-DIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDL 151 (372)
T ss_pred EEeC-CCCEEeecccccccCCCCCCc-eEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCE
Confidence 2221 1222211110000 0011112 3578899999998876533 358899999999988889999999999999999
Q ss_pred EEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCccccceEE-EecCeeEEEEeeCCCCeEEE--EEEeeCC-CC
Q 006025 236 LIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRV-FLGHKQYFVSSDVGAGKMQW--YAFHKEP-AG 311 (664)
Q Consensus 236 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~ 311 (664)
||||||.+|.||+.+++........+..+..+... +.......+.. +.+.+.++..++..++...+ +.+.... ..
T Consensus 152 vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (372)
T PRK05868 152 VIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTV-PNFLELDYWQTWHYGDSTMAGVYSARNNTEARAALAFMDTELRI 230 (372)
T ss_pred EEECCCCCchHHHHhcCCcccceeecceEEEEEEc-CCCCCCCcceEEEecCCcEEEEEecCCCCceEEEEEEecCCccc
Confidence 99999999999999955432221111112222111 22122222333 35666666777766543322 2222211 11
Q ss_pred CCCCCcchHHHHHHHHh--CCC-hhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHH
Q 006025 312 GVDGPEGKKERLLKIFE--GWC-DNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIE 388 (664)
Q Consensus 312 ~~~~~~~~~~~l~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~ 388 (664)
.........+.+.+.|. .|. +.+.+.+..... +. .......+..+|++|||+|+|||||+++|+.|||+|+||+
T Consensus 231 ~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~--~~-~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~GqGa~~Ale 307 (372)
T PRK05868 231 DYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPD--FY-FDEMSQILMDRWSRGRVALVGDAGYCCSPLSGQGTSVALL 307 (372)
T ss_pred ccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCc--ee-eccceEEecCCCCCCCeeeeecccccCCCccCccHHHHHH
Confidence 11112234677788887 575 334443322221 11 1111223456899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhH
Q 006025 389 DGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 435 (664)
Q Consensus 389 Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s 435 (664)
||..||++|... ..++.++|+.||+.++|++.+.|.+.
T Consensus 308 Da~~La~~L~~~---------~~~~~~al~~ye~~~~~~~~~~q~~~ 345 (372)
T PRK05868 308 GAYILAGELKAA---------GDDYQLGFANYHAEFHGFVERNQWLV 345 (372)
T ss_pred HHHHHHHHHHhc---------CCCHHHHHHHHHHHHhHHHHHhhhhh
Confidence 999999999653 22478999999999888888766543
No 22
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=6.6e-39 Score=344.69 Aligned_cols=373 Identities=18% Similarity=0.175 Sum_probs=242.4
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~ 153 (664)
.+..+||+||||||+|+++|+.|+++|++|+|||+.+.... .....+.++++++|+++ |+++++....... .
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~-----~r~~~l~~~s~~~l~~l--gl~~~~~~~~~~~-~ 75 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYAD-----LRTTALLGPSIRFLERL--GLWARLAPHAAPL-Q 75 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCC-----cchhhCcHHHHHHHHHh--CchhhhHhhccee-e
Confidence 45568999999999999999999999999999999864321 12356788899999999 7888886544221 1
Q ss_pred cccccccCCCCce----eeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCeEEEEEcC
Q 006025 154 RINGLVDGISGSW----YIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLEN 227 (664)
Q Consensus 154 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~~ 227 (664)
.+. +.+.. +.. ...++. ......++++.++|..|.+.|.+.+.. .+.+++++|++++.++++++|++++
T Consensus 76 ~~~-~~~~~-g~~~~~~~~~~~~---~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~ 150 (388)
T PRK07494 76 SMR-IVDAT-GRLIRAPEVRFRA---AEIGEDAFGYNIPNWLLNRALEARVAELPNITRFGDEAESVRPREDEVTVTLAD 150 (388)
T ss_pred EEE-EEeCC-CCCCCCceEEEcH---HhcCCCccEEEeEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEEEEECC
Confidence 222 22211 111 111211 011123457889999999999887632 2347799999999989999999999
Q ss_pred CcEEeccEEEEecCCchhhhhhhcC-CCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEe
Q 006025 228 GQCYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFH 306 (664)
Q Consensus 228 g~~i~adlvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (664)
|++++||+||+|||.+|.+|+.+.. .....|.+. ++...... +.+.....+..+.+.+ .+..+|..++...+++..
T Consensus 151 g~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~-~~~~~v~~-~~~~~~~~~~~~~~~g-~~~~~Pl~~~~~~~v~~~ 227 (388)
T PRK07494 151 GTTLSARLVVGADGRNSPVREAAGIGVRTWSYPQK-ALVLNFTH-SRPHQNVSTEFHTEGG-PFTQVPLPGRRSSLVWVV 227 (388)
T ss_pred CCEEEEeEEEEecCCCchhHHhcCCCceecCCCCE-EEEEEEec-cCCCCCEEEEEeCCCC-cEEEEECCCCcEEEEEEC
Confidence 9999999999999999999999843 234455543 33322221 1111122233444444 444556665555444332
Q ss_pred eCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCc-cceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhH
Q 006025 307 KEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (664)
Q Consensus 307 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ 385 (664)
..+.. ........+.+.+.+..+. .+.+..... .....+++... ...+|..+|++|+|||||.++|++|||+|+
T Consensus 228 ~~~~~-~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~l~~~-~~~~~~~~rv~LiGDAAH~~~P~~GqG~n~ 302 (388)
T PRK07494 228 RPAEA-ERLLALSDAALSAAIEERM---QSMLGKLTLEPGRQAWPLSGQ-VAHRFAAGRTALVGEAAHVFPPIGAQGLNL 302 (388)
T ss_pred CHHHH-HHHHcCCHHHHHHHHHHHH---hhhcCCeEEccCCcEeechHH-HHHhhccCceEEEEhhhhcCCchhhcccch
Confidence 11100 0000111233333332221 111111100 11122333322 235789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeeccc
Q 006025 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (664)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (664)
||+||..|+++|..... +.....+|+.|+++|++++..++. .++. +...|.+...+++.+|++++.
T Consensus 303 ~l~Da~~La~~L~~~~~-------~~~~~~~L~~Y~~~R~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~R~~~l~ 368 (388)
T PRK07494 303 GLRDVATLVEIVEDRPE-------DPGSAAVLAAYDRARRPDILSRTA------SVDL-LNRSLLSDFLPVQDLRAAGLH 368 (388)
T ss_pred hHHHHHHHHHHHHhcCC-------CcchHHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHcCCchHHHHHHHHHHH
Confidence 99999999999987421 233568999999999999975443 3333 556777888889999999998
Q ss_pred CCCccc--ceeeeehhhh
Q 006025 466 HPGRVG--GRFFIDLAMP 481 (664)
Q Consensus 466 ~~~~~~--~~~l~~~~~g 481 (664)
.++.++ ++++++++||
T Consensus 369 ~~~~~~~~~~~~~~~~~~ 386 (388)
T PRK07494 369 LLYSFGPLRRLFMREGLG 386 (388)
T ss_pred HHhhCHHHHHHHHHHhcC
Confidence 888877 4888888875
No 23
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=4.4e-38 Score=341.51 Aligned_cols=376 Identities=20% Similarity=0.198 Sum_probs=236.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
..+||+||||||+|+++|+.|+++|++|+|+||.+.+.... .+.++.++++++++|+.+ |+++++...+.... .+
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~g~~~~l~~~~~~~L~~l--Gl~~~l~~~~~~~~-~~ 91 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAA--KGQAYALSLLSARIFEGI--GVWEKILPQIGKFR-QI 91 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCC--CCcEEEechHHHHHHHHC--ChhhhhHhhcCCcc-EE
Confidence 46899999999999999999999999999999986542211 123578999999999999 78888876543221 11
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEEEEEcCC---c
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENG---Q 229 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~~g---~ 229 (664)
. +.+.. +.....+.... ......++.+.+..|.+.|.+.+. ...++++++|++++.+++++.|++.++ .
T Consensus 92 ~-~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~ 166 (415)
T PRK07364 92 R-LSDAD-YPGVVKFQPTD---LGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQ 166 (415)
T ss_pred E-EEeCC-CCceeeecccc---CCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcce
Confidence 1 22221 11122232111 011223455555578888877653 345788999999998888888888743 4
Q ss_pred EEeccEEEEecCCchhhhhhhcC-CCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeC
Q 006025 230 CYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKE 308 (664)
Q Consensus 230 ~i~adlvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (664)
+++||+||||||.+|.||+.+.. .....|.+ .++...... +.......+..|...+ .+..+|.+++...|++....
T Consensus 167 ~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~ 243 (415)
T PRK07364 167 TLQSKLVVAADGARSPIRQAAGIKTKGWKYWQ-SCVTATVKH-EAPHNDIAYERFWPSG-PFAILPLPGNRCQIVWTAPH 243 (415)
T ss_pred EEeeeEEEEeCCCCchhHHHhCCCceeecCCC-EEEEEEEEc-cCCCCCEEEEEecCCC-CeEEeECCCCCEEEEEECCH
Confidence 69999999999999999998843 22333433 223322221 1111222233344443 34556776666555443211
Q ss_pred CCCC---CCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhH
Q 006025 309 PAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (664)
Q Consensus 309 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ 385 (664)
.... ........+.+.+.+..|...+ .... ....+++... ...+|..+|++|+|||||.++|++|||+|+
T Consensus 244 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~--~~~~~~~~~~-~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ 316 (415)
T PRK07364 244 AQAKALLALPEAEFLAELQQRYGDQLGKL----ELLG--DRFLFPVQLM-QSDRYVQHRLALVGDAAHCCHPVGGQGLNL 316 (415)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhhhhcCc----eecC--CCceecchhh-hhhhhcCCcEEEEecccccCCCcccccHhH
Confidence 1000 0000111222233333332211 0111 1112233222 346899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeeccc
Q 006025 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (664)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (664)
||+||..|+++|...++.+ .+.....+|+.|+++|++++..++.+++. +..+|..+..+...+|+..+.
T Consensus 317 al~DA~~La~~L~~~~~~~----~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~-------~~~~~~~~~~~~~~~r~~~~~ 385 (415)
T PRK07364 317 GIRDAAALAQVLQTAHQRG----EDIGSLAVLKRYERWRKRENWLILGFTDL-------LDRLFSNQWWPLVVVRRLGLW 385 (415)
T ss_pred HHHHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHH
Confidence 9999999999998875432 11122489999999999999877665543 334555666677888998887
Q ss_pred CCCccc--ceeeeehhhhh
Q 006025 466 HPGRVG--GRFFIDLAMPL 482 (664)
Q Consensus 466 ~~~~~~--~~~l~~~~~g~ 482 (664)
+++.++ ++++++++||+
T Consensus 386 ~~~~~~~~~~~~~~~~~g~ 404 (415)
T PRK07364 386 LLRHVPPLKRLALRLMTGL 404 (415)
T ss_pred HHhhCHHHHHHHHHHHcCC
Confidence 777654 46777777654
No 24
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=7.2e-38 Score=338.58 Aligned_cols=375 Identities=20% Similarity=0.216 Sum_probs=243.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC--CeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
+||+||||||+|+++|+.|+++| ++|+|+||.+..... ....++.++++++++|+.+ |+++.+...+.... .+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~--~~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~~~-~~ 76 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWS--RDPRASAIAAAARRMLEAL--GVWDEIAPEAQPIT-DM 76 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCC--CCcceEEecHHHHHHHHHC--CChhhhhhhcCccc-EE
Confidence 79999999999999999999996 999999998642211 1123678999999999999 78888876543221 22
Q ss_pred cccccCCCCc----eeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCeEEEEEcCCc
Q 006025 156 NGLVDGISGS----WYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQ 229 (664)
Q Consensus 156 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~~g~ 229 (664)
. +.+...+. ....++. ....+.++.+.++|..|++.|.+.+.. ..++++++|++++.+++.+.|++++|+
T Consensus 77 ~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~ 152 (403)
T PRK07333 77 V-ITDSRTSDPVRPVFLTFEG---EVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGS 152 (403)
T ss_pred E-EEeCCCCCCCccceEEecc---cccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCC
Confidence 1 22211110 1122211 111245567789999999999887632 358889999999998899999999999
Q ss_pred EEeccEEEEecCCchhhhhhhcCC-CCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeC
Q 006025 230 CYAGDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKE 308 (664)
Q Consensus 230 ~i~adlvVgADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (664)
+++||+||+|||.+|.+|+.+... ....|.. .++......... ........+... ..+..+|..++...|++....
T Consensus 153 ~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~-g~~~~~Pl~~~~~~~~~~~~~ 229 (403)
T PRK07333 153 VLEARLLVAADGARSKLRELAGIKTVGWDYGQ-SGIVCTVEHERP-HGGRAEEHFLPA-GPFAILPLKGNRSSLVWTERT 229 (403)
T ss_pred EEEeCEEEEcCCCChHHHHHcCCCcccccCCC-EEEEEEEEcCCC-CCCEEEEEeCCC-CceEEeECCCCCeEEEEECCH
Confidence 999999999999999999988432 2334443 333333222111 112223333333 345556777776655442211
Q ss_pred CCCC---CCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhH
Q 006025 309 PAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCM 385 (664)
Q Consensus 309 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~ 385 (664)
.... ........+.+.+.|..|...+. ... ....+++. .....+|..+||+|+|||||.++|++|||+|+
T Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~--~~~~~~~~-~~~~~~~~~grv~LvGDAAH~~~P~~GqG~n~ 302 (403)
T PRK07333 230 ADAERLVALDDLVFEAELEQRFGHRLGELK----VLG--KRRAFPLG-LTLARSFVAPRFALVGDAAHGIHPIAGQGLNL 302 (403)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhhhhcCceE----ecc--CccEeech-hhhhhhccCCCEEEEechhhcCCCccccchhh
Confidence 0000 00000111223333332221110 000 00112221 23456899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeeccc
Q 006025 386 AIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIP 465 (664)
Q Consensus 386 al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~ 465 (664)
||+||.+|+++|...++.+ .+.....+|+.|+++|++++..++..++. +..+|..+..+...+|+..+.
T Consensus 303 ai~Da~~La~~L~~~~~~~----~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~r~~~~~ 371 (403)
T PRK07333 303 GLKDVAALAEVVVEAARLG----LDIGSLDVLERYQRWRRFDTVRMGVTTDV-------LNRLFSNDSTLLRSVRDIGLG 371 (403)
T ss_pred hHHHHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHH
Confidence 9999999999999876532 11235789999999999999877665543 334555566677888998887
Q ss_pred CCCccc--ceeeeehhhhh
Q 006025 466 HPGRVG--GRFFIDLAMPL 482 (664)
Q Consensus 466 ~~~~~~--~~~l~~~~~g~ 482 (664)
..+.++ +++++++++|+
T Consensus 372 ~~~~~~~~~~~~~~~~~g~ 390 (403)
T PRK07333 372 LVDRLPKLKSFFIRQAAGL 390 (403)
T ss_pred HHhcCHHHHHHHHHHHhCc
Confidence 776655 48888888764
No 25
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=9e-37 Score=334.20 Aligned_cols=367 Identities=19% Similarity=0.198 Sum_probs=233.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
..+||+||||||+|+++|+.|+++|++|+|+||.+.+... + .....++++++++|+.+ |+++++...+.....
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~-~--~Ra~~l~~~s~~~L~~l--Gl~~~l~~~~~~~~~-- 74 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELV-G--SRAGGLHARTLEVLDQR--GIADRFLAQGQVAQV-- 74 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC-C--cceeeECHHHHHHHHHc--CcHHHHHhcCCcccc--
Confidence 3579999999999999999999999999999998643211 1 12467999999999999 788888765432110
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCeEEEEEcCCcEEec
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a 233 (664)
..+ . ...++... ....+++.+.+.+..|++.|.+.+.. ..++++++|++++++++++.+++.+|++++|
T Consensus 75 ~~~-----~--~~~~~~~~--~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a 145 (488)
T PRK06834 75 TGF-----A--ATRLDISD--FPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRA 145 (488)
T ss_pred cee-----e--eEeccccc--CCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEe
Confidence 000 0 11111111 11123556788899999999887632 3588999999999999999999988889999
Q ss_pred cEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCC-CCeEEEEEEeeCCCC
Q 006025 234 DLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVG-AGKMQWYAFHKEPAG 311 (664)
Q Consensus 234 dlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 311 (664)
|+||+|||++|.||+.+. ......|... .+....... .... +..+......+...+.. ++.+.+.+.....
T Consensus 146 ~~vVgADG~~S~vR~~lgi~~~g~~~~~~-~~~~dv~~~--~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-- 218 (488)
T PRK06834 146 QYLVGCDGGRSLVRKAAGIDFPGWDPTTS-YLIAEVEMT--EEPE--WGVHRDALGIHAFGRLEDEGPVRVMVTEKQV-- 218 (488)
T ss_pred CEEEEecCCCCCcHhhcCCCCCCCCcceE-EEEEEEEec--CCCC--cceeeCCCceEEEeccCCCCeEEEEEecCCC--
Confidence 999999999999999983 3445555432 222222111 1111 11222222233333333 4444333322111
Q ss_pred CCCCCcchHHHHHHHHhCCCh-hHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHH
Q 006025 312 GVDGPEGKKERLLKIFEGWCD-NVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (664)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da 390 (664)
... .....+++.+.+..... .+. ......+..+.. ......+|..|||+|+|||||.++|++|||||+||+||
T Consensus 219 ~~~-~~~~~~~~~~~l~~~~g~~~~----~~~~~~~~~~~~-~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA 292 (488)
T PRK06834 219 GAT-GEPTLDDLREALIAVYGTDYG----IHSPTWISRFTD-MARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDA 292 (488)
T ss_pred CCC-CCCCHHHHHHHHHHhhCCCCc----cccceeEEeccc-cceecccccCCcEEEEeeccccCCccccccccccHHHH
Confidence 111 11122333333322111 110 011111111111 12345689999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccCCCcc
Q 006025 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRV 470 (664)
Q Consensus 391 ~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 470 (664)
.+|+|+|+.++++. ....+|++|+++|++++..++..+..+. .++. .......+|+..+.+....
T Consensus 293 ~nLawkLa~vl~g~-------~~~~lLd~Ye~eRrp~~~~~~~~t~~~~-------~~~~-~~~~~~~lR~~~~~~~~~~ 357 (488)
T PRK06834 293 VNLGWKLAQVVKGT-------SPESLLDTYHAERHPVAARVLRNTMAQV-------ALLR-PDDRTEALRDIVAELLGMD 357 (488)
T ss_pred HHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhhc-CChHHHHHHHHHHHHhcCc
Confidence 99999999987642 2468999999999999998776554322 1232 3344567788776555443
Q ss_pred c-ceeeeehhhhhhHHh
Q 006025 471 G-GRFFIDLAMPLMLSW 486 (664)
Q Consensus 471 ~-~~~l~~~~~g~~l~~ 486 (664)
+ ++.+...++++.+.|
T Consensus 358 ~~~~~~~~~~~g~~~~y 374 (488)
T PRK06834 358 EPRKRIAAMMSGLDIHY 374 (488)
T ss_pred HHHHHHHHHHhcCCccc
Confidence 3 366666667766665
No 26
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=8.7e-38 Score=336.31 Aligned_cols=366 Identities=16% Similarity=0.163 Sum_probs=236.1
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcC----CeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhc
Q 006025 73 SENKKLRILVAGGGIGGLVFALAAKRKG----FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAG 148 (664)
Q Consensus 73 ~~~~~~~v~i~g~g~~g~~~a~~l~~~g----~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~ 148 (664)
+....+||+||||||+|+++|+.|+++| ++|+|+|+.+.+.. . ....++.+++.++++|+.+ |+|++. .
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~-~-~~~r~~~l~~~~~~~L~~l--g~~~~~---~ 79 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS-A-NDPRAIALSHGSRVLLETL--GAWPAD---A 79 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC-C-CCceEEEecHHHHHHHHhC--CCchhc---C
Confidence 4455689999999999999999999997 47999999753221 1 1123678999999999999 677752 1
Q ss_pred cccCcccccccc-CCCCceeeeccCCCcccccCC-CeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCeEEEE
Q 006025 149 CVTGDRINGLVD-GISGSWYIKFDTFTPAAEKGL-PVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVV 224 (664)
Q Consensus 149 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~ 224 (664)
. ....+. +.+ +..+...+... ..+. +.++.++|..|++.|.+++.. ..+++++++++++.++++|+++
T Consensus 80 ~-~~~~~~-~~~~~~~g~~~~~~~------~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~ 151 (398)
T PRK06996 80 T-PIEHIH-VSQRGHFGRTLIDRD------DHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLA 151 (398)
T ss_pred C-cccEEE-EecCCCCceEEeccc------ccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEE
Confidence 1 111221 121 11122222211 1122 247899999999999988643 3578899999999999999999
Q ss_pred EcCC---cEEeccEEEEecCC-chhhhhhhcCC-CCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCe
Q 006025 225 LENG---QCYAGDLLIGADGI-WSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGK 299 (664)
Q Consensus 225 ~~~g---~~i~adlvVgADG~-~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (664)
+.++ ++++||+||+|||+ +|.+|+.++.. ....|.+ .++++..... ...+...+..+...+. +...|..++.
T Consensus 152 ~~~~~g~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~-~~~~~~v~~~-~~~~~~~~~~~~~~G~-~~~lp~~~~~ 228 (398)
T PRK06996 152 LGTPQGARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQ-TAIVGTVTVS-APRPGWAWERFTHEGP-LALLPLGGPR 228 (398)
T ss_pred ECCCCcceEEeeeEEEECCCCCchHHHHHcCCCceeeecCC-eEEEEEEEcc-CCCCCEEEEEecCCCC-eEEeECCCCC
Confidence 9865 68999999999997 57888887443 3444544 5555544321 1122233444544444 4444555433
Q ss_pred ---EEEEEEeeCCCC---CCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcC
Q 006025 300 ---MQWYAFHKEPAG---GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVH 373 (664)
Q Consensus 300 ---~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh 373 (664)
+.+++....... .........+.+.+.|..+...+. ...+ ...+++. .....+|..|||+|+|||||
T Consensus 229 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~--~~~~~l~-~~~~~~~~~grv~LiGDAAH 301 (398)
T PRK06996 229 QADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFT----RIAG--RHAFPLG-LNAARTLVNGRIAAVGNAAQ 301 (398)
T ss_pred CCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCceE----Eecc--eEEEeee-cccccceecCCEEEEEhhhc
Confidence 333332211000 000111122333333333221110 0000 1112222 33345899999999999999
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCC
Q 006025 374 AMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGL 453 (664)
Q Consensus 374 ~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 453 (664)
.++|++|||+|+||+||.+|+++|... + ....+|+.|+++|++++..++..++. +..+|.++.
T Consensus 302 ~~~P~~GQG~n~ai~Da~~La~~L~~~--~--------~~~~~L~~Y~~~R~~~~~~~~~~s~~-------l~~~~~~~~ 364 (398)
T PRK06996 302 TLHPVAGQGLNLGLRDAHTLADALSDH--G--------ATPLALATFAARRALDRRVTIGATDL-------LPRLFTVDS 364 (398)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHhc--C--------CcHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCc
Confidence 999999999999999999999999652 1 12467999999999999987776654 334566666
Q ss_pred CcccceeeecccCCCccc--ceeeeehhh
Q 006025 454 GPLSFLTKFRIPHPGRVG--GRFFIDLAM 480 (664)
Q Consensus 454 ~~~~~~r~~~l~~~~~~~--~~~l~~~~~ 480 (664)
.++..+|++++..++.++ |+++++++|
T Consensus 365 ~~~~~~R~~~l~~~~~~~~~k~~~~~~~~ 393 (398)
T PRK06996 365 RPLAHLRGAALTALEFVPPLKHALARQMM 393 (398)
T ss_pred hHHHHHHhHHHHHHhhCHHHHHHHHHHHc
Confidence 778899999998888876 477777765
No 27
>PRK06847 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=323.61 Aligned_cols=340 Identities=28% Similarity=0.387 Sum_probs=233.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
+..||+||||||+|+++|+.|++.|++|+|+|+.+.+.. . +.++.+.++++++|+.+ |+++.+...+.... .+
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~-~---g~g~~l~~~~~~~l~~~--gl~~~~~~~~~~~~-~~ 75 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRV-Y---GAGITLQGNALRALREL--GVLDECLEAGFGFD-GV 75 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcc-C---CceeeecHHHHHHHHHc--CCHHHHHHhCCCcc-ce
Confidence 356999999999999999999999999999999864322 2 23688999999999999 77888776543221 21
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCCcEEec
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a 233 (664)
. +.+ ..+.....++... .....++....+.|..|.+.|.+.+. ...++++++|++++.+++++.+++.+|+++++
T Consensus 76 ~-~~~-~~g~~~~~~~~~~-~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a 152 (375)
T PRK06847 76 D-LFD-PDGTLLAELPTPR-LAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRY 152 (375)
T ss_pred E-EEC-CCCCEEEecCccc-ccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEc
Confidence 1 122 1222222222110 01112233457899999999988763 23588899999999888889999999999999
Q ss_pred cEEEEecCCchhhhhhhcCC-CCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCCCCC
Q 006025 234 DLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG 312 (664)
Q Consensus 234 dlvVgADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (664)
|+||+|||.+|.+|+.+.+. ..+.|.+..++.+..... ...+ ....|.+++..+..++..++...|+.....+...
T Consensus 153 d~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 229 (375)
T PRK06847 153 DLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRP-AEVD--RSLMYLGPTTKAGVVPLSEDLMYLFVTEPRPDNP 229 (375)
T ss_pred CEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCC-CCcc--ceEEEeCCCcEEEEEcCCCCeEEEEEeccCcccc
Confidence 99999999999999988443 356677766666554322 1121 2345666666677777777666555443322211
Q ss_pred CCCCcchHHHHHHHHhCCChh-HHHHHHcCCc-cceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHH
Q 006025 313 VDGPEGKKERLLKIFEGWCDN-VVDLILATDE-EAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (664)
Q Consensus 313 ~~~~~~~~~~l~~~~~~~~~~-~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da 390 (664)
........+.+.+.+..|.+. .......... ..+..+++.......+|..+||+|+|||||.++|++|||+|+||+||
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~GqG~n~aieDA 309 (375)
T PRK06847 230 RIEPDTLAALLRELLAPFGGPVLQELREQITDDAQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHLAQGAGMAIEDA 309 (375)
T ss_pred cCChHHHHHHHHHHHhhcCchHHHHHHHhcCCccceeeccHhhccCCCCccCCeEEEEechhccCCCCccccHHHHHHHH
Confidence 111222345566677778653 3333322221 12222333333334579999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHH
Q 006025 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 438 (664)
Q Consensus 391 ~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~ 438 (664)
..|+++|... ....++|+.|+++|++++..++..++..
T Consensus 310 ~~La~~L~~~----------~~~~~al~~Y~~~R~~r~~~~~~~s~~~ 347 (375)
T PRK06847 310 IVLAEELARH----------DSLEAALQAYYARRWERCRMVVEASARI 347 (375)
T ss_pred HHHHHHHhhC----------CcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999752 2457899999999999999998887643
No 28
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=100.00 E-value=2.9e-37 Score=310.75 Aligned_cols=334 Identities=35% Similarity=0.469 Sum_probs=234.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
.+|+|||||++|+++|+.|++.|++|+|+|+.. ..+..| .++.+.-+++++|+++ ++.+.+...+.+...++.
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e-~~R~~g---~si~L~~ng~~aLkai--~~~e~i~~~gip~~~~v~- 75 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESRE-DPRGEG---TSINLALNGWRALKAI--GLKEQIREQGIPLGGRVL- 75 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc-ccccCC---cceeehhhHHHHHHHc--ccHHHHHHhcCcccceee-
Confidence 489999999999999999999999999999954 334433 3678888899999999 688888888776655542
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCC------eEEEEEeeCCeEEEEEcCCcEE
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNES------NVIDFKDHGDKVSVVLENGQCY 231 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~------~v~~v~~~~~~v~v~~~~g~~i 231 (664)
..+.++++...+....+.. .....+.|..++.+|.++++...++++. ....++..+....+.+.+|.++
T Consensus 76 -~~~~sg~~~~~~~~~~~~~----~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~~~~~~~~v~l~~g~~~ 150 (420)
T KOG2614|consen 76 -IHGDSGKEVSRILYGEPDE----YILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIETLGKKLVVHLSDGTTV 150 (420)
T ss_pred -eecCCCCeeEecccCCchH----HHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceeeecccccceecCCCcEE
Confidence 3444555555554322211 1123556777888888888766677764 4445555566677889999999
Q ss_pred eccEEEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCCCC
Q 006025 232 AGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG 311 (664)
Q Consensus 232 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (664)
++|++|||||++|.||+++.... +.|.++.+|+++. +.+...+. ....+...+..+...+.+.....|+++...+-.
T Consensus 151 ~~dlligCDGa~S~Vr~~l~~~~-p~~~~~~ayrg~~-~~~~~~~~-~~~vf~~~~~~~~~~~~~~~~~~~y~~~~k~~t 227 (420)
T KOG2614|consen 151 KGDLLIGCDGAYSKVRKWLGFKE-PRYDGSQAYRGLG-FIPNGIPF-GKKVFAIYGNGLHSWPRPGFHLIAYWFLDKSLT 227 (420)
T ss_pred EeeEEEEcCchHHHHHHHhcccC-CcceeEEEEeeee-eccCCCCc-ccceecccCCeEEEcccCCceEEEEEeecCCcc
Confidence 99999999999999999995443 8899889999887 44443322 222333333344444455555555555533322
Q ss_pred C-----CCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCc----cccCCcEEEEccCcCcCCCCCccc
Q 006025 312 G-----VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIF----TWGRGRVTLLGDSVHAMQPNLGQG 382 (664)
Q Consensus 312 ~-----~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~rv~LvGDAAh~~~P~~GqG 382 (664)
. ...++.......+....|...+.+.+.....+.+...++..+.|.. ....++|+|+|||||.|.|+.|||
T Consensus 228 ~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~Pf~GQG 307 (420)
T KOG2614|consen 228 STDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMTPFLGQG 307 (420)
T ss_pred cccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccCCccccc
Confidence 1 1123333444566777888888888888887777777677666542 334678999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCChhh--------HHHHHHHHHHHhhh
Q 006025 383 GCMAIEDGYQLAVELEKACKKSNESKTPID--------IVSALKSYERARRL 426 (664)
Q Consensus 383 ~n~al~Da~~La~~L~~~~~~~~~~g~~~~--------~~~~L~~Ye~~R~~ 426 (664)
+|+|++|+.+|+++|.++.+.-...+.... .+.++..|..+|.-
T Consensus 308 ~n~a~ED~~VLa~~L~~~~~d~s~~~~~~s~~~e~~~~ie~a~~~Y~~~r~~ 359 (420)
T KOG2614|consen 308 GNCAFEDCVVLAECLDEAINDVSLAGEEYSRENESHAIIELAMYSYKEERWR 359 (420)
T ss_pred ccchHHHHHHHHHHHHHhccchhccccceecccchhHHHHHHHHHHHHHHHH
Confidence 999999999999999998763222222222 55677777777743
No 29
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-36 Score=336.10 Aligned_cols=334 Identities=21% Similarity=0.306 Sum_probs=216.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
+.+||+||||||+||++|+.|+++|++|+|+||.+.+... ..+..++++++++|+++ |+++++.+.+..... .
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~----~ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~~-~ 74 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPG----SRGKGIQPRTQEVFDDL--GVLDRVVAAGGLYPP-M 74 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcC----ccceeecHHHHHHHHHc--CcHHHHHhcCccccc-e
Confidence 3579999999999999999999999999999998654322 12577899999999999 788888776543221 1
Q ss_pred cccccCCCCceeeeccCC---CcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCeEEEEE---cC
Q 006025 156 NGLVDGISGSWYIKFDTF---TPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVL---EN 227 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~---~~ 227 (664)
. ++... +. ....... .......++..+.+.|..|++.|.+.+.. ..++++++|++++++++++++++ .+
T Consensus 75 ~-~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~ 151 (502)
T PRK06184 75 R-IYRDD-GS-VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAG 151 (502)
T ss_pred e-EEeCC-ce-EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCC
Confidence 1 11111 11 1111100 00011123445788999999999887632 35889999999999888888887 56
Q ss_pred CcEEeccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEecCe-eEEEEeeCCCCe-EEEEE
Q 006025 228 GQCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHK-QYFVSSDVGAGK-MQWYA 304 (664)
Q Consensus 228 g~~i~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~ 304 (664)
+++++||+||+|||++|.||+++. ......+.....+...... .......+..|.... ..+..++..++. +.+..
T Consensus 152 ~~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 229 (502)
T PRK06184 152 EETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSL--TGLDRDAWHQWPDGDMGMIALCPLPGTDLFQIQA 229 (502)
T ss_pred eEEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEe--ecCCCcceEEccCCCCcEEEEEEccCCCeEEEEE
Confidence 678999999999999999999983 3333334321112221111 111222334444433 455556665443 33332
Q ss_pred EeeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeeccc--CCCCccccCCcEEEEccCcCcCCCCCccc
Q 006025 305 FHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGDSVHAMQPNLGQG 382 (664)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~rv~LvGDAAh~~~P~~GqG 382 (664)
.. +... ......+.+.+.+..+..... .....+.....+. .....+|..|||+|+|||||.++|++|||
T Consensus 230 ~~--~~~~--~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG 300 (502)
T PRK06184 230 PL--PPGG--EPDLSADGLTALLAERTGRTD-----IRLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQG 300 (502)
T ss_pred Ec--CCCc--cCCCCHHHHHHHHHHhcCCCC-----cceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCccccc
Confidence 22 2111 112234555555554432100 0000111111221 12245799999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHH
Q 006025 383 GCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSA 438 (664)
Q Consensus 383 ~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~ 438 (664)
||+||+||.+|+|+|+.++++ ..+.+|++|+++|++++..++..+...
T Consensus 301 ~n~gi~DA~~LawkLa~vl~g--------~~~~lL~~Ye~eR~p~~~~~~~~s~~~ 348 (502)
T PRK06184 301 LNTSVQDAYNLGWKLAAVLAG--------APEALLDTYEEERRPVAAAVLGLSTEL 348 (502)
T ss_pred ccchHHHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988753 226799999999999999988877643
No 30
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=335.49 Aligned_cols=375 Identities=17% Similarity=0.182 Sum_probs=237.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccC-CCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~-~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
++||+||||||+|+++|+.|+++|++|+|+||.+.+... ....+..+.++++++++|+++ |+++++...+.......
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~l--Gl~~~~~~~~~~~~~~~ 80 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRL--GAWDRIPEDEISPLRDA 80 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHC--CChhhhccccCCccceE
Confidence 589999999999999999999999999999998653210 111123567899999999999 77887755432121121
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEEEEEcCCcEEe
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ 232 (664)
. +.++.. .....++.. .......++.+.|..|.+.|.+.+. ...++++++|++++.+++.+.|++++|++++
T Consensus 81 ~-~~~~~~-~~~~~~~~~---~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~ 155 (392)
T PRK09126 81 K-VLNGRS-PFALTFDAR---GRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLT 155 (392)
T ss_pred E-EEcCCC-CceeEeehh---hcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEE
Confidence 1 122221 112222211 0111234577899999998887752 3468899999999988888999999999999
Q ss_pred ccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCCCC
Q 006025 233 GDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG 311 (664)
Q Consensus 233 adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (664)
||+||+|||.+|.+|+.+. ......|.. ..+......... .......|++.+..++.+|..++.+.|++.......
T Consensus 156 a~~vI~AdG~~S~vr~~~g~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~ 232 (392)
T PRK09126 156 ARLLVAADSRFSATRRQLGIGADMHDFGR-TMLVCRMRHELP--HHHTAWEWFGYGQTLALLPLNGHLSSLVLTLPPDQI 232 (392)
T ss_pred eCEEEEeCCCCchhhHhcCCCccccccCC-eEEEEEEeccCC--CCCEEEEEecCCCCeEEeECCCCCEEEEEECCHHHH
Confidence 9999999999999999984 222233433 223222221111 112233455666666777887776666654321100
Q ss_pred C---CCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHH
Q 006025 312 G---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIE 388 (664)
Q Consensus 312 ~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~ 388 (664)
. ........+.+.+.|..+.... .. ......+++.. ....+|..+|++|+|||||.++|++|||+|+||+
T Consensus 233 ~~~~~~~~~~~~~~l~~~~~~~~~~~----~~--~~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~ai~ 305 (392)
T PRK09126 233 EALLALDPEAFAAEVTARFKGRLGAM----RL--VSSRHAYPLVA-VYAHRFVAKRFALIGDAAVGMHPVTAHGFNLGLK 305 (392)
T ss_pred HHHHcCCHHHHHHHHHHHHhhhccCe----EE--cCCCcEeechH-HHHHHHhhcceEEEehhhhcCCCcccchhhhhHH
Confidence 0 0000011112222222211100 00 01111222222 2245789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccCCC
Q 006025 389 DGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPG 468 (664)
Q Consensus 389 Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~ 468 (664)
||..|+++|..+++.+ .+...+++|+.|+++|++++..++..++.+ ..++.....+.+.+|+..+....
T Consensus 306 da~~la~~L~~~~~~~----~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~r~~~~~~~~ 374 (392)
T PRK09126 306 GQDILARLILAAARRG----QDIGAASLLERYERKHRLATRPLYHATNAI-------AALYTDDRPPARLLRRAVLRAAN 374 (392)
T ss_pred HHHHHHHHHHHHHhcC----CCCccHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHCCCchHHHHHHHHHHHHHh
Confidence 9999999999876432 122346899999999999999887776542 23444455566788888877766
Q ss_pred ccc--ceeeeehh
Q 006025 469 RVG--GRFFIDLA 479 (664)
Q Consensus 469 ~~~--~~~l~~~~ 479 (664)
+++ ++++++++
T Consensus 375 ~~~~~~~~~~~~~ 387 (392)
T PRK09126 375 RFPPLKQAIAKQL 387 (392)
T ss_pred hChHHHHHHHHHH
Confidence 554 24444443
No 31
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=5.2e-36 Score=336.77 Aligned_cols=342 Identities=15% Similarity=0.185 Sum_probs=214.3
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHc-CCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~ 153 (664)
..++||+||||||+||++|+.|+++ |++|+|||+.+.+. ..| .+..++++++++|+.+ |+++++.+.+.....
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~-~~g---rA~gl~prtleiL~~l--Gl~d~l~~~g~~~~~ 103 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL-ELG---QADGIACRTMEMFQAF--GFAERILKEAYWINE 103 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC-CCC---eeeEEChHHHHHHHhc--cchHHHHhhcccccc
Confidence 4578999999999999999999995 99999999986432 222 2578999999999999 889998776543221
Q ss_pred cccccccCCC--CceeeeccCC--CcccccCCCeEEeeCHHHHHHHHHHhcC---C-ceEEeCCeEEEEEeeC---CeEE
Q 006025 154 RINGLVDGIS--GSWYIKFDTF--TPAAEKGLPVTRVISRMTLQQILAKAVG---D-EIILNESNVIDFKDHG---DKVS 222 (664)
Q Consensus 154 ~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~-~~i~~~~~v~~v~~~~---~~v~ 222 (664)
+. +++... .......... .......+++ ..++|..+++.|.+.+. . ..+++++++++++.++ ..|+
T Consensus 104 -~~-~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~-~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~ 180 (634)
T PRK08294 104 -TA-FWKPDPADPSTIVRTGRVQDTEDGLSEFPH-VIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVT 180 (634)
T ss_pred -eE-EEcCCCccccceeccccccccCCCCCCCcc-EeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEE
Confidence 11 122110 0111100000 0001112333 57899999999988763 2 2478899999998764 3488
Q ss_pred EEEc------CC--cEEeccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccc--cceEEEecCeeEEE
Q 006025 223 VVLE------NG--QCYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIES--VGYRVFLGHKQYFV 291 (664)
Q Consensus 223 v~~~------~g--~~i~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 291 (664)
|+++ +| ++++|||||||||++|.||+++. ......+.....+..+... .+++. ....+..+.+..++
T Consensus 181 v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~--~~~p~~~~~~~~~~~~~g~~~ 258 (634)
T PRK08294 181 VTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAV--TDFPDIRLKCAIQSASEGSIL 258 (634)
T ss_pred EEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEc--cCCCCcceEEEEecCCCceEE
Confidence 8875 35 58999999999999999999983 3333334432222222111 11111 11122334455666
Q ss_pred EeeCCCCe-EEEEEEeeCCC--CCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccC--CCCcc-------
Q 006025 292 SSDVGAGK-MQWYAFHKEPA--GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDR--TPIFT------- 359 (664)
Q Consensus 292 ~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~------- 359 (664)
.+|..++. +.|++...... ........+.+.+.+.+..+..+. ......+..|.++.. ....+
T Consensus 259 ~~P~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~-----~~~~~~v~w~s~y~i~~r~a~~f~~~~~~ 333 (634)
T PRK08294 259 LIPREGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPY-----TLDVKEVAWWSVYEVGQRLTDRFDDVPAE 333 (634)
T ss_pred EEECCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCC-----CCceeEEeEEecccccceehhhccccccc
Confidence 67777664 44443321111 111112234455555543321110 000111222333321 11112
Q ss_pred ---ccCCcEEEEccCcCcCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHH
Q 006025 360 ---WGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLAR 436 (664)
Q Consensus 360 ---~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~ 436 (664)
|..|||+|+|||||+++|.+|||||+||+||.+|+|+|+.++++. ..+++|+.|+++|+++++.++++++
T Consensus 334 ~~~~r~gRVfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~-------a~~~lL~tYe~ERrp~a~~li~~~~ 406 (634)
T PRK08294 334 EAGTRLPRVFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGR-------SPPELLHTYSAERQAIAQELIDFDR 406 (634)
T ss_pred ccccccCCEEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346999999999999999999999999999999999999987642 3468999999999999999888776
Q ss_pred HHH
Q 006025 437 SAA 439 (664)
Q Consensus 437 ~~~ 439 (664)
...
T Consensus 407 ~~~ 409 (634)
T PRK08294 407 EWS 409 (634)
T ss_pred HHH
Confidence 433
No 32
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-36 Score=333.62 Aligned_cols=332 Identities=19% Similarity=0.190 Sum_probs=217.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
.+||+||||||+||++|+.|+++|++|+||||.+.+... ..++.++++++++|+++ |+++++...+..... ..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~----~ra~~l~~~~~e~l~~l--Gl~~~l~~~~~~~~~-~~ 74 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPY----SKALTLHPRTLEILDMR--GLLERFLEKGRKLPS-GH 74 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC----cceeEecHHHHHHHHhc--CcHHHHHhhcccccc-eE
Confidence 379999999999999999999999999999998654321 23688999999999999 788888775532221 11
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEc--CC-cEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLE--NG-QCY 231 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~--~g-~~i 231 (664)
+.... + ...+.. .....++.+.+.|..+++.|.+.+. ...+++++++++++++++++++++. +| +++
T Consensus 75 -~~~~~-~--~~~~~~----~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i 146 (493)
T PRK08244 75 -FAGLD-T--RLDFSA----LDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTL 146 (493)
T ss_pred -Eeccc-c--cCCccc----CCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEE
Confidence 11110 0 111111 1123455678999999999987653 2358889999999998888888775 45 479
Q ss_pred eccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCCC
Q 006025 232 AGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (664)
Q Consensus 232 ~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (664)
+||+||+|||++|.||+.+. ......+.. ..+.+..... .........++.++..++.+|..++.+.|++......
T Consensus 147 ~a~~vVgADG~~S~vR~~lgi~~~g~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~P~~~~~~~~~~~~~~~~ 223 (493)
T PRK08244 147 TSSYVVGADGAGSIVRKQAGIAFPGTDATF-TAMLGDVVLK--DPPPSSVLSLCTREGGVMIVPLSGGIYRVLIIDPERP 223 (493)
T ss_pred EeCEEEECCCCChHHHHhcCCCccCCCcce-EEEEEEEEec--CCCCcceeEEEeCCceEEEEECCCCeEEEEEEcCCcc
Confidence 99999999999999999883 223333332 2222222111 1111112233455556777788777766654322111
Q ss_pred CCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHH
Q 006025 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (664)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da 390 (664)
..........+++.+.+..+.... +..........+.+. .....+|.+|||+|+|||||.++|++|||||+||+||
T Consensus 224 ~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~-~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA 299 (493)
T PRK08244 224 QVPKDEPVTLEELKTSLIRICGTD---FGLNDPVWMSRFGNA-TRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDA 299 (493)
T ss_pred cccCCCCCCHHHHHHHHHHhhCCC---CCcCCeeEEEecccc-eeeHhhhccCcEEEeecceeccCCccccccccchhhH
Confidence 111111223455555554432210 000011111111111 1234588999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHH
Q 006025 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (664)
Q Consensus 391 ~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~ 437 (664)
.+|+|+|+.++++. ....+|+.|+++|++++..++..+..
T Consensus 300 ~~La~~La~~l~g~-------~~~~lL~~Ye~eR~~~~~~~~~~~~~ 339 (493)
T PRK08244 300 MNLGWKLAAAIKGW-------APDWLLDSYHAERHPVGTALLRNTEV 339 (493)
T ss_pred HHHHHHHHHHHcCC-------CCchhhhhhHHHHHHHHHHHHHHhHH
Confidence 99999999987542 22578999999999999987766543
No 33
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=1.3e-36 Score=326.44 Aligned_cols=361 Identities=20% Similarity=0.210 Sum_probs=225.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
||+||||||+|+++|+.|+++| ++|+|+||.+.+....+....++.++++++++|+.+ |+++++...+.... .+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~-~~~- 76 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKL--GLWPKLAPFATPIL-DIH- 76 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHC--CChhhhHhhcCccc-eEE-
Confidence 7999999999999999999999 999999998655432221123578999999999999 78888765543221 221
Q ss_pred cccC-CCCceeeeccCCCcccccC-CCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEEEEEcCCcEEe
Q 006025 158 LVDG-ISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (664)
Q Consensus 158 ~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ 232 (664)
+.+. ..+. ..+.. .+.+ .+.++.++|..|++.|.+.+. ...++++++|++++.++++++|++++|++++
T Consensus 77 ~~~~~~~~~--~~~~~----~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ 150 (382)
T TIGR01984 77 VSDQGHFGA--THLRA----SEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLR 150 (382)
T ss_pred EEcCCCCce--EEech----hhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEE
Confidence 1111 1111 11111 1111 123578999999999998864 3457889999999988889999999999999
Q ss_pred ccEEEEecCCchhhhhhhcCC-CCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCC-eEEEEEEeeCCC
Q 006025 233 GDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAG-KMQWYAFHKEPA 310 (664)
Q Consensus 233 adlvVgADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 310 (664)
||+||+|||.+|.+|+.+... ....|.+ .++........ +.....+..+...+ .+..+|..++ .+.+++......
T Consensus 151 ad~vV~AdG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~~~~~~~~ 227 (382)
T TIGR01984 151 AKLLIAADGANSKVRELLSIPTEEHDYNQ-TALIANIRHEQ-PHQGCAFERFTPHG-PLALLPLKDNYRSSLVWCLPSKQ 227 (382)
T ss_pred eeEEEEecCCChHHHHHcCCCCcccccCC-EEEEEEEEecC-CCCCEEEEeeCCCC-CeEECcCCCCCCEEEEEECCHHH
Confidence 999999999999999998432 2333333 34443332211 11122223333333 4555666666 444443321110
Q ss_pred CCCCCCcchHHHHHHHH-hCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHH
Q 006025 311 GGVDGPEGKKERLLKIF-EGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 389 (664)
Q Consensus 311 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~D 389 (664)
... ......+.+.+.+ ..|.+.+.+ +... .....+++.. ....+|..+||+|+|||||.++|++|||+|+||+|
T Consensus 228 ~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~-~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~D 302 (382)
T TIGR01984 228 ADT-IANLPDAEFLAELQQAFGWRLGK-ITQV--GERKTYPLKL-RIAETHVHPRVVLIGNAAQTLHPIAGQGFNLGLRD 302 (382)
T ss_pred HHH-HHcCCHHHHHHHHHHHHhhhccC-eEEc--CCccEeecch-hhhhheecCCEEEEeecccccCCccccchhhhHHH
Confidence 000 0000111121111 111111111 0011 1122233332 23557899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccCCCc
Q 006025 390 GYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGR 469 (664)
Q Consensus 390 a~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ 469 (664)
|..|+++|..... +.....+|+.|+++|++++..++.++..+. .+|.........+|+..+....+
T Consensus 303 a~~La~~L~~~~~-------~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~ 368 (382)
T TIGR01984 303 VETLAEVLIDARI-------DLGTYALLQEYLRRRQFDQFITIGLTDGLN-------RLFSNHIPLLRALRNLGLLALEN 368 (382)
T ss_pred HHHHHHHHHHhcc-------CccCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCchHHHHHHHHHHHHHhc
Confidence 9999999987641 123368999999999999998877765432 23333444456677776665554
Q ss_pred cc
Q 006025 470 VG 471 (664)
Q Consensus 470 ~~ 471 (664)
++
T Consensus 369 ~p 370 (382)
T TIGR01984 369 FP 370 (382)
T ss_pred CH
Confidence 43
No 34
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=1.5e-36 Score=322.40 Aligned_cols=340 Identities=27% Similarity=0.285 Sum_probs=203.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
+||+||||||+|+++|+.|+++|++|+||||++.+.... .++.+.++++++|+.+ |+++++...+.........
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~----~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~~~~~~~ 75 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKG----RGIGLSPNSLRILQRL--GLLDEILARGSPHEVMRIF 75 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSS----SSEEEEHHHHHHHHHT--TEHHHHHHHSEEECEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhcccccccc----cccccccccccccccc--cchhhhhhhcccccceeeE
Confidence 699999999999999999999999999999987653322 2688999999999999 7888887765322211110
Q ss_pred cccCCCCc--eeee-ccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcC---C-
Q 006025 158 LVDGISGS--WYIK-FDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLEN---G- 228 (664)
Q Consensus 158 ~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~---g- 228 (664)
+.....+. +... ............+..+.+.|..|++.|.+.+. ...+++++++++++.+++++++.+.+ |
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~ 155 (356)
T PF01494_consen 76 FYDGISDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGE 155 (356)
T ss_dssp EEEETTTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCE
T ss_pred eecccCCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCc
Confidence 11110000 0000 00000001123345678999999999998752 24588999999999999988766644 3
Q ss_pred -cEEeccEEEEecCCchhhhhhhcCCCC-ccccceEEEEEEeccCC-CCccccceEEEecCeeEEEEeeCCC-CeEEEEE
Q 006025 229 -QCYAGDLLIGADGIWSKVRKNLFGPQE-AIYSGYTCYTGIADFVP-ADIESVGYRVFLGHKQYFVSSDVGA-GKMQWYA 304 (664)
Q Consensus 229 -~~i~adlvVgADG~~S~vR~~l~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 304 (664)
++++||+||||||++|.||+.+..... ..+.....+..+..... .+.....+.....+...+..+|..+ ....+++
T Consensus 156 ~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 235 (356)
T PF01494_consen 156 EETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDSDLSDPWEDHCFIYSPPSGGFAIIPLENGDRSRFVW 235 (356)
T ss_dssp EEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEECHSHTTTSCEEEEEEETTEEEEEEEETTTTEEEEEE
T ss_pred eeEEEEeeeecccCcccchhhhccccccCccccccccccccccccccccccccccccccccccceeEeeccCCccceEEE
Confidence 379999999999999999999843311 11111112222211111 1111112223333444444555555 3333333
Q ss_pred EeeCCCC-CCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccch
Q 006025 305 FHKEPAG-GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGG 383 (664)
Q Consensus 305 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~ 383 (664)
....... .........+.+.+.+... ............+..+.+.. ....+|..|||+|||||||.|+|++|||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~grv~LiGDAAh~~~P~~GqG~ 311 (356)
T PF01494_consen 236 FLPFDESKEERPEEFSPEELFANLPEI---FGPDLLETEIDEISAWPIPQ-RVADRWVKGRVLLIGDAAHAMDPFSGQGI 311 (356)
T ss_dssp EEETTTTTCCSTHCHHHHHHHHHHHHH---HHTCHHHHEEEEEEEEEEEE-EEESSSEETTEEE-GGGTEEE-CCTSHHH
T ss_pred eeecccccccccccccccccccccccc---cccccccccccccccccccc-ccccccccceeEEeccceeeecccccCCC
Confidence 3332221 1111222233333333221 11000011111222222222 23457889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHh
Q 006025 384 CMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGL 434 (664)
Q Consensus 384 n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~ 434 (664)
|+||+||..|+++|....++. ...++|+.|+++|++++..++++
T Consensus 312 n~Ai~da~~La~~L~~~~~g~-------~~~~~l~~Y~~~r~~~~~~~~~~ 355 (356)
T PF01494_consen 312 NMAIEDAAALAELLAAALKGE-------ASEEALKAYEQERRPRARKAVQF 355 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-------SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999887532 34688999999999999987654
No 35
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=5e-35 Score=320.02 Aligned_cols=331 Identities=15% Similarity=0.166 Sum_probs=208.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
..+||+||||||+||++|+.|+++|++|+|+||.+.+.. . ..+..++++++++|+.+ |+++++...+..... .
