Query 006034
Match_columns 663
No_of_seqs 424 out of 2580
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 17:24:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006034.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006034hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03562 glutathione-regulated 100.0 1.1E-78 2.5E-83 691.0 64.8 536 1-572 22-559 (621)
2 PRK03659 glutathione-regulated 100.0 1.5E-77 3.3E-82 680.9 64.4 534 1-572 22-559 (601)
3 PRK10669 putative cation:proto 100.0 1.4E-72 3E-77 639.0 60.3 513 2-545 24-549 (558)
4 COG0475 KefB Kef-type K+ trans 100.0 9.4E-45 2E-49 392.1 41.9 357 1-382 23-385 (397)
5 PLN03159 cation/H(+) antiporte 100.0 8.8E-45 1.9E-49 423.6 41.2 363 1-384 60-443 (832)
6 COG4651 RosB Kef-type K+ trans 100.0 1.2E-42 2.7E-47 340.5 30.6 363 2-385 24-395 (408)
7 PRK05326 potassium/proton anti 100.0 1.1E-36 2.3E-41 345.5 35.3 351 2-375 24-384 (562)
8 TIGR00932 2a37 transporter, mo 100.0 1.7E-33 3.7E-38 291.8 32.4 262 2-284 10-273 (273)
9 PF00999 Na_H_Exchanger: Sodiu 100.0 8.2E-38 1.8E-42 339.7 -3.4 349 2-375 14-375 (380)
10 KOG1650 Predicted K+/H+-antipo 100.0 4.7E-31 1E-35 303.9 24.0 367 1-385 40-429 (769)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 4.6E-28 1E-32 272.4 36.9 327 2-350 32-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 5.2E-25 1.1E-29 246.9 37.6 315 2-344 16-364 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 1.3E-23 2.9E-28 229.3 38.8 324 2-347 24-369 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 8.8E-24 1.9E-28 217.7 27.4 343 2-369 25-376 (574)
15 PRK10537 voltage-gated potassi 99.9 2.6E-23 5.6E-28 223.3 27.0 132 402-545 239-370 (393)
16 COG0569 TrkA K+ transport syst 99.9 9.8E-25 2.1E-29 218.4 14.0 204 405-636 2-214 (225)
17 TIGR00840 b_cpa1 sodium/hydrog 99.9 5.2E-21 1.1E-25 214.6 34.2 322 7-345 34-378 (559)
18 PF02254 TrkA_N: TrkA-N domain 99.9 1.8E-22 3.9E-27 181.5 13.1 116 406-531 1-116 (116)
19 PRK09496 trkA potassium transp 99.8 1.9E-20 4.2E-25 208.3 15.3 202 402-634 230-439 (453)
20 PRK09496 trkA potassium transp 99.8 5.5E-19 1.2E-23 196.6 12.0 213 405-639 2-221 (453)
21 PRK14853 nhaA pH-dependent sod 99.7 4.9E-14 1.1E-18 150.5 33.7 268 32-347 62-363 (423)
22 KOG4505 Na+/H+ antiporter [Ino 99.6 2.6E-14 5.7E-19 143.3 20.6 317 8-347 38-383 (467)
23 KOG1965 Sodium/hydrogen exchan 99.6 6.1E-14 1.3E-18 152.1 21.7 327 1-343 52-413 (575)
24 COG1226 Kch Kef-type K+ transp 99.6 1.8E-13 3.9E-18 134.5 18.4 144 401-554 19-163 (212)
25 TIGR00773 NhaA Na+/H+ antiport 99.5 2.3E-11 5.1E-16 127.7 25.6 268 32-347 52-344 (373)
26 PRK14856 nhaA pH-dependent sod 99.3 9.1E-10 2E-14 117.5 23.8 267 32-347 68-398 (438)
27 PRK14854 nhaA pH-dependent sod 99.2 5.2E-09 1.1E-13 109.6 25.4 269 32-347 56-348 (383)
28 PRK09561 nhaA pH-dependent sod 99.1 1.5E-08 3.4E-13 106.5 24.0 268 32-347 59-351 (388)
29 PRK09560 nhaA pH-dependent sod 99.1 1.9E-08 4.1E-13 106.0 24.0 269 32-347 59-353 (389)
30 PRK14855 nhaA pH-dependent sod 99.1 1.5E-08 3.2E-13 108.0 23.3 264 32-347 63-383 (423)
31 PF06965 Na_H_antiport_1: Na+/ 98.9 3E-09 6.4E-14 111.8 7.8 269 31-348 54-352 (378)
32 COG3004 NhaA Na+/H+ antiporter 98.8 6.9E-07 1.5E-11 90.5 21.6 263 35-348 65-355 (390)
33 PRK06719 precorrin-2 dehydroge 98.3 9.4E-07 2E-11 83.6 7.1 82 403-501 13-94 (157)
34 KOG1966 Sodium/hydrogen exchan 98.3 4.5E-07 9.7E-12 98.9 4.3 313 8-341 68-406 (670)
35 PF05684 DUF819: Protein of un 98.2 0.0015 3.2E-08 70.6 28.8 291 7-339 24-337 (378)
36 PRK04148 hypothetical protein; 98.1 3.2E-05 7E-10 70.3 11.4 97 403-513 17-113 (134)
37 PRK12460 2-keto-3-deoxyglucona 98.0 0.0012 2.6E-08 68.2 22.1 278 12-378 16-304 (312)
38 PF03812 KdgT: 2-keto-3-deoxyg 98.0 0.0026 5.7E-08 65.4 23.4 286 10-378 14-310 (314)
39 cd01075 NAD_bind_Leu_Phe_Val_D 97.9 5E-05 1.1E-09 74.9 9.0 105 404-532 29-138 (200)
40 PRK06718 precorrin-2 dehydroge 97.9 4.8E-05 1E-09 75.1 8.5 96 403-517 10-106 (202)
41 PF00670 AdoHcyase_NAD: S-aden 97.7 6.4E-05 1.4E-09 70.5 5.8 101 403-525 23-126 (162)
42 TIGR01470 cysG_Nterm siroheme 97.4 0.00055 1.2E-08 67.7 8.7 84 403-502 9-94 (205)
43 cd05211 NAD_bind_Glu_Leu_Phe_V 97.4 0.00055 1.2E-08 68.3 8.5 113 402-533 22-150 (217)
44 PRK06522 2-dehydropantoate 2-r 97.3 0.0016 3.5E-08 68.5 11.5 106 405-522 2-111 (304)
45 PF03446 NAD_binding_2: NAD bi 97.3 0.0013 2.9E-08 62.6 9.5 110 404-532 2-120 (163)
46 TIGR00793 kdgT 2-keto-3-deoxyg 97.3 0.027 6E-07 57.7 19.0 129 244-378 177-310 (314)
47 PF13241 NAD_binding_7: Putati 97.2 0.0018 3.9E-08 56.6 8.4 90 402-515 6-95 (103)
48 TIGR02853 spore_dpaA dipicolin 97.2 0.0045 9.8E-08 64.6 12.5 123 403-544 151-282 (287)
49 COG3400 Uncharacterized protei 97.1 0.00064 1.4E-08 69.9 5.3 190 404-636 2-213 (471)
50 PRK05562 precorrin-2 dehydroge 97.0 0.0043 9.3E-08 61.8 10.3 96 402-516 24-121 (223)
51 PF13460 NAD_binding_10: NADH( 97.0 0.0025 5.4E-08 61.4 8.1 90 406-509 1-95 (183)
52 TIGR00518 alaDH alanine dehydr 97.0 0.0024 5.2E-08 69.1 8.6 100 403-513 167-269 (370)
53 COG1748 LYS9 Saccharopine dehy 97.0 0.0078 1.7E-07 64.7 12.2 113 404-530 2-122 (389)
54 CHL00194 ycf39 Ycf39; Provisio 97.0 0.004 8.6E-08 66.0 10.0 70 405-485 2-72 (317)
55 PF03435 Saccharop_dh: Sacchar 96.9 0.0043 9.4E-08 67.7 9.7 111 406-530 1-121 (386)
56 PLN02819 lysine-ketoglutarate 96.8 0.013 2.9E-07 70.5 13.4 112 402-526 568-698 (1042)
57 PF03807 F420_oxidored: NADP o 96.7 0.0061 1.3E-07 52.2 7.7 86 405-509 1-91 (96)
58 TIGR00932 2a37 transporter, mo 96.7 0.065 1.4E-06 55.5 16.7 139 228-368 6-146 (273)
59 TIGR00698 conserved hypothetic 96.7 1.2 2.5E-05 47.5 27.8 131 5-163 28-169 (335)
60 PF05368 NmrA: NmrA-like famil 96.7 0.0081 1.8E-07 60.5 9.3 88 406-504 1-96 (233)
61 TIGR00872 gnd_rel 6-phosphoglu 96.7 0.016 3.5E-07 60.9 11.7 110 405-531 2-118 (298)
62 PRK12475 thiamine/molybdopteri 96.6 0.0094 2E-07 63.6 9.8 95 402-509 23-147 (338)
63 PRK03562 glutathione-regulated 96.6 0.086 1.9E-06 61.2 18.3 113 223-335 14-127 (621)
64 PRK05476 S-adenosyl-L-homocyst 96.6 0.006 1.3E-07 66.7 8.2 101 402-523 211-313 (425)
65 PTZ00075 Adenosylhomocysteinas 96.6 0.0051 1.1E-07 67.7 7.5 102 402-524 253-356 (476)
66 PRK12490 6-phosphogluconate de 96.6 0.021 4.5E-07 60.1 11.9 109 405-529 2-117 (299)
67 TIGR00936 ahcY adenosylhomocys 96.5 0.0067 1.5E-07 65.9 8.1 82 402-504 194-275 (406)
68 PRK09599 6-phosphogluconate de 96.5 0.026 5.7E-07 59.4 12.3 111 405-531 2-119 (301)
69 PRK08306 dipicolinate synthase 96.5 0.028 6E-07 59.0 12.1 110 403-531 152-263 (296)
70 PLN00141 Tic62-NAD(P)-related 96.5 0.014 3.1E-07 59.5 9.7 75 402-486 16-94 (251)
71 PLN02494 adenosylhomocysteinas 96.5 0.007 1.5E-07 66.5 7.7 101 402-523 253-355 (477)
72 PF02558 ApbA: Ketopantoate re 96.5 0.0034 7.3E-08 58.7 4.5 107 406-523 1-113 (151)
73 COG0499 SAM1 S-adenosylhomocys 96.4 0.0074 1.6E-07 62.9 7.1 87 403-511 209-295 (420)
74 PRK12921 2-dehydropantoate 2-r 96.4 0.022 4.8E-07 59.9 11.1 106 405-522 2-113 (305)
75 PF03601 Cons_hypoth698: Conse 96.4 0.61 1.3E-05 49.0 21.4 107 5-135 23-139 (305)
76 cd01065 NAD_bind_Shikimate_DH 96.4 0.0067 1.5E-07 56.9 6.0 112 403-532 19-139 (155)
77 PRK05274 2-keto-3-deoxyglucona 96.4 0.22 4.7E-06 52.7 17.8 128 243-376 178-310 (326)
78 PF03956 DUF340: Membrane prot 96.3 0.047 1E-06 53.3 11.7 128 12-165 2-134 (191)
79 COG0385 Predicted Na+-dependen 96.3 1.8 3.8E-05 45.5 26.4 110 31-162 34-143 (319)
80 PF03601 Cons_hypoth698: Conse 96.3 0.11 2.3E-06 54.6 15.2 109 235-343 23-134 (305)
81 TIGR03649 ergot_EASG ergot alk 96.3 0.032 6.9E-07 58.0 11.4 113 406-532 2-136 (285)
82 cd00401 AdoHcyase S-adenosyl-L 96.3 0.014 3E-07 63.7 8.5 68 402-488 201-268 (413)
83 PRK03659 glutathione-regulated 96.2 0.23 5E-06 57.5 18.8 108 225-333 16-125 (601)
84 PRK10669 putative cation:proto 96.2 0.17 3.6E-06 58.2 17.5 129 223-353 15-144 (558)
85 PRK07417 arogenate dehydrogena 96.2 0.017 3.7E-07 60.1 8.5 69 405-490 2-70 (279)
86 PLN02688 pyrroline-5-carboxyla 96.2 0.042 9.1E-07 56.6 11.3 106 405-529 2-113 (266)
87 PF07991 IlvN: Acetohydroxy ac 96.1 0.01 2.2E-07 55.6 5.7 107 403-529 4-114 (165)
88 PLN03209 translocon at the inn 96.1 0.037 8E-07 62.6 11.1 74 402-486 79-168 (576)
89 TIGR02964 xanthine_xdhC xanthi 96.1 0.037 7.9E-07 56.4 10.2 112 401-525 98-212 (246)
90 PF10727 Rossmann-like: Rossma 96.1 0.0093 2E-07 54.1 5.2 106 402-525 9-120 (127)
91 COG0786 GltS Na+/glutamate sym 96.1 0.36 7.8E-06 51.4 17.4 102 228-329 233-344 (404)
92 PRK07688 thiamine/molybdopteri 96.1 0.032 7E-07 59.6 10.1 96 402-510 23-148 (339)
93 PRK09260 3-hydroxybutyryl-CoA 96.1 0.018 3.8E-07 60.3 7.9 75 404-489 2-93 (288)
94 cd05291 HicDH_like L-2-hydroxy 96.1 0.014 3.1E-07 61.5 7.2 133 405-555 2-166 (306)
95 PRK05225 ketol-acid reductoiso 96.0 0.0078 1.7E-07 65.4 4.8 81 402-501 35-121 (487)
96 COG1023 Gnd Predicted 6-phosph 96.0 0.047 1E-06 54.0 9.7 109 406-529 3-117 (300)
97 PRK00094 gpsA NAD(P)H-dependen 96.0 0.025 5.5E-07 60.0 8.7 94 405-512 3-106 (325)
98 PRK05708 2-dehydropantoate 2-r 95.9 0.078 1.7E-06 55.9 12.0 113 404-529 3-123 (305)
99 PRK10637 cysG siroheme synthas 95.9 0.038 8.3E-07 61.7 10.1 84 402-502 11-97 (457)
100 TIGR01505 tartro_sem_red 2-hyd 95.9 0.086 1.9E-06 55.1 12.1 108 405-531 1-118 (291)
101 cd05213 NAD_bind_Glutamyl_tRNA 95.8 0.03 6.4E-07 59.3 8.5 99 402-516 177-277 (311)
102 PRK11559 garR tartronate semia 95.8 0.096 2.1E-06 54.9 12.3 108 405-531 4-121 (296)
103 PRK15461 NADH-dependent gamma- 95.8 0.093 2E-06 55.1 12.0 137 405-561 3-151 (296)
104 COG0475 KefB Kef-type K+ trans 95.8 0.46 9.9E-06 52.1 17.7 113 221-334 13-130 (397)
105 PRK14106 murD UDP-N-acetylmura 95.8 0.02 4.3E-07 63.9 7.2 88 403-509 5-97 (450)
106 cd01078 NAD_bind_H4MPT_DH NADP 95.8 0.03 6.5E-07 54.8 7.6 77 403-490 28-110 (194)
107 PRK15059 tartronate semialdehy 95.7 0.072 1.6E-06 55.8 10.8 137 405-562 2-150 (292)
108 COG1648 CysG Siroheme synthase 95.7 0.047 1E-06 54.1 8.8 84 403-502 12-97 (210)
109 COG1893 ApbA Ketopantoate redu 95.7 0.063 1.4E-06 56.6 10.1 112 405-527 2-117 (307)
110 PRK08229 2-dehydropantoate 2-r 95.7 0.058 1.3E-06 57.7 10.1 103 404-522 3-118 (341)
111 PRK05993 short chain dehydroge 95.6 0.025 5.5E-07 58.5 7.0 72 403-484 4-83 (277)
112 TIGR00698 conserved hypothetic 95.6 0.36 7.7E-06 51.3 15.4 106 236-341 29-138 (335)
113 COG2084 MmsB 3-hydroxyisobutyr 95.6 0.14 3E-06 53.0 11.8 108 405-531 2-120 (286)
114 PRK08017 oxidoreductase; Provi 95.6 0.029 6.3E-07 57.0 6.9 59 404-472 3-62 (256)
115 TIGR01692 HIBADH 3-hydroxyisob 95.5 0.1 2.2E-06 54.6 11.0 105 408-531 1-115 (288)
116 PLN02256 arogenate dehydrogena 95.5 0.14 3E-06 53.9 11.9 93 401-513 34-128 (304)
117 PF01488 Shikimate_DH: Shikima 95.5 0.02 4.3E-07 52.7 4.7 75 402-490 11-88 (135)
118 PRK05326 potassium/proton anti 95.4 0.39 8.3E-06 55.2 16.2 114 224-337 16-133 (562)
119 PF01758 SBF: Sodium Bile acid 95.4 0.89 1.9E-05 44.2 16.4 28 39-66 2-29 (187)
120 PF06241 DUF1012: Protein of u 95.4 0.13 2.8E-06 48.5 9.7 133 488-636 17-154 (206)
121 PTZ00142 6-phosphogluconate de 95.4 0.16 3.5E-06 56.7 12.4 113 405-531 3-126 (470)
122 PRK07502 cyclohexadienyl dehyd 95.4 0.079 1.7E-06 55.9 9.7 71 403-489 6-78 (307)
123 KOG1370 S-adenosylhomocysteine 95.4 0.05 1.1E-06 55.5 7.5 88 403-512 214-301 (434)
124 PRK14620 NAD(P)H-dependent gly 95.3 0.063 1.4E-06 57.1 8.8 101 405-516 2-111 (326)
125 PRK06182 short chain dehydroge 95.3 0.041 8.9E-07 56.7 7.2 73 404-486 4-83 (273)
126 PRK11064 wecC UDP-N-acetyl-D-m 95.3 0.11 2.4E-06 57.2 10.9 73 404-488 4-86 (415)
127 PF03616 Glt_symporter: Sodium 95.3 5.3 0.00012 43.2 24.6 90 236-325 245-339 (368)
128 PRK13302 putative L-aspartate 95.3 0.12 2.6E-06 53.5 10.4 112 404-533 7-125 (271)
129 TIGR00210 gltS sodium--glutama 95.2 4.4 9.6E-05 44.3 22.5 91 236-327 243-338 (398)
130 PRK11880 pyrroline-5-carboxyla 95.2 0.13 2.9E-06 52.9 10.4 90 405-514 4-97 (267)
131 PF01408 GFO_IDH_MocA: Oxidore 95.2 0.16 3.5E-06 45.2 9.7 99 405-520 2-105 (120)
132 PRK13403 ketol-acid reductoiso 95.1 0.057 1.2E-06 56.6 7.4 70 402-490 15-84 (335)
133 PRK06130 3-hydroxybutyryl-CoA 95.1 0.14 3.1E-06 54.0 10.6 71 404-489 5-91 (311)
134 COG2855 Predicted membrane pro 95.1 0.37 8E-06 50.5 13.0 107 232-338 31-138 (334)
135 PRK06545 prephenate dehydrogen 95.0 0.078 1.7E-06 57.3 8.5 80 405-499 2-81 (359)
136 TIGR00873 gnd 6-phosphoglucona 95.0 0.27 5.8E-06 55.0 12.8 114 405-531 1-123 (467)
137 PRK03818 putative transporter; 95.0 0.86 1.9E-05 52.1 17.1 82 242-324 34-122 (552)
138 PLN02712 arogenate dehydrogena 95.0 0.24 5.2E-06 57.8 12.8 108 401-528 367-481 (667)
139 TIGR00465 ilvC ketol-acid redu 95.0 0.15 3.3E-06 53.9 10.2 66 404-488 4-70 (314)
140 TIGR00844 c_cpa1 na(+)/h(+) an 95.0 0.56 1.2E-05 55.0 15.4 71 267-337 74-146 (810)
141 PF03721 UDPG_MGDP_dh_N: UDP-g 94.9 0.016 3.4E-07 56.4 2.5 71 405-487 2-86 (185)
142 PRK08293 3-hydroxybutyryl-CoA 94.9 0.084 1.8E-06 55.2 8.1 40 404-453 4-43 (287)
143 PRK08507 prephenate dehydrogen 94.9 0.092 2E-06 54.5 8.3 89 405-513 2-92 (275)
144 TIGR00831 a_cpa1 Na+/H+ antipo 94.9 0.46 1E-05 54.1 14.5 114 226-339 10-124 (525)
145 PRK00048 dihydrodipicolinate r 94.9 0.22 4.8E-06 51.1 10.9 121 405-545 3-129 (257)
146 PRK15057 UDP-glucose 6-dehydro 94.9 0.28 6E-06 53.6 12.1 71 405-488 2-84 (388)
147 PRK06035 3-hydroxyacyl-CoA deh 94.8 0.063 1.4E-06 56.2 6.9 39 404-452 4-42 (291)
148 COG2855 Predicted membrane pro 94.8 6.2 0.00013 41.6 23.9 102 4-130 33-140 (334)
149 PLN03159 cation/H(+) antiporte 94.8 0.97 2.1E-05 54.3 17.6 69 225-293 54-133 (832)
150 PRK14618 NAD(P)H-dependent gly 94.8 0.08 1.7E-06 56.4 7.7 93 405-512 6-105 (328)
151 TIGR03466 HpnA hopanoid-associ 94.8 0.042 9E-07 58.0 5.4 70 405-485 2-72 (328)
152 PLN02657 3,8-divinyl protochlo 94.8 0.099 2.2E-06 57.2 8.5 73 403-485 60-144 (390)
153 PRK06953 short chain dehydroge 94.7 0.13 2.8E-06 51.2 8.6 71 405-485 3-78 (222)
154 PRK06249 2-dehydropantoate 2-r 94.7 0.28 6E-06 51.9 11.4 114 403-529 5-125 (313)
155 PRK12491 pyrroline-5-carboxyla 94.7 0.51 1.1E-05 48.9 13.0 67 404-488 3-74 (272)
156 PLN02427 UDP-apiose/xylose syn 94.6 0.073 1.6E-06 58.0 7.1 70 404-484 15-93 (386)
157 PRK06129 3-hydroxyacyl-CoA deh 94.6 0.28 6.1E-06 51.7 11.2 93 404-509 3-115 (308)
158 TIGR01915 npdG NADPH-dependent 94.6 0.11 2.5E-06 51.9 7.8 93 405-514 2-103 (219)
159 PLN00016 RNA-binding protein; 94.6 0.12 2.5E-06 56.3 8.4 91 402-504 51-158 (378)
160 PLN02350 phosphogluconate dehy 94.5 0.38 8.2E-06 54.0 12.4 116 403-531 6-132 (493)
161 PRK07819 3-hydroxybutyryl-CoA 94.5 0.14 3E-06 53.5 8.6 142 404-562 6-175 (286)
162 PRK05808 3-hydroxybutyryl-CoA 94.5 0.28 6.1E-06 51.0 10.8 37 404-450 4-40 (282)
163 COG0287 TyrA Prephenate dehydr 94.5 0.19 4.1E-06 52.2 9.3 108 403-526 3-114 (279)
164 PRK07326 short chain dehydroge 94.5 0.085 1.8E-06 52.8 6.7 73 403-485 6-90 (237)
165 PRK09291 short chain dehydroge 94.5 0.12 2.7E-06 52.4 7.9 72 404-485 3-81 (257)
166 KOG3193 K+ channel subunit [In 94.5 0.31 6.7E-06 53.1 10.9 224 402-645 286-558 (1087)
167 TIGR02356 adenyl_thiF thiazole 94.5 0.29 6.4E-06 48.3 10.3 90 402-503 20-137 (202)
168 PRK03369 murD UDP-N-acetylmura 94.4 0.088 1.9E-06 59.4 7.3 90 402-510 11-100 (488)
169 PRK07680 late competence prote 94.4 0.36 7.8E-06 50.0 11.3 98 405-522 2-106 (273)
170 PRK05479 ketol-acid reductoiso 94.4 0.17 3.6E-06 53.7 8.7 69 403-490 17-86 (330)
171 PRK08219 short chain dehydroge 94.4 0.13 2.8E-06 51.0 7.6 72 404-486 4-80 (227)
172 PLN02896 cinnamyl-alcohol dehy 94.4 0.096 2.1E-06 56.3 7.1 74 401-485 8-87 (353)
173 PRK08655 prephenate dehydrogen 94.4 0.27 5.9E-06 54.5 10.8 90 405-513 2-93 (437)
174 PF01210 NAD_Gly3P_dh_N: NAD-d 94.4 0.022 4.8E-07 53.8 1.9 71 405-490 1-82 (157)
