BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006032
         (664 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P95334|DNAK_MYXXD Chaperone protein DnaK OS=Myxococcus xanthus (strain DK 1622)
           GN=dnaK PE=3 SV=2
          Length = 607

 Score = 35.0 bits (79), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 19/122 (15%)

Query: 54  KSLGCGKMVKERSVS---FKECELEAMISRTSSLSSDKEKDESIRSIRIKVNEMDNQSPR 110
           K LG GK+ + R VS     E E++AMIS   S +SD +K + +  +R   N  D     
Sbjct: 488 KDLGTGKVQQVRVVSNSGLSEAEIQAMISDAQSHASDDKKKKELAELR---NNADGLIYT 544

Query: 111 SEDSMETIQQFPILDPNNPKHEAAIKLQKVYKSFRTRRKLADCAVI------VEQSWWKL 164
           +E S+E   ++  L     + E    L+++ +   T    +D AV+      +E S +++
Sbjct: 545 TEKSLE---EYASLLSEKDREEIKADLERLKEVLNT----SDAAVLKESFQRLEGSAYRI 597

Query: 165 LD 166
            D
Sbjct: 598 AD 599


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.130    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 250,237,646
Number of Sequences: 539616
Number of extensions: 10847038
Number of successful extensions: 27330
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 162
Number of HSP's that attempted gapping in prelim test: 27167
Number of HSP's gapped (non-prelim): 315
length of query: 664
length of database: 191,569,459
effective HSP length: 124
effective length of query: 540
effective length of database: 124,657,075
effective search space: 67314820500
effective search space used: 67314820500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)