Query 006028
Match_columns 664
No_of_seqs 348 out of 820
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 14:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 3.5E-29 1.2E-33 231.5 13.5 114 120-233 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.6 7.9E-16 2.7E-20 145.1 10.0 97 124-230 45-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.4 7E-13 2.4E-17 117.5 9.0 92 126-228 9-100 (104)
4 1wmh_B Partitioning defective- 95.4 0.063 2.2E-06 46.7 8.7 66 549-621 6-71 (86)
5 1na6_A Ecorii, restriction end 95.1 0.034 1.2E-06 60.1 7.2 93 124-217 17-123 (404)
6 1vd2_A Protein kinase C, IOTA 94.6 0.074 2.5E-06 46.5 6.9 60 548-613 5-64 (89)
7 1q1o_A Cell division control p 90.4 0.82 2.8E-05 40.6 7.7 74 549-622 5-85 (98)
8 2kkc_A Sequestosome-1; P62, PB 89.3 0.57 1.9E-05 41.9 5.8 64 549-618 5-83 (102)
9 2ktr_A Sequestosome-1; autopha 85.4 1.5 5.2E-05 40.1 6.4 63 548-618 19-98 (117)
10 1oey_A P67-PHOX, neutrophil cy 84.4 3.4 0.00011 35.7 7.7 70 551-628 7-79 (83)
11 1pqs_A Cell division control p 74.3 4.3 0.00015 34.4 5.1 60 563-622 4-64 (77)
12 2bkf_A Zinc-finger protein NBR 74.2 8.7 0.0003 33.5 7.0 55 551-612 8-62 (87)
13 1wj6_A KIAA0049 protein, RSGI 74.1 7.9 0.00027 34.6 6.9 64 551-623 16-79 (101)
14 1oey_J P40-PHOX, neutrophil cy 70.4 4 0.00014 36.6 4.2 41 566-613 28-68 (107)
15 3cgm_A SLYD, peptidyl-prolyl C 57.4 26 0.00091 32.8 7.5 98 206-319 3-110 (158)
16 3p8d_A Medulloblastoma antigen 38.9 34 0.0012 28.3 4.3 55 286-357 3-57 (67)
17 2kfw_A FKBP-type peptidyl-prol 38.3 33 0.0011 33.5 4.9 100 206-319 3-114 (196)
18 2kr7_A FKBP-type peptidyl-prol 36.5 1.1E+02 0.0037 28.2 8.0 103 203-319 4-119 (151)
19 1e8p_A Endoglucanase, dockerin 35.6 11 0.00036 29.3 0.7 15 596-610 19-33 (46)
20 2k8i_A SLYD, peptidyl-prolyl C 35.1 1.1E+02 0.0036 29.1 7.8 100 206-319 3-114 (171)
21 3o27_A Putative uncharacterize 31.7 29 0.00099 28.9 2.8 34 199-232 32-66 (68)
22 3qii_A PHD finger protein 20; 30.2 52 0.0018 28.5 4.2 55 287-358 19-73 (85)
23 1mhn_A SurviVal motor neuron p 29.6 50 0.0017 25.8 3.8 29 288-319 2-30 (59)
24 2e63_A KIAA1787 protein; struc 28.0 38 0.0013 32.3 3.4 25 203-227 115-139 (170)
25 2jng_A Cullin-7, CUL-7; P53 bi 26.5 59 0.002 29.2 4.0 70 278-359 10-79 (105)
26 4a4f_A SurviVal of motor neuro 25.6 64 0.0022 25.7 3.8 43 287-340 6-48 (64)
27 3s6w_A Tudor domain-containing 25.4 61 0.0021 24.8 3.5 28 289-319 1-28 (54)
28 2equ_A PHD finger protein 20-l 23.9 65 0.0022 26.9 3.6 40 287-339 7-46 (74)
29 4dt4_A FKBP-type 16 kDa peptid 22.7 1.9E+02 0.0065 27.4 7.1 103 205-319 24-138 (169)
30 2yue_A Protein neuralized; str 21.4 74 0.0025 30.3 4.0 21 207-227 107-127 (168)
31 1g5v_A SurviVal motor neuron p 20.4 88 0.003 26.9 3.9 30 287-319 8-37 (88)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=3.5e-29 Score=231.55 Aligned_cols=114 Identities=26% Similarity=0.445 Sum_probs=104.6
Q ss_pred CCCCceeeEEEecCccCCCCCCceEEecchhcccCCCCCCCCCCCCeEEEEeeCCCCeEEEEEEEcCCCceeeecccccc
Q 006028 120 PPKQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWST 199 (664)
Q Consensus 120 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~ 199 (664)
..++...+|+|+||+|||++++||+||+++|+.|||.++..+..++++|.++|.+|++|+|||+||+++|+|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 34567789999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred cccccCCCCCCEEEEEeCCC--CcEEEEEEEccccC
Q 006028 200 FVTSKRLVAGDAFVFLRGEN--GELRVGVRRLAHQQ 233 (664)
Q Consensus 200 FV~~K~L~aGD~VvF~R~~~--G~l~vGiRRa~~~~ 233 (664)
||++|+|++||.|+|++.++ +.|+|++||+....