175 cd01076 NAD_bind_1_Glu_DH NAD( 94.3 0.13 2.7E-06 51.8 7.4 111 402-533 30-159 (227)
176 PRK05884 short chain dehydroge 94.2 0.1 2.2E-06 52.2 6.6 70 405-484 2-76 (223)
177 cd01483 E1_enzyme_family Super 94.2 0.23 5.1E-06 45.9 8.5 86 405-502 1-114 (143)
178 TIGR01625 YidE_YbjL_dupl AspT/ 94.2 0.64 1.4E-05 43.7 11.4 56 7-62 20-81 (154)
179 PLN02712 arogenate dehydrogena 94.1 0.22 4.8E-06 58.1 9.9 97 399-515 48-146 (667)
180 PF13593 DUF4137: SBF-like CPA 94.1 9.2 0.0002 40.5 27.9 111 33-164 29-141 (313)
181 PF02826 2-Hacid_dh_C: D-isome 94.1 0.085 1.8E-06 51.0 5.5 84 402-504 35-120 (178)
182 PRK08264 short chain dehydroge 94.1 0.14 3E-06 51.3 7.2 73 403-486 6-82 (238)
183 PRK08644 thiamine biosynthesis 94.1 0.44 9.6E-06 47.4 10.6 88 402-501 27-141 (212)
184 PF13478 XdhC_C: XdhC Rossmann 94.0 0.033 7.1E-07 51.3 2.2 92 406-516 1-92 (136)
185 PRK07454 short chain dehydroge 94.0 0.13 2.7E-06 51.9 6.7 73 404-486 7-92 (241)
186 COG2242 CobL Precorrin-6B meth 94.0 0.44 9.6E-06 45.9 9.8 110 403-529 35-157 (187)
187 PRK07530 3-hydroxybutyryl-CoA 94.0 0.5 1.1E-05 49.4 11.4 40 404-453 5-44 (292)
188 PRK05693 short chain dehydroge 93.9 0.13 2.8E-06 53.0 6.8 73 404-486 2-81 (274)
189 PRK06101 short chain dehydroge 93.9 0.13 2.8E-06 51.9 6.7 59 405-473 3-64 (240)
190 PRK07679 pyrroline-5-carboxyla 93.9 0.48 1E-05 49.2 11.1 86 405-510 5-97 (279)
191 PRK12439 NAD(P)H-dependent gly 93.9 0.22 4.8E-06 53.4 8.7 101 403-516 7-116 (341)
192 PRK01438 murD UDP-N-acetylmura 93.9 0.14 3.1E-06 57.6 7.5 82 403-502 16-102 (480)
193 TIGR03025 EPS_sugtrans exopoly 93.9 2.6 5.6E-05 46.9 17.5 95 402-509 124-222 (445)
194 TIGR02354 thiF_fam2 thiamine b 93.9 0.46 1E-05 46.8 10.2 96 402-509 20-142 (200)
195 PLN02650 dihydroflavonol-4-red 93.8 0.096 2.1E-06 56.2 5.8 73 402-485 4-85 (351)
196 PRK07060 short chain dehydroge 93.8 0.15 3.2E-06 51.4 6.8 72 404-485 10-85 (245)
197 COG0702 Predicted nucleoside-d 93.8 0.52 1.1E-05 48.1 11.0 70 405-486 2-72 (275)
198 PRK01710 murD UDP-N-acetylmura 93.7 0.17 3.7E-06 56.6 7.8 90 403-511 14-108 (458)
199 PLN02695 GDP-D-mannose-3',5'-e 93.7 0.22 4.8E-06 54.0 8.4 73 402-485 20-93 (370)
200 TIGR03026 NDP-sugDHase nucleot 93.7 0.17 3.6E-06 55.8 7.5 40 405-454 2-41 (411)
201 TIGR01763 MalateDH_bact malate 93.6 0.41 8.9E-06 50.5 9.9 136 404-556 2-168 (305)
202 PRK06928 pyrroline-5-carboxyla 93.6 0.74 1.6E-05 47.8 11.7 102 405-524 3-111 (277)
203 PRK01581 speE spermidine synth 93.6 0.76 1.6E-05 49.2 11.7 100 401-513 149-270 (374)
204 PRK02318 mannitol-1-phosphate 93.5 0.69 1.5E-05 50.4 11.9 133 405-557 2-161 (381)
205 PRK15469 ghrA bifunctional gly 93.5 0.21 4.5E-06 52.9 7.5 83 403-505 136-220 (312)
206 PLN00106 malate dehydrogenase 93.5 0.61 1.3E-05 49.5 11.0 142 403-555 18-187 (323)
207 COG2085 Predicted dinucleotide 93.4 0.34 7.3E-06 47.6 8.1 94 405-516 3-97 (211)
208 PRK06914 short chain dehydroge 93.4 0.14 3.1E-06 52.8 6.0 73 404-486 4-90 (280)
209 PRK13304 L-aspartate dehydroge 93.3 1 2.2E-05 46.5 12.2 108 405-532 3-121 (265)
210 PRK05086 malate dehydrogenase; 93.3 0.73 1.6E-05 48.7 11.3 139 405-555 2-170 (312)
211 PRK08265 short chain dehydroge 93.3 0.17 3.6E-06 51.8 6.4 72 404-485 7-88 (261)
212 PRK11199 tyrA bifunctional cho 93.3 0.49 1.1E-05 51.4 10.2 79 402-513 97-176 (374)
213 PRK07024 short chain dehydroge 93.3 0.17 3.7E-06 51.5 6.4 72 404-485 3-86 (257)
214 PLN02545 3-hydroxybutyryl-CoA 93.2 0.66 1.4E-05 48.6 10.8 38 404-451 5-42 (295)
215 PRK15116 sulfur acceptor prote 93.2 0.64 1.4E-05 47.9 10.3 96 402-509 29-151 (268)
216 PRK02705 murD UDP-N-acetylmura 93.2 0.23 5E-06 55.5 7.7 92 405-510 2-98 (459)
217 PRK06949 short chain dehydroge 93.2 0.19 4.2E-06 50.9 6.6 74 403-486 9-95 (258)
218 PRK09072 short chain dehydroge 93.2 0.19 4.2E-06 51.3 6.5 73 404-486 6-89 (263)
219 PRK06482 short chain dehydroge 93.1 0.2 4.3E-06 51.6 6.5 72 404-485 3-84 (276)
220 PRK11908 NAD-dependent epimera 93.1 0.19 4.2E-06 53.7 6.6 68 405-482 3-73 (347)
221 PRK13243 glyoxylate reductase; 93.0 0.13 2.9E-06 54.9 5.2 83 402-504 149-233 (333)
222 PLN02989 cinnamyl-alcohol dehy 93.0 0.2 4.3E-06 53.1 6.6 72 403-485 5-85 (325)
223 PRK08267 short chain dehydroge 93.0 0.21 4.5E-06 51.0 6.4 72 404-485 2-85 (260)
224 PRK07066 3-hydroxybutyryl-CoA 93.0 0.43 9.4E-06 50.6 8.9 106 404-521 8-128 (321)
225 COG0240 GpsA Glycerol-3-phosph 92.9 0.48 1E-05 49.8 8.9 75 404-488 2-82 (329)
226 PRK06180 short chain dehydroge 92.9 0.22 4.8E-06 51.4 6.6 72 404-485 5-86 (277)
227 PRK12939 short chain dehydroge 92.9 0.2 4.4E-06 50.4 6.2 74 403-486 7-93 (250)
228 COG1064 AdhP Zn-dependent alco 92.9 0.56 1.2E-05 49.7 9.5 74 401-486 165-238 (339)
229 PRK12829 short chain dehydroge 92.9 0.23 4.9E-06 50.6 6.5 73 403-485 11-94 (264)
230 PRK07074 short chain dehydroge 92.9 0.24 5.3E-06 50.3 6.8 73 404-486 3-86 (257)
231 PTZ00325 malate dehydrogenase; 92.9 1.8 4E-05 45.9 13.4 143 403-555 8-177 (321)
232 PLN02858 fructose-bisphosphate 92.8 0.75 1.6E-05 58.1 12.1 111 402-531 323-445 (1378)
233 PLN02662 cinnamyl-alcohol dehy 92.8 0.17 3.6E-06 53.4 5.7 71 404-485 5-84 (322)
234 PRK09424 pntA NAD(P) transhydr 92.8 0.49 1.1E-05 53.2 9.4 100 402-511 164-285 (509)
235 PLN03139 formate dehydrogenase 92.8 0.29 6.3E-06 53.1 7.4 86 402-505 198-285 (386)
236 PRK07531 bifunctional 3-hydrox 92.8 0.41 8.9E-06 54.1 8.9 74 405-489 6-92 (495)
237 PRK09414 glutamate dehydrogena 92.8 0.41 8.9E-06 52.8 8.6 112 403-532 232-366 (445)
238 PRK06057 short chain dehydroge 92.7 0.29 6.3E-06 49.7 7.1 72 404-485 8-87 (255)
239 PRK07523 gluconate 5-dehydroge 92.7 0.21 4.5E-06 50.8 6.0 74 403-486 10-96 (255)
240 TIGR01318 gltD_gamma_fam gluta 92.7 0.19 4.2E-06 56.3 6.2 76 402-488 140-237 (467)
241 PLN02602 lactate dehydrogenase 92.7 1 2.2E-05 48.3 11.4 138 404-556 38-204 (350)
242 PRK10538 malonic semialdehyde 92.7 0.24 5.2E-06 50.2 6.5 71 405-485 2-82 (248)
243 PF06826 Asp-Al_Ex: Predicted 92.7 3 6.6E-05 39.8 13.4 72 4-75 19-94 (169)
244 PLN02686 cinnamoyl-CoA reducta 92.7 0.19 4.2E-06 54.4 6.0 70 402-482 52-133 (367)
245 PRK06476 pyrroline-5-carboxyla 92.7 0.88 1.9E-05 46.6 10.6 66 405-488 2-72 (258)
246 PRK07231 fabG 3-ketoacyl-(acyl 92.7 0.24 5.2E-06 50.0 6.3 73 404-486 6-90 (251)
247 PRK07067 sorbitol dehydrogenas 92.6 0.23 5E-06 50.5 6.2 72 404-485 7-88 (257)
248 PRK12828 short chain dehydroge 92.6 0.31 6.6E-06 48.6 6.9 72 404-485 8-90 (239)
249 PRK12548 shikimate 5-dehydroge 92.6 0.42 9E-06 50.0 8.1 119 403-533 126-260 (289)
250 PRK06194 hypothetical protein; 92.5 0.22 4.7E-06 51.6 5.9 72 404-485 7-91 (287)
251 PRK08177 short chain dehydroge 92.5 0.24 5.3E-06 49.3 6.1 72 404-485 2-79 (225)
252 PRK14806 bifunctional cyclohex 92.5 0.49 1.1E-05 56.3 9.6 70 404-489 4-75 (735)
253 PRK06019 phosphoribosylaminoim 92.5 0.15 3.2E-06 55.4 4.8 108 404-527 3-115 (372)
254 PRK06924 short chain dehydroge 92.5 0.26 5.6E-06 49.8 6.3 59 404-472 2-65 (251)
255 PRK06940 short chain dehydroge 92.5 0.27 5.8E-06 50.9 6.5 72 403-485 2-84 (275)
256 PRK07774 short chain dehydroge 92.5 0.25 5.5E-06 49.8 6.2 73 404-486 7-92 (250)
257 PRK12429 3-hydroxybutyrate deh 92.4 0.26 5.7E-06 49.9 6.3 72 404-485 5-89 (258)
258 TIGR01546 GAPDH-II_archae glyc 92.4 0.49 1.1E-05 50.3 8.4 70 406-488 1-86 (333)
259 TIGR03023 WcaJ_sugtrans Undeca 92.4 4.5 9.7E-05 45.1 16.7 96 402-509 127-225 (451)
260 TIGR03802 Asp_Ala_antiprt aspa 92.4 0.84 1.8E-05 52.3 10.9 69 4-76 31-99 (562)
261 smart00859 Semialdhyde_dh Semi 92.4 0.46 9.9E-06 42.6 7.1 91 405-509 1-96 (122)
262 PRK00045 hemA glutamyl-tRNA re 92.4 0.22 4.8E-06 55.1 6.0 73 402-490 181-255 (423)
263 PTZ00117 malate dehydrogenase; 92.4 0.72 1.6E-05 48.9 9.7 137 402-555 4-171 (319)
264 PRK09186 flagellin modificatio 92.3 0.29 6.4E-06 49.5 6.5 73 403-485 4-91 (256)
265 PLN02858 fructose-bisphosphate 92.3 0.9 1.9E-05 57.4 11.8 111 402-531 3-125 (1378)
266 PRK12480 D-lactate dehydrogena 92.3 0.57 1.2E-05 49.9 8.8 80 404-505 147-228 (330)
267 PLN02583 cinnamoyl-CoA reducta 92.2 0.43 9.4E-06 49.9 7.8 71 402-483 5-84 (297)
268 cd05293 LDH_1 A subgroup of L- 92.2 1.2 2.6E-05 47.1 11.1 139 402-555 2-169 (312)
269 PRK07825 short chain dehydroge 92.2 0.31 6.7E-06 50.1 6.6 72 404-485 6-86 (273)
270 PRK08339 short chain dehydroge 92.2 0.3 6.5E-06 50.1 6.5 72 404-485 9-93 (263)
271 PRK06138 short chain dehydroge 92.2 0.24 5.3E-06 50.0 5.7 73 404-486 6-90 (252)
272 PRK07634 pyrroline-5-carboxyla 92.2 1.6 3.4E-05 44.2 11.7 89 404-512 5-99 (245)
273 TIGR00832 acr3 arsenical-resis 92.2 18 0.0004 38.5 28.6 138 4-162 5-149 (328)
274 PRK08643 acetoin reductase; Va 92.2 0.29 6.2E-06 49.7 6.2 72 404-485 3-87 (256)
275 PRK03818 putative transporter; 92.1 2 4.4E-05 49.1 13.5 66 11-76 33-102 (552)
276 PRK07831 short chain dehydroge 92.1 0.31 6.6E-06 49.8 6.4 74 403-486 17-106 (262)
277 PRK08217 fabG 3-ketoacyl-(acyl 92.1 0.3 6.4E-06 49.3 6.2 74 403-486 5-91 (253)
278 TIGR03082 Gneg_AbrB_dup membra 92.1 11 0.00023 35.6 16.4 114 225-344 6-125 (156)
279 PF00056 Ldh_1_N: lactate/mala 92.1 1.4 3E-05 40.8 10.1 97 405-516 2-122 (141)
280 COG2910 Putative NADH-flavin r 92.1 0.27 5.8E-06 47.1 5.2 68 407-487 5-72 (211)
281 PRK06179 short chain dehydroge 92.1 0.22 4.8E-06 51.0 5.3 71 404-486 5-82 (270)
282 PRK00066 ldh L-lactate dehydro 92.1 1.7 3.6E-05 46.1 11.9 136 402-555 5-171 (315)
283 PRK05866 short chain dehydroge 92.0 0.32 6.9E-06 50.9 6.5 72 404-485 41-125 (293)
284 PLN02353 probable UDP-glucose 92.0 1.9 4.1E-05 48.3 12.8 70 405-486 3-87 (473)
285 PRK06483 dihydromonapterin red 92.0 0.37 8.1E-06 48.2 6.8 73 403-485 2-82 (236)
286 PRK07574 formate dehydrogenase 92.0 0.46 9.9E-06 51.7 7.7 88 403-508 192-281 (385)
287 KOG1420 Ca2+-activated K+ chan 92.0 0.25 5.4E-06 54.2 5.5 139 400-545 354-515 (1103)
288 PRK07890 short chain dehydroge 92.0 0.34 7.4E-06 49.1 6.5 73 403-485 5-90 (258)
289 PRK06200 2,3-dihydroxy-2,3-dih 92.0 0.38 8.3E-06 49.1 6.9 72 404-485 7-88 (263)
290 PRK06172 short chain dehydroge 92.0 0.32 7E-06 49.3 6.3 72 404-485 8-92 (253)
291 TIGR03589 PseB UDP-N-acetylglu 92.0 0.32 7E-06 51.6 6.5 71 404-485 5-82 (324)
292 PRK14619 NAD(P)H-dependent gly 91.9 0.96 2.1E-05 47.7 10.0 34 404-447 5-38 (308)
293 PF01113 DapB_N: Dihydrodipico 91.9 0.52 1.1E-05 42.6 6.9 102 405-526 2-115 (124)
294 COG1086 Predicted nucleoside-d 91.9 10 0.00022 42.8 17.8 74 401-487 114-187 (588)
295 PRK05867 short chain dehydroge 91.8 0.31 6.7E-06 49.5 6.0 72 404-485 10-94 (253)
296 PRK05565 fabG 3-ketoacyl-(acyl 91.8 0.3 6.5E-06 49.0 5.8 72 404-485 6-91 (247)
297 PF02737 3HCDH_N: 3-hydroxyacy 91.8 0.18 3.9E-06 48.8 4.0 39 405-453 1-39 (180)
298 PRK08309 short chain dehydroge 91.7 0.4 8.6E-06 46.3 6.3 87 405-502 2-99 (177)
299 PRK15181 Vi polysaccharide bio 91.7 0.33 7.2E-06 52.1 6.4 71 404-485 16-98 (348)
300 PRK06196 oxidoreductase; Provi 91.7 0.38 8.2E-06 50.8 6.7 72 404-485 27-107 (315)
301 PRK07814 short chain dehydroge 91.7 0.37 8.1E-06 49.3 6.5 71 404-484 11-94 (263)
302 PRK00141 murD UDP-N-acetylmura 91.7 0.45 9.7E-06 53.5 7.6 92 402-512 14-106 (473)
303 PRK05786 fabG 3-ketoacyl-(acyl 91.7 0.37 8E-06 48.2 6.3 73 404-486 6-90 (238)
304 PTZ00082 L-lactate dehydrogena 91.7 2.6 5.5E-05 44.8 12.8 136 403-555 6-177 (321)
305 TIGR03325 BphB_TodD cis-2,3-di 91.7 0.4 8.8E-06 48.9 6.6 72 404-485 6-87 (262)
306 TIGR01181 dTDP_gluc_dehyt dTDP 91.7 0.63 1.4E-05 48.6 8.3 71 405-486 1-82 (317)
307 TIGR01035 hemA glutamyl-tRNA r 91.6 0.29 6.2E-06 54.0 5.8 71 403-489 180-252 (417)
308 PRK13394 3-hydroxybutyrate deh 91.5 0.37 7.9E-06 49.0 6.2 72 404-485 8-92 (262)
309 TIGR01472 gmd GDP-mannose 4,6- 91.5 0.35 7.5E-06 51.7 6.3 70 405-484 2-85 (343)
310 COG0686 Ald Alanine dehydrogen 91.5 1 2.2E-05 46.7 8.9 121 401-533 166-301 (371)
311 PRK07102 short chain dehydroge 91.5 0.33 7.1E-06 48.9 5.7 71 405-485 3-84 (243)
312 PRK06223 malate dehydrogenase; 91.5 0.73 1.6E-05 48.5 8.5 135 404-555 3-168 (307)
313 PRK08213 gluconate 5-dehydroge 91.4 0.37 8.1E-06 49.0 6.1 73 404-486 13-98 (259)
314 COG0373 HemA Glutamyl-tRNA red 91.4 0.59 1.3E-05 50.9 7.7 72 402-489 177-250 (414)
315 PLN00203 glutamyl-tRNA reducta 91.4 0.32 7E-06 54.9 6.0 72 403-488 266-340 (519)
316 cd05292 LDH_2 A subgroup of L- 91.4 0.7 1.5E-05 48.8 8.2 134 405-556 2-166 (308)
317 PRK05875 short chain dehydroge 91.4 0.39 8.5E-06 49.4 6.2 73 403-485 7-94 (276)
318 TIGR00561 pntA NAD(P) transhyd 91.3 0.74 1.6E-05 51.7 8.6 96 403-508 164-281 (511)
319 PRK08125 bifunctional UDP-gluc 91.3 0.3 6.6E-06 57.3 6.0 72 401-482 313-387 (660)
320 TIGR00036 dapB dihydrodipicoli 91.3 0.82 1.8E-05 47.2 8.5 123 405-545 3-139 (266)
321 PRK12810 gltD glutamate syntha 91.3 0.36 7.8E-06 54.2 6.3 76 402-488 142-239 (471)
322 PRK07666 fabG 3-ketoacyl-(acyl 91.3 0.4 8.6E-06 48.1 6.1 73 403-485 7-92 (239)
323 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.3 0.52 1.1E-05 53.2 7.5 39 404-452 6-44 (503)
324 PRK06181 short chain dehydroge 91.3 0.37 8.1E-06 49.1 6.0 72 404-485 2-86 (263)
325 PRK08251 short chain dehydroge 91.3 0.4 8.7E-06 48.3 6.1 72 404-485 3-89 (248)
326 KOG0409 Predicted dehydrogenas 91.3 0.69 1.5E-05 47.7 7.6 46 402-457 34-79 (327)
327 PRK06124 gluconate 5-dehydroge 91.3 0.45 9.7E-06 48.3 6.5 73 404-486 12-97 (256)
328 PRK12809 putative oxidoreducta 91.2 0.35 7.7E-06 56.5 6.3 75 402-487 309-405 (639)
329 PLN02214 cinnamoyl-CoA reducta 91.2 0.49 1.1E-05 50.7 7.0 72 403-485 10-89 (342)
330 PLN02253 xanthoxin dehydrogena 91.2 0.44 9.5E-06 49.2 6.4 72 404-485 19-102 (280)
331 PRK05717 oxidoreductase; Valid 91.2 0.47 1E-05 48.2 6.6 72 404-485 11-92 (255)
332 PLN02477 glutamate dehydrogena 91.2 0.75 1.6E-05 50.3 8.3 109 403-532 206-333 (410)
333 PRK12367 short chain dehydroge 91.1 0.69 1.5E-05 47.0 7.6 71 404-485 15-87 (245)
334 PF01262 AlaDh_PNT_C: Alanine 91.1 0.21 4.5E-06 47.8 3.5 52 402-463 19-70 (168)
335 cd00755 YgdL_like Family of ac 91.1 1.6 3.5E-05 44.0 10.1 94 403-509 11-132 (231)
336 PF00072 Response_reg: Respons 91.1 1.6 3.4E-05 37.7 8.9 94 439-532 1-101 (112)
337 PRK12826 3-ketoacyl-(acyl-carr 91.1 0.47 1E-05 47.7 6.4 72 404-485 7-91 (251)
338 PRK00258 aroE shikimate 5-dehy 91.0 0.35 7.6E-06 50.3 5.4 127 403-543 123-255 (278)
339 PRK02472 murD UDP-N-acetylmura 91.0 0.51 1.1E-05 52.5 7.1 90 403-510 5-98 (447)
340 PLN00198 anthocyanidin reducta 91.0 0.39 8.5E-06 51.1 6.0 72 403-485 9-88 (338)
341 PRK08277 D-mannonate oxidoredu 91.0 0.41 8.8E-06 49.4 5.9 74 403-486 10-96 (278)
342 PRK07424 bifunctional sterol d 90.9 0.69 1.5E-05 50.7 7.8 70 404-484 179-252 (406)
343 PF00899 ThiF: ThiF family; I 90.9 0.76 1.6E-05 42.0 7.0 88 404-503 3-118 (135)
344 COG0025 NhaP NhaP-type Na+/H+ 90.9 11 0.00023 41.9 17.2 73 269-341 64-138 (429)
345 cd01485 E1-1_like Ubiquitin ac 90.9 1.4 3E-05 43.4 9.2 98 403-511 19-146 (198)
346 PRK08268 3-hydroxy-acyl-CoA de 90.8 1.1 2.3E-05 50.8 9.4 40 403-452 7-46 (507)
347 PRK07576 short chain dehydroge 90.8 0.5 1.1E-05 48.4 6.3 72 403-484 9-93 (264)
348 PRK07677 short chain dehydroge 90.7 0.53 1.2E-05 47.7 6.4 72 404-485 2-86 (252)
349 PRK05653 fabG 3-ketoacyl-(acyl 90.7 0.5 1.1E-05 47.2 6.1 72 404-485 6-90 (246)
350 TIGR03206 benzo_BadH 2-hydroxy 90.7 0.51 1.1E-05 47.5 6.2 73 404-486 4-89 (250)
351 COG1179 Dinucleotide-utilizing 90.6 0.49 1.1E-05 47.3 5.6 99 402-533 29-130 (263)
352 PF03616 Glt_symporter: Sodium 90.6 18 0.0004 39.2 18.3 113 267-379 65-185 (368)
353 PRK06500 short chain dehydroge 90.6 0.54 1.2E-05 47.3 6.3 72 404-485 7-88 (249)
354 PRK03612 spermidine synthase; 90.6 1.7 3.6E-05 49.5 10.8 73 401-487 296-383 (521)
