Query 006029
Match_columns 664
No_of_seqs 152 out of 986
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 14:05:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 2E-106 8E-111 913.7 50.1 573 16-656 4-589 (594)
2 3puk_A Syntaxin-binding protei 100.0 4E-105 1E-109 903.6 42.9 564 15-655 7-583 (592)
3 3c98_A Syntaxin-binding protei 100.0 6E-104 2E-108 903.1 51.0 574 15-656 15-601 (606)
4 2xhe_A UNC18; exocytosis, exoc 100.0 3E-103 1E-107 901.2 55.8 600 17-656 3-619 (650)
5 1epu_A S-SEC1; parallel beta-s 100.0 2E-103 7E-108 897.1 50.9 575 17-654 2-590 (591)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 2.8E-92 9.7E-97 812.4 41.8 580 15-658 16-667 (671)
7 1y9j_A SEC1 family domain cont 100.0 1.1E-28 3.6E-33 229.0 11.1 133 16-151 20-159 (159)
8 3he4_B Synzip5; heterodimeric 42.3 55 0.0019 21.7 4.8 32 356-387 3-34 (46)
9 1tqx_A D-ribulose-5-phosphate 26.8 39 0.0013 32.5 3.3 43 604-650 173-215 (227)
10 2f40_A Hypothetical protein PF 23.0 59 0.002 26.0 3.0 56 607-662 12-81 (96)
11 1h1y_A D-ribulose-5-phosphate 21.9 37 0.0013 32.5 2.1 43 604-650 173-215 (228)
12 1y0e_A Putative N-acetylmannos 21.1 73 0.0025 29.9 4.1 45 604-652 175-220 (223)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=2.4e-106 Score=913.74 Aligned_cols=573 Identities=30% Similarity=0.565 Sum_probs=474.5
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCchhhhhcCceEEeeccCCCCCCCCCeEEEEecCC
Q 006029 16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT 95 (664)
Q Consensus 16 ~~l~~~~~~~l~~~~l~~v~~~~~~~~~KvLilD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~R~~~~~~~aIy~i~Pt 95 (664)
-+|++++|++|++.||+++++ .++|||||+|+.+++|||++|++++|+++||++|+.|+.+|+|+|+++|||||+||
T Consensus 4 ~~lk~~~~~~l~~~~l~~~~~---~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt 80 (594)
T 1dn1_A 4 IGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPS 80 (594)
T ss_dssp CCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCC
T ss_pred hhHHHHHHHHHHHHHHhhccc---CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCC
Confidence 479999999999889999853 34799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhcCCccccccceeEEecceEeccCCceeeCCcchhhhhcCC
Q 006029 96 KENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGD 174 (664)
Q Consensus 96 ~~~i~~i~~d~~~-~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~df~pld~~lfsl~~~~~~~~l~~~ 174 (664)
.+||++|++||+. ..++|++|||+|++.+|+.+++.||+ .++.+.|+++.|+++||+|+|+++|||++|++|..+|.+
T Consensus 81 ~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~ 159 (594)
T 1dn1_A 81 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP 159 (594)
T ss_dssp HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred HHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCC
Confidence 9999999999973 13689999999999999999999996 578899999999999999999999999999999999995
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCCC---CCC
Q 006029 175 EENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFP---QTE 251 (664)
Q Consensus 175 ~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~ia~~la~~l~~~l~~~~~~~~~~~---~~~ 251 (664)
..+ ......++.+|++|+++|.++|.+|.|||+|++ ..|+++|+.+++.|+++..+++.++ ...
T Consensus 160 ~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~ 226 (594)
T 1dn1_A 160 HKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKA 226 (594)
T ss_dssp GGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGG
T ss_pred ccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccCccccCCCCCC
Confidence 321 234678999999999999999999999999874 2477899999988888765544432 234
Q ss_pred CeeEEEEcCCCCcccchhhhhhhhHHhhhhcccCCCeEEEeecCCCCCCCcceEEecCCCchHHHHhhhccHHHHHHHHH
Q 006029 252 TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLH 331 (664)
Q Consensus 252 ~~~LiIlDR~~D~~TPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~ 331 (664)
+++|||+||++|++|||+||||||||+||+|||++|+|+++.+. .+..+++++.|+++|+||.++||+||++|++.|.
T Consensus 227 ~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~ 304 (594)
T 1dn1_A 227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVT 304 (594)
T ss_dssp GCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred CCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence 78999999999999999999999999999999999999998632 1234568899999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcCC
Q 006029 332 EKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGD 411 (664)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~ 411 (664)
+++++|+++++.. ..+..+++||++||++||+++++++.+++|++||++|++.+++ .|++++++||+|++|.
T Consensus 305 ~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~ 376 (594)
T 1dn1_A 305 RSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGT 376 (594)
T ss_dssp HHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 9999998865421 1245678899999999999999999999999999999999987 8999999999999986
Q ss_pred CC--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccCC
Q 006029 412 AG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKK 483 (664)
Q Consensus 412 ~~--------~~~l~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~ 483 (664)
+. .+.+.++|. +..++.+|||||+|||++++ +|+.++++.++++++|++.+++.++.||+++|+...+..
T Consensus 377 d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~ 454 (594)
T 1dn1_A 377 DAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDS 454 (594)
T ss_dssp CSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCC
T ss_pred CcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc
Confidence 42 134566776 46789999999999999998 589989999999999999999999999999998654221
Q ss_pred CCCCCCCchhhhhhhhcccccCCCCCccccccccccHHHHHHHHHHhcCCCCCCCCCccCCCCCCccccccccccCCCcc
Q 006029 484 SSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPV 563 (664)
Q Consensus 484 ~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 563 (664)
. . .|.+++.++.+ +.++.|.+|||+|++++++|++++|+|+++.|||+.++++...+
T Consensus 455 ~-------~---~k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~------------ 511 (594)
T 1dn1_A 455 T-------L---RRRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS------------ 511 (594)
T ss_dssp G-------G---GCCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC------------------
T ss_pred c-------c---ccccccccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc------------
Confidence 1 0 11122233333 57899999999999999999999999999999999765421100
Q ss_pred cccccCCCCCcccCCCCCCCCCCccchhcccccccccCCcEEEEEEEcCcCHHHHHHHHHHHhhC-CCeEEEccCcccCh
Q 006029 564 AHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKL-NREIILGSTSLDDP 642 (664)
Q Consensus 564 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVf~iGGvTysEi~al~~L~~~~-~~~iiigsT~Ii~~ 642 (664)
.+..+.|+++|++.+++.+ .+.++++||||+||+||+|+|++|++++.. |++|+||||+|+||
T Consensus 512 -~~~~s~r~~~w~~~~~~~~---------------~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~VilG~t~il~p 575 (594)
T 1dn1_A 512 -TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTP 575 (594)
T ss_dssp ------------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECH
T ss_pred -ccccccccccccccCCccc---------------cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceEEEeeCCcCCH
Confidence 1222445578986543211 135789999999999999999999999986 48999999999999
Q ss_pred hHHHHHHhccCCCC
Q 006029 643 PQFITKMKMLTVDE 656 (664)
Q Consensus 643 ~~fl~~l~~l~~~~ 656 (664)
++||++|..|+++.