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~-~---gra~~l~~~tle~L~~l--Gl~~~l~~~~~~~~~-~ 76 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLE-V---GRADALNARTLQLLELV--DLFDELYPLGKPCNT-S 76 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccc-c---ccceEeCHHHHHHHHhc--ChHHHHHhhCcccee-E
Confidence 457999999999999999999999999999999865432 2 23577999999999999 788888765432211 1
Q ss_pred cccccCCCCceeeeccC-CCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCCcEEe
Q 006025 156 NGLVDGISGSWYIKFDT-FTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ 232 (664)
. .+.. +........ ........++..+.+.+..+++.|.+++. ...++++++|++++.+++++.+++.+|++++
T Consensus 77 ~-~~~~--g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~ 153 (487)
T PRK07190 77 S-VWAN--GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQ 153 (487)
T ss_pred E-EecC--CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEE
Confidence 1 1111 111110000 00001112233467889999999987653 2358889999999999999988888888999
Q ss_pred ccEEEEecCCchhhhhhhc-CCCCccccceEEEE-EEeccCCCCccc-cceEEEecCeeEEEEeeCCCCeEEEEEEeeCC
Q 006025 233 GDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYT-GIADFVPADIES-VGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 309 (664)
Q Consensus 233 adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (664)
|++||+|||.+|.||+.+. +.....+....... .... .+.+. .....+......++..+..++...++... .
T Consensus 154 a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~g~~~~~p~~~~~~r~~~~~--~ 228 (487)
T PRK07190 154 SRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVID---TDFPKVPEIIVFQAETSDVAWIPREGEIDRFYVRM--D 228 (487)
T ss_pred eCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEc---cCCCCCcceEEEEcCCCCEEEEECCCCEEEEEEEc--C
Confidence 9999999999999999983 33333332211111 1111 11111 11112223333344455555544443321 1
Q ss_pred CCCCCCCcchHHHHHHHHhC-CChhHHHHHHcCCccceeeeecccCCCCcccc-CCcEEEEccCcCcCCCCCccchhHHH
Q 006025 310 AGGVDGPEGKKERLLKIFEG-WCDNVVDLILATDEEAILRRDIYDRTPIFTWG-RGRVTLLGDSVHAMQPNLGQGGCMAI 387 (664)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~rv~LvGDAAh~~~P~~GqG~n~al 387 (664)
. .....+++.+.+.. ..+.. +.-........+.+. .....+|. .|||+|+|||||.++|++|||||+||
T Consensus 229 ~-----~~~t~~~~~~~l~~~~~~~~---~~~~~~~w~s~~~~~-~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~gi 299 (487)
T PRK07190 229 T-----KDFTLEQAIAKINHAMQPHR---LGFKEIVWFSQFSVK-ESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGL 299 (487)
T ss_pred C-----CCCCHHHHHHHHHHhcCCCC---CceEEEEEEEEeeeC-cEehhhcCcCCcEEEEecccccCCCccccchhhhH
Confidence 1 11122333332221 11100 000001111122222 22345776 79999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHH
Q 006025 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (664)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~ 437 (664)
+||.+|+|+|+.++++. ....+|++|+++|++.+..++..++.
T Consensus 300 qDA~nL~wkLa~v~~g~-------a~~~lLdtY~~eR~p~a~~vl~~t~~ 342 (487)
T PRK07190 300 ADAFNLIWKLNMVIHHG-------ASPELLQSYEAERKPVAQGVIETSGE 342 (487)
T ss_pred HHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887653 23689999999999999988776654
No 36
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=4.3e-36 Score=323.07 Aligned_cols=375 Identities=18% Similarity=0.189 Sum_probs=236.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccC-CCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~-~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
.+||+||||||+|+++|+.|++.|++|+|+||.+.+... .+.....+.++++++++|+.+ |+++++..........+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~--g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERL--GVWQALDAARLAPVYDM 82 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHc--CchhhhhhhcCCcceEE
Confidence 579999999999999999999999999999998654321 111223477999999999998 78887754332222222
Q ss_pred cccccCCCCceeeeccCCCcccccCCC-eEEeeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEeeCCeEEEEEcCCcEE
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCY 231 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~~g~~i 231 (664)
. +.....+ .+.+.. ...+.+ ..+.++|..|++.|.+.+.. ..++ +++|++++.+++++.|++.+|+++
T Consensus 83 ~-~~~~~~~--~~~~~~----~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~~g~~~ 154 (388)
T PRK07608 83 R-VFGDAHA--RLHFSA----YQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLADGQVL 154 (388)
T ss_pred E-EEECCCc--eeEeec----cccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEECCCCEE
Confidence 2 1111111 122211 111222 35678999999999887632 3455 899999998888999999999899
Q ss_pred eccEEEEecCCchhhhhhhcCC-CCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCCC
Q 006025 232 AGDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPA 310 (664)
Q Consensus 232 ~adlvVgADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (664)
+||+||+|||.+|.+|+.+... ....|.+ .++...... +..... ....|+.++..++.+|..++.+.+++......
T Consensus 155 ~a~~vI~adG~~S~vr~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 231 (388)
T PRK07608 155 RADLVVGADGAHSWVRSQAGIKAERRPYRQ-TGVVANFKA-ERPHRG-TAYQWFRDDGILALLPLPDGHVSMVWSARTAH 231 (388)
T ss_pred EeeEEEEeCCCCchHHHhcCCCccccccCC-EEEEEEEEe-cCCCCC-EEEEEecCCCCEEEeECCCCCeEEEEECCHHH
Confidence 9999999999999999988432 2333433 222222221 111111 12344456566666787777665543321110
Q ss_pred CCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHH
Q 006025 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (664)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da 390 (664)
. ........+.+.+.+..+.......+..... ...+++.. .....|..+|++|+|||||.++|++|||+|+||+||
T Consensus 232 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~rv~liGDAAh~~~P~~GqG~n~ai~da 307 (388)
T PRK07608 232 A-DELLALSPEALAARVERASGGRLGRLECVTP--AAGFPLRL-QRVDRLVAPRVALVGDAAHLIHPLAGQGMNLGLRDV 307 (388)
T ss_pred H-HHHHCCCHHHHHHHHHHHHHHhcCCceecCC--cceeecch-hhhhhhhcCceEEEeccccccCCccccccchhHHHH
Confidence 0 0000011233333333222111010110100 01122211 234578999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccCCCcc
Q 006025 391 YQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRV 470 (664)
Q Consensus 391 ~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~ 470 (664)
.+|+++|......+ +....++|+.|+++|++++..++..++. +..+|..+..+...+|+..+..+..+
T Consensus 308 ~~La~~L~~~~~~~-----~~~~~~~l~~Ye~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~r~~~~~~~~~~ 375 (388)
T PRK07608 308 AALADVLAGREPFR-----DLGDLRLLRRYERARREDILALQVATDG-------LQRLFALPGPLARWLRNAGMALVGAL 375 (388)
T ss_pred HHHHHHHHHhhccC-----CCccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCchHHHHHHHHHHHHHhhC
Confidence 99999998753211 1123479999999999999988766653 33455566667778898888777665
Q ss_pred c--ceeeeehhh
Q 006025 471 G--GRFFIDLAM 480 (664)
Q Consensus 471 ~--~~~l~~~~~ 480 (664)
+ +++++++++
T Consensus 376 ~~~~~~~~~~~~ 387 (388)
T PRK07608 376 PLVKRWLVRHAL 387 (388)
T ss_pred hHHHHHHHHHhc
Confidence 5 366666654
No 37
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=5.8e-36 Score=321.80 Aligned_cols=362 Identities=22% Similarity=0.250 Sum_probs=228.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccC-CCCcccceeeCchHHHHHHhcChhHHHHHHH-hccccCcccc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG-EGQYRGPIQIQSNALAALEAIDLDVAEEVMR-AGCVTGDRIN 156 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~-~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~-~~~~~~~~~~ 156 (664)
||+||||||+|+++|+.|+++|++|+|+||.+.+... .+....++.++++++++|+.+ |+++++.. .+. ....+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--Gl~~~~~~~~~~-~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKL--GVWDKIEPDRAQ-PIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHC--CchhhhhhhcCC-CceEEE
Confidence 7999999999999999999999999999998764322 111223578999999999999 78888876 332 222222
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEeeCCeEEEEEcCCcEEec
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a 233 (664)
+++.. +.....+... .......++.++|..|++.|.+.+.. ..++++++|++++.+++++.+++++|+++++
T Consensus 78 -~~~~~-~~~~~~~~~~---~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~ 152 (385)
T TIGR01988 78 -VSDGG-SFGALHFDAD---EIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRA 152 (385)
T ss_pred -EEeCC-CCceEEechh---hcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEe
Confidence 22221 1111222210 00112346789999999999987632 4688899999999888899999999999999
Q ss_pred cEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCCCCC
Q 006025 234 DLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG 312 (664)
Q Consensus 234 dlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (664)
|+||+|||.+|.+|+.+. ......|.. .++........ ......+..+ ..+..++.+|..++...|.+........
T Consensus 153 ~~vi~adG~~S~vr~~l~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~~g~~~~~p~~~~~~~~~~~~~~~~~~ 229 (385)
T TIGR01988 153 RLLVGADGANSKVRQLAGIPTTGWDYGQ-SAVVANVKHER-PHQGTAWERF-TPTGPLALLPLPDNRSSLVWTLPPEEAE 229 (385)
T ss_pred eEEEEeCCCCCHHHHHcCCCccccccCC-eEEEEEEEecC-CCCCEEEEEe-cCCCCEEEeECCCCCeEEEEECCHHHHH
Confidence 999999999999999984 333334433 23332222111 1111222223 3334455667777765555443211000
Q ss_pred ---CCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHH
Q 006025 313 ---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 389 (664)
Q Consensus 313 ---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~D 389 (664)
........+.+.+.+..+... +.. ......+++.. .....|..+||+|+|||||.++|++|||+|+||+|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~-~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~Ai~d 302 (385)
T TIGR01988 230 RLLALSDEEFLAELQRAFGSRLGA----ITL--VGERHAFPLSL-THAKRYVAPRLALIGDAAHTIHPLAGQGLNLGLRD 302 (385)
T ss_pred HHHcCCHHHHHHHHHHHHhhhcCc----eEe--ccCcceeechh-hhhhheecCceEEEecccccCCccccchhhhhHHH
Confidence 000111112222222222110 000 01111222222 23457899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccCCCc
Q 006025 390 GYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGR 469 (664)
Q Consensus 390 a~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~ 469 (664)
|..|++.|...++.+ .+.....+|+.|+++|++++..++.+++... .++.........+|++.+.....
T Consensus 303 a~~La~~L~~~~~~~----~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~r~~~~~~~~~ 371 (385)
T TIGR01988 303 VAALAEVLEDARRRG----EDIGSPRVLQRYERRRRFDNAAMLGATDGLN-------RLFSNDFPPLRLLRNLGLRLLNL 371 (385)
T ss_pred HHHHHHHHHHHHhcC----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcCCCcHHHHHHHHHHHHHhh
Confidence 999999999876432 1122468999999999999998887776533 23333344455666666555443
No 38
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=327.84 Aligned_cols=340 Identities=19% Similarity=0.231 Sum_probs=208.6
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
...+||+||||||+||++|+.|+++|++|+||||.+..... ..++.++++++++|+.+ |+++++.+.+......
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~----~ra~~l~~r~~e~L~~l--Gl~~~l~~~g~~~~~~ 78 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFN----PKANTTSARSMEHFRRL--GIADEVRSAGLPVDYP 78 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCC----CccccCCHHHHHHHHhc--ChHHHHHhhcCCcccc
Confidence 44689999999999999999999999999999997643222 23577999999999999 8899988765422110
Q ss_pred cc-ccccCCCCceeeeccCCCcccc-----------cCCCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCC
Q 006025 155 IN-GLVDGISGSWYIKFDTFTPAAE-----------KGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGD 219 (664)
Q Consensus 155 ~~-~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~ 219 (664)
.. .+.....+.....++....... ......+.+.|..|++.|.+.+. ...++++++|++++.+++
T Consensus 79 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~ 158 (545)
T PRK06126 79 TDIAYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD 158 (545)
T ss_pred CCceEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCC
Confidence 00 0111111222222211100000 01112467899999999988752 346899999999999888
Q ss_pred eEEEEEcC---Cc--EEeccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEecc--CCCCc-cccc-eEEEecCeeE
Q 006025 220 KVSVVLEN---GQ--CYAGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADF--VPADI-ESVG-YRVFLGHKQY 289 (664)
Q Consensus 220 ~v~v~~~~---g~--~i~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~-~~~~~~~~~~ 289 (664)
++++++.+ |+ ++++|+||+|||++|.||+.+. ......+.+.. +...... ..... .... ..++.+++..
T Consensus 159 ~v~v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~ 237 (545)
T PRK06126 159 GVTATVEDLDGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRD-LSIYIRAPGLAALVGHDPAWMYWLFNPDRR 237 (545)
T ss_pred eEEEEEEECCCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceE-EEEEEEcCchHHHhcCCCceEEEEECCCcc
Confidence 88877643 53 7899999999999999999983 22222322221 1111111 00111 1112 2333444444
Q ss_pred EEEeeCCCCeEEEEEEeeCCCCCCCCCcchHHHHHHHHhCCCh-hHHHHHHcCCccceeeeecccCCCCccccCCcEEEE
Q 006025 290 FVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCD-NVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLL 368 (664)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~Lv 368 (664)
.+..+..... .|.+....+.... .....+.+.+.+..... .+. ........|. .......+|..|||+|+
T Consensus 238 ~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~w~-~~~~~a~~~~~gRv~L~ 308 (545)
T PRK06126 238 GVLVAIDGRD-EWLFHQLRGGEDE--FTIDDVDARAFVRRGVGEDID-----YEVLSVVPWT-GRRLVADSYRRGRVFLA 308 (545)
T ss_pred EEEEEECCCC-eEEEEEecCCCCC--CCCCHHHHHHHHHHhcCCCCC-----eEEEeecccc-hhheehhhhccCCEEEe
Confidence 3333443332 3433311111111 11112222222221111 000 0000011122 22334568999999999
Q ss_pred ccCcCcCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHH
Q 006025 369 GDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (664)
Q Consensus 369 GDAAh~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~ 437 (664)
|||||.|+|++|||+|+||+||.+|+|+|+.++++. ..+.+|+.|+++|++++..++..+..
T Consensus 309 GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~-------~~~~lL~~Y~~eR~p~~~~~~~~s~~ 370 (545)
T PRK06126 309 GDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGW-------AGPALLDSYEAERRPIAARNTDYARR 370 (545)
T ss_pred chhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCC-------CcHHHHhhhHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999876531 23689999999999999998887753
No 39
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=1e-35 Score=321.04 Aligned_cols=376 Identities=18% Similarity=0.233 Sum_probs=234.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHc---CCeEEEEccCCcc-ccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRK---GFEVLVFEKDMSA-IRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 151 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~---g~~~~~~~~~~~~-~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~ 151 (664)
+.+||+||||||+|+++|+.|+++ |++|+|+||..+. ....+....++.+.++++++|+++ |+++++...+...
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l--gl~~~~~~~~~~~ 79 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARL--GVWQALADCATPI 79 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHC--CChhhhHhhcCCc
Confidence 568999999999999999999998 9999999996322 111111123578999999999999 7888887654322
Q ss_pred CccccccccCCCCceeeeccCCCcccccCCC-eEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEEEEEcC
Q 006025 152 GDRINGLVDGISGSWYIKFDTFTPAAEKGLP-VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLEN 227 (664)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~~ 227 (664)
. .+. +.+... .....+.. ...+.+ .++.++|..|.+.|.+.+. ...++++++|++++.+++++.|++++
T Consensus 80 ~-~~~-~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~ 152 (395)
T PRK05732 80 T-HIH-VSDRGH-AGFVRLDA----EDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDD 152 (395)
T ss_pred c-EEE-EecCCC-CceEEeeh----hhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECC
Confidence 1 111 111110 00111110 112222 3467899999999888653 24578899999999888899999999
Q ss_pred CcEEeccEEEEecCCchhhhhhhcCCC-CccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEe
Q 006025 228 GQCYAGDLLIGADGIWSKVRKNLFGPQ-EAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFH 306 (664)
Q Consensus 228 g~~i~adlvVgADG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (664)
|+++++|+||+|||.+|.+|+.+.... ...+. ..++........ ......+..+...+ .+..+|.+++...+++..
T Consensus 153 g~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~g-~~~~~p~~~g~~~~~~~~ 229 (395)
T PRK05732 153 GETLTGRLLVAADGSHSALREALGIDWQQHPYE-QVAVIANVTTSE-AHQGRAFERFTEHG-PLALLPMSDGRCSLVWCH 229 (395)
T ss_pred CCEEEeCEEEEecCCChhhHHhhCCCccceecC-CEEEEEEEEecC-CCCCEEEEeecCCC-CEEEeECCCCCeEEEEEC
Confidence 989999999999999999999884322 22332 233433322211 11112222233333 345567777766555443
Q ss_pred eCCCCC---CCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccch
Q 006025 307 KEPAGG---VDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGG 383 (664)
Q Consensus 307 ~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~ 383 (664)
...... ........+.+.+.+ .|. ... +... .....+++.. ....+|..+|++|+|||||.++|++|||+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~-~~~~--~~~~~~~l~~-~~~~~~~~grv~LvGDAAh~~~P~~GqG~ 302 (395)
T PRK05732 230 PLEDAEEVLSWSDAQFLAELQQAF-GWR--LGR-ITHA--GKRSAYPLAL-VTAAQQISHRLALVGNAAQTLHPIAGQGF 302 (395)
T ss_pred CHHHHHHHHcCCHHHHHHHHHHHH-Hhh--hcc-eeec--CCcceecccc-cchhhhccCcEEEEeecccccCCcccccc
Confidence 211000 000011112222222 110 000 0000 0111122222 23457889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeec
Q 006025 384 CMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFR 463 (664)
Q Consensus 384 n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 463 (664)
|+||+||.+|+++|..+++.. .+.....+|+.|+++|++++..++.+++. +..+|..+..+...+|+..
T Consensus 303 ~~al~Da~~La~~L~~~~~~~----~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~r~~~ 371 (395)
T PRK05732 303 NLGLRDVMSLAETLTQALARG----EDIGDYAVLQRYQQRRQQDREATIGFTDG-------LVRLFANRWAPLVVGRNLG 371 (395)
T ss_pred chHHHHHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHcCCChHHHHHHHHH
Confidence 999999999999998876432 11223588999999999999877766654 3344555556677888888
Q ss_pred ccCCCccc--ceeeeehhhh
Q 006025 464 IPHPGRVG--GRFFIDLAMP 481 (664)
Q Consensus 464 l~~~~~~~--~~~l~~~~~g 481 (664)
+..+..++ ++++++++++
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~ 391 (395)
T PRK05732 372 LMAMDLLPPARDWLARRTLG 391 (395)
T ss_pred HHHHccCHHHHHHHHHHHhc
Confidence 87777655 4666666654
No 40
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=1.5e-34 Score=309.70 Aligned_cols=338 Identities=16% Similarity=0.207 Sum_probs=205.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
.+||+||||||+|+++|+.|+++|++|+|+||.+..... +.. +...+.++++++|+.+ |+++++...+... ..+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~-~~~-~a~~l~~~~~~~L~~l--Gl~~~l~~~~~~~-~~~~ 76 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVL-GRI-RAGVLEQGTVDLLREA--GVDERMDREGLVH-EGTE 76 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccC-Cce-eEeeECHHHHHHHHHC--CChHHHHhcCcee-cceE
Confidence 469999999999999999999999999999998642111 111 1234899999999999 7889987755322 2222
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEe-eCCeEEEEEc-CCc--E
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKD-HGDKVSVVLE-NGQ--C 230 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~-~~~~v~v~~~-~g~--~ 230 (664)
+.++. ......++.. ..+.+ .....+..|.+.|.+++. ...++++.+++.+.. +++.+.|++. +|+ +
T Consensus 77 -~~~~~-~~~~~~~~~~----~~~~~-~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~ 149 (390)
T TIGR02360 77 -IAFDG-QRFRIDLKAL----TGGKT-VMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHR 149 (390)
T ss_pred -EeeCC-EEEEEecccc----CCCce-EEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEE
Confidence 12211 1112222211 11111 123457788888877642 234677888877754 5566777785 775 7
Q ss_pred EeccEEEEecCCchhhhhhhcCCCCccccce--EEEEEEeccCCCCccccceEEEecCeeEEEEeeCCC-CeEEEEEEee
Q 006025 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGA-GKMQWYAFHK 307 (664)
Q Consensus 231 i~adlvVgADG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 307 (664)
++||+||||||++|.||+++.......|.++ ..|.++....+.. ... ..+.+.+..+...+..+ ....|++...
T Consensus 150 i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (390)
T TIGR02360 150 LDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGILSETPPV--SHE-LIYSNHERGFALCSMRSATRSRYYVQVP 226 (390)
T ss_pred EEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEecCCCCC--CCc-eEEEeCCCceEEEeccCCCcceEEEEcC
Confidence 9999999999999999999844433334432 2344443222211 111 12333333333334432 2223444332
Q ss_pred CCCCCCC-CCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHH
Q 006025 308 EPAGGVD-GPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMA 386 (664)
Q Consensus 308 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~a 386 (664)
....... ......+.+.+.+ .+.+.+.+...........++ ......+|..|||+|+|||||.|+|+.|||+|+|
T Consensus 227 ~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~a 302 (390)
T TIGR02360 227 LTDKVEDWSDDRFWAELKRRL---PSEAAERLVTGPSIEKSIAPL-RSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNLA 302 (390)
T ss_pred CCCChhhCChhHHHHHHHHhc---CchhhhhhccCCccceeeeeH-HhhccccCccCCEEEEEccccCCCCCcCCchhHH
Confidence 2111000 0111122232222 233333332221111111111 1123457889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHH
Q 006025 387 IEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVM 441 (664)
Q Consensus 387 l~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~ 441 (664)
|+||.+|+++|..... .+...+|+.|++.|++++..+++.++.+..+
T Consensus 303 ieDA~~La~~L~~~~~--------~~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~ 349 (390)
T TIGR02360 303 ASDVHYLYEALLEHYQ--------EGSSAGIEGYSARALARVWKAERFSWWMTSL 349 (390)
T ss_pred HHHHHHHHHHHHHHhc--------cChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987532 2346899999999999999999888765444
No 41
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=9e-35 Score=312.43 Aligned_cols=338 Identities=17% Similarity=0.159 Sum_probs=205.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
.+||+||||||+|+++|+.|+++|++|+|+||.+.+... +.. ++..+.++++++|+++ |+++++...+.... .+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~~-~a~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~-~~~ 76 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVE-GRI-RAGVLEQGTVDLLREA--GVGERMDREGLVHD-GIE 76 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccc-ccc-ceeEECHhHHHHHHHc--CChHHHHhcCCccC-cEE
Confidence 469999999999999999999999999999998643111 111 1345899999999999 78899877654322 222
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEe-eCCeEEEEE-cCCc--E
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKD-HGDKVSVVL-ENGQ--C 230 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~-~~~~v~v~~-~~g~--~ 230 (664)
+.+. +. ...++.. ...+.+....+.|..|.+.|++.+. ...+++++++++++. +++.+.|++ .+|+ +
T Consensus 77 -~~~~--g~-~~~~~~~---~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~ 149 (392)
T PRK08243 77 -LRFD--GR-RHRIDLT---ELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHR 149 (392)
T ss_pred -EEEC--CE-EEEeccc---cccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEE
Confidence 1221 11 1222211 0111222345678888887776532 235888999999987 667777887 4664 6
Q ss_pred EeccEEEEecCCchhhhhhhcCCCCccccce--EEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeC
Q 006025 231 YAGDLLIGADGIWSKVRKNLFGPQEAIYSGY--TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKE 308 (664)
Q Consensus 231 i~adlvVgADG~~S~vR~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (664)
++||+||||||++|.||+++.......|... ..|.++....+.. .....+......+.+.++.+.+...+++....
T Consensus 150 i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (392)
T PRK08243 150 LDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAPPV--SDELIYANHERGFALCSMRSPTRSRYYLQCPL 227 (392)
T ss_pred EEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCCCC--CCceEEeeCCCceEEEecCCCCcEEEEEEecC
Confidence 8999999999999999999843322333322 2344332221211 11111222233344444433443333333321
Q ss_pred CCCCC-CCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHH
Q 006025 309 PAGGV-DGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (664)
Q Consensus 309 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al 387 (664)
..... .......+.+.+.+..+.. ..+..........+++ ......+|..|||+|+|||||.++|++|||+|+||
T Consensus 228 ~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai 303 (392)
T PRK08243 228 DDKVEDWSDERFWDELRRRLPPEDA---ERLVTGPSIEKSIAPL-RSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAA 303 (392)
T ss_pred CCCcccCChhHHHHHHHHhcCcccc---cccccCccccccceee-eeceeccceeCCEEEEecccccCCCCcCcchhHHH
Confidence 11111 1111222333333332210 0000000000000011 11233578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHH
Q 006025 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAV 440 (664)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~ 440 (664)
+||.+|+++|.+.++. +..++|+.|+++|++++..++.++..+..
T Consensus 304 ~Da~~La~~L~~~~~~--------~~~~~L~~Ye~~r~~r~~~~~~~~~~~~~ 348 (392)
T PRK08243 304 SDVRYLARALVEFYRE--------GDTALLDAYSATALRRVWKAERFSWWMTS 348 (392)
T ss_pred HHHHHHHHHHHHHhcc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987543 13689999999999999998888765443
No 42
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=1.6e-34 Score=323.23 Aligned_cols=334 Identities=18% Similarity=0.195 Sum_probs=210.2
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
...+||+||||||+||++|+.|+++|++|+||||.+.... ...++.++++++++|+.+ |+++++.+.+......
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~----~~ra~~l~~~~~~~l~~l--Gl~~~l~~~~~~~~~~ 94 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST----GSRAICFAKRSLEIFDRL--GCGERMVDKGVSWNVG 94 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCC----CCeEEEEcHHHHHHHHHc--CCcHHHHhhCceeece
Confidence 3568999999999999999999999999999999864321 123578999999999999 7888887665422111
Q ss_pred ccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEEEEEc--CCc
Q 006025 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLE--NGQ 229 (664)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~--~g~ 229 (664)
.. +... .....++... ......+....+.|..|++.|.+.+. ...++++++|++++.+++++++++. +|+
T Consensus 95 ~~-~~~~---~~~~~~~~~~-~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~ 169 (547)
T PRK08132 95 KV-FLRD---EEVYRFDLLP-EPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGP 169 (547)
T ss_pred eE-EeCC---CeEEEecCCC-CCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCc
Confidence 11 1111 1122222111 11122333456899999999988753 3468899999999998888887764 443
Q ss_pred -EEeccEEEEecCCchhhhhhhcC-CCCccccceEEEEEEeccCCCCccccceEEEe---cCeeEEEEeeCCCCeEEEEE
Q 006025 230 -CYAGDLLIGADGIWSKVRKNLFG-PQEAIYSGYTCYTGIADFVPADIESVGYRVFL---GHKQYFVSSDVGAGKMQWYA 304 (664)
Q Consensus 230 -~i~adlvVgADG~~S~vR~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 304 (664)
+++||+||+|||.+|.||+.++. .....|.....+... .. ..+.....+..+. .++..++..+...+.+.+..
T Consensus 170 ~~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (547)
T PRK08132 170 YTLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADV-KM-KADFPTERWFWFDPPFHPGQSVLLHRQPDNVWRIDF 247 (547)
T ss_pred EEEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEE-Ee-cCCCCCeeeEEEeccCCCCcEEEEEeCCCCeEEEEE
Confidence 79999999999999999998842 333344332222111 11 1112111122221 23334444454444333322
Q ss_pred EeeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecc--cCCCCccccCCcEEEEccCcCcCCCCCccc
Q 006025 305 FHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIY--DRTPIFTWGRGRVTLLGDSVHAMQPNLGQG 382 (664)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG 382 (664)
...... .. ......+.+.+. +.+.+....+..+.....+ ......+|..|||+|+|||||.++|++|||
T Consensus 248 ~~~~~~-~~-~~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG 318 (547)
T PRK08132 248 QLGWDA-DP-EAEKKPENVIPR-------VRALLGEDVPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARG 318 (547)
T ss_pred ecCCCC-Cc-hhhcCHHHHHHH-------HHHHcCCCCCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCccccc
Confidence 211111 00 001112222222 2222221111112221222 233456899999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHH
Q 006025 383 GCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (664)
Q Consensus 383 ~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~ 437 (664)
||+||+||.+|+|+|+.++++. ...++|++|+++|+++++.++..+..
T Consensus 319 ~n~gi~DA~~LawkLa~vl~g~-------~~~~lL~~Ye~eR~p~~~~~~~~s~~ 366 (547)
T PRK08132 319 ANSGIQDADNLAWKLALVLRGR-------APDSLLDSYASEREFAADENIRNSTR 366 (547)
T ss_pred ccchHHHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987642 24689999999999999988776654
No 43
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=3.7e-34 Score=314.08 Aligned_cols=341 Identities=15% Similarity=0.158 Sum_probs=213.3
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~ 153 (664)
....+||+|||||++|+++|+.|+++|++|+|+||....... ..++.++|++.++|+++ |+++.+.........
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~----~~g~~L~p~g~~~L~~L--Gl~d~l~~~~~~~~~ 113 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPER----MMGEFMQPGGRFMLSKL--GLEDCLEGIDAQKAT 113 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCcc----ccccccCchHHHHHHHc--CCcchhhhccCcccc
Confidence 345689999999999999999999999999999997532211 12467999999999999 788877654322222
Q ss_pred cccccccCCCCceeeeccCCCcccccC-CCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCe---EEEEEc
Q 006025 154 RINGLVDGISGSWYIKFDTFTPAAEKG-LPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK---VSVVLE 226 (664)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~---v~v~~~ 226 (664)
.+..+.++. .....++... .... .+.++.++|..|.+.|.+++. +..++. .+++++..+++. |++...
T Consensus 114 ~~~v~~~g~--~~~~~~~~~~--~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~-gtvv~li~~~~~v~gV~~~~~ 188 (514)
T PLN02985 114 GMAVYKDGK--EAVAPFPVDN--NNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEE-GTVKSLIEEKGVIKGVTYKNS 188 (514)
T ss_pred cEEEEECCE--EEEEeCCCCC--cCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEe-eeEEEEEEcCCEEEEEEEEcC
Confidence 222111111 1123333111 1111 234578999999999998763 334554 467777655553 334445
Q ss_pred CCc--EEeccEEEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEE
Q 006025 227 NGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYA 304 (664)
Q Consensus 227 ~g~--~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (664)
+|+ +++||+||+|||.+|.+|+++.......+.....+.. ...... .....+.+++.+..++.++..++.+.+.+
T Consensus 189 dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~l~ypi~~~~~~~~~ 265 (514)
T PLN02985 189 AGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYIS--KNCRLE-EPEKLHLIMSKPSFTMLYQISSTDVRCVF 265 (514)
T ss_pred CCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEEE--ccccCC-CCCcceEEcCCCceEEEEEeCCCeEEEEE
Confidence 665 4679999999999999999995433333333233321 111111 12223456666667777888877776655
Q ss_pred EeeCCCCCCCCCcchHHHHHHHHhCC-----ChhHHHHHHc-CCcc-ceeeeecccCCCCccccCCcEEEEccCcCcCCC
Q 006025 305 FHKEPAGGVDGPEGKKERLLKIFEGW-----CDNVVDLILA-TDEE-AILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQP 377 (664)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P 377 (664)
........ .....++.+.+..+ .+.+.+.+.. .++. .+...+... .+...|..+|++|+|||||+++|
T Consensus 266 ~~~~~~~~----~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~-l~~~~~~~~~vvLiGDAaH~~~P 340 (514)
T PLN02985 266 EVLPDNIP----SIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKR-MSATLSDKKGVIVLGDAFNMRHP 340 (514)
T ss_pred EEeCCCCC----CcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCccc-ccccccCCCCEEEEecccccCCC
Confidence 54322111 11122333333332 2233333321 1111 122222221 23345677999999999999999
Q ss_pred CCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHH
Q 006025 378 NLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (664)
Q Consensus 378 ~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~ 437 (664)
++|||||+|++||..|++.|...-. .+...+...+|+.|+++|++++..++.+|+.
T Consensus 341 ~~GQGmn~AleDA~vLa~lL~~~~~----~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~a 396 (514)
T PLN02985 341 AIASGMMVLLSDILILRRLLQPLSN----LGNANKVSEVIKSFYDIRKPMSATVNTLGNA 396 (514)
T ss_pred CccccHhHHHHHHHHHHHHhhhccc----ccchhHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 9999999999999999999976311 1123456789999999999999999888764
No 44
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=2e-33 Score=309.35 Aligned_cols=340 Identities=20% Similarity=0.207 Sum_probs=211.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
..+||+||||||+|+++|+.|+++|++|+|+||........ ..+..++|++.++|+++ |+++.+...+... ..+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r---~~G~~L~p~g~~~L~~L--GL~d~l~~i~~~~-~~~ 105 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDR---IVGELLQPGGVNALKEL--GMEECAEGIGMPC-FGY 105 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccch---hhhhhcCHHHHHHHHHC--CChhhHhhcCcce-eee
Confidence 46899999999999999999999999999999975211110 11356999999999999 7888876554331 122
Q ss_pred cccccCCCCce-eeeccCCCcccccCCCeEEeeCHHHHHHHHHHhc-----CCceEEeCCeEEEEEeeCC-------eEE
Q 006025 156 NGLVDGISGSW-YIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-----GDEIILNESNVIDFKDHGD-------KVS 222 (664)
Q Consensus 156 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-----~~~~i~~~~~v~~v~~~~~-------~v~ 222 (664)
. +.+. .+.. ...++ .+ ..++.++|..+.+.|.+.+ .+..++ ..+|+++..+++ +|+
T Consensus 106 ~-v~~~-~G~~~~i~~~-------~~-~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~~~~~~v~gV~ 174 (567)
T PTZ00367 106 V-VFDH-KGKQVKLPYG-------AG-ASGVSFHFGDFVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGPGFSERAYGVE 174 (567)
T ss_pred E-EEEC-CCCEEEecCC-------CC-CceeEeEHHHHHHHHHHHHHhhcCCCcEEE-EeEEEEeccccCccCCeeEEEE
Confidence 1 1221 1211 11111 11 1245678888888887765 223344 457888754433 355
Q ss_pred EEEcC-----------------------CcEEeccEEEEecCCchhhhhhhcCCCCccccceEEEEEEe-ccCCCCcccc
Q 006025 223 VVLEN-----------------------GQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIA-DFVPADIESV 278 (664)
Q Consensus 223 v~~~~-----------------------g~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (664)
++..+ +++++||+||||||.+|.+|+.+.... +.+.....+.+.. .....+.. .
T Consensus 175 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~-~~~~~~s~~~g~~~~~~~lp~~-~ 252 (567)
T PTZ00367 175 YTEAEKYDVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYT-PASENHSHFVGLVLKNVRLPKE-Q 252 (567)
T ss_pred EecCCcccccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCC-CCcCcceEEEEEEEecccCCCC-C
Confidence 55544 568999999999999999999984322 2222223333332 11111111 2
Q ss_pred ceEEEecCeeEEEEeeCCCCeEEEEEEeeCCCCCCCCCcchHHHHHHHHhC-CChhHHHHH-HcCCc-cceeeeecccCC
Q 006025 279 GYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEG-WCDNVVDLI-LATDE-EAILRRDIYDRT 355 (664)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~l-~~~~~-~~~~~~~~~~~~ 355 (664)
....|++++..++.+|..++...+++....+.. .......+.+.+.+.. +.+.+.+.+ ..... ..+..++....
T Consensus 253 ~~~v~~g~~gpi~~yPl~~~~~r~lv~~~~~~~--p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~~~l~~~p~~~~- 329 (567)
T PTZ00367 253 HGTVFLGKTGPILSYRLDDNELRVLVDYNKPTL--PSLEEQSEWLIEDVAPHLPENMRESFIRASKDTKRIRSMPNARY- 329 (567)
T ss_pred eeEEEEcCCceEEEEEcCCCeEEEEEEecCCcC--CChHHHHHHHHHhhcccCcHHHHHHHHHhhcccCCeEEeeHhhC-
Confidence 224566777888888998887766554433211 1111122333333332 233333333 21111 12333333332
Q ss_pred CCccccCCcEEEEccCcCcCCCCCccchhHHHHHHHHHHHHHHHHhhh-cCCCCChhhHHHHHH----HHHHHhhhHHHH
Q 006025 356 PIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKK-SNESKTPIDIVSALK----SYERARRLRVAV 430 (664)
Q Consensus 356 ~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da~~La~~L~~~~~~-~~~~g~~~~~~~~L~----~Ye~~R~~~~~~ 430 (664)
+...|..+|++|||||||.+||++|||||+||+||..|+++|....+. +.+.+...+...+|+ .|+++|++++..
T Consensus 330 p~~~~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~ 409 (567)
T PTZ00367 330 PPAFPSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHAST 409 (567)
T ss_pred CCccCCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHH
Confidence 344578899999999999999999999999999999999999764321 101111224567777 999999999998
Q ss_pred HHHhHHH
Q 006025 431 IHGLARS 437 (664)
Q Consensus 431 ~~~~s~~ 437 (664)
++.++..
T Consensus 410 i~~ls~a 416 (567)
T PTZ00367 410 INILSWA 416 (567)
T ss_pred HHHHHHH
Confidence 8877754
No 45
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.96 E-value=2.4e-28 Score=243.92 Aligned_cols=386 Identities=20% Similarity=0.254 Sum_probs=245.8
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHc----CCeEEEEccCCccc---cCC-CCcccc-eeeCchHHHHHHhcChhHHHHHH
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMSAI---RGE-GQYRGP-IQIQSNALAALEAIDLDVAEEVM 145 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~----g~~~~~~~~~~~~~---~~~-g~~~~~-~~l~~~~~~~L~~l~~g~~~~~~ 145 (664)
...+||+||||||+|+++|..|... -++|.|+|....+. ... ..+... .++++.+...++.+ +.|+.+.
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~--~awd~i~ 111 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSI--GAWDHIF 111 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhc--CHHHHhh
Confidence 3479999999999999999999864 57999999763221 011 112222 45899999999999 8888886
Q ss_pred HhccccCccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHH-hc----CCceEEeCCeEEEEEee---
Q 006025 146 RAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAK-AV----GDEIILNESNVIDFKDH--- 217 (664)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~-~~----~~~~i~~~~~v~~v~~~--- 217 (664)
........++. .+|+. ....+.|+. ...+.+.+++++...++..|+. .+ .+..+....++.++...
T Consensus 112 ~~R~~~~~~~~-v~Ds~-s~a~I~~~~----d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l 185 (481)
T KOG3855|consen 112 HDRYQKFSRML-VWDSC-SAALILFDH----DNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYL 185 (481)
T ss_pred hhcccccccee-eeccc-chhhhhhcc----ccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeecccccc
Confidence 65433222222 23332 222344442 2334466788999888888884 22 22346667777776542
Q ss_pred -----CCeEEEEEcCCcEEeccEEEEecCCchhhhhhh-cCCCCccccceEEEEEEeccCC-CCccccceEEEecCeeEE
Q 006025 218 -----GDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL-FGPQEAIYSGYTCYTGIADFVP-ADIESVGYRVFLGHKQYF 290 (664)
Q Consensus 218 -----~~~v~v~~~~g~~i~adlvVgADG~~S~vR~~l-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 290 (664)
.....+++.||..+..||+|||||.||.||+.. +....+.|.++ +..+...... ......+|+.|++.|+..
T Consensus 186 ~~~~n~~~~~i~l~dg~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~h-avVAtl~l~~~~~~~~~AwQRFlP~GpiA 264 (481)
T KOG3855|consen 186 IKNDNGMWFHITLTDGINFATDLLIGADGFNSVVRKASNIDVASWNYDQH-AVVATLKLEEEAILNGVAWQRFLPTGPIA 264 (481)
T ss_pred CCCCCcceEEEEeccCceeeeceeeccccccchhhhhcCCCcccccccce-eeeEEEEecccccccchhHHhcCCCCcee
Confidence 223678899999999999999999999999998 45567778764 3334333333 334567889999988876
Q ss_pred EEeeC-CCCeEEEEEEeeCCCC-CCCCCcchHHHHHHHHhCCChh------H-----------HHHHHcCCcc-------
Q 006025 291 VSSDV-GAGKMQWYAFHKEPAG-GVDGPEGKKERLLKIFEGWCDN------V-----------VDLILATDEE------- 344 (664)
Q Consensus 291 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~------~-----------~~~l~~~~~~------- 344 (664)
+.+-. ....+.|......... ..-+++...+.+-..|..-.+. . ...+......
T Consensus 265 llpl~d~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~q~pp 344 (481)
T KOG3855|consen 265 LLPLSDTLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQQYPP 344 (481)
T ss_pred ecccccccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCcccccccCC
Confidence 65433 2345566542100000 0000111111111111110000 0 0011111000
Q ss_pred ceee-----eecc--cCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHH
Q 006025 345 AILR-----RDIY--DRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSAL 417 (664)
Q Consensus 345 ~~~~-----~~~~--~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L 417 (664)
.+.. +..+ ....+..|+.+|+.|+|||||.+||++|||.|+|+.|+..|.+.|.++...+.+.| ...-|
T Consensus 345 ~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~Dlg----S~~~L 420 (481)
T KOG3855|consen 345 SVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLG----SVEHL 420 (481)
T ss_pred eEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhccccc----chhhh
Confidence 0000 0000 01122378899999999999999999999999999999999999999988765544 45789
Q ss_pred HHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeecccCCCccc--ceeeeehhh
Q 006025 418 KSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVG--GRFFIDLAM 480 (664)
Q Consensus 418 ~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~--~~~l~~~~~ 480 (664)
+.|+++|.+.+.. ++..++. ++.++....+++..+|.+||...+... |.++|.+++
T Consensus 421 ~~y~~~~~~~N~~------ll~~vdk-l~klY~t~~p~vV~~rt~GL~~~n~l~PvKN~im~~~~ 478 (481)
T KOG3855|consen 421 EPYERERLQHNYV------LLGAVDK-LHKLYATSAPPVVLLRTFGLQLTNALAPVKNFIMVTAS 478 (481)
T ss_pred hHHHHHHhhhcch------HHHHHHH-HHHHHhccCCcEEEEeccchhhccccccHHHHHHHHHh
Confidence 9999999988763 3444555 667788888999999999998877766 377766554
No 46
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.96 E-value=6.9e-27 Score=252.83 Aligned_cols=316 Identities=18% Similarity=0.200 Sum_probs=179.3
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~ 153 (664)
....+||+||||||||+++|+.|+++|++|+|+||....... +++++ + ...++.+ ++.+.+.... +...
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~---cgg~i--~---~~~l~~l--gl~~~~~~~~-i~~~ 104 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKP---CGGAI--P---LCMVGEF--DLPLDIIDRK-VTKM 104 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCC---ccccc--c---HhHHhhh--cCcHHHHHHH-hhhh
Confidence 345689999999999999999999999999999997532211 22233 2 3555666 4444443321 1111
Q ss_pred cccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEee---CCeEEEEEcC-
Q 006025 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDH---GDKVSVVLEN- 227 (664)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~---~~~v~v~~~~- 227 (664)
.+ ... ......+... ....++..+++|..|++.|.+++.. ..++.+ ++++++.. ++.+.|++.+
T Consensus 105 ~~---~~p--~~~~v~~~~~----~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~~~~~~~v~~~~~ 174 (450)
T PLN00093 105 KM---ISP--SNVAVDIGKT----LKPHEYIGMVRREVLDSFLRERAQSNGATLING-LFTRIDVPKDPNGPYVIHYTSY 174 (450)
T ss_pred eE---ecC--CceEEEeccc----CCCCCeEEEecHHHHHHHHHHHHHHCCCEEEec-eEEEEEeccCCCCcEEEEEEec
Confidence 11 111 1112222210 0112334579999999999887522 235544 57777642 3456666532
Q ss_pred ------C--cEEeccEEEEecCCchhhhhhhcCCCCccccceEEEEEEeccCC--CCccccceEEEec----CeeEEEEe
Q 006025 228 ------G--QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVSS 293 (664)
Q Consensus 228 ------g--~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~ 293 (664)
| .+++||+||||||++|.||+.+.... ..+ ..++........ .+.......++++ ++.+.+.+
T Consensus 175 ~~~~~~g~~~~v~a~~VIgADG~~S~vrr~lg~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~Wif 251 (450)
T PLN00093 175 DSGSGAGTPKTLEVDAVIGADGANSRVAKDIDAGD-YDY--AIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVF 251 (450)
T ss_pred cccccCCCccEEEeCEEEEcCCcchHHHHHhCCCC-cce--eEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEE
Confidence 3 47999999999999999999984322 211 122222211111 1111222234443 34455666
Q ss_pred eCCCCeEEEEEEeeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcC
Q 006025 294 DVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVH 373 (664)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh 373 (664)
|.++ ....-...... ......+.+.+... ..+.+.......+...++.. .+..+|..+|++|+|||||
T Consensus 252 P~g~-~~~VG~g~~~~-------~~~~~~~~~~l~~~---~~~~l~~~~~~~~~~~~ip~-~~~~~~~~~~vlLvGDAAg 319 (450)
T PLN00093 252 PKCD-HVAVGTGTVVN-------KPAIKKYQRATRNR---AKDKIAGGKIIRVEAHPIPE-HPRPRRVRGRVALVGDAAG 319 (450)
T ss_pred ECCC-cEEEEEEEccC-------CCChHHHHHHHHHH---hhhhcCCCeEEEEEEEEccc-ccccceeCCCcEEEecccc
Confidence 7664 22211111000 01112222222211 11111111111222223332 3445788999999999999
Q ss_pred cCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHH
Q 006025 374 AMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 429 (664)
Q Consensus 374 ~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~ 429 (664)
.++|++|+||++||+++..+|+.+.++++.+ ........|+.|++..+....
T Consensus 320 ~v~P~tGeGI~~Am~sg~~AAe~i~~~~~~g----~~~~s~~~L~~Y~~~~~~~~g 371 (450)
T PLN00093 320 YVTKCSGEGIYFAAKSGRMCAEAIVEGSENG----TRMVDEADLREYLRKWDKKYW 371 (450)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHHHHhcC----CCcCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887542 111224678999997776554
No 47
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.96 E-value=9.6e-28 Score=276.23 Aligned_cols=315 Identities=23% Similarity=0.244 Sum_probs=195.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
++|+||||||+||++|+.|+++ |++|+|+||.+... .. +.++.+++++++.|+.++..+.+.+...... ....
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~-~~---G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~-~~~~ 75 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYD-TF---GWGVVFSDATLGNLRAADPVSAAAIGDAFNH-WDDI 75 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCc-cc---CcceEccHHHHHHHHhcCHHHHHHHHHhccc-CCce
Confidence 3799999999999999999998 89999999976432 22 2368899999999988753233444332111 0111
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCeEEEEEcCCcEEec
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a 233 (664)
..+.. +.. ....+.++ ..+.|..|.+.|.+++.. ..++++++|++++.. ..++
T Consensus 76 ~~~~~---g~~---------~~~~g~~~-~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~~------------~~~~ 130 (765)
T PRK08255 76 DVHFK---GRR---------IRSGGHGF-AGIGRKRLLNILQARCEELGVKLVFETEVPDDQAL------------AADA 130 (765)
T ss_pred EEEEC---CEE---------EEECCeeE-ecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhhh------------hcCC
Confidence 10000 110 01122222 468999999999987632 357888888765421 2579
Q ss_pred cEEEEecCCchhhhhhhcCCC----CccccceEEEEEEeccCCCCccccceEE-EecCee-EEEEeeCCCCeEEEEEEee
Q 006025 234 DLLIGADGIWSKVRKNLFGPQ----EAIYSGYTCYTGIADFVPADIESVGYRV-FLGHKQ-YFVSSDVGAGKMQWYAFHK 307 (664)
Q Consensus 234 dlvVgADG~~S~vR~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~ 307 (664)
|+||+|||.+|.+|+.+.... ...+.. ..|.+.... +....+.. ....+. +...++..++...|++...
T Consensus 131 D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~-~~w~g~~~~----~~~~~~~~~~~~~g~~~~~~y~~~~~~~~~~~~~~ 205 (765)
T PRK08255 131 DLVIASDGLNSRIRTRYADTFQPDIDTRRCR-FVWLGTHKV----FDAFTFAFEETEHGWFQAHAYRFDDDTSTFIVETP 205 (765)
T ss_pred CEEEEcCCCCHHHHHHHHhhcCCceecCCCc-eEEecCCCc----ccceeEEEEecCCceEEEEEeeeCCCCcEEEEEcC
Confidence 999999999999999863211 112222 223332111 11111110 011221 1223455555555544432
Q ss_pred CCC---C--CCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCc----EEEEccCcCcCCCC
Q 006025 308 EPA---G--GVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGR----VTLLGDSVHAMQPN 378 (664)
Q Consensus 308 ~~~---~--~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~r----v~LvGDAAh~~~P~ 378 (664)
... . .........+.+.+.|..|.+.. +.+..........|..+......+|+.+| ++|+|||||.++|+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~-~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~~~P~ 284 (765)
T PRK08255 206 EEVWRAAGLDEMSQEESIAFCEKLFADYLDGH-PLMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHTAHFS 284 (765)
T ss_pred HHHHHhcCCccCCHHHHHHHHHHHhHHhcCCC-cccccccccccceeeecceeccCCCccCCCcccEEEEEcCcccCCCC
Confidence 110 0 01122344566777788775532 22222211111224444444567899999 99999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHH
Q 006025 379 LGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARS 437 (664)
Q Consensus 379 ~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~ 437 (664)
.|||+|+||+||..|+++|.... .+++.+|+.|+++|++++..++..++.