355 PRK12814 putative NADPH-depend 90.5 0.41 8.9E-06 56.0 6.0 76 402-488 192-289 (652)
356 PRK07109 short chain dehydroge 90.5 0.52 1.1E-05 50.3 6.4 72 404-485 9-93 (334)
357 COG0111 SerA Phosphoglycerate 90.4 0.79 1.7E-05 48.7 7.4 83 403-505 142-227 (324)
358 PRK08340 glucose-1-dehydrogena 90.4 0.55 1.2E-05 47.9 6.1 70 405-484 2-83 (259)
359 cd02067 B12-binding B12 bindin 90.3 2.2 4.8E-05 37.9 9.4 80 454-533 25-111 (119)
360 PRK06079 enoyl-(acyl carrier p 90.3 0.66 1.4E-05 47.2 6.7 71 404-484 8-90 (252)
361 PRK06139 short chain dehydroge 90.3 0.52 1.1E-05 50.3 6.1 74 403-486 7-93 (330)
362 PRK12936 3-ketoacyl-(acyl-carr 90.3 0.85 1.8E-05 45.7 7.4 74 403-486 6-89 (245)
363 PRK12384 sorbitol-6-phosphate 90.3 0.56 1.2E-05 47.7 6.1 72 404-485 3-89 (259)
364 COG1255 Uncharacterized protei 90.2 1.9 4.1E-05 37.9 8.2 95 402-514 13-107 (129)
365 PRK07478 short chain dehydroge 90.1 0.63 1.4E-05 47.2 6.4 72 404-485 7-91 (254)
366 PRK00421 murC UDP-N-acetylmura 90.1 0.62 1.3E-05 52.1 6.8 87 403-509 7-95 (461)
367 PRK07775 short chain dehydroge 90.1 0.62 1.3E-05 48.0 6.3 74 402-485 9-95 (274)
368 COG0771 MurD UDP-N-acetylmuram 90.1 0.63 1.4E-05 51.3 6.6 68 403-486 7-78 (448)
369 cd00650 LDH_MDH_like NAD-depen 90.0 0.54 1.2E-05 48.4 5.8 130 406-551 1-163 (263)
370 cd05290 LDH_3 A subgroup of L- 90.0 2.9 6.2E-05 44.1 11.2 135 405-555 1-168 (307)
371 cd01487 E1_ThiF_like E1_ThiF_l 90.0 2.8 6E-05 40.3 10.2 85 405-501 1-112 (174)
372 PRK07806 short chain dehydroge 89.9 0.67 1.4E-05 46.7 6.3 72 404-485 7-92 (248)
373 COG0300 DltE Short-chain dehyd 89.9 0.79 1.7E-05 47.0 6.7 61 402-472 5-73 (265)
374 TIGR03215 ac_ald_DH_ac acetald 89.9 2.5 5.3E-05 44.0 10.4 112 405-533 3-126 (285)
375 PRK12320 hypothetical protein; 89.9 0.91 2E-05 53.0 8.0 84 405-503 2-95 (699)
376 COG0345 ProC Pyrroline-5-carbo 89.9 3.8 8.3E-05 42.1 11.6 66 404-487 2-72 (266)
377 PRK12771 putative glutamate sy 89.9 0.46 9.9E-06 54.7 5.6 74 401-488 135-233 (564)
378 PRK00377 cbiT cobalt-precorrin 89.9 4.3 9.3E-05 39.7 11.8 94 402-510 40-144 (198)
379 PLN02928 oxidoreductase family 89.8 0.55 1.2E-05 50.4 5.8 94 402-506 158-257 (347)
380 cd01492 Aos1_SUMO Ubiquitin ac 89.8 2.6 5.7E-05 41.4 10.2 96 402-532 20-118 (197)
381 cd01339 LDH-like_MDH L-lactate 89.8 1.2 2.5E-05 46.9 8.2 132 406-554 1-163 (300)
382 PRK08762 molybdopterin biosynt 89.8 1.8 4E-05 47.0 10.0 89 402-502 134-250 (376)
383 PRK08818 prephenate dehydrogen 89.8 0.98 2.1E-05 48.8 7.6 60 402-489 3-63 (370)
384 PRK07097 gluconate 5-dehydroge 89.8 0.69 1.5E-05 47.3 6.4 72 404-485 11-95 (265)
385 cd08230 glucose_DH Glucose deh 89.8 1.3 2.9E-05 47.4 8.8 76 402-489 172-250 (355)
386 COG0786 GltS Na+/glutamate sym 89.7 22 0.00048 38.3 17.3 90 266-355 66-159 (404)
387 PRK05472 redox-sensing transcr 89.7 0.95 2.1E-05 45.0 7.1 87 402-502 83-170 (213)
388 PRK12769 putative oxidoreducta 89.7 0.38 8.2E-06 56.4 4.9 75 402-487 326-422 (654)
389 COG1063 Tdh Threonine dehydrog 89.7 1.3 2.8E-05 47.7 8.6 76 404-489 170-250 (350)
390 TIGR01963 PHB_DH 3-hydroxybuty 89.7 0.67 1.5E-05 46.8 6.1 71 405-485 3-86 (255)
391 PRK07063 short chain dehydroge 89.6 0.67 1.4E-05 47.2 6.0 72 404-485 8-94 (260)
392 PRK15182 Vi polysaccharide bio 89.5 2 4.3E-05 47.6 10.0 71 404-488 7-87 (425)
393 TIGR01832 kduD 2-deoxy-D-gluco 89.5 0.76 1.7E-05 46.3 6.4 72 404-485 6-88 (248)
394 PRK10124 putative UDP-glucose 89.5 20 0.00043 40.2 18.0 94 403-512 143-240 (463)
395 TIGR01316 gltA glutamate synth 89.5 1 2.2E-05 50.3 7.8 75 402-487 132-228 (449)
396 TIGR02415 23BDH acetoin reduct 89.5 0.67 1.5E-05 46.8 5.9 71 405-485 2-85 (254)
397 PRK00536 speE spermidine synth 89.5 3 6.5E-05 42.8 10.5 97 399-510 69-170 (262)
398 PRK04308 murD UDP-N-acetylmura 89.4 0.8 1.7E-05 51.0 6.9 83 403-502 5-91 (445)
399 TIGR02622 CDP_4_6_dhtase CDP-g 89.3 0.72 1.6E-05 49.4 6.3 72 404-485 5-83 (349)
400 TIGR01142 purT phosphoribosylg 89.3 0.43 9.4E-06 51.8 4.6 71 405-487 1-72 (380)
401 PRK01368 murD UDP-N-acetylmura 89.2 0.74 1.6E-05 51.4 6.5 87 403-509 6-92 (454)
402 PRK11749 dihydropyrimidine deh 89.2 0.73 1.6E-05 51.5 6.5 75 402-487 139-235 (457)
403 PRK05650 short chain dehydroge 89.2 0.77 1.7E-05 47.1 6.3 72 405-486 2-86 (270)
404 PRK08085 gluconate 5-dehydroge 89.2 0.73 1.6E-05 46.7 6.0 73 404-486 10-95 (254)
405 PRK08773 2-octaprenyl-3-methyl 89.2 0.38 8.3E-06 52.4 4.1 63 404-476 7-69 (392)
406 PLN02735 carbamoyl-phosphate s 89.2 0.36 7.7E-06 59.7 4.2 89 401-499 572-671 (1102)
407 PRK13940 glutamyl-tRNA reducta 89.2 0.67 1.5E-05 51.0 6.0 73 403-490 181-255 (414)
408 PRK06463 fabG 3-ketoacyl-(acyl 89.2 0.99 2.1E-05 45.8 6.9 72 404-485 8-87 (255)
409 PRK07856 short chain dehydroge 89.2 0.63 1.4E-05 47.1 5.5 70 404-485 7-83 (252)
410 PRK12742 oxidoreductase; Provi 89.1 0.95 2.1E-05 45.2 6.7 72 404-485 7-83 (237)
411 PRK02006 murD UDP-N-acetylmura 89.1 0.89 1.9E-05 51.4 7.2 92 403-512 7-105 (498)
412 PRK12549 shikimate 5-dehydroge 89.1 0.83 1.8E-05 47.6 6.4 123 403-539 127-257 (284)
413 COG0026 PurK Phosphoribosylami 89.1 0.71 1.5E-05 49.0 5.7 106 405-526 3-113 (375)
414 PRK11730 fadB multifunctional 89.1 1.9 4.1E-05 51.1 10.0 40 403-452 313-352 (715)
415 PRK07035 short chain dehydroge 89.0 0.79 1.7E-05 46.4 6.1 72 404-485 9-93 (252)
416 PRK08862 short chain dehydroge 89.0 0.87 1.9E-05 45.7 6.3 72 404-485 6-91 (227)
417 TIGR00507 aroE shikimate 5-deh 89.0 0.6 1.3E-05 48.3 5.2 114 403-533 117-238 (270)
418 PLN02366 spermidine synthase 89.0 2.5 5.4E-05 44.6 9.8 74 401-487 90-175 (308)
419 PRK07984 enoyl-(acyl carrier p 89.0 1 2.2E-05 46.3 6.8 72 404-485 7-92 (262)
420 PRK12779 putative bifunctional 88.9 0.87 1.9E-05 55.4 7.3 76 402-487 305-402 (944)
421 PRK08324 short chain dehydroge 88.9 0.71 1.5E-05 54.4 6.3 74 403-486 422-507 (681)
422 cd01080 NAD_bind_m-THF_DH_Cycl 88.9 0.97 2.1E-05 43.2 6.1 56 402-489 43-99 (168)
423 KOG1251 Serine racemase [Signa 88.9 8.9 0.00019 38.5 12.7 129 400-545 70-238 (323)
424 PRK09880 L-idonate 5-dehydroge 88.9 2 4.4E-05 45.8 9.4 75 403-489 170-247 (343)
425 TIGR01327 PGDH D-3-phosphoglyc 88.8 0.59 1.3E-05 53.2 5.4 85 402-505 137-223 (525)
426 PRK06125 short chain dehydroge 88.8 0.95 2.1E-05 46.0 6.5 72 404-485 8-89 (259)
427 cd01337 MDH_glyoxysomal_mitoch 88.8 5.7 0.00012 41.9 12.3 138 405-555 2-169 (310)
428 PRK09242 tropinone reductase; 88.8 0.8 1.7E-05 46.5 5.9 73 404-486 10-97 (257)
429 PRK07453 protochlorophyllide o 88.7 0.98 2.1E-05 47.8 6.8 72 403-484 6-90 (322)
430 PLN02968 Probable N-acetyl-gam 88.7 0.71 1.5E-05 50.2 5.7 78 402-488 37-115 (381)
431 PRK12815 carB carbamoyl phosph 88.7 0.65 1.4E-05 57.5 6.0 115 402-527 6-143 (1068)
432 PRK06436 glycerate dehydrogena 88.7 0.88 1.9E-05 47.9 6.2 84 402-508 121-206 (303)
433 PRK05865 hypothetical protein; 88.7 3.9 8.4E-05 49.0 12.2 109 405-529 2-122 (854)
434 PRK06113 7-alpha-hydroxysteroi 88.7 0.91 2E-05 46.1 6.3 72 404-485 12-96 (255)
435 PF00999 Na_H_Exchanger: Sodiu 88.7 0.08 1.7E-06 57.5 -1.7 108 228-335 10-123 (380)
436 COG0677 WecC UDP-N-acetyl-D-ma 88.6 1.3 2.9E-05 47.4 7.4 72 404-487 10-94 (436)
437 PRK07062 short chain dehydroge 88.6 0.88 1.9E-05 46.4 6.1 73 404-486 9-96 (265)
438 PRK08300 acetaldehyde dehydrog 88.6 4.9 0.00011 42.1 11.5 116 404-533 5-132 (302)
439 PF00070 Pyr_redox: Pyridine n 88.6 0.36 7.8E-06 39.8 2.6 34 405-448 1-34 (80)
440 PF00289 CPSase_L_chain: Carba 88.6 0.26 5.6E-06 43.6 1.8 87 404-500 3-97 (110)
441 PRK06197 short chain dehydroge 88.6 1.5 3.3E-05 45.9 8.0 73 403-485 16-103 (306)
442 PRK06841 short chain dehydroge 88.6 1.1 2.4E-05 45.3 6.7 74 403-486 15-98 (255)
443 COG1052 LdhA Lactate dehydroge 88.5 0.94 2E-05 48.1 6.3 87 402-508 145-233 (324)
444 PLN02986 cinnamyl-alcohol dehy 88.5 0.94 2E-05 47.8 6.4 71 404-485 6-85 (322)
445 PRK06603 enoyl-(acyl carrier p 88.5 1.2 2.5E-05 45.7 6.9 71 404-484 9-93 (260)
446 PRK00811 spermidine synthase; 88.5 3.1 6.7E-05 43.3 10.1 74 401-487 75-160 (283)
447 COG0679 Predicted permeases [G 88.5 36 0.00079 35.9 27.9 135 238-375 167-305 (311)
448 TIGR01369 CPSaseII_lrg carbamo 88.4 1.7 3.7E-05 53.7 9.4 112 401-526 552-683 (1050)
449 PRK08263 short chain dehydroge 88.4 1.1 2.4E-05 46.1 6.7 73 404-486 4-86 (275)
450 PRK04972 putative transporter; 88.3 4.9 0.00011 46.1 12.4 68 5-76 34-101 (558)
451 PRK08410 2-hydroxyacid dehydro 88.3 0.59 1.3E-05 49.4 4.7 84 402-508 144-229 (311)
452 TIGR03376 glycerol3P_DH glycer 88.3 1.9 4.2E-05 46.1 8.6 93 405-511 1-116 (342)
453 PRK08605 D-lactate dehydrogena 88.3 0.62 1.3E-05 49.7 4.8 82 403-504 146-229 (332)
454 PRK08594 enoyl-(acyl carrier p 88.3 1.1 2.4E-05 45.7 6.6 71 403-483 7-93 (257)
455 COG1004 Ugd Predicted UDP-gluc 88.3 1.2 2.7E-05 47.7 6.9 71 405-487 2-86 (414)
456 PRK13303 L-aspartate dehydroge 88.2 2.9 6.3E-05 43.1 9.6 117 405-541 3-130 (265)
457 PRK08589 short chain dehydroge 88.2 0.98 2.1E-05 46.5 6.2 70 404-484 7-89 (272)
458 PRK05597 molybdopterin biosynt 88.2 2.8 6E-05 45.2 9.8 89 402-502 27-143 (355)
459 PRK07904 short chain dehydroge 88.1 1 2.2E-05 45.9 6.2 74 402-485 7-95 (253)
460 PRK08223 hypothetical protein; 88.1 3.1 6.7E-05 43.2 9.6 98 402-533 26-126 (287)
461 TIGR02437 FadB fatty oxidation 88.1 2.3 4.9E-05 50.3 9.8 77 402-488 312-403 (714)
462 PRK06141 ornithine cyclodeamin 88.1 1.4 3E-05 46.7 7.3 90 402-509 124-217 (314)
463 PF05145 AmoA: Putative ammoni 88.0 39 0.00085 35.8 27.6 117 226-348 164-286 (318)
464 cd00300 LDH_like L-lactate deh 88.0 1.5 3.2E-05 46.2 7.4 132 406-554 1-163 (300)
465 cd05294 LDH-like_MDH_nadp A la 88.0 10 0.00022 40.1 13.7 134 405-555 2-170 (309)
466 COG0654 UbiH 2-polyprenyl-6-me 88.0 0.57 1.2E-05 51.1 4.5 58 404-475 3-60 (387)
467 KOG2304 3-hydroxyacyl-CoA dehy 87.9 0.81 1.8E-05 45.1 4.9 43 401-453 9-51 (298)
468 PRK05872 short chain dehydroge 87.9 1.4 2.9E-05 46.1 7.1 74 403-486 9-94 (296)
469 PRK07533 enoyl-(acyl carrier p 87.9 1.3 2.8E-05 45.2 6.8 71 404-484 11-95 (258)
470 TIGR00946 2a69 he Auxin Efflux 87.8 8.9 0.00019 40.6 13.4 141 2-165 176-319 (321)
471 PRK03803 murD UDP-N-acetylmura 87.8 1.3 2.9E-05 49.3 7.3 84 402-502 5-92 (448)
472 PRK04690 murD UDP-N-acetylmura 87.8 1.1 2.4E-05 50.2 6.8 87 403-509 8-98 (468)
473 PRK12833 acetyl-CoA carboxylas 87.8 0.84 1.8E-05 51.2 5.7 116 402-527 4-133 (467)
474 PLN02572 UDP-sulfoquinovose sy 87.7 1.2 2.7E-05 49.5 7.0 74 402-485 46-144 (442)
475 PF04016 DUF364: Domain of unk 87.6 0.48 1E-05 44.2 3.1 107 401-532 9-117 (147)
476 TIGR01161 purK phosphoribosyla 87.6 0.55 1.2E-05 50.5 4.0 108 405-527 1-113 (352)
477 COG0039 Mdh Malate/lactate deh 87.6 1.5 3.3E-05 46.0 7.1 137 405-556 2-168 (313)
478 PRK07577 short chain dehydroge 87.6 0.96 2.1E-05 45.0 5.5 67 404-485 4-76 (234)
479 PRK06505 enoyl-(acyl carrier p 87.6 1.4 3E-05 45.4 6.9 71 404-484 8-92 (271)
480 PRK08226 short chain dehydroge 87.6 1.2 2.5E-05 45.4 6.3 73 403-485 6-90 (263)
481 COG0169 AroE Shikimate 5-dehyd 87.5 3.2 7E-05 43.1 9.4 134 403-551 126-268 (283)
482 PRK05876 short chain dehydroge 87.5 1.1 2.4E-05 46.3 6.1 72 404-485 7-91 (275)
483 PRK09135 pteridine reductase; 87.5 1.2 2.6E-05 44.6 6.2 73 404-486 7-94 (249)
484 PRK07608 ubiquinone biosynthes 87.5 0.51 1.1E-05 51.2 3.7 37 402-448 4-40 (388)
485 COG0451 WcaG Nucleoside-diphos 87.4 0.78 1.7E-05 47.9 5.0 69 405-484 2-71 (314)
486 PRK07832 short chain dehydroge 87.4 1.3 2.8E-05 45.5 6.5 72 405-486 2-87 (272)
487 cd00704 MDH Malate dehydrogena 87.4 6.4 0.00014 41.8 11.8 139 405-554 2-174 (323)
488 PRK13581 D-3-phosphoglycerate 87.3 1.2 2.5E-05 50.8 6.6 83 402-504 139-223 (526)
489 PRK05854 short chain dehydroge 87.3 1.5 3.2E-05 46.3 7.0 71 403-483 14-99 (313)
490 PF13847 Methyltransf_31: Meth 87.3 1.2 2.6E-05 41.4 5.7 61 409-484 12-80 (152)
491 PF02310 B12-binding: B12 bind 87.3 2.1 4.5E-05 38.0 7.0 82 434-533 26-113 (121)
492 COG1087 GalE UDP-glucose 4-epi 87.3 1.1 2.3E-05 46.4 5.5 68 405-482 2-72 (329)
493 PRK05294 carB carbamoyl phosph 87.3 1.4 3E-05 54.7 7.7 115 401-526 552-683 (1066)
494 PRK04207 glyceraldehyde-3-phos 87.3 2.9 6.3E-05 44.8 9.2 69 405-488 3-89 (341)
495 TIGR03022 WbaP_sugtrans Undeca 87.2 25 0.00053 39.3 17.1 89 403-503 125-216 (456)
496 PRK05599 hypothetical protein; 87.2 1.3 2.8E-05 44.8 6.3 69 405-484 2-84 (246)
497 PRK09310 aroDE bifunctional 3- 87.2 1.1 2.4E-05 50.3 6.2 105 403-533 332-440 (477)
498 TIGR00745 apbA_panE 2-dehydrop 87.2 4.4 9.5E-05 42.0 10.4 103 414-527 2-110 (293)
499 PRK07889 enoyl-(acyl carrier p 87.1 1.4 3E-05 45.0 6.5 70 404-483 8-91 (256)
500 TIGR03366 HpnZ_proposed putati 87.1 3.1 6.6E-05 43.0 9.2 76 403-489 121-199 (280)
No 1
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1.1e-78 Score=690.97 Aligned_cols=536 Identities=33% Similarity=0.548 Sum_probs=473.9
Q ss_pred CcccccCchhHHHHHHHHHHhcc--CCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 006034 1 MIMRILCRSQILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLA 78 (663)
Q Consensus 1 ~l~~rl~lP~ivg~ilaGillGp--~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (663)
+++||+|+|+++|||++|+++|| +|++++.+.++.++|+|++++||.+|+|+|++.+|+.+|+++..+..++++++++
T Consensus 22 ~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~ 101 (621)
T PRK03562 22 PIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGL 101 (621)
T ss_pred HHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999 5778777889999999999999999999999999999999999999999999876
Q ss_pred HHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHH
Q 006034 79 FTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAV 158 (663)
Q Consensus 79 ~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~ 158 (663)
++.+ .+++| ++|..++++|.+++.||+++++++++|++.+++++||.+++++++||+++
T Consensus 102 ~~~~-------------~~~~g--------~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~ 160 (621)
T PRK03562 102 LGLF-------------CMLLG--------LRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAA 160 (621)
T ss_pred HHHH-------------HHHhC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHH
Confidence 6543 35566 68999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCC
Q 006034 159 VPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGF 238 (663)
Q Consensus 159 i~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~ 238 (663)
++++++++.+...+............++.++++++++++++|+.+++++|+.+.+.+|.+...+++++++++++++.+|+
T Consensus 161 i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~lv~~~a~la~~~Gl 240 (621)
T PRK03562 161 IPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFLVFGFGLLMEEVGL 240 (621)
T ss_pred HHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhCc
Confidence 99998887665421111111112233344444455566688999999999988888899888888888899999999999
Q ss_pred cHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 006034 239 SDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVG 318 (663)
Q Consensus 239 s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~~g 318 (663)
|+++|||+||+++++++++++++++++||+++|+|+||+++|+++|+..+..+|+.++.++++.+++|++++++.++++|
T Consensus 241 s~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~~~~g 320 (621)
T PRK03562 241 SMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLARPLG 320 (621)
T ss_pred cHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988777766666677788999999999999999
Q ss_pred CChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHHHhHHHHhhhhhhcCCcchhhhhc
Q 006034 319 LTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSEDKVEEMV 398 (663)
Q Consensus 319 ~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~~~~~~~~~l~~r~~~~~~~~~~~ 398 (663)
+++++++.+|+.|+|+|||+++++..+.+.|+++++.++.+++++++|++++|++.+++++.... +..+... ++..
