Query 006032
Match_columns 664
No_of_seqs 165 out of 181
Neff 3.0
Searched_HMMs 46136
Date Thu Mar 28 17:23:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006032.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006032hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 95.4 0.01 2.2E-07 39.5 1.9 20 131-150 1-20 (21)
2 smart00015 IQ Short calmodulin 92.9 0.078 1.7E-06 36.8 2.1 20 131-150 3-22 (26)
3 PRK11138 outer membrane biogen 64.2 16 0.00035 38.5 6.2 115 247-363 266-392 (394)
4 TIGR03300 assembly_YfgL outer 61.3 23 0.0005 36.7 6.7 50 313-362 320-376 (377)
5 cd02885 IPP_Isomerase Isopente 57.3 40 0.00087 31.8 7.0 79 297-395 6-95 (165)
6 PF13360 PQQ_2: PQQ-like domai 55.3 60 0.0013 30.6 7.8 76 293-369 12-98 (238)
7 PF08763 Ca_chan_IQ: Voltage g 54.0 9.4 0.0002 29.6 1.8 19 132-150 10-28 (35)
8 TIGR03300 assembly_YfgL outer 53.7 49 0.0011 34.3 7.6 93 277-369 68-167 (377)
9 TIGR02150 IPP_isom_1 isopenten 51.3 66 0.0014 30.3 7.4 77 296-394 2-89 (158)
10 PF13360 PQQ_2: PQQ-like domai 49.0 32 0.0007 32.4 5.0 86 283-368 45-143 (238)
11 PRK11138 outer membrane biogen 48.7 61 0.0013 34.3 7.5 92 278-369 73-182 (394)
12 PF02375 JmjN: jmjN domain; I 45.6 10 0.00022 28.9 0.9 17 369-385 3-19 (34)
13 PF13509 S1_2: S1 domain; PDB: 38.5 30 0.00064 28.4 2.6 36 246-291 13-48 (61)
14 PRK03759 isopentenyl-diphospha 38.1 1.3E+02 0.0029 29.0 7.4 60 314-393 37-97 (184)
15 KOG0377 Protein serine/threoni 32.5 24 0.00052 40.5 1.6 21 132-152 18-38 (631)
16 COG4632 EpsL Exopolysaccharide 29.8 72 0.0016 34.7 4.4 63 288-358 156-220 (320)
17 PF13570 PQQ_3: PQQ-like domai 27.8 59 0.0013 24.0 2.5 16 313-328 21-36 (40)
18 smart00701 PGRP Animal peptido 27.7 1.5E+02 0.0032 28.3 5.7 59 312-384 62-122 (142)
19 PF13344 Hydrolase_6: Haloacid 27.5 32 0.00069 30.5 1.2 59 317-391 1-59 (101)
20 cd00148 PROF Profilin binds ac 26.8 51 0.0011 30.6 2.5 60 339-401 9-75 (127)
21 smart00545 JmjN Small domain f 26.7 40 0.00087 26.8 1.5 29 369-397 5-36 (42)
22 KOG4427 E3 ubiquitin protein l 24.8 40 0.00086 40.9 1.7 23 130-152 29-51 (1096)
23 PF01453 B_lectin: D-mannose b 24.3 3.3E+02 0.0072 24.7 7.1 66 285-351 19-90 (114)
24 PF15537 Toxin_59: Putative to 23.1 97 0.0021 30.0 3.6 57 313-370 50-115 (125)
25 PF00235 Profilin: Profilin; 22.3 35 0.00076 30.5 0.5 59 339-401 9-74 (121)
26 cd04904 ACT_AAAH ACT domain of 21.4 99 0.0021 25.9 3.0 30 370-401 10-39 (74)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=95.42 E-value=0.01 Score=39.47 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=17.9
Q ss_pred hHHHHHHHHhhhhhhhhhcc
Q 006032 131 HEAAIKLQKVYKSFRTRRKL 150 (664)
Q Consensus 131 ~~AA~~iQk~Yr~yRtRR~L 150 (664)
+.||++||+.||+|..|+++
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhc
Confidence 35999999999999999875
No 2
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=92.90 E-value=0.078 Score=36.77 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=18.2
Q ss_pred hHHHHHHHHhhhhhhhhhcc
Q 006032 131 HEAAIKLQKVYKSFRTRRKL 150 (664)
Q Consensus 131 ~~AA~~iQk~Yr~yRtRR~L 150 (664)
..||++||+.||||..|++.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45999999999999999986
No 3
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=64.21 E-value=16 Score=38.52 Aligned_cols=115 Identities=17% Similarity=0.170 Sum_probs=62.7
Q ss_pred CccEEeecCCCccc---cCCCCCChhHHHhhhhhcCCccCccceEEEEeCCeEEEcccCc--eeccCCCCCCeEEEEEcC
Q 006032 247 PFFYWVDIGEGREV---NLVDKCPRWKLHQQCIKYLGPMERKPYEVIVKDGKFFYKQSGL--ILDTNVDIDSKWIFVLST 321 (664)
Q Consensus 247 ~FFyWLD~GeGkev---~L~~~CPR~kL~~q~IkYLspeERe~YeV~IedGrL~yk~sGe--lvDTt~~k~~kWIFVmDt 321 (664)
.-+|-||.-.|+.+ ++ ... ..-.-....-|+.-..-.-|-+...+|+++|.++.. ...++---.+..+||.+.