T Consensus 285 ~GqG~~~aieDa~~La~~L~~~~---------~~~~~al~~ye~~R~~r~~~~~~~s~~ 334 (765)
T PRK08255 285 IGSGTKLALEDAIELARCLHEHP---------GDLPAALAAYEEERRVEVLRIQNAARN 334 (765)
T ss_pred cchhHHHHHHHHHHHHHHHHHcc---------ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997641 146899999999999999999988874
No 48
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.96 E-value=5.9e-27 Score=242.16 Aligned_cols=288 Identities=20% Similarity=0.209 Sum_probs=174.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
+||+||||||+|+++|+.|+++|++|+|+||...+.. . ..+..+.+++++.+...+ . ... .. .. ...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~-~---~~~~~~~~~~~~~l~~~~--~-~~~-~~--~~--~~~- 67 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRY-K---PCGGALSPRVLEELDLPL--E-LIV-NL--VR--GAR- 67 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCc-c---cccCccCHhHHHHhcCCc--h-hhh-hh--ee--eEE-
Confidence 6999999999999999999999999999999864422 1 113457777777776552 1 111 10 00 000
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCeEEEEEcCC-cEEecc
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENG-QCYAGD 234 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~~g-~~i~ad 234 (664)
+.. ..+.. .... ...+..+.++|..|.+.|.+.+.. ..++++++|+++..+++++.+.+.++ .+++||
T Consensus 68 ~~~-~~~~~-~~~~-------~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~ 138 (295)
T TIGR02032 68 FFS-PNGDS-VEIP-------IETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAK 138 (295)
T ss_pred EEc-CCCcE-EEec-------cCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeC
Confidence 111 11111 1111 112345789999999999887643 35778999999998888888776654 689999
Q ss_pred EEEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCccccceEEEec----CeeEEEEeeCCCCeEEEEEEeeCCC
Q 006025 235 LLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLG----HKQYFVSSDVGAGKMQWYAFHKEPA 310 (664)
Q Consensus 235 lvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (664)
+||+|||.+|.+|+.+...... +.....+..................+.+ ++.+.+.+|..++.+.+........
T Consensus 139 ~vv~a~G~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~ 217 (295)
T TIGR02032 139 IVIGADGSRSIVAKKLGLRKEP-RELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAE 217 (295)
T ss_pred EEEECCCcchHHHHhcCCCCCC-cceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCC
Confidence 9999999999999987322211 1111222222222111122222333332 2356667787777654433322211
Q ss_pred CCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHH
Q 006025 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDG 390 (664)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da 390 (664)
......+.+.+.... .+. +..........+.+.......+|..+|++|+|||||+++|++|||||+||+||
T Consensus 218 ----~~~~~~~~~~~~~~~-~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a 288 (295)
T TIGR02032 218 ----EGEDLKKYLKDFLAR-RPE----LKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSG 288 (295)
T ss_pred ----CCCCHHHHHHHHHHh-Ccc----cccCcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHH
Confidence 112222333222222 121 11111112222333333455678899999999999999999999999999999
Q ss_pred HHHHHHH
Q 006025 391 YQLAVEL 397 (664)
Q Consensus 391 ~~La~~L 397 (664)
..||+.|
T Consensus 289 ~~aa~~~ 295 (295)
T TIGR02032 289 DVAAEVI 295 (295)
T ss_pred HHHHhhC
Confidence 9999864
No 49
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.96 E-value=3.9e-26 Score=245.03 Aligned_cols=307 Identities=20% Similarity=0.246 Sum_probs=179.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
+||+||||||||+++|+.|++.|++|+|+|++...... +.+. +++ +.++.+ ++.+++.... .....+
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~---cg~~--i~~---~~l~~l--~i~~~~~~~~-~~~~~~-- 67 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKP---CGGA--IPP---CLIEEF--DIPDSLIDRR-VTQMRM-- 67 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCc---CcCC--cCH---hhhhhc--CCchHHHhhh-cceeEE--
Confidence 69999999999999999999999999999997221111 1122 343 345666 4445544321 111111
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcC------C-
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLEN------G- 228 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~------g- 228 (664)
... .+. ...... .....+..+++|..|++.|.+++. ...++. .+|+++..+++.+.|++.+ |
T Consensus 68 -~~~-~~~-~~~~~~-----~~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~-~~v~~v~~~~~~~~v~~~~~~~~~~~~ 138 (388)
T TIGR02023 68 -ISP-SRV-PIKVTI-----PSEDGYVGMVRREVFDSYLRERAQKAGAELIH-GLFLKLERDRDGVTLTYRTPKKGAGGE 138 (388)
T ss_pred -EcC-CCc-eeeecc-----CCCCCceEeeeHHHHHHHHHHHHHhCCCEEEe-eEEEEEEEcCCeEEEEEEeccccCCCc
Confidence 111 111 111110 011222346999999999988752 223544 4699998888888887764 2
Q ss_pred -cEEeccEEEEecCCchhhhhhhcCCCCccccceEEEEEEeccCC--CCccccceEEEec----CeeEEEEeeCCCCeEE
Q 006025 229 -QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVP--ADIESVGYRVFLG----HKQYFVSSDVGAGKMQ 301 (664)
Q Consensus 229 -~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 301 (664)
.+++||+||+|||.+|.+|+.+.......+. .++........ ...+.....++++ ++.+.+.+|.++ ...
T Consensus 139 ~~~i~a~~VI~AdG~~S~v~r~lg~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~-~~~ 215 (388)
T TIGR02023 139 KGSVEADVVIGADGANSPVAKELGLPKNLPRV--IAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGD-HIA 215 (388)
T ss_pred ceEEEeCEEEECCCCCcHHHHHcCCCCCCcEE--EEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCC-eeE
Confidence 4799999999999999999988432222111 22222221111 0111122223322 344556666653 222
Q ss_pred EEEEeeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCcc
Q 006025 302 WYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQ 381 (664)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~Gq 381 (664)
.... ... .......+++.+..+.. +............+. ..+..+|..++++|||||||.++|++||
T Consensus 216 vg~~-~~~------~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~ip-~~~~~~~~~~~v~lvGDAAg~v~P~tG~ 282 (388)
T TIGR02023 216 VGTG-TGT------HGFDAKQLQANLRRRAG-----LDGGQTIRREAAPIP-MKPRPRWDFGRAMLVGDAAGLVTPASGE 282 (388)
T ss_pred EeEE-ECC------CCCCHHHHHHHHHHhhC-----CCCceEeeeeeEecc-ccccccccCCCEEEEeccccCcCCcccc
Confidence 2111 110 11122334333332211 000111111111222 2345678889999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHH
Q 006025 382 GGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAV 430 (664)
Q Consensus 382 G~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~ 430 (664)
|+++||++|..+|+.|.++++.+ ....|+.|+++.+.....
T Consensus 283 GI~~A~~sg~~aa~~i~~~l~~~--------~~~~L~~Y~~~~~~~~~~ 323 (388)
T TIGR02023 283 GIYFAMKSGQMAAQAIAEYLQNG--------DATDLRHYERKFMKLYGT 323 (388)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987542 146799999998876654
No 50
>PRK11445 putative oxidoreductase; Provisional
Probab=99.95 E-value=9.9e-27 Score=245.91 Aligned_cols=306 Identities=16% Similarity=0.122 Sum_probs=170.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
+||+||||||||+++|+.|++. ++|+|+||.+...........+..++++++++|++++........... ...
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-----~~~- 74 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-----QIF- 74 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-----ccc-
Confidence 6999999999999999999999 999999998643210000001346899999999999532111110000 000
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC-CceEEeCCeEEEEEeeCCeEEEEE-cCCc--EEec
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVL-ENGQ--CYAG 233 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~v~~~~~~v~v~~-~~g~--~i~a 233 (664)
. .....+.... ....+.+ .+.++|..|++.|.+... ...+++++++++++.+++++.|++ .+|+ +++|
T Consensus 75 --~----~~~~~~~~~~-~~~~~~~-~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a 146 (351)
T PRK11445 75 --A----VKTIDLANSL-TRNYQRS-YINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITA 146 (351)
T ss_pred --e----eeEecccccc-hhhcCCC-cccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEe
Confidence 0 0001111000 0011112 246999999999988653 235788999999998888888886 4664 6999
Q ss_pred cEEEEecCCchhhhhhhcCCC-CccccceEEEEEEeccCCCCccccceEEEec---CeeEEEEeeCCCCeEEEEEEeeCC
Q 006025 234 DLLIGADGIWSKVRKNLFGPQ-EAIYSGYTCYTGIADFVPADIESVGYRVFLG---HKQYFVSSDVGAGKMQWYAFHKEP 309 (664)
Q Consensus 234 dlvVgADG~~S~vR~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 309 (664)
|+||+|||++|.+|+.+.... ...|. ++....... .+.+ .+..++. ...+.|.+|..+....... .+
T Consensus 147 ~~vV~AdG~~S~vr~~l~~~~~~~~~~---~~~~~~~~~-~~~~--~~~~~f~~~~~~~~~W~~p~~~~~~~g~~---~~ 217 (351)
T PRK11445 147 RYLVGADGANSMVRRHLYPDHQIRKYV---AIQQWFAEK-HPVP--FYSCIFDNEITDCYSWSISKDGYFIFGGA---YP 217 (351)
T ss_pred CEEEECCCCCcHHhHHhcCCCchhhEE---EEEEEecCC-CCCC--CcceEEeccCCCceEEEeCCCCcEEeccc---cc
Confidence 999999999999999885332 22232 222211111 1100 0111111 1223333343221111000 01
Q ss_pred CCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCC--CCccccCCcEEEEccCcCcCCCCCccchhHHH
Q 006025 310 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRT--PIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAI 387 (664)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al 387 (664)
. .......+.+.+.+........+.+. .....+.... ....+..+|++|||||||.++|++|||+|+|+
T Consensus 218 ~---~~~~~~~~~l~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al 288 (351)
T PRK11445 218 M---KDGRERFETLKEKLSAFGFQFGKPVK------TEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYAL 288 (351)
T ss_pred c---cchHHHHHHHHHHHHhcccccccccc------cccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHH
Confidence 0 00000111111111111000000000 0000011111 11123468999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHH
Q 006025 388 EDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 428 (664)
Q Consensus 388 ~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~ 428 (664)
+||..|++.|.+.. ...|+.|++.++.-.
T Consensus 289 ~sa~~la~~l~~~~------------~~~~~~y~~~~~~~~ 317 (351)
T PRK11445 289 DSARILSEVLNKQP------------EKLNTAYWRKTRKLR 317 (351)
T ss_pred HhHHHHHHHHHhcc------------cchHHHHHHHHHHHH
Confidence 99999999997642 356899999777544
No 51
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.95 E-value=4.1e-25 Score=236.99 Aligned_cols=312 Identities=18% Similarity=0.208 Sum_probs=175.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
+||+||||||||+++|+.|+++|++|+|+||....... +.+. ++ ...|+.+ ++.+.+.... +....+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~---cg~~--i~---~~~l~~~--g~~~~~~~~~-i~~~~~-- 67 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKP---CGGA--IP---LCMVDEF--ALPRDIIDRR-VTKMKM-- 67 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCC---cccc--cc---HhhHhhc--cCchhHHHhh-hceeEE--
Confidence 58999999999999999999999999999997532211 2222 22 2456666 4444443321 111111
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEe---eCCeEEEEE--cC---
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKD---HGDKVSVVL--EN--- 227 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~---~~~~v~v~~--~~--- 227 (664)
.. .......+... .....+.+.++|..|++.|.+++.. ..++.+ ++++++. .++.+.|++ .+
T Consensus 68 -~~--p~~~~~~~~~~----~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~-~~~~i~~~~~~~~~~~v~~~~~~~~~ 139 (398)
T TIGR02028 68 -IS--PSNIAVDIGRT----LKEHEYIGMLRREVLDSFLRRRAADAGATLING-LVTKLSLPADADDPYTLHYISSDSGG 139 (398)
T ss_pred -ec--CCceEEEeccC----CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcc-eEEEEEeccCCCceEEEEEeeccccc
Confidence 11 11112222210 0111223479999999999887632 245555 4777653 234455554 22
Q ss_pred --C--cEEeccEEEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCC--CccccceEEEec----CeeEEEEeeCCC
Q 006025 228 --G--QCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPA--DIESVGYRVFLG----HKQYFVSSDVGA 297 (664)
Q Consensus 228 --g--~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~ 297 (664)
| .+++|++||+|||++|.||+.+.... +.....+......... ........++++ ++.+.+.+|.++
T Consensus 140 ~~g~~~~i~a~~VIgADG~~S~v~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~ 216 (398)
T TIGR02028 140 PSGTRCTLEVDAVIGADGANSRVAKEIDAGD---YSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCD 216 (398)
T ss_pred cCCCccEEEeCEEEECCCcchHHHHHhCCCC---cceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCC
Confidence 3 47999999999999999999984321 1111222222221111 111222334443 345667777663
Q ss_pred CeEEEEEEeeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCC
Q 006025 298 GKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQP 377 (664)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P 377 (664)
.... ...... .......+.+.+... ....+.......+....+.. .+..+|..+|++|||||||+++|
T Consensus 217 -~~~V-G~g~~~------~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~ip~-~~~~~~~~~~~llvGDAAg~v~P 284 (398)
T TIGR02028 217 -HVAV-GTGTVA------AKPEIKRLQSGIRAR---AAGKVAGGRIIRVEAHPIPE-HPRPRRVVGRVALVGDAAGYVTK 284 (398)
T ss_pred -eEEE-EEEeCC------CCccHHHHHHhhhhh---hhhccCCCcEEEEEEEeccc-cccccEECCCEEEEEcCCCCCCc
Confidence 3322 111110 111223333333211 00101111111122222322 23457888999999999999999
Q ss_pred CCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHH
Q 006025 378 NLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 429 (664)
Q Consensus 378 ~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~ 429 (664)
++|+||++||+++..+|+.+.++++.+ .+......|+.|++..+....
T Consensus 285 ~tGeGI~~A~~sg~~aa~~i~~~~~~~----~~~~~~~~l~~Y~~~~~~~~~ 332 (398)
T TIGR02028 285 CSGEGIYFAAKSGRMCAEAIVEESRLG----GAVTEEGDLAGYLRRWDKEYR 332 (398)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhcC----CCcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887642 111235679999997765543
No 52
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.94 E-value=5.3e-24 Score=228.58 Aligned_cols=318 Identities=21% Similarity=0.183 Sum_probs=188.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
..+||+||||||||++||+.|++.|++|+|+||+..+...... +-.+.+..++.+... ...++. . .+....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~---~~~~~~~~l~~l~~~---~~~~i~-~-~v~~~~~ 73 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC---GGGLSPRALEELIPD---FDEEIE-R-KVTGARI 73 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc---cceechhhHHHhCCC---cchhhh-e-eeeeeEE
Confidence 4689999999999999999999999999999998655332211 122444444333221 111111 1 1111111
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCeEEEEEcC-CcEEe
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLEN-GQCYA 232 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~~-g~~i~ 232 (664)
. .. .....+.. ..+.++.++|..|+++|.+++.. ..++.+++++.+..+++++.+.... +.+++
T Consensus 74 ~--~~--~~~~~~~~---------~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 140 (396)
T COG0644 74 Y--FP--GEKVAIEV---------PVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVR 140 (396)
T ss_pred E--ec--CCceEEec---------CCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEE
Confidence 1 00 01111111 11447899999999999877632 3578899999999988877655544 47899
Q ss_pred ccEEEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCccccceEEE---ecCeeEEEEeeCCCCeEEEEEEeeCC
Q 006025 233 GDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVF---LGHKQYFVSSDVGAGKMQWYAFHKEP 309 (664)
Q Consensus 233 adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (664)
|++||+|||.+|.+++.+................+.. .+.+.....+..+ ..++.+.+.+|.+++....-+.....
T Consensus 141 a~~vI~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~ 219 (396)
T COG0644 141 AKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIE-VPDDGDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLD 219 (396)
T ss_pred cCEEEECCCcchHHHHHhCCCCCChhheeEEeEEEEe-cCCCCceEEEEecCCccCCCceEEEEECCCceEEEEEEEecC
Confidence 9999999999999999995441111111122222211 2211111111111 23456777888887755443332222
Q ss_pred CCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCcc-ccCCcEEEEccCcCcCCCCCccchhHHHH
Q 006025 310 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFT-WGRGRVTLLGDSVHAMQPNLGQGGCMAIE 388 (664)
Q Consensus 310 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~rv~LvGDAAh~~~P~~GqG~n~al~ 388 (664)
. . ...... +.++.|..... ....+.......+....+....+... ++.++++||||||.+++|++|.|+..||.
T Consensus 220 ~--~-~~~~~~-~~l~~f~~~~~-~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~ 294 (396)
T COG0644 220 D--P-SLSPFL-ELLERFKEHPA-IRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIK 294 (396)
T ss_pred C--c-CCCchH-HHHHHHHhCcc-cchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHH
Confidence 1 1 111111 33333322211 11111111222233333333333334 78899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHH
Q 006025 389 DGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 429 (664)
Q Consensus 389 Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~ 429 (664)
+|..+|+.|.++...+ ...|..|++..+....
T Consensus 295 sg~~Aa~~i~~~~~~~---------~~~l~~Y~~~~~~~~~ 326 (396)
T COG0644 295 SGKLAAEAIAEALEGG---------EEALAEYERLLRKSLA 326 (396)
T ss_pred HHHHHHHHHHHHHHcC---------hhHHHHHHHHHHHHHH
Confidence 9999999999986531 4677778888776543
No 53
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.93 E-value=8.6e-24 Score=228.82 Aligned_cols=332 Identities=17% Similarity=0.136 Sum_probs=177.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
..+||+||||||||+++|+.|+++|++|+|+||...+.... ..++. +.... ++.+.+.+.....-........+
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~--~~gg~-l~~~~---~e~l~~~~~~~~~~~~~~~~~~~ 77 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN--VTGGR-LYAHS---LEHIIPGFADSAPVERLITHEKL 77 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcc--cccce-echhh---HHHHhhhhhhcCcccceeeeeeE
Confidence 46899999999999999999999999999999986543211 01111 22222 22221111110000000011111
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCCcEEec
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a 233 (664)
. +... .+.....+... ......+..+.+.|..|+++|.+.+. ...++.+++|++++.+++.+.+...+|++++|
T Consensus 78 ~-~~~~-~~~~~~~~~~~--~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A 153 (428)
T PRK10157 78 A-FMTE-KSAMTMDYCNG--DETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEA 153 (428)
T ss_pred E-EEcC-CCceeeccccc--cccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEEC
Confidence 1 1111 11111121110 00011223578899999999988762 23578899999998877777555567788999
Q ss_pred cEEEEecCCchhhhhhhcCCCCccccceE-EEEEEeccCCCCcc-------ccc-eEEEec---Ce---eEEEEeeCCCC
Q 006025 234 DLLIGADGIWSKVRKNLFGPQEAIYSGYT-CYTGIADFVPADIE-------SVG-YRVFLG---HK---QYFVSSDVGAG 298 (664)
Q Consensus 234 dlvVgADG~~S~vR~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~-~~~~~~---~~---~~~~~~~~~~~ 298 (664)
++||+|||++|.+++.+............ .+.......+...+ ..+ ...+.+ .+ ..+ .++. ..
T Consensus 154 ~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~-~~~~-~~ 231 (428)
T PRK10157 154 KTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGF-LYTN-EN 231 (428)
T ss_pred CEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCcee-EEEc-CC
Confidence 99999999999999987322222222111 11111111110000 011 111211 10 011 1111 12
Q ss_pred eEEEEEEeeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecc--cCCCCccccCCcEEEEccCcCcCC
Q 006025 299 KMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIY--DRTPIFTWGRGRVTLLGDSVHAMQ 376 (664)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~rv~LvGDAAh~~~ 376 (664)
.+...+..... ...........+++.|.. ++.+...+......++....+. .....+....+++++|||||.+++
T Consensus 232 ~~svG~~~~~~--~~~~~~~~~~~~l~~~~~-~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg~v~ 308 (428)
T PRK10157 232 TLSLGLVCGLH--HLHDAKKSVPQMLEDFKQ-HPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCM 308 (428)
T ss_pred eEEEEEEEehH--HhcccCCCHHHHHHHHHh-CchHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEeccccccc
Confidence 22211111100 001112334555555543 3444443322211111111111 112234567899999999999999
Q ss_pred C--CCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHH
Q 006025 377 P--NLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 428 (664)
Q Consensus 377 P--~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~ 428 (664)
| ++|+|+++||.++..+|+.+.++++.+ +.....|..|++.-+..+
T Consensus 309 p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~------~~s~~~l~~Y~~~l~~~~ 356 (428)
T PRK10157 309 NLGFTIRGMDLAIAAGEAAAKTVLSAMKSD------DFSKQKLAEYRQHLESGP 356 (428)
T ss_pred ccCceeeeHHHHHHHHHHHHHHHHHHHhcC------CcchhhHHHHHHHHHHhH
Confidence 8 599999999999999999999987643 223567999998766553
No 54
>PRK10015 oxidoreductase; Provisional
Probab=99.93 E-value=5.9e-24 Score=229.79 Aligned_cols=329 Identities=17% Similarity=0.138 Sum_probs=176.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
..+||+||||||||+++|+.|++.|++|+|+||.+.+.... .+++. +....+ +.+.+++..+..-........+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~-~~gg~--i~~~~~---~~l~~~~~~~~~i~~~~~~~~~ 77 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKN-MTGGR--LYAHTL---EAIIPGFAASAPVERKVTREKI 77 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCccc-ccCce--eecccH---HHHcccccccCCccccccceeE
Confidence 46899999999999999999999999999999986542211 01111 222222 2221111110000000111111
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCCcEEec
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a 233 (664)
. +.+.. +.....+.... .......++.+.|..|+++|.+++. ...++.+++|+++..+++++.....++.+++|
T Consensus 78 ~-~~~~~-~~~~~~~~~~~--~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A 153 (429)
T PRK10015 78 S-FLTEE-SAVTLDFHREQ--PDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEA 153 (429)
T ss_pred E-EEeCC-CceEeecccCC--CCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEEC
Confidence 1 11111 11122222110 0001112578999999999988763 23577889999998777777644455678999
Q ss_pred cEEEEecCCchhhhhhhcCCCCc-cccceEEEEEEeccCCCCccccceEEEecCeeEEE--------------EeeCCCC
Q 006025 234 DLLIGADGIWSKVRKNLFGPQEA-IYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFV--------------SSDVGAG 298 (664)
Q Consensus 234 dlvVgADG~~S~vR~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 298 (664)
++||+|||.+|.+++.+...... ......++...... +.+.-...+....+.+.+++ .++. .+
T Consensus 154 ~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~-~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~~~-~d 231 (429)
T PRK10015 154 NVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGL-TPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLYTN-KD 231 (429)
T ss_pred CEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeC-CHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEEEc-CC
Confidence 99999999999999987322111 11111222222211 11100000000001111111 1111 12
Q ss_pred eEEE--EEEeeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeeccc--CCCCccccCCcEEEEccCcCc
Q 006025 299 KMQW--YAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYD--RTPIFTWGRGRVTLLGDSVHA 374 (664)
Q Consensus 299 ~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~rv~LvGDAAh~ 374 (664)
.+.. ........ ........+++.|. .++.+.+.+......+.....++. ....++.+.+++++|||||+.
T Consensus 232 ~v~vGv~~~~~~~~----~~~~~~~~~l~~~~-~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~ 306 (429)
T PRK10015 232 SISLGLVCGLGDIA----HAQKSVPQMLEDFK-QHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGF 306 (429)
T ss_pred cEEEEEEEehhhhc----cCCCCHHHHHHHHh-hChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEeccccc
Confidence 2221 11111000 11223445555564 344455554333222222222221 112346778999999999999
Q ss_pred CCC--CCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhH
Q 006025 375 MQP--NLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLR 427 (664)
Q Consensus 375 ~~P--~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~ 427 (664)
++| ++|+||++||.++..+|+.+.++++.+ +.....|+.|++..+..
T Consensus 307 v~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~------d~s~~~l~~Y~~~~~~~ 355 (429)
T PRK10015 307 CLNLGFTVRGMDLAIASAQAAATTVIAAKERA------DFSASSLAQYKRELEQS 355 (429)
T ss_pred ccccCccccchhHHHHHHHHHHHHHHHHHhcC------CCccccHHHHHHHHHHC
Confidence 985 699999999999999999999987642 12346679999877654
No 55
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.91 E-value=1.9e-22 Score=199.59 Aligned_cols=343 Identities=18% Similarity=0.171 Sum_probs=209.9
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc-cccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccC
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS-AIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~-~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~ 152 (664)
.....||+|||||.+|.++|..|++.|-+|.|+||+-. |.+-.| ..++|.+...|.+| |+.+.+...-....
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivG-----EllQPGG~~~L~~L--Gl~Dcve~IDAQ~v 114 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVG-----ELLQPGGYLALSKL--GLEDCVEGIDAQRV 114 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHH-----HhcCcchhHHHHHh--CHHHHhhcccceEe
Confidence 44568999999999999999999999999999999753 333333 35899999999999 56666543322111
Q ss_pred ccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhc---CCceEEeCCeEEEEEeeCCeEE-EEEc--
Q 006025 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS-VVLE-- 226 (664)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~v~~~~~~v~-v~~~-- 226 (664)
.....+.++.. ..+.|+.. .....+.+...+...|.+.|++.+ ++.+ ....+|.++-++++-+. |++.
T Consensus 115 ~Gy~ifk~gk~--v~~pyP~~---~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~-~eeGtV~sLlee~gvvkGV~yk~k 188 (509)
T KOG1298|consen 115 TGYAIFKDGKE--VDLPYPLK---NFPSDPSGRSFHNGRFVQRLRKKAASLPNVR-LEEGTVKSLLEEEGVVKGVTYKNK 188 (509)
T ss_pred eeeEEEeCCce--eeccCCCc---CCCCCcccceeeccHHHHHHHHHHhcCCCeE-EeeeeHHHHHhccCeEEeEEEecC
Confidence 11111333321 12233211 111233466778889999998875 3333 34567777666555332 4443
Q ss_pred CCc--EEeccEEEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEE
Q 006025 227 NGQ--CYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYA 304 (664)
Q Consensus 227 ~g~--~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (664)
.|+ +..|.+-|.|||..|.+||.+.......-. ..+.|+.-.-........-+..++.....+.+++....+.+.+
T Consensus 189 ~gee~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~--S~fVG~vl~N~~l~~p~hghvIL~~pspil~Y~ISStEvRcl~ 266 (509)
T KOG1298|consen 189 EGEEVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVP--SYFVGLVLKNCRLPAPNHGHVILSKPSPILVYQISSTEVRCLV 266 (509)
T ss_pred CCceEEEecceEEEecchhHHHHHHhcCCcccccc--hheeeeeecCCCCCCCCcceEEecCCCcEEEEEecchheEEEE
Confidence 443 577999999999999999999544333211 1122322111111222233455555556677888877777665
Q ss_pred EeeCCCCCCCCCcchHHHHHHHHhCC-ChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccch
Q 006025 305 FHKEPAGGVDGPEGKKERLLKIFEGW-CDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGG 383 (664)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~ 383 (664)
-+..+.-...........+.+..... .+.+.+.+.+..++.-.+.......+.....+.+++|+|||...-||++|.||
T Consensus 267 ~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~irsmpn~~mpa~~~~~~G~illGDAfNMRHPltggGM 346 (509)
T KOG1298|consen 267 DVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGNIRSMPNSSMPATLNDKKGVILLGDAFNMRHPLTGGGM 346 (509)
T ss_pred ecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccchhcCccccCCCCcCCCCceEEEcccccccCCccCCce
Confidence 44332111111112223333333332 33444444433333222222222334445567899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhH
Q 006025 384 CMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLA 435 (664)
Q Consensus 384 n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s 435 (664)
..++.|...|.+.|.-... -.....+.+.+++|.-.|++....+..++
T Consensus 347 tV~l~Di~lLr~ll~pl~d----L~d~ekv~~~i~sFy~~RKp~s~tINtLa 394 (509)
T KOG1298|consen 347 TVALSDIVLLRRLLKPLPD----LSDAEKVSDYIKSFYWIRKPYSATINTLA 394 (509)
T ss_pred EeehhHHHHHHHHhccccc----cccHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 9999999999998876422 12345667889999999999877665544
No 56
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.90 E-value=8.2e-22 Score=212.03 Aligned_cols=307 Identities=16% Similarity=0.126 Sum_probs=163.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccccc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGL 158 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~~ 158 (664)
||+||||||+|+++|+.|++.|++|+|+|+.+...... ...+... .++.+ ++ +.+..... ..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~-----~~~~~~~---~~~~~--~~-~~~~~~~~-~~------ 62 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNH-----TYGVWDD---DLSDL--GL-ADCVEHVW-PD------ 62 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCc-----cccccHh---hhhhh--ch-hhHHhhcC-CC------
Confidence 79999999999999999999999999999875321100 1112221 12233 22 11111100 00
Q ss_pred ccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEee-CCeEEEEEcCCcEEeccE
Q 006025 159 VDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDH-GDKVSVVLENGQCYAGDL 235 (664)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~-~~~v~v~~~~g~~i~adl 235 (664)
.....++.. ......+ ...++|..|.+.|.+.+.. ..+ ...+|++++.+ ++.+.|++.+|++++|++
T Consensus 63 ------~~~~~~~~~--~~~~~~~-~~~i~~~~l~~~l~~~~~~~gv~~-~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~ 132 (388)
T TIGR01790 63 ------VYEYRFPKQ--PRKLGTA-YGSVDSTRLHEELLQKCPEGGVLW-LERKAIHAEADGVALSTVYCAGGQRIQARL 132 (388)
T ss_pred ------ceEEecCCc--chhcCCc-eeEEcHHHHHHHHHHHHHhcCcEE-EccEEEEEEecCCceeEEEeCCCCEEEeCE
Confidence 000111100 0011222 2368999999999887632 234 46788888877 667888888888999999
Q ss_pred EEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCccccceEEE-ecC--------ee--EEEEeeCCCCeEEEEE
Q 006025 236 LIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVF-LGH--------KQ--YFVSSDVGAGKMQWYA 304 (664)
Q Consensus 236 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~--~~~~~~~~~~~~~~~~ 304 (664)
||+|||.+|.+++...+. ...+.....+.......+.+.+...+.-+ ..+ .. +++.+|.+++...+..
T Consensus 133 VI~A~G~~s~~~~~~~~~-~~~~q~~~G~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~ 211 (388)
T TIGR01790 133 VIDARGFGPLVQYVRFPL-NVGFQVAYGVEARLSRPPHGPSSMVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEE 211 (388)
T ss_pred EEECCCCchhcccccCCC-CceEEEEEEEEEEEcCCCCCCCceEEEeccccccccccccCCCCceEEEeecCCCeEEEEe
Confidence 999999999776443211 11121111111111111111111001001 010 11 4555666655443211
Q ss_pred EeeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchh
Q 006025 305 FHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGC 384 (664)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 384 (664)
...... .....+.+.+.+..+.....-..... ... .+.+.+......+..+|+++||||||.++|++|+|++
T Consensus 212 -~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~~i--~~~-~~~~iP~~~~~~~~~~rv~liGdAAg~~~P~tG~Gi~ 283 (388)
T TIGR01790 212 -TSLADR----PALPRDRLRQRILARLNAQGWQIKTI--EEE-EWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVA 283 (388)
T ss_pred -ccccCC----CCCCHHHHHHHHHHHHHHcCCeeeEE--Eee-eeEEEecccCCCccCCCeeeeechhcCcCCcccccHH
Confidence 111100 11112233332222111000000000 000 1111122112234789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHH
Q 006025 385 MAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAV 430 (664)
Q Consensus 385 ~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~ 430 (664)
.|+++|..||+.|.++++.+ ...+++.|++..+++..+
T Consensus 284 ~al~~a~~la~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 284 RALSDAPGLAAAIAQALCQS--------SELATAAWDGLWPTERRR 321 (388)
T ss_pred HHHHHHHHHHHHHHHHhccC--------HHHHHHHHHHhchHHHHH
Confidence 99999999999999887532 357888887665555443
No 57
>PLN02463 lycopene beta cyclase
Probab=99.87 E-value=6.5e-20 Score=197.54 Aligned_cols=313 Identities=16% Similarity=0.193 Sum_probs=172.3
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~ 153 (664)
....+||+||||||||+++|..|+++|++|+|+|+.+...... ...+ -...++.+ ++.+.+... . ...
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~-----~~g~---w~~~l~~l--gl~~~l~~~-w-~~~ 92 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPN-----NYGV---WVDEFEAL--GLLDCLDTT-W-PGA 92 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhcc-----ccch---HHHHHHHC--CcHHHHHhh-C-CCc
Confidence 4456899999999999999999999999999999864321100 0001 12346666 454444321 1 111
Q ss_pred cccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCeEEEEEcCCcEE
Q 006025 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDKVSVVLENGQCY 231 (664)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~v~v~~~~g~~i 231 (664)
.+ +.+... ....+.++ ..++|..|.+.|.+++.. ..++ ..+|++++.+++++.|++++|+++
T Consensus 93 ~v--~~~~~~------------~~~~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~dG~~i 156 (447)
T PLN02463 93 VV--YIDDGK------------KKDLDRPY-GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCDDGVKI 156 (447)
T ss_pred EE--EEeCCC------------CccccCcc-eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEECCCCEE
Confidence 11 111100 00112233 368999999999887632 2343 579999999888899999999999
Q ss_pred eccEEEEecCCchhhhhhhcCCCCccccceEEEEEE-ecc--CCCCccccceEEE----ec--------C---eeEEEEe
Q 006025 232 AGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGI-ADF--VPADIESVGYRVF----LG--------H---KQYFVSS 293 (664)
Q Consensus 232 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~----~~--------~---~~~~~~~ 293 (664)
+|++||+|||.+|.+++.. .+.+.++...+++ ... .+.+.+...+.-| .+ . ..+++..
T Consensus 157 ~A~lVI~AdG~~s~l~~~~----~~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p~FlY~~ 232 (447)
T PLN02463 157 QASLVLDATGFSRCLVQYD----KPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLPTFLYAM 232 (447)
T ss_pred EcCEEEECcCCCcCccCCC----CCCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCCceEEEE
Confidence 9999999999999987532 1111222222222 221 1111111000000 00 0 1244555
Q ss_pred eCCCCeEEEEEE--eeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccC
Q 006025 294 DVGAGKMQWYAF--HKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDS 371 (664)
Q Consensus 294 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDA 371 (664)
|.+++.+..-.. ...+. ......++.+.+.++.+.-. ...........++.-.+ .....+|++++|||
T Consensus 233 P~~~~~~~vEeT~l~s~~~---~~~~~lk~~L~~~l~~~Gi~------~~~i~~~E~~~IPmg~~-~~~~~~~~~~~G~a 302 (447)
T PLN02463 233 PFSSNRIFLEETSLVARPG---LPMDDIQERMVARLRHLGIK------VKSVEEDEKCVIPMGGP-LPVIPQRVLGIGGT 302 (447)
T ss_pred ecCCCeEEEEeeeeecCCC---CCHHHHHHHHHHHHHHCCCC------cceeeeeeeeEeeCCCC-CCCCCCCEEEecch
Confidence 665554321111 01110 00111122222222211100 00111111222221112 12346799999999
Q ss_pred cCcCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCC--ChhhHH---HHHHHHHHHhhhHH
Q 006025 372 VHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK--TPIDIV---SALKSYERARRLRV 428 (664)
Q Consensus 372 Ah~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g--~~~~~~---~~L~~Ye~~R~~~~ 428 (664)
|..++|.+|.|+..++..|..+|+.+.++++.+...+ ...-.. +.|..|++.|+...
T Consensus 303 ag~v~p~tG~~i~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~w~~lw~~~~~~~~~~ 364 (447)
T PLN02463 303 AGMVHPSTGYMVARTLAAAPIVADAIVEYLGSSRSNSFRGDELSAEVWNDLWPIERRRQREF 364 (447)
T ss_pred hcCcCCCccccHHHHHHHHHHHHHHHHHHHhcCCCcCCChHHHHHHHHHHhCCHhHhHhHHH
Confidence 9999999999999999999999999999987542211 111112 46677777776543
No 58
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.86 E-value=6.3e-20 Score=194.36 Aligned_cols=296 Identities=13% Similarity=0.158 Sum_probs=158.9
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 79 RILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
||+|||||+||+++|..|++. |++|+|+|+.+...... ...+....+. ......++.+....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~-----tw~~~~~~~~---~~~~~~~~~~v~~~-------- 64 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNH-----TWSFFDSDLS---DAQHAWLADLVQTD-------- 64 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcc-----cceecccccc---hhhhhhhhhhheEe--------
Confidence 799999999999999999987 99999999975211100 0111100000 00000011111110
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
+. .+.+.++.. ....+.++ ..|++.+|.+.|.++++.. ++.+++|+++ ++++|++ ++|++++|++|
T Consensus 65 --W~----~~~v~~~~~--~~~l~~~Y-~~I~r~~f~~~l~~~l~~~-i~~~~~V~~v--~~~~v~l--~dg~~~~A~~V 130 (370)
T TIGR01789 65 --WP----GYEVRFPKY--RRKLKTAY-RSMTSTRFHEGLLQAFPEG-VILGRKAVGL--DADGVDL--APGTRINARSV 130 (370)
T ss_pred --CC----CCEEECcch--hhhcCCCc-eEEEHHHHHHHHHHhhccc-EEecCEEEEE--eCCEEEE--CCCCEEEeeEE
Confidence 00 011222111 11123343 5899999999999888766 6668999988 3455554 78999999999
Q ss_pred EEecCCchhhhhhhcCCCCccccceEEEEEEe-cc-CCCCccccce---EEEecCeeEE-EEeeCCCCeEEEEEEeeCCC
Q 006025 237 IGADGIWSKVRKNLFGPQEAIYSGYTCYTGIA-DF-VPADIESVGY---RVFLGHKQYF-VSSDVGAGKMQWYAFHKEPA 310 (664)
Q Consensus 237 VgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 310 (664)
|+|||.+|.-... .++..+.|+. .. .|.+.+.... ......+..| ...|..++...|-...-.+.
T Consensus 131 I~A~G~~s~~~~~---------~~~Q~f~G~~~r~~~p~~~~~~~lMD~~~~q~~g~~F~Y~lP~~~~~~lvE~T~~s~~ 201 (370)
T TIGR01789 131 IDCRGFKPSAHLK---------GGFQVFLGREMRLQEPHGLENPIIMDATVDQLAGYRFVYVLPLGSHDLLIEDTYYADD 201 (370)
T ss_pred EECCCCCCCcccc---------ceeeEEEEEEEEEcCCCCCCccEEEeeeccCCCCceEEEECcCCCCeEEEEEEeccCC
Confidence 9999999752111 1222222221 11 1222211111 1111233333 33677777765532211110
Q ss_pred CCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccce---eeeeccc--CC-CCcccc-CCcEEEEccCcCcCCCCCccch
Q 006025 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAI---LRRDIYD--RT-PIFTWG-RGRVTLLGDSVHAMQPNLGQGG 383 (664)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~--~~-~~~~~~-~~rv~LvGDAAh~~~P~~GqG~ 383 (664)
+.-..+.+.+.+..|.... ......+ ....++. .. ....|. .++++++|||||.++|.+|||+
T Consensus 202 -----~~l~~~~l~~~l~~~~~~~-----g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~ 271 (370)
T TIGR01789 202 -----PLLDRNALSQRIDQYARAN-----GWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSL 271 (370)
T ss_pred -----CCCCHHHHHHHHHHHHHHh-----CCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccH
Confidence 1112233333333321100 1111111 1111111 00 011233 4569999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHH
Q 006025 384 CMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIH 432 (664)
Q Consensus 384 n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~ 432 (664)
+.+++||..|++.+.. + ......++..|...|+.+.....
T Consensus 272 ~~a~~~a~~la~~~~~--~-------~~~~~~~~~~~~~~~~~~~~~~~ 311 (370)
T TIGR01789 272 PVAVENADALAAQPDL--S-------SEQLAAFIDSRARRHWSKTGYYR 311 (370)
T ss_pred HHHHHHHHHHHhccCc--C-------ccchhhhhhHHHHHHHHHhHHHH
Confidence 9999999999988841 1 11234567889998887776443
No 59
>PLN02697 lycopene epsilon cyclase
Probab=99.85 E-value=9.7e-19 Score=191.12 Aligned_cols=313 Identities=14% Similarity=0.105 Sum_probs=170.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
...+||+||||||||+++|..|++.|++|+|+|+..+..... .++ ...++.+ ++.+.+... . ....
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~-------GvW---~~~l~~l--gl~~~i~~~-w-~~~~ 171 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNY-------GVW---EDEFKDL--GLEDCIEHV-W-RDTI 171 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCcc-------ccc---hhHHHhc--CcHHHHHhh-c-CCcE
Confidence 345899999999999999999999999999999853221111 122 1235555 333332211 0 1101
Q ss_pred ccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEE-EEEcCCcEE
Q 006025 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCY 231 (664)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~~g~~i 231 (664)
..++... ....+.++ ..|+|..|.+.|.+++. ...+ .+++|++++.+++++. +++.+|.++
T Consensus 172 -------------v~~~~~~-~~~~~~~Y-g~V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i 235 (529)
T PLN02697 172 -------------VYLDDDK-PIMIGRAY-GRVSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVI 235 (529)
T ss_pred -------------EEecCCc-eeeccCcc-cEEcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEE
Confidence 1111000 00112222 26899999999988763 2234 5789999988777765 456788899
Q ss_pred eccEEEEecCCchhhhhhhc-CCCCccccceEEEEEEeccCCCCccccceEEEec---------------CeeEEEEeeC
Q 006025 232 AGDLLIGADGIWSKVRKNLF-GPQEAIYSGYTCYTGIADFVPADIESVGYRVFLG---------------HKQYFVSSDV 295 (664)
Q Consensus 232 ~adlvVgADG~~S~vR~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~ 295 (664)
+|++||+|||.+|. +.+. ....+.+....++.........+.+... ..++. ...+++..|.
T Consensus 236 ~A~lVI~AdG~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~~d~~~-~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~ 312 (529)
T PLN02697 236 PCRLATVASGAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNPYDPSL-MVFMDYRDYFKEKVSHLEAEYPTFLYAMPM 312 (529)
T ss_pred ECCEEEECCCcChh--hhhccccCCCCcccEEEEEEEEEecCCCCCcch-heeeccccccccccccccCCCceEEEEeec
Confidence 99999999999993 2321 1111222222222222222211121111 11111 1134555566
Q ss_pred CCCeEEEEEE-eeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeecccCCCCccccCCcEEEEccCcCc
Q 006025 296 GAGKMQWYAF-HKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHA 374 (664)
Q Consensus 296 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~ 374 (664)
+++.+..-.. +...+ ........+.+...+.... +............++...+.+.. .++++++||||+.
T Consensus 313 ~~~~~~VE~T~l~~~~--~l~~~~l~~~L~~~l~~~G------i~~~~i~~~E~g~iPm~g~~~~~-~~~vl~vG~AAG~ 383 (529)
T PLN02697 313 SSTRVFFEETCLASKD--AMPFDLLKKRLMSRLETMG------IRILKTYEEEWSYIPVGGSLPNT-EQKNLAFGAAASM 383 (529)
T ss_pred CCCeEEEEEeeeccCC--CCCHHHHHHHHHHHHHhCC------CCcceEEEEEeeeecCCCCCccc-CCCeeEeehhhcC
Confidence 6655443111 10110 0001112222322222110 00001111111122221222233 6899999999999
Q ss_pred CCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCC---ChhhHHHHHHHHHHHhhhHHH
Q 006025 375 MQPNLGQGGCMAIEDGYQLAVELEKACKKSNESK---TPIDIVSALKSYERARRLRVA 429 (664)
Q Consensus 375 ~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g---~~~~~~~~L~~Ye~~R~~~~~ 429 (664)
+||.+|.|+..++.+|..+|+.|+++++.+...+ ........++.|++.......
T Consensus 384 vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~ 441 (529)
T PLN02697 384 VHPATGYSVVRSLSEAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERK 441 (529)
T ss_pred CCCchhhhHHHHHHhHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHH
Confidence 9999999999999999999999999987542100 012456788988887766544
No 60
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.84 E-value=3e-19 Score=193.61 Aligned_cols=321 Identities=16% Similarity=0.172 Sum_probs=171.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcC---CeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHH--HHHhccccCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKG---FEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE--VMRAGCVTGD 153 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g---~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~--~~~~~~~~~~ 153 (664)
||+|||||+||.++|..|++.+ ++|+|||+...+..+.|+ +..|....+++.+ |+.+. +.+.....+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe-----~~~p~~~~~~~~l--gi~e~~~~~~~~~~~k~ 73 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGE-----STLPSLRPFLRRL--GIDEADFMRACDATFKL 73 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEE-----E--THHHHCHHHH--T--HHHHCHHCT-EEES
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccc-----cchHHHHHHHHHc--CCChHHHHHHhCCeEec
Confidence 7999999999999999999999 999999998776666653 5677778888888 55555 4444332222
Q ss_pred ccccc-ccCCCCceeeeccCC-----------------------------------------Ccc--cccCCCeEEeeCH
Q 006025 154 RINGL-VDGISGSWYIKFDTF-----------------------------------------TPA--AEKGLPVTRVISR 189 (664)
Q Consensus 154 ~~~~~-~~~~~~~~~~~~~~~-----------------------------------------~~~--~~~~~~~~~~i~r 189 (664)
.+... +......+...|... .+. ......++|.++|
T Consensus 74 g~~f~~w~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR 153 (454)
T PF04820_consen 74 GIRFVNWGERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDR 153 (454)
T ss_dssp EEEEESSSSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEH
T ss_pred cEEeeecCCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeH
Confidence 22110 000111111111110 000 0112456899999
Q ss_pred HHHHHHHHHhcC--CceEEeCCeEEEEEeeCCe--EEEEEcCCcEEeccEEEEecCCchhhhhhhcCCCCccccc-e---
Q 006025 190 MTLQQILAKAVG--DEIILNESNVIDFKDHGDK--VSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSG-Y--- 261 (664)
Q Consensus 190 ~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~--v~v~~~~g~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~-~--- 261 (664)
..|++.|.+.+. ...++.+ +|+++..++++ ..|++.+|++++||+||+|+|.+|.+.+..+......+.. .
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~L~~d 232 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEG-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLLARKALKVGFRDWSDWLPND 232 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CCCCCCT-EEEEEETTTCEEE
T ss_pred HHHHHHHHHHHhcCCCEEEeC-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchhhHhhhcCCCcccccccccc
Confidence 999999998752 2234445 68888776555 3588889999999999999999999888742211111111 1
Q ss_pred EEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcC
Q 006025 262 TCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILAT 341 (664)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~ 341 (664)
.++........ ...... .......+|++..|..+....-+++.... ...+...+.+..+ +...
T Consensus 233 ~av~~~~~~~~-~~~~~T-~~~a~~~GW~W~IPL~~~~~~G~V~s~~~--------~s~~~A~~~l~~~-------l~~~ 295 (454)
T PF04820_consen 233 RAVAVQVPNED-PPEPYT-RSTAFEAGWIWYIPLQNRRGSGYVYSSDF--------ISDDEAEAELLAY-------LGGS 295 (454)
T ss_dssp EEEEEEEE-SS-CTTSSE-EEEEESSEEEEEEEESSEEEEEEEEETTT--------SHHHHHHHHHHHH-------HTCH
T ss_pred EEEEEecCcCC-CCCCce-eEEecCCceEEEccCCCcceEEEEecccc--------CCHHHHHHHHHHh-------cchh
Confidence 12221111111 111111 22333556777777777655423332211 1112222112111 1110
Q ss_pred CccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHH
Q 006025 342 DEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYE 421 (664)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye 421 (664)
.........+.. ....+...+|+++|||||++++|+.++|+.+++..+..|++.|... ..+ +.+++.|+
T Consensus 296 ~~~~~~~i~~~~-g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~~~---------~~~-~~~~~~Yn 364 (454)
T PF04820_consen 296 PEAEPRHIRFRS-GRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALPDD---------DFS-PAALDRYN 364 (454)
T ss_dssp CTTSCEEEE-S--EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHHCT---------TCC-HHHHHHHH
T ss_pred hhcchhhhcccc-cchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcccC---------CCC-HHHHHHHH
Confidence 000000001110 1123445678999999999999999999999999888877777542 112 56889999
Q ss_pred HHhhhHHHHHHHhH
Q 006025 422 RARRLRVAVIHGLA 435 (664)
Q Consensus 422 ~~R~~~~~~~~~~s 435 (664)
+..+.....+.++-
T Consensus 365 ~~~~~~~~~~~~fi 378 (454)
T PF04820_consen 365 RRMRREYERIRDFI 378 (454)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 98888877655443
No 61
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.73 E-value=1.3e-15 Score=162.31 Aligned_cols=278 Identities=18% Similarity=0.206 Sum_probs=151.5
Q ss_pred cEEEECCCHHHHHHHHHH--HHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 79 RILVAGGGIGGLVFALAA--KRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l--~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
||+||||||||+++|..| ++.|.+|+|+|+++...... .+ ....... .+ +..+.+..... ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~-~~--tW~~~~~------~~--~~~~~~v~~~w-~~---- 64 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPN-DR--TWCFWEK------DL--GPLDSLVSHRW-SG---- 64 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccC-Cc--ccccccc------cc--cchHHHHheec-Cc----
Confidence 899999999999999999 88899999999875431110 00 0001100 11 11222222211 11
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC-CceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG-DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~-~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adl 235 (664)
+.+.++..... ...++ +.+|++..|++.|.+++. ..+++.+.+|++++.+++.+.|++++|++++|++
T Consensus 65 ---------~~v~~~~~~~~-~~~~~-Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~ 133 (374)
T PF05834_consen 65 ---------WRVYFPDGSRI-LIDYP-YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARV 133 (374)
T ss_pred ---------eEEEeCCCceE-Ecccc-eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeE
Confidence 11111111100 01123 258999999999999875 2346778999999999998999999999999999
Q ss_pred EEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCccccce-EEEec----CeeEEEEeeCCCCeEEEEEEeeCCC
Q 006025 236 LIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGY-RVFLG----HKQYFVSSDVGAGKMQWYAFHKEPA 310 (664)
Q Consensus 236 vVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (664)
||+|+|..|...+.. -+.....+.........+.+...+ .+... .-.+++..|.+.+....-...-.+.