T Consensus 321 ~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~~~---~~~~~~~-~~~~ 396 (621)
T PRK03562 321 VPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLEQS---RTEEARE-ADEI 396 (621)
T ss_pred CCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---Hhhhccc-cccc
Confidence 99999999999999999999999999999999999999999999999999999998876554321 1111111 1111
Q ss_pred ccCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 399 NYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 399 ~~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
++.++|++|||||++|+.+++.|+ ++|+++++||.|+++++.+++.|+++++||++|+++|+++|+++|
T Consensus 397 -~~~~~~vII~G~Gr~G~~va~~L~----------~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A 465 (621)
T PRK03562 397 -DEQQPRVIIAGFGRFGQIVGRLLL----------SSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKA 465 (621)
T ss_pred -ccccCcEEEEecChHHHHHHHHHH----------hCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcC
Confidence 234789999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHH
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLR 558 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~ 558 (663)
|.++++++||+.|..++..+|+.+|++++++|++|+++.+.++++|||+++.+..+.+.+++++++..+|.++..++...
T Consensus 466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~~~L~~lg~~~~~~~~~~ 545 (621)
T PRK03562 466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGRLVLESLGLGPYEARERA 545 (621)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccchhhh
Q 006034 559 QLVRNSMEIQAQEV 572 (663)
Q Consensus 559 ~~~~~~~~~~~~e~ 572 (663)
+.+|+.++....+.
T Consensus 546 ~~~r~~~~~~~~~~ 559 (621)
T PRK03562 546 DRFRRHNLQMVEEM 559 (621)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988775555443
No 2
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.5e-77 Score=680.89 Aligned_cols=534 Identities=34% Similarity=0.544 Sum_probs=470.7
Q ss_pred CcccccCchhHHHHHHHHHHhcc--CCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 006034 1 MIMRILCRSQILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLA 78 (663)
Q Consensus 1 ~l~~rl~lP~ivg~ilaGillGp--~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (663)
++++|+|+|+++||+++|+++|| +|++++.+.++.++++|++++||.+|+|+|++.+|+.+|+++.++..++++|+++
T Consensus 22 ~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~ 101 (601)
T PRK03659 22 PLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAV 101 (601)
T ss_pred HHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999 5788777889999999999999999999999999999999999999999999876
Q ss_pred HHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHH
Q 006034 79 FTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAV 158 (663)
Q Consensus 79 ~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~ 158 (663)
++.+ .+++| ++|..++++|++++.||+++++++++|++..+++.||++++++++||+.+
T Consensus 102 ~~~~-------------~~~~g--------~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~ 160 (601)
T PRK03659 102 LAGL-------------LMLTD--------FSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAV 160 (601)
T ss_pred HHHH-------------HHHHc--------cCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHH
Confidence 5543 23456 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhC
Q 006034 159 VPLLVILPVLESQVSES-VWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLG 237 (663)
Q Consensus 159 i~~l~i~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G 237 (663)
++++++++.+...+... .|.. ....+..++++.++++|+.+++++++.+.+.+|.++..+++++++++++++.+|
T Consensus 161 i~ll~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~vl~~a~l~~~~G 236 (601)
T PRK03659 161 IPALALVPLLAGSADEHFDWMK----IGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSALFMDALG 236 (601)
T ss_pred HHHHHHHHHHhcCCCcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhC
Confidence 99998887665432221 1221 122223334445567889999999998888889988888888888999999999
Q ss_pred CcHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 006034 238 FSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRV 317 (663)
Q Consensus 238 ~s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~~ 317 (663)
+|+++|||++|+++++++++++++++++|++++|.|+||+++|+++|+..+..+|..++.++++.+++|++++++.++++
T Consensus 237 ls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~~~ 316 (601)
T PRK03659 237 LSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLARLY 316 (601)
T ss_pred ccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999888877777777788899999999999999
Q ss_pred CCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHHHhHHH-HhhhhhhcCCcchhhh
Q 006034 318 GLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWA-ADFIDDKFGSEDKVEE 396 (663)
Q Consensus 318 g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~~~~~~-~~~l~~r~~~~~~~~~ 396 (663)
|+++++++.+|+.|+|+|||+++++..+.+.|+++++.++.++.++++|++++|++.+.+.+. .++..+....+. ++
T Consensus 317 g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~~~~~~~~~~~~~~--~~ 394 (601)
T PRK03659 317 GLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKWLARRLNGPEEEDE--KP 394 (601)
T ss_pred CCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccccccc--cc
Confidence 999999999999999999999999999999999999999999999999999999999876553 222211111000 11
Q ss_pred hcccCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCC
Q 006034 397 MVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 397 ~~~~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
..++.++|++|||||++|+.+++.|+ ++|+++++||.|+++++.+++.|.++++||++|+++|+++|++
T Consensus 395 -~~~~~~~~vII~G~Gr~G~~va~~L~----------~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~ 463 (601)
T PRK03659 395 -WVEDDKPQVIIVGFGRFGQVIGRLLM----------ANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAE 463 (601)
T ss_pred -ccccccCCEEEecCchHHHHHHHHHH----------hCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCc
Confidence 11245789999999999999999997 8999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHH
Q 006034 477 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTF 556 (663)
Q Consensus 477 ~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~ 556 (663)
+||.++++++||+.|..++.++|+.+|+.+|++|++|++|.+.++++|+|+|+.++.+++.+++++++..+|.|++.+..
T Consensus 464 ~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l~~~~L~~lg~~~~~~~~ 543 (601)
T PRK03659 464 KAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVSLGMHPHQAQR 543 (601)
T ss_pred cCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhcccccchhhh
Q 006034 557 LRQLVRNSMEIQAQEV 572 (663)
Q Consensus 557 ~~~~~~~~~~~~~~e~ 572 (663)
..+..|+.++....+.
T Consensus 544 ~~~~~r~~~~~~~~~~ 559 (601)
T PRK03659 544 AQQHFRRLDMRMLREL 559 (601)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887765555443
No 3
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.4e-72 Score=639.04 Aligned_cols=513 Identities=25% Similarity=0.352 Sum_probs=438.4
Q ss_pred cccccCchhHHHHHHHHHHhcc--CCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAF 79 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp--~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (663)
++||+|+|+++|||++|+++|| +|++++.+.++.++++|+++++|.+|+|+|++.+|+.++..+..+..+++++++.+
T Consensus 24 l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 103 (558)
T PRK10669 24 LANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLLG 103 (558)
T ss_pred HHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999 46777778899999999999999999999999999998888878888888877655
Q ss_pred HhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHH
Q 006034 80 TAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVV 159 (663)
Q Consensus 80 ~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i 159 (663)
+++ .+.+| +++..++++|++++.||+++++++++|++..+++.||++++.+++||++++
T Consensus 104 ~~~-------------~~~~~--------~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i 162 (558)
T PRK10669 104 MAL-------------SAVLG--------WSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMV 162 (558)
T ss_pred HHH-------------HHHhC--------CCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHH
Confidence 443 34566 688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhc---CCCchh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH-H
Q 006034 160 PLLVILPVLESQ---VSESVW---PMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSL-L 232 (663)
Q Consensus 160 ~~l~i~~~~~~~---~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~-l 232 (663)
+++.++..+... +..+.. ..+...+...++++++..++++++.+|+.++..+.+.+|.+...++.+++++++ .
T Consensus 163 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~l~~~l~~a~~~ 242 (558)
T PRK10669 163 LTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLSVLALALGIAFGA 242 (558)
T ss_pred HHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 888877655421 111111 111122333444444455667778888888877666778877777777776665 4
Q ss_pred HHHhCCcHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006034 233 TQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 312 (663)
Q Consensus 233 ~~~~G~s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~ 312 (663)
++.+|+|+++|||++|+++++.++++++.+...+++++|.|+||+++|+++|+..+.+++..++.++++.+++|+++++.
T Consensus 243 ~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~ 322 (558)
T PRK10669 243 VELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFF 322 (558)
T ss_pred HHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988889998888899999999999999999999998777666666677788999999999
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHHHhHHHHhhhhhhcCCcc
Q 006034 313 IGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFIDDKFGSED 392 (663)
Q Consensus 313 ~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~~~~~~~~~l~~r~~~~~ 392 (663)
.++++|+++|+++.+|+.|+|+|+++++++..+++.|+++++.|++++.++++|++++|++.++..+...+..+...+..
T Consensus 323 ~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~~~~~~~~~~~~~ 402 (558)
T PRK10669 323 LVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERYLAKTETLEEQTL 402 (558)
T ss_pred HHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998876665544332111100
Q ss_pred -h---hhhhcccCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHH
Q 006034 393 -K---VEEMVNYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA 468 (663)
Q Consensus 393 -~---~~~~~~~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~ 468 (663)
+ .++..+++.++|++|||+|++|+.+++.|+ ++|++|++||.|+++++++++++.++++||++|++
T Consensus 403 ~~~~~~~~~~~~~~~~hiiI~G~G~~G~~la~~L~----------~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~ 472 (558)
T PRK10669 403 EEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLL----------AAGIPLVVIETSRTRVDELRERGIRAVLGNAANEE 472 (558)
T ss_pred ccccccccccccccCCCEEEECCChHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHH
Confidence 0 112233456899999999999999999998 78999999999999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
+|+++|+++||.++++++||++|..++.++|+.+|+.++++|++|+++.+.++++|+|+|++|+++.++++++.+.+
T Consensus 473 ~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~~l~~ 549 (558)
T PRK10669 473 IMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLET 549 (558)
T ss_pred HHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888887766
No 4
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-45 Score=392.13 Aligned_cols=357 Identities=38% Similarity=0.549 Sum_probs=295.6
Q ss_pred CcccccCchhHHHHHHHHHHhccC--C-CcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhH-HHHHHHHHHHHHH
Q 006034 1 MIMRILCRSQILGFFFAGIVLNQL--G-IIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKF-AFGMGLTQVVLST 76 (663)
Q Consensus 1 ~l~~rl~lP~ivg~ilaGillGp~--g-lv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~-~~~~~~~~~~~~~ 76 (663)
++++|+|+|+++||+++|+++||. + ..++++.++.++|+|++++||.+|+|+|++++|+.+|+ ....+..++..++
T Consensus 23 ~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~~~~~~ 102 (397)
T COG0475 23 PLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVGLTAPF 102 (397)
T ss_pred HHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHHHHHHH
Confidence 468999999999999999999993 3 34567889999999999999999999999999999999 5655555555554
Q ss_pred HHHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHH
Q 006034 77 LAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDI 156 (663)
Q Consensus 77 ~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di 156 (663)
+++.... .. .+| +++..++++|.+++.||+++++++++|+|..+++.|+.+++++++||+
T Consensus 103 ~l~~~~~-----------~~-~~g--------~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di 162 (397)
T COG0475 103 LLGLLLL-----------LG-ILG--------LSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDI 162 (397)
T ss_pred HHHHHHH-----------HH-Hhc--------cChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 4433220 01 355 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 006034 157 AVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL 236 (663)
Q Consensus 157 ~~i~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~ 236 (663)
.++++++++..+..+++.+.... .........+.++....++|+.++++++..+.+.+|.++..++.++++.++++|.+
T Consensus 163 ~~i~lLai~~~l~~~g~~~~~~~-~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~l~~a~l~e~~ 241 (397)
T COG0475 163 AAILLLAIVPALAGGGSGSVGFI-LGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLGAAYLAELL 241 (397)
T ss_pred HHHHHHHHHHHHccCCCccHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999988876544333221 12233344444444455789999999999998899999999999999999999999
Q ss_pred CCcHHHHHHHhhhhccCCchh-hHHHhhhhchhh-hhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 006034 237 GFSDTLGAFLAGAILAETNFR-TQIEADIRPFRG-LLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIG 314 (663)
Q Consensus 237 G~s~~lgAflaGl~l~~~~~~-~~i~~~~~~~~~-~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~ 314 (663)
|+|+++|||+||+++++++++ ++++++++|+++ +|+|+||+++|+++|++.+.+++..++.++.+.++.|.+++++.+
T Consensus 242 gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~ 321 (397)
T COG0475 242 GLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAA 321 (397)
T ss_pred ChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888 799999999976 999999999999999999998888777888889999999999999
Q ss_pred hhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHHHhHHHHh
Q 006034 315 PRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAAD 382 (663)
Q Consensus 315 ~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~~~~~~~~ 382 (663)
+..|.+.+++...|+.+.++||++++.+..+.+ +.++++.+...+.+. ++.+|+.....++..+
T Consensus 322 ~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~s---mi~t~i~~~~~~~~~~ 385 (397)
T COG0475 322 RLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILS---MITTPILPLLTPILLK 385 (397)
T ss_pred HHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876 455666555554444 4444444443444333
No 5
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=8.8e-45 Score=423.57 Aligned_cols=363 Identities=21% Similarity=0.362 Sum_probs=292.2
Q ss_pred CcccccCchhHHHHHHHHHHhcc--CCCcCC----------chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHH
Q 006034 1 MIMRILCRSQILGFFFAGIVLNQ--LGIIRN----------LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68 (663)
Q Consensus 1 ~l~~rl~lP~ivg~ilaGillGp--~glv~~----------~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~ 68 (663)
+++||+|+|.++|||++|+++|| +|.++. .+.++.++++|++++||.+|+|+|++.+|+.+|+++.++
T Consensus 60 ~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia 139 (832)
T PLN03159 60 FILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIA 139 (832)
T ss_pred HHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHH
Confidence 46899999999999999999999 465431 246899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHH
Q 006034 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATL 148 (663)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l 148 (663)
+.++++|++++++++ ++++.... .......++++|++++.||+++++++|+|+|+++++.|++++
T Consensus 140 ~~~~ilpf~lg~~~~-------------~~l~~~~~--~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~GrlaL 204 (832)
T PLN03159 140 IAGMALPFCIGLAFS-------------FIFHQVSR--NVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRIAM 204 (832)
T ss_pred HHHHHHHHHHHHHHH-------------HHHhhccc--ccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHHHH
Confidence 999999998766542 12221100 001234568999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccchHHHHHHH
Q 006034 149 GILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEA-----RSSEAFVALCL 223 (663)
Q Consensus 149 ~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~e~~~~~~l 223 (663)
+.++++|++++++++++..+...+... ...+ +.++..++++++ ..++.++++.|+.+. ..++.++.+++
T Consensus 205 saavv~Dl~~~ilLav~~~l~~~~~~~-~~~l-~~~l~~~~f~~~----~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il 278 (832)
T PLN03159 205 SAALVNDMCAWILLALAIALAENDSTS-LASL-WVLLSSVAFVLF----CFYVVRPGIWWIIRRTPEGETFSEFYICLIL 278 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc-hhHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHhCcCCCCcccchhHHHH
Confidence 999999999999998876654432211 1111 122222222222 334444555554432 13466667777
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHhhhhccCCchhhHHHhhhhch-hhhhHHHHHHHhccccChhHHhhh--HHHHHHHHH
Q 006034 224 LTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPF-RGLLLGLFFVTTGSSIDIELLFRE--WPNVLALLA 300 (663)
Q Consensus 224 ~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~~~i~~~~~~~-~~~~~plFFv~vG~~l~~~~l~~~--~~~~l~~~~ 300 (663)
+++++++++++.+|+|+++|||++|+++++.++++.+.++++++ +++|+|+||+++|+++|+..+... |..++.+++
T Consensus 279 ~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv 358 (832)
T PLN03159 279 TGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVII 358 (832)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHH
Confidence 77788899999999999999999999999988889999999999 899999999999999999887543 444455566
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHH-HHHHhhhHHHHHHhHH
Q 006034 301 GLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVV-VLSMALTPLLNEIGRW 379 (663)
Q Consensus 301 ~~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~v-vlt~ii~pi~~~~~~~ 379 (663)
+.+++|++++++.++++|+|+++++.+|++|++||+++++++.++.+.|+++++.|+++++++ ++|++++|++.+++++
T Consensus 359 ~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p 438 (832)
T PLN03159 359 MASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRP 438 (832)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCH
Confidence 778899999999999999999999999999999999999999999999999999999988776 4699999999988887
Q ss_pred HHhhh
Q 006034 380 AADFI 384 (663)
Q Consensus 380 ~~~~l 384 (663)
..++.
T Consensus 439 ~rk~~ 443 (832)
T PLN03159 439 ARRLV 443 (832)
T ss_pred Hhhhc
Confidence 65543
No 6
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=340.52 Aligned_cols=363 Identities=29% Similarity=0.422 Sum_probs=317.0
Q ss_pred cccccCchhHHHHHHHHHHhccC--CCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQL--GIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAF 79 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~--glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (663)
+++|+|+|+.+||+++|+++||+ |++.++..-..++|+|++++||.+|++++++++...+..+.+.++.|+.+.....
T Consensus 24 lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl~qia~at~lg 103 (408)
T COG4651 24 LANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGALAQIALATLLG 103 (408)
T ss_pred HHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHHHHHHHHHHHH
Confidence 67899999999999999999995 8887777778999999999999999999999998777777777777776665544
Q ss_pred HhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHH
Q 006034 80 TAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVV 159 (663)
Q Consensus 80 ~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i 159 (663)
..+ ....| |++...+++|.++|.+|+.+..+.++|+++.+++.||+++|..+++|++.+
T Consensus 104 ~gL-------------~~~lg--------ws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mV 162 (408)
T COG4651 104 MGL-------------SSLLG--------WSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMV 162 (408)
T ss_pred hHH-------------HHHcC--------CCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHH
Confidence 433 45666 688899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC--C----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH-H
Q 006034 160 PLLVILPVLESQV--S----ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSL-L 232 (663)
Q Consensus 160 ~~l~i~~~~~~~~--~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~-l 232 (663)
+.+...+.+++.- . ......+.....+...++.+..++++.+.||+++++....++|.+...++.++++.++ .