T Consensus 266 g~l~ald~~tG~~~W~~~~-~~~-~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~ 343 (394)
T PRK11138 266 GNLVALDLRSGQIVWKREY-GSV-NDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDS 343 (394)
T ss_pred CeEEEEECCCCCEEEeecC-CCc-cCcEEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeC
Confidence 46788888888765 22 111 110111122344443434444444577777765321 111110001345899999
Q ss_pred CCceEEeeccCCccccccCC-----CCCcccceeeEEEe--cCeeEEec
Q 006032 322 TKSLYVGKKRKGTFQHSSFL-----AGGATTAAGRLVVE--SGVLKAVW 363 (664)
Q Consensus 322 sg~LYVG~KkkG~FQHSSFL-----aGg~V~AAG~LvVk--NG~Lk~Is 363 (664)
+|.||+=....|.+.-+.-+ ...|+++-|+|.|- ||.|..|.
T Consensus 344 ~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 344 EGYLHWINREDGRFVAQQKVDSSGFLSEPVVADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCcceeCCEEECCEEEEEeCCceEEEEe
Confidence 99999876666776543322 23467777888774 78888775
No 4
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=61.28 E-value=23 Score=36.67 Aligned_cols=50 Identities=20% Similarity=0.187 Sum_probs=34.6
Q ss_pred CeEEEEEcCCCceEEeeccCCcccccc-----CCCCCcccceeeEEEe--cCeeEEe
Q 006032 313 SKWIFVLSTTKSLYVGKKRKGTFQHSS-----FLAGGATTAAGRLVVE--SGVLKAV 362 (664)
Q Consensus 313 ~kWIFVmDtsg~LYVG~KkkG~FQHSS-----FLaGg~V~AAG~LvVk--NG~Lk~I 362 (664)
+.-+||.+.+|.||+-....|.+.-+- -....++++-|.|.|- ||.|..+
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEECCEEEEEeCCceEEEe
Confidence 446999999999999887777776332 2334556666666663 7887664
No 5
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=57.26 E-value=40 Score=31.75 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=53.6
Q ss_pred EEcccCceeccCCC----CCCe------EEEEEcCCCceEEeeccCCccccccCCCCCcccceeeEEEecCeeEEecCCC
Q 006032 297 FYKQSGLILDTNVD----IDSK------WIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLKAVWPHS 366 (664)
Q Consensus 297 ~yk~sGelvDTt~~----k~~k------WIFVmDtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~LvVkNG~Lk~Isp~S 366 (664)
+|+++|+++.+... ..+- .++|.+.++++++.+...+.. .+.|.....+ +
T Consensus 6 ~~d~~~~~~g~~~r~~~~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~----~~Pg~w~~~~----------------g 65 (165)
T cd02885 6 LVDEDDNPIGTAEKLEAHLKGTLLHRAFSVFLFNSKGRLLLQRRALSKY----TFPGLWTNTC----------------C 65 (165)
T ss_pred EECCCCCCccccCHHHHhhcCCcceeEEEEEEEcCCCcEEEEeccCCCc----cCCCcccccc----------------c
Confidence 57788888776431 2233 489999999999987654332 2234433322 3
Q ss_pred CCCCCCHHHHHHHHHHHHH-cCCCCCCeee
Q 006032 367 GHYRPTEQNFNDFISFLKE-NNVDLTDVKM 395 (664)
Q Consensus 367 GHYRPT~eNf~~Fl~fL~E-~GVDLs~Vkv 395 (664)
||-.|.+.-....++.++| -|+....+..