T Consensus 134 VvDa~g~~~~~~~~~------~~Q~f~G~~v~~~~~~f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~ 207 (374)
T PF05834_consen 134 VVDARGPSSPKARPL------GLQHFYGWEVETDEPVFDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPR 207 (374)
T ss_pred EEECCCccccccccc------ccceeEEEEEeccCCCCCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCC
Confidence 999999777622211 111112222111111111111111 11111 1234555576666543311111110
Q ss_pred CCCCCCcchHHHHHHHHhCCChhHHHHHHcCCcccee---eeeccc-CCCCccccCCcEEEEccCcCcCCCCCccchhHH
Q 006025 311 GGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAIL---RRDIYD-RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMA 386 (664)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~-~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~a 386 (664)
+.-..+.+.+.+..+... ......++. ...++. ..+...-..++++.+|+||+.++|.+|.++-.+
T Consensus 208 -----~~~~~~~~~~~l~~~l~~-----~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~ 277 (374)
T PF05834_consen 208 -----PALPEEELKARLRRYLER-----LGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARI 277 (374)
T ss_pred -----CCCCHHHHHHHHHHHHHH-----cCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHH
Confidence 101122333322222111 011111111 111222 022223346779999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006025 387 IEDGYQLAVELEK 399 (664)
Q Consensus 387 l~Da~~La~~L~~ 399 (664)
++.|..+|+.|.+
T Consensus 278 ~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 278 QRQADAIADALAK 290 (374)
T ss_pred HHHHHHHHHHHhh
Confidence 9999988888876
No 62
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=99.70 E-value=4.8e-17 Score=128.15 Aligned_cols=67 Identities=39% Similarity=0.724 Sum_probs=62.7
Q ss_pred EEecCCCCCCCCcceeEeCCCcccccceEEEEECC-EEEEEECCCCceeEEeCCCCceeecCCCCcEEeCCCCEEEEC
Q 006025 556 YLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG-AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 632 (664)
Q Consensus 556 ~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~-~~~~~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~g 632 (664)
++|||++. ||++++++.|||+||.|.++++ .|+|+|++|+||||||+. ++.++++++|++||+|+||
T Consensus 1 ~~iGR~~~-----~di~l~~~~iSr~Ha~i~~~~~~~~~i~d~~s~ngt~vng~-----~l~~~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 1 VTIGRSPD-----CDIVLPDPSISRRHARISFDDDGQFYIEDLGSTNGTFVNGQ-----RLGPGEPVPLKDGDIIRFG 68 (68)
T ss_dssp EEEESSTT-----SSEEETSTTSSTTSEEEEEETTEEEEEEESSSSS-EEETTE-----EESSTSEEEE-TTEEEEET
T ss_pred CEEcCCCC-----CCEEECCHheeeeeeEEEEeceeeEEEEeCCCCCcEEECCE-----EcCCCCEEECCCCCEEEcC
Confidence 58999988 9999999999999999999988 999999999999999999 9999999999999999998
No 63
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.68 E-value=2.7e-15 Score=147.02 Aligned_cols=217 Identities=20% Similarity=0.128 Sum_probs=129.3
Q ss_pred eccEEEEecCCchhhhhhhcCCCCccccceEEEEEEeccCCCCccccceEEEecCeeEEEEeeCCCCeEEEEEEeeCCCC
Q 006025 232 AGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAG 311 (664)
Q Consensus 232 ~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (664)
.|+++|.|||..|.+|+.+. ...+.. ...+.|+.-....-.....-+.++++...++.++++....+..+-+..+.-
T Consensus 1 ~A~LtivaDG~~S~fRk~l~-~~~~~v--~S~fvGl~l~~~~lp~~~~ghvil~~~~pil~YqI~~~etR~Lvdvp~~k~ 77 (276)
T PF08491_consen 1 FAPLTIVADGCFSKFRKELS-DNKPQV--RSYFVGLILKDAPLPKPNHGHVILGKPGPILLYQISSNETRVLVDVPGPKL 77 (276)
T ss_pred CCCEEEEecCCchHHHHhhc-CCCCce--eeeEEEEEEcCCCCCCCCceEEEEcCCCcEEEEEcCCCceEEEEEeCCCcc
Confidence 37899999999999999985 222222 233444422111111122235566666778888998888877765543311
Q ss_pred CCCCCcchHHHHHHHHhCC-ChhHHHHHH-cCCccceeeeecccCCCCccccCCcEEEEccCcCcCCCCCccchhHHHHH
Q 006025 312 GVDGPEGKKERLLKIFEGW-CDNVVDLIL-ATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIED 389 (664)
Q Consensus 312 ~~~~~~~~~~~l~~~~~~~-~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~D 389 (664)
......+..+.+.+..... .+.+.+.+. ......+...+... .+.......+++++|||++..||++|+||+.|+.|
T Consensus 78 P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~rirsMPn~~-lp~~~~~~~G~vllGDA~nmrHPLTGgGMTVAl~D 156 (276)
T PF08491_consen 78 PSVSNGELKEYLREVVAPQLPEELRPSFEKALEDGRIRSMPNSF-LPASPNWKPGVVLLGDAANMRHPLTGGGMTVALND 156 (276)
T ss_pred CCccchHHHHHHHHHHHhhchHHHHHHHHHHhccCCcceecccc-cCCCCCCCCCEEEEehhhcCcCCccccchhhHHHH
Confidence 1111112233343333322 223333222 22222332222222 23333445789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHhhhHHHHHHHhHHHHHHHHHHhhhhhccCCCcccceeeec
Q 006025 390 GYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFR 463 (664)
Q Consensus 390 a~~La~~L~~~~~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 463 (664)
+..|++.|...- +-.......++++.|..+|++....+.-++. . +..+|..+...++.+|+-.
T Consensus 157 v~lL~~lL~~~~----dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~------a-LY~lF~a~~~~l~~Lr~gc 219 (276)
T PF08491_consen 157 VVLLRDLLSPIP----DLSDTKAVLEALKKFHWKRKPLSSVINILAQ------A-LYSLFAADDDYLKALRQGC 219 (276)
T ss_pred HHHHHHHHhhhc----CcccHHHHHHHHHHHHHHHccchHHHHHHHH------H-HHHHHhCCCHHHHHHHHHH
Confidence 999999998761 1123456788999999999999876655443 2 3345555544455555533
No 64
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=99.42 E-value=1.6e-12 Score=111.32 Aligned_cols=96 Identities=38% Similarity=0.581 Sum_probs=80.2
Q ss_pred EEEEecCCCCCCCCCeEEeeccCC-CCEEecCCCCCCCCcc-eeEeCCCcccccceEEEEEC-CEEEEEECCCCceeEEe
Q 006025 530 WFLVPSGSENVVSQPIYLSVSHEN-EPYLIGSESHEDFSRT-SIVIPSAQVSKMHARISYKD-GAFYLIDLQSEHGTYVT 606 (664)
Q Consensus 530 ~~l~~~~~~~~~~~~~~l~~~~~~-~~~~iGR~~~~~~~~~-~i~~~~~~vSr~Ha~i~~~~-~~~~~~Dl~S~nGt~vn 606 (664)
|.|....+. ...+.+.|. . ..++|||++. | ++.+++..|||.||.|.++. +.+++.|+.|+||||||
T Consensus 2 ~~L~~~~~~-~~~~~~~l~----~~~~~~iGr~~~-----~~~i~l~~~~iS~~H~~i~~~~~~~~~~~~~~s~~g~~vn 71 (102)
T cd00060 2 PRLVVLSGD-ASGRRYYLD----PGGTYTIGRDSD-----NCDIVLDDPSVSRRHAVIRYDGDGGVVLIDLGSTNGTFVN 71 (102)
T ss_pred eEEEEecCC-CceeEEEEC----CCCeEEECcCCC-----cCCEEcCCCCeeCcceEEEEcCCCCEEEEECCCCCCeEEC
Confidence 445555443 333667777 6 8999999999 7 99999999999999999997 89999999999999999
Q ss_pred CCCCceeecCCCCcEEeCCCCEEEECCCceeEEEE
Q 006025 607 DNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRV 641 (664)
Q Consensus 607 ~~~~~~~~l~~~~~~~l~~gd~i~~g~~~~~~~~~ 641 (664)
+. ++..+.++.|.+||.|.||..... |++
T Consensus 72 ~~-----~~~~~~~~~l~~gd~i~ig~~~~~-~~~ 100 (102)
T cd00060 72 GQ-----RVSPGEPVRLRDGDVIRLGNTSIS-FRF 100 (102)
T ss_pred CE-----ECCCCCcEECCCCCEEEECCeEEE-EEE
Confidence 99 888888899999999999974333 544
No 65
>TIGR03354 VI_FHA type VI secretion system FHA domain protein. Members of this protein family are FHA (forkhead-associated) domain-containing proteins that are part of type VI secretion loci in a considerable number of bacteria, most of which are known pathogens. Species include Pseudomonas aeruginosa PAO1, Aeromonas hydrophila, Yersinia pestis, Burkholderia mallei, etc.
Probab=99.38 E-value=1.8e-12 Score=136.62 Aligned_cols=80 Identities=29% Similarity=0.515 Sum_probs=73.1
Q ss_pred CCeEEeeccCCCCEEecCCCCCCCCcceeEeCCCc--ccccceEEEEECCEEEEEECCCCceeEEe--CCCCceeecCCC
Q 006025 543 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQ--VSKMHARISYKDGAFYLIDLQSEHGTYVT--DNEGRRYRVSSN 618 (664)
Q Consensus 543 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~--vSr~Ha~i~~~~~~~~~~Dl~S~nGt~vn--~~~~~~~~l~~~ 618 (664)
..+.+. +..++|||+++ |+++|+++. ||+.||+|.++++.|+|+|+ |+|||||| +. ++.++
T Consensus 17 ~~~~f~----~~~~~IGR~~~-----~d~~l~d~~~~VS~~Ha~I~~~~g~~~l~Dl-StNGT~VN~sg~-----~l~~~ 81 (396)
T TIGR03354 17 AQKTFG----TNGGTIGRSED-----CDWVLPDPERHVSGRHARIRYRDGAYLLTDL-STNGVFLNGSGS-----PLGRG 81 (396)
T ss_pred eEEEEC----CCCEEEecCCC-----CCEEeCCCCCCcchhhcEEEEECCEEEEEEC-CCCCeEECCCCC-----CCCCC
Confidence 567777 88999999999 999999988 99999999999999999998 99999999 77 88888
Q ss_pred CcEEeCCCCEEEECCCcee
Q 006025 619 FPARFRPSDTIEFGSDKKA 637 (664)
Q Consensus 619 ~~~~l~~gd~i~~g~~~~~ 637 (664)
.++.|.+||+|+||+..+.
T Consensus 82 ~~~~L~~GD~I~iG~~~lr 100 (396)
T TIGR03354 82 NPVRLEQGDRLRLGDYEIR 100 (396)
T ss_pred CceEcCCCCEEEECCEEEE
Confidence 8899999999999997433
No 66
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=99.27 E-value=3.6e-12 Score=118.09 Aligned_cols=99 Identities=28% Similarity=0.459 Sum_probs=80.2
Q ss_pred cCCcEEEEecCCCCCCCCCeEEeeccCCCCEEecCCCCCCCCcceeEeCCCcccccceEEEEEC------C-------EE
Q 006025 526 MNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKD------G-------AF 592 (664)
Q Consensus 526 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~------~-------~~ 592 (664)
+..+|-|.+...+... .+..+- -+..+++||...- +||.+++++.|++||.|.+.. + ..
T Consensus 170 P~kRwrLy~fk~~e~l-~~l~iH---rqs~yL~gRerkI----aDi~idhpScSKQHaviQyR~v~~~r~dGt~grrvkp 241 (293)
T KOG1882|consen 170 PKKRWRLYPFKCYEVL-PVLYIH---RQSCYLDGRERKI----ADIPIDHPSCSKQHAVIQYRLVEFTRADGTVGRRVKP 241 (293)
T ss_pred chhheecccccCCccc-chheee---eeeeeecCceeee----eccCCCCccccccceeeeeeecccccCCCccceeeee
Confidence 5567999999766543 344443 2568999996553 999999999999999998741 2 37
Q ss_pred EEEECCCCceeEEeCCCCceeecCCCCcEEeCCCCEEEECCCcee
Q 006025 593 YLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKA 637 (664)
Q Consensus 593 ~~~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~g~~~~~ 637 (664)
||+||+|+||||||.. +|.|...++|..+|+|.||-....
T Consensus 242 YiiDLgS~NgTfLNnk-----~IepqRYyEL~ekDvlkfgfs~rE 281 (293)
T KOG1882|consen 242 YIIDLGSGNGTFLNNK-----VIEPQRYYELREKDVLKFGFSSRE 281 (293)
T ss_pred EEEecCCCCcceecCc-----ccCchheeeeecCceeeeccchHH
Confidence 8999999999999999 999999999999999999965433
No 67
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.26 E-value=5.2e-11 Score=119.41 Aligned_cols=136 Identities=27% Similarity=0.350 Sum_probs=87.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccc-----eeeCchHHHHHHhcChhHHHHHHHhccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-----IQIQSNALAALEAIDLDVAEEVMRAGCV 150 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~-----~~l~~~~~~~L~~l~~g~~~~~~~~~~~ 150 (664)
..+||+||||||+|+++|+.|++.|++|+|+|+...+.. +...++ +.+......+|+.+ +.
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Gg--g~~~gg~~~~~~~v~~~~~~~l~~~-----------gv- 89 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG--GMWGGGMLFNKIVVQEEADEILDEF-----------GI- 89 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCC--ccccCccccccccchHHHHHHHHHC-----------CC-
Confidence 458999999999999999999999999999999764321 111111 11111112222222 10
Q ss_pred cCccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCC-eEE-EEEc
Q 006025 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGD-KVS-VVLE 226 (664)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~-~v~-v~~~ 226 (664)
.. .. . ..+ .+.+++..+...|.+.+. ...++.+++|+++..+++ .+. +...
T Consensus 90 ---~~---~~---------~-------~~g---~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~ 144 (257)
T PRK04176 90 ---RY---KE---------V-------EDG---LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVIN 144 (257)
T ss_pred ---Cc---ee---------e-------cCc---ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEc
Confidence 00 00 0 001 246778888888887652 235788999999986555 332 2211
Q ss_pred -----------CCcEEeccEEEEecCCchhhhhhh
Q 006025 227 -----------NGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 227 -----------~g~~i~adlvVgADG~~S~vR~~l 250 (664)
+..+++|++||.|+|.+|.+.+.+
T Consensus 145 ~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l 179 (257)
T PRK04176 145 WTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVL 179 (257)
T ss_pred cccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHH
Confidence 225799999999999999999988
No 68
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.24 E-value=2.4e-11 Score=123.72 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=92.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCccc-ceeeCc--hHHHHHHhcC---hhHHHHHHHhcc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRG-PIQIQS--NALAALEAID---LDVAEEVMRAGC 149 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~-~~~l~~--~~~~~L~~l~---~g~~~~~~~~~~ 149 (664)
+.+||+|||||||||++|..++++|++|+|||+.+...+..--.++ +..++. ..-+++.+.+ .-+...+.+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~--- 78 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALAR--- 78 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHh---
Confidence 4689999999999999999999999999999998754322110111 111111 1222333331 001111100
Q ss_pred ccCccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcC
Q 006025 150 VTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLEN 227 (664)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~ 227 (664)
+....+..+.....-.+ . ....|.-+.....-..+.++|+.++. ...++.+++|.+++.++.+..+.+.+
T Consensus 79 ft~~d~i~~~e~~Gi~~-~-------e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~ 150 (408)
T COG2081 79 FTPEDFIDWVEGLGIAL-K-------EEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSS 150 (408)
T ss_pred CCHHHHHHHHHhcCCee-E-------EccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCC
Confidence 00111111111110000 0 01112111111233456666666653 34588999999999998889999999
Q ss_pred CcEEeccEEEEecCCchh
Q 006025 228 GQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 228 g~~i~adlvVgADG~~S~ 245 (664)
|++++||-||.|.|..|.
T Consensus 151 g~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 151 GETVKCDSLILATGGKSW 168 (408)
T ss_pred CCEEEccEEEEecCCcCC
Confidence 999999999999998875
No 69
>COG1716 FOG: FHA domain [Signal transduction mechanisms]
Probab=99.20 E-value=5.2e-11 Score=114.67 Aligned_cols=72 Identities=28% Similarity=0.453 Sum_probs=66.3
Q ss_pred CCCEEecCCCCCCCCcceeEeCCCcccccceEEEEECCEEEEEECCCCceeEEeCCCCceeecCCCCcEEeCCCCEEEEC
Q 006025 553 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFG 632 (664)
Q Consensus 553 ~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~~~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~g 632 (664)
...++|||+++ +++++++..|||+||.|.++++.++++|++|+||||||+. ++.. .+.|.+||.|+||
T Consensus 88 ~~~~tigr~~~-----~~i~~~~~~vSR~Ha~l~~~~~~~~~~d~~S~nGt~vn~~-----~v~~--~~~l~~gd~i~i~ 155 (191)
T COG1716 88 EPVTTIGRDPD-----NDIVLDDDVVSRRHAELRREGNEVFLEDLGSTNGTYVNGE-----KVRQ--RVLLQDGDVIRLG 155 (191)
T ss_pred cceEEeccCCC-----CCEEcCCCccccceEEEEEeCCceEEEECCCCcceEECCe-----EccC--cEEcCCCCEEEEC
Confidence 45799999888 9999999999999999999999999999999999999999 7764 5789999999999
Q ss_pred CCce
Q 006025 633 SDKK 636 (664)
Q Consensus 633 ~~~~ 636 (664)
....
T Consensus 156 ~~~~ 159 (191)
T COG1716 156 GTLA 159 (191)
T ss_pred ccce
Confidence 9765
No 70
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.20 E-value=2.2e-10 Score=114.58 Aligned_cols=136 Identities=21% Similarity=0.333 Sum_probs=86.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccce-----eeCchHHHHHHhcChhHHHHHHHhccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPI-----QIQSNALAALEAIDLDVAEEVMRAGCV 150 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~-----~l~~~~~~~L~~l~~g~~~~~~~~~~~ 150 (664)
..+||+||||||+|+++|+.|+++|++|+|+||...... +...++. .+......+++.+ +.
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Gg--g~~~gg~~~~~~~~~~~~~~~l~~~-----------gi- 85 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGG--GSWGGGMLFSKIVVEKPAHEILDEF-----------GI- 85 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc--cccCCCcceecccccchHHHHHHHC-----------CC-
Confidence 468999999999999999999999999999999864321 1111111 0111111111111 00
Q ss_pred cCccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCC--eEE-EEE
Q 006025 151 TGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGD--KVS-VVL 225 (664)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~--~v~-v~~ 225 (664)
.+. ..+.. .+..++..+.+.|.+++. ...++.+++|.++..+++ .+. |..
T Consensus 86 ------------------~~~------~~~~g-~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~ 140 (254)
T TIGR00292 86 ------------------RYE------DEGDG-YVVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVI 140 (254)
T ss_pred ------------------Cee------eccCc-eEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEe
Confidence 000 00111 134577888888877652 235788999999987666 232 222
Q ss_pred c-----------CCcEEeccEEEEecCCchhhhhhh
Q 006025 226 E-----------NGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 226 ~-----------~g~~i~adlvVgADG~~S~vR~~l 250 (664)
. +..+++|++||+|+|..|.+.+.+
T Consensus 141 ~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 141 NWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred CCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 2 234799999999999999999887
No 71
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.17 E-value=4.3e-09 Score=120.81 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=50.9
Q ss_pred EeeCHHHHHHHHHHhcCC-ceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchh
Q 006025 185 RVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 185 ~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~ 245 (664)
..++...+.+.|.+.+.. ..++++++|++++.+++++.|.+.+|..++||.||.|+|.+|.
T Consensus 403 G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 403 GWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred CeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCcc
Confidence 457788888888887653 3577899999999888889888888888899999999999985
No 72
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.15 E-value=2.6e-09 Score=113.31 Aligned_cols=63 Identities=27% Similarity=0.326 Sum_probs=50.3
Q ss_pred eEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEE-EEEcCCcEEeccEEEEecCCchhh
Q 006025 183 VTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSKV 246 (664)
Q Consensus 183 ~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~~g~~i~adlvVgADG~~S~v 246 (664)
....++-..+.+.|.+.+. ...++.+++|++++.++++|+ |.+.+|+ ++||.||.|.|.+|.-
T Consensus 140 ~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 140 EGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp TEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE-EEECEEEE--GGGHHH
T ss_pred ccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc-cccceeEeccccccee
Confidence 3556788888888877652 245888999999999999998 9999997 9999999999998854
No 73
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.14 E-value=1.1e-08 Score=110.91 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=42.4
Q ss_pred eCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCC-----cEEeccEEEEecCCchh
Q 006025 187 ISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG-----QCYAGDLLIGADGIWSK 245 (664)
Q Consensus 187 i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g-----~~i~adlvVgADG~~S~ 245 (664)
++-..+...|.+.+. ...++.+++|++++.+++.+++.+.++ .+++||.||.|.|.+|.
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~ 259 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR 259 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence 344455555555542 235778899999998888877765443 37999999999999975
No 74
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.13 E-value=1.5e-08 Score=108.68 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=44.2
Q ss_pred eeCHHHHHHHHHHhc--CCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchh
Q 006025 186 VISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 186 ~i~r~~l~~~L~~~~--~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~ 245 (664)
.++...+...+.+.+ ....++.+++|++++.+++++.|+.++| ++++|.||.|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADG-TYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCC-EEEeeEEEEecCcchh
Confidence 455555555554443 2235778899999998888888888777 7999999999999864
No 75
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.12 E-value=1.2e-08 Score=109.55 Aligned_cols=65 Identities=20% Similarity=0.323 Sum_probs=49.0
Q ss_pred EeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCc-hhhhhhh
Q 006025 185 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIW-SKVRKNL 250 (664)
Q Consensus 185 ~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~-S~vR~~l 250 (664)
..++...+.+.|.+.+. ...++.+++|++++.+++.+.|++.++ ++++|.||.|.|.+ |.+++.+
T Consensus 140 g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~-~i~a~~vV~aaG~~~~~l~~~~ 207 (380)
T TIGR01377 140 GVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG-SYQANKLVVTAGAWTSKLLSPL 207 (380)
T ss_pred cEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC-EEEeCEEEEecCcchHHHhhhc
Confidence 46677788787766542 234778899999998888888877666 79999888888875 6677765
No 76
>smart00240 FHA Forkhead associated domain. Found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain.
Probab=99.12 E-value=8e-11 Score=87.08 Aligned_cols=48 Identities=44% Similarity=0.771 Sum_probs=44.6
Q ss_pred EEecCCC-CCCCCcceeEeCCCcccccceEEEEECCE-EEEEECCCCceeEEeCC
Q 006025 556 YLIGSES-HEDFSRTSIVIPSAQVSKMHARISYKDGA-FYLIDLQSEHGTYVTDN 608 (664)
Q Consensus 556 ~~iGR~~-~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~-~~~~Dl~S~nGt~vn~~ 608 (664)
++|||++ . |+++++++.|||.||+|.++.+. |+|+|++|+||||||++
T Consensus 1 ~~iGr~~~~-----~~i~~~~~~vs~~H~~i~~~~~~~~~i~d~~s~~gt~vng~ 50 (52)
T smart00240 1 VTIGRSSED-----CDIQLPGPSISRRHAEIVYDGGGRFYLIDLGSTNGTFVNGK 50 (52)
T ss_pred CEeCCCCCC-----CCEEeCCCCcchhHcEEEECCCCeEEEEECCCCCCeeECCE
Confidence 4799999 6 99999999999999999999665 99999999999999997
No 77
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.10 E-value=6.8e-10 Score=104.34 Aligned_cols=138 Identities=22% Similarity=0.292 Sum_probs=82.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccC---CCCcccceeeCchHHHHHHhcChhHHHHHHHhccccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG---EGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTG 152 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~---~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~ 152 (664)
..+||+||||||+||++|+.|++.|++|.|+|++..+..+ .|.....+.++..+..+|+.+ ++.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~el--gi~----------- 82 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDEL--GIP----------- 82 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHH--T-------------
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhC--Cce-----------
Confidence 3589999999999999999999999999999998654211 111111245666677777766 220
Q ss_pred ccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhc-C-CceEEeCCeEEEEEeeC-CeEE---EEEc
Q 006025 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-G-DEIILNESNVIDFKDHG-DKVS---VVLE 226 (664)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-~-~~~i~~~~~v~~v~~~~-~~v~---v~~~ 226 (664)
. .+ .+ +..++.+-.++...|..++ . ...++....|.++...+ ++|. +..+
T Consensus 83 --y---~~------------------~~-~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt 138 (230)
T PF01946_consen 83 --Y---EE------------------YG-DGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWT 138 (230)
T ss_dssp ------EE-------------------S-SEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEH
T ss_pred --e---EE------------------eC-CeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEeh
Confidence 0 00 00 1135566777777776553 3 23577788899987666 5543 2221
Q ss_pred ---------CCcEEeccEEEEecCCchhhhhhh
Q 006025 227 ---------NGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 227 ---------~g~~i~adlvVgADG~~S~vR~~l 250 (664)
|.-+++|++||+|+|..+.+-+.+
T Consensus 139 ~V~~~glHvDPl~i~ak~ViDaTGHda~v~~~~ 171 (230)
T PF01946_consen 139 PVEMAGLHVDPLTIRAKVVIDATGHDAEVVRVL 171 (230)
T ss_dssp HHHTT--T-B-EEEEESEEEE---SSSSSTSHH
T ss_pred HHhHhhcCCCcceEEEeEEEeCCCCchHHHHHH
Confidence 224799999999999988765554
No 78
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.07 E-value=1.8e-09 Score=100.70 Aligned_cols=135 Identities=24% Similarity=0.323 Sum_probs=88.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccc-----eeeCchHHHHHHhcChhHHHHHHHhcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-----IQIQSNALAALEAIDLDVAEEVMRAGCVT 151 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~-----~~l~~~~~~~L~~l~~g~~~~~~~~~~~~ 151 (664)
..||+||||||+||++|+.||++|++|+|+||+-.+ +.|...++ +.+...+.++|+.++ +.-+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~--GGG~w~GGmlf~~iVv~~~a~~iL~e~g--I~ye-------- 97 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF--GGGIWGGGMLFNKIVVREEADEILDEFG--IRYE-------- 97 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeeccc--CCcccccccccceeeecchHHHHHHHhC--Ccce--------
Confidence 469999999999999999999999999999997543 22322222 335555555665552 1000
Q ss_pred CccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhc-CC-ceEEeCCeEEEEEeeCC-eEE---EEE
Q 006025 152 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV-GD-EIILNESNVIDFKDHGD-KVS---VVL 225 (664)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~-~~-~~i~~~~~v~~v~~~~~-~v~---v~~ 225 (664)
+ .+ +..++.+-..+...|..++ .. ..++.+..|.++...++ +|. +..
T Consensus 98 --------~----------------~e---~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNW 150 (262)
T COG1635 98 --------E----------------EE---DGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNW 150 (262)
T ss_pred --------e----------------cC---CceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEec
Confidence 0 00 1124556667776666553 11 34667888888876665 433 211
Q ss_pred c---------CCcEEeccEEEEecCCchhhhhhh
Q 006025 226 E---------NGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 226 ~---------~g~~i~adlvVgADG~~S~vR~~l 250 (664)
. |.-+++|++||+|.|..-.|-+.+
T Consensus 151 t~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~ 184 (262)
T COG1635 151 TPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFL 184 (262)
T ss_pred chhhhcccccCcceeeEEEEEeCCCCchHHHHHH
Confidence 1 334799999999999988887766
No 79
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=99.02 E-value=6.9e-10 Score=112.68 Aligned_cols=79 Identities=33% Similarity=0.430 Sum_probs=69.4
Q ss_pred CCCEEecCCCCCCCCcceeEeCCC--cccccceEEEEECCEEEEEECCCCceeEEeCCCCceeecCCCCc-EEeCCCCEE
Q 006025 553 NEPYLIGSESHEDFSRTSIVIPSA--QVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP-ARFRPSDTI 629 (664)
Q Consensus 553 ~~~~~iGR~~~~~~~~~~i~~~~~--~vSr~Ha~i~~~~~~~~~~Dl~S~nGt~vn~~~~~~~~l~~~~~-~~l~~gd~i 629 (664)
....+|||+++ ||-.|+|+ .||++||+|.+++|.|+|+|. |.|||||||. .+..|.. ++|+.||+|
T Consensus 25 ~~~g~IGrs~d-----cdW~i~D~~~~VS~~Hc~I~~~dg~f~L~Dt-S~g~l~VNgs-----~~~~g~~~~RLqqGd~i 93 (430)
T COG3456 25 RGGGVIGRSPD-----CDWQIDDPERFVSKQHCTISYRDGGFCLTDT-SNGGLLVNGS-----DLPLGEGSARLQQGDEI 93 (430)
T ss_pred cCCcccccCCC-----CCccccCcccccchhheEEEecCCeEEEEec-CCCceeeccc-----ccCCCCCccccccCCEE
Confidence 77889999999 77788665 799999999999999999996 7999999998 8878877 999999999
Q ss_pred EECCCceeEEEEEEec
Q 006025 630 EFGSDKKAIFRVKVIG 645 (664)
Q Consensus 630 ~~g~~~~~~~~~~~~~ 645 (664)
+||+- +|+|.+.+
T Consensus 94 ~iG~y---~i~V~l~~ 106 (430)
T COG3456 94 LIGRY---IIRVHLSR 106 (430)
T ss_pred eeccE---EEEEEecc
Confidence 99996 46676653
No 80
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.02 E-value=3.8e-08 Score=99.69 Aligned_cols=326 Identities=17% Similarity=0.122 Sum_probs=160.6
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHc------CCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHH-
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRK------GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMR- 146 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~------g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~- 146 (664)
....+||+|||||||||++|+.|.+. .++|.|+||...... ..-.+-.+.|.++.. |- .-|.+.-.
T Consensus 73 ~~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gg---htlSGaviep~aldE---L~-P~wke~~ap 145 (621)
T KOG2415|consen 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGG---HTLSGAVIEPGALDE---LL-PDWKEDGAP 145 (621)
T ss_pred hhccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCC---ceecceeeccchhhh---hC-cchhhcCCc
Confidence 34568999999999999999999763 579999999754311 000012244544432 21 11111100
Q ss_pred -hccccCccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCe-E-
Q 006025 147 -AGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDK-V- 221 (664)
Q Consensus 147 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~-v- 221 (664)
....+.+.+.. ..+.+.+..+...+....| .|+++-..|.++|-+++.+ ..|.-+..+..+-.++++ |
T Consensus 146 l~t~vT~d~~~f----Lt~~~~i~vPv~~pm~NhG---NYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVk 218 (621)
T KOG2415|consen 146 LNTPVTSDKFKF----LTGKGRISVPVPSPMDNHG---NYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVK 218 (621)
T ss_pred ccccccccceee----eccCceeecCCCcccccCC---cEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEe
Confidence 00112222221 1122233333222222222 4788889999999776532 124444444444333222 2
Q ss_pred ---------------EEEEcCCcEEeccEEEEecCCchhhhhhhc---CCCC----ccccceEEEEEEeccCCCCcccc-
Q 006025 222 ---------------SVVLENGQCYAGDLLIGADGIWSKVRKNLF---GPQE----AIYSGYTCYTGIADFVPADIESV- 278 (664)
Q Consensus 222 ---------------~v~~~~g~~i~adlvVgADG~~S~vR~~l~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~- 278 (664)
.-+|+.|-.+.|+..|-|.|.+..+.++++ .... ..|. ..+..+....+......
T Consensus 219 GiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYg--lGlKEvWei~~~~~~pG~ 296 (621)
T KOG2415|consen 219 GIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYG--LGLKEVWEIDPENHNPGE 296 (621)
T ss_pred eEeeccccccCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceec--cccceeEecChhhcCCcc
Confidence 122334457899999999999999888873 2211 1121 11111112222222211
Q ss_pred -----ceEEEecCeeEEEEeeCCCCeEEE--EEEeeCCCCCCCCCcchHHHHHHHHhCCChhHHHHHHcCCccceeeeec
Q 006025 279 -----GYRVFLGHKQYFVSSDVGAGKMQW--YAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDI 351 (664)
Q Consensus 279 -----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 351 (664)
+|.+-...-+.-+.+..++..+.. ++....... --....+++++ + .+|.+.+.+........-.+.+
T Consensus 297 v~HT~GwPl~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP----~lsP~~EFQk~-K-~hP~i~~vleGgk~i~YgARaL 370 (621)
T KOG2415|consen 297 VAHTLGWPLDNDTYGGSFLYHFNDPLVAVGLVVGLDYKNP----YLSPYKEFQKM-K-HHPSISKVLEGGKRIAYGARAL 370 (621)
T ss_pred eeeeccCcccCCccCceeEEEcCCCeEEEEEEEEecCCCC----CCCHHHHHHHh-h-cCcchhhhhcCcceeeehhhhh
Confidence 111111111111222333333322 222211110 11112222221 1 2445555554333222221111
Q ss_pred cc--CCCCccccCCcEEEEccCcCcCCCCCccchhHHHHHHHHHHHHHHHHhhhcCCCCChhhHHHH--HHHHHHHhhh
Q 006025 352 YD--RTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSA--LKSYERARRL 426 (664)
Q Consensus 352 ~~--~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~g~~~~~~~~--L~~Ye~~R~~ 426 (664)
.. ....+..+-.+=+|||=+|++++----.|..+||.++..+|+.+-+++++... .-... +..|++.-+.
T Consensus 371 NEGGfQsiPkl~FPGG~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~-----~k~~~~~~~~Ye~nlkd 444 (621)
T KOG2415|consen 371 NEGGFQSIPKLVFPGGALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQ-----SKMAGLDPTTYEENLKD 444 (621)
T ss_pred ccCCcccCcccccCCceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCcc-----ccccccChhhHHHhhhh
Confidence 11 11122344566789999999999888899999999999999999999875410 00111 4588876553
No 81
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.98 E-value=1.2e-07 Score=105.14 Aligned_cols=174 Identities=23% Similarity=0.294 Sum_probs=92.6
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHH-------HHH
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEE-------VMR 146 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~-------~~~ 146 (664)
+...+||+|||||++|+++|+.|+++|++|+|+||..... |.......+-..+.+.++.....+..+ +..
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~---GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~ 79 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQ---GTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLA 79 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCC---CCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999985322 211111122233344444332222211 111
Q ss_pred hccccCccccc-cc------------------cCC------CCceeeeccCC---Ccc-cc--cCC-CeEEeeCHHHHHH
Q 006025 147 AGCVTGDRING-LV------------------DGI------SGSWYIKFDTF---TPA-AE--KGL-PVTRVISRMTLQQ 194 (664)
Q Consensus 147 ~~~~~~~~~~~-~~------------------~~~------~~~~~~~~~~~---~~~-~~--~~~-~~~~~i~r~~l~~ 194 (664)
........... +. +.. ........... .+. .. .++ +....++...|..
T Consensus 80 ~ap~l~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~a~~~~dg~vd~~rl~~ 159 (502)
T PRK13369 80 AAPHIIWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAPLKPEYTKGFEYSDCWVDDARLVV 159 (502)
T ss_pred hCCccccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCCchHhcCEEEEEcCeeecHHHHHH
Confidence 11000000000 00 000 00000000000 000 00 000 0112466667766
Q ss_pred HHHHhc--CCceEEeCCeEEEEEeeCCeEEEEEcCC----cEEeccEEEEecCCchh-hhhhh
Q 006025 195 ILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENG----QCYAGDLLIGADGIWSK-VRKNL 250 (664)
Q Consensus 195 ~L~~~~--~~~~i~~~~~v~~v~~~~~~v~v~~~~g----~~i~adlvVgADG~~S~-vR~~l 250 (664)
.|...+ ....++.+++|+++..+++.+.|++.++ .+++|++||.|+|.+|. +.+.+
T Consensus 160 ~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~ 222 (502)
T PRK13369 160 LNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWVTDVIHRV 222 (502)
T ss_pred HHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccHHHHHhhc
Confidence 665543 2235778899999998877777777664 36999999999999885 44433
No 82
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.95 E-value=2.7e-09 Score=113.71 Aligned_cols=145 Identities=24% Similarity=0.277 Sum_probs=72.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCcccc-----CCCCccc-------ceeeC------chHHHHHHhcCh-
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIR-----GEGQYRG-------PIQIQ------SNALAALEAIDL- 138 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~-----~~g~~~~-------~~~l~------~~~~~~L~~l~~- 138 (664)
|||+|||||||||++|+.|++.|.+|+|+||.+...+ +.|.+.- ..... ......|++.+.
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 6999999999999999999999999999999864421 1111100 00000 111233444421
Q ss_pred hHHHHHHHhccccCccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEe
Q 006025 139 DVAEEVMRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKD 216 (664)
Q Consensus 139 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~ 216 (664)
.+..-+.+.+... .. .+.+..+...-.-..+.++|.+.+. ...++++++|.+++.
T Consensus 81 d~~~ff~~~Gv~~-------~~----------------~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~ 137 (409)
T PF03486_consen 81 DLIAFFEELGVPT-------KI----------------EEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK 137 (409)
T ss_dssp HHHHHHHHTT--E-------EE-----------------STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE
T ss_pred HHHHHHHhcCCeE-------EE----------------cCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee
Confidence 1111111211100 00 0011111111123455666655542 235889999999998
Q ss_pred eCCe-EEEEEcCCcEEeccEEEEecCCchh
Q 006025 217 HGDK-VSVVLENGQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 217 ~~~~-v~v~~~~g~~i~adlvVgADG~~S~ 245 (664)
++++ +.|.+++++++.||-||.|.|..|.
T Consensus 138 ~~~~~f~v~~~~~~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 138 KEDGVFGVKTKNGGEYEADAVILATGGKSY 167 (409)
T ss_dssp ETTEEEEEEETTTEEEEESEEEE----SSS
T ss_pred cCCceeEeeccCcccccCCEEEEecCCCCc
Confidence 8877 7788878889999999999998774
No 83
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.95 E-value=1.3e-08 Score=111.84 Aligned_cols=150 Identities=18% Similarity=0.295 Sum_probs=86.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCccccee-eC-chHHHHHHhcChhHHHHHHHhccccCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ-IQ-SNALAALEAIDLDVAEEVMRAGCVTGD 153 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~-l~-~~~~~~L~~l~~g~~~~~~~~~~~~~~ 153 (664)
..+||+|||||+||+++|+.+|+.|.+|.|+|++....-..+ +...+. +. ....+.++.++ ++.......... ..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~-CnpsiGG~akg~lvrEidalG-g~~g~~~d~~gi-q~ 79 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMS-CNPAIGGIAKGHLVREIDALG-GEMGKAIDKTGI-QF 79 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccC-CccccccchhhHHHHHHHhcC-CHHHHHHhhccC-ce
Confidence 468999999999999999999999999999998742110000 000000 00 11122233443 222222221110 00
Q ss_pred cccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEE-EEEcCCc
Q 006025 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VVLENGQ 229 (664)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~-v~~~~g~ 229 (664)
.+ .+...+. .. ......++|..+.+.|.+.+. +..+ ....|+++..+++.+. |.+.+|.
T Consensus 80 r~---ln~skGp----------AV---~s~RaQiDr~ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~grV~GV~t~dG~ 142 (618)
T PRK05192 80 RM---LNTSKGP----------AV---RALRAQADRKLYRAAMREILENQPNLDL-FQGEVEDLIVENGRVVGVVTQDGL 142 (618)
T ss_pred ee---cccCCCC----------ce---eCcHHhcCHHHHHHHHHHHHHcCCCcEE-EEeEEEEEEecCCEEEEEEECCCC
Confidence 00 0000000 00 000125778888888876653 2334 4678888887777664 7788899
Q ss_pred EEeccEEEEecCCchh
Q 006025 230 CYAGDLLIGADGIWSK 245 (664)
Q Consensus 230 ~i~adlvVgADG~~S~ 245 (664)
.+.|+.||.|+|..+.
T Consensus 143 ~I~Ak~VIlATGTFL~ 158 (618)
T PRK05192 143 EFRAKAVVLTTGTFLR 158 (618)
T ss_pred EEECCEEEEeeCcchh
Confidence 9999999999998653
No 84
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.95 E-value=1.2e-08 Score=110.01 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=51.4
Q ss_pred EEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchh-hhhhh
Q 006025 184 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNL 250 (664)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~-vR~~l 250 (664)
...++...+.+.|.+.+. ...++++++|++++.+++++.|.+.+| +++||.||.|+|.+|. +.+.+
T Consensus 143 ~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~vV~A~G~~s~~l~~~~ 211 (393)
T PRK11728 143 TGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQG-EYEARTLINCAGLMSDRLAKMA 211 (393)
T ss_pred ceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCC-EEEeCEEEECCCcchHHHHHHh
Confidence 356788888888887653 235778999999988888888877776 7999999999999984 44443
No 85
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.93 E-value=1.2e-07 Score=103.21 Aligned_cols=59 Identities=19% Similarity=0.124 Sum_probs=42.9
Q ss_pred eeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEE-EEEcCCcEEeccEEEEecCCchh
Q 006025 186 VISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 186 ~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~~g~~i~adlvVgADG~~S~ 245 (664)
.++-..+.+.|.+.+. ...++.+++|++++.+++++. |+.. +.+++||.||.|.|.+|.
T Consensus 197 ~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~-~~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 197 TGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTG-GGVITADAYVVALGSYST 258 (416)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeC-CcEEeCCEEEECCCcchH
Confidence 3455566677765542 235778899999988777764 5544 457999999999999884
No 86
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.93 E-value=2.1e-07 Score=103.34 Aligned_cols=36 Identities=39% Similarity=0.585 Sum_probs=33.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...+||+|||||++|+++|+.|+++|++|+|+||..
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 356899999999999999999999999999999974
No 87
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.92 E-value=2.4e-07 Score=100.41 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=33.8
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHc-CC-eEEEEccCCc
Q 006025 73 SENKKLRILVAGGGIGGLVFALAAKRK-GF-EVLVFEKDMS 111 (664)
Q Consensus 73 ~~~~~~~v~i~g~g~~g~~~a~~l~~~-g~-~~~~~~~~~~ 111 (664)
+....+||+|||||++|+++|+.|+++ |. +|+|+||...
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~ 66 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWL 66 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccc
Confidence 344578999999999999999999995 96 9999999753
No 88
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.85 E-value=5.7e-09 Score=101.41 Aligned_cols=134 Identities=21% Similarity=0.260 Sum_probs=69.5
Q ss_pred EEECCCHHHHHHHHHHHHcCCe-EEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccccc
Q 006025 81 LVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRINGLV 159 (664)
Q Consensus 81 ~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~~~ 159 (664)
+||||||+||++|..|.++|++ |+|+|+...+ | |.|.............. .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~----G---------------------g~w~~~~~~~~~~~~~~---~ 52 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRP----G---------------------GVWRRYYSYTRLHSPSF---F 52 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSS----T---------------------THHHCH-TTTT-BSSSC---C
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC----C---------------------CeeEEeCCCCccccCcc---c
Confidence 6999999999999999999999 9999987432 1 12211100000000000 0
Q ss_pred cCCCCceeeeccCCCcccc-cCCCeEEeeCHHHHHHHHHHhc---CCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccE
Q 006025 160 DGISGSWYIKFDTFTPAAE-KGLPVTRVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDL 235 (664)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adl 235 (664)
..... ...+........ ..........+.++.+.|.+.+ +.. ++++++|++++.+++++.|+++++++++|+.
T Consensus 53 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~-i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~ 129 (203)
T PF13738_consen 53 SSDFG--LPDFESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLE-IRFNTRVESVRRDGDGWTVTTRDGRTIRADR 129 (203)
T ss_dssp TGGSS----CCCHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGG-EETS--EEEEEEETTTEEEEETTS-EEEEEE
T ss_pred ccccc--CCcccccccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcc-cccCCEEEEEEEeccEEEEEEEecceeeeee
Confidence 00000 000000000000 0000011245566666665443 333 8889999999999999999999998999999
Q ss_pred EEEecCCchh
Q 006025 236 LIGADGIWSK 245 (664)
Q Consensus 236 vVgADG~~S~ 245 (664)
||.|.|..|.
T Consensus 130 VVlAtG~~~~ 139 (203)
T PF13738_consen 130 VVLATGHYSH 139 (203)
T ss_dssp EEE---SSCS
T ss_pred EEEeeeccCC
Confidence 9999998665
No 89
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only]
Probab=98.85 E-value=1.3e-09 Score=116.81 Aligned_cols=105 Identities=21% Similarity=0.358 Sum_probs=83.4
Q ss_pred cCCcEEEEecCCCCCCCCCeEEeeccCCCCEEecCCCCCCCCcceeEeCCCcccccceEEEEE--C---------CEEEE
Q 006025 526 MNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--D---------GAFYL 594 (664)
Q Consensus 526 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~---------~~~~~ 594 (664)
.++-|.|....++.-. ....|. ....++|||... ||+.+.+++|||.||.|.+. + -.|+|
T Consensus 153 ~~~~~~lEvlKeg~ii-et~~l~---~~~~~~fgr~~~-----cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i 223 (793)
T KOG1881|consen 153 PAAIFQLEVLKEGAII-ETEDLK---GAAACLFGRLGG-----CDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYI 223 (793)
T ss_pred cccchhhhhhccCcee-eeeecc---cceeEEecccCC-----CccccccCcccccceeeeccCCCCCccccCCCCceEE
Confidence 4455666666555321 222232 356899999998 99999999999999999885 2 23999
Q ss_pred EECCCCceeEEeCCCCceeecCCCCcEEeCCCCEEEECCCceeEEEEEEec
Q 006025 595 IDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIG 645 (664)
Q Consensus 595 ~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~~g~~~~~~~~~~~~~ 645 (664)
.|||||+|||+|.. |+.|..+..++.|++++||..+.+ |.+..+.
T Consensus 224 ~dlgsThgt~~NK~-----rvppk~yir~~Vg~v~~fggsTrl-~i~Qgp~ 268 (793)
T KOG1881|consen 224 YDLGSTHGTFLNKD-----RVPPKVYIRDRVGHVARFGGSTRL-YIFQGPE 268 (793)
T ss_pred eeccccccceeccc-----cCCCcchhhhhHHHHHHhcCceEE-EEeeCCC
Confidence 99999999999999 999999999999999999998766 7666553
No 90
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.83 E-value=5.5e-08 Score=101.58 Aligned_cols=144 Identities=20% Similarity=0.272 Sum_probs=82.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCc--hHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQS--NALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~--~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
||+|||||.||+.||+.+|+.|.+|+|+..........+ +...+.-.. ...+.++.++ +..-.+.+...+ ..++
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~-Cnpsigg~~kg~L~~Eidalg-g~m~~~aD~~~i-~~~~- 76 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMS-CNPSIGGIAKGHLVREIDALG-GLMGRAADETGI-HFRM- 76 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--S-SSSEEESTTHHHHHHHHHHTT--SHHHHHHHHEE-EEEE-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeeccccccccc-chhhhccccccchhHHHhhhh-hHHHHHHhHhhh-hhhc-
Confidence 799999999999999999999999999933222111110 001111111 1223455554 322222222110 0000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC---ceEEeCCeEEEEEeeCCeEE-EEEcCCcEEe
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD---EIILNESNVIDFKDHGDKVS-VVLENGQCYA 232 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~v~~~~~~v~-v~~~~g~~i~ 232 (664)
.+... ........+.++|..+.+.+.+.+.. ..+ ...+|+++..+++.|. |.+.+|+.+.
T Consensus 77 --lN~sk-------------Gpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~~~v~GV~~~~g~~~~ 140 (392)
T PF01134_consen 77 --LNRSK-------------GPAVHALRAQVDRDKYSRAMREKLESHPNLTI-IQGEVTDLIVENGKVKGVVTKDGEEIE 140 (392)
T ss_dssp --ESTTS--------------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEE-EES-EEEEEECTTEEEEEEETTSEEEE
T ss_pred --ccccC-------------CCCccchHhhccHHHHHHHHHHHHhcCCCeEE-EEcccceEEecCCeEEEEEeCCCCEEe
Confidence 00000 01122224589999999999887633 344 4689999988887765 8888999999
Q ss_pred ccEEEEecCC
Q 006025 233 GDLLIGADGI 242 (664)
Q Consensus 233 adlvVgADG~ 242 (664)
+|.||.|+|.
T Consensus 141 a~~vVlaTGt 150 (392)
T PF01134_consen 141 ADAVVLATGT 150 (392)
T ss_dssp ECEEEE-TTT
T ss_pred cCEEEEeccc
Confidence 9999999999
No 91
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only]
Probab=98.79 E-value=3.6e-09 Score=101.82 Aligned_cols=103 Identities=26% Similarity=0.494 Sum_probs=84.7
Q ss_pred cCCcEEEEecCCCCCCCCCeEEeeccCCCCEEecCCCCCCCCcceeEeCCCcccccceEEEEE--CCEEEEEECCCCcee
Q 006025 526 MNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGT 603 (664)
Q Consensus 526 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~~~Dl~S~nGt 603 (664)
+.+.++.+.++++... ..+ -.++..+++||.... ||.+|++.++||+||.+.+. ...++|.||+|++||
T Consensus 15 p~g~hldv~k~d~li~-kl~----iddkr~y~Fgrn~q~----~df~idh~scSrvhaa~vyhkhl~~~~lidl~s~hgt 85 (337)
T KOG1880|consen 15 PAGLHLDVVKGDKLIQ-KLI----IDDKRRYLFGRNHQT----CDFVIDHASCSRVHAALVYHKHLSRIFLIDLGSTHGT 85 (337)
T ss_pred CCCCceeeeecchhHH-HHH----hhhhhhhhhccCCCc----cceEeecchhhhhHhhhhhhhccceEEEEEccCCcce
Confidence 4566777777766431 222 335889999999987 99999999999999999876 566999999999999
Q ss_pred EEeCCCCceeecCCCCcEEeCCCCEEEECCCceeEEEEEE
Q 006025 604 YVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 643 (664)
Q Consensus 604 ~vn~~~~~~~~l~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 643 (664)
|+... ||.+..++++..|..++||..... |.++.
T Consensus 86 f~g~~-----rL~~~~p~~l~i~~~~~fgasTr~-y~lr~ 119 (337)
T KOG1880|consen 86 FLGNE-----RLEPHKPVQLEIGSTFHFGASTRI-YLLRE 119 (337)
T ss_pred eeeee-----eeccCCCccccCCceEEEecccee-eeeec
Confidence 99988 999999999999999999997655 65554
No 92
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.75 E-value=9e-08 Score=104.32 Aligned_cols=150 Identities=21% Similarity=0.232 Sum_probs=83.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcC---------hhHHHHHH
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAID---------LDVAEEVM 145 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~---------~g~~~~~~ 145 (664)
...++|+||||||+||++|..|.+.|++|+|+|+.... | +.....+..-. +.++ ..+++.+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v----G---G~W~~~~~~~~--d~~~~~~~~~~~~s~~Y~~L~ 78 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV----G---GLWVYTPKSES--DPLSLDPTRSIVHSSVYESLR 78 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC----c---ceeecCCCcCC--CccccCCCCcccchhhhhhhh
Confidence 34579999999999999999999999999999997532 1 01111111100 0000 00111111
Q ss_pred HhccccCccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC---C-ceEEeCCeEEEEEeeCCeE
Q 006025 146 RAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---D-EIILNESNVIDFKDHGDKV 221 (664)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~-~~i~~~~~v~~v~~~~~~v 221 (664)
.... . ....+.+ |+.................+.++.+.|.+.+. . ..++++++|++++..+++|
T Consensus 79 tn~p--~-~~m~f~d---------fp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w 146 (461)
T PLN02172 79 TNLP--R-ECMGYRD---------FPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKW 146 (461)
T ss_pred ccCC--H-hhccCCC---------CCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeE
Confidence 1000 0 0000111 11000000000000112345677777776642 2 2378999999999888889
Q ss_pred EEEEcCC--c--EEeccEEEEecCCchh
Q 006025 222 SVVLENG--Q--CYAGDLLIGADGIWSK 245 (664)
Q Consensus 222 ~v~~~~g--~--~i~adlvVgADG~~S~ 245 (664)
+|+..++ . +..+|.||.|.|..+.