T Consensus 576 ~~Fl~~l~~l~~~~ 589 (594)
T 1dn1_A 576 QKLLDTLKKLNKTD 589 (594)
T ss_dssp HHHHHHHTTTTSCS
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999998764
No 2
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=3.7e-105 Score=903.61 Aligned_cols=564 Identities=28% Similarity=0.482 Sum_probs=467.0
Q ss_pred chhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCchhhhhcCceEEeeccCCCCCCCCCeEEEEecC
Q 006029 15 YKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQP 94 (664)
Q Consensus 15 ~~~l~~~~~~~l~~~~l~~v~~~~~~~~~KvLilD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~R~~~~~~~aIy~i~P 94 (664)
+-+|++++|++|+++||++++. +++|||||+|+.+++|||++|++++|+++||++|+.|+.+|+|+|+++|||||+|
T Consensus 7 ~~~lk~~~~~~l~~~~l~~v~~---~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~~~aIYfv~P 83 (592)
T 3puk_A 7 ERGLKSVVWRKIKTAVFDDCRK---EGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISP 83 (592)
T ss_dssp CCCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTTSCEEEEECS
T ss_pred ChhHHHHHHHHHHHHHHHhhcc---cCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCCCcEEEEEeC
Confidence 4579999999999889999963 3479999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCccccccceeEEecceEeccCCceeeCCcchhhhhcC
Q 006029 95 TKENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG 173 (664)
Q Consensus 95 t~~~i~~i~~d~~~~-~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~df~pld~~lfsl~~~~~~~~l~~ 173 (664)
|.+||++|++||+.. .++|++|||+|++.+|+.+++.| + .++.+.|+++.|+++||+|+|+++|||++|++|..+|.
T Consensus 84 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~lle~L-~-~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~ 161 (592)
T 3puk_A 84 TPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKI-K-ASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYS 161 (592)
T ss_dssp CHHHHHHHHHHHTGGGCCCBSCEEEEESSCCCHHHHHHH-H-HSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSC
T ss_pred CHHHHHHHHHHHhccccccCCeEEEEECCCCCHHHHHHH-H-hhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcC
Confidence 999999999999741 35899999999999999999999 4 57889999999999999999999999999999999999
Q ss_pred CCCC-ccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHH-hhhhcCCCCC-C
Q 006029 174 DEEN-SRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMK-YKQSIENFPQ-T 250 (664)
Q Consensus 174 ~~~~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~ia~~la~~l~~~l~~-~~~~~~~~~~-~ 250 (664)
++.+ .......++.+|++|+++|.++|.+|.|||+|++.. -|+++|+.+++.|.+ +....+.++. .
T Consensus 162 ~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~-----------~a~~lA~~l~~~l~~~~~~~~~~~~~~~ 230 (592)
T 3puk_A 162 PDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLD-----------NASKLAQLVEKKLEDYYKIDEKGLIKGK 230 (592)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSS-----------HHHHHHHHHHHHHHHSSSSCSSCSCCSC
T ss_pred CcccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchH-----------HHHHHHHHHHHHHHHHHhccCCCcCCCC
Confidence 6432 133467899999999999999999999999987421 256888888888877 4433333322 4
Q ss_pred CCeeEEEEcCCCCcccchhhhhhhhHHhhhhcccCCCeEEEeecCCCCCCCcceEEecCCCchHHHHhhhccHHHHHHHH
Q 006029 251 ETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERL 330 (664)
Q Consensus 251 ~~~~LiIlDR~~D~~TPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l 330 (664)
++++|||+||++|++|||+||||||||+||+|||++|+|+++. .| +++++.|+++|+||.++||+||++|++.|
T Consensus 231 ~~~~LiIlDR~~D~vtPLlh~~TYqalv~dll~i~~~~v~~~~---~g---~~k~~~L~~~D~~~~~~r~~~f~~v~~~l 304 (592)
T 3puk_A 231 TQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKT---DG---KEKEAVLEEDDDLWVRVRHRHIAVVLEEI 304 (592)
T ss_dssp CSEEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCGGGEEECCS---SS---SCCEEECSTTSSSTTTTTTSBHHHHHTTS
T ss_pred CCceEEEecCCccccccccccccHHHHHHHHhcccCCEEEecC---CC---ceeEEecCCCCHHHHHHhccCHHHHHHHH
Confidence 5899999999999999999999999999999999999999874 12 46789999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Q 006029 331 HEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFG 410 (664)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g 410 (664)
.+++++|+++++. ..+..+++||++||++||+++++++.+++|++||++|++.+++ +|++++++||++++|
T Consensus 305 ~~~~~~~~~~~~~--------~~~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g 375 (592)
T 3puk_A 305 PKLMKEISSTKKA--------TEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALG 375 (592)
T ss_dssp CSCSTTTTTCC---------------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhc--------ccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 9999999865532 1245688999999999999999999999999999999999987 899999999999998
Q ss_pred CCCh--------HHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccC
Q 006029 411 DAGL--------KDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIK 482 (664)
Q Consensus 411 ~~~~--------~~l~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~ 482 (664)
.+.. +.++++|. +..++.+|||||+|||++++ +|++++++.++++++|++. +..++.||+++|+...+.