T Consensus 66 G~ie~GEt~~eaa~REl~EEtGl~~~~~~~ 95 (165)
T cd02885 66 SHPLPGEGVKDAAQRRLREELGITGDLLEL 95 (165)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCccchhh
Confidence 8999999888899999887 6998765544
No 6
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=55.31 E-value=60 Score=30.65 Aligned_cols=76 Identities=26% Similarity=0.344 Sum_probs=50.3
Q ss_pred CCeEEEccc-----CceeccCCCCCCeEEEEEcCCCceEEeeccCCccccccCCCC----CcccceeeEEEe--cCeeEE
Q 006032 293 DGKFFYKQS-----GLILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLAG----GATTAAGRLVVE--SGVLKA 361 (664)
Q Consensus 293 dGrL~yk~s-----GelvDTt~~k~~kWIFVmDtsg~LYVG~KkkG~FQHSSFLaG----g~V~AAG~LvVk--NG~Lk~ 361 (664)
+|+.+|... +..+.+.- .++..+||.+.++.||+=....|....+.=+.+ .++...|.|.|- +|.|..
T Consensus 12 tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~ 90 (238)
T PF13360_consen 12 TGKELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYA 90 (238)
T ss_dssp TTEEEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEE
T ss_pred CCCEEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEe
Confidence 899998862 22332111 125679999999999998877776654333322 245666777654 688999
Q ss_pred ecCCCCCC
Q 006032 362 VWPHSGHY 369 (664)
Q Consensus 362 Isp~SGHY 369 (664)
|...+|+-
T Consensus 91 ~d~~tG~~ 98 (238)
T PF13360_consen 91 LDAKTGKV 98 (238)
T ss_dssp EETTTSCE
T ss_pred cccCCcce
Confidence 99899986
No 7
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=53.99 E-value=9.4 Score=29.65 Aligned_cols=19 Identities=21% Similarity=0.539 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhhhhhhhcc
Q 006032 132 EAAIKLQKVYKSFRTRRKL 150 (664)
Q Consensus 132 ~AA~~iQk~Yr~yRtRR~L 150 (664)
=||..||..||.|+.||.-
T Consensus 10 YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 10 YATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999864
No 8
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=53.68 E-value=49 Score=34.33 Aligned_cols=93 Identities=19% Similarity=0.217 Sum_probs=52.1
Q ss_pred hcCCccCccceEEEEeCCeEEEccc-CceeccCCCCCCeEEEEEcCCCceEEeeccCCccccccCCC----CCcccceee
Q 006032 277 KYLGPMERKPYEVIVKDGKFFYKQS-GLILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLA----GGATTAAGR 351 (664)
Q Consensus 277 kYLspeERe~YeV~IedGrL~yk~s-GelvDTt~~k~~kWIFVmDtsg~LYVG~KkkG~FQHSSFLa----Gg~V~AAG~ 351 (664)
-|++...-.-|-+-..+|+++|..+ +..+...---++..+||-+.+|+||+=....|.....-=+. ..+++..|.