T Consensus 147 ~V~~~~~~~~~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 147 RVQSKNSGGFSKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred EEEEEcCCCceEEEEcCEEEEeccCCCC
Confidence 9987643 2 4679999999998653
No 93
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.75 E-value=7e-08 Score=92.91 Aligned_cols=142 Identities=22% Similarity=0.266 Sum_probs=82.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCcc-------ccCCCCccc-ceeeCchHHHHHHhcChhHHHHHHHhccc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA-------IRGEGQYRG-PIQIQSNALAALEAIDLDVAEEVMRAGCV 150 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~-------~~~~g~~~~-~~~l~~~~~~~L~~l~~g~~~~~~~~~~~ 150 (664)
+|+|||+||+|+++|..|+..|++|+|+||.... ....|.++. .-.+.++.-.+++.+ +.+.+.+.+
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~V-----e~~~~~glV 77 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAV-----EALRDDGLV 77 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHH-----HHHHhCCce
Confidence 6999999999999999999999999999997521 011222322 233555554444443 233333332
Q ss_pred cC--ccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCC
Q 006025 151 TG--DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG 228 (664)
Q Consensus 151 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g 228 (664)
.. ..++.+.... .+......|+...-....|-+.|.+-+ .+.++++|+.+...++.|+++.++|
T Consensus 78 ~~W~~~~~~~~~~~-----------~~~~~d~~pyvg~pgmsalak~LAtdL---~V~~~~rVt~v~~~~~~W~l~~~~g 143 (331)
T COG3380 78 DVWTPAVWTFTGDG-----------SPPRGDEDPYVGEPGMSALAKFLATDL---TVVLETRVTEVARTDNDWTLHTDDG 143 (331)
T ss_pred eeccccccccccCC-----------CCCCCCCCccccCcchHHHHHHHhccc---hhhhhhhhhhheecCCeeEEEecCC
Confidence 11 1111111110 000000111111223445666665543 3567999999999999999999776
Q ss_pred -cEEeccEEEEe
Q 006025 229 -QCYAGDLLIGA 239 (664)
Q Consensus 229 -~~i~adlvVgA 239 (664)
+...+|.||.|
T Consensus 144 ~~~~~~d~vvla 155 (331)
T COG3380 144 TRHTQFDDVVLA 155 (331)
T ss_pred CcccccceEEEe
Confidence 46677777766
No 94
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.73 E-value=1.4e-07 Score=99.77 Aligned_cols=171 Identities=16% Similarity=0.220 Sum_probs=94.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcC--CeEEEEccCCccccCCCCc-c----cceeeCchHHHH-HHhcChhHHHHHHHh
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMSAIRGEGQY-R----GPIQIQSNALAA-LEAIDLDVAEEVMRA 147 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~~~~~~~g~~-~----~~~~l~~~~~~~-L~~l~~g~~~~~~~~ 147 (664)
..+||+|||||+.|+++|+.|++++ ++|+|+||.......+... . .++...|..+.+ +...+-..+.++.+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998 9999999987554332221 1 123334442221 111111111122111
Q ss_pred ccccCccccc---------------ccc-CC-CCce-eeeccC-----CCcccc------cCCCeEEeeCHHHHHHHHHH
Q 006025 148 GCVTGDRING---------------LVD-GI-SGSW-YIKFDT-----FTPAAE------KGLPVTRVISRMTLQQILAK 198 (664)
Q Consensus 148 ~~~~~~~~~~---------------~~~-~~-~~~~-~~~~~~-----~~~~~~------~~~~~~~~i~r~~l~~~L~~ 198 (664)
.......... ... .. .+-. ...++. ..|... .-.|-+..++-..+-..|.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred hCCcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceEcHHHHHHHHHH
Confidence 1100000000 000 00 0000 000000 000000 01123456777777777766
Q ss_pred hc--CCceEEeCCeEEEEEeeCCe-EEEEEcCCcE-EeccEEEEecCCchhh
Q 006025 199 AV--GDEIILNESNVIDFKDHGDK-VSVVLENGQC-YAGDLLIGADGIWSKV 246 (664)
Q Consensus 199 ~~--~~~~i~~~~~v~~v~~~~~~-v~v~~~~g~~-i~adlvVgADG~~S~v 246 (664)
.+ ....++++++|++++..+++ ..+.+.+|++ ++|++||.|-|..|--
T Consensus 162 ~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 162 EAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 54 23468899999999998884 5567778866 9999999999998753
No 95
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.73 E-value=1.3e-08 Score=110.62 Aligned_cols=146 Identities=20% Similarity=0.264 Sum_probs=35.6
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCc-hHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQS-NALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~-~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
|||||||||+|++||+.+|+.|.+|+|+|+....-. .....+...+.. .... .+-.++..++.......... .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG-~~t~~~~~~~~~~~~~~---~~~~gi~~e~~~~~~~~~~~-~- 74 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGG-MATSGGVSPFDGNHDED---QVIGGIFREFLNRLRARGGY-P- 74 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTG-GGGGSSS-EETTEEHHH---HHHHHHHHHHHHST---------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCC-cceECCcCChhhcchhh---ccCCCHHHHHHHHHhhhccc-c-
Confidence 899999999999999999999999999999764211 101111111221 1111 11114555554432110000 0
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEE-EEEcC--C-cEE
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLEN--G-QCY 231 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~~--g-~~i 231 (664)
.. ....+.. .+.+++..+...|.+.+. ...+++++.|+++..+++.+. |++.+ | .++
T Consensus 75 -~~-~~~~~~~---------------~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i 137 (428)
T PF12831_consen 75 -QE-DRYGWVS---------------NVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEI 137 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cc-ccccccc---------------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 0000000 012233333333333321 234788999999998876543 44443 3 689
Q ss_pred eccEEEEecCCchhhh
Q 006025 232 AGDLLIGADGIWSKVR 247 (664)
Q Consensus 232 ~adlvVgADG~~S~vR 247 (664)
+|+++|+|+|-....+
T Consensus 138 ~A~~~IDaTG~g~l~~ 153 (428)
T PF12831_consen 138 RAKVFIDATGDGDLAA 153 (428)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 9999999999644333
No 96
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.72 E-value=1.1e-06 Score=94.41 Aligned_cols=63 Identities=25% Similarity=0.331 Sum_probs=46.1
Q ss_pred EeeCHHHHHHHHHHhc---CCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchhhhh
Q 006025 185 RVISRMTLQQILAKAV---GDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRK 248 (664)
Q Consensus 185 ~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~vR~ 248 (664)
..++-..+.+.|.+.+ +...+..++.+..++.+...+.|...+|+ ++|+.||.|.|.++..--
T Consensus 151 ~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~-i~a~~vv~a~G~~~~~l~ 216 (387)
T COG0665 151 GHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAGAWAGELA 216 (387)
T ss_pred CcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc-EEeCEEEEcCchHHHHHH
Confidence 3566667777776654 33456678899988874345677777777 999999999999977543
No 97
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.70 E-value=1.4e-07 Score=102.92 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=50.2
Q ss_pred eEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEee-CCeEEEEE---cCCc--EEeccEEEEecCCchh-hhhhh
Q 006025 183 VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDH-GDKVSVVL---ENGQ--CYAGDLLIGADGIWSK-VRKNL 250 (664)
Q Consensus 183 ~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~-~~~v~v~~---~~g~--~i~adlvVgADG~~S~-vR~~l 250 (664)
.+..|+...|.+.|.+.+. ...++++++|++++.. +++|++++ .+++ +++||+||.|-|.+|. +.+.+
T Consensus 177 ~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~ 254 (497)
T PRK13339 177 EGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIPLLQKS 254 (497)
T ss_pred CceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence 3456888888888877652 3468889999999877 66787763 3442 6999999988888874 44444
No 98
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.63 E-value=3.4e-07 Score=100.66 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=44.8
Q ss_pred EeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchh
Q 006025 185 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 185 ~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~ 245 (664)
..++-..+.+.|.+.+. ...++.+++|++++. ++.+.|++.+| +++||.||.|.|++|.
T Consensus 178 g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g-~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 178 ASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDG-QVTADKVVLALNAWMA 238 (460)
T ss_pred eEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCc-EEECCEEEEccccccc
Confidence 46777888888876652 235788999999975 45566777666 6999999999998864
No 99
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.62 E-value=6.3e-08 Score=104.21 Aligned_cols=153 Identities=22% Similarity=0.249 Sum_probs=78.4
Q ss_pred EEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccc-eeeCch--HHHHHHhcCh--hHHHHHHHhccccCccc
Q 006025 81 LVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGP-IQIQSN--ALAALEAIDL--DVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 81 ~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~-~~l~~~--~~~~L~~l~~--g~~~~~~~~~~~~~~~~ 155 (664)
+|||||++|+++|+.|+++|++|+|+||.+.........+++ ..+... ....++.... .......... .....+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~-~~~d~~ 79 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRF-SNKDLI 79 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhC-CHHHHH
Confidence 699999999999999999999999999976432211111111 111110 1111121110 0001100000 000000
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCCcEEec
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAG 233 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a 233 (664)
. +.... +-.... ...+..+...-....+.+.|.+.+. ...++.+++|++++.+++.+.+++ +++++.+
T Consensus 80 ~-~~~~~-Gv~~~~-------~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~-~~~~i~a 149 (400)
T TIGR00275 80 D-FFESL-GLELKV-------EEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET-SGGEYEA 149 (400)
T ss_pred H-HHHHc-CCeeEE-------ecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE-CCcEEEc
Confidence 0 11000 000000 0001100011123455556655542 235788999999988777777776 5668999
Q ss_pred cEEEEecCCch
Q 006025 234 DLLIGADGIWS 244 (664)
Q Consensus 234 dlvVgADG~~S 244 (664)
|.||.|+|..|
T Consensus 150 d~VIlAtG~~s 160 (400)
T TIGR00275 150 DKVILATGGLS 160 (400)
T ss_pred CEEEECCCCcc
Confidence 99999999987
No 100
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.62 E-value=4.4e-07 Score=96.84 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=41.0
Q ss_pred EeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchh
Q 006025 185 RVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 185 ~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~ 245 (664)
..++-..+...|.+.+. ...++.+++|++++.. .|++.+| .++||.||.|.|.+|.
T Consensus 140 g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g-~i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 140 LRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGADFE 198 (365)
T ss_pred eeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCC-cEEeCEEEECCCCChh
Confidence 45677777777776541 3457788999999643 4666666 4789999999999874
No 101
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.62 E-value=7.5e-07 Score=97.97 Aligned_cols=68 Identities=13% Similarity=0.110 Sum_probs=48.6
Q ss_pred eEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCe-EEEEEc---CCc--EEeccEEEEecCCch-hhhhhh
Q 006025 183 VTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK-VSVVLE---NGQ--CYAGDLLIGADGIWS-KVRKNL 250 (664)
Q Consensus 183 ~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~-v~v~~~---~g~--~i~adlvVgADG~~S-~vR~~l 250 (664)
....++...+.+.|.+.+. ...++++++|++++.++++ |.+++. +|+ +++|++||.|.|.+| .+++.+
T Consensus 176 ~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~ 253 (494)
T PRK05257 176 IGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKS 253 (494)
T ss_pred CceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHc
Confidence 3457888889888877653 2358889999999986554 766653 353 699999887777765 455554
No 102
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.61 E-value=2.2e-05 Score=86.36 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=43.0
Q ss_pred HHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchhh
Q 006025 192 LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 246 (664)
Q Consensus 192 l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~v 246 (664)
|.+.|.+.+....|+++++|++|+.++++++|++++|+++.||.||.|--.+...
T Consensus 223 l~~~l~~~l~~~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~vI~a~p~~~~~ 277 (451)
T PRK11883 223 LIEALEEKLPAGTIHKGTPVTKIDKSGDGYEIVLSNGGEIEADAVIVAVPHPVLP 277 (451)
T ss_pred HHHHHHHhCcCCeEEeCCEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCHHHHH
Confidence 4444555554425889999999999888899999999999999999997765433
No 103
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.61 E-value=3.6e-06 Score=95.44 Aligned_cols=35 Identities=37% Similarity=0.586 Sum_probs=33.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d 104 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVERED 104 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 45899999999999999999999999999999974
No 104
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.56 E-value=3.2e-07 Score=94.88 Aligned_cols=109 Identities=23% Similarity=0.345 Sum_probs=70.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
+||+|||||++|+++|..|++.|++|+|+|+... .| .+... . .+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~----gg----~~~~~------------~--------------~~~~ 46 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP----GG----QLTTT------------T--------------EVEN 46 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC----Cc----ceeec------------c--------------cccc
Confidence 5899999999999999999999999999998641 11 01000 0 0000
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHh---cCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEecc
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKA---VGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGD 234 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~---~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ad 234 (664)
+. + +. ..+....+...+.+. .+. .++. ++|++++.+++.+.+++.+++++++|
T Consensus 47 ~~----~-----~~-------------~~~~~~~~~~~l~~~~~~~gv-~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d 102 (300)
T TIGR01292 47 YP----G-----FP-------------EGISGPELMEKMKEQAVKFGA-EIIY-EEVIKVDLSDRPFKVKTGDGKEYTAK 102 (300)
T ss_pred cC----C-----CC-------------CCCChHHHHHHHHHHHHHcCC-eEEE-EEEEEEEecCCeeEEEeCCCCEEEeC
Confidence 00 0 00 001111222233222 233 3555 78999998888888888888899999
Q ss_pred EEEEecCCch
Q 006025 235 LLIGADGIWS 244 (664)
Q Consensus 235 lvVgADG~~S 244 (664)
.||.|.|...
T Consensus 103 ~liiAtG~~~ 112 (300)
T TIGR01292 103 AVIIATGASA 112 (300)
T ss_pred EEEECCCCCc
Confidence 9999999854
No 105
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.54 E-value=3e-07 Score=101.70 Aligned_cols=138 Identities=22% Similarity=0.246 Sum_probs=78.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
++|+|||||++||++|..|.+.|++|+++||.+. .| |+|..-..... ....+..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~----iG---------------------G~W~~~~~~~~-g~~~~y~ 55 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD----IG---------------------GLWRYTENPED-GRSSVYD 55 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS----SS---------------------GGGCHSTTCCC-SEGGGST
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC----CC---------------------ccCeeCCcCCC-Ccccccc
Confidence 5799999999999999999999999999999752 22 22211000000 0000000
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC----ceEEeCCeEEEEEeeC-----CeEEEEEcC-
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG-----DKVSVVLEN- 227 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~v~~~~-----~~v~v~~~~- 227 (664)
............|..+.. ..+.| ...++.++.+.|.+-+.. ..|+++++|++++..+ +.|+|+..+
T Consensus 56 sl~~n~sk~~~~fsdfp~--p~~~p--~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~ 131 (531)
T PF00743_consen 56 SLHTNTSKEMMAFSDFPF--PEDYP--DFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND 131 (531)
T ss_dssp T-B-SS-GGGSCCTTS-H--CCCCS--SSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT
T ss_pred ceEEeeCchHhcCCCcCC--CCCCC--CCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC
Confidence 000001111122222111 11222 246788899998776531 2489999999998764 368888764
Q ss_pred C--cEEeccEEEEecCCchh
Q 006025 228 G--QCYAGDLLIGADGIWSK 245 (664)
Q Consensus 228 g--~~i~adlvVgADG~~S~ 245 (664)
| ++-.+|.||.|.|.++.
T Consensus 132 g~~~~~~fD~VvvatG~~~~ 151 (531)
T PF00743_consen 132 GKEETEEFDAVVVATGHFSK 151 (531)
T ss_dssp TEEEEEEECEEEEEE-SSSC
T ss_pred CeEEEEEeCeEEEcCCCcCC
Confidence 3 24568999999999873
No 106
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.54 E-value=1.8e-05 Score=87.40 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=39.0
Q ss_pred HHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCch
Q 006025 196 LAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (664)
Q Consensus 196 L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S 244 (664)
|.+.++...++.+++|+.|+.++++++|++++|++++||.||.|--...
T Consensus 231 l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~t~P~~~ 279 (462)
T TIGR00562 231 IEKRLKLTKVYKGTKVTKLSHRGSNYTLELDNGVTVETDSVVVTAPHKA 279 (462)
T ss_pred HHHHhccCeEEcCCeEEEEEecCCcEEEEECCCcEEEcCEEEECCCHHH
Confidence 3333432347889999999998889999988888999999999887653
No 107
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.52 E-value=6.4e-07 Score=100.30 Aligned_cols=60 Identities=23% Similarity=0.374 Sum_probs=43.0
Q ss_pred eeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEE-EEEc---CC--cEEeccEEEEecCCchh
Q 006025 186 VISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLIGADGIWSK 245 (664)
Q Consensus 186 ~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~---~g--~~i~adlvVgADG~~S~ 245 (664)
.++-..|...+...+. ...++.+++|+++..+++++. |++. ++ .+++|+.||-|.|.+|.
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH
Confidence 5677777776655432 235778999999988776643 4442 23 47999999999999884
No 108
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.52 E-value=1.5e-06 Score=95.22 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=48.9
Q ss_pred EeeCHHHHHHHHHHhcCC--------ceEEeCCeEEEEEee-CCeEEEEEcCCcEEeccEEEEecCCchh-hhhhh
Q 006025 185 RVISRMTLQQILAKAVGD--------EIILNESNVIDFKDH-GDKVSVVLENGQCYAGDLLIGADGIWSK-VRKNL 250 (664)
Q Consensus 185 ~~i~r~~l~~~L~~~~~~--------~~i~~~~~v~~v~~~-~~~v~v~~~~g~~i~adlvVgADG~~S~-vR~~l 250 (664)
..++-..|.+.|.+.+.. ..++.+++|++++.+ ++.+.|+..+| +++||.||.|.|.+|. +.+.+
T Consensus 206 ~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G-~i~A~~VVvaAG~~S~~La~~~ 280 (497)
T PTZ00383 206 TTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRG-EIRARFVVVSACGYSLLFAQKM 280 (497)
T ss_pred EEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCC-EEEeCEEEECcChhHHHHHHHh
Confidence 357777787777665432 247889999999987 45577877776 6999999999999985 44444
No 109
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.52 E-value=7e-06 Score=90.57 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchhhhhhh
Q 006025 191 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~vR~~l 250 (664)
.|.+.|.+.+....++++++|++|+.+++++.|++.+|+++.||.||.|--. ..+++.+
T Consensus 227 ~l~~~l~~~l~~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~ad~VI~a~p~-~~~~~ll 285 (463)
T PRK12416 227 TIIDRLEEVLTETVVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAPH-DIAETLL 285 (463)
T ss_pred HHHHHHHHhcccccEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEECCCH-HHHHhhc
Confidence 3445555555433488999999999988899998888888999999998843 3344443
No 110
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.52 E-value=1.3e-06 Score=96.20 Aligned_cols=148 Identities=20% Similarity=0.319 Sum_probs=83.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCccccee-eCc-hHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ-IQS-NALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~-l~~-~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
+||+|||||++|+.+|..+++.|.+|+|+|+........+ +...+. +.. ...+-++.++ |....+.+.... ...+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~-c~ps~gG~a~g~l~rEidaLG-G~~~~~~d~~~i-~~r~ 77 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCS-CNPAIGGPAKGILVKEIDALG-GLMGKAADKAGL-QFRV 77 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCC-ccccccccccchhhhhhhccc-chHHHHHHhhce-ehee
Confidence 6999999999999999999999999999998642110100 000000 011 1123344443 222222221110 0000
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEee-CCe-EEEEEcCCcE
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG---DEIILNESNVIDFKDH-GDK-VSVVLENGQC 230 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~-~~~-v~v~~~~g~~ 230 (664)
.+...+ +.. ..+ ...+++..+.+.|.+.+. +..++ ...|+++..+ ++. +.|.+.+|..
T Consensus 78 ---ln~skg----------pAV--~~~-RaQVDr~~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~g~V~GV~t~~G~~ 140 (617)
T TIGR00136 78 ---LNSSKG----------PAV--RAT-RAQIDKVLYRKAMRNALENQPNLSLF-QGEVEDLILEDNDEIKGVVTQDGLK 140 (617)
T ss_pred ---cccCCC----------Ccc--ccc-HHhCCHHHHHHHHHHHHHcCCCcEEE-EeEEEEEEEecCCcEEEEEECCCCE
Confidence 000000 000 001 136788888888876653 33344 4578887654 444 4577888889
Q ss_pred EeccEEEEecCCchh
Q 006025 231 YAGDLLIGADGIWSK 245 (664)
Q Consensus 231 i~adlvVgADG~~S~ 245 (664)
++|+.||.|.|..+.
T Consensus 141 I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 141 FRAKAVIITTGTFLR 155 (617)
T ss_pred EECCEEEEccCcccC
Confidence 999999999999863
No 111
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.52 E-value=9.1e-07 Score=97.19 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=47.6
Q ss_pred EEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeC-CeEEEEEc---CC--cEEeccEEEEecCCch-hhhhhh
Q 006025 184 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHG-DKVSVVLE---NG--QCYAGDLLIGADGIWS-KVRKNL 250 (664)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~-~~v~v~~~---~g--~~i~adlvVgADG~~S-~vR~~l 250 (664)
...++...+.+.|.+.+. ...++++++|++++.++ +.|.+++. +| .+++|++||.|.|.+| .+++.+
T Consensus 172 ~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~ 247 (483)
T TIGR01320 172 GTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKS 247 (483)
T ss_pred CEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHHHHHc
Confidence 457888889888887763 23588899999998754 45666543 34 3689999977766655 566655
No 112
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.51 E-value=4.9e-07 Score=100.77 Aligned_cols=112 Identities=23% Similarity=0.320 Sum_probs=75.0
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
...+||+||||||+|+++|..|++.|++|+|+|+. .|. .+ .. .. +
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~------~GG---~~-~~--------~~--~--------------- 253 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER------FGG---QV-LD--------TM--G--------------- 253 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC------CCC---ee-ec--------cC--c---------------
Confidence 44689999999999999999999999999999753 110 00 00 00 0
Q ss_pred ccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCCcEEe
Q 006025 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (664)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ 232 (664)
+..+. .+. ......+.+.|.+.+. ...++.+++|+++...++.+.|.+.+|+.++
T Consensus 254 ~~~~~---------~~~--------------~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~ 310 (517)
T PRK15317 254 IENFI---------SVP--------------ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLK 310 (517)
T ss_pred ccccC---------CCC--------------CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEE
Confidence 00000 000 0112234444444331 2346778999999887778888888888999
Q ss_pred ccEEEEecCCch
Q 006025 233 GDLLIGADGIWS 244 (664)
Q Consensus 233 adlvVgADG~~S 244 (664)
+|.||.|+|.++
T Consensus 311 a~~vViAtG~~~ 322 (517)
T PRK15317 311 AKTVILATGARW 322 (517)
T ss_pred cCEEEECCCCCc
Confidence 999999999965
No 113
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.50 E-value=8.7e-07 Score=96.25 Aligned_cols=37 Identities=30% Similarity=0.463 Sum_probs=34.1
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCe-EEEEccCC
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~ 110 (664)
....+||+|||||++|+++|+.|.+.|.. ++|+||+.
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~ 42 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRD 42 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccC
Confidence 34578999999999999999999999999 99999985
No 114
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.49 E-value=9e-07 Score=94.89 Aligned_cols=139 Identities=20% Similarity=0.218 Sum_probs=84.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
...+|+||||||+||++|..|.+.|++|+++||.... |. -....+..- .....+.+.+.-..+ . .+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i----GG---lW~y~~~~~----~~~ss~Y~~l~tn~p--K-e~ 70 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI----GG---LWKYTENVE----VVHSSVYKSLRTNLP--K-EM 70 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc----cc---eEeecCccc----ccccchhhhhhccCC--h-hh
Confidence 4579999999999999999999999999999997532 11 111111111 000011111111100 0 00
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC----ceEEeCCeEEEEEeeC-CeEEEEEcCC--
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD----EIILNESNVIDFKDHG-DKVSVVLENG-- 228 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~v~~~~-~~v~v~~~~g-- 228 (664)
..+.+ |+. ... .+ .+..++.++.+.|..-+.. ..+.++++|..++... +.|.|...++
T Consensus 71 ~~~~d---------fpf---~~~--~~-~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~ 135 (448)
T KOG1399|consen 71 MGYSD---------FPF---PER--DP-RYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGT 135 (448)
T ss_pred hcCCC---------CCC---ccc--Cc-ccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCc
Confidence 00111 110 000 11 2345666888888776532 2488999999999888 7999998765
Q ss_pred --cEEeccEEEEecCCc
Q 006025 229 --QCYAGDLLIGADGIW 243 (664)
Q Consensus 229 --~~i~adlvVgADG~~ 243 (664)
+..-+|.||.|.|-+
T Consensus 136 ~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 136 QIEEEIFDAVVVCTGHY 152 (448)
T ss_pred ceeEEEeeEEEEcccCc
Confidence 367899999999998
No 115
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.49 E-value=9.6e-06 Score=87.80 Aligned_cols=62 Identities=27% Similarity=0.408 Sum_probs=49.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChh
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLD 139 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g 139 (664)
+..+||+|||||+.|+-.|+-++.+|++|+|+|++.... |.......+-..+++.|+.....
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~As---GTSsrstkLiHGGlRYl~~~e~~ 71 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLAS---GTSSRSTKLIHGGLRYLEQYEFS 71 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccC---cccCccccCccchhhhhhhcchH
Confidence 367999999999999999999999999999999986432 23233445677788888776555
No 116
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.48 E-value=3e-06 Score=94.76 Aligned_cols=36 Identities=42% Similarity=0.606 Sum_probs=33.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||+|+|||++|+.+++.|.+|+|+||...
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 468999999999999999999999999999999754
No 117
>PLN02661 Putative thiazole synthesis
Probab=98.47 E-value=2.5e-06 Score=87.93 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=33.5
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHc-CCeEEEEccCCc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMS 111 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~~~~ 111 (664)
....+||+|||||++|+++|+.|++. |++|+|+||...
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 34468999999999999999999986 899999998754
No 118
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.46 E-value=1.3e-06 Score=97.21 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=72.9
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
...+||+||||||||+++|..|++.|++|+|+|... .|. . .. .. +
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~-----GG~----~-~~--------~~--~--------------- 254 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI-----GGQ----V-KD--------TV--G--------------- 254 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC-----CCc----c-cc--------Cc--C---------------
Confidence 446899999999999999999999999999997421 111 0 00 00 0
Q ss_pred ccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhc--CCceEEeCCeEEEEEeeCCeEEEEEcCCcEEe
Q 006025 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAV--GDEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (664)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~--~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ 232 (664)
+..+.. .. ......+.+.|.+.+ ....++.+++|++++.+++.+.+++.+|+.++
T Consensus 255 ~~~~~~---------~~--------------~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~ 311 (515)
T TIGR03140 255 IENLIS---------VP--------------YTTGSQLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLK 311 (515)
T ss_pred cccccc---------cC--------------CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEE
Confidence 000000 00 001122333333322 12346778999999887777888888888999
Q ss_pred ccEEEEecCCch
Q 006025 233 GDLLIGADGIWS 244 (664)
Q Consensus 233 adlvVgADG~~S 244 (664)
+|.||.|+|++.
T Consensus 312 ~d~lIlAtGa~~ 323 (515)
T TIGR03140 312 AKSVIVATGARW 323 (515)
T ss_pred eCEEEECCCCCc
Confidence 999999999863
No 119
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.43 E-value=5.8e-06 Score=91.54 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcC---CceEEeCCeEEEEEeeCCeEE-EEEcC-C--cEEeccEEEEecCCchhhhh
Q 006025 190 MTLQQILAKAVG---DEIILNESNVIDFKDHGDKVS-VVLEN-G--QCYAGDLLIGADGIWSKVRK 248 (664)
Q Consensus 190 ~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~v~-v~~~~-g--~~i~adlvVgADG~~S~vR~ 248 (664)
..+.+.|.+.+. ...++.++.++++..+++.+. +...+ + ..+.|+.||.|+|..|.+..
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccCCCC
Confidence 456677766653 346888999999987666554 44332 3 46899999999999998654
No 120
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.43 E-value=2.5e-06 Score=96.12 Aligned_cols=57 Identities=16% Similarity=0.139 Sum_probs=40.9
Q ss_pred HHHHHHHHhc---CCceEEeCCeEEEEEeeCCeEE----EEEcCC--cEEeccEEEEecCCchhhh
Q 006025 191 TLQQILAKAV---GDEIILNESNVIDFKDHGDKVS----VVLENG--QCYAGDLLIGADGIWSKVR 247 (664)
Q Consensus 191 ~l~~~L~~~~---~~~~i~~~~~v~~v~~~~~~v~----v~~~~g--~~i~adlvVgADG~~S~vR 247 (664)
.+...|.+++ ....++.++.++++..+++.+. +...+| ..+.|+.||.|+|..|.+-
T Consensus 134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~~l~ 199 (582)
T PRK09231 134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVY 199 (582)
T ss_pred HHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCCCcCCC
Confidence 4666666554 2335778999999987766654 233566 3789999999999999764
No 121
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.5e-06 Score=89.05 Aligned_cols=112 Identities=25% Similarity=0.416 Sum_probs=69.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCe-EEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDR 154 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~ 154 (664)
+.+||+|||||||||++|+.++|.|++ ++|+|+.... |+ + ..+. .
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g----g~-----------------~--~~~~-----------~ 47 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG----GQ-----------------L--TKTT-----------D 47 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC----Cc-----------------c--ccce-----------e
Confidence 468999999999999999999999999 6677764210 10 0 0000 0
Q ss_pred ccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCCcEEe
Q 006025 155 INGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYA 232 (664)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~ 232 (664)
+. + ++ +.+ ..+.-..|.+.+.+.+. ...+.. ..|.+++..++.+.|+.++++ ++
T Consensus 48 ve----n--------yp--------g~~--~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ 103 (305)
T COG0492 48 VE----N--------YP--------GFP--GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YE 103 (305)
T ss_pred ec----C--------CC--------CCc--cCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EE
Confidence 00 0 00 000 01222345555544432 112332 677777766657788888887 99
Q ss_pred ccEEEEecCCchh
Q 006025 233 GDLLIGADGIWSK 245 (664)
Q Consensus 233 adlvVgADG~~S~ 245 (664)
|+.||.|.|....
T Consensus 104 ak~vIiAtG~~~~ 116 (305)
T COG0492 104 AKAVIIATGAGAR 116 (305)
T ss_pred EeEEEECcCCccc
Confidence 9999999998754
No 122
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.43 E-value=3.5e-06 Score=93.01 Aligned_cols=36 Identities=39% Similarity=0.552 Sum_probs=33.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||||||+|++|+++|+.|+++|.+|+|+||.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 457999999999999999999999999999999753
No 123
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.42 E-value=1.4e-06 Score=92.08 Aligned_cols=114 Identities=15% Similarity=0.227 Sum_probs=67.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccC---CCCcc-cceeeCchHHHHHHhcChhHHH-HHHHhccccC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRG---EGQYR-GPIQIQSNALAALEAIDLDVAE-EVMRAGCVTG 152 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~---~g~~~-~~~~l~~~~~~~L~~l~~g~~~-~~~~~~~~~~ 152 (664)
.||+|||||++|+.+|+.|+++|++|+|+|+++..... ..... ....++..+...+... |+|. ++...+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~--Gll~~em~~lgs--- 77 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAV--GLLKEEMRRLGS--- 77 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcC--CchHHHHHHhcc---
Confidence 58999999999999999999999999999987543211 11011 1223444555566666 5554 3322211
Q ss_pred ccccccccCCCCceeeeccCCCcccccCCCe--EEeeCHHHHHHHHHHhcCC---ceEEeCCeEEEEE
Q 006025 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPV--TRVISRMTLQQILAKAVGD---EIILNESNVIDFK 215 (664)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~r~~l~~~L~~~~~~---~~i~~~~~v~~v~ 215 (664)
.. +.. ....+.|. ...++|..|.+.|.+++.. ..++ ..+|+++.
T Consensus 78 --l~-~~a---------------ad~~~vPA~gaLvvdR~~~~~~L~~~L~~~pnI~l~-~~eV~~l~ 126 (436)
T PRK05335 78 --LI-MEA---------------ADAHRVPAGGALAVDREGFSEYVTEALENHPLITVI-REEVTEIP 126 (436)
T ss_pred --hh-eec---------------ccccCCCCccceecCHHHHHHHHHHHHHcCCCcEEE-ccchhccc
Confidence 00 000 00111111 1467898899999888633 2444 55777764
No 124
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.42 E-value=1.1e-05 Score=89.65 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=33.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||||||+|.+|+++|+.+++.|.+|+|+||.+.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 468999999999999999999999999999999754
No 125
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.39 E-value=5.2e-06 Score=90.91 Aligned_cols=33 Identities=39% Similarity=0.612 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~ 111 (664)
||||||||++|+++|+.++++| .+|+|+||.+.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC
Confidence 7999999999999999999999 99999999754
No 126
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.39 E-value=4.2e-06 Score=94.16 Aligned_cols=57 Identities=18% Similarity=0.194 Sum_probs=40.6
Q ss_pred HHHHHHHHHhc---CCceEEeCCeEEEEEeeCCeEE----EEEcCC--cEEeccEEEEecCCchhh
Q 006025 190 MTLQQILAKAV---GDEIILNESNVIDFKDHGDKVS----VVLENG--QCYAGDLLIGADGIWSKV 246 (664)
Q Consensus 190 ~~l~~~L~~~~---~~~~i~~~~~v~~v~~~~~~v~----v~~~~g--~~i~adlvVgADG~~S~v 246 (664)
..|.+.|.+++ ....++.++.++++..+++.|. +...+| ..+.|+.||.|+|..|.+
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCCCccc
Confidence 35666666654 2345778999999887766654 223466 468999999999999865
No 127
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.38 E-value=4.3e-06 Score=94.44 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
||+|||||+||+++|+.+++.|.+|+|+||...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccCC
Confidence 799999999999999999999999999999753
No 128
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.30 E-value=8.7e-06 Score=91.98 Aligned_cols=36 Identities=31% Similarity=0.509 Sum_probs=32.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcC---CeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKG---FEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g---~~~~~~~~~~~ 111 (664)
..+||+|||+|+|||++|+.+++.| .+|+|+||...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 3579999999999999999999998 89999999754
No 129
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.29 E-value=2.7e-06 Score=95.57 Aligned_cols=33 Identities=33% Similarity=0.611 Sum_probs=31.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
.+||+|||||||||++|+.|+++|++|+|+|+.
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~ 36 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD 36 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence 589999999999999999999999999999985
No 130
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.28 E-value=1.6e-05 Score=87.56 Aligned_cols=33 Identities=30% Similarity=0.738 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+||+|||+|+|||++|+.+++.|.+|+|+||..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 699999999999999999999999999999974
No 131
>PLN02612 phytoene desaturase
Probab=98.27 E-value=0.00011 Score=82.84 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=33.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+.+|+|||||++||++|+.|+++|++|+|+|+..
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~ 126 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD 126 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 346799999999999999999999999999999865
No 132
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.26 E-value=1.8e-05 Score=64.07 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+|+|||||+.|+.+|..|++.|.+|+|+++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 489999999999999999999999999998753
No 133
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.24 E-value=1.3e-05 Score=87.15 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=31.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||+|.|||++|+.++ .|.+|+|+||.+.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~ 37 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL 37 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 3579999999999999999985 7999999999754
No 134
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.24 E-value=1.6e-05 Score=73.55 Aligned_cols=57 Identities=21% Similarity=0.289 Sum_probs=42.7
Q ss_pred eeCHHHHHHHHHHh-------cCC--ceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCC
Q 006025 186 VISRMTLQQILAKA-------VGD--EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 242 (664)
Q Consensus 186 ~i~r~~l~~~L~~~-------~~~--~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~ 242 (664)
.+.|..+-+.|.+. +.. .+.+...+|++++..+++..+.+++|..+.+|.||.|.|.
T Consensus 90 f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 90 FPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence 45566655555433 222 2334467999999999999999999999999999999995
No 135
>PLN02568 polyamine oxidase
Probab=98.23 E-value=3.3e-05 Score=86.00 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCC
Q 006025 190 MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 242 (664)
Q Consensus 190 ~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~ 242 (664)
..|.+.|.+.+....|+++++|+.|+..+++|+|++.+|++++||.||.+--.
T Consensus 242 ~~Li~~La~~L~~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~aD~VIvTvPl 294 (539)
T PLN02568 242 LSVIEALASVLPPGTIQLGRKVTRIEWQDEPVKLHFADGSTMTADHVIVTVSL 294 (539)
T ss_pred HHHHHHHHhhCCCCEEEeCCeEEEEEEeCCeEEEEEcCCCEEEcCEEEEcCCH
Confidence 34777888887655688999999999999999999999999999999998664
No 136
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.21 E-value=2.9e-06 Score=95.71 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=31.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcC--CeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~~ 111 (664)
..+||+|||||+|||++|+.+++.| .+|+|+||...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 3579999999999999999999874 89999999753
No 137
>PLN02529 lysine-specific histone demethylase 1
Probab=98.21 E-value=8.8e-07 Score=100.60 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=54.7
Q ss_pred CcccccccccccccccccccccCCCcccccccccccCCCCCCCCCCCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEcc
Q 006025 29 HSCIEFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (664)
Q Consensus 29 ~~~~~i~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (664)
.-.++|++||++ |.......+...|. +||..+. +.++....++|+|||||++||++|..|+++|++|+|+|+
T Consensus 120 ~~~~~i~~ci~~--c~~~l~~~~~inc~--vnp~~~~----~~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~ 191 (738)
T PLN02529 120 TVSSEYEHLISA--AYDFLLYNGYINFG--VSPSFAS----PIPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEG 191 (738)
T ss_pred hchhhHHHHHHH--HHHHHHhCCCccee--ecccccC----CCCcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEec
Confidence 346779999983 22223333446676 8887654 222334567999999999999999999999999999998
Q ss_pred CC
Q 006025 109 DM 110 (664)
Q Consensus 109 ~~ 110 (664)
+.
T Consensus 192 ~~ 193 (738)
T PLN02529 192 RN 193 (738)
T ss_pred Cc
Confidence 65
No 138
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.20 E-value=1.9e-06 Score=67.26 Aligned_cols=30 Identities=40% Similarity=0.668 Sum_probs=27.5
Q ss_pred EECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 82 VAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 82 i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
|||||++||++|+.|++.|++|+|+|+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 899999999999999999999999999854
No 139
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.19 E-value=3.3e-05 Score=87.90 Aligned_cols=36 Identities=31% Similarity=0.479 Sum_probs=32.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||+|.|||++|+.+++.|.+|+|+||...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 457999999999999999999999999999998543
No 140
>PRK07121 hypothetical protein; Validated
Probab=98.18 E-value=4.3e-05 Score=84.87 Aligned_cols=36 Identities=31% Similarity=0.453 Sum_probs=33.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||||||+|.+|+++|+.+++.|.+|+|+||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 468999999999999999999999999999999754
No 141
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.18 E-value=1.7e-05 Score=86.33 Aligned_cols=33 Identities=39% Similarity=0.657 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
||||||+|+|||++|+.++++|.+|+|+||.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 899999999999999999999999999999865
No 142
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=98.17 E-value=1.9e-05 Score=78.79 Aligned_cols=59 Identities=27% Similarity=0.383 Sum_probs=43.4
Q ss_pred EEeeCHHHHHHHHHHhc---CCceEEeCCeEEEEE---eeCCeEEEEEcCCcEEeccEEEEecCCc
Q 006025 184 TRVISRMTLQQILAKAV---GDEIILNESNVIDFK---DHGDKVSVVLENGQCYAGDLLIGADGIW 243 (664)
Q Consensus 184 ~~~i~r~~l~~~L~~~~---~~~~i~~~~~v~~v~---~~~~~v~v~~~~g~~i~adlvVgADG~~ 243 (664)
+.++.-..-.++|.+.+ +. .++.+.+|+.+. +++..+.|.+.+|..+.|+-+|-+-|++
T Consensus 147 gGvi~a~kslk~~~~~~~~~G~-i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820|consen 147 GGVINAAKSLKALQDKARELGV-IFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred ccEeeHHHHHHHHHHHHHHcCe-EEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence 44565555555555544 43 477888888776 3456788999999999999999999985
No 143
>PRK10262 thioredoxin reductase; Provisional
Probab=98.17 E-value=9.6e-06 Score=84.85 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=32.3
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
...+||+||||||+||++|..|+++|++|+++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee
Confidence 45689999999999999999999999999999954
No 144
>PRK09897 hypothetical protein; Provisional
Probab=98.16 E-value=1.3e-05 Score=88.38 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=34.0
Q ss_pred eEEeCCeEEEEEeeCCeEEEEEcC-CcEEeccEEEEecCCc
Q 006025 204 IILNESNVIDFKDHGDKVSVVLEN-GQCYAGDLLIGADGIW 243 (664)
Q Consensus 204 ~i~~~~~v~~v~~~~~~v~v~~~~-g~~i~adlvVgADG~~ 243 (664)
.++.+++|++++.+++++.|++.+ |..+.+|.||.|+|..
T Consensus 125 ~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 125 AVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHV 165 (534)
T ss_pred EEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEEECCCCC
Confidence 466788999999988899998865 4789999999999963
No 145
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.16 E-value=1.6e-05 Score=83.13 Aligned_cols=46 Identities=26% Similarity=0.358 Sum_probs=37.1
Q ss_pred HHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecC
Q 006025 195 ILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADG 241 (664)
Q Consensus 195 ~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG 241 (664)
+..++++.. |..+.+|..|.+++++|+|++.+..++.+|++|++==
T Consensus 214 Afa~ql~~~-I~~~~~V~rI~q~~~gV~Vt~~~~~~~~ad~~i~tiP 259 (450)
T COG1231 214 AFAKQLGTR-ILLNEPVRRIDQDGDGVTVTADDVGQYVADYVLVTIP 259 (450)
T ss_pred HHHHHhhce-EEecCceeeEEEcCCeEEEEeCCcceEEecEEEEecC
Confidence 334444444 6778999999999999999999977899999998753
No 146
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.16 E-value=1.3e-05 Score=88.57 Aligned_cols=34 Identities=35% Similarity=0.640 Sum_probs=32.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
..|||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 36 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG 36 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4689999999999999999999999999999985
No 147
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.15 E-value=1e-05 Score=88.66 Aligned_cols=35 Identities=23% Similarity=0.441 Sum_probs=32.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+.+||+||||||+|+++|+.|+++|++|+|+|+.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 46899999999999999999999999999999864
No 148
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.14 E-value=4.5e-05 Score=86.46 Aligned_cols=35 Identities=37% Similarity=0.523 Sum_probs=32.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHc--CCeEEEEccCCc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~ 111 (664)
.+||+|||||+|||++|+.+++. |.+|+|+||...
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 57999999999999999999998 999999999754
No 149
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.14 E-value=3.3e-05 Score=85.81 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=31.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..||+|||+|.|||++|+.+++ |.+|+|+||.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 5699999999999999999986 999999999764
No 150
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.12 E-value=1.5e-05 Score=87.83 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=32.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+|||+||||||+|+.+|..|++.|++|+|+|+.+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~ 37 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS 37 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 46899999999999999999999999999999863
No 151
>PRK14694 putative mercuric reductase; Provisional
Probab=98.11 E-value=5.3e-05 Score=83.59 Aligned_cols=37 Identities=30% Similarity=0.459 Sum_probs=34.1
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 73 ~~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
+...++||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~ 38 (468)
T PRK14694 2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERG 38 (468)
T ss_pred CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 3456799999999999999999999999999999985
No 152
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.10 E-value=4.5e-05 Score=85.84 Aligned_cols=36 Identities=33% Similarity=0.533 Sum_probs=33.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||+|.|||++|+.+++.|.+|+|+||...
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 457999999999999999999999999999999753
No 153
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.09 E-value=5.6e-05 Score=85.42 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=33.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
++.||+|||+|+|||++|+.+++.|.+|+|+||...
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~ 37 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPV 37 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 456999999999999999999999999999998754
No 154
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.06 E-value=5e-06 Score=91.56 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=31.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
++|||+||||||+|+++|+.++++|++|+|+|++
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~ 35 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR 35 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3589999999999999999999999999999974
No 155
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.04 E-value=0.00014 Score=82.24 Aligned_cols=35 Identities=29% Similarity=0.539 Sum_probs=32.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+||+|||+|.|||++|+.+++.|.+|+|+||..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 45799999999999999999999999999999964
No 156
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.04 E-value=7.9e-06 Score=79.04 Aligned_cols=32 Identities=41% Similarity=0.653 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
||+|||||+||+.+|..|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998764
No 157
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.04 E-value=3.8e-05 Score=82.10 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchhhhhhh
Q 006025 191 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~vR~~l 250 (664)
.|.+.|.+.+... ++.+++|+.+..+..++.+.+.+|+.+.||-||-+- ....+-+.+
T Consensus 216 ~l~~al~~~l~~~-i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~-p~~~l~~ll 273 (444)
T COG1232 216 SLIEALAEKLEAK-IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTA-PLPELARLL 273 (444)
T ss_pred HHHHHHHHHhhhc-eeecceeeEEEEcCCccEEEEcCCceEEcceEEEcC-CHHHHHHHc
Confidence 3445555555555 788999999999888888999999999999999763 333444444
No 158
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.04 E-value=0.0001 Score=83.84 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=33.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||+|.|||++|+.+++.|.+|+|+||...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCC
Confidence 357999999999999999999999999999999753
No 159
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.03 E-value=0.00014 Score=82.52 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=33.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 357999999999999999999999999999999754
No 160
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.02 E-value=7.2e-05 Score=82.45 Aligned_cols=35 Identities=34% Similarity=0.580 Sum_probs=32.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..|||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 46899999999999999999999999999999863
No 161
>PLN02507 glutathione reductase
Probab=98.01 E-value=4.4e-05 Score=84.60 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=32.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (664)
..+|||+||||||+|+.+|..+++.|.+|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 4568999999999999999999999999999997
No 162
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.01 E-value=3.9e-05 Score=81.77 Aligned_cols=33 Identities=27% Similarity=0.469 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+|+|||||++|+.+|+.|+++|++|+|+|+++.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 799999999999999999999999999998654
No 163
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.98 E-value=0.00013 Score=82.96 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=33.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||+|.|||++|+.+++.|.+|+|+||...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence 357999999999999999999999999999999753
No 164
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.97 E-value=2.9e-05 Score=85.66 Aligned_cols=34 Identities=35% Similarity=0.572 Sum_probs=32.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
..+||+||||||+|+++|+.|+++|.+|+|+|+.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~ 36 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK 36 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 3589999999999999999999999999999985
No 165
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.97 E-value=9.3e-05 Score=81.76 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=31.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEcc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (664)
..+||+||||||+|+++|+.|++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 358999999999999999999999999999998
No 166
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.96 E-value=0.00012 Score=82.63 Aligned_cols=36 Identities=39% Similarity=0.668 Sum_probs=33.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||+|++|+++|+.++++|.+|+|+||...
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~ 43 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPV 43 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 467999999999999999999999999999999753
No 167
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.96 E-value=0.0002 Score=81.11 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=32.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+||+|||||+|||++|+.+++.|.+|+|+||..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 35799999999999999999999999999999975
No 168
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.92 E-value=0.00026 Score=79.68 Aligned_cols=35 Identities=29% Similarity=0.517 Sum_probs=33.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+||+|||+|.+||++|+.+++.|.+|+|+||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45799999999999999999999999999999986
No 169
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.91 E-value=0.00018 Score=81.00 Aligned_cols=37 Identities=32% Similarity=0.565 Sum_probs=33.8
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...+||+|||+|++|+++|+.+++.|.+|+|+||.+.
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~ 41 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPH 41 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3468999999999999999999999999999999753
No 170
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.90 E-value=1.1e-05 Score=89.23 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=33.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+.+||+|||||+.||++|..||++|++|+|+||+..
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~ 37 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDR 37 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCC
Confidence 458999999999999999999999999999998753
No 171
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.90 E-value=0.00015 Score=81.52 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=31.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+||+|||+|.||+++|+.+ +.|.+|+|+||.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~ 39 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL 39 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence 357999999999999999999 8999999999974
No 172
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.89 E-value=0.00012 Score=82.06 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=31.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||+|+|||++|+.+++. .+|+|+||...
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~ 41 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPL 41 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCC
Confidence 457999999999999999999987 89999999753
No 173
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.88 E-value=9e-05 Score=79.90 Aligned_cols=35 Identities=29% Similarity=0.605 Sum_probs=31.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCC--eEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~--~~~~~~~~~ 110 (664)
...+|+|||||+||+.+|..|+++|+ +|+|+++.+
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 34589999999999999999999987 799999874
No 174
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.88 E-value=0.00031 Score=79.43 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=31.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||||+|||++|+.+++. .+|+|+||...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCC
Confidence 357999999999999999999986 89999999753
No 175
>PRK08275 putative oxidoreductase; Provisional
Probab=97.87 E-value=0.00023 Score=80.14 Aligned_cols=36 Identities=39% Similarity=0.581 Sum_probs=32.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHc--CCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~ 111 (664)
..+||+|||||.|||++|+.+++. |.+|+|+||.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 357999999999999999999987 789999999864
No 176
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.87 E-value=0.00034 Score=79.11 Aligned_cols=35 Identities=23% Similarity=0.360 Sum_probs=32.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
.+||+|||+|.|||++|+.+++.|.+|+|+||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 57999999999999999999999999999999743
No 177
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.81 E-value=0.00041 Score=78.45 Aligned_cols=36 Identities=39% Similarity=0.595 Sum_probs=33.3
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...+||+|||+|++|+++|+.+++.|.+|+||||.+
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~ 45 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDP 45 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 346899999999999999999999999999999975
No 178
>PLN02815 L-aspartate oxidase
Probab=97.81 E-value=0.00018 Score=80.95 Aligned_cols=36 Identities=39% Similarity=0.613 Sum_probs=32.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...+||+|||+|.|||++|+.+++.| +|+|+||...
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~ 62 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEP 62 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCC
Confidence 34579999999999999999999999 9999999754
No 179
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.80 E-value=0.00023 Score=76.23 Aligned_cols=100 Identities=26% Similarity=0.410 Sum_probs=72.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+++++.+..... .++ +.+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~-------------------~~~----~~~------------ 185 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLAS-------------------LMP----PEV------------ 185 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccch-------------------hCC----HHH------------
Confidence 357999999999999999999999999999986421000 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
...+.+.|.+ .+ ..++.++++++++.+++.+.+++.+|+++.+|+|
T Consensus 186 --------------------------------~~~l~~~l~~-~g-V~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 231 (377)
T PRK04965 186 --------------------------------SSRLQHRLTE-MG-VHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAV 231 (377)
T ss_pred --------------------------------HHHHHHHHHh-CC-CEEEECCeEEEEEccCCEEEEEEcCCcEEECCEE
Confidence 0123333332 23 3467789999998877778888999999999999
Q ss_pred EEecCCchh
Q 006025 237 IGADGIWSK 245 (664)
Q Consensus 237 VgADG~~S~ 245 (664)
|.|.|..+.
T Consensus 232 I~a~G~~p~ 240 (377)
T PRK04965 232 IAAAGLRPN 240 (377)
T ss_pred EECcCCCcc
Confidence 999998653
No 180
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.79 E-value=0.00034 Score=79.99 Aligned_cols=36 Identities=31% Similarity=0.491 Sum_probs=33.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||||.|||.+|+.+++.|.+|+|+||.+.
