Query 006032
Match_columns 664
No_of_seqs 165 out of 181
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 14:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l53_B CAM, voltage-gated sodi 95.0 0.013 4.5E-07 42.6 2.6 23 130-152 5-27 (31)
2 2kxw_B Sodium channel protein 94.7 0.015 5.2E-07 41.0 2.3 21 130-150 5-25 (27)
3 2ix7_C Myosin-5A; contractIle 90.3 0.14 4.8E-06 39.8 2.4 37 129-165 3-41 (58)
4 1n2d_C IQ2 and IQ3 motifs from 89.0 0.18 6.3E-06 37.7 2.1 18 132-149 29-46 (48)
5 4dck_A Sodium channel protein 79.2 0.78 2.7E-05 44.0 2.1 22 131-152 130-151 (168)
6 2ix7_C Myosin-5A; contractIle 76.2 1.1 3.8E-05 34.7 1.8 20 132-151 29-48 (58)
7 1n2d_C IQ2 and IQ3 motifs from 73.1 1.1 3.8E-05 33.4 1.1 21 132-152 4-24 (48)
8 3dve_B Voltage-dependent N-typ 60.0 2.8 9.7E-05 28.9 0.9 16 133-148 7-22 (23)
9 3dvk_B Voltage-dependent R-typ 56.0 5.3 0.00018 27.6 1.7 16 133-148 8-23 (23)
10 3bxl_B CAM, voltage-dependent 55.3 5.6 0.00019 28.1 1.8 18 133-150 4-21 (26)
11 3q7m_A Lipoprotein YFGL, BAMB; 46.6 32 0.0011 33.0 6.2 57 313-369 277-340 (376)
12 2dfs_A Myosin-5A; myosin-V, in 41.7 7.8 0.00027 45.8 1.3 34 132-165 792-829 (1080)
13 3ohg_A Uncharacterized protein 36.2 34 0.0012 34.8 4.8 66 284-360 109-174 (285)
14 4h3o_A Lectin; cadmium, plant 34.0 1.7E+02 0.0058 24.8 8.1 45 286-330 20-68 (105)
15 2be1_A Serine/threonine-protei 33.9 32 0.0011 35.4 4.2 93 276-368 12-132 (339)
16 3q7m_A Lipoprotein YFGL, BAMB; 32.9 61 0.0021 31.0 5.7 51 313-363 318-375 (376)
17 1kk8_A Myosin heavy chain, str 31.7 23 0.00079 40.9 3.0 33 132-164 780-817 (837)
18 3g43_E Voltage-dependent L-typ 30.4 19 0.00064 31.3 1.5 17 133-149 65-81 (81)
19 2l60_A Peptide YY; GPCR ligand 26.7 48 0.0017 25.6 3.0 30 199-229 11-41 (41)
20 1kk8_A Myosin heavy chain, str 26.0 20 0.0007 41.4 1.3 25 132-165 806-830 (837)
21 1f8p_A Neuropeptide Y (PNPY); 26.0 26 0.0009 26.5 1.4 28 201-229 9-37 (37)
22 3no2_A Uncharacterized protein 25.8 1.5E+02 0.005 28.2 7.0 25 345-369 171-198 (276)
23 1vd2_A Protein kinase C, IOTA 25.8 1.2E+02 0.0042 26.2 5.8 64 350-429 5-73 (89)
24 1w7j_A Myosin VA; motor protei 25.1 28 0.00097 40.0 2.2 20 131-150 768-787 (795)
25 2dfs_A Myosin-5A; myosin-V, in 24.3 33 0.0011 40.6 2.6 33 132-164 840-876 (1080)
26 3mez_A Mannose-specific lectin 23.4 3.3E+02 0.011 23.1 8.1 44 285-330 20-67 (111)
27 2bl0_A Major plasmodial myosin 22.0 48 0.0017 26.0 2.4 19 131-149 30-48 (63)
28 3gn4_A Myosin-VI; unconvention 21.5 42 0.0014 31.8 2.2 20 131-150 45-64 (148)
29 3mez_B Mannose-specific lectin 20.5 3.5E+02 0.012 23.0 7.7 46 285-330 24-74 (113)
No 1
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=94.97 E-value=0.013 Score=42.60 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=19.9
Q ss_pred hhHHHHHHHHhhhhhhhhhccCC
Q 006032 130 KHEAAIKLQKVYKSFRTRRKLAD 152 (664)
Q Consensus 130 ~~~AA~~iQk~Yr~yRtRR~Lad 152 (664)
.+.||+.||+.||+|+-||.+..