T Consensus 376 ~d~~~~~~k~~~~~i~~~L~-~~~~~~~dkLRL~lLy~L~~-~g~~~~~~~~Ll~~~g~~~-~~~~i~nl~~lg~~~~~~ 452 (592)
T 3puk_A 376 TDAEGQRVKDSMLVLLPVLL-NKNHDNCDKIRAVLLYIFGI-NGTTEENLDRLIHNVKIED-DSDMIRNWSHLGVPIVPP 452 (592)
T ss_dssp SCTTCCSCSCCHHHHTTTTT-SCSCCHHHHHHHHHHHHHHS-CBCCHHHHHHHHHHTCCCT-TTHHHHGGGGGTCCSSSS
T ss_pred CCccchhhHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCh-HHHHHHHHHHhCCccccC
Confidence 6521 23455565 46789999999999999998 5999999999999999976 899999999999865422
Q ss_pred CCCCCCCCchhhhhhhhcccccCCCCCccccccccccHHHHHHHHHHhcCCCCCCCCCccCCCCCCccccccccccCCCc
Q 006029 483 KSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPP 562 (664)
Q Consensus 483 ~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 562 (664)
. + ..+..++.+ +.++.|.+|||+|++++++|++++|+|+++.|||+.+++....+
T Consensus 453 ~-----~--------~~~~~rk~~-~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~~----------- 507 (592)
T 3puk_A 453 S-----Q--------QAKPLRKDR-SAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNG----------- 507 (592)
T ss_dssp B-----S--------SCCCCCCCC-CCCCGGGSCCCCCTTHHHHHHHHTCCCCTTTSCC---------------------
T ss_pred c-----c--------ccCcccccC-CCCcceeeeccchHHHHHHHHHHhCCCCcccCCccCCCCCCccC-----------
Confidence 1 0 111222332 57899999999999999999999999999999999865421100
Q ss_pred ccccccCCCCCcccCCCCCCCCCCccchhcccccccccCCcEEEEEEEcCcCHHHHHHHHHHHhhCC-CeEEEccCcccC
Q 006029 563 VAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLN-REIILGSTSLDD 641 (664)
Q Consensus 563 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVf~iGGvTysEi~al~~L~~~~~-~~iiigsT~Ii~ 641 (664)
.+..+.|+++| +.+... ....+++|||||+|||||+|+|++|++++..+ ++|+||||+|+|
T Consensus 508 --~~~~s~r~~~w-~~~~~~---------------~~~~~~riiVFivGGvTysE~r~~~els~~~~~~~vilG~T~i~n 569 (592)
T 3puk_A 508 --SGAVSARQKPR-TNYLEL---------------DRKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILT 569 (592)
T ss_dssp ------------C-CCCCCC---------------CCSCCSEEEEEEETCEEHHHHHHHHHHHHHCCSSEEEEEESSEEC
T ss_pred --Ccccccccccc-ccCccc---------------cccCCCeEEEEEeCCcCHHHHHHHHHHHhhcCCceEEEeeCCcCC
Confidence 01113455688 433211 01357899999999999999999999999875 899999999999
Q ss_pred hhHHHHHHhccCCC
Q 006029 642 PPQFITKMKMLTVD 655 (664)
Q Consensus 642 ~~~fl~~l~~l~~~ 655 (664)
|++||++|..|+++
T Consensus 570 p~~fl~~l~~l~~~ 583 (592)
T 3puk_A 570 PRKLLDDIKMLNKS 583 (592)
T ss_dssp HHHHHHHHSSTTSC
T ss_pred HHHHHHHHHHhCCc
Confidence 99999999999866
No 3
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=6.2e-104 Score=903.07 Aligned_cols=574 Identities=30% Similarity=0.564 Sum_probs=472.5
Q ss_pred chhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCchhhhhcCceEEeeccCCCCCCCCCeEEEEecC
Q 006029 15 YKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQP 94 (664)
Q Consensus 15 ~~~l~~~~~~~l~~~~l~~v~~~~~~~~~KvLilD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~R~~~~~~~aIy~i~P 94 (664)
|.+||+++|++++++|++++++ +++|||||+|+.+++|||++|+++||+++||++|+.|+++|+|+|+++|||||+|
T Consensus 15 p~~l~~~~~~~~l~~~i~~v~~---~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~~~aIyfv~P 91 (606)
T 3c98_A 15 PIGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITP 91 (606)
T ss_dssp -CCHHHHHHHHHHHHTHHHHCB---TTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTTSCEEEEECC
T ss_pred cHHHHHHHHHHHHHHHHhccCC---CCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcC
Confidence 5679999999999999999974 2469999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCccccccceeEEecceEeccCCceeeCCcchhhhhcC
Q 006029 95 TKENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG 173 (664)
Q Consensus 95 t~~~i~~i~~d~~~~-~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~df~pld~~lfsl~~~~~~~~l~~ 173 (664)
|.+||++|++||++. .++|++|||||++.+|+.+++.||+ .+..+.|.+|.|+++||+|+|+++|||++|++|..+|.
T Consensus 92 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~~le~la~-~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~~ 170 (606)
T 3c98_A 92 SEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYS 170 (606)
T ss_dssp CHHHHHHHHHTTTSGGGCCBSCEEEEESSCCCHHHHHHHHT-SGGGGTEEEEEECCCCSEECSSSEEECCCTTHHHHHHC
T ss_pred CHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHh-cCcccccCeEEEEecchhhcCCcEEEecCCchHHHhcC
Confidence 999999999999741 3589999999999999999999996 46788999999999999999999999999999999998
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCC---CCC
Q 006029 174 DEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENF---PQT 250 (664)
Q Consensus 174 ~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~ia~~la~~l~~~l~~~~~~~~~~---~~~ 250 (664)
+.. .......++.+|++|+++|.++|.+|.|||+|++ ..|+.+|+.+++.++.+.++.+.+ +..
T Consensus 171 ~~~-~~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~------------~~~~~la~~~~~~l~~~~~~~~~~~~~~~~ 237 (606)
T 3c98_A 171 PHK-AQMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDK 237 (606)
T ss_dssp GGG-TTSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------HHHHHHHHHHHHHHHHHHHHCTTTTCSTTT
T ss_pred Ccc-cccchHHHHHHHHHHHHHHHHcCCCCeEEEecCc------------hHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Confidence 543 2233678999999999999999999999999874 246778899999888887665443 234
Q ss_pred CCeeEEEEcCCCCcccchhhhhhhhHHhhhhcccCCCeEEEeecCCCCCCCcceEEecCCCchHHHHhhhccHHHHHHHH
Q 006029 251 ETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERL 330 (664)
Q Consensus 251 ~~~~LiIlDR~~D~~TPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l 330 (664)
++++|||+||++|++|||+||||||||+||+|||++|+|+++.+.. +..+++++.++++|+||.++||+||++|++.|
T Consensus 238 ~~~~LlIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~--~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~l 315 (606)
T 3c98_A 238 ARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSGI--GEARVKEVLLDEDDDLWIALRHKHIAEVSQEV 315 (606)
T ss_dssp TSCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEESS--SSEEEEEEECSTTCHHHHHHTTSBHHHHHHHH
T ss_pred CCceEEEeeccccccchhcccccHHHHHHHHhCccCCeEEEecCCC--CCccceEeecCCCchhHHHHhccCHHHHHHHH
Confidence 5799999999999999999999999999999999999999986422 23456889999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Q 006029 331 HEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFG 410 (664)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g 410 (664)
.+++++|+++++. ..++..+++||++||++||+++++++.+++|++|+++|++.++ ++|++++++||+|++|
T Consensus 316 ~~~~~~~~~~~~~-------~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~~ 387 (606)
T 3c98_A 316 TRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMG 387 (606)
T ss_dssp HHHHHHHHHHTTC--------------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh-------hcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 9999999876542 1223458889999999999999999999999999999999995 6899999999999987
Q ss_pred CCC--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccC
Q 006029 411 DAG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIK 482 (664)
Q Consensus 411 ~~~--------~~~l~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~ 482 (664)
.+. .+.++++|. +..++..|||||+|||++++ +|++++++.++++..|++.++..++.||+++|+...+.