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999764 57999999998654
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.62 E-value=7.9e-16 Score=145.14 Aligned_cols=97 Identities=20% Similarity=0.252 Sum_probs=84.6
Q ss_pred ceeeEEEecCccCCCCCCceEEecchhcccCCCCCCCCCCCCeEEEEeeCCCCeEEEEEEEcCCCceeeecccccccccc
Q 006028 124 TVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTS 203 (664)
Q Consensus 124 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~FV~~ 203 (664)
...+|.|+||+||+.+..+|.||+++|+.+||..+ +.+.+.|. |+.|.|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 44689999999999887789999999999999653 46788887 6999999999974 68999999999999
Q ss_pred cCCCCCCEEEEEeCCCC--cEEEEEEEcc
Q 006028 204 KRLVAGDAFVFLRGENG--ELRVGVRRLA 230 (664)
Q Consensus 204 K~L~aGD~VvF~R~~~G--~l~vGiRRa~ 230 (664)
++|++||.++|...++. .+.|.|-|+.
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 99999999999987765 4788888764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.39 E-value=7e-13 Score=117.50 Aligned_cols=92 Identities=20% Similarity=0.359 Sum_probs=78.9
Q ss_pred eeEEEecCccCCCCCCceEEecchhcccCCCCCCCCCCCCeEEEEeeCCCCeEEEEEEEcCCCceeeecccccccccccC
Q 006028 126 HSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTLATPTQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKR 205 (664)
Q Consensus 126 ~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yr~~~rr~lLTtGWs~FV~~K~ 205 (664)
..|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|+.|++++.+++ +++.|++||..||++++
T Consensus 9 p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~~ 77 (104)
T 1yel_A 9 VQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDNN 77 (104)
T ss_dssp EEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHHT
T ss_pred CCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHcC
Confidence 589999999994 459999999998765543 3478999999999999999874 47899999999999999
Q ss_pred CCCCCEEEEEeCCCCcEEEEEEE
Q 006028 206 LVAGDAFVFLRGENGELRVGVRR 228 (664)
Q Consensus 206 L~aGD~VvF~R~~~G~l~vGiRR 228 (664)
|++||.++|...++..+.|-|=+
T Consensus 78 L~~GD~lvF~~~~~~~f~V~If~ 100 (104)
T 1yel_A 78 LEDGKYLQFIYDRDRTFYVIIYG 100 (104)
T ss_dssp CCTTCEEEEEECSSSEEEEEEEC
T ss_pred CCCCCEEEEEEcCCCeEEEEEEC
Confidence 99999999999888888776654
No 4
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=95.41 E-value=0.063 Score=46.72 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=51.5
Q ss_pred CCeeEEEecCeeeeeeecCCCCCChHHHHHHHHHHHhhhcccCCCCCcEEEEecCCCCeEEecCCChHHHHhc
Q 006028 549 RTRTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDDQWPEFCKM 621 (664)
Q Consensus 549 ~~~vKV~meG~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~~ 621 (664)
.--||..-+++--==.+|-+...+|++|+..|+++|.+. .-.+.|.|+|.+||++-+-++ ++|.+.
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-----~~~f~i~Y~D~dGDLlpInnD--dnl~~A 71 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-----GLDVLLGYTDAHGDLLPLTND--DSLHRA 71 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-----TCCCEEEEECTTSCEEECCSH--HHHHHH
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-----CCCEEEEEECCCCCEeeecCH--HHHHHH
Confidence 346788888864333667677889999999999999853 345899999999999998877 777543
No 5
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.06 E-value=0.034 Score=60.08 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=66.5
Q ss_pred ceeeEEEecCccCCCCCC----ceEEecchhcccCCCCC-CCCCCCCeEEEE--eeCCCCeEEEEEEEcC------CCce
Q 006028 124 TVHSFCKILTASDTSTHG----GFSVLRKHATECLPPLD-MTLATPTQELAA--KDLHGYEWRFKHIFRG------QPRR 190 (664)
Q Consensus 124 ~~~~F~K~LT~SDv~~~g----rfsVPk~~Ae~~fP~Ld-~~~~~p~q~L~~--~D~~G~~W~Fr~~yr~------~~rr 190 (664)
..+.|+|.|++.|++..| +|.+|+.....+||.|+ ..+..|.+.+.+ .|...-.+.++.+|.+ +...