T Consensus 5 Ee~aA~vIQrA~R~yl~rr~~~~ 27 (31)
T 2l53_B 5 EEVSAMVIQRAFRRHLLQRSLKH 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 44599999999999999998764
No 2
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=94.74 E-value=0.015 Score=41.03 Aligned_cols=21 Identities=24% Similarity=0.555 Sum_probs=18.4
Q ss_pred hhHHHHHHHHhhhhhhhhhcc
Q 006032 130 KHEAAIKLQKVYKSFRTRRKL 150 (664)
Q Consensus 130 ~~~AA~~iQk~Yr~yRtRR~L 150 (664)
.+.||+.||+.||+|..||.+
T Consensus 5 Ee~aA~vIQrA~R~yl~~~~~ 25 (27)
T 2kxw_B 5 EEVSAIVIQRAYRRYLLKQKV 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 455999999999999999865
No 3
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=90.27 E-value=0.14 Score=39.81 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHhhhhhhhhhccCCc--ccchhhhHHHhh
Q 006032 129 PKHEAAIKLQKVYKSFRTRRKLADC--AVIVEQSWWKLL 165 (664)
Q Consensus 129 ~~~~AA~~iQk~Yr~yRtRR~Lad~--av~~e~rWw~al 165 (664)
-.+.||++||+.||||..|+..... +++.=+.||...
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~ 41 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGY 41 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456999999999999999876542 334446666553
No 4
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=88.99 E-value=0.18 Score=37.65 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhhhhhhc
Q 006032 132 EAAIKLQKVYKSFRTRRK 149 (664)
Q Consensus 132 ~AA~~iQk~Yr~yRtRR~ 149 (664)
.||++||+.+|||..|+.
T Consensus 29 ~aai~IQ~~~Rg~~~Rk~ 46 (48)
T 1n2d_C 29 NCATLLQAAYRGHSIRAN 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHh
Confidence 499999999999999875
No 5
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=79.21 E-value=0.78 Score=43.95 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=18.5
Q ss_pred hHHHHHHHHhhhhhhhhhccCC
Q 006032 131 HEAAIKLQKVYKSFRTRRKLAD 152 (664)
Q Consensus 131 ~~AA~~iQk~Yr~yRtRR~Lad 152 (664)
..||+.||+.||.|+-||++..
T Consensus 130 ~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 130 EVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccc
Confidence 3499999999999999977643
No 6
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=76.22 E-value=1.1 Score=34.67 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhhhhhhccC
Q 006032 132 EAAIKLQKVYKSFRTRRKLA 151 (664)
Q Consensus 132 ~AA~~iQk~Yr~yRtRR~La 151 (664)
.||++||..+|||..|+.+.
T Consensus 29 ~aai~IQ~~~Rg~~aR~~~~ 48 (58)
T 2ix7_C 29 RAAITVQRYVRGYQARCYAK 48 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999998764
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=73.15 E-value=1.1 Score=33.36 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=18.5
Q ss_pred HHHHHHHHhhhhhhhhhccCC
Q 006032 132 EAAIKLQKVYKSFRTRRKLAD 152 (664)
Q Consensus 132 ~AA~~iQk~Yr~yRtRR~Lad 152 (664)
.||+.||+.+|||-.|++...