T Consensus 388 ~d~~~~~~~~~~~~i~~ll~-~~~~~~~dkLRL~lLy~l~~-~g~~~~~l~~~~~~~~~~~~~~~~i~~l~~lg~~~~~~ 465 (606)
T 3c98_A 388 TDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTD 465 (606)
T ss_dssp BCTTSCBCSCTHHHHHHHHT-CTTSCHHHHHHHHHHHHHHT-TSBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCC
T ss_pred CCcchhhHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccc
Confidence 542 246777776 46789999999999999998 58998889999999999999999999999999876532
Q ss_pred CCCCCCCCchhhhhhhhcccccCCCCCccccccccccHHHHHHHHHHhcCCCCCCCCCccCCCCCCccccccccccCCCc
Q 006029 483 KSSTGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPP 562 (664)
Q Consensus 483 ~~~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 562 (664)
.. ... ......+. .+.+..|+||||+|++++++|.+++++++++.||++..+.....+
T Consensus 466 ~~----~~~------~~~~~~~~-~~~~~~~~~s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~~~----------- 523 (606)
T 3c98_A 466 ST----LRR------RSKPERKE-RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS----------- 523 (606)
T ss_dssp CT----TTC------CCCCCCCC-CCCCCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC-----------------
T ss_pred cc----ccc------ccchhhcc-CCcccccceecchHHHHHHHHHHHhCCCCcccCcccCCCCccccc-----------
Confidence 11 100 00111111 256788999999999999999999999999999998754321110
Q ss_pred ccccccCCCCCcccCCCCCCCCCCccchhcccccccccCCcEEEEEEEcCcCHHHHHHHHHHHhhC-CCeEEEccCcccC
Q 006029 563 VAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKL-NREIILGSTSLDD 641 (664)
Q Consensus 563 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVf~iGGvTysEi~al~~L~~~~-~~~iiigsT~Ii~ 641 (664)
....+.++++|.++..++. ...+++||||||||+||+|+|++|+++++. +++|+||||+|+|
T Consensus 524 --~~~~~~~~~~~~~~~~~~~---------------~~~~~~iIVFvvGGvTy~E~~~l~~ls~~~~~~~viiGsT~Iln 586 (606)
T 3c98_A 524 --TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILT 586 (606)
T ss_dssp -------------------------------------CCCSEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEEC
T ss_pred --ccccccccCCccccCCCCC---------------CCCCCEEEEEEECCcCHHHHHHHHHHHHHcCCcEEEEEeCCeeC
Confidence 1112223456765443211 135688999999999999999999999876 4799999999999
Q ss_pred hhHHHHHHhccCCCC
Q 006029 642 PPQFITKMKMLTVDE 656 (664)
Q Consensus 642 ~~~fl~~l~~l~~~~ 656 (664)
|++||++|..|++++
T Consensus 587 ~~~fl~~L~~L~k~~ 601 (606)
T 3c98_A 587 PQKLLDTLKKLNKTD 601 (606)
T ss_dssp HHHHHHHHTTTTSCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 999999999999864
No 4
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=3.2e-103 Score=901.19 Aligned_cols=600 Identities=25% Similarity=0.478 Sum_probs=471.3
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCchhhhhcCceEEeeccCCCCCCCCCeEEEEecCCH
Q 006029 17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK 96 (664)
Q Consensus 17 ~l~~~~~~~l~~~~l~~v~~~~~~~~~KvLilD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~R~~~~~~~aIy~i~Pt~ 96 (664)
+|++++|++|++++| +++. ..+|||||+|+.++++||++|++++|+++||++|+.|+..|+|+|+++|||||+|+.
T Consensus 3 ~l~~~~r~~ll~~~l-~v~~---~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIyfv~Pt~ 78 (650)
T 2xhe_A 3 SLKSAVKTVLTNSLR-SVAD---GGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTE 78 (650)
T ss_dssp CHHHHHHHHHHHHHT-TCCC---CSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTTSEEEEEECSCH
T ss_pred cHHHHHHHHHHHHHh-cccc---CCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCCCCEEEEEcCCH
Confidence 599999999998899 8853 236999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCccccccceeEEecceEeccCCceeeCCcchhhhhcCCCC
Q 006029 97 ENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEE 176 (664)
Q Consensus 97 ~~i~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~df~pld~~lfsl~~~~~~~~l~~~~~ 176 (664)
+||++|++||+...|+|+.|||+|++.+|+.+++.+|+. ++.+.|.++.|+++||+|+|+|+|||++|++|..+|.+..
T Consensus 79 ~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~ 157 (650)
T 2xhe_A 79 ENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASA-KAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRS 157 (650)
T ss_dssp HHHHHHHHHHHSSSCSBSCEEEEESSCCCHHHHHHHHHS-GGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTG
T ss_pred HHHHHHHHHHhhcCCCcceEEEEeCCCCCHHHHHHHHhc-chhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCcc
Confidence 999999999985447999999999999999999999974 5788998999999999999999999999999999996422
Q ss_pred CccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCC---CCCCCe
Q 006029 177 NSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENF---PQTETC 253 (664)
Q Consensus 177 ~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~ia~~la~~l~~~l~~~~~~~~~~---~~~~~~ 253 (664)
....++.+|++|+++|.++|.+|.|||+|+++ ..|+++|+.+++.|.+ ..+...+ +...++
T Consensus 158 ----~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~-----------~~a~~la~~l~~~l~~-~~~~~~~~~~~~~~~~ 221 (650)
T 2xhe_A 158 ----SSYNIDHLVRRLSTLCTTMNVAPIVRYSSTST-----------PGTERMAMQLQKEIDM-SVSQGLINAREGKLKS 221 (650)
T ss_dssp ----GGCCHHHHHHHHHHHHHHHTCCCEEEECTTCC-----------HHHHHHHHHHHHHHHH-HHTTTSCCCCCCSSCC
T ss_pred ----chHHHHHHHHHHHHHHHHcCCCCEEEecCCCc-----------hHHHHHHHHHHHHHHh-hccCCcccCCCCCCCC
Confidence 25679999999999999999999999998741 2477888888777765 2222211 334589
Q ss_pred eEEEEcCCCCcccchhhhhhhhHHhhhhcccCCCeEEEeecCCCCCCCcceEEecCCCchHHHHhhhccHHHHHHHHHHH
Q 006029 254 DLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEK 333 (664)
Q Consensus 254 ~LiIlDR~~D~~TPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~ 333 (664)
+|||+||++|++|||+||||||||+||+|||++|+|+++.+.. ++..+++++.|+++|+||.++||+||++|++.|+++
T Consensus 222 ~LiIlDR~~D~vTPLlhq~TYqaLi~dll~I~~n~v~~~~~~~-~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~ 300 (650)
T 2xhe_A 222 QFLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYSTVDA-GGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSS 300 (650)
T ss_dssp EEEEECGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECCS-SCCSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHH
T ss_pred EEEEEcCCcchhhhccccchHHHHHHHHhcCcCCEEEEEecCC-CCCccceEEeCCCCCHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986432 234557889999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhh-cccCCCCCCHHHHHHHHHhccchHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcCCC
Q 006029 334 MTSFISKNKAAQIQH-SARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA 412 (664)
Q Consensus 334 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~ 412 (664)
+++|+++++. .+. +...++..+++||++||++||+|+++++.+++|++||++|++.+++ +|++++++||+|++|.+
T Consensus 301 ~~~~~~~~~~--~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d 377 (650)
T 2xhe_A 301 FDEFCVSARR--LQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEE 377 (650)
T ss_dssp HHHHHHHHHH--TTTCCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBC
T ss_pred HHHHHHHhhh--hccccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCc
Confidence 9999987653 221 0011245799999999999999999999999999999999999999 99999999999998875
Q ss_pred C--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCC
Q 006029 413 G--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKS 484 (664)
Q Consensus 413 ~--------~~~l~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~ 484 (664)
. .+.+.++|. +...+..|||||+|||++++ +|+++++++++++.||++.+++.++.||+++|+...+..