T Consensus 163 l~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~vla~ALgVa~Ga 242 (408)
T COG4651 163 LALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGVAFGA 242 (408)
T ss_pred HHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhhcc
Confidence 9998888776531 1 1122333445557777888888889999999999999999999999888888887665 7
Q ss_pred HHHhCCcHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006034 233 TQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 312 (663)
Q Consensus 233 ~~~~G~s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~ 312 (663)
++.+|+|..+|||.+||++++++.+|+..+..-|+++.|..+||+++||..|+..+.+++..++..++..+.+|-+..+.
T Consensus 243 ~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~aaf~ 322 (408)
T COG4651 243 AELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSVAAFF 322 (408)
T ss_pred ceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999887666777778888999999999
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHHHhHHHHhhhh
Q 006034 313 IGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNEIGRWAADFID 385 (663)
Q Consensus 313 ~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~~~~~~~~~l~ 385 (663)
..+.+|.|.|+++.++..++|.|||+++++..+.+.+++++.--..++...+++++..|+.+...++..++.+
T Consensus 323 ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~~~~~e 395 (408)
T COG4651 323 IVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRYQRSAE 395 (408)
T ss_pred HHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999777778888889999999999988777655444
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.1e-36 Score=345.54 Aligned_cols=351 Identities=21% Similarity=0.199 Sum_probs=279.2
Q ss_pred cccccCchhHHHHHHHHHHhccC--CCc--CCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQL--GII--RNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 77 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~--glv--~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~ 77 (663)
+++|+++|.+++|+++|+++||. |.+ ++.+..+.++++++++++|.+|+|+|++.+|+.+++++.+++.++++|++
T Consensus 24 l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~t~~ 103 (562)
T PRK05326 24 LSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLITAG 103 (562)
T ss_pred HHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999995 433 34567899999999999999999999999999999999999999999987
Q ss_pred HHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCC-CCChhHHHHHHHHHHHHH
Q 006034 78 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDI 156 (663)
Q Consensus 78 ~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~-~~~~~g~~~l~~~~~~Di 156 (663)
+++.+ +++++| ++|..++++|+++++||++++.++++++++ ++++.++++.+++.+||.
T Consensus 104 ~~g~~------------~~~l~g--------~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~ 163 (562)
T PRK05326 104 LTGLF------------AHWLLG--------LDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDP 163 (562)
T ss_pred HHHHH------------HHHHhc--------CCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccH
Confidence 75543 245677 689999999999999999999999999995 789999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHH
Q 006034 157 AVVPLLVILPVLESQVSE-SVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQK 235 (663)
Q Consensus 157 ~~i~~l~i~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~ 235 (663)
++++++.++..+...+.. ..+..+ ..+...++..++++++.+++..+++++.. ...++.+..+++.+++.++++++.
T Consensus 164 ~ai~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~G~~~g~l~~~l~~~~~-~~~~~~~~i~~l~~~l~~~~~a~~ 241 (562)
T PRK05326 164 MAVFLTITLIELITGGETGLSWGFL-LLFLQQFGLGALIGLLGGWLLVQLLNRIA-LPAEGLYPILVLAGALLIFALTAA 241 (562)
T ss_pred HHHHHHHHHHHHHhCCCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhhHHHHHHHHHHHHHHHHHHH
Confidence 998887765544433221 222222 23333333334444455566677766552 223455566677777788889999
Q ss_pred hCCcHHHHHHHhhhhccCCc--hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHH-HHHHHHHHHHHHHHHH
Q 006034 236 LGFSDTLGAFLAGAILAETN--FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVL-ALLAGLIIIKTLIISA 312 (663)
Q Consensus 236 ~G~s~~lgAflaGl~l~~~~--~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l-~~~~~~~l~K~~~~~~ 312 (663)
+|.|+++|+|++|++++|.+ .++.+++..+.+..++.|+||+++|+.+|+..+.+.++..+ ..++..+++|++++++
T Consensus 242 lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l 321 (562)
T PRK05326 242 LGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFL 321 (562)
T ss_pred HCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999864 44566677777788999999999999999998876543333 3344567899999999
Q ss_pred HHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCch-hhHHHHHHHHHHHHhhhHHHHH
Q 006034 313 IGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPL-ELNKLLIIVVVLSMALTPLLNE 375 (663)
Q Consensus 313 ~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~-~~~~~lv~~vvlt~ii~pi~~~ 375 (663)
..+.+++++||+++++|. ++||+++++++..+.+.|..+. ..+.+++.++++|+++.+....
T Consensus 322 ~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~ 384 (562)
T PRK05326 322 SLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLP 384 (562)
T ss_pred HHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHH
Confidence 998999999999999994 8999999999999999998864 5567777888888887655443
No 8
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.7e-33 Score=291.82 Aligned_cols=262 Identities=44% Similarity=0.726 Sum_probs=219.0
Q ss_pred cccccCchhHHHHHHHHHHhcc--CCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQ--LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAF 79 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp--~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (663)
++||+|+|++++++++|+++|| +|++++.+.++.++++|+.+++|.+|+|+|++.+|+.+|++..++..++++|++..
T Consensus 10 l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 89 (273)
T TIGR00932 10 LSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVPGVLL 89 (273)
T ss_pred HHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999 47677778899999999999999999999999999999999999999999994333
Q ss_pred HhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHH
Q 006034 80 TAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVV 159 (663)
Q Consensus 80 ~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i 159 (663)
... .+++++ +++..++++|+++++||+++++++++|++..+++.|+++++++++||++++
T Consensus 90 ~~~------------~~~~~~--------~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i 149 (273)
T TIGR00932 90 GLL------------LGHLLG--------LALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVV 149 (273)
T ss_pred HHH------------HHHHHC--------CCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHH
Confidence 322 135566 688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCc
Q 006034 160 PLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFS 239 (663)
Q Consensus 160 ~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s 239 (663)
+++.+......+.+.+. ......+....++.++.+.+.+|..+++.++..+.++.|.....++.+++..+++++.+|.|
T Consensus 150 ~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~~g~s 228 (273)
T TIGR00932 150 PLLALLPLLATSASTEH-VALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADLLGLS 228 (273)
T ss_pred HHHHHHHHHhcCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99888766554322221 11122233334444444556777788887777665566777777777788888899999999
Q ss_pred HHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccC
Q 006034 240 DTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSID 284 (663)
Q Consensus 240 ~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~ 284 (663)
+++|||++|+++++.+.+++++++++++.++|.|+||+++|+++|
T Consensus 229 ~~lgaf~aGl~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 229 MALGAFLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 999999999999998778889999999999999999999999986
No 9
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=8.2e-38 Score=339.70 Aligned_cols=349 Identities=30% Similarity=0.458 Sum_probs=84.2
Q ss_pred cccccCchhHHHHHHHHHHhccC--CCcCCc-hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQL--GIIRNL-TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLA 78 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~--glv~~~-~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (663)
++||+++|++++|+++|+++||. ++++++ +..+.++++|+.+++|.+|+|+|.+.+|+.+|+.+..++.+++++++.
T Consensus 14 l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (380)
T PF00999_consen 14 LFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLLPFIL 93 (380)
T ss_dssp ----------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------------------
T ss_pred HHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeeehhhH
Confidence 58999999999999999999995 455666 889999999999999999999999999999999999999999999876
Q ss_pred HHhhhCCCCCcchhhHHHH---hhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q 006034 79 FTAFELPPNGAVGTRILEF---LFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQD 155 (663)
Q Consensus 79 ~~~~~~~~~~~~G~~~~~~---~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~D 155 (663)
.+... ++ ..| +++..++++|.++++|||+++.++++|++..+++.++++.+++++||
T Consensus 94 ~~~~~------------~~~~~~~~--------~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d 153 (380)
T PF00999_consen 94 VGFLL------------SFFLFILG--------LSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVIND 153 (380)
T ss_dssp ----------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTT
T ss_pred HHHHH------------HHhhccch--------hhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhc
Confidence 33221 21 344 68999999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHH
Q 006034 156 IAVVPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEA--RSSEAFVALCLLTVAGTSLL 232 (663)
Q Consensus 156 i~~i~~l~i~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~e~~~~~~l~~~~~~~~l 232 (663)
+++++++.++...... ...+.+... ..++. ......+..++.+++.++..++ ++++.....++.+++..+++
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (380)
T PF00999_consen 154 IIAIILLSILISLAQASGQSSLGQLL-LSFLW----IILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGL 228 (380)
T ss_dssp TTTTTTT-------------------------------------------------------------------------
T ss_pred cchhhhhhhhhhhhcccccccccchh-cchhh----hhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhccc
Confidence 9999888776555421 112222211 11212 2222223334445555555444 45666677777788888999
Q ss_pred HHHhCCcHHHHHHHhhhhccCCchhhHHHhhhhchh-hhhHHHHHHHhccccChhHHh---hhHHHHHHHHHHHHHHHHH
Q 006034 233 TQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFR-GLLLGLFFVTTGSSIDIELLF---REWPNVLALLAGLIIIKTL 308 (663)
Q Consensus 233 ~~~~G~s~~lgAflaGl~l~~~~~~~~i~~~~~~~~-~~~~plFFv~vG~~l~~~~l~---~~~~~~l~~~~~~~l~K~~ 308 (663)
+|.+|.|+.+|+|++|+++++.+.+++++++++++. +++.|+||+++|+++|++.+. ..|...+.+++..+++|++
T Consensus 229 a~~~g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~ 308 (380)
T PF00999_consen 229 AEILGLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFI 308 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhc
Confidence 999999999999999999998888888999999996 999999999999999998883 4456566666677789999
Q ss_pred HHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHH
Q 006034 309 IISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNE 375 (663)
Q Consensus 309 ~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~ 375 (663)
++++..++.|.++|++..+++.+.+||+++++++..+.+.|.++++.+.+++.++++|++++|+..+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~ 375 (380)
T PF00999_consen 309 GVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILS 375 (380)
T ss_dssp --------------HHHHTTTTSS--HHHHHHHHHHHHH----------------------------
T ss_pred eeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998877654
No 10
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.7e-31 Score=303.94 Aligned_cols=367 Identities=23% Similarity=0.344 Sum_probs=290.8
Q ss_pred CcccccCchhHHHHHHHHHHhcc--CCCc----------CCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHH
Q 006034 1 MIMRILCRSQILGFFFAGIVLNQ--LGII----------RNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMG 68 (663)
Q Consensus 1 ~l~~rl~lP~ivg~ilaGillGp--~glv----------~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~ 68 (663)
+++|++|+|.++.++++||++|| +|-. .....++.++.+|..+++|..|+|+|.+.+|+.+|++..++
T Consensus 40 ~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~ 119 (769)
T KOG1650|consen 40 ILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIA 119 (769)
T ss_pred HHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEE
Confidence 36899999999999999999999 3432 12357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccccc-c-ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHH
Q 006034 69 LTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSD-L-VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSA 146 (663)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~-~-~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~ 146 (663)
+.++++|+..+..+.. ...+...+ . .......+-..+..+.+.||.++++++|.|+++++++.|++
T Consensus 120 ~~~~~~p~~~g~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~se~Grl 187 (769)
T KOG1650|consen 120 IASVVLPFGLGFGLAF------------LLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNSELGRL 187 (769)
T ss_pred EEEeehhhHhhhhhhh------------hccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhchhhhh
Confidence 9999999876555422 11111100 0 00011225577888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cchHHHHH
Q 006034 147 TLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR-----SSEAFVAL 221 (663)
Q Consensus 147 ~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~e~~~~~ 221 (663)
++++++++|++++.++.+...+.+....+..... +.... ..+..++.-++.++++.|+.+.+ .++.+...
T Consensus 188 a~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~ 262 (769)
T KOG1650|consen 188 ALSAAVVNDVAGWILLALALAFSSELKLSPLRSV-WDLVL----VIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICV 262 (769)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHH-HHHHH----HHHHHHheeeehhhhHHHHhhcCCCCCccccceehh
Confidence 9999999999999888776666554322221111 11111 22222334456677777776653 23445556
Q ss_pred HHHHHHHHHHHHHHhC-CcHHHHHHHhhhhccCC-chhhHHHhhhhch-hhhhHHHHHHHhccccChhHHhhhHHHHHHH
Q 006034 222 CLLTVAGTSLLTQKLG-FSDTLGAFLAGAILAET-NFRTQIEADIRPF-RGLLLGLFFVTTGSSIDIELLFREWPNVLAL 298 (663)
Q Consensus 222 ~l~~~~~~~~l~~~~G-~s~~lgAflaGl~l~~~-~~~~~i~~~~~~~-~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~ 298 (663)
.+..++.++.+++.++ +++.+|||+.|+++|+. |.+..+.++++.+ .++|+|+||+..|++.|+..+.. |......
T Consensus 263 ~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~ 341 (769)
T KOG1650|consen 263 TLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK-WGALIRT 341 (769)
T ss_pred hHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH-HHHHHHH
Confidence 6666677777888888 89999999999999987 7899999999999 79999999999999999998876 6666667
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHH-hhhHHHHHHh
Q 006034 299 LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSM-ALTPLLNEIG 377 (663)
Q Consensus 299 ~~~~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~-ii~pi~~~~~ 377 (663)
+....++|++++...+.++++|+|+++.+|.+|+.+|.+++.....+.+.+.++.+.|.++++++++++ +.+|++...+
T Consensus 342 i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y 421 (769)
T KOG1650|consen 342 ILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMFLY 421 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhc
Confidence 777889999999999999999999999999999999999999999999999999999999999988855 5568888888
Q ss_pred HHHHhhhh
Q 006034 378 RWAADFID 385 (663)
Q Consensus 378 ~~~~~~l~ 385 (663)
++..++..
T Consensus 422 ~p~~~~~~ 429 (769)
T KOG1650|consen 422 DPTRKYHG 429 (769)
T ss_pred chhhhcCc
Confidence 77665544
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.97 E-value=4.6e-28 Score=272.37 Aligned_cols=327 Identities=15% Similarity=0.107 Sum_probs=246.6
Q ss_pred cccccCchhHHHHHHHHHHhccC--CCcCCc------hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQL--GIIRNL------TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVV 73 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~--glv~~~------~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~ 73 (663)
+.+|+++|..+.++++|+++||. +++++. ...-.++++++++++|.+|++++.+.+|+.|+.++.+....+.
T Consensus 32 lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~ 111 (810)
T TIGR00844 32 VKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMT 111 (810)
T ss_pred HHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHH
Confidence 45699999999999999999995 555432 2233399999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCCCCCcchhhHHHHh-hccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhh---cCCCCChhHHHHHH
Q 006034 74 LSTLAFTAFELPPNGAVGTRILEFL-FHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAE---KGELPTRFGSATLG 149 (663)
Q Consensus 74 ~~~~~~~~~~~~~~~~~G~~~~~~~-~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~---~~~~~~~~g~~~l~ 149 (663)
++++++++++ +++ .| ++|..|+++|+++++|+|+.+..+++. .+ ++.+...++.+
T Consensus 112 lT~livAL~a------------~~Li~G--------L~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ 170 (810)
T TIGR00844 112 SGWLVIALFV------------WILVPG--------LNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSC 170 (810)
T ss_pred HHHHHHHHHH------------HHHHcC--------CCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhh
Confidence 9988877652 344 45 799999999999999999988888873 33 57888999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-C-CC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHH
Q 006034 150 ILLLQDIAVVPLLVILPVLESQ-V-SE-SVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR--SSEAFVALCLL 224 (663)
Q Consensus 150 ~~~~~Di~~i~~l~i~~~~~~~-~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~e~~~~~~l~ 224 (663)
++.+||.++++++.+...+... + .. ....++...+++.+++.++++++..|+..++.++..+.. ..+.+..+.+.
T Consensus 171 ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~La 250 (810)
T TIGR00844 171 ESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFYLI 250 (810)
T ss_pred hhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 9999999998877554333321 1 11 111222344555555555556666678888888776443 44556666666
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHhhhhccCCch-hhH--HHhhhhchhhhhHHHHHHHhccccChhHHhh------hHHHH
Q 006034 225 TVAGTSLLTQKLGFSDTLGAFLAGAILAETNF-RTQ--IEADIRPFRGLLLGLFFVTTGSSIDIELLFR------EWPNV 295 (663)
Q Consensus 225 ~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~-~~~--i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~------~~~~~ 295 (663)
+++.++.+++.+|.|+++++|+||+++++... .++ .....+.+..++..++|+++|+.+.+..+.. .|..+
T Consensus 251 LAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~i 330 (810)
T TIGR00844 251 LALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLI 330 (810)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHH
Confidence 77777788899999999999999999998531 221 1222233356889999999999998877642 35555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCC
Q 006034 296 LALLAGLIIIKTLIISAIGPRV--GLTLQESVRIGLLLSQGGEFAFVVFSLANRLGV 350 (663)
Q Consensus 296 l~~~~~~~l~K~~~~~~~~~~~--g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~ 350 (663)
++.++++++.|+..+++...+. ..+++|++++|| ++|||..++.++.++.+.+.
T Consensus 331 lLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 331 ILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 5556667788887777654332 468999999999 89999999999999988765
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.95 E-value=5.2e-25 Score=246.93 Aligned_cols=315 Identities=17% Similarity=0.168 Sum_probs=222.4
Q ss_pred cccccCchhHHHHHHHHHHhccCCC---cCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQLGI---IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLA 78 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~gl---v~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (663)
+++|+|+|.+++++++|+++||.+. ++.++ +.+..+++.+++|.+|+++|++.+|++++.++.+++.++++|+++
T Consensus 16 l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vlit~~~ 93 (525)
T TIGR00831 16 TVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVVTTVV 93 (525)
T ss_pred HhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999997432 22222 344568999999999999999999999999999999999999887
Q ss_pred HHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHH
Q 006034 79 FTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAV 158 (663)
Q Consensus 79 ~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~ 158 (663)
++.+ .++++| ++|..++++|+++++|||+++.+++++.+ .+++..+++.+++.+||..+
T Consensus 94 v~~~------------~~~~~~--------l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~a 152 (525)
T TIGR00831 94 VGFS------------LNWILG--------IPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAA 152 (525)
T ss_pred HHHH------------HHHHhc--------ccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHH
Confidence 6554 234455 79999999999999999999999999977 47788899999999999999
Q ss_pred HHHHHHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhC
Q 006034 159 VPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLG 237 (663)
Q Consensus 159 i~~l~i~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G 237 (663)
++++.+......+ +..+.+... ..+....++.++++++..|+..++.++. .+.+.....+++++++..++++|.+|
T Consensus 153 lvlf~~~~~~~~~~~~~~~~~~~-~~f~~~~~~gi~vG~~~g~~~~~l~~~~--~~~~~~~~~l~l~~~~~~y~lAe~lg 229 (525)
T TIGR00831 153 LVVFAIAVAVALGKGVFDPLNAA-LDFAVVCVGGIAAGLAVGYLAYRLLRAK--IDDPLVEIALTILAPFAGFLLAERFH 229 (525)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHhC
Confidence 9998876655542 222322222 2333333333333333445555555432 22333445667777788889999999
Q ss_pred CcHHHHHHHhhhhccCCch----hhH----HHhhhhchhhhhHHHHHHHhccccChhHHhhhHH-------H--------
Q 006034 238 FSDTLGAFLAGAILAETNF----RTQ----IEADIRPFRGLLLGLFFVTTGSSIDIELLFREWP-------N-------- 294 (663)
Q Consensus 238 ~s~~lgAflaGl~l~~~~~----~~~----i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~-------~-------- 294 (663)
.|+++++|++|+++++... +++ ..+..+.+..++.+++|+.+|++++.. +.+.|. .
T Consensus 230 ~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~-~~~~~~~~~~~~~~~~~~~~~~ 308 (525)
T TIGR00831 230 FSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGT-IFSAWKEILVAPAAVILALFTN 308 (525)
T ss_pred CCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhhhHHHHHHHHHH
Confidence 9999999999999998521 122 233445556688999999999998642 211111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hh-----cCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 006034 295 VLALLAGLIIIKTLIISAIG--PR-----VGLTLQESVRIGLLLSQGGEFAFVVFSL 344 (663)
Q Consensus 295 ~l~~~~~~~l~K~~~~~~~~--~~-----~g~~~r~~~~~g~~l~~~G~~~lvla~~ 344 (663)
.+.+.......|++.++... ++ .+.++|+.+.++| .++||.++++++..
T Consensus 309 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~ 364 (525)
T TIGR00831 309 AFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALS 364 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHH
Confidence 11111223345554332211 11 2467999999999 69999999998754
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.3e-23 Score=229.29 Aligned_cols=324 Identities=22% Similarity=0.235 Sum_probs=254.2
Q ss_pred cccccCchhHHHHHHHHHHhccC--CCcCC--chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQL--GIIRN--LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 77 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~--glv~~--~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~ 77 (663)
+.+|++.|.++.+++.|++.||. ++..+ ...-+.+..+.+..++|..|+++|.+.+|++++.+..++...++++++
T Consensus 24 ~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~ 103 (429)
T COG0025 24 LAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITAL 103 (429)
T ss_pred HHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999974 33333 234445559999999999999999999999999999999999999988
Q ss_pred HHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHH
Q 006034 78 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIA 157 (663)
Q Consensus 78 ~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~ 157 (663)
..+.+ .+++++ ++++..|+++|+++++|+|+.+.+++++.+ .+++..+++.+++.+||..