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~ 24 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVND 24 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998743
No 8
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=60.05 E-value=2.8 Score=28.88 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=15.0
Q ss_pred HHHHHHHhhhhhhhhh
Q 006032 133 AAIKLQKVYKSFRTRR 148 (664)
Q Consensus 133 AA~~iQk~Yr~yRtRR 148 (664)
||..||..||.+|.||
T Consensus 7 AallI~d~~r~~k~~~ 22 (23)
T 3dve_B 7 AALMIFDFYKQNKTSR 22 (26)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999999886
No 9
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=56.03 E-value=5.3 Score=27.57 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=14.7
Q ss_pred HHHHHHHhhhhhhhhh...
Q 006032 133 AAIKLQKVYKSFRTRR... 148 (664)
Q Consensus 133 AA~~iQk~Yr~yRtRR... 148 (664)
||..||..||.+|.|+
T Consensus 8 A~llI~d~~r~~k~r~... 23 (23)
T 3dvk_B 8 AAMMIMDYYKQSKVKKxxx 26 (26)
T ss_dssp HHHHHHHHHHHHHHTC...
T ss_pred HHHHHHHHHHHHhccC...
Confidence 8999999999999875
No 10
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=55.33 E-value=5.6 Score=28.13 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=16.7
Q ss_pred HHHHHHHhhhhhhhhhcc
Q 006032 133 AAIKLQKVYKSFRTRRKL 150 (664)
Q Consensus 133 AA~~iQk~Yr~yRtRR~L 150 (664)
||..||..||.++.||.-
T Consensus 4 Aa~mI~e~yrq~K~~r~q 21 (26)
T 3bxl_B 4 AAMMIMDYYKQSKVKKQR 21 (26)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 899999999999999973
No 11
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=46.64 E-value=32 Score=32.96 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=39.7
Q ss_pred CeEEEEEcCCCceEEeeccCCccccccC-----CCCCcccceeeEEEe--cCeeEEecCCCCCC
Q 006032 313 SKWIFVLSTTKSLYVGKKRKGTFQHSSF-----LAGGATTAAGRLVVE--SGVLKAVWPHSGHY 369 (664)
Q Consensus 313 ~kWIFVmDtsg~LYVG~KkkG~FQHSSF-----LaGg~V~AAG~LvVk--NG~Lk~Isp~SGHY 369 (664)
+..+||.+.+|.||+=..+.|......- ....++++.|.|.+- +|.|..+.+.+|..
T Consensus 277 ~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 277 GNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp TTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCeEEEEECCCCcE
Confidence 3458888888888887766677654321 123456667777774 68999999988863
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=41.73 E-value=7.8 Score=45.79 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=22.3
Q ss_pred HHHHHHHHhhhhhhhhhccCC----cccchhhhHHHhh
Q 006032 132 EAAIKLQKVYKSFRTRRKLAD----CAVIVEQSWWKLL 165 (664)
Q Consensus 132 ~AA~~iQk~Yr~yRtRR~Lad----~av~~e~rWw~al 165 (664)
.||+.||+.||+|..|+.+.. .|++.=+.||...
T Consensus 792 ~aai~IQ~~~Rg~~aR~~~~~lr~~~AAi~IQs~~Rg~ 829 (1080)
T 2dfs_A 792 RAAITIQRYVRGHQARCYATFLRRTRAAIIIQKFQRMY 829 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHhhH
Confidence 488999999999988876542 2333335555543
No 13
>3ohg_A Uncharacterized protein from DUF2233 family; structural genomics, unknown function, joint center for STRU genomics, JCSG; HET: MSE; 1.80A {Bacteroides ovatus}
Probab=36.25 E-value=34 Score=34.79 Aligned_cols=66 Identities=18% Similarity=0.168 Sum_probs=37.0
Q ss_pred ccceEEEEeCCeEEEcccCceeccCCCCCCeEEEEEcCCCceEEeeccCCccccccCCCCCcccceeeEEEecCeeE
Q 006032 284 RKPYEVIVKDGKFFYKQSGLILDTNVDIDSKWIFVLSTTKSLYVGKKRKGTFQHSSFLAGGATTAAGRLVVESGVLK 360 (664)
Q Consensus 284 Re~YeV~IedGrL~yk~sGelvDTt~~k~~kWIFVmDtsg~LYVG~KkkG~FQHSSFLaGg~V~AAG~LvVkNG~Lk 360 (664)
+...=++|.||++++..++ . ....+|.++.+|+++|+.... |+-.. ..=.-++.+|-+.|+||++.