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 457999999999999999999999999999998754
No 181
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=5.5e-05 Score=80.48 Aligned_cols=145 Identities=19% Similarity=0.313 Sum_probs=82.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccc------cCCCCcccceeeCchHHHHHHhcChhHHHHHHHhcc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI------RGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGC 149 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~------~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~ 149 (664)
..+||+|||||-||+.||++.||.|.++.++--+.... ...|....++ ..+.++.|| |+.....+...
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~-----lvrEIDALG-G~Mg~~~D~~~ 76 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGH-----LVREIDALG-GLMGKAADKAG 76 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccce-----eEEeehhcc-chHHHhhhhcC
Confidence 35899999999999999999999999999997653211 1111111111 123455665 44333333321
Q ss_pred ccCccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCe--EEEEE
Q 006025 150 VTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDK--VSVVL 225 (664)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~--v~v~~ 225 (664)
+. .++ .+...|. +.. ..-..++|....+.+.+.+.+ +.-.....|+++..+++. +-|.+
T Consensus 77 IQ-~r~---LN~sKGP----------AVr---a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t 139 (621)
T COG0445 77 IQ-FRM---LNSSKGP----------AVR---APRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVT 139 (621)
T ss_pred Cc-hhh---ccCCCcc----------hhc---chhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEe
Confidence 11 111 1111111 000 001134454555555444422 222345677887765553 45888
Q ss_pred cCCcEEeccEEEEecCCc
Q 006025 226 ENGQCYAGDLLIGADGIW 243 (664)
Q Consensus 226 ~~g~~i~adlvVgADG~~ 243 (664)
.+|..+.|+.||.+.|..
T Consensus 140 ~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 140 ADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCCCeeecCEEEEeeccc
Confidence 899999999999999975
No 182
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.76 E-value=0.00025 Score=76.58 Aligned_cols=103 Identities=28% Similarity=0.345 Sum_probs=76.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRI 155 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~ 155 (664)
-+..++|||||+.|+.+|..+++.|.+|+|+|+.+.... ..+ +++
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp--------------------~~D----~ei----------- 216 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP--------------------GED----PEI----------- 216 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC--------------------cCC----HHH-----------
Confidence 456899999999999999999999999999998753211 111 111
Q ss_pred cccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCc--EEec
Q 006025 156 NGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQ--CYAG 233 (664)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~--~i~a 233 (664)
...+.+.|.+ ....++.+++++.++..++++.+++++|+ ++++
T Consensus 217 ---------------------------------~~~~~~~l~~--~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~a 261 (454)
T COG1249 217 ---------------------------------SKELTKQLEK--GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEA 261 (454)
T ss_pred ---------------------------------HHHHHHHHHh--CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEe
Confidence 1123334433 33457889999999988777889998886 7999
Q ss_pred cEEEEecCCchhhhh
Q 006025 234 DLLIGADGIWSKVRK 248 (664)
Q Consensus 234 dlvVgADG~~S~vR~ 248 (664)
|.|+.|-|+.-.+-.
T Consensus 262 d~vLvAiGR~Pn~~~ 276 (454)
T COG1249 262 DAVLVAIGRKPNTDG 276 (454)
T ss_pred eEEEEccCCccCCCC
Confidence 999999998766543
No 183
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.76 E-value=0.00018 Score=80.58 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=31.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||+|.||+++|+.++ .|.+|+|+||.+.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~ 42 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTL 42 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCC
Confidence 4579999999999999999997 4999999999753
No 184
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.74 E-value=0.00032 Score=74.11 Aligned_cols=155 Identities=20% Similarity=0.296 Sum_probs=82.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCccccee--eCc-h--HHHHHHhc--Chh------------
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQ--IQS-N--ALAALEAI--DLD------------ 139 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~--l~~-~--~~~~L~~l--~~g------------ 139 (664)
||+|||+|+|||++|+.|++. ++|+|+-|.+......-...+++. +.+ . ...+-+.| |.|
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 999999987643211111122332 222 1 11122222 111
Q ss_pred ----HHHHHHHhccccCccccccccC-CCCceeeeccCCCcccccCCCeEEee-----CHHHHHHHHHHhcC---CceEE
Q 006025 140 ----VAEEVMRAGCVTGDRINGLVDG-ISGSWYIKFDTFTPAAEKGLPVTRVI-----SRMTLQQILAKAVG---DEIIL 206 (664)
Q Consensus 140 ----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i-----~r~~l~~~L~~~~~---~~~i~ 206 (664)
..+.+...|.. +|. ..+.+....+. +.....++ .=..+...|.+++. +..++
T Consensus 88 ~~~~ai~~Li~~Gv~--------FDr~~~g~~~lt~Eg-------gHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~ 152 (518)
T COG0029 88 EAPEAIEWLIDLGVP--------FDRDEDGRLHLTREG-------GHSRRRILHAADATGKEIMTALLKKVRNRPNITVL 152 (518)
T ss_pred hHHHHHHHHHHcCCC--------CcCCCCCceeeeeec-------ccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEE
Confidence 11122222211 111 11111111111 11111111 12356677777663 44577
Q ss_pred eCCeEEEEEeeCC-eE-EEEE--cCC--cEEeccEEEEecCCchhhhhh
Q 006025 207 NESNVIDFKDHGD-KV-SVVL--ENG--QCYAGDLLIGADGIWSKVRKN 249 (664)
Q Consensus 207 ~~~~v~~v~~~~~-~v-~v~~--~~g--~~i~adlvVgADG~~S~vR~~ 249 (664)
.++.+.++..+++ .+ -|.. .++ .++.++.||.|.|.-+.+=+.
T Consensus 153 e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~ 201 (518)
T COG0029 153 EGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAY 201 (518)
T ss_pred ecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecCCCcccccc
Confidence 7888888877777 33 2333 323 578999999999998765443
No 185
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.73 E-value=3.2e-05 Score=84.61 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=32.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+++||+||||||||+++|..|++.|++|+|+|+..
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 36899999999999999999999999999999874
No 186
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.72 E-value=0.00031 Score=77.50 Aligned_cols=100 Identities=22% Similarity=0.286 Sum_probs=72.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.... .++ .++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~d----~~~------------ 218 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS--------------------FLD----DEI------------ 218 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC--------------------cCC----HHH------------
Confidence 46899999999999999999999999999998642100 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
+..+.+.|.+ .+ ..++.+++|++++.+++++.+++.+|+++++|.|
T Consensus 219 --------------------------------~~~l~~~l~~-~g-I~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 264 (461)
T PRK05249 219 --------------------------------SDALSYHLRD-SG-VTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCL 264 (461)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEE
Confidence 0123333332 22 3477789999998777778888888889999999
Q ss_pred EEecCCchhh
Q 006025 237 IGADGIWSKV 246 (664)
Q Consensus 237 VgADG~~S~v 246 (664)
|.|.|.....
T Consensus 265 i~a~G~~p~~ 274 (461)
T PRK05249 265 LYANGRTGNT 274 (461)
T ss_pred EEeecCCccc
Confidence 9999987654
No 187
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.72 E-value=0.00019 Score=79.22 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=31.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
+|||+||||||+|+.+|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 489999999999999999999999999999974
No 188
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.72 E-value=0.00042 Score=78.53 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=29.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
|+|||+|+|||++|+.+++.|.+|+|+||..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999976
No 189
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.72 E-value=0.00017 Score=78.74 Aligned_cols=32 Identities=34% Similarity=0.591 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHc--CCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRK--GFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~ 110 (664)
+|+|||||++|+.+|..|++. +++|+|+|+.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 799999999999999999987 68999999975
No 190
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.71 E-value=3.5e-05 Score=84.30 Aligned_cols=39 Identities=36% Similarity=0.564 Sum_probs=34.8
Q ss_pred CCCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 73 SENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 73 ~~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...++++|+|||||+|||+||..|.+.|++|+|+|.+..
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdR 49 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDR 49 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCC
Confidence 345678999999999999999999999999999998653
No 191
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.71 E-value=0.00033 Score=77.21 Aligned_cols=33 Identities=45% Similarity=0.673 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.||+||||||+|+.+|..|+++|++|+|+|+..
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~ 34 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG 34 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 489999999999999999999999999999863
No 192
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.69 E-value=0.00049 Score=77.38 Aligned_cols=35 Identities=40% Similarity=0.620 Sum_probs=32.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+||+|||+|.+|+++|+.|++.|.+|+|+|+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~ 39 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQD 39 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 36799999999999999999999999999999974
No 193
>PRK06370 mercuric reductase; Validated
Probab=97.69 E-value=4e-05 Score=84.46 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=32.9
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
+.++||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~ 37 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG 37 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 45699999999999999999999999999999985
No 194
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.69 E-value=0.001 Score=75.15 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=32.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+||+|||+|++|+++|+.++++|++|+|+||..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~ 49 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTE 49 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 36799999999999999999999999999999875
No 195
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=7.6e-05 Score=76.42 Aligned_cols=81 Identities=22% Similarity=0.358 Sum_probs=68.7
Q ss_pred CCCEEecCCCCCCCCcceeEeCCCcccccceEEEEE---------------CCEEEEEECCCCceeEEeCCCCceeecCC
Q 006025 553 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK---------------DGAFYLIDLQSEHGTYVTDNEGRRYRVSS 617 (664)
Q Consensus 553 ~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~---------------~~~~~~~Dl~S~nGt~vn~~~~~~~~l~~ 617 (664)
++.+++||++. ||..+....+|..|-.|... ...+++.|. |+|||+||.. .+..
T Consensus 63 nd~f~fGR~~~-----~d~~ln~~~~s~~~~~i~~~~~~~~~~f~~dr~~~sn~~y~~Dh-S~nGT~VN~e-----~i~k 131 (475)
T KOG0615|consen 63 NDEFTFGRGDS-----CDAPLNLNNVSNKHFKILLYNKISKIHFRIDRDKNSNRVYLHDH-SRNGTFVNDE-----MIGK 131 (475)
T ss_pred cceEEecCCCc-----ccccccCccccccchheeeeeeeeeeeecccCCCccceEEEEec-ccCcccccHh-----Hhhc
Confidence 88999999999 88888888888888877432 356899996 9999999998 8999
Q ss_pred CCcEEeCCCCEEEECCCceeEEEEEEe
Q 006025 618 NFPARFRPSDTIEFGSDKKAIFRVKVI 644 (664)
Q Consensus 618 ~~~~~l~~gd~i~~g~~~~~~~~~~~~ 644 (664)
+....|+.||.|.+|-+....|.+...
T Consensus 132 ~~~r~lkN~dei~is~p~~~~~v~~~~ 158 (475)
T KOG0615|consen 132 GLSRILKNGDEISISIPALKIFVFEDL 158 (475)
T ss_pred cccccccCCCEEEeccchhheeeeecc
Confidence 999999999999999976666777654
No 196
>PRK14727 putative mercuric reductase; Provisional
Probab=97.66 E-value=0.00027 Score=78.23 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=32.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
.++||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~ 48 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGA 48 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc
Confidence 4689999999999999999999999999999986
No 197
>PRK06116 glutathione reductase; Validated
Probab=97.65 E-value=4.9e-05 Score=83.50 Aligned_cols=34 Identities=35% Similarity=0.531 Sum_probs=32.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
..+||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3589999999999999999999999999999985
No 198
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.65 E-value=0.00015 Score=79.60 Aligned_cols=32 Identities=38% Similarity=0.613 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKG--FEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~ 110 (664)
+|+|||||++|+++|..|++.| ++|+|||+.+
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 6999999999999999999975 5899999875
No 199
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.64 E-value=5e-05 Score=83.72 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=33.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+..+||+||||||+|+++|+.|+++|++|+|+|+..
T Consensus 3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~ 38 (461)
T PRK05249 3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYR 38 (461)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence 456999999999999999999999999999999853
No 200
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.64 E-value=4.7e-05 Score=83.44 Aligned_cols=33 Identities=36% Similarity=0.559 Sum_probs=31.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
+|||+||||||+|+++|+.|++.|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~ 34 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK 34 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc
Confidence 589999999999999999999999999999985
No 201
>PLN02546 glutathione reductase
Probab=97.64 E-value=0.00026 Score=79.16 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.9
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (664)
...|||+||||||+|+.+|..++++|.+|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3468999999999999999999999999999996
No 202
>PRK12839 hypothetical protein; Provisional
Probab=97.64 E-value=0.0011 Score=74.65 Aligned_cols=37 Identities=41% Similarity=0.583 Sum_probs=33.7
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...+||+|||+|++|+++|+.|++.|.+|+|+||...
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~ 42 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAST 42 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3468999999999999999999999999999999753
No 203
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.63 E-value=0.0012 Score=71.75 Aligned_cols=74 Identities=20% Similarity=0.355 Sum_probs=51.5
Q ss_pred EeeCHHHHHHHHHHhcCC--ceEEeCCeEEEEEeeCCe-EEEEEcCCcEEeccEEEEecCCchhhhhhhcCCCCcccc
Q 006025 185 RVISRMTLQQILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYS 259 (664)
Q Consensus 185 ~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~adlvVgADG~~S~vR~~l~~~~~~~~~ 259 (664)
..++...+.++|...+.. ..+..++.|+++....++ +.|.+..| .+++..+|.|.|.+-.--..+.+.+.+-+.
T Consensus 182 G~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G-~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p 258 (856)
T KOG2844|consen 182 GVMDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHG-SIETECVVNAAGVWAREVGAMAGVKVPLVP 258 (856)
T ss_pred cccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCc-ceecceEEechhHHHHHhhhhcCCccccee
Confidence 467888999999776532 246779999999765444 45666665 599999999999987544444444444333
No 204
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.63 E-value=0.00074 Score=75.19 Aligned_cols=34 Identities=29% Similarity=0.376 Sum_probs=30.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...||+|||+|.|||++|+.++ |.+|+|+||...
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3579999999999999999997 579999999764
No 205
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.63 E-value=0.00055 Score=74.76 Aligned_cols=60 Identities=15% Similarity=0.016 Sum_probs=40.4
Q ss_pred HHHHHHHHhcC--CceEEeCCeEEEEEee--CCeEE-EEEc-CCcEEeccEEEEecCCchhhhhhh
Q 006025 191 TLQQILAKAVG--DEIILNESNVIDFKDH--GDKVS-VVLE-NGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 191 ~l~~~L~~~~~--~~~i~~~~~v~~v~~~--~~~v~-v~~~-~g~~i~adlvVgADG~~S~vR~~l 250 (664)
.+.+.|.+.+. ...++++++|+++..+ ++.+. |... ++.+++|+.||.|.|..+.-+..+
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHH
Confidence 45566655442 2358889999999876 34443 3333 335899999999999887766544
No 206
>PRK07846 mycothione reductase; Reviewed
Probab=97.63 E-value=0.00052 Score=75.24 Aligned_cols=99 Identities=20% Similarity=0.316 Sum_probs=71.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+.... .++ .++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~--------------------~~d----~~~------------ 209 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR--------------------HLD----DDI------------ 209 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc--------------------ccC----HHH------------
Confidence 46899999999999999999999999999998642110 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
+..+.+.+ + .+ ..++.++++++++.+++++.+.+.+|+++++|.|
T Consensus 210 --------------------------------~~~l~~l~-~-~~-v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~v 254 (451)
T PRK07846 210 --------------------------------SERFTELA-S-KR-WDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVL 254 (451)
T ss_pred --------------------------------HHHHHHHH-h-cC-eEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEE
Confidence 00122211 1 12 3467789999998777778888888889999999
Q ss_pred EEecCCchhh
Q 006025 237 IGADGIWSKV 246 (664)
Q Consensus 237 VgADG~~S~v 246 (664)
|.|.|.....
T Consensus 255 l~a~G~~pn~ 264 (451)
T PRK07846 255 LVATGRVPNG 264 (451)
T ss_pred EEEECCccCc
Confidence 9999986543
No 207
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.63 E-value=0.00018 Score=71.12 Aligned_cols=176 Identities=18% Similarity=0.239 Sum_probs=91.4
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHc--CCeEEEEccCCcccc-----CCCCcccceeeCchHHHHHHhc-ChhHHHHHH
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAIR-----GEGQYRGPIQIQSNALAALEAI-DLDVAEEVM 145 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~~~~-----~~g~~~~~~~l~~~~~~~L~~l-~~g~~~~~~ 145 (664)
....+|++|||||++|++.|..|.-+ +.+|.|+|+...... ..|-...+|...|+++++---. |..+.-+..
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc 124 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYC 124 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHh
Confidence 44679999999999999999999887 999999999764322 1221223566777776541000 112222211
Q ss_pred HhccccCccccc--------------------cccCCCCceeee-ccC--CCccc----ccCCCeEEeeCHHHHHHHHHH
Q 006025 146 RAGCVTGDRING--------------------LVDGISGSWYIK-FDT--FTPAA----EKGLPVTRVISRMTLQQILAK 198 (664)
Q Consensus 146 ~~~~~~~~~~~~--------------------~~~~~~~~~~~~-~~~--~~~~~----~~~~~~~~~i~r~~l~~~L~~ 198 (664)
+.-.++....-. ..++.++-..+. ++. ..+.. ..-.|....++...+...+.+
T Consensus 125 ~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sPhtGIvD~~~v~ls~~e 204 (453)
T KOG2665|consen 125 DEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSPHTGIVDWGSVTLSFGE 204 (453)
T ss_pred hhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCCCcceeehHHHHHHHHH
Confidence 111111000000 001111100000 000 00000 001123334555554444433
Q ss_pred h---cCCceEEeCCeEEEEEeeCCe-----EEEEEcCCcEEeccEEEEecCCchhhhhhh
Q 006025 199 A---VGDEIILNESNVIDFKDHGDK-----VSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 199 ~---~~~~~i~~~~~v~~v~~~~~~-----v~v~~~~g~~i~adlvVgADG~~S~vR~~l 250 (664)
. .+. .+..+-++..+.++.+. ++|.-..+++++.++||.|.|-.|---..+
T Consensus 205 dF~~~gg-~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr~aa~ 263 (453)
T KOG2665|consen 205 DFDFMGG-RIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDRCAAL 263 (453)
T ss_pred HHHHhcc-cccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhHHHHH
Confidence 3 222 35667788888766543 444444578999999999999988654444
No 208
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.62 E-value=0.00065 Score=73.28 Aligned_cols=99 Identities=25% Similarity=0.351 Sum_probs=69.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+..... .++ +++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-------------------~~~----~~~------------ 188 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR-------------------NAP----PPV------------ 188 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh-------------------hcC----HHH------------
Confidence 357999999999999999999999999999986421000 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
...+.+.+.+ .+ ..++.+++|++++. ++.+.+++.+|+++.+|+|
T Consensus 189 --------------------------------~~~l~~~l~~-~G-V~i~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~V 233 (396)
T PRK09754 189 --------------------------------QRYLLQRHQQ-AG-VRILLNNAIEHVVD-GEKVELTLQSGETLQADVV 233 (396)
T ss_pred --------------------------------HHHHHHHHHH-CC-CEEEeCCeeEEEEc-CCEEEEEECCCCEEECCEE
Confidence 0012222222 22 34677889998876 5567788889999999999
Q ss_pred EEecCCchh
Q 006025 237 IGADGIWSK 245 (664)
Q Consensus 237 VgADG~~S~ 245 (664)
|.|.|....
T Consensus 234 v~a~G~~pn 242 (396)
T PRK09754 234 IYGIGISAN 242 (396)
T ss_pred EECCCCChh
Confidence 999998654
No 209
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.62 E-value=0.00038 Score=75.73 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=31.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+.+|||||||.+|+.+|..|.+.+++|+|||+++
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCC
Confidence 45689999999999999999988789999999864
No 210
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.62 E-value=0.0016 Score=73.18 Aligned_cols=37 Identities=38% Similarity=0.611 Sum_probs=33.2
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
....+||||||+| +|+++|+.+++.|.+|+|+||.+.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~ 49 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSY 49 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 3457899999999 899999999999999999999753
No 211
>PRK07208 hypothetical protein; Provisional
Probab=97.61 E-value=6e-05 Score=83.58 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=33.6
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
++.+||+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~ 38 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPV 38 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 4567999999999999999999999999999998753
No 212
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.61 E-value=0.0005 Score=78.02 Aligned_cols=33 Identities=30% Similarity=0.646 Sum_probs=31.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
.|||+|||+||+|..+|+.+++.|.+|+|||++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 689999999999999999999999999999974
No 213
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.59 E-value=0.0003 Score=76.07 Aligned_cols=36 Identities=33% Similarity=0.496 Sum_probs=33.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+..||++|||+||+|..+|..+++.|.+|.++|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecC
Confidence 357999999999999999999999999999999974
No 214
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.59 E-value=8.5e-05 Score=87.15 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=33.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..++|+|||||||||++|..|++.|++|+|+|+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999998753
No 215
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.59 E-value=0.0012 Score=80.43 Aligned_cols=37 Identities=32% Similarity=0.587 Sum_probs=33.9
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
....||||||+|.||+++|+.+++.|.+|+|+||.+.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~ 443 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAK 443 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCC
Confidence 4568999999999999999999999999999999753
No 216
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.58 E-value=5.9e-05 Score=82.63 Aligned_cols=33 Identities=30% Similarity=0.453 Sum_probs=31.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
+|||+||||||+|+++|+.++++|++|+|+|+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 589999999999999999999999999999985
No 217
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.57 E-value=0.0012 Score=72.79 Aligned_cols=32 Identities=31% Similarity=0.575 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|+||||||+|+++|..|++.|.+|+|+||..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 79999999999999999999999999999863
No 218
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.55 E-value=0.00012 Score=79.99 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=32.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHH--cCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKR--KGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~--~g~~~~~~~~~~~ 111 (664)
..++|+||||||||+++|..|++ .|++|+|||+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCC
Confidence 45789999999999999999997 7999999999763
No 219
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.54 E-value=0.00057 Score=71.66 Aligned_cols=149 Identities=17% Similarity=0.194 Sum_probs=69.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcC-CeEEEEccCCccccCCCCcccceeeCchHH--HHHHhcChhHHHHHHHhcccc-C
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNAL--AALEAIDLDVAEEVMRAGCVT-G 152 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~--~~L~~l~~g~~~~~~~~~~~~-~ 152 (664)
.+|+++||.||++|++|++|...+ .++..+|+.+......| ..+....+ ..|+.|- ....+. .
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~g-----mll~~~~~q~~fl~Dlv--------t~~~P~s~ 68 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPG-----MLLPGARMQVSFLKDLV--------TLRDPTSP 68 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGG-----G--SS-B-SS-TTSSSS--------TTT-TTST
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCc-----cCCCCCccccccccccC--------cCcCCCCc
Confidence 479999999999999999999887 89999998764432222 11111000 0011110 000000 0
Q ss_pred ccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHH---hcCCceEEeCCeEEEEEeeCC----eEEEEE
Q 006025 153 DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAK---AVGDEIILNESNVIDFKDHGD----KVSVVL 225 (664)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~---~~~~~~i~~~~~v~~v~~~~~----~v~v~~ 225 (664)
..+..+... .+. ...| ...+ ...+.|.++.+.|.- ++... ++++.+|++|+..++ .++|+.
T Consensus 69 ~sflnYL~~-~~r-l~~f------~~~~---~~~p~R~ef~dYl~Wva~~~~~~-v~~~~~V~~I~~~~~~~~~~~~V~~ 136 (341)
T PF13434_consen 69 FSFLNYLHE-HGR-LYEF------YNRG---YFFPSRREFNDYLRWVAEQLDNQ-VRYGSEVTSIEPDDDGDEDLFRVTT 136 (341)
T ss_dssp TSHHHHHHH-TT--HHHH------HHH-----SS-BHHHHHHHHHHHHCCGTTT-EEESEEEEEEEEEEETTEEEEEEEE
T ss_pred ccHHHHHHH-cCC-hhhh------hhcC---CCCCCHHHHHHHHHHHHHhCCCc-eEECCEEEEEEEecCCCccEEEEEE
Confidence 000000000 000 0000 0000 123567777666644 44433 778999999987654 477877
Q ss_pred c----CCcEEeccEEEEecCCchhhhhhh
Q 006025 226 E----NGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 226 ~----~g~~i~adlvVgADG~~S~vR~~l 250 (664)
. +++++.|+-||.|.|..-.+...+
T Consensus 137 ~~~~g~~~~~~ar~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 137 RDSDGDGETYRARNVVLATGGQPRIPEWF 165 (341)
T ss_dssp EETTS-EEEEEESEEEE----EE---GGG
T ss_pred eecCCCeeEEEeCeEEECcCCCCCCCcch
Confidence 3 346899999999999665555554
No 220
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.54 E-value=5.3e-05 Score=83.32 Aligned_cols=38 Identities=32% Similarity=0.502 Sum_probs=34.1
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
....++|+||||||+|+++|..|+++|++|+|+|+.+.
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~ 174 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDK 174 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 34567999999999999999999999999999998753
No 221
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.54 E-value=0.00082 Score=74.10 Aligned_cols=99 Identities=27% Similarity=0.337 Sum_probs=70.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||++|+.+|..|++.|.+|+++|+.+.... .++ +++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~~----~~~------------ 215 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP--------------------GED----KEI------------ 215 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC--------------------cCC----HHH------------
Confidence 36899999999999999999999999999998642110 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCC---cEEec
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG---QCYAG 233 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g---~~i~a 233 (664)
...+.+.|.+ .+ ..++.+++|++++.+++.+.+.+.++ +++.+
T Consensus 216 --------------------------------~~~l~~~l~~-~g-V~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~ 261 (462)
T PRK06416 216 --------------------------------SKLAERALKK-RG-IKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEA 261 (462)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEe
Confidence 0122333332 23 34778999999988777888877766 67999
Q ss_pred cEEEEecCCchh
Q 006025 234 DLLIGADGIWSK 245 (664)
Q Consensus 234 dlvVgADG~~S~ 245 (664)
|.||.|.|....
T Consensus 262 D~vi~a~G~~p~ 273 (462)
T PRK06416 262 DYVLVAVGRRPN 273 (462)
T ss_pred CEEEEeeCCccC
Confidence 999999998654
No 222
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00011 Score=73.16 Aligned_cols=50 Identities=24% Similarity=0.505 Sum_probs=39.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAI 136 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l 136 (664)
++||+|||||.||+++|+.|+++|.++.|+-+... ++..+..++.+|-++
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQs----------ALhfsSGslDlL~~l 51 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQS----------ALHFSSGSLDLLGRL 51 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCChh----------hhhcccccHHHhhcC
Confidence 58999999999999999999999999999987643 233444555555555
No 223
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.53 E-value=0.00057 Score=66.94 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=32.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcC------CeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKG------FEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g------~~~~~~~~~~~ 111 (664)
...+|+|||||+.|..+|+.|++++ +.++|+|.+.-
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I 50 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI 50 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc
Confidence 4478999999999999999999998 89999998753
No 224
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.53 E-value=0.0015 Score=69.08 Aligned_cols=61 Identities=16% Similarity=0.143 Sum_probs=45.5
Q ss_pred EeeCHHHHHHHHHHhcC---CceEEeCCeEEEEEeeCCe-EEEEEcC---C--cEEeccEEEEecCCchh
Q 006025 185 RVISRMTLQQILAKAVG---DEIILNESNVIDFKDHGDK-VSVVLEN---G--QCYAGDLLIGADGIWSK 245 (664)
Q Consensus 185 ~~i~r~~l~~~L~~~~~---~~~i~~~~~v~~v~~~~~~-v~v~~~~---g--~~i~adlvVgADG~~S~ 245 (664)
.-|+-..|-+.|.+.+. +..++++++|++++..+++ |.|+..+ | .+++|++|+..-|.+|.
T Consensus 176 TDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 176 TDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred ccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence 34566677777766652 3368899999999998776 8887643 2 57999999888887775
No 225
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.52 E-value=0.0001 Score=85.08 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=33.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...++|+||||||||+++|+.|++.||+|+|+|+.+
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 456899999999999999999999999999999853
No 226
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.52 E-value=9e-05 Score=82.42 Aligned_cols=34 Identities=29% Similarity=0.582 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
.||+|||||++||++|..|+++|++|+|+|++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5899999999999999999999999999999854
No 227
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=8.8e-05 Score=79.17 Aligned_cols=35 Identities=29% Similarity=0.594 Sum_probs=32.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCcc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~ 112 (664)
++|+|+|||+|||++|..|+.+|++|+|+|+++..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~ 35 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRL 35 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCcc
Confidence 37999999999999999999999999999998643
No 228
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.51 E-value=9.2e-05 Score=82.27 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCC--ceEEeCCeEEEEEeeCCe-EEEEEcCCcEEeccEEEEecCCchhhhhhh
Q 006025 191 TLQQILAKAVGD--EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 191 ~l~~~L~~~~~~--~~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~adlvVgADG~~S~vR~~l 250 (664)
.+.+.|.+.+.. ..++.+++|++|..++++ +.|++.+|++++||.||.|-|....+++.+
T Consensus 230 ~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll 292 (493)
T TIGR02730 230 QIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFGKLL 292 (493)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHHHhC
Confidence 455556555422 358889999999876554 457788898999999999999988887765
No 229
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.51 E-value=0.00014 Score=83.40 Aligned_cols=56 Identities=25% Similarity=0.319 Sum_probs=42.6
Q ss_pred CcccccccccccCCCCCCCCCCCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 53 SKNPTQMKAAVAESPTNNSDSENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+.|. ++|..+. ......+.....+|+|||||++|+++|+.|++.|++|+|+|++..
T Consensus 217 in~g--v~~~~~~-~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r 272 (808)
T PLN02328 217 INFG--VAPVIKE-AQLRSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRAR 272 (808)
T ss_pred eeee--ccccccc-cccCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecccc
Confidence 4555 6666552 222333445568999999999999999999999999999999753
No 230
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.50 E-value=0.001 Score=73.39 Aligned_cols=101 Identities=25% Similarity=0.320 Sum_probs=72.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.... .++ .++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--------------------~~~----~~~------------ 213 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP--------------------GED----AEV------------ 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC--------------------CCC----HHH------------
Confidence 46899999999999999999999999999998642100 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCC--cEEecc
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG--QCYAGD 234 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g--~~i~ad 234 (664)
...+.+.|.+ .+ ..++.+++|++++.+++++.+.+.+| +++.+|
T Consensus 214 --------------------------------~~~~~~~l~~-~g-i~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D 259 (461)
T TIGR01350 214 --------------------------------SKVVAKALKK-KG-VKILTNTKVTAVEKNDDQVVYENKGGETETLTGE 259 (461)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeC
Confidence 0122233332 23 34778999999988777888877777 579999
Q ss_pred EEEEecCCchhhh
Q 006025 235 LLIGADGIWSKVR 247 (664)
Q Consensus 235 lvVgADG~~S~vR 247 (664)
.||.|.|..+.+.
T Consensus 260 ~vi~a~G~~p~~~ 272 (461)
T TIGR01350 260 KVLVAVGRKPNTE 272 (461)
T ss_pred EEEEecCCcccCC
Confidence 9999999876543
No 231
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.50 E-value=0.016 Score=62.21 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=50.8
Q ss_pred EeeCHHHHHHHHHHhcCC-ceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchh
Q 006025 185 RVISRMTLQQILAKAVGD-EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 185 ~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~ 245 (664)
..++...+...|.+.+.. ..++.+++|++++.+++++.|++.+|++++||.||.|.|.++.
T Consensus 130 g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 130 GWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191 (381)
T ss_pred cccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEEcCEEEEcCCcccc
Confidence 467778888888876543 3578899999999888888898888888999999999999874
No 232
>PRK06116 glutathione reductase; Validated
Probab=97.50 E-value=0.00097 Score=73.24 Aligned_cols=99 Identities=25% Similarity=0.318 Sum_probs=70.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||++|+.+|..|++.|.+|+++++.+.... .++ .++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--------------------~~~----~~~------------ 210 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR--------------------GFD----PDI------------ 210 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc--------------------ccC----HHH------------
Confidence 46899999999999999999999999999997642110 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCe-EEEEEcCCcEEeccE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDL 235 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~adl 235 (664)
+..+.+.|.+ .+ ..++.+++|.+++.++++ +.+.+.+|+++++|.
T Consensus 211 --------------------------------~~~l~~~L~~-~G-V~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~ 256 (450)
T PRK06116 211 --------------------------------RETLVEEMEK-KG-IRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDC 256 (450)
T ss_pred --------------------------------HHHHHHHHHH-CC-cEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCE
Confidence 0122233322 12 347788999999876555 778888899999999
Q ss_pred EEEecCCchh
Q 006025 236 LIGADGIWSK 245 (664)
Q Consensus 236 vVgADG~~S~ 245 (664)
||.|.|....
T Consensus 257 Vv~a~G~~p~ 266 (450)
T PRK06116 257 LIWAIGREPN 266 (450)
T ss_pred EEEeeCCCcC
Confidence 9999997644
No 233
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.49 E-value=0.011 Score=62.09 Aligned_cols=61 Identities=25% Similarity=0.389 Sum_probs=47.2
Q ss_pred EEeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEE-EEEcCCcEEeccEEEEecCCchh
Q 006025 184 TRVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLENGQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 184 ~~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~~g~~i~adlvVgADG~~S~ 245 (664)
...++-..|...|.+.+. ...++.+++|++++.+++++. |...+| +++||.||.|.|+++.
T Consensus 131 ~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 131 DAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSG-DVQADQVVLAAGAWAG 194 (337)
T ss_pred CceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCC-EEECCEEEEcCChhhh
Confidence 346777888888877653 235788999999998777764 555555 8999999999999875
No 234
>PRK07233 hypothetical protein; Provisional
Probab=97.48 E-value=0.0001 Score=80.60 Aligned_cols=53 Identities=23% Similarity=0.079 Sum_probs=40.2
Q ss_pred HHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCch
Q 006025 192 LQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (664)
Q Consensus 192 l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S 244 (664)
|.+.|.+.+. ...++.+++|++++.+++++++...++++++||.||.|-..+.
T Consensus 200 l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p~~~ 254 (434)
T PRK07233 200 LIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAPPPI 254 (434)
T ss_pred HHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCCHHH
Confidence 4455555442 2358899999999988888776667788999999999988754
No 235
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.46 E-value=0.00012 Score=86.58 Aligned_cols=35 Identities=40% Similarity=0.462 Sum_probs=32.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..++|+|||||||||++|..|++.||+|+|||+..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 46899999999999999999999999999999874
No 236
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.46 E-value=0.0023 Score=76.15 Aligned_cols=36 Identities=39% Similarity=0.567 Sum_probs=33.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999999764
No 237
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.45 E-value=0.00012 Score=80.63 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=32.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
..+||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4589999999999999999999999999999984
No 238
>PLN02507 glutathione reductase
Probab=97.44 E-value=0.0014 Score=72.79 Aligned_cols=100 Identities=22% Similarity=0.338 Sum_probs=72.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+.+.. .++ +++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~--------------------~~d----~~~------------ 246 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLR--------------------GFD----DEM------------ 246 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCc--------------------ccC----HHH------------
Confidence 45899999999999999999999999999997642110 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
+..+.+.|.+ .+ ..++.+++|++++.+++++.+.+.+|+++++|+|
T Consensus 247 --------------------------------~~~l~~~l~~-~G-I~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~v 292 (499)
T PLN02507 247 --------------------------------RAVVARNLEG-RG-INLHPRTNLTQLTKTEGGIKVITDHGEEFVADVV 292 (499)
T ss_pred --------------------------------HHHHHHHHHh-CC-CEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEE
Confidence 0122333322 22 3477889999998777778888888889999999
Q ss_pred EEecCCchhh
Q 006025 237 IGADGIWSKV 246 (664)
Q Consensus 237 VgADG~~S~v 246 (664)
|.|-|.....
T Consensus 293 l~a~G~~pn~ 302 (499)
T PLN02507 293 LFATGRAPNT 302 (499)
T ss_pred EEeecCCCCC
Confidence 9999986544
No 239
>PLN02576 protoporphyrinogen oxidase
Probab=97.44 E-value=0.00013 Score=81.19 Aligned_cols=36 Identities=36% Similarity=0.472 Sum_probs=32.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHc-CCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~~~~ 111 (664)
..+||+|||||++||++|+.|++. |++|+|+|+...
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~r 47 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDR 47 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 456899999999999999999999 999999999753
No 240
>PRK12831 putative oxidoreductase; Provisional
Probab=97.44 E-value=0.00015 Score=79.53 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.3
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...+||+||||||+|+++|..|++.|++|+|+|+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 456899999999999999999999999999999864
No 241
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.44 E-value=0.0012 Score=72.34 Aligned_cols=98 Identities=23% Similarity=0.342 Sum_probs=70.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+++|+.+... ..++ +++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll--------------------~~~d----~~~------------ 212 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL--------------------RHLD----EDI------------ 212 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc--------------------cccC----HHH------------
Confidence 4689999999999999999999999999999753210 0010 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
+..+.+.+ + .+ ..++.+++|++++.+++++.+++.+|+++++|.|
T Consensus 213 --------------------------------~~~l~~~~-~-~g-I~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~v 257 (452)
T TIGR03452 213 --------------------------------SDRFTEIA-K-KK-WDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVL 257 (452)
T ss_pred --------------------------------HHHHHHHH-h-cC-CEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEE
Confidence 00122211 1 12 3477889999998777778888888889999999
Q ss_pred EEecCCchh
Q 006025 237 IGADGIWSK 245 (664)
Q Consensus 237 VgADG~~S~ 245 (664)
|.|.|....
T Consensus 258 l~a~G~~pn 266 (452)
T TIGR03452 258 LVATGRVPN 266 (452)
T ss_pred EEeeccCcC
Confidence 999997654
No 242
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.42 E-value=3.9e-05 Score=81.23 Aligned_cols=53 Identities=6% Similarity=0.012 Sum_probs=42.6
Q ss_pred CccccccCCCCCccccCCcccccccccccccccccccccCCCcccccccccccCC
Q 006025 12 LSTAVFSRTHFPVPVYKHSCIEFSRYDHCINYKFRTGTSGQSKNPTQMKAAVAES 66 (664)
Q Consensus 12 ~~~~~~~~~~~~~k~~~~~~~~i~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (664)
..-.+++||+|++|+++|+.++|++|++|++|...........|. +||..++|
T Consensus 318 ~gR~~ladP~l~~k~~~g~~~~i~~Ci~Cn~C~~~~~~~~~~~C~--vNp~~g~e 370 (370)
T cd02929 318 AARPSIADPFLPKKIREGRIDDIRECIGCNICISGDEGGVPMRCT--QNPTAGEE 370 (370)
T ss_pred echHhhhCchHHHHHHcCCccccccCCchhhhhccccCCCCceec--cCccccCC
Confidence 556789999999999999999999999999965554433345666 99998864
No 243
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.41 E-value=0.00015 Score=80.03 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
|||+||||||+|+++|..|+++|++|+|+|+..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999863
No 244
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00038 Score=69.76 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=29.6
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEE
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVF 106 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~ 106 (664)
....|||+||||||||.++|+..||+|++.-|+
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ 240 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhh
Confidence 445799999999999999999999999987665
No 245
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.39 E-value=0.00018 Score=76.06 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+||+|||||++|+++|..|++.|.+|+|+|++.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 699999999999999999999999999999864
No 246
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.38 E-value=0.00016 Score=79.74 Aligned_cols=32 Identities=41% Similarity=0.710 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
|||+||||||+|+++|+.|+++|++|+|+|+.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 79999999999999999999999999999983
No 247
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.37 E-value=0.0019 Score=71.14 Aligned_cols=100 Identities=25% Similarity=0.383 Sum_probs=71.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||..|+.+|..|++.|.+|+++++.+..... .+ .++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~--------------------~d----~~~------------ 220 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG--------------------ED----ADA------------ 220 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC--------------------CC----HHH------------
Confidence 358999999999999999999999999999976421100 00 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
+..+.+.|.+ .+ ..++.++++++++.+++++.+.+.+|+++++|.|
T Consensus 221 --------------------------------~~~l~~~L~~-~g-V~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~v 266 (466)
T PRK07845 221 --------------------------------AEVLEEVFAR-RG-MTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHA 266 (466)
T ss_pred --------------------------------HHHHHHHHHH-CC-cEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEE
Confidence 0122333332 22 3467789999998777788888888999999999
Q ss_pred EEecCCchhh
Q 006025 237 IGADGIWSKV 246 (664)
Q Consensus 237 VgADG~~S~v 246 (664)
|.|.|.....
T Consensus 267 l~a~G~~pn~ 276 (466)
T PRK07845 267 LMAVGSVPNT 276 (466)
T ss_pred EEeecCCcCC
Confidence 9999986554
No 248
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.37 E-value=0.00095 Score=70.74 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=34.2
Q ss_pred eEEeCCeEEEEEee--CCeEEEEEcCCcEEeccEEEEecCCchhhhhh
Q 006025 204 IILNESNVIDFKDH--GDKVSVVLENGQCYAGDLLIGADGIWSKVRKN 249 (664)
Q Consensus 204 ~i~~~~~v~~v~~~--~~~v~v~~~~g~~i~adlvVgADG~~S~vR~~ 249 (664)
+.+...+.+++... ..+..++..+|....||.+|.|.|..-+....
T Consensus 122 v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatgh~~~~~~~ 169 (474)
T COG4529 122 VRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATGHSAPPADP 169 (474)
T ss_pred eeEEeeeeecceeccCCceEEEecCCCCeeeeeEEEEeccCCCCCcch
Confidence 34456777777766 56678888999999999999999965444433
No 249
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.36 E-value=0.00023 Score=76.67 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=31.7
Q ss_pred CcCcEEEECCCHHHHHHHHHH-HHcCCeEEEEccCCcc
Q 006025 76 KKLRILVAGGGIGGLVFALAA-KRKGFEVLVFEKDMSA 112 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l-~~~g~~~~~~~~~~~~ 112 (664)
..++|+||||||||+.+|..| ++.|++|+|||+.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p 75 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP 75 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 456899999999999999965 5779999999998643
No 250
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.36 E-value=0.0036 Score=62.82 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=32.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHc----CCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~----g~~~~~~~~~~~ 111 (664)
.+.||+|||||..|++.|++|.++ |++|+|+||+..
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 367999999999999999999764 799999999864
No 251
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.35 E-value=0.00015 Score=80.85 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=45.5
Q ss_pred HHHHHHHHHhcC--CceEEeCCeEEEEEeeCCe-EEEEEcCCcEEeccEEEEecCCchhhhhhh
Q 006025 190 MTLQQILAKAVG--DEIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 190 ~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~adlvVgADG~~S~vR~~l 250 (664)
..+.+.|.+.+. ...++.++.|+++..++++ +.|++++|++++||.||.|-+....+.+.+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhc
Confidence 345555555442 2358889999999877766 568888898999999999988877776654
No 252
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.34 E-value=0.00028 Score=77.25 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=33.3
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...++|+||||||+|+++|..|+++|++|+|+|+.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 456899999999999999999999999999999864
No 253
>PLN02268 probable polyamine oxidase
Probab=97.33 E-value=0.0002 Score=78.26 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=35.0
Q ss_pred eEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCC
Q 006025 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 242 (664)
Q Consensus 204 ~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~ 242 (664)
.++++++|++|+..+++++|++.+|+++.||.||.|.-.
T Consensus 212 ~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~VIva~P~ 250 (435)
T PLN02268 212 DIRLNHRVTKIVRRYNGVKVTVEDGTTFVADAAIIAVPL 250 (435)
T ss_pred ceeCCCeeEEEEEcCCcEEEEECCCcEEEcCEEEEecCH
Confidence 488899999999998999999999989999999999744
No 254
>PTZ00058 glutathione reductase; Provisional
Probab=97.33 E-value=0.00028 Score=78.86 Aligned_cols=35 Identities=37% Similarity=0.547 Sum_probs=32.8
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
..++||+||||||+|.++|..+++.|.+|+|+|+.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~ 80 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD 80 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc
Confidence 35689999999999999999999999999999986
No 255
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.33 E-value=0.00024 Score=83.15 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=33.6
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...++|+||||||||+++|..|++.|++|+|+|+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence 3467999999999999999999999999999998753
No 256
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.32 E-value=0.0022 Score=70.24 Aligned_cols=99 Identities=22% Similarity=0.325 Sum_probs=70.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||++|+.+|..|++.|.+|+|+++.+.... .++ +++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~--------------------~~d----~~~------------ 209 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILR--------------------GFD----DDM------------ 209 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCc--------------------ccC----HHH------------
Confidence 45799999999999999999999999999997532100 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
+..+.+.|.+ .+ ..++.+++|++++.+++++.+++.+|+++.+|.|
T Consensus 210 --------------------------------~~~l~~~l~~-~g-V~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~v 255 (446)
T TIGR01424 210 --------------------------------RALLARNMEG-RG-IRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVV 255 (446)
T ss_pred --------------------------------HHHHHHHHHH-CC-CEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEE
Confidence 0122233332 22 3477789999998777777788888889999999
Q ss_pred EEecCCchh
Q 006025 237 IGADGIWSK 245 (664)
Q Consensus 237 VgADG~~S~ 245 (664)
|.|-|....
T Consensus 256 iva~G~~pn 264 (446)
T TIGR01424 256 LFATGRSPN 264 (446)
T ss_pred EEeeCCCcC
Confidence 999997543
No 257
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.31 E-value=0.0023 Score=70.24 Aligned_cols=100 Identities=19% Similarity=0.203 Sum_probs=69.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||..|+.+|..|++.|.+|+|+++.+.... .++ +++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~--------------------~~d----~~~------------ 209 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR--------------------SFD----SMI------------ 209 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc--------------------ccC----HHH------------
Confidence 46899999999999999999999999999998642110 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCe-EEEEEcCC-cEEecc
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENG-QCYAGD 234 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~-v~v~~~~g-~~i~ad 234 (664)
+..+.+.|.+ .+ ..++.+++|++++.++++ +.+++++| +.+.+|
T Consensus 210 --------------------------------~~~~~~~l~~-~g-I~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D 255 (450)
T TIGR01421 210 --------------------------------SETITEEYEK-EG-INVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVD 255 (450)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcC
Confidence 0122333322 12 347778899999865443 67778788 579999
Q ss_pred EEEEecCCchhh
Q 006025 235 LLIGADGIWSKV 246 (664)
Q Consensus 235 lvVgADG~~S~v 246 (664)
.||.|-|.....
T Consensus 256 ~vi~a~G~~pn~ 267 (450)
T TIGR01421 256 ELIWAIGRKPNT 267 (450)
T ss_pred EEEEeeCCCcCc
Confidence 999999976543
No 258
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.30 E-value=0.00025 Score=74.18 Aligned_cols=35 Identities=40% Similarity=0.672 Sum_probs=32.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+|+|||||+||+++|+.|++.|++|.++||.+.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 46899999999999999999999999999999863
No 259
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.30 E-value=0.0027 Score=69.92 Aligned_cols=99 Identities=21% Similarity=0.298 Sum_probs=67.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||++|+.+|..|++.|.+|+|+++.+.... ..+ .++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~--------------------~~d----~e~------------ 213 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP--------------------GED----EDI------------ 213 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc--------------------ccc----HHH------------
Confidence 35899999999999999999999999999998632100 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCC--cEEecc
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG--QCYAGD 234 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g--~~i~ad 234 (664)
+..+.+.|.+ .+ ..++.+++|++++.++..+.+.. +| +++++|
T Consensus 214 --------------------------------~~~l~~~L~~-~G-I~i~~~~~V~~i~~~~~~v~~~~-~g~~~~i~~D 258 (458)
T PRK06912 214 --------------------------------AHILREKLEN-DG-VKIFTGAALKGLNSYKKQALFEY-EGSIQEVNAE 258 (458)
T ss_pred --------------------------------HHHHHHHHHH-CC-CEEEECCEEEEEEEcCCEEEEEE-CCceEEEEeC
Confidence 1123333332 22 34778899999987665555543 34 369999
Q ss_pred EEEEecCCchhh
Q 006025 235 LLIGADGIWSKV 246 (664)
Q Consensus 235 lvVgADG~~S~v 246 (664)
+||.|.|....+
T Consensus 259 ~vivA~G~~p~~ 270 (458)
T PRK06912 259 FVLVSVGRKPRV 270 (458)
T ss_pred EEEEecCCccCC
Confidence 999999987664
No 260
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.30 E-value=0.0014 Score=69.95 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=28.2
Q ss_pred cEEEECCCHHHHHHHHHHHHc---CCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRK---GFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~---g~~~~~~~~~~ 110 (664)
+|+|||||++|+.+|..|.++ +++|+|+|++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~ 35 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSS 35 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCC
Confidence 489999999999999999644 78999999874
No 261
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.30 E-value=0.002 Score=71.05 Aligned_cols=100 Identities=28% Similarity=0.286 Sum_probs=69.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.... .++ +++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~--------------------~~d----~~~------------ 217 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP--------------------AAD----KDI------------ 217 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC--------------------cCC----HHH------------
Confidence 36899999999999999999999999999998642110 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCC----cEEe
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG----QCYA 232 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g----~~i~ 232 (664)
+..+.+.|.+. ..++.+++|+.++.+++++.+++.++ ++++
T Consensus 218 --------------------------------~~~~~~~l~~~---v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~ 262 (471)
T PRK06467 218 --------------------------------VKVFTKRIKKQ---FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQR 262 (471)
T ss_pred --------------------------------HHHHHHHHhhc---eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEE
Confidence 01223333322 23667889999987777777776543 4699
Q ss_pred ccEEEEecCCchhhh
Q 006025 233 GDLLIGADGIWSKVR 247 (664)
Q Consensus 233 adlvVgADG~~S~vR 247 (664)
+|.||.|.|....+.
T Consensus 263 ~D~vi~a~G~~pn~~ 277 (471)
T PRK06467 263 YDAVLVAVGRVPNGK 277 (471)
T ss_pred eCEEEEeecccccCC
Confidence 999999999876653
No 262
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.29 E-value=0.0014 Score=70.31 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=29.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHc--CCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~ 110 (664)
++|+|||||+||+.+|..|.+. ..+|+|+++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 4899999999999999999885 45899999875
No 263
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.28 E-value=0.0026 Score=70.13 Aligned_cols=100 Identities=31% Similarity=0.421 Sum_probs=69.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.... ..+ .++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~--------------------~~d----~~~------------ 215 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP--------------------NED----AEV------------ 215 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC--------------------ccC----HHH------------
Confidence 46899999999999999999999999999997532110 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEc--CC--cEEe
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE--NG--QCYA 232 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~--~g--~~i~ 232 (664)
+..+.+.|.+ .+ ..++.+++|++++.+++.+.+++. +| ++++
T Consensus 216 --------------------------------~~~l~~~l~~-~g-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~ 261 (466)
T PRK07818 216 --------------------------------SKEIAKQYKK-LG-VKILTGTKVESIDDNGSKVTVTVSKKDGKAQELE 261 (466)
T ss_pred --------------------------------HHHHHHHHHH-CC-CEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEE
Confidence 0123333332 23 347789999999877666666654 56 4799
Q ss_pred ccEEEEecCCchhh
Q 006025 233 GDLLIGADGIWSKV 246 (664)
Q Consensus 233 adlvVgADG~~S~v 246 (664)
+|.||.|-|....+
T Consensus 262 ~D~vi~a~G~~pn~ 275 (466)
T PRK07818 262 ADKVLQAIGFAPRV 275 (466)
T ss_pred eCEEEECcCcccCC
Confidence 99999999976554
No 264
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.28 E-value=0.00024 Score=78.87 Aligned_cols=33 Identities=33% Similarity=0.534 Sum_probs=31.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
.|||+||||||+|+++|+.|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999973
No 265
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.28 E-value=0.0021 Score=70.35 Aligned_cols=99 Identities=26% Similarity=0.329 Sum_probs=68.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.... ..+ +++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~--------------------~~~----~~~------------ 200 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP--------------------REE----PSV------------ 200 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC--------------------CCC----HHH------------
Confidence 45899999999999999999999999999998642110 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
+..+.+.|.+ .+ ..++.+++|++++.+++.+.++ .+|+++.+|.|
T Consensus 201 --------------------------------~~~~~~~l~~-~G-I~i~~~~~V~~i~~~~~~v~v~-~~g~~i~~D~v 245 (438)
T PRK07251 201 --------------------------------AALAKQYMEE-DG-ITFLLNAHTTEVKNDGDQVLVV-TEDETYRFDAL 245 (438)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEcCCEEEEEEecCCEEEEE-ECCeEEEcCEE
Confidence 0012222322 22 3477789999998766666555 35678999999
Q ss_pred EEecCCchhh
Q 006025 237 IGADGIWSKV 246 (664)
Q Consensus 237 VgADG~~S~v 246 (664)
|.|-|.....