T Consensus 104 ~~g~~------------~~~l~~-------~i~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~ 163 (429)
T COG0025 104 GIGLL------------AHWLLP-------GIPLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGV 163 (429)
T ss_pred HHHHH------------HHHHhC-------ChhHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhHH
Confidence 76655 234443 278999999999999999999999999976 6889999999999999999
Q ss_pred HHHHHHHHHHhhhc-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHHHHH
Q 006034 158 VVPLLVILPVLESQ-VSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR--SSEAFVALCLLTVAGTSLLTQ 234 (663)
Q Consensus 158 ~i~~l~i~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~e~~~~~~l~~~~~~~~l~~ 234 (663)
+++++.+......+ +..+ .......++....+..++++...|+..++.++..+.+ +......+.+...+..+.+++
T Consensus 164 giv~f~~~l~~~~~~~~~~-~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~~~a~ 242 (429)
T COG0025 164 GIVLFKVALAALLGTGAFS-LGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLAE 242 (429)
T ss_pred HHHHHHHHHHHHhccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999876665543 2222 2222244555555545555556677788888876642 334455667777888888999
Q ss_pred HhCCcHHHHHHHhhhhccCC------c--hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhh-HHHHHHHHHHHHHH
Q 006034 235 KLGFSDTLGAFLAGAILAET------N--FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIII 305 (663)
Q Consensus 235 ~~G~s~~lgAflaGl~l~~~------~--~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~ 305 (663)
.+|.|+.++++++|+..++. + .+.+.++..+.+..++..+.|+.+|++++...+... ++.++......+++
T Consensus 243 ~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~~~v~ 322 (429)
T COG0025 243 ALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVAVLLA 322 (429)
T ss_pred HhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999977411 1 233444455555678999999999999999888654 66677778888899
Q ss_pred HHHHHHHHHhhc------CCChHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006034 306 KTLIISAIGPRV------GLTLQESVRIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 306 K~~~~~~~~~~~------g~~~r~~~~~g~~l~~~G~~~lvla~~a~~ 347 (663)
|++.++...+.. ..+++++++++| -++||.++++++.....
T Consensus 323 R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~ 369 (429)
T COG0025 323 RPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPL 369 (429)
T ss_pred HHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchh
Confidence 999998887763 379999999999 69999999999887653
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.93 E-value=8.8e-24 Score=217.73 Aligned_cols=343 Identities=20% Similarity=0.223 Sum_probs=277.4
Q ss_pred cccccCchhHHHHHHHHHHhcc--CCC--cCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQ--LGI--IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 77 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp--~gl--v~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~ 77 (663)
++.|++.|..+-++..|++.|- .|. .++.+.-..+.++++++++|..|+..+++.+|...++++.++..++++|..
T Consensus 25 ~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~Ts~ 104 (574)
T COG3263 25 ISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLITSG 104 (574)
T ss_pred HHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3579999999999999999997 442 245677788999999999999999999999999999999999999999988
Q ss_pred HHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHH
Q 006034 78 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIA 157 (663)
Q Consensus 78 ~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~ 157 (663)
+.... ++|.++ .+|.+++++|+++.+|+.+.+..+|.+++ ++.+++.++.-++--||.+
T Consensus 105 Ltg~a------------A~~ll~--------l~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPm 163 (574)
T COG3263 105 LTGVA------------AAYLLN--------LDWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPM 163 (574)
T ss_pred HHHHH------------HHHHhc--------cHHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCce
Confidence 76655 468888 79999999999999999999999998777 5888888888888999999
Q ss_pred HHHHHH-HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 006034 158 VVPLLV-ILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL 236 (663)
Q Consensus 158 ~i~~l~-i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~ 236 (663)
++++.. ++-..+.+.+.-.|..+ ..+++..+...++++.+.++..++.++.. -.+..+..+++...+..+.+++.+
T Consensus 164 AvfLTitlieli~~get~l~~~~l-l~f~~q~glG~l~G~~gg~l~~~~Inr~n--Ld~GL~pil~la~~Ll~fs~t~ai 240 (574)
T COG3263 164 AVFLTITLIELIAGGETNLSWGFL-LGFLQQFGLGLLLGLGGGKLLLQLINRIN--LDSGLYPILALAGGLLIFSLTGAI 240 (574)
T ss_pred eeehhHHHHHHHhccccccCHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHhhc--cccchhHHHHHHHHHHHHHHHHHh
Confidence 876654 33333333222223322 33556666556666777777777777652 234555566666666777899999
Q ss_pred CCcHHHHHHHhhhhccCC--chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhh-HHHHHHHHHHHHHHHHHHHHHH
Q 006034 237 GFSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAI 313 (663)
Q Consensus 237 G~s~~lgAflaGl~l~~~--~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~K~~~~~~~ 313 (663)
|-|+.++.+++|+++.|. +.+|.+.+..+.+..+.-.+.|...|...++++++.. .+.++.-+...+++|++.+|+.
T Consensus 241 GGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~ 320 (574)
T COG3263 241 GGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLG 320 (574)
T ss_pred cCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHh
Confidence 999999999999999998 4678888999999889999999999999999999764 4555555667779999999998
Q ss_pred HhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhh-HHHHHHHHHHHHhh
Q 006034 314 GPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLEL-NKLLIIVVVLSMAL 369 (663)
Q Consensus 314 ~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~-~~~lv~~vvlt~ii 369 (663)
..-+++++||+++++| .+-||.++++++....-.|.-+..+ |.+..+++++|.++
T Consensus 321 l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlli 376 (574)
T COG3263 321 LIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLI 376 (574)
T ss_pred hcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHH
Confidence 8888999999999999 6999999999999998888766655 56666677777655
No 15
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.92 E-value=2.6e-23 Score=223.32 Aligned_cols=132 Identities=16% Similarity=0.107 Sum_probs=123.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++|++|||+|++|+.++++|+ ++|+++++||.|+ .+...+++.++++||++|+++|++||+++|+++
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~----------~~g~~vvVId~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aV 306 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLR----------QRGQAVTVIVPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAI 306 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHH----------HCCCCEEEEECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEE
Confidence 4789999999999999999997 7889999999874 355556789999999999999999999999999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
+++++||++|..+++++|+++|+++++++++|+++.++++++|+|.|++|+..+|+.+++.+..
T Consensus 307 I~~t~dD~~Nl~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~l~g 370 (393)
T PRK10537 307 LALRDNDADNAFVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLARTLNG 370 (393)
T ss_pred EEcCCChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999988876
No 16
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=9.8e-25 Score=218.42 Aligned_cols=204 Identities=20% Similarity=0.182 Sum_probs=161.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+++|+|+|++|+.+|+.|. +.|++|++||.|++++++... .+.++++||++|+++|++||+++||+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~----------~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vv 71 (225)
T COG0569 2 KIIIIGAGRVGRSVARELS----------EEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVV 71 (225)
T ss_pred EEEEECCcHHHHHHHHHHH----------hCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEE
Confidence 5899999999999999998 899999999999999998444 8899999999999999999999999999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVR 562 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~ 562 (663)
++|++|+.|+.+|..+++.+.-.+++||+++++|.+.+++.|+|.+++|+.+++.++++.+.. |...+++ +
T Consensus 72 a~t~~d~~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~-----p~~~~~~----~ 142 (225)
T COG0569 72 AATGNDEVNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVT-----PGALDVL----E 142 (225)
T ss_pred EeeCCCHHHHHHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHHHhcC-----CChheEE----e
Confidence 999999999999999988654448999999999999999999999999999999999999988 7666554 2
Q ss_pred ccc-ccchhhhcccCC-cchhcccccccchhhhhhhccCCCCCCCc-----ccccCCCCCCCCcCCCCCCceEEEeecCC
Q 006034 563 NSM-EIQAQEVLSQKD-DQEFDIMKPLQVRVADIVEAEKTIPSTSN-----DDKLSREDNTDTAGEDAKGVLYCELNGTN 635 (663)
Q Consensus 563 ~~~-~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 635 (663)
..+ +..+.+..+..+ ...++++++++ .+ .+..... ++.....|+++|++|+||++..+|...+-
T Consensus 143 ~~~~~~~~~~~~v~~~~~~~g~~L~el~------~~---~~~~~~vvai~r~~~~~~~p~g~~~l~~gD~l~v~~~~~~i 213 (225)
T COG0569 143 LAGGDAEVIEEKVAEDSPLAGKTLRELD------LR---LPYDVNVIAIKRGGNELIIPRGDTTLEAGDRLIVIGAPEAL 213 (225)
T ss_pred ecCCcceEEEEEecCCCccCCcCHHHhc------cc---CCCCcEEEEEecCCCceecCCCCCEecCCCEEEEEEcHHHH
Confidence 221 233333333222 22233333333 11 1111111 22267789999999999999999987654
Q ss_pred C
Q 006034 636 N 636 (663)
Q Consensus 636 ~ 636 (663)
+
T Consensus 214 ~ 214 (225)
T COG0569 214 R 214 (225)
T ss_pred H
Confidence 4
No 17
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.90 E-value=5.2e-21 Score=214.65 Aligned_cols=322 Identities=14% Similarity=0.119 Sum_probs=223.9
Q ss_pred CchhHHHHHHHHHHhccC--CC--cCCc-hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q 006034 7 CRSQILGFFFAGIVLNQL--GI--IRNL-TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTA 81 (663)
Q Consensus 7 ~lP~ivg~ilaGillGp~--gl--v~~~-~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 81 (663)
++|..+..++.|+++|+. +. .+.. -.-+.+-.+.+..++|.+|++++.+.++++.+.++.+++.++++++++++.
T Consensus 34 ~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~ 113 (559)
T TIGR00840 34 AVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGL 113 (559)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999973 21 2111 123556667889999999999999999999999999999999999877665
Q ss_pred hhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHH
Q 006034 82 FELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPL 161 (663)
Q Consensus 82 ~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~ 161 (663)
..+ ++.........+++|..++++|+++++|+|+.+.+++++.+ .+.+.-.++.+++.+||.+++++
T Consensus 114 ~l~------------~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVL 180 (559)
T TIGR00840 114 SLY------------GICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVL 180 (559)
T ss_pred HHH------------HHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHH
Confidence 421 11110000001258999999999999999999999999988 57888999999999999999999
Q ss_pred HHHHHHhhhcC-CCchhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 006034 162 LVILPVLESQV-SESVWPML----VKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL 236 (663)
Q Consensus 162 l~i~~~~~~~~-~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~ 236 (663)
+.++..+...+ ....+..+ ...+...+++ ++++++..++..++.++....+ .....+++++.++.++++|.+
T Consensus 181 f~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GG-iliG~v~G~l~~~l~r~~~~~~--~~e~~l~l~~~yl~Y~lAE~l 257 (559)
T TIGR00840 181 YNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGG-LLVGVVFGFLVAFITRFTHHIR--QIEPLFVFLISYLSYLFAETL 257 (559)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHh
Confidence 87766554321 11111111 1111222222 3333344456666666543222 333445666777788899999
Q ss_pred CCcHHHHHHHhhhhccCC---chhh----HHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHH
Q 006034 237 GFSDTLGAFLAGAILAET---NFRT----QIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLI 309 (663)
Q Consensus 237 G~s~~lgAflaGl~l~~~---~~~~----~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~ 309 (663)
|.|++++++++|+++++. ..++ .+....+.+..++..+.|+++|+.+......-.|..++..++..++.|++.
T Consensus 258 ~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~ll~R~l~ 337 (559)
T TIGR00840 258 HLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIYRVLG 337 (559)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999753 2222 233444555668889999999997632211113444444455667889988
Q ss_pred HHHHHhh------cCCChHHHHHHHHhhhhhhhHHHHHHHHH
Q 006034 310 ISAIGPR------VGLTLQESVRIGLLLSQGGEFAFVVFSLA 345 (663)
Q Consensus 310 ~~~~~~~------~g~~~r~~~~~g~~l~~~G~~~lvla~~a 345 (663)
++...+. .+.++++.+.++| .++||.++++++...
T Consensus 338 V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l 378 (559)
T TIGR00840 338 VRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLL 378 (559)
T ss_pred HHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhC
Confidence 8765543 3579999999999 689999999988654
No 18
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.88 E-value=1.8e-22 Score=181.47 Aligned_cols=116 Identities=36% Similarity=0.532 Sum_probs=109.9
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEc
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 485 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~ 485 (663)
|+|||+|++|+.+++.|. +.+++|+++|.|+++++.+++.++++++||++|+++|+++++++|+.+++++
T Consensus 1 vvI~G~g~~~~~i~~~L~----------~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLK----------EGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES-SHHHHHHHHHHH----------HTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEcCCHHHHHHHHHHH----------hCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 689999999999999998 6667999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcC
Q 006034 486 TDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILE 531 (663)
Q Consensus 486 ~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p 531 (663)
+||+.|+.++..+|+++|+.+++++++++++.+.++++|+|.||+|
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 9999999999999999999999999999999999999999999998
No 19
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.84 E-value=1.9e-20 Score=208.26 Aligned_cols=202 Identities=19% Similarity=0.188 Sum_probs=161.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++|++|||+|++|+.+++.|. +.|++|++||.|+++++.+++. +..+++||++|+++|+++++++||
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~----------~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~ 299 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLE----------KEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEAD 299 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCC
Confidence 4689999999999999999997 7899999999999999998874 688999999999999999999999
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQ 559 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~ 559 (663)
.++++++||+.|+.+++.+|+.+++ +++++++++++.+.++.+|+|.|++|+..++..+++.+.. +...+. ..
T Consensus 300 ~vi~~~~~~~~n~~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~~~~~-----~~~~~~-~~ 372 (453)
T PRK09496 300 AFIALTNDDEANILSSLLAKRLGAK-KVIALVNRPAYVDLVEGLGIDIAISPRQATASEILRHVRR-----GDIVAV-HS 372 (453)
T ss_pred EEEECCCCcHHHHHHHHHHHHhCCC-eEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHHHhhc-----cchhhh-hh
Confidence 9999999999999999999999876 9999999999999999999999999999999999988877 443222 11
Q ss_pred HHhcccccchhhhcccCCc-chhcccccccchhhhhhhccCCCCCCCc-----ccccCCCCCCCCcCCCCCCceEEEeec
Q 006034 560 LVRNSMEIQAQEVLSQKDD-QEFDIMKPLQVRVADIVEAEKTIPSTSN-----DDKLSREDNTDTAGEDAKGVLYCELNG 633 (663)
Q Consensus 560 ~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~d~~~~~~~~~ 633 (663)
. ..++..+.|+.++.+. ..++++.+++.+ +.... +++. ..|++++++++||++.+||.+.
T Consensus 373 ~--~~~~~~~~~~~v~~~s~~~g~~l~el~l~-----------~~~~i~~i~r~~~~-~~p~~~~~l~~gD~l~v~~~~~ 438 (453)
T PRK09496 373 L--RRGAAEAIEAVAHETSKVVGKPLKDLKLP-----------KGVLIGAIVRGGEV-IIPTGDTVIEPGDHVIVFVLDK 438 (453)
T ss_pred h--cCCcEEEEEEEeCCCChhccCCHHHcCCC-----------CCCEEEEEEECCEE-EcCCCCcEECCCCEEEEEEcCc
Confidence 1 1123455555544321 112333332211 11111 3344 5799999999999999999887
Q ss_pred C
Q 006034 634 T 634 (663)
Q Consensus 634 ~ 634 (663)
.
T Consensus 439 ~ 439 (453)
T PRK09496 439 K 439 (453)
T ss_pred c
Confidence 6
No 20
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.78 E-value=5.5e-19 Score=196.62 Aligned_cols=213 Identities=16% Similarity=0.139 Sum_probs=158.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
|++|||+|++|+.+++.|. +.|++|+++|.|+++++.+++ .+.++++||+++++.|++++++++|.+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~----------~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLS----------GENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 7999999999999999997 789999999999999999886 68899999999999999999999999999
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEecChhh---HHHH--HHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHH
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH---LLDL--KKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLR 558 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~---~~~l--~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~ 558 (663)
++++|+.|..++..+|+++|..++|++++++++ .+.+ +++|+|.|++|+..+|..+++.+.. |...+.+
T Consensus 72 ~~~~~~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l~~-----~~~~~~~- 145 (453)
T PRK09496 72 VTDSDETNMVACQIAKSLFGAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIARLIEY-----PGALDVE- 145 (453)
T ss_pred ecCChHHHHHHHHHHHHhcCCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHHHhcC-----CCceEee-
Confidence 999999999999999999999899999988876 3344 7899999999999999999988766 4332221
Q ss_pred HHHhcccccchhhhcccCCc-chhcccccccchhhhhhhccCCCCCCCcccccCCCCCCCCcCCCCCCceEEEeecCCCc
Q 006034 559 QLVRNSMEIQAQEVLSQKDD-QEFDIMKPLQVRVADIVEAEKTIPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGTNNF 637 (663)
Q Consensus 559 ~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 637 (663)
+ + .+.+..+.|+.++.+. ...+++.++..+. .+.......-..+++ ...|++++++++||++.++|.+..-+-
T Consensus 146 ~-~-~~~~~~i~e~~V~~~s~~~g~~l~~l~~~~---~~~~~~vi~i~r~~~-~~~p~~~~~l~~gD~l~v~g~~~~l~~ 219 (453)
T PRK09496 146 E-F-ADGRVQLVEVKVYEGSPLVGKPLSDLREHF---PDIDVRVVAIFRGGR-LIIPRGDTVIEAGDEVYFIGAREHIRA 219 (453)
T ss_pred e-e-cCCeEEEEEEEeCCCCccCCcCHHHhhhhc---CCCceEEEEEEECCE-EEcCCCCcEecCCCEEEEEeCHHHHHH
Confidence 1 1 1234556666555432 1122222222110 000000000001223 336899999999999999998876553
Q ss_pred cc
Q 006034 638 LD 639 (663)
Q Consensus 638 ~~ 639 (663)
+.
T Consensus 220 ~~ 221 (453)
T PRK09496 220 VM 221 (453)
T ss_pred HH
Confidence 33
No 21
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.70 E-value=4.9e-14 Score=150.48 Aligned_cols=268 Identities=22% Similarity=0.296 Sum_probs=176.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChH----HHHHhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcccccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLA----RLKALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 105 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~----~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~ 105 (663)
..+-+.+--+.+++|.+|+|++.+ ++++.+|.. ...++.++++|.++...+ +..
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~~-----------------n~~--- 121 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVAV-----------------NLA--- 121 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHHH-----------------hCC---
Confidence 345577778889999999999665 343334443 357778888887664433 210
Q ss_pred ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCC-CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 006034 106 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE-LPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKES 184 (663)
Q Consensus 106 ~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~-~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~ 184 (663)
.....--+ .+-++||.+....++...|. .++..+..+++.+++||+.++++++++. + ++-+ +..+.
T Consensus 122 ----~~~~~~GW-~Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY---t-~~i~-~~~L~--- 188 (423)
T PRK14853 122 ----GGGALRGW-AIPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY---T-SELN-LEALL--- 188 (423)
T ss_pred ----chhhhhhh-hhhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc---C-CCCC-HHHHH---
Confidence 00011111 23356889999999998764 4788888999999999999999888754 1 1112 22211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCC----------
Q 006034 185 LKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET---------- 254 (663)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~---------- 254 (663)
.....+++ .+++. +.+.++....+.+ .+.+++.+...|+|+.+|+|++|+++|..
T Consensus 189 -~a~~~~~~-----l~~l~-------~~~V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~ 253 (423)
T PRK14853 189 -LALVPLAL-----FWLLV-------QKRVRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEA 253 (423)
T ss_pred -HHHHHHHH-----HHHHH-------HcCCchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccc
Confidence 11111111 12221 1122223322222 34567799999999999999999999842
Q ss_pred --chhhHHHhhhhch-hhhhHHHH-HHHhccccCh-hHHhhhH--HHHHHHHHHHHHHHHHHHHHHHhhc----------
Q 006034 255 --NFRTQIEADIRPF-RGLLLGLF-FVTTGSSIDI-ELLFREW--PNVLALLAGLIIIKTLIISAIGPRV---------- 317 (663)
Q Consensus 255 --~~~~~i~~~~~~~-~~~~~plF-Fv~vG~~l~~-~~l~~~~--~~~l~~~~~~~l~K~~~~~~~~~~~---------- 317 (663)
+..++++++++++ ..+++|+| |+..|.++|. ..+.+.+ +..+.+++..+++|+++++..++..
T Consensus 254 ~~~p~~rle~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~ 333 (423)
T PRK14853 254 GPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDD 333 (423)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCC
Confidence 1246789999998 57999999 9999999986 4342222 3456677888999999988877642
Q ss_pred CCChHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006034 318 GLTLQESVRIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 318 g~~~r~~~~~g~~l~~~G~~~lvla~~a~~ 347 (663)
+.+|++-.-.|+.-+-.=++++.++.++++
T Consensus 334 ~~~~~~l~gv~~L~GIGFTmSlFI~~LAf~ 363 (423)
T PRK14853 334 DLTWIDVFGVALLAGIGFTVSLLIGELAFG 363 (423)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 678888888887444444677777788873
No 22
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.63 E-value=2.6e-14 Score=143.29 Aligned_cols=317 Identities=17% Similarity=0.173 Sum_probs=222.2
Q ss_pred chhHHHHHHHHHHhccC--CCcCC------chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHH
Q 006034 8 RSQILGFFFAGIVLNQL--GIIRN------LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAF 79 (663)
Q Consensus 8 lP~ivg~ilaGillGp~--glv~~------~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (663)
+...+--.+.|+++||. .++++ +.....++.+-+..-.|.++.|+.-..+.++++.++.+-+.-+...++..
T Consensus 38 lgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs 117 (467)
T KOG4505|consen 38 LGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVS 117 (467)
T ss_pred ccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456789999993 44432 23456799999999999999999999999999999988877777777666
Q ss_pred HhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCC---CCChhHHHHHHHHHHHHH
Q 006034 80 TAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGE---LPTRFGSATLGILLLQDI 156 (663)
Q Consensus 80 ~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~---~~~~~g~~~l~~~~~~Di 156 (663)
+.++ +.++. +.++.+++++++.+.+|+|.....++.+.+. .+.+...++.+++..||.
T Consensus 118 ~~fv------------y~l~p-------~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDG 178 (467)
T KOG4505|consen 118 FGFV------------YALIP-------NLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDG 178 (467)
T ss_pred HHHH------------HHHhc-------cccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCC
Confidence 6552 22332 2789999999999999999999888886554 445667778899999999
Q ss_pred HHHHHHHHHHHhh-hcCC---CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHH
Q 006034 157 AVVPLLVILPVLE-SQVS---ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEAR--SSEAFVALCLLTVAGTS 230 (663)
Q Consensus 157 ~~i~~l~i~~~~~-~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~e~~~~~~l~~~~~~~ 230 (663)
++++++.+..-+. .... .-.|. ...++.-..+..+++.+.+|+.|..+++..+++ ..|.+..+-+.+.+.++
T Consensus 179 Maipflflai~Ll~h~~~r~~~rdwv--~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~ 256 (467)
T KOG4505|consen 179 MAIPFLFLAIDLLRHKPRRKAGRDWV--CDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLALFCM 256 (467)
T ss_pred cchhHHHHHHHHHhcCchhccCCcee--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHh
Confidence 9998876543322 1111 12232 122333333334445556678888888776655 67888888888888888
Q ss_pred HHHHHhCCcHHHHHHHhhhhccCC-chhhHHH-hhhhch-hhhhHHHHHHHhccccChhHHhh------hHHHHHHHHHH
Q 006034 231 LLTQKLGFSDTLGAFLAGAILAET-NFRTQIE-ADIRPF-RGLLLGLFFVTTGSSIDIELLFR------EWPNVLALLAG 301 (663)
Q Consensus 231 ~l~~~~G~s~~lgAflaGl~l~~~-~~~~~i~-~~~~~~-~~~~~plFFv~vG~~l~~~~l~~------~~~~~l~~~~~ 301 (663)
.+.+.+|.+..+-.|.||.+++-. -++++.+ ..+..+ ..++.-.||++.|..++++++.. .|..++.-+ .