T Consensus 109 ~~P~G~~I~nG~~i~~~~~-----~---~~~~~f~i~~dG~~~I~~~~~--~~~~~-~~~~~av~~gp~Lv~nG~~~ 174 (285)
T 3ohg_A 109 RRVMGLFYKDGVCINSQYF-----E---GHDEVLYQLKNGETYVGQADE--ALAHE-ANLLHALGGYGLLVKDGVVQ 174 (285)
T ss_dssp TEESSCEEETTEEEECCCC-----T---TCCEEEEEETTSCEEEEEHHH--HHTTG-GGEEEEEEESCEEEETTEEC
T ss_pred CceeEEEEECCEEEecCCC-----C---CcceEEEEeeCCeEEEEecch--hhhhh-cCccEEEEcchhheECCeEc
Confidence 3444455666666654221 1 134589999999999996421 11000 00013566678888888873
No 14
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=33.97 E-value=1.7e+02 Score=24.80 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=29.6
Q ss_pred ceEEEEe-CCeEEEcccCceeccC---CCCCCeEEEEEcCCCceEEeec
Q 006032 286 PYEVIVK-DGKFFYKQSGLILDTN---VDIDSKWIFVLSTTKSLYVGKK 330 (664)
Q Consensus 286 ~YeV~Ie-dGrL~yk~sGelvDTt---~~k~~kWIFVmDtsg~LYVG~K 330 (664)
.|.+++. ||.|+.-..+.+|..+ .+.....-++|..+|+|.+-..
T Consensus 20 ~y~l~~q~DgNLvly~~~~~vW~ant~~~~~~~~~L~l~~dGnLvL~d~ 68 (105)
T 4h3o_A 20 PYHFIMQDDCNLVLYDHSTSTWASNTEIGGKSGCSAVLQSDGNFVVYDS 68 (105)
T ss_dssp TEEEEECTTSCEEEEETTEEEEECCCCCTTCCSCEEEECTTSCEEEECT
T ss_pred CEEEEECCCCeEEEEECCEEEEEecCCCCCCccEEEEEeCCccEEEECC
Confidence 5888885 8888644456666432 2222334678899999988654
No 15
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=33.94 E-value=32 Score=35.37 Aligned_cols=93 Identities=9% Similarity=0.135 Sum_probs=51.5
Q ss_pred hhcCCccCccceEEEEeCCeEEEcccCc----eeccCCC--CCCeEEEEEc--CCCceEEeeccCCcc---------ccc
Q 006032 276 IKYLGPMERKPYEVIVKDGKFFYKQSGL----ILDTNVD--IDSKWIFVLS--TTKSLYVGKKRKGTF---------QHS 338 (664)
Q Consensus 276 IkYLspeERe~YeV~IedGrL~yk~sGe----lvDTt~~--k~~kWIFVmD--tsg~LYVG~KkkG~F---------QHS 338 (664)
+-|++-.+-.-|-+-.++|+++|..... ++....+ ..+..+||.. .+|+||+-....|.- -++
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 3344444444444444578888876544 2222111 0133577774 689999976443421 122
Q ss_pred c-CC-CCCccc-------ceeeEEE--ecCeeEEecCCCCC
Q 006032 339 S-FL-AGGATT-------AAGRLVV--ESGVLKAVWPHSGH 368 (664)
Q Consensus 339 S-FL-aGg~V~-------AAG~LvV--kNG~Lk~Isp~SGH 368 (664)
| +. .|.||+ .-|.+.+ .+|.|-+|...+|-
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~ 132 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGE 132 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEEEEEEETTTCC
T ss_pred cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCc
Confidence 2 33 566777 6776666 58999998888874
No 16
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=32.87 E-value=61 Score=31.02 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCceEEeeccCCccccccCC-----CCCcccceeeEEEe--cCeeEEec
Q 006032 313 SKWIFVLSTTKSLYVGKKRKGTFQHSSFL-----AGGATTAAGRLVVE--SGVLKAVW 363 (664)
Q Consensus 313 ~kWIFVmDtsg~LYVG~KkkG~FQHSSFL-----aGg~V~AAG~LvVk--NG~Lk~Is 363 (664)
+..+||.+.+|.||+=....|.+....-+ ...++.+-|.|.|- +|.|..+.