T Consensus 17 ~~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnE 96 (404)
T 1na6_A 17 NYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNE 96 (404)
T ss_dssp SEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCE
T ss_pred cchheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCc
Confidence 457899999999998764 79999977899999998 334456555553 3444445599999997 2236
Q ss_pred eeeccccc-ccccccCCCCCCEEEEEeC
Q 006028 191 HLLTTGWS-TFVTSKRLVAGDAFVFLRG 217 (664)
Q Consensus 191 ~lLTtGWs-~FV~~K~L~aGD~VvF~R~ 217 (664)
|.||. |. .+.-.....+||.++|-+.
T Consensus 97 yRLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 97 KRITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred eEEee-cCCCCcccccCCCCCEEEEEEe
Confidence 88872 22 3444577889999988743
No 6
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.60 E-value=0.074 Score=46.46 Aligned_cols=60 Identities=17% Similarity=0.318 Sum_probs=45.9
Q ss_pred CCCeeEEEecCeeeeeeecCCCCCChHHHHHHHHHHHhhhcccCCCCCcEEEEecCCCCeEEecCC
Q 006028 548 TRTRTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDD 613 (664)
Q Consensus 548 ~~~~vKV~meG~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 613 (664)
...-||++-+|.-+-=.|+. --+|++|..+|.++|.+.. ...+++.|.|.|||+.-+-.+
T Consensus 5 ~~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~~----~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFDN----EQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp SCEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCCS----SCCEEEEECCSSSCCEECCSH
T ss_pred CeEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCCC----CCeEEEEEECCCCCcccccCH
Confidence 34578999999744334444 5699999999999999742 455899999999998766554
No 7
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=90.40 E-value=0.82 Score=40.64 Aligned_cols=74 Identities=12% Similarity=0.228 Sum_probs=53.4
Q ss_pred CCeeEEEecCee----e--eeeecCCCCCChHHHHHHHHHHHhhhcccCCCCCcEEEEecCCCCeEEecC-CChHHHHhc
Q 006028 549 RTRTKVQMQGIA----V--GRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGD-DQWPEFCKM 621 (664)
Q Consensus 549 ~~~vKV~meG~~----v--GR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD-~PW~~F~~~ 621 (664)
.--|||+-++.. + -|.|=+..--+|++|+.++.+=|.+.-.-.-....+|-|+|.|||+..+++ +=|++-+.+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 357888877421 2 377777788899999999999999861101023468999999999977665 567777776
Q ss_pred c
Q 006028 622 V 622 (664)
Q Consensus 622 v 622 (664)
+
T Consensus 85 ~ 85 (98)
T 1q1o_A 85 L 85 (98)
T ss_dssp H
T ss_pred H
Confidence 5
No 8
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=89.31 E-value=0.57 Score=41.85 Aligned_cols=64 Identities=17% Similarity=0.282 Sum_probs=45.8
Q ss_pred CCeeEEEecCe----eeeeeecCCC-----------CCChHHHHHHHHHHHhhhcccCCCCCcEEEEecCCCCeEEecCC
Q 006028 549 RTRTKVQMQGI----AVGRAVDLTA-----------LKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDD 613 (664)
Q Consensus 549 ~~~vKV~meG~----~vGR~vDL~~-----------~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 613 (664)
..-||++..|. .-=|.+-|.. ..+|++|...+.++|.- |. ...+.|.|.|.|||+.-+.++
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~---l~-~~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA---LR-PGGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT---SC-SSCEEEEEECTTCCEEEECSH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc---cC-CCcEEEEEECCCCCEEEecCH
Confidence 45689998752 2335544432 25899999999999962 11 345999999999999888876
Q ss_pred ChHHH
Q 006028 614 QWPEF 618 (664)
Q Consensus 614 PW~~F 618 (664)
+++
T Consensus 81 --eEL 83 (102)
T 2kkc_A 81 --EEL 83 (102)
T ss_dssp --HHH
T ss_pred --HHH
Confidence 555
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=85.40 E-value=1.5 Score=40.09 Aligned_cols=63 Identities=14% Similarity=0.320 Sum_probs=46.0
Q ss_pred CCCeeEEEecC-----eeeeeeecCC-----------CCCChHHHHHHHHHHHh-hhcccCCCCCcEEEEecCCCCeEEe