T Consensus 68 v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~ 147 (377)
T TIGR03300 68 VYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGL 147 (377)
T ss_pred EEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCE
Confidence 3444433233344445788887643 11221111123567889888899998766555544321121 224444556
Q ss_pred EEE--ecCeeEEecCCCCCC
Q 006032 352 LVV--ESGVLKAVWPHSGHY 369 (664)
Q Consensus 352 LvV--kNG~Lk~Isp~SGHY 369 (664)
+.+ .+|.|..|.+.+|.-
T Consensus 148 v~v~~~~g~l~a~d~~tG~~ 167 (377)
T TIGR03300 148 VVVRTNDGRLTALDAATGER 167 (377)
T ss_pred EEEECCCCeEEEEEcCCCce
Confidence 655 378999999999863
No 9
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=51.35 E-value=66 Score=30.32 Aligned_cols=77 Identities=17% Similarity=0.206 Sum_probs=48.9
Q ss_pred EEEcccCceeccCC----C-C-----CCeEEEEEcCCCceEEeeccCCccccccCCCCCcccceeeEEEecCeeEEecCC
Q 006032 296 FFYKQSGLILDTNV----D-I-----DSKWIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLKAVWPH 365 (664)
Q Consensus 296 L~yk~sGelvDTt~----~-k-----~~kWIFVmDtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~LvVkNG~Lk~Isp~ 365 (664)
++|+.+|+++.+.. . + .+..++|+|..|++++.++..+.+ ...|.+...+|
T Consensus 2 ~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~----~~PG~W~~~~g--------------- 62 (158)
T TIGR02150 2 ILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKI----TWPGVWTNSCC--------------- 62 (158)
T ss_pred EEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCc----CCCCCcccccc---------------
Confidence 35566666665531 1 1 244589999999999987654332 23455444333
Q ss_pred CCCCCCCHHHHHHHHHHHHH-cCCCCCCee
Q 006032 366 SGHYRPTEQNFNDFISFLKE-NNVDLTDVK 394 (664)
Q Consensus 366 SGHYRPT~eNf~~Fl~fL~E-~GVDLs~Vk 394 (664)
||--+++ ....++.|+| -|+++..+.
T Consensus 63 -G~v~~GE--~eaa~REl~EE~Gl~~~~~~ 89 (158)
T TIGR02150 63 -SHPLPGE--LEAAIRRLREELGIPADDVP 89 (158)
T ss_pred -CCCCccc--HHHHHHHHHHHHCCCccccc
Confidence 6777776 3778888876 799887765
No 10
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=48.99 E-value=32 Score=32.42 Aligned_cols=86 Identities=26% Similarity=0.385 Sum_probs=46.1
Q ss_pred CccceEEEEeCCeEEEcccC-ceeccCCCCCCeEEEEEcCCCceEEeeccCCccccccCC---------CCCccccee-e
Q 006032 283 ERKPYEVIVKDGKFFYKQSG-LILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFL---------AGGATTAAG-R 351 (664)
Q Consensus 283 ERe~YeV~IedGrL~yk~sG-elvDTt~~k~~kWIFVmDtsg~LYVG~KkkG~FQHSSFL---------aGg~V~AAG-~ 351 (664)
+..-|-+-+.+|+++|..+- ..+.....-.+.-+||.+.++.||+=..+.|........ ........| .
T Consensus 45 ~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 124 (238)
T PF13360_consen 45 DGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR 124 (238)
T ss_dssp TSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE
T ss_pred CCEEEEEECCCCCEEEEeeccccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCE
Confidence 33333333447888877542 121111011244588888888888887777777766311 112222222 2
Q ss_pred EEE-e-cCeeEEecCCCCC
Q 006032 352 LVV-E-SGVLKAVWPHSGH 368 (664)
Q Consensus 352 LvV-k-NG~Lk~Isp~SGH 368 (664)
+.+ . +|.|..|.+..|.
T Consensus 125 ~~~~~~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 125 LYVGTSSGKLVALDPKTGK 143 (238)
T ss_dssp EEEEETCSEEEEEETTTTE
T ss_pred EEEEeccCcEEEEecCCCc
Confidence 333 2 6888777777774
No 11
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=48.70 E-value=61 Score=34.27 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=52.7
Q ss_pred cCCccCccceEEEEeCCeEEEcccCce------------eccCCCCCCeEEEEEcCCCceEEeeccCCcccccc----CC
Q 006032 278 YLGPMERKPYEVIVKDGKFFYKQSGLI------------LDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSS----FL 341 (664)
Q Consensus 278 YLspeERe~YeV~IedGrL~yk~sGel------------vDTt~~k~~kWIFVmDtsg~LYVG~KkkG~FQHSS----FL 341 (664)
|+.-....-|-+-.++|+++|+++-.. +..+---.+..+||.+.+|.||+=..+.|...-+- -.