T Consensus 318 ~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 318 NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 34588999889999887777776543323 23344555666663 56666553
No 17
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=31.68 E-value=23 Score=40.92 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhhhhhhhccCCc-----ccchhhhHHHh
Q 006032 132 EAAIKLQKVYKSFRTRRKLADC-----AVIVEQSWWKL 164 (664)
Q Consensus 132 ~AA~~iQk~Yr~yRtRR~Lad~-----av~~e~rWw~a 164 (664)
.+|++||+++|||..||+..-. |+..=|++|.+
T Consensus 780 ~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~ 817 (837)
T 1kk8_A 780 KIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRK 817 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999987542 44555666665
No 18
>3g43_E Voltage-dependent L-type calcium channel subunit alpha-1C; calmodulin-bound, coiled coil, acetylation, methylation, phosphoprotein, polymorphism; 2.10A {Homo sapiens} PDB: 3oxq_E
Probab=30.41 E-value=19 Score=31.29 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=14.6
Q ss_pred HHHHHHHhhhhhhhhhc
Q 006032 133 AAIKLQKVYKSFRTRRK 149 (664)
Q Consensus 133 AA~~iQk~Yr~yRtRR~ 149 (664)
||..||..||.||.|++
T Consensus 65 A~llI~d~~r~~k~r~~ 81 (81)
T 3g43_E 65 ATFLIQEYFRKFKKREQ 81 (81)
T ss_dssp HHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999875
No 19
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=26.74 E-value=48 Score=25.62 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=24.1
Q ss_pred hhcCCCChhHHHHHH-HHHHHHHhcCCccccc
Q 006032 199 KVGKGLSKNDRAQKL-ALQHWLEAIDPRHRYG 229 (664)
Q Consensus 199 kvGkGlSkd~kAqkL-alQhWLEaIDprHRYG 229 (664)
.-|.+.|.++-||=+ +|+|.+-+|- |+|||
T Consensus 11 ~Pg~~aspEela~Y~~~Lr~YinlvT-R~RyG 41 (41)
T 2l60_A 11 RELKKLSPEELNRYYASLRHYLNLVT-RQRYX 41 (41)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHT-TTCC-
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhc-ccccC
Confidence 347888999988865 7999999884 89998
No 20
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=26.03 E-value=20 Score=41.39 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhhhhhhhccCCcccchhhhHHHhh
Q 006032 132 EAAIKLQKVYKSFRTRRKLADCAVIVEQSWWKLL 165 (664)
Q Consensus 132 ~AA~~iQk~Yr~yRtRR~Lad~av~~e~rWw~al 165 (664)
.||++||+.+|+|..||+- -||+++
T Consensus 806 ~a~~~IQ~~~R~~~~~r~~---------~w~~l~ 830 (837)
T 1kk8_A 806 IGLSVIQRNIRKWLVLRNW---------QWWKLY 830 (837)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHcch---------HHHHHH
Confidence 4889999999999999853 488875
No 21
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=25.97 E-value=26 Score=26.53 Aligned_cols=28 Identities=36% Similarity=0.644 Sum_probs=22.2
Q ss_pred cCCCChhHHHHHH-HHHHHHHhcCCccccc
Q 006032 201 GKGLSKNDRAQKL-ALQHWLEAIDPRHRYG 229 (664)
Q Consensus 201 GkGlSkd~kAqkL-alQhWLEaIDprHRYG 229 (664)
|.+.+.++-||=+ +|+|.|-+| -|+|||
T Consensus 9 g~~a~pEela~Y~~~Lr~Yinlv-TRqRyG 37 (37)