Q 006028 548 TRTRTKVQMQG-----IAVGRAVDLT-----------ALKGYDDLFDELEKMFE-IQGQLRPRDKWAVVFTDDEGDMMLA 610 (664)
Q Consensus 548 ~~~~vKV~meG-----~~vGR~vDL~-----------~~~sY~eL~~~L~~MF~-~~g~l~~~~~~~v~Y~D~eGD~mlv 610 (664)
...-||++..| ..| |.+-|. ...+|++|...+.++|. +. ...|.|.|.|.|||+.-+
T Consensus 19 ~~l~vKayl~~~~~~~~EI-RRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-----~~~f~l~YkDEdGDlItI 92 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREI-RRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-----PGGFQAHYRAERGDLVAF 92 (117)
T ss_dssp -CEEEEEEEECSSSCEEEE-EEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-----SSCEEEEEECTTCCEEEE
T ss_pred ccEEEEEEEecCCCCCCcE-EEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-----CCcEEEEEECCCCCEEEe
Confidence 45678999974 334 444443 24699999999999995 33 235999999999999888
Q ss_pred cCCChHHH
Q 006028 611 GDDQWPEF 618 (664)
Q Consensus 611 GD~PW~~F 618 (664)
..+ +++
T Consensus 93 SsD--eEL 98 (117)
T 2ktr_A 93 SSD--EEL 98 (117)
T ss_dssp CSH--HHH
T ss_pred cCH--HHH
Confidence 776 554
No 10
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.41 E-value=3.4 Score=35.66 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=56.5
Q ss_pred eeEEEecCeeeeeeecCCCCCChHHHHHHHHHHHhhhcccCCCCCcEEEEec-CCCCeEEecCCChHHHHhccc--eEEE
Q 006028 551 RTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTD-DEGDMMLAGDDQWPEFCKMVK--KIFI 627 (664)
Q Consensus 551 ~vKV~meG~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D-~eGD~mlvGD~PW~~F~~~vk--rl~I 627 (664)
=||||-+ .--.|....=-+|.+|...|.+=+.+.++- -+|-|.| .+|.+++.+|.=++.-..-|+ ||++
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~-----~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL 78 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH-----TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTL 78 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG-----CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEE
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcce-----eEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEE
Confidence 4677777 677888888889999999999999876432 2688999 688888999999999888755 6776
Q ss_pred e
Q 006028 628 Y 628 (664)
Q Consensus 628 ~ 628 (664)
+
T Consensus 79 ~ 79 (83)
T 1oey_A 79 W 79 (83)
T ss_dssp E
T ss_pred E
Confidence 5
No 11
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=74.32 E-value=4.3 Score=34.41 Aligned_cols=60 Identities=17% Similarity=0.334 Sum_probs=42.5
Q ss_pred eeecCCCCCChHHHHHHHHHHHhhhcccCCCCCcEEEEecCCCCeEEec-CCChHHHHhcc
Q 006028 563 RAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAG-DDQWPEFCKMV 622 (664)
Q Consensus 563 R~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvG-D~PW~~F~~~v 622 (664)
|.|=...--+|++|+.++.+=|.+.-.........+-|+|.|||+...+ |+=|++-+.++
T Consensus 4 ~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 4 FTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 3344455568999999999999864111113557899999999987665 55677777765
No 12
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=74.17 E-value=8.7 Score=33.49 Aligned_cols=55 Identities=11% Similarity=0.162 Sum_probs=42.2
Q ss_pred eeEEEecCeeeeeeecCCCCCChHHHHHHHHHHHhhhcccCCCCCcEEEEecCCCCeEEecC
Q 006028 551 RTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGD 612 (664)
Q Consensus 551 ~vKV~meG~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD 612 (664)
-.||.-.|+..==-|.-..--++++|...+..+|++. .++|.|.|.|||-.-|--
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~-------~~~ikY~DEenD~v~i~S 62 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------TIQIKYLDEENEEVSINS 62 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS-------SEEEEEECTTSCEEEECS
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC-------ceEEEEEcCCCCEEEEec
Confidence 4688889975332353344678999999999999985 369999999999876643