T Consensus 73 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~ 152 (394)
T PRK11138 73 YAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEA 152 (394)
T ss_pred EEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCce
Confidence 444333333444445788888753221 11100012346889888999998766555543322 22
Q ss_pred CCCcccceeeEEEe--cCeeEEecCCCCCC
Q 006032 342 AGGATTAAGRLVVE--SGVLKAVWPHSGHY 369 (664)
Q Consensus 342 aGg~V~AAG~LvVk--NG~Lk~Isp~SGHY 369 (664)
...+++.-|+|.|- +|.|.++...+|--
T Consensus 153 ~ssP~v~~~~v~v~~~~g~l~ald~~tG~~ 182 (394)
T PRK11138 153 LSRPVVSDGLVLVHTSNGMLQALNESDGAV 182 (394)
T ss_pred ecCCEEECCEEEEECCCCEEEEEEccCCCE
Confidence 34466666777664 68899998888863
No 12
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=45.62 E-value=10 Score=28.90 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHHHHH
Q 006032 369 YRPTEQNFNDFISFLKE 385 (664)
Q Consensus 369 YRPT~eNf~~Fl~fL~E 385 (664)
|+||.++|.+|++|++.
T Consensus 3 f~Pt~eEF~dp~~yi~~ 19 (34)
T PF02375_consen 3 FYPTMEEFKDPIKYISS 19 (34)
T ss_dssp E---HHHHS-HHHHHHH
T ss_pred ccCCHHHHhCHHHHHHH
Confidence 68999999999999886
No 13
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=38.49 E-value=30 Score=28.44 Aligned_cols=36 Identities=36% Similarity=0.524 Sum_probs=22.5
Q ss_pred CCccEEeecCCCccccCCCCCChhHHHhhhhhcCCccCccceEEEE
Q 006032 246 EPFFYWVDIGEGREVNLVDKCPRWKLHQQCIKYLGPMERKPYEVIV 291 (664)
Q Consensus 246 q~FFyWLD~GeGkev~L~~~CPR~kL~~q~IkYLspeERe~YeV~I 291 (664)
..|.|+||.|++++|-| |.+.+.. ..+.-+.++|+|
T Consensus 13 ~~~g~fL~~~~~~~vlL----p~~e~~~------~~~~Gd~v~VFv 48 (61)
T PF13509_consen 13 NEFGYFLDDGEGKEVLL----PKSEVPE------PLKVGDEVEVFV 48 (61)
T ss_dssp -SSEEEEEETT-EEEEE----EGGG------------TTSEEEEEE
T ss_pred eCCEEEEECCCCCEEEe----chHHcCC------CCCCCCEEEEEE
Confidence 47889999999999987 4443321 256677788886
No 14
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=38.06 E-value=1.3e+02 Score=29.00 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=40.9
Q ss_pred eEEEEEcCCCceEEeeccCCccccccCCCCCcccceeeEEEecCeeEEecCCCCCCCCCHHHHHHHHHHHHH-cCCCCCC
Q 006032 314 KWIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLKE-NNVDLTD 392 (664)
Q Consensus 314 kWIFVmDtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~LvVkNG~Lk~Isp~SGHYRPT~eNf~~Fl~fL~E-~GVDLs~ 392 (664)
..++|++.+|++++.+...+.. .+-|...... .||-.|.+.-....++.|.| -|++...
T Consensus 37 v~v~i~~~~g~vLL~rR~~~~~----~~PG~w~~~~----------------gG~ve~GEt~~~aa~REl~EEtGl~~~~ 96 (184)
T PRK03759 37 FSCYLFDADGRLLVTRRALSKK----TWPGVWTNSC----------------CGHPQPGESLEDAVIRRCREELGVEITD 96 (184)
T ss_pred EEEEEEcCCCeEEEEEccCCCC----CCCCcccccc----------------cCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence 3488889889999986533321 1234333332 39999999888888888886 7998754
Q ss_pred e
Q 006032 393 V 393 (664)
Q Consensus 393 V 393 (664)
+
T Consensus 97 ~ 97 (184)
T PRK03759 97 L 97 (184)
T ss_pred c
Confidence 3
No 15
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=32.52 E-value=24 Score=40.45 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.7
Q ss_pred HHHHHHHHhhhhhhhhhccCC