T Consensus 246 iva~G~~p~~ 255 (438)
T PRK07251 246 LYATGRKPNT 255 (438)
T ss_pred EEeeCCCCCc
Confidence 9999987553
No 266
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.26 E-value=0.00027 Score=76.48 Aligned_cols=37 Identities=16% Similarity=0.340 Sum_probs=34.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
++.+||+|||+|.+|+.+|..|++.|.+|+++|++..
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~ 38 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPY 38 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCC
Confidence 4569999999999999999999999999999999853
No 267
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.25 E-value=0.0024 Score=70.45 Aligned_cols=100 Identities=28% Similarity=0.269 Sum_probs=68.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.... .++ .++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~--------------------~~d----~~~------------ 217 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP--------------------GTD----TET------------ 217 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC--------------------CCC----HHH------------
Confidence 46899999999999999999999999999997532110 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEc---C--CcEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE---N--GQCY 231 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~---~--g~~i 231 (664)
+..+.+.|.+ .+ ..++.+++|++++.+++++.+++. + ++.+
T Consensus 218 --------------------------------~~~l~~~l~~-~g-V~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i 263 (466)
T PRK06115 218 --------------------------------AKTLQKALTK-QG-MKFKLGSKVTGATAGADGVSLTLEPAAGGAAETL 263 (466)
T ss_pred --------------------------------HHHHHHHHHh-cC-CEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEE
Confidence 0122233322 12 347788999999876667666543 2 3579
Q ss_pred eccEEEEecCCchhh
Q 006025 232 AGDLLIGADGIWSKV 246 (664)
Q Consensus 232 ~adlvVgADG~~S~v 246 (664)
.+|.||.|.|....+
T Consensus 264 ~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 264 QADYVLVAIGRRPYT 278 (466)
T ss_pred EeCEEEEccCCcccc
Confidence 999999999986543
No 268
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.24 E-value=0.00037 Score=83.19 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=32.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..++|+|||||||||++|..|+++|++|+|||+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 45799999999999999999999999999999874
No 269
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.23 E-value=0.0036 Score=65.67 Aligned_cols=137 Identities=20% Similarity=0.234 Sum_probs=74.3
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCC--eEEEEccCCcccc-CCCCcccceeeCchHHHHHHhcChhHHHHHHHhcccc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDMSAIR-GEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVT 151 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~--~~~~~~~~~~~~~-~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~ 151 (664)
.....|+|||||.++...+..|.+++. +|+++=|++.... ..+.+. .-...|.-.+.+..+....-.++.....
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~-ne~f~P~~v~~f~~l~~~~R~~~l~~~~-- 264 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFV-NEIFSPEYVDYFYSLPDEERRELLREQR-- 264 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCH-HGGGSHHHHHHHHTS-HHHHHHHHHHTG--
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccch-hhhcCchhhhhhhcCCHHHHHHHHHHhH--
Confidence 356789999999999999999999875 8999988754321 111110 1135566666666653322222222110
Q ss_pred CccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHH---HHHHH-hc-C--CceEEeCCeEEEEEeeCC-eEEE
Q 006025 152 GDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQ---QILAK-AV-G--DEIILNESNVIDFKDHGD-KVSV 223 (664)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~---~~L~~-~~-~--~~~i~~~~~v~~v~~~~~-~v~v 223 (664)
... + -.|+...++ +.|.+ .+ + ...++.+++|++++..++ ++.+
T Consensus 265 --~~n-------------y--------------~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l 315 (341)
T PF13434_consen 265 --HTN-------------Y--------------GGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRL 315 (341)
T ss_dssp --GGT-------------S--------------SEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEE
T ss_pred --hhc-------------C--------------CCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEE
Confidence 000 0 022222222 22222 12 1 235778999999998884 8998
Q ss_pred EEcCC-----cEEeccEEEEecCCc
Q 006025 224 VLENG-----QCYAGDLLIGADGIW 243 (664)
Q Consensus 224 ~~~~g-----~~i~adlvVgADG~~ 243 (664)
++.+. .++++|+||.|.|.+
T Consensus 316 ~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 316 TLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEETTT--EEEEEESEEEE---EE
T ss_pred EEEECCCCCeEEEecCEEEEcCCcc
Confidence 88752 478999999999953
No 270
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.23 E-value=0.0004 Score=81.13 Aligned_cols=36 Identities=33% Similarity=0.556 Sum_probs=33.0
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...++|+|||||||||++|..|+++|++|+|||+.+
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 346799999999999999999999999999999864
No 271
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.23 E-value=0.00041 Score=83.22 Aligned_cols=36 Identities=36% Similarity=0.552 Sum_probs=33.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|||||||||++|+.|++.|++|+|+|+.+.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 468999999999999999999999999999998754
No 272
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.22 E-value=0.00038 Score=76.75 Aligned_cols=37 Identities=32% Similarity=0.443 Sum_probs=33.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...++|+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~ 177 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR 177 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3457999999999999999999999999999998753
No 273
>PRK13748 putative mercuric reductase; Provisional
Probab=97.21 E-value=0.00034 Score=79.16 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=32.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
..+||+||||||+|+++|..|++.|.+|+|+|+.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~ 130 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG 130 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 4699999999999999999999999999999986
No 274
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.21 E-value=0.00031 Score=77.24 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+|+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~ 33 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDV 33 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 589999999999999999999999999998753
No 275
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.21 E-value=0.0032 Score=69.48 Aligned_cols=100 Identities=21% Similarity=0.273 Sum_probs=68.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.... ..+..+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~d~~~---------------- 209 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP--------------------REEPEI---------------- 209 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC--------------------ccCHHH----------------
Confidence 36899999999999999999999999999998642110 000000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcC---CcEEec
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLEN---GQCYAG 233 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~---g~~i~a 233 (664)
+..+.+.|.+ .+ ..++.+++|+.++.+++.+.+++.+ ++++++
T Consensus 210 --------------------------------~~~l~~~l~~-~g-V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~ 255 (463)
T TIGR02053 210 --------------------------------SAAVEEALAE-EG-IEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEA 255 (463)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEe
Confidence 0122333332 22 3477789999998766666665542 368999
Q ss_pred cEEEEecCCchhh
Q 006025 234 DLLIGADGIWSKV 246 (664)
Q Consensus 234 dlvVgADG~~S~v 246 (664)
|.||.|.|.....
T Consensus 256 D~ViiA~G~~p~~ 268 (463)
T TIGR02053 256 DELLVATGRRPNT 268 (463)
T ss_pred CEEEEeECCCcCC
Confidence 9999999976543
No 276
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.20 E-value=0.00041 Score=69.09 Aligned_cols=34 Identities=35% Similarity=0.534 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+|.+|||+|++|+.+|..|++.|.+|.|+||++.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H 35 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH 35 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence 7999999999999999999999999999999864
No 277
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.19 E-value=0.00037 Score=80.09 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=32.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..++|+|||||||||++|..|++.|++|+|||+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999999999999999999999999864
No 278
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.19 E-value=0.0024 Score=74.78 Aligned_cols=100 Identities=23% Similarity=0.344 Sum_probs=69.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+.... ..++...
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~-------------------~~ld~~~---------------- 184 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMA-------------------KQLDQTA---------------- 184 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhh-------------------hhcCHHH----------------
Confidence 35799999999999999999999999999997532100 0010000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
...+.+.|.+ .+ ..++.+++++++..++....|++.||+++.+|+|
T Consensus 185 --------------------------------~~~l~~~l~~-~G-V~v~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~V 230 (785)
T TIGR02374 185 --------------------------------GRLLQRELEQ-KG-LTFLLEKDTVEIVGATKADRIRFKDGSSLEADLI 230 (785)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEeCCceEEEEcCCceEEEEECCCCEEEcCEE
Confidence 0122233322 23 3367788888887655555688899999999999
Q ss_pred EEecCCchh
Q 006025 237 IGADGIWSK 245 (664)
Q Consensus 237 VgADG~~S~ 245 (664)
|.|-|....
T Consensus 231 i~a~G~~Pn 239 (785)
T TIGR02374 231 VMAAGIRPN 239 (785)
T ss_pred EECCCCCcC
Confidence 999998643
No 279
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.18 E-value=0.0037 Score=69.13 Aligned_cols=100 Identities=26% Similarity=0.257 Sum_probs=69.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.... ..+ +++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~d----~~~------------ 226 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA--------------------AAD----EQV------------ 226 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC--------------------cCC----HHH------------
Confidence 46899999999999999999999999999998642110 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCC----cEEe
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG----QCYA 232 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g----~~i~ 232 (664)
+..+.+.|.+ . ...++.+++|++++.+++++.+.+.++ ++++
T Consensus 227 --------------------------------~~~~~~~l~~-~-gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~ 272 (475)
T PRK06327 227 --------------------------------AKEAAKAFTK-Q-GLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLE 272 (475)
T ss_pred --------------------------------HHHHHHHHHH-c-CcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEE
Confidence 0012222222 1 234778899999987777777776553 4799
Q ss_pred ccEEEEecCCchhh
Q 006025 233 GDLLIGADGIWSKV 246 (664)
Q Consensus 233 adlvVgADG~~S~v 246 (664)
+|.||.|.|.....
T Consensus 273 ~D~vl~a~G~~p~~ 286 (475)
T PRK06327 273 VDKLIVSIGRVPNT 286 (475)
T ss_pred cCEEEEccCCccCC
Confidence 99999999987653
No 280
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.16 E-value=0.0003 Score=72.62 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC-CeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~ 111 (664)
||+||||+|++|+++|..|++.| .+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 69999999999999999999997 79999999753
No 281
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.16 E-value=0.0044 Score=68.52 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=31.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|||||++|+.+|..|++.|.+|+|+|+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 4689999999999999999999999999999864
No 282
>PLN02487 zeta-carotene desaturase
Probab=97.15 E-value=0.00057 Score=76.32 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=33.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCcc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~ 112 (664)
+.++|+|||||++||++|+.|+++|++|+|+|+.+..
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~ 110 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFI 110 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCC
Confidence 4469999999999999999999999999999997643
No 283
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.0014 Score=68.57 Aligned_cols=150 Identities=23% Similarity=0.325 Sum_probs=81.6
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccc------cCCCCcccceeeCchHHHHHHhcChhHHHHHHHhc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAI------RGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAG 148 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~------~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~ 148 (664)
...+||+|||||-||..+|.+.+|.|-+.+++-.+-... ...|..+.++ -++..++|+ |+...+.+..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~-----LmrEVDALd-Gl~~rvcD~s 99 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGH-----LMREVDALD-GLCSRVCDQS 99 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccce-----eeeeehhhc-chHhhhhhhh
Confidence 457999999999999999999999999999997653211 1111111111 122234443 3333332221
Q ss_pred cccCccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCc---eEEeCCeEEEEEee-CC-----
Q 006025 149 CVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDE---IILNESNVIDFKDH-GD----- 219 (664)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~---~i~~~~~v~~v~~~-~~----- 219 (664)
.+.. .+ .+...|. +. ...-..++|..+.+.+.+.+... .++ ...|.++... ++
T Consensus 100 ~vq~-k~---LNrs~GP----------AV---wg~RAQiDR~lYkk~MQkei~st~nL~ir-e~~V~dliv~~~~~~~~~ 161 (679)
T KOG2311|consen 100 GVQY-KV---LNRSKGP----------AV---WGLRAQIDRKLYKKNMQKEISSTPNLEIR-EGAVADLIVEDPDDGHCV 161 (679)
T ss_pred hhhH-HH---hhccCCC----------cc---cChHHhhhHHHHHHHHHHHhccCCcchhh-hhhhhheeeccCCCCceE
Confidence 1110 00 1111110 00 00012466666666666665322 344 4456665432 22
Q ss_pred eEEEEEcCCcEEeccEEEEecCCchhhhhhh
Q 006025 220 KVSVVLENGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 220 ~v~v~~~~g~~i~adlvVgADG~~S~vR~~l 250 (664)
...|.+.||..+.|+-||...|.. +|..+
T Consensus 162 ~~gV~l~dgt~v~a~~VilTTGTF--L~~~I 190 (679)
T KOG2311|consen 162 VSGVVLVDGTVVYAESVILTTGTF--LRGQI 190 (679)
T ss_pred EEEEEEecCcEeccceEEEeeccc--eeeEE
Confidence 123778899999999999999974 44444
No 284
>PRK06370 mercuric reductase; Validated
Probab=97.14 E-value=0.0045 Score=68.27 Aligned_cols=100 Identities=27% Similarity=0.380 Sum_probs=67.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.... ..+ .++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~--------------------~~~----~~~------------ 214 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP--------------------RED----EDV------------ 214 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc--------------------ccC----HHH------------
Confidence 46899999999999999999999999999998642110 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEc--C-CcEEec
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLE--N-GQCYAG 233 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~--~-g~~i~a 233 (664)
+..+.+.|.+ .+ ..++.+++|.+++.+++++.+.+. + ++++.+
T Consensus 215 --------------------------------~~~l~~~l~~-~G-V~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~ 260 (463)
T PRK06370 215 --------------------------------AAAVREILER-EG-IDVRLNAECIRVERDGDGIAVGLDCNGGAPEITG 260 (463)
T ss_pred --------------------------------HHHHHHHHHh-CC-CEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEe
Confidence 0122233322 22 347788999999877666555442 3 457999
Q ss_pred cEEEEecCCchhh
Q 006025 234 DLLIGADGIWSKV 246 (664)
Q Consensus 234 dlvVgADG~~S~v 246 (664)
|.||.|.|.....
T Consensus 261 D~Vi~A~G~~pn~ 273 (463)
T PRK06370 261 SHILVAVGRVPNT 273 (463)
T ss_pred CEEEECcCCCcCC
Confidence 9999999976543
No 285
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family. This family represents a conserved protein of bacterial type III secretion systems. Gene symbols are variable from species to species. Members are designated YscD in Yersinia, HrpQ in Pseudomonas syringae, and EscD in enteropathogenic Escherichia coli. In the Chlamydiae, this model describes the C-terminal 400 residues of a longer protein.
Probab=97.13 E-value=0.0014 Score=70.49 Aligned_cols=81 Identities=9% Similarity=0.169 Sum_probs=62.1
Q ss_pred CCCCCCCCCeEEeeccCCCCEEec-CCCCCCCCcceeEeCCCcccccceEEEEECCEEEEEECCCCceeEEeCCCCceee
Q 006025 536 GSENVVSQPIYLSVSHENEPYLIG-SESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYR 614 (664)
Q Consensus 536 ~~~~~~~~~~~l~~~~~~~~~~iG-R~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~~~Dl~S~nGt~vn~~~~~~~~ 614 (664)
|...| ..+.|. ...++|| ++++ |||++.++.||++|++|..+.+++.+.| +..++++||. +
T Consensus 8 G~~~G--~~~~L~----~g~~~iG~~~~~-----~di~L~d~~~~~~h~~l~v~~~~~~l~~--~~~~~~~~g~-----~ 69 (410)
T TIGR02500 8 GPHRG--AELPLP----EGNLVLGTDAAD-----CDIVLSDGGIAAVHVSLHVRLEGVTLAG--AVEPAWEEGG-----V 69 (410)
T ss_pred CCCCC--cEEECC----CCceEeccCCCC-----cEEEeCCCCccchheEEEEcCceEEEec--CCcceeECCc-----c
Confidence 44444 778888 8889999 8888 9999999999999999999999998886 6777889883 2
Q ss_pred cCCCCcEEeCCCCEEEECCC
Q 006025 615 VSSNFPARFRPSDTIEFGSD 634 (664)
Q Consensus 615 l~~~~~~~l~~gd~i~~g~~ 634 (664)
+.......|..+..|..|..
T Consensus 70 ~~~~~g~~l~~~~~l~~g~~ 89 (410)
T TIGR02500 70 LPDEEGTPLPSGTPLLVAGV 89 (410)
T ss_pred cccCCCCccCCCCceeccee
Confidence 22222344666666666654
No 286
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.11 E-value=0.0021 Score=75.51 Aligned_cols=41 Identities=20% Similarity=0.144 Sum_probs=32.0
Q ss_pred ceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchh
Q 006025 203 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 203 ~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~ 245 (664)
..++.+++|++++.+. -.|++.+|+++++|.||.|.|....
T Consensus 74 I~~~~g~~V~~Id~~~--~~V~~~~G~~i~yD~LVIATGs~p~ 114 (847)
T PRK14989 74 IKVLVGERAITINRQE--KVIHSSAGRTVFYDKLIMATGSYPW 114 (847)
T ss_pred CEEEcCCEEEEEeCCC--cEEEECCCcEEECCEEEECCCCCcC
Confidence 3467788899887654 3456678889999999999998654
No 287
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.11 E-value=0.00058 Score=78.27 Aligned_cols=37 Identities=27% Similarity=0.482 Sum_probs=33.6
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...++|+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~ 227 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQ 227 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 3457999999999999999999999999999998753
No 288
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.10 E-value=0.00057 Score=72.69 Aligned_cols=49 Identities=24% Similarity=0.493 Sum_probs=40.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAI 136 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l 136 (664)
+||+|||||++|+++|+.|+++|++|+|+|+... .+.+++.+..+|..+
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~~----------~~~~s~gs~d~L~~~ 49 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQS----------ALHFSSGSLDLLSRL 49 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCCc----------hhhhhhHHHhHhhhc
Confidence 5899999999999999999999999999998642 234556666666655
No 289
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.09 E-value=0.0025 Score=69.92 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=27.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
+|||+|||+||+|..+|.. ..|.+|+|+|++
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~ 32 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG 32 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence 5899999999999988654 469999999985
No 290
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.09 E-value=0.0038 Score=73.29 Aligned_cols=101 Identities=24% Similarity=0.300 Sum_probs=69.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
...++|||||+.|+.+|..|++.|.+|+|+|+.+... + ..++...
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll-------------~------~~ld~~~---------------- 189 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM-------------A------EQLDQMG---------------- 189 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch-------------h------hhcCHHH----------------
Confidence 3579999999999999999999999999999753210 0 0010000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeC--CeEEEEEcCCcEEecc
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHG--DKVSVVLENGQCYAGD 234 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~--~~v~v~~~~g~~i~ad 234 (664)
...+.+.|.+ .+ ..++.+++++++..++ ....+.+.+|+++.+|
T Consensus 190 --------------------------------~~~l~~~L~~-~G-V~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D 235 (847)
T PRK14989 190 --------------------------------GEQLRRKIES-MG-VRVHTSKNTLEIVQEGVEARKTMRFADGSELEVD 235 (847)
T ss_pred --------------------------------HHHHHHHHHH-CC-CEEEcCCeEEEEEecCCCceEEEEECCCCEEEcC
Confidence 0123333322 23 3477888999887543 3456788899999999
Q ss_pred EEEEecCCchhh
Q 006025 235 LLIGADGIWSKV 246 (664)
Q Consensus 235 lvVgADG~~S~v 246 (664)
+||.|-|.....
T Consensus 236 ~Vv~A~G~rPn~ 247 (847)
T PRK14989 236 FIVFSTGIRPQD 247 (847)
T ss_pred EEEECCCcccCc
Confidence 999999986553
No 291
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.09 E-value=0.00067 Score=74.57 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=32.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHc----CCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~----g~~~~~~~~~~~ 111 (664)
...+|+|||||++||++|..|++. |++|+|+|+.+.
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~ 60 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV 60 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence 357899999999999999999995 689999999864
No 292
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.07 E-value=0.00054 Score=76.38 Aligned_cols=35 Identities=37% Similarity=0.614 Sum_probs=32.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||||||+| +|+++|+.+++.|.+|+|+||...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~ 40 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDK 40 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCC
Confidence 36799999999 999999999999999999998753
No 293
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.06 E-value=0.0063 Score=67.07 Aligned_cols=34 Identities=38% Similarity=0.559 Sum_probs=31.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4689999999999999999999999999999864
No 294
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.06 E-value=0.00062 Score=73.23 Aligned_cols=34 Identities=44% Similarity=0.656 Sum_probs=32.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+||+|||+|++|+++|+.|+++|.+|+|+|+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 4799999999999999999999999999999863
No 295
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.05 E-value=0.0058 Score=67.48 Aligned_cols=100 Identities=24% Similarity=0.303 Sum_probs=67.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHH---cCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCc
Q 006025 77 KLRILVAGGGIGGLVFALAAKR---KGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGD 153 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~---~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~ 153 (664)
..+|+|||||+.|+.+|..++. .|.+|+|+|+.+.... .++..+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~--------------------~~d~~~------------- 233 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILR--------------------GFDSTL------------- 233 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccc--------------------ccCHHH-------------
Confidence 4689999999999999987654 4999999997642110 010000
Q ss_pred cccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCe-EEEEEcCCcEEe
Q 006025 154 RINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLENGQCYA 232 (664)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~ 232 (664)
+..+.+.|.+ .+ ..++.++++++++.++++ ..+.+.+|++++
T Consensus 234 -----------------------------------~~~l~~~L~~-~G-I~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~ 276 (486)
T TIGR01423 234 -----------------------------------RKELTKQLRA-NG-INIMTNENPAKVTLNADGSKHVTFESGKTLD 276 (486)
T ss_pred -----------------------------------HHHHHHHHHH-cC-CEEEcCCEEEEEEEcCCceEEEEEcCCCEEE
Confidence 0122333322 22 347778899999865443 567777888999
Q ss_pred ccEEEEecCCchhh
Q 006025 233 GDLLIGADGIWSKV 246 (664)
Q Consensus 233 adlvVgADG~~S~v 246 (664)
+|.||.|-|.....
T Consensus 277 ~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 277 VDVVMMAIGRVPRT 290 (486)
T ss_pred cCEEEEeeCCCcCc
Confidence 99999999987654
No 296
>PRK07846 mycothione reductase; Reviewed
Probab=97.05 E-value=0.0027 Score=69.62 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=27.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
+|||+||||||+|..+|.. ..|.+|+|+|++
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~ 31 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG 31 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC
Confidence 3799999999999988865 469999999985
No 297
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.04 E-value=0.00077 Score=76.15 Aligned_cols=36 Identities=39% Similarity=0.696 Sum_probs=33.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||||||+|++||++|+.++++|.+|+|+||...
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~ 45 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAH 45 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 468999999999999999999999999999999753
No 298
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.02 E-value=0.0008 Score=74.03 Aligned_cols=36 Identities=33% Similarity=0.515 Sum_probs=33.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..++|+||||||+|+++|..|+++|++|+|+|+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 457999999999999999999999999999998753
No 299
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.02 E-value=0.0067 Score=67.41 Aligned_cols=97 Identities=22% Similarity=0.306 Sum_probs=68.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
.+|+|||||+.|+.+|..|++.|.+|+|+++.. ... .++..+.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~--------------------~~d~~~~---------------- 225 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSI-PLR--------------------GFDRQCS---------------- 225 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCc-ccc--------------------cCCHHHH----------------
Confidence 489999999999999999999999999998631 110 0100000
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEE
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLI 237 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvV 237 (664)
..+.+.|.+ .+ ..++.++++..++..++.+.+.+.+|+++.+|.||
T Consensus 226 --------------------------------~~l~~~l~~-~G-V~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl 271 (499)
T PTZ00052 226 --------------------------------EKVVEYMKE-QG-TLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVL 271 (499)
T ss_pred --------------------------------HHHHHHHHH-cC-CEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEE
Confidence 122233322 22 33667888888876666677888888889999999
Q ss_pred EecCCchh
Q 006025 238 GADGIWSK 245 (664)
Q Consensus 238 gADG~~S~ 245 (664)
.|-|....
T Consensus 272 ~a~G~~pn 279 (499)
T PTZ00052 272 YATGRKPD 279 (499)
T ss_pred EeeCCCCC
Confidence 99998654
No 300
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.02 E-value=0.00062 Score=75.06 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+|+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~ 33 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSF 33 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 589999999999999999999999999999754
No 301
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.01 E-value=0.0034 Score=66.41 Aligned_cols=34 Identities=38% Similarity=0.582 Sum_probs=31.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcC--CeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~ 110 (664)
+.+|+|||||.+|+.+|..|.++- .+|+++|++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~ 38 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRD 38 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCC
Confidence 468999999999999999999975 8999999975
No 302
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.00 E-value=0.0062 Score=66.41 Aligned_cols=98 Identities=23% Similarity=0.363 Sum_probs=66.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||++|+.+|..|++.|.+|+++++.+... . ..++ .++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~------------~-------~~~~----~~~------------ 181 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL------------N-------KLFD----EEM------------ 181 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC------------c-------cccC----HHH------------
Confidence 3689999999999999999999999999999764210 0 0000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
+..+.+.|.+ .+ ..++.+++|.+++.++ .+ +.+.+|+++.+|+|
T Consensus 182 --------------------------------~~~~~~~l~~-~g-V~v~~~~~v~~i~~~~-~~-v~~~~g~~i~~D~v 225 (427)
T TIGR03385 182 --------------------------------NQIVEEELKK-HE-INLRLNEEVDSIEGEE-RV-KVFTSGGVYQADMV 225 (427)
T ss_pred --------------------------------HHHHHHHHHH-cC-CEEEeCCEEEEEecCC-CE-EEEcCCCEEEeCEE
Confidence 0122223322 23 3367788999987543 33 56678889999999
Q ss_pred EEecCCchh
Q 006025 237 IGADGIWSK 245 (664)
Q Consensus 237 VgADG~~S~ 245 (664)
|.|.|....
T Consensus 226 i~a~G~~p~ 234 (427)
T TIGR03385 226 ILATGIKPN 234 (427)
T ss_pred EECCCccCC
Confidence 999998644
No 303
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.99 E-value=0.008 Score=65.85 Aligned_cols=99 Identities=24% Similarity=0.259 Sum_probs=68.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+.... ..+ .++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~--------------------~~~----~~~------------ 201 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP--------------------RED----RDI------------ 201 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC--------------------CcC----HHH------------
Confidence 35899999999999999999999999999998532100 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
...+.+.|.+ .+ ..++.+++|++++.+++.+.+..+++ ++.+|.|
T Consensus 202 --------------------------------~~~l~~~l~~-~g-V~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~v 246 (441)
T PRK08010 202 --------------------------------ADNIATILRD-QG-VDIILNAHVERISHHENQVQVHSEHA-QLAVDAL 246 (441)
T ss_pred --------------------------------HHHHHHHHHh-CC-CEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEE
Confidence 0122233322 22 34677899999987777777766555 5899999
Q ss_pred EEecCCchhh
Q 006025 237 IGADGIWSKV 246 (664)
Q Consensus 237 VgADG~~S~v 246 (664)
|.|-|.....
T Consensus 247 l~a~G~~pn~ 256 (441)
T PRK08010 247 LIASGRQPAT 256 (441)
T ss_pred EEeecCCcCC
Confidence 9999987654
No 304
>PLN02676 polyamine oxidase
Probab=96.99 E-value=0.0008 Score=74.31 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=44.3
Q ss_pred HHHHHHHHhcC--------CceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchh
Q 006025 191 TLQQILAKAVG--------DEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 191 ~l~~~L~~~~~--------~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~ 245 (664)
.|-+.|.+.+. ...|+++++|++|+.++++|+|++++|++++||.||.|...+..
T Consensus 225 ~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~a~~VIvtvPl~vL 287 (487)
T PLN02676 225 SLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYRAKYVIVSVSLGVL 287 (487)
T ss_pred HHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEEeCEEEEccChHHh
Confidence 45556665441 13488999999999999999999999999999999999986544
No 305
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.98 E-value=0.0056 Score=66.93 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=31.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|||||++|+.+|..|++.|.+|+|+++.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 3589999999999999999999999999999863
No 306
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.98 E-value=0.00077 Score=74.54 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCcc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~ 112 (664)
+||+|||+||+|+++|..|++.|++|+++|++...
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~ 35 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD 35 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 59999999999999999999999999999998654
No 307
>PRK02106 choline dehydrogenase; Validated
Probab=96.97 E-value=0.00084 Score=75.83 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=33.2
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHH-cCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKR-KGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~-~g~~~~~~~~~~ 110 (664)
...+|+||||+|++|+.+|..|++ .|++|+|+|+.+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 345899999999999999999999 799999999984
No 308
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.97 E-value=0.0013 Score=71.34 Aligned_cols=36 Identities=33% Similarity=0.443 Sum_probs=33.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...+|+|||+||+||++|..|++.||.|+++|+.+.
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 347999999999999999999999999999999754
No 309
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.96 E-value=0.0027 Score=74.43 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=32.6
Q ss_pred ceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchh
Q 006025 203 EIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSK 245 (664)
Q Consensus 203 ~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~ 245 (664)
..++.+++|++++.+.. +|++.+|+++.+|.||.|.|....
T Consensus 69 v~~~~g~~V~~Id~~~k--~V~~~~g~~~~yD~LVlATGs~p~ 109 (785)
T TIGR02374 69 ITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYPF 109 (785)
T ss_pred CEEEcCCeEEEEECCCC--EEEECCCcEeeCCEEEECCCCCcC
Confidence 34777899999976543 566788889999999999998643
No 310
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.96 E-value=0.0074 Score=65.25 Aligned_cols=100 Identities=27% Similarity=0.328 Sum_probs=69.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||+|++|+.+|..|+++|++|+++|+.+.... .+ ...++
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~--------------------~~---~~~~~------------ 180 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG--------------------QL---LDPEV------------ 180 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch--------------------hh---hhHHH------------
Confidence 46899999999999999999999999999998743210 00 00000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEE---EEEcCCcEEec
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVS---VVLENGQCYAG 233 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~---v~~~~g~~i~a 233 (664)
...+.+.|.+ .+ ..++.+.++..++...+... +...++..+++
T Consensus 181 --------------------------------~~~~~~~l~~-~g-i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 226 (415)
T COG0446 181 --------------------------------AEELAELLEK-YG-VELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKA 226 (415)
T ss_pred --------------------------------HHHHHHHHHH-CC-cEEEeCCceEEEEcccCcceeeEEEEeCCcEEEe
Confidence 0022222222 22 33667888888887666544 57778889999
Q ss_pred cEEEEecCCchh
Q 006025 234 DLLIGADGIWSK 245 (664)
Q Consensus 234 dlvVgADG~~S~ 245 (664)
|+++.+.|..-.
T Consensus 227 d~~~~~~g~~p~ 238 (415)
T COG0446 227 DLVIIGPGERPN 238 (415)
T ss_pred eEEEEeeccccc
Confidence 999999997653
No 311
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.95 E-value=0.0011 Score=76.01 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=33.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...+|+||||||+||++|..|++.|++|+|||+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 467999999999999999999999999999998753
No 312
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.95 E-value=0.0079 Score=66.54 Aligned_cols=97 Identities=19% Similarity=0.134 Sum_probs=66.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCccccc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRING 157 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~~ 157 (664)
.+|+|||||+.|+.+|..|++.|.+|+|+++. .... .++ +++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~--------------------~~d----~~~------------- 222 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR--------------------GFD----QDC------------- 222 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-cccc--------------------ccC----HHH-------------
Confidence 47999999999999999999999999999863 1100 010 000
Q ss_pred cccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCC---cEEecc
Q 006025 158 LVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENG---QCYAGD 234 (664)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g---~~i~ad 234 (664)
+..+.+.|.+ .+ ..++.++.++.++..++.+.+++.++ +++.+|
T Consensus 223 -------------------------------~~~l~~~L~~-~g-V~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D 269 (484)
T TIGR01438 223 -------------------------------ANKVGEHMEE-HG-VKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYD 269 (484)
T ss_pred -------------------------------HHHHHHHHHH-cC-CEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeC
Confidence 0122233322 22 34677888888877666677777665 379999
Q ss_pred EEEEecCCchh
Q 006025 235 LLIGADGIWSK 245 (664)
Q Consensus 235 lvVgADG~~S~ 245 (664)
.||.|-|....
T Consensus 270 ~vl~a~G~~pn 280 (484)
T TIGR01438 270 TVLLAIGRDAC 280 (484)
T ss_pred EEEEEecCCcC
Confidence 99999997543
No 313
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.94 E-value=0.00085 Score=74.06 Aligned_cols=34 Identities=29% Similarity=0.396 Sum_probs=31.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHc-CCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~~ 109 (664)
..|||+||||||+|..+|+.+++. |.+|+|+|+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 468999999999999999999997 9999999984
No 314
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.91 E-value=0.0012 Score=69.94 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=32.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...+|+|||||++|+++|..|++.|++|+++|+.+.
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~ 52 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE 52 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 346899999999999999999999999999998753
No 315
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.90 E-value=0.0064 Score=62.12 Aligned_cols=35 Identities=34% Similarity=0.552 Sum_probs=33.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+||+|||+||.|-.+|+..++.|++...+|++.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC
Confidence 57999999999999999999999999999999864
No 316
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.88 E-value=0.0013 Score=65.69 Aligned_cols=37 Identities=27% Similarity=0.485 Sum_probs=33.6
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+...||+|||+|.|||.+|..||.+|.+|+|+|+...
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 3467999999999999999999999999999998754
No 317
>PRK14694 putative mercuric reductase; Provisional
Probab=96.87 E-value=0.01 Score=65.53 Aligned_cols=98 Identities=20% Similarity=0.273 Sum_probs=66.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||+|++|+.+|..|++.|.+|+++++... . + ..+..+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~-l---~-----------------~~~~~~---------------- 220 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARSRV-L---S-----------------QEDPAV---------------- 220 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCC-C---C-----------------CCCHHH----------------
Confidence 45899999999999999999999999999986311 0 0 000000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
...+.+.|.+ .+ ..++.++++.+++.+++.+.+.+.++ ++++|.|
T Consensus 221 --------------------------------~~~l~~~l~~-~G-I~v~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~v 265 (468)
T PRK14694 221 --------------------------------GEAIEAAFRR-EG-IEVLKQTQASEVDYNGREFILETNAG-TLRAEQL 265 (468)
T ss_pred --------------------------------HHHHHHHHHh-CC-CEEEeCCEEEEEEEcCCEEEEEECCC-EEEeCEE
Confidence 0122233322 22 34677889999887666666665444 6999999
Q ss_pred EEecCCchhh
Q 006025 237 IGADGIWSKV 246 (664)
Q Consensus 237 VgADG~~S~v 246 (664)
|.|-|.....
T Consensus 266 i~a~G~~pn~ 275 (468)
T PRK14694 266 LVATGRTPNT 275 (468)
T ss_pred EEccCCCCCc
Confidence 9999987654
No 318
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.83 E-value=0.0095 Score=67.82 Aligned_cols=34 Identities=32% Similarity=0.303 Sum_probs=31.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 3589999999999999999999999999999864
No 319
>PRK14727 putative mercuric reductase; Provisional
Probab=96.82 E-value=0.014 Score=64.66 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=68.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+++.. .. . .++ +++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l---~-----------------~~d----~~~------------ 230 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LL---F-----------------RED----PLL------------ 230 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC-CC---C-----------------cch----HHH------------
Confidence 3689999999999999999999999999998641 10 0 000 000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
...+.+.|.+ .+ ..++.+++|++++.+++.+.+...++ ++.+|.|
T Consensus 231 --------------------------------~~~l~~~L~~-~G-V~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~V 275 (479)
T PRK14727 231 --------------------------------GETLTACFEK-EG-IEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKL 275 (479)
T ss_pred --------------------------------HHHHHHHHHh-CC-CEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEE
Confidence 0012222322 22 33677889999987777777776655 5899999
Q ss_pred EEecCCchhhh
Q 006025 237 IGADGIWSKVR 247 (664)
Q Consensus 237 VgADG~~S~vR 247 (664)
|.|-|......
T Consensus 276 lvA~G~~pn~~ 286 (479)
T PRK14727 276 LISTGRHANTH 286 (479)
T ss_pred EEccCCCCCcc
Confidence 99999977553
No 320
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.82 E-value=0.0011 Score=74.77 Aligned_cols=33 Identities=36% Similarity=0.686 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHH----HcCCeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAK----RKGFEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~----~~g~~~~~~~~~~~ 111 (664)
||+|||+|.|||++|+.++ +.|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC
Confidence 7999999999999999998 77999999999754
No 321
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.81 E-value=0.001 Score=67.02 Aligned_cols=34 Identities=38% Similarity=0.587 Sum_probs=30.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...+|+|||+|++||++|+.|+++ ++|+|||.+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~ 40 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADR 40 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccc
Confidence 456899999999999999999998 8999999864
No 322
>PTZ00058 glutathione reductase; Provisional
Probab=96.80 E-value=0.013 Score=65.80 Aligned_cols=99 Identities=21% Similarity=0.274 Sum_probs=66.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||..|+.+|..|++.|.+|+|+|+.+.... .++..+.
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~--------------------~~d~~i~--------------- 281 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLR--------------------KFDETII--------------- 281 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccc--------------------cCCHHHH---------------
Confidence 46899999999999999999999999999998632110 0100000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCC-eEEEEEcCC-cEEecc
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLENG-QCYAGD 234 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~-~v~v~~~~g-~~i~ad 234 (664)
..+.+.|.+ .+ ..++.+++|.+++.+++ ++.+.+.++ +++++|
T Consensus 282 ---------------------------------~~l~~~L~~-~G-V~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD 326 (561)
T PTZ00058 282 ---------------------------------NELENDMKK-NN-INIITHANVEEIEKVKEKNLTIYLSDGRKYEHFD 326 (561)
T ss_pred ---------------------------------HHHHHHHHH-CC-CEEEeCCEEEEEEecCCCcEEEEECCCCEEEECC
Confidence 122233332 12 34677888888876543 466665554 579999
Q ss_pred EEEEecCCchh
Q 006025 235 LLIGADGIWSK 245 (664)
Q Consensus 235 lvVgADG~~S~ 245 (664)
.||.|-|....
T Consensus 327 ~VlvA~Gr~Pn 337 (561)
T PTZ00058 327 YVIYCVGRSPN 337 (561)
T ss_pred EEEECcCCCCC
Confidence 99999997644
No 323
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.78 E-value=0.0015 Score=72.83 Aligned_cols=38 Identities=29% Similarity=0.475 Sum_probs=34.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~ 112 (664)
..++||+|||||.|||.+|+.++..|.+|+|+||....
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~ 41 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPK 41 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccC
Confidence 45689999999999999999999999999999997543
No 324
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.77 E-value=0.0017 Score=71.83 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=32.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..++|+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 347999999999999999999999999999998753
No 325
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.75 E-value=0.004 Score=70.52 Aligned_cols=80 Identities=24% Similarity=0.390 Sum_probs=65.4
Q ss_pred CCCEEecCCCCCCCCcceeEeCCCcccccceEEEEECCE--EEEEECCCCceeEEeCCCCceeecCCCCcEEeCCCCEEE
Q 006025 553 NEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGA--FYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIE 630 (664)
Q Consensus 553 ~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~--~~~~Dl~S~nGt~vn~~~~~~~~l~~~~~~~l~~gd~i~ 630 (664)
.+...|||.+.... .||++....|--+||.|.-+++. +.|.-. --.=|||||+ .+. ++..|+.||+|.
T Consensus 476 eG~TrVG~~~a~~~--~DI~LsG~~I~~qHC~i~~~~g~~~vtl~p~-e~aetyVNGk-----~v~--ep~qL~~GdRii 545 (1221)
T KOG0245|consen 476 EGETRVGREDASSR--QDIVLSGQLIREQHCSIRNEGGNDVVTLEPC-EDAETYVNGK-----LVT--EPTQLRSGDRII 545 (1221)
T ss_pred cCceecCCCCcccC--CceEecchhhhhhceEEEecCCCceEEeccC-CccceeEccE-----EcC--CcceeccCCEEE
Confidence 67889999877554 99999999999999999998766 777654 3346999998 776 578999999999
Q ss_pred ECCCceeEEEEEEe
Q 006025 631 FGSDKKAIFRVKVI 644 (664)
Q Consensus 631 ~g~~~~~~~~~~~~ 644 (664)
+|... +|++--+
T Consensus 546 lG~~H--~frfn~P 557 (1221)
T KOG0245|consen 546 LGGNH--VFRFNHP 557 (1221)
T ss_pred EcCce--eEEecCH
Confidence 99965 5777644
No 326
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.75 E-value=0.0073 Score=60.48 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=31.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...|-|||||.||..+|+.+|++|++|.|+|-++.
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 34699999999999999999999999999997653
No 327
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.75 E-value=0.0022 Score=72.53 Aligned_cols=36 Identities=36% Similarity=0.530 Sum_probs=32.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...+|+|||+||+||++|..|++.|++|+|+|+.+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~ 171 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPK 171 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 457899999999999999999999999999998753
No 328
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.68 E-value=0.019 Score=62.94 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=31.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|||||++|+.+|..|++.|.+|+++++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 4689999999999999999999999999998753
No 329
>PRK13748 putative mercuric reductase; Provisional
Probab=96.64 E-value=0.018 Score=65.26 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=67.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+++... . . ..+..+.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~-l---~-----------------~~d~~~~--------------- 313 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTL-F---F-----------------REDPAIG--------------- 313 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc-c---c-----------------ccCHHHH---------------
Confidence 46899999999999999999999999999987421 0 0 0000000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLL 236 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlv 236 (664)
..+.+.|.+ .+ ..++.+++|++++.+++.+.+.+.++ ++++|.|
T Consensus 314 ---------------------------------~~l~~~l~~-~g-I~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~v 357 (561)
T PRK13748 314 ---------------------------------EAVTAAFRA-EG-IEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKL 357 (561)
T ss_pred ---------------------------------HHHHHHHHH-CC-CEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEE
Confidence 122233322 12 34677889999887666676766555 6999999
Q ss_pred EEecCCchhh
Q 006025 237 IGADGIWSKV 246 (664)
Q Consensus 237 VgADG~~S~v 246 (664)
|.|-|.....
T Consensus 358 i~a~G~~pn~ 367 (561)
T PRK13748 358 LVATGRAPNT 367 (561)
T ss_pred EEccCCCcCC
Confidence 9999986554
No 330
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.62 E-value=0.017 Score=62.80 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=29.0
Q ss_pred eEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCch
Q 006025 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (664)
Q Consensus 204 ~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S 244 (664)
.++.+++|++++. + .|.+++|+++++|+||-|-|...
T Consensus 244 ~v~~~~~v~~v~~--~--~v~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 244 DIRTKTAVKEVLD--K--EVVLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred EEEeCCeEEEEeC--C--EEEECCCCEEEccEEEEccCCCC
Confidence 4677888888864 3 35678899999999999999643
No 331
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.014 Score=55.34 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
-+|+|||.|||+-++|+.+++..++-+|+|-.
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~ 40 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGM 40 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeee
Confidence 37999999999999999999999999999964
No 332
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.46 E-value=0.00064 Score=72.41 Aligned_cols=35 Identities=6% Similarity=0.083 Sum_probs=30.7
Q ss_pred CCccccccCCCCCccccCCcccccccccccccccc
Q 006025 11 NLSTAVFSRTHFPVPVYKHSCIEFSRYDHCINYKF 45 (664)
Q Consensus 11 ~~~~~~~~~~~~~~k~~~~~~~~i~~c~~~~~~~~ 45 (664)
...-.+++||+|++|+++|+.++|++|++|+++|+
T Consensus 333 ~~gR~~ladP~l~~k~~~g~~~~i~~Ci~Cn~~C~ 367 (382)
T cd02931 333 SLGRPLLADPDVVNKIRRGRFKNIRPCISCHDGCL 367 (382)
T ss_pred eechHhHhCccHHHHHHcCCcccCcCChhhHHHHh
Confidence 35667899999999999999999999999997554
No 333
>PRK13984 putative oxidoreductase; Provisional
Probab=96.46 E-value=0.0035 Score=71.60 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=33.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
....+|+|||+|++|+++|..|+++|++|+|+|+.+.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 3467899999999999999999999999999998753
No 334
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.45 E-value=0.015 Score=58.13 Aligned_cols=32 Identities=34% Similarity=0.491 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.|+|||+|.|||+++..+-..|-.|+|+|+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~ 42 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAG 42 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccC
Confidence 59999999999999999998887899999975
No 335
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.44 E-value=0.012 Score=62.20 Aligned_cols=39 Identities=28% Similarity=0.477 Sum_probs=30.2
Q ss_pred cCCceEEeCCeEEEEEeeCCeEEEEEcCCc-EEeccEEEEecCCc
Q 006025 200 VGDEIILNESNVIDFKDHGDKVSVVLENGQ-CYAGDLLIGADGIW 243 (664)
Q Consensus 200 ~~~~~i~~~~~v~~v~~~~~~v~v~~~~g~-~i~adlvVgADG~~ 243 (664)
.+.. ++.++.|++++.+. |++.+|+ ++.++.+|=|-|..
T Consensus 222 ~GV~-v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~ 261 (405)
T COG1252 222 LGVE-VLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVR 261 (405)
T ss_pred CCCE-EEcCCceEEECCCc----EEEccCCeeEecCEEEEcCCCc
Confidence 4444 77899999997553 5666776 59999999999974
No 336
>PLN03000 amine oxidase
Probab=96.36 E-value=0.0042 Score=71.65 Aligned_cols=36 Identities=33% Similarity=0.520 Sum_probs=33.1
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...+|+|||||++|+.+|..|++.|++|+|+|++..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~r 218 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKR 218 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCc
Confidence 457999999999999999999999999999998753
No 337
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.35 E-value=0.026 Score=63.01 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=30.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+|+.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~ 384 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA 384 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC
Confidence 468999999999999999999999999999865
No 338
>PLN02546 glutathione reductase
Probab=96.34 E-value=0.037 Score=62.08 Aligned_cols=34 Identities=29% Similarity=0.318 Sum_probs=31.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 4589999999999999999999999999999753
No 339
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=96.32 E-value=0.0044 Score=64.28 Aligned_cols=35 Identities=37% Similarity=0.557 Sum_probs=30.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeE--EEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEV--LVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~--~~~~~~~ 110 (664)
...+|+|||||++||++|+.|++++-+| +|+|+.+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~ 46 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP 46 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence 4578999999999999999999998765 5599875
No 340
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.26 E-value=0.015 Score=63.94 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=68.7
Q ss_pred CCeEEeeccCCCCEEecCCCCCCCCcceeEeCCCcccccceEEEEE--CCEEEEEECCCCceeEEeCCCCceeecCCCCc
Q 006025 543 QPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK--DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP 620 (664)
Q Consensus 543 ~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~--~~~~~~~Dl~S~nGt~vn~~~~~~~~l~~~~~ 620 (664)
..|.|. ...++|||+++. .|.|...||++.++..+ .+.+.|.-||. |-+-|||. -|.++..
T Consensus 25 ~~~~~~----~~~~~~gr~pet-------~i~d~~cs~~qv~l~a~~~~~~v~~k~lg~-np~~~~~~-----~~~~~~~ 87 (526)
T TIGR01663 25 HFIHLD----AGALFLGRGPET-------GIRDRKCSKRQIELQADLEKATVALKQLGV-NPCGTGGL-----ELKPGGE 87 (526)
T ss_pred CeeccC----CCceEEccCccc-------ccchhhhchhhheeeecccCceEEEEEccC-CCcccCce-----EecCCCe
Confidence 455555 788999999994 77799999999999876 66788999955 99999999 9999999
Q ss_pred EEeCCCCEEEECCCceeEEEEEE
Q 006025 621 ARFRPSDTIEFGSDKKAIFRVKV 643 (664)
Q Consensus 621 ~~l~~gd~i~~g~~~~~~~~~~~ 643 (664)
+.|++||.+.+=..... |+++.
T Consensus 88 ~~l~~g~~l~~v~~~~~-~~~~f 109 (526)
T TIGR01663 88 GELGHGDLLEIVNGLHP-LTLQF 109 (526)
T ss_pred eeecCCCEEEEeccccc-eeEEe
Confidence 99999999998775444 55444
No 341
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=96.24 E-value=0.0036 Score=70.28 Aligned_cols=32 Identities=31% Similarity=0.377 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcC-CeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~ 110 (664)
|+||||||.+|+.+|..|++.| ++|+|+|+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 7999999975
No 342
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.23 E-value=0.04 Score=58.03 Aligned_cols=42 Identities=21% Similarity=0.225 Sum_probs=36.0
Q ss_pred ceEEeCCeEEEEEeeCCe-EEEEEcCCcEEeccEEEEecCCch
Q 006025 203 EIILNESNVIDFKDHGDK-VSVVLENGQCYAGDLLIGADGIWS 244 (664)
Q Consensus 203 ~~i~~~~~v~~v~~~~~~-v~v~~~~g~~i~adlvVgADG~~S 244 (664)
..++++++|.+++..++. ..|.+++|+++.+|.||.|=|+.+
T Consensus 188 ~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg 230 (486)
T COG2509 188 GEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSG 230 (486)
T ss_pred cEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCcch
Confidence 358899999999988775 457788999999999999999865
No 343
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.21 E-value=0.0044 Score=69.35 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=33.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..++|+||||+|.+|.++|..|+..|++|+|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 457899999999999999999999999999999984
No 344
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=96.19 E-value=0.011 Score=66.22 Aligned_cols=102 Identities=20% Similarity=0.240 Sum_probs=81.4
Q ss_pred cCCcEEEEecCCCCCCCCCeEEeeccCCCCEEecCCCCCCCCcceeEeCCCcccccceEEEEECCEEEEEECCCCceeEE
Q 006025 526 MNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYV 605 (664)
Q Consensus 526 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~~~Dl~S~nGt~v 605 (664)
++.-++++...++.+..+.|.|. ....-+|.....+ +.|.|..+.|-.+||.|..-+|.++|+-+.--.-|||
T Consensus 354 ~~lPvLve~s~dG~~s~~ri~L~----~~vtEVGs~~~~~---~~iqLfGP~IqprHc~it~meGVvTvTP~~~DA~t~V 426 (1629)
T KOG1892|consen 354 EKLPVLVELSPDGSDSRKRIRLQ----LSVTEVGSEKLDD---NSIQLFGPGIQPRHCDITNMEGVVTVTPRSMDAETYV 426 (1629)
T ss_pred ccCcEEEEEcCCCCCcceeEEec----cCceeccccccCC---cceeeeCCCCCccccchhhccceEEecccccchhhhc
Confidence 44555555556666665788888 7888899887632 6899999999999999999999999999755567999
Q ss_pred eCCCCceeecCCCCcEEeCCCCEEEECCCceeEEEEEE
Q 006025 606 TDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV 643 (664)
Q Consensus 606 n~~~~~~~~l~~~~~~~l~~gd~i~~g~~~~~~~~~~~ 643 (664)
||. +|. ++..|+.|+.|+||... .|+|..