No 13
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=74.12 E-value=7.9 Score=34.59 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=48.1
Q ss_pred eeEEEecCeeeeeeecCCCCCChHHHHHHHHHHHhhhcccCCCCCcEEEEecCCCCeEEecCCChHHHHhccc
Q 006028 551 RTKVQMQGIAVGRAVDLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDDQWPEFCKMVK 623 (664)
Q Consensus 551 ~vKV~meG~~vGR~vDL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~PW~~F~~~vk 623 (664)
-.||.-.|+..==-|.-..--++++|...+..+|++. .++|.|.|.|||-.-| .-+.+|-+.+|
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~-------~~~IkY~DEenD~V~i--~Sq~E~eEAlk 79 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN-------TIQIKYLDEENEEVSI--NSQGEYEEALK 79 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS-------SBCCEEECTTSCEECC--CSHHHHHHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC-------ceEEEEecCCCCEEEE--ecHHHHHHHHH
Confidence 4799999975433464444678999999999999985 3589999999999887 44566644433
No 14
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=70.42 E-value=4 Score=36.64 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=33.2
Q ss_pred cCCCCCChHHHHHHHHHHHhhhcccCCCCCcEEEEecCCCCeEEecCC
Q 006028 566 DLTALKGYDDLFDELEKMFEIQGQLRPRDKWAVVFTDDEGDMMLAGDD 613 (664)
Q Consensus 566 DL~~~~sY~eL~~~L~~MF~~~g~l~~~~~~~v~Y~D~eGD~mlvGD~ 613 (664)
||+.--.|++|+....+-|.- .+-.+-|+|.|||+.-+=|+
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~-------~DIaLNYrD~eGDLIrildd 68 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQR-------EDIALNYRDAEGDLVRLLSD 68 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCC-------SSEEEEEECTTSCEEECCSH
T ss_pred ccccCCCHHHHHHHHHHHhcc-------cceeeeeecCCCCEEEEcch
Confidence 788899999999999999983 34588899999998544443
No 15
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=57.42 E-value=26 Score=32.83 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=63.0
Q ss_pred CCCCCEEEE-EeC-CCCcEEEEEEEccccCCCCCCcccccCccchhHHHHHHHHHhcCCeEEEEEecCC------C--cc
Q 006028 206 LVAGDAFVF-LRG-ENGELRVGVRRLAHQQSSMPSSVISSQSMHLGVLATAAHAVKTSTLFIVYYKPRT------S--QF 275 (664)
Q Consensus 206 L~aGD~VvF-~R~-~~G~l~vGiRRa~~~~~~~p~sv~~~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~------s--eF 275 (664)
.+.||.|.+ |+. .+|+.+-.-+ . .. .++...+-.| +.+|..-...|..++|.--|.. . -+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~-~-~f-------~~G~g~vipG-~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE-L-SY-------LHGHRNLIPG-LEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE-E-EE-------ETTSSSSCHH-HHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE-E-EE-------EECCCCcChH-HHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 567888876 332 6777665443 1 11 1112222223 4667777788999998886643 1 67
Q ss_pred eeeHHHHHHHhhcCcccCcEEEEEEecCCCCCceeeeEEEeeec
Q 006028 276 IIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (664)
Q Consensus 276 vV~~~~y~~A~~~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~ 319 (664)
.|+++.+... ..|.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~--~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED--AEVVPGAQFYAQ--DMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT--SCCCTTCEEEEE--ETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC--CCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 8888887532 589999999854 4442 567899999975
No 16
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=38.89 E-value=34 Score=28.34 Aligned_cols=55 Identities=9% Similarity=0.221 Sum_probs=39.7
Q ss_pred hhcCcccCcEEEEEEecCCCCCceeeeEEEeeecCCCCCCCCCccceeeccCCCCCCCCCCCcccCcccccC
Q 006028 286 VHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPATVQRPERVSPWEIEPFV 357 (664)
Q Consensus 286 ~~~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 357 (664)
|-..|.+|+++-.++ +|- ++|-++|.+|... ....|..++.. .+.|..=+|.|+.