Q 006032 132 EAAIKLQKVYKSFRTRRKLAD 152 (664)
Q Consensus 132 ~AA~~iQk~Yr~yRtRR~Lad 152 (664)
.||..|||-||.|-.|+++.-
T Consensus 18 kaAilIQkWYRr~~ARle~rr 38 (631)
T KOG0377|consen 18 KAAILIQKWYRRYEARLEARR 38 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999988754
No 16
>COG4632 EpsL Exopolysaccharide biosynthesis protein related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase [Carbohydrate transport and metabolism]
Probab=29.84 E-value=72 Score=34.74 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=40.9
Q ss_pred EEEEeCCeEEEcccCceeccCCCCCCeEEEEEcCCCceEEeeccCCccccccCCCCC-cc-cceeeEEEecCe
Q 006032 288 EVIVKDGKFFYKQSGLILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLAGG-AT-TAAGRLVVESGV 358 (664)
Q Consensus 288 eV~IedGrL~yk~sGelvDTt~~k~~kWIFVmDtsg~LYVG~KkkG~FQHSSFLaGg-~V-~AAG~LvVkNG~ 358 (664)
=++|.||+|+|.+| -.+....+-.|+++.+|+|-|+-.... -+-++.++ .+ .+-|-+.|+||+
T Consensus 156 GfqisdGklvkp~d-----w~~~t~ae~~~aftkdG~lkVyg~~sp---a~ll~sngaeasf~fgp~LIkdgk 220 (320)
T COG4632 156 GFQISDGKLVKPYD-----WAGYTGAEACVAFTKDGTLKVYGRESP---ADLLISNGAEASFAFGPWLIKDGK 220 (320)
T ss_pred EEEEeCCeEeecCC-----hhhhccccceEEEccCCcEEEcCCCCh---HHHHHhccceeeeeeccEEEecCC
Confidence 56788999998763 222222445788899999999943111 11233333 33 678999999996
No 17
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=27.84 E-value=59 Score=23.97 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=10.4
Q ss_pred CeEEEEEcCCCceEEe
Q 006032 313 SKWIFVLSTTKSLYVG 328 (664)
Q Consensus 313 ~kWIFVmDtsg~LYVG 328 (664)
+.-+||.+.+|+||+=
T Consensus 21 ~g~vyv~~~dg~l~al 36 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYAL 36 (40)
T ss_dssp TSEEEEE-TTSEEEEE
T ss_pred CCEEEEEcCCCEEEEE
Confidence 3457888888888763
No 18
>smart00701 PGRP Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. The bacteriophage molecule, but not its moth homologue, has been shown to have N-acetylmuramoyl-L-alanine amidase activity. One member of this family, Tag7, is a cytokine.
Probab=27.70 E-value=1.5e+02 Score=28.30 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCceEEeeccC--CccccccCCCCCcccceeeEEEecCeeEEecCCCCCCCCCHHHHHHHHHHHH
Q 006032 312 DSKWIFVLSTTKSLYVGKKRK--GTFQHSSFLAGGATTAAGRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLK 384 (664)
Q Consensus 312 ~~kWIFVmDtsg~LYVG~Kkk--G~FQHSSFLaGg~V~AAG~LvVkNG~Lk~Isp~SGHYRPT~eNf~~Fl~fL~ 384 (664)
|--+=|+++.+|++|.|..-. |. |.. | .-++.|.|. +--.-..+.||.+.+......|.
T Consensus 62 DIgYhflI~~dG~IyeGR~~~~~ga--h~~---g---~N~~sigI~------~iG~~~~~~pt~~q~~al~~Li~ 122 (142)
T smart00701 62 DIGYNFLVGGDGKVYEGRGWNVVGA--HTG---G---YNDISLGIA------FIGNFTDKLPTDAALDAAQDLLA 122 (142)
T ss_pred CcCCeEEEcCCCEEEECCCCCcccc--ccc---C---CCCCeEEEE------EEeCCCCCCCcHHHHHHHHHHHH
Confidence 445689999999999996521 22 211 1 112223222 12222457899888776655544
No 19
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=27.54 E-value=32 Score=30.54 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=40.0
Q ss_pred EEEcCCCceEEeeccCCccccccCCCCCcccceeeEEEecCeeEEecCCCCCCCCCHHHHHHHHHHHHHcCCCCC
Q 006032 317 FVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLKAVWPHSGHYRPTEQNFNDFISFLKENNVDLT 391 (664)