T Consensus 378 ~~g~~~~~~~~~i~~ll~-~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~- 454 (650)
T 2xhe_A 378 QDGNKVRDFIGEVASVVV-DRRVSTEDKLRCLMLCVLAK-NGTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADR- 454 (650)
T ss_dssp SSCCBCCCHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCGGGGHHHHGGGGGTCCCBGGG-
T ss_pred ccccchhHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc-
Confidence 3 245677776 46789999999999999999 489998999999999999999999999999999866321
Q ss_pred CCCCCCchhhhhhhhcccccCCCCCccccccccccHHHHHHHHHHhcCCCCCCCCCccCCCCCCccccccccccCCCccc
Q 006029 485 STGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVA 564 (664)
Q Consensus 485 ~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 564 (664)
+.. +.+...+++ ...+|+||||+|+++|+||.+++++++++.||++.++.....+.+...+....++.
T Consensus 455 --~~~-------~~~~~~rk~---~~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 522 (650)
T 2xhe_A 455 --RGR-------KPKTMKRIE---RDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDG 522 (650)
T ss_dssp --CCC-------CCCCCCCCC---CCCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC------------
T ss_pred --ccc-------ccccccccc---cCCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCcccccccccccccccccc
Confidence 100 011111112 22389999999999999999999999999999997543211110000000000000
Q ss_pred ccccCCCCCcccCCCCCCCC----CCccchhcccc-cccccCCcEEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcc
Q 006029 565 HSMRSRRTPTWARPRNSDDG----YSSDSVLRHAS-SDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSL 639 (664)
Q Consensus 565 ~s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~viVf~iGGvTysEi~al~~L~~~~~~~iiigsT~I 639 (664)
...++.+.++|.+....... .++++..+... ++....++++||||||||||+|+|++|+|+++.|++|+||||+|
T Consensus 523 ~~~~s~~~~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~~~~~viigsT~I 602 (650)
T 2xhe_A 523 PATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSSGYEVYIGAHNI 602 (650)
T ss_dssp ---------------------------------------CCCSCEEEEEEEEEECHHHHHHHHHHHTTSSSEEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhcCCCEEEEeeCCc
Confidence 11223445688875432211 00011111000 00123568899999999999999999999999999999999999
Q ss_pred cChhHHHHHHhccCCCC
Q 006029 640 DDPPQFITKMKMLTVDE 656 (664)
Q Consensus 640 i~~~~fl~~l~~l~~~~ 656 (664)
+||++||+++..|++++
T Consensus 603 ln~~~fl~~l~~l~~~~ 619 (650)
T 2xhe_A 603 ATPAEFVELVSLLDKAD 619 (650)
T ss_dssp CCHHHHHHHHHTTTC--
T ss_pred CCHHHHHHHHHHcCCCc
Confidence 99999999999999874
No 5
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=1.9e-103 Score=897.10 Aligned_cols=575 Identities=30% Similarity=0.541 Sum_probs=467.8
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhHhhhccCchhhhhcCceEEeeccCCCCCCCCCeEEEEecCCH
Q 006029 17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK 96 (664)
Q Consensus 17 ~l~~~~~~~l~~~~l~~v~~~~~~~~~KvLilD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~R~~~~~~~aIy~i~Pt~ 96 (664)
+|++++|++++++|++.++. .++|||||+|+.++++||++|++++|+++||++|+.|+..|+|+|+++|||||+|+.
T Consensus 2 ~l~~~~~~~~~~~i~~~~~~---~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIy~v~Pt~ 78 (591)
T 1epu_A 2 ALKTAVHEKIMNDVVLAVKK---NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTE 78 (591)
T ss_dssp CHHHHHHHHHHHHTHHHHCS---SSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCCH
T ss_pred ChHHHHHHHHHHHHHHhhcc---CCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCCCCeEEEecCCH
Confidence 58999999999999999864 237999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCccccccceeEEecceEeccCCceeeCCcchhhhhcCCC
Q 006029 97 ENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE 175 (664)
Q Consensus 97 ~~i~~i~~d~~~~-~~~y~~~~i~F~~~~~~~~le~la~~~~~~~~i~~i~e~~~df~pld~~lfsl~~~~~~~~l~~~~ 175 (664)
+||++|++|++.+ .|+|++|||+|++.+|+.+++.||+. ++.+.|.++.|+++||+|+|+|+|||++|++|..+|.+.