T Consensus 3 ~~~~~~vGd~vmArW-~D~---~yYpA~I~si~~~---------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SDC---RFYPAKVTAVNKD---------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp --CCCCTTCEEEEEC-TTS---CEEEEEEEEECTT---------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cCcccccCCEEEEEc-CCC---CEeeEEEEEECCC---------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 456899999999999 443 8999999999742 46889999833 4555555555543
No 17
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=38.32 E-value=33 Score=33.45 Aligned_cols=100 Identities=21% Similarity=0.200 Sum_probs=62.3
Q ss_pred CCCCCEEEE-Ee--CCCCcEEEEEEEccccCCCCCCcc-cccCccchhHHHHHHHHHhcCCeEEEEEecCC------C--
Q 006028 206 LVAGDAFVF-LR--GENGELRVGVRRLAHQQSSMPSSV-ISSQSMHLGVLATAAHAVKTSTLFIVYYKPRT------S-- 273 (664)
Q Consensus 206 L~aGD~VvF-~R--~~~G~l~vGiRRa~~~~~~~p~sv-~~~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~------s-- 273 (664)
.+.||.|.+ |+ ..+|+.+-.-+. ..|... +....+-.| +.+|..-...|..++|..-|-. .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~------~~P~~f~lG~g~vipG-~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPV------SAPLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCT------TSCCEEESSSSSSCHH-HHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCC------CCCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 568999877 44 357876543321 123332 222333333 4667777788999998876643 2
Q ss_pred cceeeHHHHHHHhhcCcccCcEEEEEEecCCCCCceeeeEEEeeec
Q 006028 274 QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (664)
Q Consensus 274 eFvV~~~~y~~A~~~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~ 319 (664)
-+.|+++.+.. ...+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~--~~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCC--SSCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCC--ccCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 57788877742 247999999964 44542 57888888864
No 18
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=36.54 E-value=1.1e+02 Score=28.24 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=65.2
Q ss_pred ccCCCCCCEEEE-EeC--C-CCcEEEEEEEccccCCCCCCcc-cccCccchhHHHHHHHHHhcCCeEEEEEecCC-----
Q 006028 203 SKRLVAGDAFVF-LRG--E-NGELRVGVRRLAHQQSSMPSSV-ISSQSMHLGVLATAAHAVKTSTLFIVYYKPRT----- 272 (664)
Q Consensus 203 ~K~L~aGD~VvF-~R~--~-~G~l~vGiRRa~~~~~~~p~sv-~~~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~----- 272 (664)
.+..+.||.|.+ |.. . +|+.+-.-+. ..|... ++...+-.| +.+|..-...|..++|.--|..
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~------~~p~~f~~G~g~vipg-~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNIS------KEPLEFIIGTNQIIAG-LEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTT------TCCEEEETTCCCSCHH-HHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCC------CcCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 355778999977 442 4 7876644321 123222 222233333 4667777788998988876532
Q ss_pred -C--cceeeHHHHHHHhhcCcccCcEEEEEEecCCCCCceeeeEEEeeec
Q 006028 273 -S--QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (664)
Q Consensus 273 -s--eFvV~~~~y~~A~~~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~ 319 (664)
. -+.|+++.+ . ...+.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~--~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E--GIELEKGMSVFGQ--TEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T--TSCCCTTCEEEEE--ETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C--CCCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 2 678888888 1 3589999999854 4443 457899999975
No 19
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=35.55 E-value=11 Score=29.34 Aligned_cols=15 Identities=27% Similarity=0.322 Sum_probs=12.1
Q ss_pred cEEEEecCCCCeEEe
Q 006028 596 WAVVFTDDEGDMMLA 610 (664)
Q Consensus 596 ~~v~Y~D~eGD~mlv 610 (664)
-.|+|+|.+|+|=.-
T Consensus 19 c~V~YtD~dG~WGVe 33 (46)
T 1e8p_A 19 TKVEYTDASGQWGVQ 33 (46)
T ss_dssp SCEEEEETTEEEEEE
T ss_pred ceEEEEcCCCccccC
Confidence 369999999999543
No 20
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=35.12 E-value=1.1e+02 Score=29.11 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=62.6
Q ss_pred CCCCCEEEE-Ee--CCCCcEEEEEEEccccCCCCCCcc-cccCccchhHHHHHHHHHhcCCeEEEEEecCC------C--
Q 006028 206 LVAGDAFVF-LR--GENGELRVGVRRLAHQQSSMPSSV-ISSQSMHLGVLATAAHAVKTSTLFIVYYKPRT------S-- 273 (664)
Q Consensus 206 L~aGD~VvF-~R--~~~G~l~vGiRRa~~~~~~~p~sv-~~~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~------s-- 273 (664)
.+.||.|.+ |. ..+|+.+-.-+.. .|... ++...+-.| +.+|..-...|..++|..-|-. .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~vipG-~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSLISG-LETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSSCSH-HHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCcchH-HHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568899877 44 3578766543211 23222 222223333 4667777788998888876643 1
Q ss_pred cceeeHHHHHHHhhcCcccCcEEEEEEecCCCCCceeeeEEEeeec
Q 006028 274 QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (664)
Q Consensus 274 eFvV~~~~y~~A~~~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~ 319 (664)
-+.|+++.+.. ...+.+||+|.+ ++++- + ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~--~~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMG--VDELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTT--SSCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCc--ccCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 56788888753 347999999985 44543 2 6889999864
No 21
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=31.66 E-value=29 Score=28.91 Aligned_cols=34 Identities=12% Similarity=0.347 Sum_probs=29.9
Q ss_pred ccccccCCCCCCEEEEEeC-CCCcEEEEEEEcccc
Q 006028 199 TFVTSKRLVAGDAFVFLRG-ENGELRVGVRRLAHQ 232 (664)
Q Consensus 199 ~FV~~K~L~aGD~VvF~R~-~~G~l~vGiRRa~~~ 232 (664)
+++++-+++.||.+...-+ .+|++.++.+|-++.