T 1f8p_A 9 GEDAPAEDLARYYSALRHYINLI-TRQRYX 37 (37)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHH-HHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHh-cccccC
Confidence 6677888888865 799999988 488998
No 22
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=25.82 E-value=1.5e+02 Score=28.19 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=13.1
Q ss_pred cccceeeEEEe---cCeeEEecCCCCCC
Q 006032 345 ATTAAGRLVVE---SGVLKAVWPHSGHY 369 (664)
Q Consensus 345 ~V~AAG~LvVk---NG~Lk~Isp~SGHY 369 (664)
+++..|.+.|- +|.|..+.+.+|..
T Consensus 171 ~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 171 AFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp EECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred eEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 33444544442 45666666666653
No 23
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=25.82 E-value=1.2e+02 Score=26.20 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=45.4
Q ss_pred eeEEEe---cCeeEEecCCCCCCCCCHHHHHHHHHHHHH-cCCCC-CCeeeccCCcccccccccccccccccCCCchhhH
Q 006032 350 GRLVVE---SGVLKAVWPHSGHYRPTEQNFNDFISFLKE-NNVDL-TDVKMSPVDAEEASDGKQRNSMHIRNHSSDEDLV 424 (664)
Q Consensus 350 G~LvVk---NG~Lk~Isp~SGHYRPT~eNf~~Fl~fL~E-~GVDL-s~Vkv~~~~~~~~~~~~~~~s~~~r~~~s~~~~~ 424 (664)
|.|+|| +|.|..|.- |..-+|..+...+++ -++.. ..+.+.-.|||.+... ++|++++.
T Consensus 5 ~~vkvK~~~~gdi~~~~v------~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~it----------isSd~EL~ 68 (89)
T 1vd2_A 5 SQVRVKAYYRGDIMITHF------EPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDPCT----------VSSQLELE 68 (89)
T ss_dssp SCEEEEEESSSCEEEEEE------CTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCCEE----------CCSHHHHH
T ss_pred CeEEEEEEeCCeEEEEEC------CCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCccc----------ccCHHHHH
Confidence 445665 788888764 445688888888887 45443 4588888888766654 67899988
Q ss_pred Hhhch
Q 006032 425 QALDE 429 (664)
Q Consensus 425 ~~~~~ 429 (664)
++..-
T Consensus 69 eAl~l 73 (89)
T 1vd2_A 69 EAFRL 73 (89)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 24
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=25.09 E-value=28 Score=40.00 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.5
Q ss_pred hHHHHHHHHhhhhhhhhhcc
Q 006032 131 HEAAIKLQKVYKSFRTRRKL 150 (664)
Q Consensus 131 ~~AA~~iQk~Yr~yRtRR~L 150 (664)
+.+|++||+++|||..||+.
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~ 787 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKY 787 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999865
No 25
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.35 E-value=33 Score=40.57 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhhhhhhhccCCc----ccchhhhHHHh
Q 006032 132 EAAIKLQKVYKSFRTRRKLADC----AVIVEQSWWKL 164 (664)
Q Consensus 132 ~AA~~iQk~Yr~yRtRR~Lad~----av~~e~rWw~a 164 (664)
.||+.||..+|||..||++... +.+.=++||..
