BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006028
         (664 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1
          Length = 130

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 128 FCKILTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQELAAKDLHGYEWRFKHIFRGQ 187
           F K +T SD        + + HA +  P     ++     L  +D++G  WRF++ +   
Sbjct: 14  FEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNS 73

Query: 188 PRRHLLTTGWSTFVTSKRLVAGDAFVFLR--GENGELRVG 225
            + ++LT GWS FV  K L AGD   F R  G++ +L +G
Sbjct: 74  SQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIG 113


>pdb|3SHM|A Chain A, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|B Chain B, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|C Chain C, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|D Chain D, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|E Chain E, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|F Chain F, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|G Chain G, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|H Chain H, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|I Chain I, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|J Chain J, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|K Chain K, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|L Chain L, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|M Chain M, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|N Chain N, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|O Chain O, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|P Chain P, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|Q Chain Q, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|R Chain R, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|S Chain S, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3SHM|T Chain T, Structure-Function Analysis Of Receptor Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
          Length = 516

 Score = 31.2 bits (69), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 390 GSTQSHDITQVVGATEGQSSESQVVRP---MRQKEIDSTIINNNSTDDHRIVAAQSVLSG 446
           GS Q+ D+    G+  G S + +   P    RQ+ +  T  +NN+++     A++  L+G
Sbjct: 234 GSAQNKDLLFSRGSPAGMSVQPKNWLPGPCYRQQRVSKTKTDNNNSNFTWTGASKYNLNG 293

Query: 447 YASSGRPGNTVIHEEVERGKKSEASLGCWLFGIDLKHNSNTA 488
             S   PG  +   + ++ K    S G  +FG +    SNTA
Sbjct: 294 RESIINPGTAMASHKDDKDKFFPMS-GVMIFGKESAGASNTA 334


>pdb|1VU0|U Chain U, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|V Chain V, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|W Chain W, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|X Chain X, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|Y Chain Y, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|Z Chain Z, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|AA Chain a, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|BB Chain b, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|CC Chain c, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|DD Chain d, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|EE Chain e, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|FF Chain f, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|GG Chain g, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|HH Chain h, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|II Chain i, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|JJ Chain j, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|KK Chain k, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|LL Chain l, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|MM Chain m, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU0|NN Chain n, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|OO Chain o, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|PP Chain p, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|QQ Chain q, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|RR Chain r, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|SS Chain s, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|TT Chain t, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|UU Chain u, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|VV Chain v, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|WW Chain w, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|XX Chain x, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|YY Chain y, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|ZZ Chain z, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|0 Chain 0, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|1 Chain 1, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|2 Chain 2, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|3 Chain 3, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|4 Chain 4, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|5 Chain 5, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|6 Chain 6, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|1VU1|7 Chain 7, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|A Chain A, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|B Chain B, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|C Chain C, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|D Chain D, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|E Chain E, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|F Chain F, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|G Chain G, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|H Chain H, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|I Chain I, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|J Chain J, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|K Chain K, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|L Chain L, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|M Chain M, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|N Chain N, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|O Chain O, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|P Chain P, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|Q Chain Q, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|R Chain R, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|S Chain S, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
 pdb|3TSX|T Chain T, Structure-Function Analysis Of Receptor-Binding In
           Adeno-Associated Virus Serotype 6 (Aav-6)
          Length = 520

 Score = 31.2 bits (69), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 390 GSTQSHDITQVVGATEGQSSESQVVRP---MRQKEIDSTIINNNSTDDHRIVAAQSVLSG 446
           GS Q+ D+    G+  G S + +   P    RQ+ +  T  +NN+++     A++  L+G
Sbjct: 238 GSAQNKDLLFSRGSPAGMSVQPKNWLPGPCYRQQRVSKTKTDNNNSNFTWTGASKYNLNG 297

Query: 447 YASSGRPGNTVIHEEVERGKKSEASLGCWLFGIDLKHNSNTA 488
             S   PG  +   + ++ K    S G  +FG +    SNTA
Sbjct: 298 RESIINPGTAMASHKDDKDKFFPMS-GVMIFGKESAGASNTA 338