T Consensus 32 eI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~ 66 (68)
T 3o27_A 32 DIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKEL 66 (68)
T ss_dssp HHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhc
Confidence 8899999999999999775 589999999997654
No 22
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=30.24 E-value=52 Score=28.52 Aligned_cols=55 Identities=9% Similarity=0.209 Sum_probs=40.1
Q ss_pred hcCcccCcEEEEEEecCCCCCceeeeEEEeeecCCCCCCCCCccceeeccCCCCCCCCCCCcccCcccccCC
Q 006028 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPATVQRPERVSPWEIEPFVA 358 (664)
Q Consensus 287 ~~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~~ 358 (664)
...|.+|+++-.++ +|- ++|-++|++|... ....|.+++.. .+.|.+=+|.|+..
T Consensus 19 ~~~f~vGd~VlArW-~D~---~yYPAkI~sV~~~---------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDC---RFYPAKVTAVNKD---------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp --CCCTTCEEEEEC-TTS---CEEEEEEEEECTT---------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred CcccccCCEEEEEe-CCC---CEeeEEEEEECCC---------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 46899999999999 443 8999999999742 46899999933 45566666666544
No 23
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=29.61 E-value=50 Score=25.81 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=24.1
Q ss_pred cCcccCcEEEEEEecCCCCCceeeeEEEeeec
Q 006028 288 HCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (664)
Q Consensus 288 ~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~ 319 (664)
+.|.+|+....+|..|. .||-++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 47999999999995343 899999999963
No 24
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.97 E-value=38 Score=32.34 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=21.8
Q ss_pred ccCCCCCCEEEEEeCCCCcEEEEEE
Q 006028 203 SKRLVAGDAFVFLRGENGELRVGVR 227 (664)
Q Consensus 203 ~K~L~aGD~VvF~R~~~G~l~vGiR 227 (664)
-..|.+||.|-|++..+|+|++.|-
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iN 139 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVN 139 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEES
T ss_pred ccccCCCCEEEEEEcCCcEEEEEEC
Confidence 3467899999999999999999874
No 25
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=26.47 E-value=59 Score=29.19 Aligned_cols=70 Identities=19% Similarity=0.214 Sum_probs=45.2
Q ss_pred eHHHHHHHhhcCcccCcEEEEEEecCCCCCceeeeEEEeeecCCCCCCCCCccceeeccCCCCCCCCCCCcccCcccccC
Q 006028 278 GLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPATVQRPERVSPWEIEPFV 357 (664)
Q Consensus 278 ~~~~y~~A~~~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~~dp~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIEp~~ 357 (664)
+.+.|-.-+..+..+|||+||.=.-|+.+. -=.|++. ++. + .-| ..||.|..... .-.|+-=.||.+.
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~-Gl~-----~vQv~W~~~G~---TyWV~~~~~Ellg 77 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-N-GVP-----PVQVFWESTGR---TYWVHWHMLEILG 77 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-T-TSS-----EEEEEETTTTE---EEEEEGGGEEECC
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhcc-CCceeEE-ecC-C-CCc-----cceeeehhcCc---eEEEEeehhhhcC
Confidence 456788888999999999999844444332 2367777 331 2 222 88999987652 4445555667654
Q ss_pred CC
Q 006028 358 AS 359 (664)
Q Consensus 358 ~~ 359 (664)
.+
T Consensus 78 ~~ 79 (105)
T 2jng_A 78 FE 79 (105)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 26
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=25.62 E-value=64 Score=25.71 Aligned_cols=43 Identities=12% Similarity=0.248 Sum_probs=31.4
Q ss_pred hcCcccCcEEEEEEecCCCCCceeeeEEEeeecCCCCCCCCCccceeeccCCCC
Q 006028 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEPA 340 (664)
Q Consensus 287 ~~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~~dp~wp~S~WR~L~V~WDe~~ 340 (664)
...|.+|+...-+|..|. .||.++|.++...+ ....|...+-.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~~~--------~~~~V~fvdYG 48 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG---QCYEAEIEEIDEEN--------GTAAITFAGYG 48 (64)
T ss_dssp SSCCCTTCEEEEECTTTS---SEEEEEEEEEETTT--------TEEEEEETTTT
T ss_pred CCCCCCCCEEEEEECCCC---CEEEEEEEEEcCCC--------CEEEEEEEecC
Confidence 468999999999995443 89999999997411 24566666543