Q Consensus 317 FVmDtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~LvVkNG~Lk~Isp~SGHYRPT~eNf~~Fl~fL~E~GVDLs 391 (664)
|++|.+|.||.|.+ .+- |++-+--.|+-.+-.+..++|.|.+ .-..+.+.|+..|++.+
T Consensus 1 ~l~D~dGvl~~g~~---------~ip-ga~e~l~~L~~~g~~~~~lTNns~~------s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 1 FLFDLDGVLYNGNE---------PIP-GAVEALDALRERGKPVVFLTNNSSR------SREEYAKKLKKLGIPVD 59 (101)
T ss_dssp EEEESTTTSEETTE---------E-T-THHHHHHHHHHTTSEEEEEES-SSS-------HHHHHHHHHHTTTT--
T ss_pred CEEeCccEeEeCCC---------cCc-CHHHHHHHHHHcCCCEEEEeCCCCC------CHHHHHHHHHhcCcCCC
Confidence 78999999998743 233 3355555566666789999999874 33567788899999853
No 20
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=26.79 E-value=51 Score=30.59 Aligned_cols=60 Identities=20% Similarity=0.372 Sum_probs=45.8
Q ss_pred cCCCCCcccceeeEEEecCeeEEecCCCCC-CCCCHHHHHHHHHHHHH------cCCCCCCeeeccCCcc
Q 006032 339 SFLAGGATTAAGRLVVESGVLKAVWPHSGH-YRPTEQNFNDFISFLKE------NNVDLTDVKMSPVDAE 401 (664)
Q Consensus 339 SFLaGg~V~AAG~LvVkNG~Lk~Isp~SGH-YRPT~eNf~~Fl~fL~E------~GVDLs~Vkv~~~~~~ 401 (664)
.+++.+.+..|..+..+||. +|..|.- +.++.+++..+++.+++ +|+-+..++-..+..|
T Consensus 9 ~L~~~g~~~~aAI~g~d~g~---vwA~s~~~f~~t~~E~~~i~~~f~d~~~~~~~Gi~l~G~KY~~l~~d 75 (127)
T cd00148 9 NLLGTGKVDSAAIVGHDDGS---VWAASAGGFNLTPEEVGTLVAGFKDPDGVFSTGLTLGGQKYMVIRAD 75 (127)
T ss_pred HHhhcCCcCEEEEEecCCCC---eEEecCCCCccCHHHHHHHHHHccCccccccCCEEECCeEEEEEecC
Confidence 36666788888888887687 5888888 99999999999997765 6666666666555443
No 21
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=26.68 E-value=40 Score=26.76 Aligned_cols=29 Identities=21% Similarity=0.476 Sum_probs=21.6
Q ss_pred CCCCHHHHHHHHHHHHH---cCCCCCCeeecc
Q 006032 369 YRPTEQNFNDFISFLKE---NNVDLTDVKMSP 397 (664)
Q Consensus 369 YRPT~eNf~~Fl~fL~E---~GVDLs~Vkv~~ 397 (664)
|+||.++|..|+.|++. .|-..-=|||.+
T Consensus 5 f~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvP 36 (42)
T smart00545 5 FYPTMEEFKDPLAYISKIRPQAEKYGICKVVP 36 (42)
T ss_pred EcCCHHHHHCHHHHHHHHHHHHhhCCEEEEEC
Confidence 79999999999888875 455555556554
No 22
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.80 E-value=40 Score=40.90 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.3
Q ss_pred hhHHHHHHHHhhhhhhhhhccCC
Q 006032 130 KHEAAIKLQKVYKSFRTRRKLAD 152 (664)
Q Consensus 130 ~~~AA~~iQk~Yr~yRtRR~Lad 152 (664)
..+||..||++.|||=+|++++.
T Consensus 29 r~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 29 REAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34599999999999999999875
No 23
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=24.30 E-value=3.3e+02 Score=24.73 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=42.5
Q ss_pred cceEEEEe-CCeE-EEcccCceeccC-C--CCC-CeEEEEEcCCCceEEeeccCCccccccCCCCCcccceee
Q 006032 285 KPYEVIVK-DGKF-FYKQSGLILDTN-V--DID-SKWIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGR 351 (664)
Q Consensus 285 e~YeV~Ie-dGrL-~yk~sGelvDTt-~--~k~-~kWIFVmDtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~ 351 (664)
..|.+++. ||.| +|..+|..+-.+ . .+. .....+|..+|+|.+-.. .+..-=+||-....+...|.