T Consensus 257 gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi-~ 335 (467)
T KOG4505|consen 257 GIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSI-T 335 (467)
T ss_pred hhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHH-H
Confidence 999999999999999999999954 2333332 233444 34677889999999999999853 255444333 3
Q ss_pred HHHHHHHH-HHHHHhhc--CCChHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006034 302 LIIIKTLI-ISAIGPRV--GLTLQESVRIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 302 ~~l~K~~~-~~~~~~~~--g~~~r~~~~~g~~l~~~G~~~lvla~~a~~ 347 (663)
.+..|-+. +++.-... =.+|||+++.|. ++|.|.-++..+.++..
T Consensus 336 iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 336 IIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred HHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence 33444333 33322221 247999999999 89999988888887753
No 23
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.60 E-value=6.1e-14 Score=152.13 Aligned_cols=327 Identities=14% Similarity=0.149 Sum_probs=211.8
Q ss_pred CcccccC---chhHHHHHHHHHHhccC------CCcC---Cchh--HHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHH
Q 006034 1 MIMRILC---RSQILGFFFAGIVLNQL------GIIR---NLTD--VKVLSEWGILFLLFEMGLELSLARLKALAKFAFG 66 (663)
Q Consensus 1 ~l~~rl~---lP~ivg~ilaGillGp~------glv~---~~~~--l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~ 66 (663)
|++++-| +|.-+.-++.|+++|-. +..+ .... -+.+-.+-+--+.|..|.+++.+.++++...+..
T Consensus 52 hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~l~k~~fF~n~~si~~ 131 (575)
T KOG1965|consen 52 HLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYSLKKKQFFRNIGSILL 131 (575)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcccceechhhhhhhhHHHHH
Confidence 3556667 89999999999999851 2222 1111 1256667777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHH
Q 006034 67 MGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSA 146 (663)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~ 146 (663)
.+..++.+++.+..+. .++++. ......+++.+++.+|+++|+|+|..+..++++.+. +...=.+
T Consensus 132 fa~~Gt~IS~~~ig~g-------------v~~~~~-~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~v-d~~Ly~L 196 (575)
T KOG1965|consen 132 FAIFGTFISAVIIGAG-------------VYLLGF-GLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGV-DPKLYTL 196 (575)
T ss_pred hhhcceeeehhHHhhH-------------HHHHhc-ccccccccHHHHHHHhhHhcccCchHHHHHHHHhCC-Ccceeee
Confidence 9998888776554433 233332 122234899999999999999999999999999984 4555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Q 006034 147 TLGILLLQDIAVVPLLVILPVLESQVSESVWPM--LVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLL 224 (663)
Q Consensus 147 ~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~ 224 (663)
+.|++++||..+++++..+..+.... .+.|.. ....++....+-..+++..+++...+.+...-++.......+.++
T Consensus 197 VFGESvLNDAvsIVlf~~i~~~~~~~-~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~~~lE~al~ll 275 (575)
T KOG1965|consen 197 VFGESVLNDAVSIVLFNTIQKFQLGS-LNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRTPSLESALMLL 275 (575)
T ss_pred eecchhccchhHHHHHHHHHHHccCC-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 88999999999999998776665432 222222 112222222222222222233333333333333444445566677
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHhhhhccCC---chh----hHHHhhhhchhhhhHHHHHHHhcc-ccChhHHhhh-HHHH
Q 006034 225 TVAGTSLLTQKLGFSDTLGAFLAGAILAET---NFR----TQIEADIRPFRGLLLGLFFVTTGS-SIDIELLFRE-WPNV 295 (663)
Q Consensus 225 ~~~~~~~l~~~~G~s~~lgAflaGl~l~~~---~~~----~~i~~~~~~~~~~~~plFFv~vG~-~l~~~~l~~~-~~~~ 295 (663)
+....++++|..|+|+++..+..|++.++. ..+ ...++.++.+.-+...+-|.++|+ .++....... ...+
T Consensus 276 ~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~~~~~fv 355 (575)
T KOG1965|consen 276 MSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVYKSLQFV 355 (575)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceeeechHHH
Confidence 778888899999999999999999999974 222 223344444556777788999995 3444443222 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC----------CChHHHHHHHHhhhhhhhHHHHHHH
Q 006034 296 LALLAGLIIIKTLIISAIGPRVG----------LTLQESVRIGLLLSQGGEFAFVVFS 343 (663)
Q Consensus 296 l~~~~~~~l~K~~~~~~~~~~~g----------~~~r~~~~~g~~l~~~G~~~lvla~ 343 (663)
....++++++|+.-++-...... .|.++-..+.|.=.-||.++++++.
T Consensus 356 ~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~ 413 (575)
T KOG1965|consen 356 FGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALAL 413 (575)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHh
Confidence 45556667888876655554432 2333334444433368888777664
No 24
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.55 E-value=1.8e-13 Score=134.49 Aligned_cols=144 Identities=33% Similarity=0.480 Sum_probs=135.0
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
...+|+++||+|++|+.+++.|. ..+.+++++|.|++.++.++..+..+++||+++.++|+++++++|+.
T Consensus 19 ~l~~~~ii~g~~~~g~~~~~~l~----------~~~~~~~vi~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~a~~~~a~~ 88 (212)
T COG1226 19 RLKRHVIIVGFGRVGQIVARALL----------ASGIPVVVIDSDEDRVELLRELGLLVVLGDATREEVLEAAGIERARA 88 (212)
T ss_pred cCCCCEEEEcCChHHHHHHHHHH----------HCCCCEEEEECCHHHHHHHHHCCCcEEEecCCCHHHHHhcChhheeE
Confidence 57899999999999999999997 67789999999999999999999999999999999999999999999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecC-hhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHH
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD-MMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~-~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
++++++++..|..++..++..+|+.+++++.++ ..+...+...|+|.++.|....+..+++.++...+......
T Consensus 89 vi~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (212)
T COG1226 89 VIVTLSDDATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSVEA 163 (212)
T ss_pred EEEecCCHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchhhh
Confidence 999999999999999999999999999999999 77889999999999999999999999999998776655433
No 25
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.46 E-value=2.3e-11 Score=127.68 Aligned_cols=268 Identities=19% Similarity=0.228 Sum_probs=167.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcc-ccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHS-RSD 104 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~-~~~ 104 (663)
..+-+.+.-+.+++|.+|+|++.+.+. +.+|.. ...++.++++|.++...+ +. .++
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~-----------------n~~~~~ 114 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAF-----------------NANDPI 114 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhhe-----------------ecCCCc
Confidence 345577777889999999999877543 333333 346777888887664433 21 122
Q ss_pred cccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 006034 105 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKES 184 (663)
Q Consensus 105 ~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~ 184 (663)
..++|....|.-++.++.. ..++.+ ..+......+++.+++||+.++++.+++. ++ +-+ +..+.
T Consensus 115 ~~~GW~IP~ATDiAFalgv------lallG~--~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t~-~i~-~~~L~--- 178 (373)
T TIGR00773 115 TREGWAIPAATDIAFALGV------MALLGK--RVPLALKIFLLALAIIDDLGAIVIIALFY---TN-DLS-MAALL--- 178 (373)
T ss_pred ccCccccccHHHHHHHHHH------HHHhcC--CCCHHHHHHHHHHHHHHHHhhHhheeeec---CC-CCC-HHHHH---
Confidence 2345666665555555443 222222 25666677888999999999988887643 11 111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCc-----hhhH
Q 006034 185 LKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-----FRTQ 259 (663)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~-----~~~~ 259 (663)
.....+. ..+++++ .+.++......+. ...++.....|+|+.+|+|++|+++|..+ ..++
T Consensus 179 -~a~~~~~-----~l~~~~~-------~~v~~~~~y~~lg--vllW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~r 243 (373)
T TIGR00773 179 -VAAVAIA-----VLAVLNR-------CGVRRLGPYMLVG--VILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKR 243 (373)
T ss_pred -HHHHHHH-----HHHHHHH-------cCCchhhHHHHHH--HHHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHH
Confidence 1111111 1122221 1223332222222 22344458999999999999999999741 2467
Q ss_pred HHhhhhch-hhhhHHHH-HHHhccccChhHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHH
Q 006034 260 IEADIRPF-RGLLLGLF-FVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESVR 326 (663)
Q Consensus 260 i~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~~ 326 (663)
+++.++|. ..+++|+| |+..|.++|...+... ++..+.+++..+++|+++++..++.. |.+|++-.-
T Consensus 244 leh~L~p~v~~lilPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~g 323 (373)
T TIGR00773 244 LEHVLHPWVAYLILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFA 323 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 88888887 46788999 9999999986554321 34456677888899999998888652 668888888
Q ss_pred HHHhhhhhhhHHHHHHHHHHH
Q 006034 327 IGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 327 ~g~~l~~~G~~~lvla~~a~~ 347 (663)
.|+.-+-.=++++.++..+++
T Consensus 324 v~~L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 324 VGVLCGIGFTMSIFIASLAFG 344 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 887444444667777777774
No 26
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.27 E-value=9.1e-10 Score=117.54 Aligned_cols=267 Identities=18% Similarity=0.204 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcccccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 105 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~ 105 (663)
...-+.+.-+.+++|.+|+|++-+.+. +.+|.. ...++.++++|.++...+ ....+.
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~-----------------n~~~~~ 130 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFL-----------------NADTPS 130 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhhe-----------------ecCCCc
Confidence 345577888899999999999877543 333333 346777888887654433 222222
Q ss_pred ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 006034 106 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG-ELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKES 184 (663)
Q Consensus 106 ~~~~~~~~alllg~~ls~TS~~vv~~il~~~~-~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~ 184 (663)
.+||....|.-+++++. ++.=.| ..+......+++.+++||+.++++.+++. +. +-+ +..+
T Consensus 131 ~~GWgIPmATDIAFAlg---------vLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t~-~i~-~~~L---- 192 (438)
T PRK14856 131 QHGFGIPMATDIAFALG---------VIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY---TT-NLK-FAWL---- 192 (438)
T ss_pred cCccccccHHHHHHHHH---------HHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---CC-CCc-HHHH----
Confidence 34455555444444443 333222 24566677889999999999988887643 11 111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCc-h-------
Q 006034 185 LKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-F------- 256 (663)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~-~------- 256 (663)
+...+.++ ..+++.+. +.+.....+ .+....++.....|+|+.++..+.|+++|..+ .
T Consensus 193 ~~a~~~~~-----~l~~ln~~-------~v~~~~~Y~--~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~ 258 (438)
T PRK14856 193 LGALGVVL-----VLAVLNRL-------NVRSLIPYL--LLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVEL 258 (438)
T ss_pred HHHHHHHH-----HHHHHHHc-------CCccccHHH--HHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhh
Confidence 11111111 11222221 112222111 23334566788999999999999999998531 0
Q ss_pred -------------------------------------hhHHHhhhhch-hhhhHHHH-HHHhccccChhHHhhhHHHHHH
Q 006034 257 -------------------------------------RTQIEADIRPF-RGLLLGLF-FVTTGSSIDIELLFREWPNVLA 297 (663)
Q Consensus 257 -------------------------------------~~~i~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~~~~~~l~ 297 (663)
-+++++.++|. ..+.+|+| |...|..++.......-+..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lG 338 (438)
T PRK14856 259 LELGKRYAETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLG 338 (438)
T ss_pred hhhhhhhhccccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHH
Confidence 13466677776 45889999 8999999986533222344566
Q ss_pred HHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006034 298 LLAGLIIIKTLIISAIGPRV----------GLTLQESVRIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 298 ~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~~~g~~l~~~G~~~lvla~~a~~ 347 (663)
+++.++++|+++++..++.. |.+|++-.-.|..-+..=++++.++..+++
T Consensus 339 I~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 339 VILGLCLGKPLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77888999999998887652 668888887777444444666777777773
No 27
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.21 E-value=5.2e-09 Score=109.59 Aligned_cols=269 Identities=18% Similarity=0.208 Sum_probs=164.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcccccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 105 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~ 105 (663)
..+-+.+.-+.+++|.+|+|++.+.+. +.+|.. ...++.++++|.++...+ +..++.
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~-----------------n~~~~~ 118 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSI-----------------NHDIKV 118 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhh-----------------ccCCcc
Confidence 344577777889999999999877443 333333 346778888887765443 212222
Q ss_pred ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHH
Q 006034 106 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESL 185 (663)
Q Consensus 106 ~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~l 185 (663)
.++|....|.-+++++.. ..++.+ ..+....-.+++.+++||+.++++.+++. ++.-.+..+
T Consensus 119 ~~GW~IP~ATDIAFAlgv------LallG~--rvP~~lrvFLlaLAIvDDlgAI~VIAlFY-----t~~i~~~~L----- 180 (383)
T PRK14854 119 INGWAIPSATDIAFTLGI------LALLGT--RVPAKLKLLVITIAIFDDIAAIAIIAIFY-----TKSLSLLSL----- 180 (383)
T ss_pred cCccccccHHHHHHHHHH------HHHhcC--CCCHHHHHHHHHHHHHHhhhhHhheeeec-----CCCccHHHH-----
Confidence 344555555555554442 222222 25666677788999999999988877642 111112111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCC-----chhhHH
Q 006034 186 KALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-----NFRTQI 260 (663)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~-----~~~~~i 260 (663)
..+.+.+ ...++. ++..+.++.-.+ +......++.....|+|+.++..+.|+++|.. ...+++
T Consensus 181 --~~A~~~~--~~l~~~----nr~~~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rl 248 (383)
T PRK14854 181 --SLGTLFI--LAMIIC----NRIFKINRSSVY----VVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFM 248 (383)
T ss_pred --HHHHHHH--HHHHHH----HHhcCCceehHH----HHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHH
Confidence 1111111 111121 111111122222 12334456778899999999999999999963 123678
Q ss_pred Hhhhhch-hhhhHHHH-HHHhccccChhHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHH
Q 006034 261 EADIRPF-RGLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESVRI 327 (663)
Q Consensus 261 ~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~-~~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~~~ 327 (663)
++.++|. ..+.+|+| |...|..++-..+.. ..+..+.+++.++++|+++++..++.. |.+|++-.-.
T Consensus 249 eh~L~p~v~~~IlPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv 328 (383)
T PRK14854 249 EDSLHPWIIYFILPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGI 328 (383)
T ss_pred HHHhhchHHHhhHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence 8899998 56889999 888998884222221 123455677888999999988877642 5688888888
Q ss_pred HHhhhhhhhHHHHHHHHHHH
Q 006034 328 GLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 328 g~~l~~~G~~~lvla~~a~~ 347 (663)
|+.-+..=++++.++..+++
T Consensus 329 ~~L~GIGFTmSLFIa~LAF~ 348 (383)
T PRK14854 329 SLLCGIGFTMSLFIGVLAFN 348 (383)
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 87444444667777777774
No 28
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.12 E-value=1.5e-08 Score=106.46 Aligned_cols=268 Identities=20% Similarity=0.221 Sum_probs=163.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcc-ccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHS-RSD 104 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~-~~~ 104 (663)
..+-+.+.-+.+++|.+|+|++.+.+. +.+|.. ...++.++++|.++...+ +. .+.
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~-----------------n~~~~~ 121 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLF-----------------NYADPV 121 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhhe-----------------ecCCCc
Confidence 345577777889999999999887553 233333 346777888887664433 21 112
Q ss_pred cccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 006034 105 LVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKES 184 (663)
Q Consensus 105 ~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~ 184 (663)
..++|....|.-++.++.. ..++.+ ..+......+++.+++||+.++++.+++. + +.-.+..+
T Consensus 122 ~~~GWaIP~ATDIAFalgv------lallG~--rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t--~~i~~~~L---- 184 (388)
T PRK09561 122 TREGWAIPAATDIAFALGV------LALLGS--RVPVALKIFLLALAIIDDLGAIVIIALFY---T--SDLSMVSL---- 184 (388)
T ss_pred ccCccccccHHHHHHHHHH------HHHhcC--CCCHHHHHHHHHHHHHHHhhhHhheeeec---C--CCccHHHH----
Confidence 2344555555555544432 122222 24566677888999999999988887643 1 11112211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCc-----hhhH
Q 006034 185 LKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-----FRTQ 259 (663)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~-----~~~~ 259 (663)
..+..++ ...++.++ .+.+...... ......++.....|+|+.++..+.|+++|..+ ..++
T Consensus 185 ---~~a~~~~--~~l~~ln~-------~~v~~~~~Y~--~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~r 250 (388)
T PRK09561 185 ---GVAAVAI--AVLAVLNL-------CGVRRTSVYI--LVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAER 250 (388)
T ss_pred ---HHHHHHH--HHHHHHHH-------cCCccchHHH--HHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHH
Confidence 1111111 11122221 1222222222 22334567788999999999999999999631 2467
Q ss_pred HHhhhhch-hhhhHHHH-HHHhccccChhHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHH
Q 006034 260 IEADIRPF-RGLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESVR 326 (663)
Q Consensus 260 i~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~-~~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~~ 326 (663)
+++.++|. ..+.+|+| |...|..++-..+.. ..+..+.+++.++++|+++++..++.. |.+|++-.-
T Consensus 251 leh~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~g 330 (388)
T PRK09561 251 LEHGLHPWVAFLILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYA 330 (388)
T ss_pred HHHHhhhhhhheeHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 88999998 45689998 888898883222211 123455677888899999988887642 568888888
Q ss_pred HHHhhhhhhhHHHHHHHHHHH
Q 006034 327 IGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 327 ~g~~l~~~G~~~lvla~~a~~ 347 (663)
.|..-+-.=++++.++..+++
T Consensus 331 v~~L~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 331 VGVLCGIGFTMSIFIASLAFG 351 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 887434444566667777774
No 29
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.11 E-value=1.9e-08 Score=106.02 Aligned_cols=269 Identities=19% Similarity=0.241 Sum_probs=163.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcccccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 105 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~ 105 (663)
..+-+.+--+.+++|.+|+|++-+.+. +.+|.. ...++.++++|.++...+- .+ .+..
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n---------------~g-~~~~ 122 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFN---------------YN-NPET 122 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheee---------------cC-CCcc
Confidence 344577777889999999999877543 333333 3467778888877654431 11 1112
Q ss_pred ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHH
Q 006034 106 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESL 185 (663)
Q Consensus 106 ~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~l 185 (663)
.++|....|.-++.++.. ..++.+ ..+......+++.+++||+.++++.+++.. ++-+ +..+ +
T Consensus 123 ~~GWgIPmATDIAFAlgv------L~llG~--rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~i~-~~~L----~ 185 (389)
T PRK09560 123 LRGWAIPAATDIAFALGV------LALLGK--RVPVSLKVFLLALAIIDDLGAIVIIALFYT----SDLS-LPAL----A 185 (389)
T ss_pred cCccccccHHHHHHHHHH------HHHhcC--CCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCCC-HHHH----H
Confidence 344555555555544432 123332 246666778889999999999888876431 1111 1111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCc-------hhh
Q 006034 186 KALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETN-------FRT 258 (663)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~-------~~~ 258 (663)
.....+. ..++..+. +.+...... ......++.....|+|+.++..+.|+++|..+ ..+
T Consensus 186 ~a~~~~~-----~l~~ln~~-------~v~~~~~Y~--~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~ 251 (389)
T PRK09560 186 LAAIAIA-----VLFLLNRL-------GVTKLTPYL--IVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLH 251 (389)
T ss_pred HHHHHHH-----HHHHHHHc-------CCccchHHH--HHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHH
Confidence 1111111 11222221 222222222 23334567788999999999999999999631 136
Q ss_pred HHHhhhhchh-hhhHHHH-HHHhccccChhHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHH
Q 006034 259 QIEADIRPFR-GLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESV 325 (663)
Q Consensus 259 ~i~~~~~~~~-~~~~plF-Fv~vG~~l~~~~l~~-~~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~ 325 (663)
++++.++|.. .+.+|+| |...|..++-..+.. ..+..+.+++.++++|+++++..++.. |.+|++-.
T Consensus 252 rleh~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~ 331 (389)
T PRK09560 252 HLEHALHPWVAFAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIY 331 (389)
T ss_pred HHHHHhhhhhhhhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 7888999985 4559999 888998884322322 123455677888999999998887652 66888888
Q ss_pred HHHHhhhhhhhHHHHHHHHHHH
Q 006034 326 RIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 326 ~~g~~l~~~G~~~lvla~~a~~ 347 (663)
-.|..-+-.=++++.++..+++
T Consensus 332 gv~~L~GIGFTmSLFIa~LAF~ 353 (389)
T PRK09560 332 GVSVLCGIGFTMSLFIGSLAFG 353 (389)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 8887444444667777777773
No 30
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.11 E-value=1.5e-08 Score=107.98 Aligned_cols=264 Identities=17% Similarity=0.158 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcccccc
Q 006034 32 DVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDL 105 (663)
Q Consensus 32 ~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~ 105 (663)
..+-+.+--+.+++|.+|+|++-+.+. +.+|.. ...++.++++|.++...+ ....+.