No 27
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=25.39 E-value=61 Score=24.76 Aligned_cols=28 Identities=4% Similarity=0.125 Sum_probs=22.4
Q ss_pred CcccCcEEEEEEecCCCCCceeeeEEEeeec
Q 006028 289 CFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (664)
Q Consensus 289 ~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~ 319 (664)
.|.+|+..-..|..|. .||-++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 4899999999995444 899999999953
No 28
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.93 E-value=65 Score=26.91 Aligned_cols=40 Identities=15% Similarity=0.312 Sum_probs=31.8
Q ss_pred hcCcccCcEEEEEEecCCCCCceeeeEEEeeecCCCCCCCCCccceeeccCCC
Q 006028 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSEQWPGSKWRSLKIQWDEP 339 (664)
Q Consensus 287 ~~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~~dp~wp~S~WR~L~V~WDe~ 339 (664)
...|.+|+++.-+|. |. .||-++|.+|.. + ....|..++-
T Consensus 7 ~~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~------~---~~~~V~f~Dy 46 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DC---RYYPAKIEAINK------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCCTTCEEEEECS-SS---SEEEEEEEEEST------T---SSEEEEETTS
T ss_pred CCCCCCCCEEEEECC-CC---CEEEEEEEEECC------C---CEEEEEEecC
Confidence 458999999999996 43 899999999963 1 3567888765
No 29
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=22.69 E-value=1.9e+02 Score=27.41 Aligned_cols=103 Identities=13% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCCCCCEEEE-EeC--CCCcEEEEEEEccccCCCCCCcc-cccCccchhHHHHHHHHHhcCCeEEEEEecCC------C-
Q 006028 205 RLVAGDAFVF-LRG--ENGELRVGVRRLAHQQSSMPSSV-ISSQSMHLGVLATAAHAVKTSTLFIVYYKPRT------S- 273 (664)
Q Consensus 205 ~L~aGD~VvF-~R~--~~G~l~vGiRRa~~~~~~~p~sv-~~~~sm~~gvla~A~~a~~tg~~F~V~Y~PR~------s- 273 (664)
..+.||.|.+ |+. .+|+.+-.-+.. +.|... ++...+-.| +.+|..-...|..++|..-|.. .
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~-----~~P~~f~lG~g~vipG-~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~ 97 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNN-----GKPALFRLGDASLSEG-LEQHLLGLKVGDKTTFSLEPDAAFGVPSPD 97 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHH-----TSCEEEETTSSSSCHH-HHHHHTTCCTTCEEEEEECGGGTTCCCCGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCC-----CCCEEEEECCCCccHH-HHHHHcCCCCCCEEEEEEChHHhcCCCChH
Confidence 5778999987 443 688866442211 123222 222223233 5667777788999999877643 2
Q ss_pred -cceeeHHHHHHHhhcCcccCcEEEEEEecCCCCCceeeeEEEeeec
Q 006028 274 -QFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (664)
Q Consensus 274 -eFvV~~~~y~~A~~~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~ 319 (664)
=+.|+++.+.. ...+.+||+|.+ ++++- ..+.|+|+.|.+
T Consensus 98 lv~~vp~~~f~~--~~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 98 LIQYFSRREFMD--AGEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp GEEEEEGGGGTT--TCCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred HEEEeCHHHCCC--cCCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 46688887753 346899999875 44442 467899999985
No 30
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=21.43 E-value=74 Score=30.27 Aligned_cols=21 Identities=10% Similarity=0.320 Sum_probs=19.2
Q ss_pred CCCCEEEEEeCCCCcEEEEEE
Q 006028 207 VAGDAFVFLRGENGELRVGVR 227 (664)
Q Consensus 207 ~aGD~VvF~R~~~G~l~vGiR 227 (664)
..||.+.|++..+|++++.|-
T Consensus 107 ~~g~~l~f~v~~~G~l~~~iN 127 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGIN 127 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEES
T ss_pred cCCCEEEEEEcCCCEEEEEEC
Confidence 679999999999999999884
No 31
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.41 E-value=88 Score=26.87 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=24.7
Q ss_pred hcCcccCcEEEEEEecCCCCCceeeeEEEeeec
Q 006028 287 HHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGD 319 (664)
Q Consensus 287 ~~~w~~GmRFkM~fE~EDs~~~~~~GTI~gv~~ 319 (664)
...|.+|+.....|..|. .||-++|.+|..
T Consensus 8 ~~~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~ 37 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG---CIYPATIASIDF 37 (88)
T ss_dssp -CCCCSSCEEEEECTTTC---CEEEEEEEEEET
T ss_pred cCCCCCCCEEEEEECCCC---CEEEEEEEEecC
Confidence 468999999999995443 899999999964
Done!