T Consensus 79 ~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~ 157 (591)
T 1epu_A 79 ESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKS-TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPS 157 (591)
T ss_dssp HHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHS-TTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGG
T ss_pred HHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHhC-chHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCCc
Confidence 9999999999742 47999999999999999999999975 578888899999999999999999999999999999863
Q ss_pred CCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCCCC---CCC
Q 006029 176 ENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ---TET 252 (664)
Q Consensus 176 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~ia~~la~~l~~~l~~~~~~~~~~~~---~~~ 252 (664)
. .......++.+|++|+++|.++|.+|.|||+|++. .|+++|+.++++|.++..+.+.|+. .++
T Consensus 158 ~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~------------~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (591)
T 1epu_A 158 R-AQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFD------------ENASFAQLVQQKLDAYRADDPTMGEGPQKDR 224 (591)
T ss_dssp G-STTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTST------------HHHHHHHHHHHHHHHHHHTCTTTTCHHHHTS
T ss_pred c-hhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCCc------------HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 1 12236789999999999999999999999998842 4788999999888887665555532 357
Q ss_pred eeEEEEcCCCCcccchhhhhhhhHHhhhhcccCCCeEEEeecCCCCCCCcceEEecCCCchHHHHhhhccHHHHHHHHHH
Q 006029 253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHE 332 (664)
Q Consensus 253 ~~LiIlDR~~D~~TPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~ 332 (664)
++|||+||++|++|||+||||||||+||+|||++|+|+++.+ .++..+++++.|+++|+||.++||+||++|++.|++
T Consensus 225 ~~LiIlDR~~D~vTPLlhq~TYqali~dll~I~~n~v~~~~~--~~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~ 302 (591)
T 1epu_A 225 SQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNT--GGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTK 302 (591)
T ss_dssp CEEEEEEGGGCSSGGGSCCCBHHHHHHHHSCCBTTEECC-------------CEECCGGGSSHHHHTTSBHHHHHHHHHH
T ss_pred ceEEEECCCccchhhhhhhhhHHHHHHHHhCcCCCEEEEEec--CCCCccceEEeCCCCChHHHHHhccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753 122345688999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhccchHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcCCC
Q 006029 333 KMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA 412 (664)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~ 412 (664)
++++|+++++... .++..+++||++||++||+++++++.+++|++||++|++.+++ +|++++++||+|++|.+
T Consensus 303 ~~~~~~~~~~~~~------~~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d 375 (591)
T 1epu_A 303 KLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTD 375 (591)
T ss_dssp HHHHHHHHTC--------------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBC
T ss_pred HHHHHHHhccccc------cccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCC
Confidence 9999988754211 0134688999999999999999999999999999999999999 99999999999999875
Q ss_pred C--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCC
Q 006029 413 G--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKS 484 (664)
Q Consensus 413 ~--------~~~l~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~ 484 (664)
. .+.++++|. +...+.+|||||+|||++++ +|++++++.++++.||++.+++.++.||+++|+...+...
T Consensus 376 ~~g~~~k~~~~~i~~~l~-~~~~~~~dkLRLl~Ly~l~~-~g~~~~~l~~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~ 453 (591)
T 1epu_A 376 ADGEKIRDHMRNIVPILL-DQKISAYDKIRIILLYIIHK-GGISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGG 453 (591)
T ss_dssp TTSCBCCCCHHHHHHHHT-CTTSCHHHHHHHHHHHHHHH-TCBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCTT
T ss_pred ccccccchHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcCCccccCCc
Confidence 2 135677776 45789999999999999999 4899888999999999998999999999999987653321
Q ss_pred CCCCCCchhhhhhhhcccccCCCCCccccccccccHHHHHHHHHHhcCCCCCCCCCccCCCCCCccccccccccCCCccc
Q 006029 485 STGAFSLKFDINKKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVA 564 (664)
Q Consensus 485 ~~~~~~~~f~~~k~~~~~~~~~~~~~~~y~~s~y~Pli~~lve~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 564 (664)
+...+.. + ..+. .+. .+.+..|+||||+|+++++||.+++++++++.||+++++.+....
T Consensus 454 ~~~~~~~-~-~~~~----~~~-~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~~~------------- 513 (591)
T 1epu_A 454 RRKIPQP-Y-HTHN----RKE-RQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSC------------- 513 (591)
T ss_dssp SCCCCCT-T-SGGG----SCC-CCSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC------------------
T ss_pred ccccccc-c-cccc----ccc-CCCCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCCcccc-------------
Confidence 1111111 0 0000 111 356788999999999999999999999999999999754321000
Q ss_pred ccccCCCCCcccCCCCCCCCCCccchhcccccccccCCcEEEEEEEcCcCHHHHHHHHHHHh--hCCCeEEEccCcccCh
Q 006029 565 HSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTR--KLNREIILGSTSLDDP 642 (664)
Q Consensus 565 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVf~iGGvTysEi~al~~L~~--~~~~~iiigsT~Ii~~ 642 (664)
...++.++++|.+.++... ...++++|||||||+||+|+|++|++++ ..|++|+||||+|+||
T Consensus 514 ~~~~s~~~~~~~~~~~~~~---------------~~~~~~viVF~vGG~Ty~E~~~l~~l~~~~~~~~~viigsT~i~n~ 578 (591)
T 1epu_A 514 QQPVSVRYGHWHKDKGQAS---------------YKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTP 578 (591)
T ss_dssp -----------------------------------CCCCEEEEEEETCBCHHHHHHHHHHHTSSCSSCEEEEEESSBCCH
T ss_pred CCccccccCcccCCCCccc---------------cCCCCeEEEEEECCCCHHHHHHHHHHHhhccCCCeEEEecCCcCCH
Confidence 0112233457876433210 1245679999999999999999999998 5689999999999999
Q ss_pred hHHHHHHhccCC
Q 006029 643 PQFITKMKMLTV 654 (664)
Q Consensus 643 ~~fl~~l~~l~~ 654 (664)
++|+++|..|++
T Consensus 579 ~~fl~~l~~l~~ 590 (591)
T 1epu_A 579 EGLLRDLRKISN 590 (591)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=2.8e-92 Score=812.40 Aligned_cols=580 Identities=19% Similarity=0.312 Sum_probs=436.0
Q ss_pred chhHHHHHHHHHHHHHHHhccCC-----C----------CCCCeEEEEEeccchhHhhhccCchhhhhcCceEEeeccCC
Q 006029 15 YKNFKQISRERLLYEMLRSAKTG-----T----------SKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRR 79 (664)
Q Consensus 15 ~~~l~~~~~~~l~~~~l~~v~~~-----~----------~~~~~KvLilD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~ 79 (664)
..+||+.+++.|+ +||...+.+ . .+++|||||+|+.++++||++|++++|+++||++|+.|+..