T Consensus 427 nGh-----~is--qttiL~~G~~v~fGa~h--sfkF~d 455 (1629)
T KOG1892|consen 427 NGH-----RIS--QTTILQSGMKVQFGASH--SFKFVD 455 (1629)
T ss_pred cce-----ecc--hhhhhccCCEEEeccce--eEEecC
Confidence 999 887 46789999999999974 466553
No 345
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=96.16 E-value=0.0064 Score=64.14 Aligned_cols=35 Identities=34% Similarity=0.608 Sum_probs=30.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
...+|+|||||+||+++|..|-+.|+ .|+|+|...
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d 55 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASD 55 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEecc
Confidence 34589999999999999999997765 799999764
No 346
>PLN02976 amine oxidase
Probab=96.14 E-value=0.0059 Score=73.10 Aligned_cols=35 Identities=37% Similarity=0.598 Sum_probs=32.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..++|+|||||++|+++|+.|++.|++|+|+|+..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~ 726 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARS 726 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEEEeecc
Confidence 35799999999999999999999999999999864
No 347
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=96.07 E-value=0.0074 Score=61.67 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=32.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHc--CCeEEEEccCCccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSAI 113 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~~~ 113 (664)
...|+|||+||||+.+|..|.++ ++.|.|+|+.+.|.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPF 58 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPF 58 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCccc
Confidence 44899999999999999988874 78999999987653
No 348
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=96.07 E-value=0.00097 Score=70.45 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=31.0
Q ss_pred CCCccccccCCCCCccccCCcccccccccccccccc
Q 006025 10 VNLSTAVFSRTHFPVPVYKHSCIEFSRYDHCINYKF 45 (664)
Q Consensus 10 ~~~~~~~~~~~~~~~k~~~~~~~~i~~c~~~~~~~~ 45 (664)
|...-.+++||+|++|+++|+.++|++|++|++||.
T Consensus 303 V~~gR~~l~dP~~~~k~~~g~~~~i~~Ci~cn~~C~ 338 (353)
T cd02930 303 VSMARPFLADPDFVAKAAAGRADEINTCIACNQACL 338 (353)
T ss_pred hHhhHHHHHCccHHHHHHhCCcccCcCchhhHHHHH
Confidence 335567899999999999999999999999998443
No 349
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms]
Probab=96.06 E-value=0.016 Score=61.37 Aligned_cols=87 Identities=16% Similarity=0.316 Sum_probs=68.8
Q ss_pred CeEEeeccCCCCEEecCCCCCCCCcceeEe--CCCcccccceEEEEE-CCEEEEEECCCCceeEEeCCCCceeecCCCCc
Q 006025 544 PIYLSVSHENEPYLIGSESHEDFSRTSIVI--PSAQVSKMHARISYK-DGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFP 620 (664)
Q Consensus 544 ~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~--~~~~vSr~Ha~i~~~-~~~~~~~Dl~S~nGt~vn~~~~~~~~l~~~~~ 620 (664)
...++ ++++++||+...-..+.|+-. +...|||+.|.|... +|.|+|..|| ..-.||||. +|.+|+.
T Consensus 442 kh~mr----k~EVtlGRat~d~~VDIDLgkegpatKISRRQa~IkL~n~GsF~IkNlG-K~~I~vng~-----~l~~gq~ 511 (547)
T KOG2293|consen 442 KHYMR----KKEVTLGRATGDLKVDIDLGKEGPATKISRRQALIKLKNDGSFFIKNLG-KRSILVNGG-----ELDRGQK 511 (547)
T ss_pred Hhhhc----CcceEeeccCCCcceeeeccccCccceeeccceeEEeccCCcEEeccCc-ceeEEeCCc-----cccCCce
Confidence 35566 899999999985442233333 455799999999887 7789999995 568999999 9999999
Q ss_pred EEeCCCCEEEECCCceeEEEEEE
Q 006025 621 ARFRPSDTIEFGSDKKAIFRVKV 643 (664)
Q Consensus 621 ~~l~~gd~i~~g~~~~~~~~~~~ 643 (664)
+.|+..-+|+|-.-. |.|++
T Consensus 512 ~~L~~nclveIrg~~---FiF~~ 531 (547)
T KOG2293|consen 512 VILKNNCLVEIRGLR---FIFEI 531 (547)
T ss_pred EEeccCcEEEEccce---EEEee
Confidence 999999999998863 66664
No 350
>PLN02785 Protein HOTHEAD
Probab=96.02 E-value=0.0078 Score=67.89 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=32.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...+|+||||||.+|+.+|..|++ +.+|+|+|+..
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 346999999999999999999999 69999999986
No 351
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.02 E-value=0.007 Score=69.29 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=33.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+.|+|||.||+||++|-.|.+.||.|+||||...
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr 1819 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDR 1819 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCC
Confidence 457999999999999999999999999999999753
No 352
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=95.92 E-value=0.035 Score=56.93 Aligned_cols=100 Identities=26% Similarity=0.259 Sum_probs=71.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
+.+.+|||||..||.++..-.+.|-+|+++|--+ .++..+..++
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~------------------------~i~~~mD~Ei------------ 254 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLD------------------------QIGGVMDGEI------------ 254 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehh------------------------hhccccCHHH------------
Confidence 5689999999999999999999999999999532 1110111111
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCC-eEEEEEcC---C--cE
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD-KVSVVLEN---G--QC 230 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~-~v~v~~~~---g--~~ 230 (664)
...+++.|.. ....++.+++|++.+.+++ .+.|++.+ + ++
T Consensus 255 --------------------------------sk~~qr~L~k--QgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~t 300 (506)
T KOG1335|consen 255 --------------------------------SKAFQRVLQK--QGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKET 300 (506)
T ss_pred --------------------------------HHHHHHHHHh--cCceeEeccEEEEeeccCCCceEEEEEecCCCceeE
Confidence 1134444444 2334788999999998877 67777654 2 57
Q ss_pred EeccEEEEecCCchhh
Q 006025 231 YAGDLLIGADGIWSKV 246 (664)
Q Consensus 231 i~adlvVgADG~~S~v 246 (664)
++||.+..|-|++-.+
T Consensus 301 le~DvlLVsiGRrP~t 316 (506)
T KOG1335|consen 301 LECDVLLVSIGRRPFT 316 (506)
T ss_pred EEeeEEEEEccCcccc
Confidence 9999999999987544
No 353
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.91 E-value=0.0044 Score=66.00 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=34.7
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
....+||+|||||-+|.-+|+-.+-+|++|.++|+...
T Consensus 64 ~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF 101 (680)
T KOG0042|consen 64 STHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDF 101 (680)
T ss_pred cCCcccEEEECCCccCcceeehhhcccceeEEEecccc
Confidence 34569999999999999999999999999999999864
No 354
>PRK10262 thioredoxin reductase; Provisional
Probab=95.84 E-value=0.093 Score=54.75 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=31.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|||+|..|+.+|..|++.|.+|+++++.+
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 4689999999999999999999999999999863
No 355
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.77 E-value=0.071 Score=56.58 Aligned_cols=100 Identities=18% Similarity=0.213 Sum_probs=69.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHHHHhccccCcccc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEVMRAGCVTGDRIN 156 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~~~~~~~~~~~~~ 156 (664)
...|+++|+|..|+.+|..|.-.+++|+++++.+.+.. ++ +.+.+
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~--------------------~l---f~~~i------------ 257 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLP--------------------RL---FGPSI------------ 257 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccchh--------------------hh---hhHHH------------
Confidence 45799999999999999999999999999998643211 00 00000
Q ss_pred ccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCC--eEEEEEcCCcEEecc
Q 006025 157 GLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGD--KVSVVLENGQCYAGD 234 (664)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~--~v~v~~~~g~~i~ad 234 (664)
+..+...|.+ ....+..++.+.+++.+.+ -..|.+.||+++.||
T Consensus 258 --------------------------------~~~~~~y~e~--kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~ad 303 (478)
T KOG1336|consen 258 --------------------------------GQFYEDYYEN--KGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEAD 303 (478)
T ss_pred --------------------------------HHHHHHHHHh--cCeEEEEecceeecccCCCCcEEEEEeccCCEeccC
Confidence 1122223322 1234667888888887653 356889999999999
Q ss_pred EEEEecCCchh
Q 006025 235 LLIGADGIWSK 245 (664)
Q Consensus 235 lvVgADG~~S~ 245 (664)
+||..-|+.+.
T Consensus 304 lvv~GiG~~p~ 314 (478)
T KOG1336|consen 304 LVVVGIGIKPN 314 (478)
T ss_pred eEEEeeccccc
Confidence 99999998654
No 356
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=95.66 E-value=0.1 Score=53.64 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=30.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
..+|+|||+|+.|+.+|..|++.|.+|+++++.
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~ 173 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRR 173 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeC
Confidence 458999999999999999999999999999875
No 357
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.66 E-value=0.01 Score=59.20 Aligned_cols=37 Identities=38% Similarity=0.567 Sum_probs=30.5
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHc-CC-eEEEEccCC
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRK-GF-EVLVFEKDM 110 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~-g~-~~~~~~~~~ 110 (664)
...+++|+|||||-+|+..|..+.++ |- +|.|+|...
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 34678999999999999999999876 33 788998654
No 358
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.59 E-value=0.033 Score=61.99 Aligned_cols=33 Identities=39% Similarity=0.483 Sum_probs=29.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
....+|||||.-|+.+|..|.+.|.+|+|++-.
T Consensus 145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~ 177 (793)
T COG1251 145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIA 177 (793)
T ss_pred cCCcEEEccchhhhHHHHHHHhCCCceEEEeec
Confidence 345799999999999999999999999999743
No 359
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.52 E-value=0.017 Score=53.35 Aligned_cols=32 Identities=31% Similarity=0.454 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|.|+|||..|.++|..|+++|++|+|+.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999863
No 360
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.41 E-value=0.11 Score=58.26 Aligned_cols=34 Identities=29% Similarity=0.263 Sum_probs=31.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|||||..|+.+|..|+..|.+|+|+++.+
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 4689999999999999999999999999998753
No 361
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.33 Score=49.15 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
.-.||.+|||||-+||++|-..+..|.+|.++|--.+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~P 53 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKP 53 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeeccc
Confidence 3468999999999999999999999999999996443
No 362
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.37 E-value=0.074 Score=55.35 Aligned_cols=153 Identities=18% Similarity=0.160 Sum_probs=84.1
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcC-CeEEEEccCCccccCCCCcccceeeCchHHH--HHHhcChhHHHHHHHhccc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMSAIRGEGQYRGPIQIQSNALA--ALEAIDLDVAEEVMRAGCV 150 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~--~L~~l~~g~~~~~~~~~~~ 150 (664)
++..+|++.||-||.-|.+|++|..++ +++..+||++......|. .+....+. .|+.| .....+
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGm-----llegstlQv~FlkDL--------VTl~~P 68 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGM-----LLEGSTLQVPFLKDL--------VTLVDP 68 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCc-----ccCCccccccchhhh--------ccccCC
Confidence 356789999999999999999999876 789999999766544432 22222221 12211 111000
Q ss_pred cC-ccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCC-ceEEeCCeEEEEEeeC-C-eEE--EE
Q 006025 151 TG-DRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGD-EIILNESNVIDFKDHG-D-KVS--VV 224 (664)
Q Consensus 151 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~-~~i~~~~~v~~v~~~~-~-~v~--v~ 224 (664)
+. .....+... .++ +..|-. + -...+.|.++.+.+.=.++. ..++++.+|++|..-+ + .+. +.
T Consensus 69 Ts~ySFLNYL~~-h~R-Ly~Fl~--------~-e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~ 137 (436)
T COG3486 69 TSPYSFLNYLHE-HGR-LYEFLN--------Y-ETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVV 137 (436)
T ss_pred CCchHHHHHHHH-cch-Hhhhhh--------h-hcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEE
Confidence 00 000000000 000 000100 0 02467788777766433221 2478899999773322 2 222 45
Q ss_pred EcCCcEEeccEEEEecCCchhhhhhh
Q 006025 225 LENGQCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 225 ~~~g~~i~adlvVgADG~~S~vR~~l 250 (664)
..++++++|+-||..-|..-.+-...
T Consensus 138 t~~~~~y~ar~lVlg~G~~P~IP~~f 163 (436)
T COG3486 138 TANGTVYRARNLVLGVGTQPYIPPCF 163 (436)
T ss_pred cCCCcEEEeeeEEEccCCCcCCChHH
Confidence 55667899998888888765555443
No 363
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=95.22 E-value=0.018 Score=60.31 Aligned_cols=35 Identities=34% Similarity=0.466 Sum_probs=33.2
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
...+|++|||+|.-||++|..|++.|.+|.++|++
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerr 46 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERR 46 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEe
Confidence 45789999999999999999999999999999987
No 364
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.20 E-value=0.018 Score=54.64 Aligned_cols=33 Identities=36% Similarity=0.472 Sum_probs=26.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
++|.|||.|-+|+.+|..||+.|++|+.+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 479999999999999999999999999999875
No 365
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.06 E-value=0.028 Score=53.18 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=28.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|.|||+|..|...|..+++.|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999864
No 366
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.87 E-value=0.24 Score=52.65 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=28.6
Q ss_pred eEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCch
Q 006025 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWS 244 (664)
Q Consensus 204 ~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S 244 (664)
.++.++++++++. + .+.+.+|+++.+|+||.|-|...
T Consensus 207 ~v~~~~~v~~i~~--~--~v~~~~g~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 207 EVHEGAPVTRGPD--G--ALILADGRTLPADAILWATGARA 243 (364)
T ss_pred EEEeCCeeEEEcC--C--eEEeCCCCEEecCEEEEccCCCh
Confidence 3667888887753 2 46677889999999999999754
No 367
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.65 E-value=0.039 Score=54.26 Aligned_cols=35 Identities=23% Similarity=0.476 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCcc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~ 112 (664)
++++|||+|..|..+|..|.+.|+.|+++|+++..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~ 35 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEER 35 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHH
Confidence 37999999999999999999999999999998643
No 368
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.44 E-value=0.049 Score=60.40 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=31.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|||+|++|+++|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4579999999999999999999999999999763
No 369
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.34 E-value=0.11 Score=53.86 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=32.7
Q ss_pred eEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCC
Q 006025 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGI 242 (664)
Q Consensus 204 ~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~ 242 (664)
.++-+..|.++......+.+.+.||.+++.|+||.|-|-
T Consensus 409 ~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 409 DVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGE 447 (659)
T ss_pred eeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecC
Confidence 356677777777777778899999999999999999995
No 370
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.31 E-value=0.048 Score=60.06 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|+|||.|++|+++|..|+++|++|+++|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999864
No 371
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.22 E-value=0.75 Score=49.58 Aligned_cols=44 Identities=20% Similarity=0.147 Sum_probs=37.8
Q ss_pred eEEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchhhh
Q 006025 204 IILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVR 247 (664)
Q Consensus 204 ~i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~vR 247 (664)
.++++++|++|+.++++++|++.+|++++||.||.|-......+
T Consensus 225 ~i~l~~~V~~I~~~~~~v~v~~~~g~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 225 EIRLNTPVTRIEREDGGVTVTTEDGETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp GEESSEEEEEEEEESSEEEEEETTSSEEEESEEEE-S-HHHHHT
T ss_pred eeecCCcceeccccccccccccccceEEecceeeecCchhhhhh
Confidence 48899999999999999999999999999999999888765554
No 372
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=94.19 E-value=0.047 Score=60.23 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=34.5
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHc-CCeEEEEccCCcc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEKDMSA 112 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~~~~~ 112 (664)
....||.||||||-||+++|..|++. .++|+|+|+...+
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 45679999999999999999999987 6899999997654
No 373
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=94.08 E-value=0.53 Score=51.80 Aligned_cols=33 Identities=33% Similarity=0.420 Sum_probs=30.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~ 109 (664)
..+|+|||||.+|+.+|..|++.|. +|+++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 4689999999999999999999998 89999975
No 374
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.85 E-value=0.091 Score=48.02 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=29.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
|+|+|+|-.|+..|..|++.|++|+++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999998863
No 375
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.78 E-value=0.091 Score=54.63 Aligned_cols=35 Identities=26% Similarity=0.367 Sum_probs=31.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..++|+|||+|-.|..+|..|++.|++|+++.|..
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 34579999999999999999999999999998863
No 376
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.75 E-value=0.071 Score=55.26 Aligned_cols=32 Identities=28% Similarity=0.545 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999874
No 377
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=93.59 E-value=0.02 Score=53.66 Aligned_cols=36 Identities=19% Similarity=0.447 Sum_probs=30.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHc--CCeEEEEccCCcc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRK--GFEVLVFEKDMSA 112 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~--g~~~~~~~~~~~~ 112 (664)
..||+|||+|-+||++|+..+++ .++|.|||..-.|
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 35999999999999999999865 6899999986543
No 378
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.59 E-value=0.099 Score=48.19 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEcc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (664)
......|+|||||.+|..-|..|.+.|++|+|+..
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 34567899999999999999999999999999953
No 379
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=93.56 E-value=1.8 Score=48.11 Aligned_cols=34 Identities=44% Similarity=0.624 Sum_probs=32.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+||+|||||++||++|..|+++|++|+|+||+..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 34 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLI 34 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 5899999999999999999999999999999764
No 380
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.28 E-value=0.12 Score=56.81 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=32.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+.|+|+|+|.+|+.+|..|+++|++|+++|+..
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35689999999999999999999999999999863
No 381
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.25 E-value=0.12 Score=52.99 Aligned_cols=34 Identities=38% Similarity=0.490 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
.+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3799999999999999999999999999998753
No 382
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.02 E-value=0.13 Score=52.77 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 383
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=93.00 E-value=0.11 Score=55.80 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=28.4
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...+||+|+|-|+.-..+|.+|++.|.+|+.+|++.
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~ 37 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRND 37 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCC
Confidence 357999999999999999999999999999999985
No 384
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.99 E-value=0.11 Score=53.96 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
++|.|||.|-+||+.|..||+.||+|+.+|.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4799999999999999999999999999998753
No 385
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.98 E-value=0.13 Score=52.83 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 386
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=92.94 E-value=8.2 Score=42.99 Aligned_cols=32 Identities=34% Similarity=0.565 Sum_probs=30.3
Q ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
|+|||||++||++|..|++.|++|+|+|++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~ 32 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDK 32 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 69999999999999999999999999999864
No 387
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=92.94 E-value=0.14 Score=49.48 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=30.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
....|+|||||.+|..-+..|.+.|.+|+|++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3458999999999999999999999999999864
No 388
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.70 E-value=0.17 Score=52.38 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..|.|||+|..|...|..++..|++|+++|..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 389
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=92.65 E-value=13 Score=41.56 Aligned_cols=61 Identities=21% Similarity=0.377 Sum_probs=44.2
Q ss_pred EeeCHHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEE-EEEc---CC--cEEeccEEEEecCCchh
Q 006025 185 RVISRMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVS-VVLE---NG--QCYAGDLLIGADGIWSK 245 (664)
Q Consensus 185 ~~i~r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~-v~~~---~g--~~i~adlvVgADG~~S~ 245 (664)
..++-..|...|.+.+. ...++.+++|++++.+++++. |++. +| .+++|+.||-|.|.+|.
T Consensus 123 g~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~ 191 (516)
T TIGR03377 123 GTVDPFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAG 191 (516)
T ss_pred cEECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchH
Confidence 35777777777766542 235778999999998777643 4442 34 37999999999999886
No 390
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.63 E-value=0.11 Score=44.25 Aligned_cols=34 Identities=32% Similarity=0.327 Sum_probs=30.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
+...|+|||||.+|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4568999999999999999999999999999865
No 391
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.58 E-value=0.14 Score=52.62 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 69999999999999999999999999999874
No 392
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.38 E-value=0.21 Score=46.68 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=29.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+..|+|+|+|.+|..+|..|...|++|+++|...
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 34689999999999999999999999999999763
No 393
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=92.34 E-value=0.18 Score=48.62 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=30.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
....|+|||||-+|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4568999999999999999999999999999753
No 394
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=92.33 E-value=0.86 Score=50.31 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=28.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~ 109 (664)
..+|+|||||.+|+-+|..+.+.|. +|++++..
T Consensus 281 gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 4689999999999999999999886 68866644
No 395
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.31 E-value=0.16 Score=52.52 Aligned_cols=30 Identities=30% Similarity=0.369 Sum_probs=29.0
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEcc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (664)
+|+|+|+|..|..+|..|++.|++|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999987
No 396
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.31 E-value=0.17 Score=52.27 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=30.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
++|+|+|+|..|...|..|++.|++|+++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 57999999999999999999999999999985
No 397
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=92.12 E-value=0.15 Score=50.83 Aligned_cols=35 Identities=31% Similarity=0.333 Sum_probs=28.8
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcC-------CeEEEEccCCc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKG-------FEVLVFEKDMS 111 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g-------~~~~~~~~~~~ 111 (664)
..+|+|||+|..||++|+.+.+.+ .+|+|++-+..
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 468999999999999999888854 57888875543
No 398
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.11 E-value=0.17 Score=54.63 Aligned_cols=34 Identities=26% Similarity=0.170 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
.+|.|||.|-.|+.+|..|+++|++|+++|+++.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 5799999999999999999999999999998653
No 399
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.11 E-value=0.18 Score=52.04 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
+|+|||+|-.|..+|..|++.|++|++++|+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5999999999999999999999999999985
No 400
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.04 E-value=0.2 Score=51.50 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 401
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.85 E-value=0.45 Score=53.97 Aligned_cols=103 Identities=19% Similarity=0.301 Sum_probs=76.2
Q ss_pred hcCCcEEEEecCCCCCCCCCeEEeeccCCCCEEecCCCCCCCCcceeEeCCCcccccceEEEEE-CCEEEEEECCCCcee
Q 006025 525 AMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYK-DGAFYLIDLQSEHGT 603 (664)
Q Consensus 525 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~-~~~~~~~Dl~S~nGt 603 (664)
..+..++++-...+...+.-..+. -+...+||-..+ -+|++..-.|=++||.|..+ ++.+++..+.++ -+
T Consensus 441 v~dDK~ylvnlnadP~lnellvyy---l~~~tlig~~~~-----~~i~l~glgi~p~h~vidI~~dg~l~~~p~~~~-R~ 511 (1714)
T KOG0241|consen 441 VGDDKCYLVNLNADPALNELLVYY---LKDHTLIGLFKS-----QDIQLSGLGIQPKHCVIDIESDGELRLTPLLNA-RS 511 (1714)
T ss_pred ccccceEEEeccCCccHHHHHHHh---hcCceeeccccC-----cceeeecCcccCccceeeeccCCcEEecccccc-ee
Confidence 566677777665444322222222 167789997777 89999999999999999988 666999888665 89
Q ss_pred EEeCCCCceeecCCCCcEEeCCCCEEEECCCceeEEEEEEec
Q 006025 604 YVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIG 645 (664)
Q Consensus 604 ~vn~~~~~~~~l~~~~~~~l~~gd~i~~g~~~~~~~~~~~~~ 645 (664)
+|||. .+. ++..|.+||+|-.|... -|++-.++
T Consensus 512 ~VNGs-----~v~--~~t~L~~GdRiLwGnnH--FFrvN~PK 544 (1714)
T KOG0241|consen 512 CVNGS-----LVC--STTQLWHGDRILWGNNH--FFRVNLPK 544 (1714)
T ss_pred eecCc-----eec--cccccccCceEEecccc--eEEecCcc
Confidence 99998 555 45789999999999975 36666553
No 402
>PRK07233 hypothetical protein; Provisional
Probab=91.80 E-value=8 Score=41.90 Aligned_cols=33 Identities=45% Similarity=0.754 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+|+|||||++||++|..|+++|++|+|+|+...
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~ 33 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQ 33 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCC
Confidence 589999999999999999999999999999864
No 403
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.79 E-value=0.26 Score=47.46 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=31.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
...+|+|||+|-.|...|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 35689999999999999999999999 699999873
No 404
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.57 E-value=0.24 Score=44.33 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=30.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCCc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDMS 111 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~~ 111 (664)
..+|+|+|+|-.|..+|..|++.|+ +++|+|.+.-
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcce
Confidence 3579999999999999999999999 7999998753
No 405
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.55 E-value=0.23 Score=50.72 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 369999999999999999999999999999764
No 406
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.52 E-value=0.21 Score=44.75 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
++|+|+|+.+.++|..++..|++|+|+|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999997754
No 407
>PRK04148 hypothetical protein; Provisional
Probab=91.29 E-value=0.23 Score=44.00 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+|++||.| .|...|..|++.|++|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 579999999 99999999999999999999764
No 408
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.23 E-value=0.28 Score=50.81 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKG--FEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~ 110 (664)
+|.|||+|.+|+++|+.|+.+| .++.++|+..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 6999999999999999999999 4899999864
No 409
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=91.21 E-value=1.5 Score=53.08 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=29.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~ 109 (664)
..+|+|||+|+.|+.+|..|++.|. .|+|+|..
T Consensus 317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~ 350 (985)
T TIGR01372 317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR 350 (985)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence 4689999999999999999999995 57899865
No 410
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=91.17 E-value=0.84 Score=48.71 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=32.4
Q ss_pred EEeCCeEEEEEeeCCeEEEEEcCCcEEeccEEEEecCCchhh
Q 006025 205 ILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKV 246 (664)
Q Consensus 205 i~~~~~v~~v~~~~~~v~v~~~~g~~i~adlvVgADG~~S~v 246 (664)
+++++.|+.++.... +|.+.+|+++.++.+|.|.|. |+.
T Consensus 144 ~~~~t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs-~~~ 182 (478)
T KOG1336|consen 144 LILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGS-SAK 182 (478)
T ss_pred EEEcceeEEeecccc--EEEeCCCceeecceEEEeecC-ccc
Confidence 667999999987654 567889999999999999999 443
No 411
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=91.10 E-value=0.5 Score=52.78 Aligned_cols=36 Identities=31% Similarity=0.361 Sum_probs=31.1
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
-+.++|+|||+|.+|+-.|..|++...+|.+.-|..
T Consensus 181 f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 181 FKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred cCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 345789999999999999999999999999988764
No 412
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.02 E-value=0.27 Score=53.94 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=31.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999999864
No 413
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.96 E-value=0.43 Score=42.75 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=31.5
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCe-EEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~ 110 (664)
+...|+|+|+|-+|..++..|+..|.+ |+|+.|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 456899999999999999999999997 99998863
No 414
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.93 E-value=0.35 Score=41.85 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 80 ILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
|+|+|.|..|..+|..|.+.+.+|+++|+++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence 79999999999999999998889999998753
No 415
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=90.87 E-value=0.28 Score=47.13 Aligned_cols=35 Identities=29% Similarity=0.426 Sum_probs=29.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...+|+|||+|.++.-+|..|++.|.+|+++=|.+
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 35789999999999999999999999999998864
No 416
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.73 E-value=0.4 Score=44.67 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=31.1
Q ss_pred CCcCcEEEECCCH-HHHHHHHHHHHcCCeEEEEccC
Q 006025 75 NKKLRILVAGGGI-GGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 75 ~~~~~v~i~g~g~-~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
-..++|+|||+|- +|..+|..|.++|.+|+++.|.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 3567999999995 7999999999999999999975
No 417
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.72 E-value=0.31 Score=51.32 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
.+|.|||+|..|...|..|++.|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 36999999999999999999999999999975
No 418
>PRK12831 putative oxidoreductase; Provisional
Probab=90.71 E-value=0.31 Score=53.61 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=31.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...+|+|||||.+|+-+|..|.+.|.+|+++++..
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34689999999999999999999999999999763
No 419
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=90.60 E-value=0.3 Score=55.14 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|||||++|+.+|..|++.|.+|+++++.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 4689999999999999999999999999999863
No 420
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=90.52 E-value=0.35 Score=49.95 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-eEEEEccC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~ 109 (664)
.+|.|||+|..|...|..|+.+|+ +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 479999999999999999999887 89999974
No 421
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.51 E-value=0.36 Score=51.30 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=31.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...+|+|+|+|.+|+.+|..|.+.|.+|+++|++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 34679999999999999999999999999999864
No 422
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.46 E-value=0.41 Score=48.12 Aligned_cols=35 Identities=29% Similarity=0.253 Sum_probs=31.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
....|+|||+|-+|..+|..|++.|+ +++|+|.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 34689999999999999999999995 899999764
No 423
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=90.43 E-value=0.37 Score=49.57 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+|.|||+|..|...|..|++.|++|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 424
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.40 E-value=0.41 Score=49.57 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=31.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.++|.|||+|-.|..+|..|++.|++|++++|..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999999999999999999999999999864
No 425
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.40 E-value=0.29 Score=53.05 Aligned_cols=33 Identities=33% Similarity=0.337 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+|.|||.|..|+.+|..|++.|++|+++|+++.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 599999999999999999999999999998753
No 426
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.39 E-value=0.38 Score=49.93 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+|.|||+|..|...|..|++.|++|+++|+..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 469999999999999999999999999999764
No 427
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=90.27 E-value=1 Score=47.39 Aligned_cols=95 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred cEEEECCCHHHHHHHHHHHHc--------------CCeEEEEccCCccccCCCCcccceeeCchHHHHHHhcChhHHHHH
Q 006025 79 RILVAGGGIGGLVFALAAKRK--------------GFEVLVFEKDMSAIRGEGQYRGPIQIQSNALAALEAIDLDVAEEV 144 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~--------------g~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~L~~l~~g~~~~~ 144 (664)
.++||||||.|...|..|+.- -++|+++|..+ .+..-+
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d----------------------------~iL~mF 271 (491)
T KOG2495|consen 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD----------------------------HILNMF 271 (491)
T ss_pred EEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch----------------------------hHHHHH
Q ss_pred HHhccccCccccccccCCCCceeeeccCCCcccccCCCeEEeeCHHHHHHHHHHhcCCceEEeCCeEEEEEeeCCeEEEE
Q 006025 145 MRAGCVTGDRINGLVDGISGSWYIKFDTFTPAAEKGLPVTRVISRMTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVV 224 (664)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~ 224 (664)
...-. ++.+-+.++.+.. +..++.|..++ +..+.+.
T Consensus 272 dkrl~-----------------------------------------~yae~~f~~~~I~-~~~~t~Vk~V~--~~~I~~~ 307 (491)
T KOG2495|consen 272 DKRLV-----------------------------------------EYAENQFVRDGID-LDTGTMVKKVT--EKTIHAK 307 (491)
T ss_pred HHHHH-----------------------------------------HHHHHHhhhccce-eecccEEEeec--CcEEEEE
Q ss_pred EcCC--cEEeccEEEEecCCchh
Q 006025 225 LENG--QCYAGDLLIGADGIWSK 245 (664)
Q Consensus 225 ~~~g--~~i~adlvVgADG~~S~ 245 (664)
..|| +++.+-++|.|.|....
T Consensus 308 ~~~g~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 308 TKDGEIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred cCCCceeeecceEEEecCCCCCc
No 428
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=90.21 E-value=0.37 Score=51.00 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCe-EEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~ 110 (664)
..|+|||+|+.|+.+|..|.+.|.+ |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 5899999999999999999999997 99999753
No 429
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.21 E-value=0.37 Score=50.38 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|.|||+|..|.++|..|++.|++|++++|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 59999999999999999999999999999853
No 430
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=90.20 E-value=0.5 Score=49.03 Aligned_cols=35 Identities=20% Similarity=0.502 Sum_probs=31.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCC--eEEEEccC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKD 109 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~--~~~~~~~~ 109 (664)
....+|.|||+|-+|.++|+.|+..|+ ++.|+|..
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 345699999999999999999999998 79999975
No 431
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.18 E-value=0.54 Score=42.47 Aligned_cols=33 Identities=21% Similarity=0.517 Sum_probs=29.5
Q ss_pred CcEEEECC-CHHHHHHHHHHHHcCC--eEEEEccCC
Q 006025 78 LRILVAGG-GIGGLVFALAAKRKGF--EVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~-g~~g~~~a~~l~~~g~--~~~~~~~~~ 110 (664)
.+|.|||+ |.+|.++|..|...++ ++.|+|...
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 37999999 9999999999999976 799999863
No 432
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.15 E-value=0.44 Score=49.90 Aligned_cols=33 Identities=30% Similarity=0.493 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
++|.|||+|..|...|..|++.|++|++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999863
No 433
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.00 E-value=0.53 Score=48.97 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=31.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
+..+|+|||+|-+|..+|..|+..|+ ++.|+|..+
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 34689999999999999999999996 999999864
No 434
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.78 E-value=0.37 Score=53.01 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=31.6
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|+|+|++|+.++..+...|.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5689999999999999999999999999999865
No 435
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=89.65 E-value=0.48 Score=49.60 Aligned_cols=35 Identities=26% Similarity=0.449 Sum_probs=31.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 34689999999999999999999999 899999874
No 436
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=89.51 E-value=16 Score=40.61 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeE-EEEEcCC-----cEEeccEEEEecCCchh
Q 006025 190 MTLQQILAKAVG--DEIILNESNVIDFKDHGDKV-SVVLENG-----QCYAGDLLIGADGIWSK 245 (664)
Q Consensus 190 ~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v-~v~~~~g-----~~i~adlvVgADG~~S~ 245 (664)
..|-+.|.+.+. ...|+.+++|++|..+++.+ .+.+.++ ++++||.||.+-..+..
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~ 295 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANLPPQSL 295 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECCCHHHH
Confidence 346666666652 23588999999998877653 2444443 57899999988776543
No 437
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.15 E-value=0.54 Score=50.35 Aligned_cols=34 Identities=32% Similarity=0.240 Sum_probs=31.2
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...|+|+|+|+.|+.+|..|...|.+|+++|.++
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 4689999999999999999999999999999763
No 438
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.93 E-value=0.54 Score=49.06 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|.|||+|..|...|..|++.|++|+++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 69999999999999999999999999999863
No 439
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=88.89 E-value=0.51 Score=48.13 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=29.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|.|||.|..|.++|..|.++|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 59999999999999999999999999999863
No 440
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.68 E-value=0.69 Score=44.63 Aligned_cols=35 Identities=23% Similarity=0.328 Sum_probs=31.7
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
...+|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 35689999999999999999999998 899999864
No 441
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.60 E-value=0.61 Score=43.26 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
.+|-|||-|-.|...|..|.++|++|.++|+.+.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence 4799999999999999999999999999998753
No 442
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.43 E-value=0.54 Score=50.25 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+|.|||.|..|+.+|..|+. |++|+++|++..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 59999999999999998885 999999998753
No 443
>PLN02976 amine oxidase
Probab=88.43 E-value=40 Score=42.02 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCceEEeCCeEEEEEee----------CCeEEEEEcCCcEEeccEEEEecC
Q 006025 191 TLQQILAKAVGDEIILNESNVIDFKDH----------GDKVSVVLENGQCYAGDLLIGADG 241 (664)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~v~~~----------~~~v~v~~~~g~~i~adlvVgADG 241 (664)
.|.+.|.+.+. |++++.|+.|... +++|.|++.+|++++||.||.+==
T Consensus 937 qLIeALAe~L~---IrLNtpVtrId~s~~d~~~~~s~~dGVtVtTsDGetftADaVIVTVP 994 (1713)
T PLN02976 937 NVVESLAEGLD---IHLNHVVTDVSYGSKDAGASGSSRKKVKVSTSNGSEFLGDAVLITVP 994 (1713)
T ss_pred HHHHHHHhhCC---eecCCeEEEEEecCCcccccccCCCcEEEEECCCCEEEeceEEEeCC
Confidence 45556666553 7889999999874 467999999999999999998754
No 444
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.41 E-value=0.65 Score=50.93 Aligned_cols=34 Identities=24% Similarity=0.222 Sum_probs=30.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...|+|+|+|..|+++|..|++.|++|++.|+..
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3579999999999999999999999999999753
No 445
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.40 E-value=0.67 Score=48.57 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=31.8
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 34689999999999999999999999 899999864
No 446
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=88.39 E-value=0.83 Score=43.97 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=31.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
..+.|+|+|.|-.|..+|..|.+.|++|+++|++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3467999999999999999999999999999875
No 447
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.38 E-value=0.61 Score=49.24 Aligned_cols=34 Identities=32% Similarity=0.427 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC-CeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~~ 111 (664)
.+|+|||+|-+|.++|..|+++| .+|+|.+|...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 47999999999999999999999 89999999753
No 448
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=88.30 E-value=0.65 Score=51.59 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 449
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.23 E-value=0.67 Score=45.35 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=29.1
Q ss_pred cEEEEC-CCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAG-GGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g-~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|.||| +|..|.++|..|++.|++|+++++.+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 599997 79999999999999999999998753
No 450
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.19 E-value=0.75 Score=50.39 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=31.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...|+|+|.|.+|+++|..|+++|++|+++|...
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3579999999999999999999999999999754
No 451
>PRK06223 malate dehydrogenase; Reviewed
Probab=88.14 E-value=0.69 Score=47.90 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
.+|.|||+|..|..+|..|+..|+ +|.++|...
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 489999999999999999999876 999999853
No 452
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=88.10 E-value=2.7 Score=44.61 Aligned_cols=54 Identities=17% Similarity=0.149 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcC--CceEEeCCeEEEEEeeCCeEEEEEcCC-cEEeccEEEEecCCch
Q 006025 189 RMTLQQILAKAVG--DEIILNESNVIDFKDHGDKVSVVLENG-QCYAGDLLIGADGIWS 244 (664)
Q Consensus 189 r~~l~~~L~~~~~--~~~i~~~~~v~~v~~~~~~v~v~~~~g-~~i~adlvVgADG~~S 244 (664)
-..+..+|..++. ...++++++|+++ +++++.+.+.++ ..++||-||.|.|..|
T Consensus 85 A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 85 AAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGTLRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCcEEEEECCCceEEecCEEEEcCCCcc
Confidence 3456666666552 2358899999999 334567776543 5799999999999876
No 453
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.01 E-value=0.58 Score=51.85 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
.+|.|||+|..|...|..|++.|++|+++|+.+.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e 39 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE 39 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4699999999999999999999999999998753
No 454
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=87.87 E-value=0.77 Score=43.13 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCe-EEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~ 110 (664)
+|+|||+|-.|...|..|++.|+. ++|+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999994 99999874
No 455
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=87.85 E-value=0.78 Score=45.68 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=31.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
...++|+|+|+.+..+|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999996643
No 456
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=87.85 E-value=0.73 Score=47.67 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcC--CeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKG--FEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~ 110 (664)
+|+|||+|-+|.++|..|+..| .++.++|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999999 5899999864
No 457
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=87.82 E-value=0.62 Score=51.08 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHcC--CeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKG--FEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g--~~~~~~~~~~~ 111 (664)
++|.|||.|-+|+.+|..||++| ++|+.+|.++.
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 46999999999999999999984 78999998653
No 458
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=87.80 E-value=11 Score=40.40 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=33.6
Q ss_pred eEEeCCeEEEEEeeCCeEEEEE-cCCcEEeccEEEEecCCch
Q 006025 204 IILNESNVIDFKDHGDKVSVVL-ENGQCYAGDLLIGADGIWS 244 (664)
Q Consensus 204 ~i~~~~~v~~v~~~~~~v~v~~-~~g~~i~adlvVgADG~~S 244 (664)
.|+++++|++|+.+++++++.. .+|+++.||.||.|.-...
T Consensus 213 ~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~ 254 (419)
T TIGR03467 213 EVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRH 254 (419)
T ss_pred EEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHH
Confidence 5889999999999888876654 4678899999999876654
No 459
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=87.67 E-value=0.62 Score=51.67 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=30.4
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|.|||+|..|...|..|++.|++|+++|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999864
No 460
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.66 E-value=0.69 Score=50.90 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+|+|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 479999999999999999999999999999764
No 461
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.59 E-value=0.8 Score=47.41 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCC--eEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~--~~~~~~~~~ 110 (664)
.+|.|||+|..|.++|..|.+.|+ +|+++++.+
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999995 899998863
No 462
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.43 E-value=0.87 Score=45.20 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=31.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 34689999999999999999999998 788999764
No 463
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=87.33 E-value=0.95 Score=40.87 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
+|+|||.|-.|...|..|++.|+ +++|+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999999 799999764
No 464
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=87.29 E-value=0.67 Score=50.03 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHc----CCeEEEEccCCc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRK----GFEVLVFEKDMS 111 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~----g~~~~~~~~~~~ 111 (664)
..++-|||+|+|+|++|..|-|- |-+++|+|+...
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~ 40 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDV 40 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence 35788999999999999999886 569999998753
No 465
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.15 E-value=0.91 Score=46.66 Aligned_cols=35 Identities=29% Similarity=0.290 Sum_probs=32.2
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...+|+|+|.|.+|..+|..|.+.|.+|+++++++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 35789999999999999999999999999999874
No 466
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=87.04 E-value=0.93 Score=46.28 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=30.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~ 109 (664)
..+|+|+|+|-+|.++|..|++.|. +|+|++|.
T Consensus 127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4689999999999999999999998 79999986
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=87.02 E-value=1 Score=43.09 Aligned_cols=33 Identities=30% Similarity=0.406 Sum_probs=29.9
Q ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~-g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
..+++|+|| |.+|..+|..|++.|.+|+++.|+
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 457999997 999999999999999999999875
No 468
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=86.98 E-value=0.59 Score=50.39 Aligned_cols=32 Identities=28% Similarity=0.203 Sum_probs=26.2
Q ss_pred CcEEEEccCcCcCCCCCccchhHHHHHHHHHHHHH
Q 006025 363 GRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVEL 397 (664)
Q Consensus 363 ~rv~LvGDAAh~~~P~~GqG~n~al~Da~~La~~L 397 (664)
+|++++||..+..++ .|++-|+.++...|+.|
T Consensus 418 ~~l~~aG~~~~~~~~---~~~~gA~~sG~~aA~~i 449 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYP---GGIEGAILSGRRAAEEI 449 (450)
T ss_dssp TTEEE-SGGGSSSST---TSHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCC---CcHHHHHHHHHHHHHHh
Confidence 599999998766555 69999999999998876
No 469
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=86.93 E-value=0.44 Score=42.02 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=27.9
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEcc
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (664)
....+|.|||+|-+|..+|..|.+.|+.|.-+..
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVVGVYS 41 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEEEESS
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 3467999999999999999999999999987754
No 470
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.89 E-value=0.98 Score=43.92 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=31.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCe-EEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~ 110 (664)
....|+|||+|-.|..+|..|++.|+. ++|+|.+.
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 356899999999999999999999995 99999864
No 471
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=86.77 E-value=1 Score=44.94 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=31.4
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
...+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35689999999999999999999998 799999764
No 472
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=86.76 E-value=0.56 Score=47.15 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=31.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+-+|+|+|||.+|..+|..+...|-+|+|+|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 34689999999999999999999999999999864
No 473
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.76 E-value=1.2 Score=47.57 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=32.2
Q ss_pred CCcCcEEEECC-CHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 75 NKKLRILVAGG-GIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 75 ~~~~~v~i~g~-g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
...++|+|.|| |..|..++..|.++|++|+.+++..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 35578999999 9999999999999999999999753
No 474
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.71 E-value=1 Score=46.56 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=30.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCC--eEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGF--EVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~--~~~~~~~~~ 110 (664)
+.+|.|||+|-+|.++|+.|+..|+ ++.|+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 4589999999999999999999987 689999753
No 475
>PTZ00117 malate dehydrogenase; Provisional
Probab=86.65 E-value=1 Score=46.87 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=31.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcC-CeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKG-FEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g-~~~~~~~~~~ 110 (664)
+..+|.|||+|-+|.++|..|+..| .++.|+|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 3468999999999999999999999 5899999864
No 476
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=86.65 E-value=0.99 Score=46.50 Aligned_cols=36 Identities=19% Similarity=0.330 Sum_probs=33.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..+||+|+|-|+.=..++.+|+..|.+|+.+|+++.
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~ 40 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDY 40 (434)
T ss_pred ccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCc
Confidence 369999999999999999999999999999999864
No 477
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.62 E-value=0.93 Score=46.30 Aligned_cols=35 Identities=37% Similarity=0.486 Sum_probs=32.5
Q ss_pred CCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 75 NKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 75 ~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
...+|-+|||||-.|++.|+..+..|.+|.|+|..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~ 52 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP 52 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC
Confidence 45799999999999999999999999999999964
No 478
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.59 E-value=1.6 Score=35.49 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=29.6
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHc-CCeEEEEcc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRK-GFEVLVFEK 108 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~-g~~~~~~~~ 108 (664)
...+++|+|.|-+|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 345799999999999999999998 678999998
No 479
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=86.48 E-value=0.92 Score=48.48 Aligned_cols=35 Identities=34% Similarity=0.364 Sum_probs=32.0
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
....|+|+|.|+.|..+|..|...|.+|+++|.++
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 35689999999999999999999999999999765
No 480
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.46 E-value=0.93 Score=50.27 Aligned_cols=32 Identities=34% Similarity=0.454 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
..|+|+|.|..|++++..|.++|.+|++.|..
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999964
No 481
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=86.37 E-value=0.8 Score=49.39 Aligned_cols=36 Identities=31% Similarity=0.298 Sum_probs=32.7
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCcc
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMSA 112 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~~ 112 (664)
.++|+|+|-|..|+++|..|.++|++|+++|.++.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 568999999999999999999999999999976543
No 482
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=86.35 E-value=1.1 Score=41.24 Aligned_cols=34 Identities=35% Similarity=0.274 Sum_probs=27.9
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+.++|+|-|..|..+|..|+..|.+|+|.|.+|
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4579999999999999999999999999999875
No 483
>PLN02576 protoporphyrinogen oxidase
Probab=86.13 E-value=32 Score=38.14 Aligned_cols=51 Identities=20% Similarity=0.294 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCceEEeCCeEEEEEeeCCe-EEEEEc--CC-cEEeccEEEEecC
Q 006025 191 TLQQILAKAVGDEIILNESNVIDFKDHGDK-VSVVLE--NG-QCYAGDLLIGADG 241 (664)
Q Consensus 191 ~l~~~L~~~~~~~~i~~~~~v~~v~~~~~~-v~v~~~--~g-~~i~adlvVgADG 241 (664)
.|-+.|.+.++...++.+++|++|+..+++ +.|++. +| ++++||.||.|--
T Consensus 240 ~L~~~la~~l~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~P 294 (496)
T PLN02576 240 TLPDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAP 294 (496)
T ss_pred HHHHHHHHhhCcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEECCC
Confidence 466777777753358899999999988776 666654 45 4799999999864
No 484
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.94 E-value=9.1 Score=40.37 Aligned_cols=47 Identities=26% Similarity=0.256 Sum_probs=36.8
Q ss_pred eEEeCCeEEEEEeeCCe-EEEEEcCC-----cEEeccEEEEecCCchhhhhhh
Q 006025 204 IILNESNVIDFKDHGDK-VSVVLENG-----QCYAGDLLIGADGIWSKVRKNL 250 (664)
Q Consensus 204 ~i~~~~~v~~v~~~~~~-v~v~~~~g-----~~i~adlvVgADG~~S~vR~~l 250 (664)
.++.+++|.+++..+++ +.+++.+. ++++.|.||.|.|-+-.+-.++
T Consensus 294 ~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 294 RLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred eeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 47788999999988877 77776532 5799999999999985555544
No 485
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=85.77 E-value=0.88 Score=46.70 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
+|.|||.|..|..+|..|++.|++|+++++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999999874
No 486
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=85.74 E-value=1.2 Score=43.82 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=31.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
..+|+|||.|-.|...|..|++.|+ +++|+|.+.
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4689999999999999999999998 788999764
No 487
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=85.71 E-value=0.9 Score=52.79 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=31.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
..|.|||+|..|...|..++..|++|+++|.+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence 5799999999999999999999999999998743
No 488
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.58 E-value=1 Score=48.90 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 78 LRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 78 ~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
.+|+|||-|..|+++|..|.++|++|+++|++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 479999999999999999999999999999753
No 489
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.45 E-value=1.1 Score=49.34 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=30.4
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKD 109 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~ 109 (664)
...|+|+|.|-+|+++|..|.+.|++|++.|+.
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 346999999999999999999999999999975
No 490
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=85.43 E-value=0.93 Score=53.26 Aligned_cols=34 Identities=32% Similarity=0.383 Sum_probs=31.0
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCe-EEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFE-VLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~-~~~~~~~~ 110 (664)
..+|+|||||.+|+-+|..|.+.|.+ |+|+++..
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999997 99999763
No 491
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.41 E-value=1.1 Score=49.29 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=31.3
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
..+|+|+|+|++|+.++..+...|.+|+++|++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999864
No 492
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=85.40 E-value=1.2 Score=45.45 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=31.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
....|+|+|.|-+|..+|..|+..|.+|++++|..
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 34689999999999999999999999999999864
No 493
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.40 E-value=0.94 Score=49.72 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 79 RILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 79 ~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
+|+|+|+|..|..+|..|.+.|++|+++|+++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 699999999999999999999999999998653
No 494
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.35 E-value=0.97 Score=52.45 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=32.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCCc
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDMS 111 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~~ 111 (664)
.-..|.|||+|..|...|..++..|++|+++|.+..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~ 347 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH 347 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 345799999999999999999999999999998753
No 495
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=85.07 E-value=1 Score=46.36 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 80 ILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 80 v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
|.|||+|-.|..+|..|+.+|+ +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999987 999999863
No 496
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.05 E-value=1.3 Score=47.65 Aligned_cols=35 Identities=31% Similarity=0.216 Sum_probs=31.9
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcCCeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKGFEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~~~ 110 (664)
....|+|+|.|..|..+|..|...|.+|+++|+++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 34689999999999999999999999999999864
No 497
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.04 E-value=1.4 Score=43.38 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=31.1
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
...|+|||.|-.|..+|..|++.|+ +++|+|.+.
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4689999999999999999999999 899999764
No 498
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=84.91 E-value=1.4 Score=43.58 Aligned_cols=35 Identities=20% Similarity=0.379 Sum_probs=30.3
Q ss_pred CcCcEEEECCCHHHHHHHHHHHHcC-----------CeEEEEccCC
Q 006025 76 KKLRILVAGGGIGGLVFALAAKRKG-----------FEVLVFEKDM 110 (664)
Q Consensus 76 ~~~~v~i~g~g~~g~~~a~~l~~~g-----------~~~~~~~~~~ 110 (664)
.+.+|+|||+|-.|..++..|++.| .+++|+|.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 4578999999999999999999974 3899999764
No 499
>PRK08328 hypothetical protein; Provisional
Probab=84.89 E-value=1.4 Score=43.46 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=30.5
Q ss_pred cCcEEEECCCHHHHHHHHHHHHcCC-eEEEEccCC
Q 006025 77 KLRILVAGGGIGGLVFALAAKRKGF-EVLVFEKDM 110 (664)
Q Consensus 77 ~~~v~i~g~g~~g~~~a~~l~~~g~-~~~~~~~~~ 110 (664)
..+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 4679999999999999999999998 688998764
No 500
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=84.75 E-value=1.2 Score=43.48 Aligned_cols=35 Identities=26% Similarity=0.506 Sum_probs=30.7
Q ss_pred CCCcCcEEEECCCHHHHHHHHHHHHcCCeEEEEcc
Q 006025 74 ENKKLRILVAGGGIGGLVFALAAKRKGFEVLVFEK 108 (664)
Q Consensus 74 ~~~~~~v~i~g~g~~g~~~a~~l~~~g~~~~~~~~ 108 (664)
..+...|+|||||.+++-=+..|.+.|-+|+|+-.
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap 56 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSK 56 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 34457899999999999999999999999999953
Done!