T Consensus 19 ~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~~L~~~GNlvl~d~-~~~~lW~Sf~~ptdt~L~~q 90 (114)
T PF01453_consen 19 GNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYLVLQDDGNLVLYDS-SGNVLWQSFDYPTDTLLPGQ 90 (114)
T ss_dssp TTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEEEEETTSEEEEEET-TSEEEEESTTSSS-EEEEEE
T ss_pred ccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEEEEeCCCCEEEEee-cceEEEeecCCCccEEEecc
Confidence 45888886 9988 477776777443 2 222 356667777899999874 45555566777776665554
No 24
>PF15537 Toxin_59: Putative toxin 59
Probab=23.13 E-value=97 Score=30.01 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=35.3
Q ss_pred CeEEEEEcCCCceEEeecc----CCccccccCC----CCCcccceeeEEE-ecCeeEEecCCCCCCC
Q 006032 313 SKWIFVLSTTKSLYVGKKR----KGTFQHSSFL----AGGATTAAGRLVV-ESGVLKAVWPHSGHYR 370 (664)
Q Consensus 313 ~kWIFVmDtsg~LYVG~Kk----kG~FQHSSFL----aGg~V~AAG~LvV-kNG~Lk~Isp~SGHYR 370 (664)
+.--||.|...+.|+--.. .+.-+|--++ +-.+++.-|+|.= -||.|. -.-+||||-
T Consensus 50 G~~eFVFDP~~~~Fa~G~~~~~~~~~~~H~~la~~iGA~~s~vvGGr~~R~~~G~l~-TnewSGHyg 115 (125)
T PF15537_consen 50 GSIEFVFDPKTNRFAVGSPRDYGIDVSGHDQLARAIGADESTVVGGRFSRGPNGELS-TNEWSGHYG 115 (125)
T ss_pred CCccEEEcCCcCeEeecCCcccccccchHHHHHHhcCCCCCeeEeeEEEecCCCCEe-ecccccccc
Confidence 4457888877655554322 2555665443 3446666777776 577764 456899994
No 25
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=22.30 E-value=35 Score=30.54 Aligned_cols=59 Identities=20% Similarity=0.347 Sum_probs=44.2
Q ss_pred cCCCCCcccceeeEEEecCeeEEecCCCCCC-CCCHHHHHHHHHHHHH------cCCCCCCeeeccCCcc
Q 006032 339 SFLAGGATTAAGRLVVESGVLKAVWPHSGHY-RPTEQNFNDFISFLKE------NNVDLTDVKMSPVDAE 401 (664)
Q Consensus 339 SFLaGg~V~AAG~LvVkNG~Lk~Isp~SGHY-RPT~eNf~~Fl~fL~E------~GVDLs~Vkv~~~~~~ 401 (664)
.+++-+.+..|+.+- .||. +|..|+.+ ..+++++..+++.|++ .|+.+..++-.-+..|
T Consensus 9 ~L~~~~~~~~aaI~~-~dG~---vwA~s~~f~~~~~~E~~~i~~~f~~~~~~~~~gi~l~G~kY~~~~~d 74 (121)
T PF00235_consen 9 QLIGTGNITKAAIIG-SDGS---VWASSPGFSNISPEEAKAIIKAFNNPSKFPSNGITLGGKKYIVLRAD 74 (121)
T ss_dssp HHHTTSSESEEEEEE-TTSS---EEEEETTGGGCSHHHHHHHHHHHHSSSHHHHH-EEETTEEEEEEEEE
T ss_pred HhcccCcEeEEEEEc-CCCC---EEEecCCCCCCCHHHHHHHHHHhcCchhcccCCeEEcCcEeEEEecC
Confidence 345556688888888 9994 67777778 9999999999998776 5777777776554433
No 26
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.43 E-value=99 Score=25.90 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCeeeccCCcc
Q 006032 370 RPTEQNFNDFISFLKENNVDLTDVKMSPVDAE 401 (664)
Q Consensus 370 RPT~eNf~~Fl~fL~E~GVDLs~Vkv~~~~~~ 401 (664)
+|+. +...++.|+++||+|++|+=.|+...
T Consensus 10 ~pG~--L~~vL~~f~~~~iNlt~IeSRP~~~~ 39 (74)
T cd04904 10 EVGA--LARALKLFEEFGVNLTHIESRPSRRN 39 (74)
T ss_pred CCcH--HHHHHHHHHHCCCcEEEEECCCCCCC
Confidence 5654 99999999999999999999888654
Done!