T Consensus 840 ~aai~IQs~~Rg~laRr~~~~lr~~~aav~IQ~~~Rg 876 (1080)
T 2dfs_A 840 DATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRG 876 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888887766532 23333555543
No 26
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=23.40 E-value=3.3e+02 Score=23.13 Aligned_cols=44 Identities=11% Similarity=0.167 Sum_probs=28.0
Q ss_pred cceEEEEe-CCeEE-EcccCceeccCC--CCCCeEEEEEcCCCceEEeec
Q 006032 285 KPYEVIVK-DGKFF-YKQSGLILDTNV--DIDSKWIFVLSTTKSLYVGKK 330 (664)
Q Consensus 285 e~YeV~Ie-dGrL~-yk~sGelvDTt~--~k~~kWIFVmDtsg~LYVG~K 330 (664)
-.|.+.+. ||.|+ |..++ +..+. .+......+|..+|+|++-..
T Consensus 20 g~~~L~~q~dGnLvl~~~~~--vW~snt~~~~~~~~l~l~~dGNLVl~~~ 67 (111)
T 3mez_A 20 ESAAFVMQGDCNLVLYNEAG--GFQSNTHGRGVDCTLRLNNRGQLEIHSA 67 (111)
T ss_dssp TTEEEEECTTSCEEEECSSC--CEECCCTTSCSSCEEEECTTSCEEEECS
T ss_pred CCEEEEEccCCeEEEECCCC--EEECCcccCCcCEEEEEcCCCcEEEEeC
Confidence 46788884 78775 55555 43321 112235778899999999754
No 27
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=21.98 E-value=48 Score=26.04 Aligned_cols=19 Identities=11% Similarity=0.123 Sum_probs=15.8
Q ss_pred hHHHHHHHHhhhhhhhhhc
Q 006032 131 HEAAIKLQKVYKSFRTRRK 149 (664)
Q Consensus 131 ~~AA~~iQk~Yr~yRtRR~ 149 (664)
.+|+..||++.|+|=.+|+
T Consensus 30 ~~A~~iIQrn~R~~~~lr~ 48 (63)
T 2bl0_A 30 SVSARIIQDNIRAYLEFKN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 4488899999999988874
No 28
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=21.48 E-value=42 Score=31.79 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=17.3
Q ss_pred hHHHHHHHHhhhhhhhhhcc
Q 006032 131 HEAAIKLQKVYKSFRTRRKL 150 (664)
Q Consensus 131 ~~AA~~iQk~Yr~yRtRR~L 150 (664)
.+|+++|||+-|+|-+||.-
T Consensus 45 ~~~~i~iQktvR~~L~rkkh 64 (148)
T 3gn4_A 45 AEACIKMQKTIRMWLCKRRH 64 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 35999999999999999764
No 29
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=20.49 E-value=3.5e+02 Score=23.01 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=29.5
Q ss_pred cceEEEEe-CCeEE-Ecc-cCceeccCC--CCCCeEEEEEcCCCceEEeec
Q 006032 285 KPYEVIVK-DGKFF-YKQ-SGLILDTNV--DIDSKWIFVLSTTKSLYVGKK 330 (664)
Q Consensus 285 e~YeV~Ie-dGrL~-yk~-sGelvDTt~--~k~~kWIFVmDtsg~LYVG~K 330 (664)
-.|.+.+. ||.|+ |.. .+..+..+. ........+|..+|+|++-..
T Consensus 24 g~~~L~~q~dGNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl~d~ 74 (113)
T 3mez_B 24 RDYSLVMRDDCNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDITDD 74 (113)
T ss_dssp TTEEEEECTTSCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEEECT
T ss_pred CCEEEEEcCCCEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEEECC
Confidence 46788884 78775 554 356665432 112335778899999999654
Done!