T Consensus 16 ~~~lr~~q~~~l~-~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~~ 94 (671)
T 1mqs_A 16 DISLRDMQISAIL-KMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQD 94 (671)
T ss_dssp CCCHHHHHHHHHH-HHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSC
T ss_pred cccHHHHHHHHHH-HHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccCC
Confidence 4679999999999 799876520 1 24679999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhc---CCccccccceeEEecceEecc
Q 006029 80 RQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKD---STVLPRIGALREMNLEYFAID 156 (664)
Q Consensus 80 R~~~~~~~aIy~i~Pt~~~i~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~---~~~~~~i~~i~e~~~df~pld 156 (664)
|+|+|+++|||||+|+.++|++|++||+. |+|++|||+|++.+|+.+++.||+. .++.+.|.+|.|+++||+|+|
T Consensus 95 r~~~~~~~aIYfv~Pt~~ni~~i~~d~~~--~~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfiple 172 (671)
T 1mqs_A 95 RSPLPDVPAIYFVSPTKENIDIIVNDLKS--DKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTE 172 (671)
T ss_dssp CCCEEEEEEEEEECSCHHHHHHHHHHHHH--TCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECS
T ss_pred CCCCCCceEEEEeCCCHHHHHHHHHHhhh--cccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeecc
Confidence 99999999999999999999999999974 7899999999999999999999873 678899989999999999999
Q ss_pred CCceeeCCcchhhhhcCCCCCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHH
Q 006029 157 SQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNC 236 (664)
Q Consensus 157 ~~lfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~ia~~la~~l~~~ 236 (664)
+++|+|++|++|..+|.+..+.......++.+|++|+++|.++|.+|.|||..++ .|+.+|+.+..+
T Consensus 173 ~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~-------------~a~~va~~L~~~ 239 (671)
T 1mqs_A 173 PELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGG-------------PAEIIAEKLGTK 239 (671)
T ss_dssp TTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSS-------------HHHHHHHHHHHH
T ss_pred CCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCC-------------hHHHHHHHHHHH
Confidence 9999999999999999876443334578999999999999999999999985432 245555555555
Q ss_pred HHHhhhhc--CCC------CCCCCeeEEEEcCCCCcccchhhhhhhhHHhhhhcccCCCeEEEeecCCCC-------CCC
Q 006029 237 LMKYKQSI--ENF------PQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTG-------GPP 301 (664)
Q Consensus 237 l~~~~~~~--~~~------~~~~~~~LiIlDR~~D~~TPLlh~~TYqaLi~el~~I~~~~v~~~~~~~~g-------~~~ 301 (664)
+..+.... ..| +...+++|||+||++|++|||+||||||||+||+|||++|+|+++.+...+ ...
T Consensus 240 l~~~~~~~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~ 319 (671)
T 1mqs_A 240 LRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPL 319 (671)
T ss_dssp HHHHHHTTCC------------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------
T ss_pred HHHHHhhccccccccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCccccccccccc
Confidence 54432211 123 123578999999999999999999999999999999999999997532211 013
Q ss_pred cceEEecCCCchHHHHhhhccHHHHHHHHHHHHHHHHHHhHHHHhhh--ccc------CCCCCCHHHHHHHHHhccchHH
Q 006029 302 EKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQH--SAR------DGGELSTKDLQKMVQALPQYSD 373 (664)
Q Consensus 302 ~~k~~~l~~~D~~~~~~R~~~~~~v~~~l~~~~~~~~~~~~~~~~~~--~~~------~~~~~s~~~~~~~v~~lp~~~~ 373 (664)
+++++.|+++|+||.++||+||++|++.|.+++++|+++++. +++ +.. .....+++||++||++||+|++
T Consensus 320 ~~k~~~L~~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~ 397 (671)
T 1mqs_A 320 ATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAAE--ITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTA 397 (671)
T ss_dssp CCEEECCCSSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHH--HHHHC--------------------CCCCSCHHHHH
T ss_pred cceEEecCCCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH--HhcccCccCcccccccccccHHHHHHHHHHhHHHHH
Confidence 468899999999999999999999999999999999987642 322 100 1224679999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcCCCChHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHH-
Q 006029 374 QIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKG- 452 (664)
Q Consensus 374 ~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~~~~~l~~~i~~~~~~~~~dkLRLl~L~~l~~~~g~~~~~~- 452 (664)
+++.+++|++||++|++.+++++|++++++||+|+ |....+.++++|.+....+..|||||+|||++++++|++++++
T Consensus 398 ~~~~l~~H~~ia~~l~~~i~~~~l~~~~e~EQ~l~-~~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~~ 476 (671)
T 1mqs_A 398 KKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPG-STKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQ 476 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCHHHHHHTSCCS-SHHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh-cCchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999997 4433567888997422359999999999999998328888764
Q ss_pred --HHHHHHcCCChhHHHHHHHHHHhcCc---cccCCC------C---CCC-CCchhhhhhhhcccccCCCCCccccccc-
Q 006029 453 --QNIMKLARLQSDDITAVNNMRLLGGA---SDIKKS------S---TGA-FSLKFDINKKKRAVRKDRTGEEQTWQLS- 516 (664)
Q Consensus 453 --~~llq~~g~~~~~~~~l~~L~~lg~~---~~~~~~------~---~~~-~~~~f~~~k~~~~~~~~~~~~~~~y~~s- 516 (664)
++.++.+|++...+..+.++..++.. ...... . .+. |+..+. +-..+.+.... .......+
T Consensus 477 ~l~~~l~~~G~~~~~~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~~~-r~~~~~~~~g~--~~~~~~v~n 553 (671)
T 1mqs_A 477 NVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIY-GLTEGKLQGGV--GSLISGIKK 553 (671)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHHHHHHSCCCCC------------------C-HHHHHTTTSSC--SSSHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcccccccccccccccccccccccccccccHH-HHHHHHhccch--hhHHHhHHh
Confidence 55678899976566666555544211 110000 0 011 221110 00001111010 00011122
Q ss_pred ----cccHHHHHHHHHHhcC-----C--CCCCCCCccCCCCCCccccccccccCCCcccccccCCCCCcccCCCCCCCCC
Q 006029 517 ----RFYPMIEELIEKLGKR-----E--LPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGY 585 (664)
Q Consensus 517 ----~y~Pli~~lve~~~~~-----~--l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 585 (664)
.+.|.+++++|.++++ + ++.++||+++ |.....+ .+...