>pdb|3OAH|A Chain A, Structural Characterization Of The Dual Glycan Binding
           Adeno- Associated Virus Serotype 6
          Length = 534

 Score = 31.2 bits (69), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)

Query: 390 GSTQSHDITQVVGATEGQSSESQVVRP---MRQKEIDSTIINNNSTDDHRIVAAQSVLSG 446
           GS Q+ D+    G+  G S + +   P    RQ+ +  T  +NN+++     A++  L+G
Sbjct: 252 GSAQNKDLLFSRGSPAGMSVQPKNWLPGPCYRQQRVSKTKTDNNNSNFTWTGASKYNLNG 311

Query: 447 YASSGRPGNTVIHEEVERGKKSEASLGCWLFGIDLKHNSNTA 488
             S   PG  +   + ++ K    S G  +FG +    SNTA
Sbjct: 312 RESIINPGTAMASHKDDKDKFFPMS-GVMIFGKESAGASNTA 352


>pdb|3NG9|A Chain A, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|B Chain B, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|C Chain C, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|D Chain D, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|E Chain E, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|F Chain F, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|G Chain G, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|H Chain H, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|I Chain I, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
 pdb|3NG9|J Chain J, Structure To Function Correlations For Adeno-Associated
           Virus Serotype 1
          Length = 736

 Score = 30.8 bits (68), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 390 GSTQSHDITQVVGATEGQSSESQVVRP---MRQKEIDSTIINNNSTDDHRIVAAQSVLSG 446
           GS Q+ D+    G+  G S + +   P    RQ+ +  T  +NN+++     A++  L+G
Sbjct: 454 GSAQNKDLLFSRGSPAGMSVQPKNWLPGPCYRQQRVSKTKTDNNNSNFTWTGASKYNLNG 513

Query: 447 YASSGRPGNTVIHEEVERGKKSEASLGCWLFGIDLKHNSNTA 488
             S   PG  +   + +  K    S G  +FG +    SNTA
Sbjct: 514 RESIINPGTAMASHKDDEDKFFPMS-GVMIFGKESAGASNTA 554


>pdb|3SK1|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
           From Enterobacter Agglomerans (Erwinia Herbicola,
           Pantoea Agglomerans) Eh1087, Apo Form
 pdb|3SK1|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
           From Enterobacter Agglomerans (Erwinia Herbicola,
           Pantoea Agglomerans) Eh1087, Apo Form
 pdb|3SK1|C Chain C, Crystal Structure Of Phenazine Resistance Protein Ehpr
           From Enterobacter Agglomerans (Erwinia Herbicola,
           Pantoea Agglomerans) Eh1087, Apo Form
 pdb|3SK1|D Chain D, Crystal Structure Of Phenazine Resistance Protein Ehpr
           From Enterobacter Agglomerans (Erwinia Herbicola,
           Pantoea Agglomerans) Eh1087, Apo Form
 pdb|3SK2|A Chain A, Crystal Structure Of Phenazine Resistance Protein Ehpr
           From Enterobacter Agglomerans (Erwinia Herbicola,
           Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
           Acid
 pdb|3SK2|B Chain B, Crystal Structure Of Phenazine Resistance Protein Ehpr
           From Enterobacter Agglomerans (Erwinia Herbicola,
           Pantoea Agglomerans) Eh1087 In Complex With Griseoluteic
           Acid
          Length = 132

 Score = 29.3 bits (64), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 18  PGSGDLYRELWKACAGPLVEVPRNGERVYYFPQGH-IEQLEASTNQELTHQ 67
           P SGD    +W     P+ E+PR  E     P G  +++L     ++ +HQ
Sbjct: 50  PSSGDALFAIWSGGEEPVAEIPRFSEIGIMLPTGEDVDKLFNEWTKQKSHQ 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,686,059
Number of Sequences: 62578
Number of extensions: 814189
Number of successful extensions: 1581
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1580
Number of HSP's gapped (non-prelim): 6
length of query: 664
length of database: 14,973,337
effective HSP length: 105
effective length of query: 559
effective length of database: 8,402,647
effective search space: 4697079673
effective search space used: 4697079673
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)