T Consensus 554 ~~P~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~-p~~~~~~-------------~~~~~---------------- 603 (671)
T 1mqs_A 554 LLPEKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYID-PKITRGS-------------HTRKP---------------- 603 (671)
T ss_dssp TCCCCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEEC-TTSSSCS-------------SSCCC----------------
T ss_pred hCCCcccchHHHHHHHHHhccccccccCCCccCceeeC-CCCcCCC-------------CCCCc----------------
Confidence 3456689999999998 3 5567899986 3211000 00000
Q ss_pred CccchhcccccccccCCcEEEEEEEcCcCHHHHHHHHHHHhhC---CCeEEEccCcccChhHHHHHHhccCCCCCC
Q 006029 586 SSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKL---NREIILGSTSLDDPPQFITKMKMLTVDELS 658 (664)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~viVf~iGGvTysEi~al~~L~~~~---~~~iiigsT~Ii~~~~fl~~l~~l~~~~~~ 658 (664)
.+.+++++|||||||+||+|++++|+++++. |++|+||||+|+||++||++|..|+++..+
T Consensus 604 ------------~~~~~~~viVFvVGG~Ty~E~~~l~~l~~~~~~~~~~viiGsT~I~n~~~Fl~~l~~l~~~~~~ 667 (671)
T 1mqs_A 604 ------------KRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLGASNSS 667 (671)
T ss_dssp ------------CCCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEESSBCCHHHHHHHHHHHHHHTTC
T ss_pred ------------ccCCCCeEEEEEECCccHHHHHHHHHHHhhccCCCceEEEeeccccCHHHHHHHHHHhCccccc
Confidence 0024689999999999999999999999883 799999999999999999999999876533
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.95 E-value=1.1e-28 Score=228.99 Aligned_cols=133 Identities=25% Similarity=0.455 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHHHHhccCC----CCCCCeEEEEEeccchhHhhhccCchhhhhcCceEEeeccCCCCCCCCCeEEEE
Q 006029 16 KNFKQISRERLLYEMLRSAKTG----TSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYF 91 (664)
Q Consensus 16 ~~l~~~~~~~l~~~~l~~v~~~----~~~~~~KvLilD~~~~~ils~~~~~s~L~~~gV~~i~~l~~~R~~~~~~~aIy~ 91 (664)
.+|++.+|+.|+ +||+.+++. ....+|||||+|+.++++||++|+++||+++||++|+.|+++|+|+|+++||||
T Consensus 20 ~sLr~~qr~~l~-~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~~~aIYf 98 (159)
T 1y9j_A 20 ASIRERQTVALK-RMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRDVPAVYF 98 (159)
T ss_dssp CHHHHHHHHHHH-HHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTTSCCEEE
T ss_pred HHHHHHHHHHHH-HHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCCCCEEEE
Confidence 479999999999 699986531 124679999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHh---cCCccccccceeEEecc
Q 006029 92 IQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLE 151 (664)
Q Consensus 92 i~Pt~~~i~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~---~~~~~~~i~~i~e~~~d 151 (664)
|+||.+||++|++||++ |+|++|||||++.+|+.++++||+ +.+..++|.+|.|+++|
T Consensus 99 v~Pt~enI~~i~~D~~~--~~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 99 VMPTEENIDRLCQDLRN--QLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp ECCCHHHHHHHHHHHHH--TCBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred ecCCHHHHHHHHHHhhh--cccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 99999999999999974 899999999999999999999997 35678888888888765
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=42.33 E-value=55 Score=21.70 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHhccchHHHHhhHHHHHHHHHH
Q 006029 356 LSTKDLQKMVQALPQYSDQIDKLSLHVEIAGK 387 (664)
Q Consensus 356 ~s~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~ 387 (664)
.++.++++++..|.+-..+.+++.-|+..+..
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 47788899988887777777788888776643
No 9
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=26.78 E-value=39 Score=32.51 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=32.3
Q ss_pred EEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHh
Q 006029 604 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK 650 (664)
Q Consensus 604 ~viVf~iGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~ 650 (664)
.+.|.|-|||+-.-+..+.+ .|.+++|.++.|+..++.-+.++
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~----aGAd~~V~GsaIf~~~d~~~~i~ 215 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISAS----HGANIIVAGTSIFNAEDPKYVID 215 (227)
T ss_dssp TCEEEEESSCCHHHHHHHHH----HTCCEEEESHHHHTCSSHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHH----cCCCEEEEeHHHhCCCCHHHHHH
Confidence 56789999999886666554 38999999999997654444433
No 10
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=23.00 E-value=59 Score=25.99 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=43.5
Q ss_pred EEEEcCcCHHHHHHH-HHHHhhC-----------CCeEEEccCcccChhHHHHHHhc--cCCCCCCcccc
Q 006029 607 VFIVGGATRSELRVC-HKLTRKL-----------NREIILGSTSLDDPPQFITKMKM--LTVDELSLDDI 662 (664)
Q Consensus 607 Vf~iGGvTysEi~al-~~L~~~~-----------~~~iiigsT~Ii~~~~fl~~l~~--l~~~~~~~~~~ 662 (664)
++..|-+|..|.... |+|++.. ..-++|.-.+-++-+++++.|+- ....+||++++
T Consensus 12 ~~kfg~It~EeA~~~QYeL~k~~avyRvFiNgYAk~g~ViFDe~kl~~e~lLeelkPEVi~ek~lTv~EL 81 (96)
T 2f40_A 12 IKFTTNLTPEEAKIVQYELSTRDEFYRVFINPYAKVAEVVIDDSKVNIEELKEKLKGEVIEEKEITLQEL 81 (96)
T ss_dssp EECCCSCTTTTTHHHHHTTTTTTTBCCCCCCTTTTCCEEECCBCSCSHHHHHHHTTTCSSCCCCCCCSSC
T ss_pred eeecCCCCHHHHHHHHHHhhcchhhhhheeccccccceEEECcccCCHHHHHHHcChhhcccccccHHHH
Confidence 344499999999888 6777652 45688888999999999996652 35778888886
No 11
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=21.90 E-value=37 Score=32.46 Aligned_cols=43 Identities=14% Similarity=0.136 Sum_probs=30.6
Q ss_pred EEEEEEEcCcCHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHh
Q 006029 604 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK 650 (664)
Q Consensus 604 ~viVf~iGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~ 650 (664)
.+-|++.||++-.-+..+... |.++++.++.|+..++.-+.++
T Consensus 173 ~~pi~v~GGI~~~ni~~~~~a----GaD~vvvGsai~~~~d~~~~~~ 215 (228)
T 1h1y_A 173 SLDIEVDGGLGPSTIDVAASA----GANCIVAGSSIFGAAEPGEVIS 215 (228)
T ss_dssp TSEEEEESSCSTTTHHHHHHH----TCCEEEESHHHHTSSCHHHHHH
T ss_pred CCCEEEECCcCHHHHHHHHHc----CCCEEEECHHHHCCCCHHHHHH
Confidence 346899999998655444332 9999999999997655444433
No 12
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=21.14 E-value=73 Score=29.90 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=36.5
Q ss_pred EEEEEEEcCc-CHHHHHHHHHHHhhCCCeEEEccCcccChhHHHHHHhcc
Q 006029 604 RIFVFIVGGA-TRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 652 (664)
Q Consensus 604 ~viVf~iGGv-TysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~~l 652 (664)
.+-|+..||| |...+..+... |.+.++.++.+..|....+.+.+.
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~~----Gad~v~vG~al~~p~~~~~~~~~~ 220 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMDL----GVHCSVVGGAITRPKEITKRFVQV 220 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHHT----TCSEEEECHHHHCHHHHHHHHHHT
T ss_pred CCCEEEecCCCCHHHHHHHHHc----CCCEEEEChHHcCcHHHHHHHHHH
Confidence 3678999999 88888777653 889888889999998888877643
Done!