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~-----------------n~~~~~ 125 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTAL-----------------NAGGPG 125 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHhee-----------------ecCCCc
Confidence 344577777888999999999877553 223333 346777888887654433 211111
Q ss_pred ccccCHHHHHHHHHHHHhhhHHHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHH
Q 006034 106 VNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG-ELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKES 184 (663)
Q Consensus 106 ~~~~~~~~alllg~~ls~TS~~vv~~il~~~~-~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~ 184 (663)
.++|....|.-++++ ..++.=.| ..+......+++.+++||+.++++.+++. + ++-+ +..+
T Consensus 126 ~~GWgIPmATDIAFA---------lgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t-~~i~-~~~L---- 187 (423)
T PRK14855 126 ASGWGVPMATDIAFA---------LGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---T-SGLN-LLAL---- 187 (423)
T ss_pred cCccccccHHHHHHH---------HHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---C-CCCC-HHHH----
Confidence 334555444444444 33333322 24556677788999999999988877643 1 1112 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCC--ch------
Q 006034 185 LKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET--NF------ 256 (663)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~--~~------ 256 (663)
..+.+.+. ..+++.+ .+.+.....+ ......++.....|+|+.++..+.|+++|.. +.
T Consensus 188 ---~~a~~~~~--~l~~ln~-------~~v~~~~~Y~--~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~ 253 (423)
T PRK14855 188 ---LLAALTWA--LALLAGR-------LGVTSLKIYA--VLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLAS 253 (423)
T ss_pred ---HHHHHHHH--HHHHHHH-------cCCccccHHH--HHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHH
Confidence 11111111 1112221 1222222111 2333466778899999999999999999863 10
Q ss_pred ------------------------------hhHHHhhhhch-hhhhHHHH-HHHhccccChhHHhhhHHHHHHHHHHHHH
Q 006034 257 ------------------------------RTQIEADIRPF-RGLLLGLF-FVTTGSSIDIELLFREWPNVLALLAGLII 304 (663)
Q Consensus 257 ------------------------------~~~i~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~~~~~~l~~~~~~~l 304 (663)
.+++++.++|. ..+.+|+| |...|..++-.. .. +..+.+++.+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~--pv~lGI~~GLvv 330 (423)
T PRK14855 254 LLDAAAPGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG--TVSLGVFLGLLL 330 (423)
T ss_pred HHHHhhcccchhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC--cHHHHHHHHHHh
Confidence 24566777777 44688988 888898884332 11 344567788899
Q ss_pred HHHHHHHHHHhhc----------CCChHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 006034 305 IKTLIISAIGPRV----------GLTLQESVRIGLLLSQGGEFAFVVFSLANR 347 (663)
Q Consensus 305 ~K~~~~~~~~~~~----------g~~~r~~~~~g~~l~~~G~~~lvla~~a~~ 347 (663)
+|+++++..++.. |.+|++-.-.|+.-+-.=++++.++..+++
T Consensus 331 GK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 331 GKPLGVVGGAWLAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFA 383 (423)
T ss_pred cchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999998887652 678888888887444444667777777774
No 31
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.89 E-value=3e-09 Score=111.81 Aligned_cols=269 Identities=22% Similarity=0.255 Sum_probs=149.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHH----HhhhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccc-c
Q 006034 31 TDVKVLSEWGILFLLFEMGLELSLARLK----ALAKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSR-S 103 (663)
Q Consensus 31 ~~l~~l~~lgl~lllF~~Glel~~~~l~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~-~ 103 (663)
+..+-+.+.-+.+++|.+|+|++.+.+. +.+|.. ...++.++++|.++... ++.. +
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~-----------------~n~~~~ 116 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLA-----------------FNAGGP 116 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG-----------------G--SST
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHhe-----------------eecCCC
Confidence 3455677788889999999999877543 333333 34566677777655333 2211 1
Q ss_pred ccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHH
Q 006034 104 DLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKG-ELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVK 182 (663)
Q Consensus 104 ~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~-~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~ 182 (663)
+..++|....+ |+.+....++.=.+ ..+....-.+++.+++||+.++++.+++.. . +-+ +..+
T Consensus 117 ~~~~GW~IP~A---------TDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~-~i~-~~~L-- 180 (378)
T PF06965_consen 117 EAAHGWAIPMA---------TDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---D-GIS-LLWL-- 180 (378)
T ss_dssp THHHHTSSSS------------HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS----------HHHH--
T ss_pred CcCceEEeccc---------ccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---C-CCC-HHHH--
Confidence 12233444433 44444444444332 245556678889999999999988877531 1 111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCch------
Q 006034 183 ESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNF------ 256 (663)
Q Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~------ 256 (663)
+.....+. ..+.++| .+.+..... +......++.....|+|+.++..+.|+++|..+.
T Consensus 181 --~~a~~~~~-----~l~~l~r-------~~v~~~~~Y--~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~ 244 (378)
T PF06965_consen 181 --LLAAAALL-----LLFVLNR-------LGVRSLWPY--LLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREA 244 (378)
T ss_dssp --HHHHHHHH-----HHHHHHH-------TT---THHH--HHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----
T ss_pred --HHHHHHHH-----HHHHHHH-------CCCceehHH--HHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccC
Confidence 11111111 1122222 111111111 1223345667789999999999999999997532
Q ss_pred ---hhHHHhhhhch-hhhhHHHH-HHHhccccChhHHhh-hHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCC
Q 006034 257 ---RTQIEADIRPF-RGLLLGLF-FVTTGSSIDIELLFR-EWPNVLALLAGLIIIKTLIISAIGPRV----------GLT 320 (663)
Q Consensus 257 ---~~~i~~~~~~~-~~~~~plF-Fv~vG~~l~~~~l~~-~~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~ 320 (663)
-+++++.++|. ..+.+|+| |...|..++-..+.. .-+..+.+++..+++|+++++..++.. +.+
T Consensus 245 ~~pl~rle~~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~ 324 (378)
T PF06965_consen 245 ESPLERLEHALHPWVAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVS 324 (378)
T ss_dssp S-HHHHHHHHHHHHHHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--
T ss_pred CCHHHHHHHHhhhhhhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCC
Confidence 24788888888 45679999 899999988766432 123334566788899999988777642 567
Q ss_pred hHHHHHHHHhhhhhhhHHHHHHHHHHHc
Q 006034 321 LQESVRIGLLLSQGGEFAFVVFSLANRL 348 (663)
Q Consensus 321 ~r~~~~~g~~l~~~G~~~lvla~~a~~~ 348 (663)
|++-.-.|..-+-.=++++.++..+++.
T Consensus 325 w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 325 WRHLYGVGLLAGIGFTMSLFIAGLAFDD 352 (378)
T ss_dssp GGGGTTHHHHTT--HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7777777764444446777777787766
No 32
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.82 E-value=6.9e-07 Score=90.45 Aligned_cols=263 Identities=20% Similarity=0.252 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHHHhhcCChHHHHHh----hhHH--HHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhcc-cccccc
Q 006034 35 VLSEWGILFLLFEMGLELSLARLKAL----AKFA--FGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHS-RSDLVN 107 (663)
Q Consensus 35 ~l~~lgl~lllF~~Glel~~~~l~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~-~~~~~~ 107 (663)
-+.+--..++.+.+|+|++.+.+... ++.+ ...+..+++.|.++... ++. .|...+
T Consensus 65 WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy~~-----------------~n~~~p~~~~ 127 (390)
T COG3004 65 WINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYLA-----------------LNAGDPATLE 127 (390)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHhhe-----------------eecCChhhhc
Confidence 35555567788889999988766432 2222 33566667777654332 221 122234
Q ss_pred ccCHHHHHHHHHHHHhhhHHHHHHHHhhcC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchhhHHHHHHHH
Q 006034 108 IRSIDEAVVIGAALSLSSSAFVLQLLAEKG-ELPTRFGSATLGILLLQDIAVVPLLVILPVLESQVSESVWPMLVKESLK 186 (663)
Q Consensus 108 ~~~~~~alllg~~ls~TS~~vv~~il~~~~-~~~~~~g~~~l~~~~~~Di~~i~~l~i~~~~~~~~~~~~~~~~~~~~l~ 186 (663)
||....|.-++. ...++.-++ ..++...-.+++.+++||+-++++.++... . .-+ +..+. .
T Consensus 128 GWaIP~ATDiAF---------AlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt--~--~Ls-~~al~----~ 189 (390)
T COG3004 128 GWAIPMATDIAF---------ALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT--T--DLS-MAALG----I 189 (390)
T ss_pred CcCcccHHHHHH---------HHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc--C--Ccc-HHHHH----H
Confidence 455444444444 444333322 356666777889999999999888776431 1 111 11110 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCC-----chhhHHH
Q 006034 187 ALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET-----NFRTQIE 261 (663)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~-----~~~~~i~ 261 (663)
....+.+. . .+++..-++..-+ +++....+..-...|+|..++..+.|+.+|-. +.-|+++
T Consensus 190 a~~~i~vL-----~----~lN~~~v~~l~~Y-----~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~le 255 (390)
T COG3004 190 AALAIAVL-----A----VLNRLGVRRLSPY-----LLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLE 255 (390)
T ss_pred HHHHHHHH-----H----HHHHhCchhhhHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHH
Confidence 11111111 1 1111110111111 12222344455689999999999999999943 3447888
Q ss_pred hhhhch-hhhhHHHH-HHHhccccC---hhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHH
Q 006034 262 ADIRPF-RGLLLGLF-FVTTGSSID---IELLFREWPNVLALLAGLIIIKTLIISAIGPRV----------GLTLQESVR 326 (663)
Q Consensus 262 ~~~~~~-~~~~~plF-Fv~vG~~l~---~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~~----------g~~~r~~~~ 326 (663)
+.+.|. .-+.+|+| |...|.++. ...+.+ +..+.+++..+++|+++++..++.. |.+|++-..
T Consensus 256 h~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s--~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~ 333 (390)
T COG3004 256 HALHPWVAFFILPLFAFANAGVSLQGVSLSGLTS--PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYG 333 (390)
T ss_pred HHhhhhHHHHHHHHHHHccCCccccccccccccc--chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHH
Confidence 888887 46788888 888888876 333332 3345567788899999998888653 667888777
Q ss_pred HHHhhhhhhhHHHHHHHHHHHc
Q 006034 327 IGLLLSQGGEFAFVVFSLANRL 348 (663)
Q Consensus 327 ~g~~l~~~G~~~lvla~~a~~~ 348 (663)
.++.-+-.=++++.++..+++.
T Consensus 334 v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 334 VSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred HHHHHhhhHHHHHHHHHHhcCC
Confidence 7774344445666777777654
No 33
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=98.35 E-value=9.4e-07 Score=83.57 Aligned_cols=82 Identities=17% Similarity=0.205 Sum_probs=67.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.++++|+|+|++|...++.|. +.|.+|++|+ |+..+++.+.+. +. .+.+.++++++++++.|+
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll----------~~ga~V~VIs--p~~~~~l~~l~~--i~---~~~~~~~~~dl~~a~lVi 75 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLK----------DTGAFVTVVS--PEICKEMKELPY--IT---WKQKTFSNDDIKDAHLIY 75 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEc--CccCHHHHhccC--cE---EEecccChhcCCCceEEE
Confidence 467999999999999999997 7899999995 555555554321 11 245778888999999999
Q ss_pred EEcCCHHHHHHHHHHHHHh
Q 006034 483 IMYTDKKRTIEAVQRLRLA 501 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~ 501 (663)
++|+||+.|..++..+|+.
T Consensus 76 aaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 76 AATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred ECCCCHHHHHHHHHHHHHC
Confidence 9999999999999999885
No 34
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.30 E-value=4.5e-07 Score=98.88 Aligned_cols=313 Identities=14% Similarity=0.134 Sum_probs=189.4
Q ss_pred chhHHHHHHHHHHhccC--CCc-CCchhH--HHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q 006034 8 RSQILGFFFAGIVLNQL--GII-RNLTDV--KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAF 82 (663)
Q Consensus 8 lP~ivg~ilaGillGp~--glv-~~~~~l--~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (663)
+|.-.-.|+.|+++|-. +.- .....+ +.+--.-+--++|.+|+-+.-+.+-.+..+++..++++.+..++...+.
T Consensus 68 ~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~s 147 (670)
T KOG1966|consen 68 VPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGAS 147 (670)
T ss_pred CchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence 57777788888888862 211 111122 2233344556889999999999999999999999999998866554433
Q ss_pred hCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHH
Q 006034 83 ELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLL 162 (663)
Q Consensus 83 ~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l 162 (663)
.+ |... ...++.. .+...-+++|...|+.+|+.+..+..|.+. |.-.=-++.|++++||.+.+++.
T Consensus 148 L~------~i~~-~glf~~~------~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGESLlNDaVTVVLY 213 (670)
T KOG1966|consen 148 LY------AISL-SGLFGMS------IGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGESLLNDAVTVVLY 213 (670)
T ss_pred HH------HHHH-hhhcCCC------chHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhhhhcCceEEehH
Confidence 21 1111 1223311 357788999999999999999999999885 33333457799999999998887
Q ss_pred HHHHHhhhcCCCch-----hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHh
Q 006034 163 VILPVLESQVSESV-----WPMLVKESL-KALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKL 236 (663)
Q Consensus 163 ~i~~~~~~~~~~~~-----~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~ 236 (663)
-+...+..-++.+. .... ..+. -.+++. +++++..++..-..++..+.+.-| ..+++++...++..+|.+
T Consensus 214 ~~f~sf~~ig~~n~~~~d~~~G~-~sFfVVslGG~-lvGivfafl~sl~tkft~~vrvie--Pvfif~~pYlaYL~aEm~ 289 (670)
T KOG1966|consen 214 NMFISFVEIGSDNLTTIDYVLGV-VSFFVVSLGGA-LVGIVFAFLASLVTKFTKHVRVLE--PVFIFLLPYLAYLTAEMF 289 (670)
T ss_pred HHHHHHHHhcccceeEeeeecce-eEEEEEecCch-hHHHHHHHHHHHHHHhhcceeeec--chhhhhHHHHHHHHHHHH
Confidence 66655544322110 0000 0111 111222 222222233332333322222222 245566677788899999
Q ss_pred CCcHHHHHHHhhhhccCC---chhhHHHhhhh----chhhhhHHHHHHHhccccChhHHhhhH--HHHHHHHHHHHHHHH
Q 006034 237 GFSDTLGAFLAGAILAET---NFRTQIEADIR----PFRGLLLGLFFVTTGSSIDIELLFREW--PNVLALLAGLIIIKT 307 (663)
Q Consensus 237 G~s~~lgAflaGl~l~~~---~~~~~i~~~~~----~~~~~~~plFFv~vG~~l~~~~l~~~~--~~~l~~~~~~~l~K~ 307 (663)
++|++++-.+.|++.... ..+++...... .+...-.++-|+++|.+.-=. .+.| ..+..-++..++.|.
T Consensus 290 hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~h~wd~~Fi~~T~~fc~~~R~ 367 (670)
T KOG1966|consen 290 HLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--NHHWDFAFICLTLVFCLIYRA 367 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--cceeehhhhhhHHHHHHHHHH
Confidence 999999999999999864 22333332222 234567778899999875332 2333 334444555667788
Q ss_pred HHHHHHHhhc------CCChHHHHHHHHhhhhhhhHHHHH
Q 006034 308 LIISAIGPRV------GLTLQESVRIGLLLSQGGEFAFVV 341 (663)
Q Consensus 308 ~~~~~~~~~~------g~~~r~~~~~g~~l~~~G~~~lvl 341 (663)
+++...+++. +++..+-+.++.+ +-||.+++.+
T Consensus 368 lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~L 406 (670)
T KOG1966|consen 368 IGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGL 406 (670)
T ss_pred HHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeE
Confidence 8877777653 4556666665553 4566555444
No 35
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.22 E-value=0.0015 Score=70.61 Aligned_cols=291 Identities=19% Similarity=0.134 Sum_probs=148.6
Q ss_pred CchhHHHHHHHHHHhccCCCc--C-CchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 006034 7 CRSQILGFFFAGIVLNQLGII--R-NLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFE 83 (663)
Q Consensus 7 ~lP~ivg~ilaGillGp~glv--~-~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (663)
.+|+++-.++.|+++.++|++ + ..+.-+.+.+..+-+-++..=++.|+++++|.+++.+..=..+.+.+.+.. .+
T Consensus 24 ~l~~~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~-~v- 101 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGA-VV- 101 (378)
T ss_pred hcCHHHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHH-HH-
Confidence 578999999999999999988 3 235667788888777777777888999999998887654444333333222 22
Q ss_pred CCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHH--H-hhcCCCCChhHHHHHHHHHHHHHHHHH
Q 006034 84 LPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQL--L-AEKGELPTRFGSATLGILLLQDIAVVP 160 (663)
Q Consensus 84 ~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~i--l-~~~~~~~~~~g~~~l~~~~~~Di~~i~ 160 (663)
++.+++... ..+..-++..++.|-.+=.... + +-++. + ....-.....|+++.-+
T Consensus 102 -----------a~~l~~~~l-------~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~---~-~~~~~a~~aaDnv~~~~ 159 (378)
T PF05684_consen 102 -----------AFLLFGGFL-------GPEGWKIAGMLAGSYIGGSVNFVAVAEALGV---S-DSLFAAALAADNVVMAL 159 (378)
T ss_pred -----------HHHHHhhcc-------cchHHHHHHHHHhcccCchhHHHHHHHHHCC---C-HHHHHHHHHHHHHHHHH
Confidence 123343210 0112222223332222211111 1 11222 1 23333334445555444
Q ss_pred HHHHHHHhhhcCC-----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chHHH--HHHHHHHHHHHHH
Q 006034 161 LLVILPVLESQVS-----ESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARS-SEAFV--ALCLLTVAGTSLL 232 (663)
Q Consensus 161 ~l~i~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~e~~~--~~~l~~~~~~~~l 232 (663)
.+.++..+..... ......- .. .. ..-..+.- ....+... .+... ...+.++.....+
T Consensus 160 ~~~~l~~l~~~~~~~~~~~~~~~~~-~~---~~---------~~~~~~~~-~~~~~~~~~~~l~~~la~a~~v~~~s~~l 225 (378)
T PF05684_consen 160 WFAFLLALPPFARKFDRWTKADTSS-IE---AL---------EEEIEAEE-AEWARKPISQDLAFLLAVAFAVVALSHAL 225 (378)
T ss_pred HHHHHHHHhhhhHHhhhccCCCccc-cc---hh---------hhhhhhhh-hccccCCcHhHHHHHHHHHHHHHHHHHHH
Confidence 4444333322000 0000000 00 00 00000000 00000000 11111 1111111122223
Q ss_pred HHHh-----CC----cHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHH
Q 006034 233 TQKL-----GF----SDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLI 303 (663)
Q Consensus 233 ~~~~-----G~----s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~ 303 (663)
++.+ +. -.++-....|++.+.++..+.+ +--+++..+++-+||..+|+..|+..+.+ -+..+.+.++.+
T Consensus 226 a~~l~~~~~~~~~~~~~il~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l 303 (378)
T PF05684_consen 226 AAWLPPLFAGISSSTWLILTVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIIL 303 (378)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHH
Confidence 3333 11 1233445566666655555444 55566778899999999999999999987 444555666677
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHH
Q 006034 304 IIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAF 339 (663)
Q Consensus 304 l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~l 339 (663)
.+..+..+..+++++.|..+....+- +..|..+-
T Consensus 304 ~iH~~l~l~~~kl~k~~l~~~~vAS~--AnIGGpaT 337 (378)
T PF05684_consen 304 AIHLLLMLILGKLFKIDLFELLVASN--ANIGGPAT 337 (378)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHhh--cccCCcch
Confidence 88888899999999999988776664 34444433
No 36
>PRK04148 hypothetical protein; Provisional
Probab=98.11 E-value=3.2e-05 Score=70.32 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=80.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.++++++|.| +|..+++.|. +.|++|+.+|.|++.++.+++.+.+++.+|..+++.=- -++||.+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~----------~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~---y~~a~liy 82 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLK----------ESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEI---YKNAKLIY 82 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHH---HhcCCEEE
Confidence 3579999999 9999999998 78999999999999999999999999999999876432 25789888
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
..-.-.|---.+...||+.+.++-+.-..++
T Consensus 83 sirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 83 SIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred EeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 7777777777788889999877555444444
No 37
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.02 E-value=0.0012 Score=68.18 Aligned_cols=278 Identities=17% Similarity=0.147 Sum_probs=150.9
Q ss_pred HHHHHHHHHhccC--CCcC--C--chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhhhCC
Q 006034 12 LGFFFAGIVLNQL--GIIR--N--LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELP 85 (663)
Q Consensus 12 vg~ilaGillGp~--glv~--~--~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (663)
+-.++.|.+++.+ +..+ . ...++.=+.--+..++|-.|.++|++...+..|+...+...-+.+.+++...+
T Consensus 16 ~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~--- 92 (312)
T PRK12460 16 VVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLV--- 92 (312)
T ss_pred HHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHH---
Confidence 4567788888743 1111 0 11121112234678899999999999887777777777666777766655444
Q ss_pred CCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006034 86 PNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVIL 165 (663)
Q Consensus 86 ~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~ 165 (663)
..++|.. ++---..+.+-++.+.|--+.=..+..|+|. +++.| +..++++
T Consensus 93 ----------~~~~g~~-----g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~-~~d~g-------------A~~~~sl- 142 (312)
T PRK12460 93 ----------GKFFGAE-----GIFGLSGLAIVAAMSNSNGGLYAALMGEFGD-ERDVG-------------AISILSL- 142 (312)
T ss_pred ----------HHHcCcc-----cccchHHHHHHHHHhcCcHHHHHHHHHHcCC-Hhhhh-------------HHhhhhh-
Confidence 2455521 1111233444455555666666677777773 33322 2222222
Q ss_pred HHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHHHH
Q 006034 166 PVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLGAF 245 (663)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lgAf 245 (663)
. +++..+.+ .++. .++ ..+ ... . +.+.+=++
T Consensus 143 ---~---~GPf~tm~---------aLga-----~gL-A~i----------p~~---~---------------lv~lilpI 173 (312)
T PRK12460 143 ---N---DGPFFTML---------ALGA-----AGL-ANI----------PIM---A---------------LVAALLPL 173 (312)
T ss_pred ---c---cCcHHHHH---------HHHH-----HHH-hcC----------ChH---H---------------HHHHHHHH
Confidence 1 11111110 0000 001 000 000 0 01123366
Q ss_pred HhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHH
Q 006034 246 LAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRVGLTLQESV 325 (663)
Q Consensus 246 laGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~~g~~~r~~~ 325 (663)
+.|++++|.+ ++..+..++-..+.+|+|-+..|+++|++++.+.....+.+.+..++.-....++..+++|.+.+.+.
T Consensus 174 LiGmilGNld--~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~ 251 (312)
T PRK12460 174 VLGMILGNLD--PDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGGTGIAGA 251 (312)
T ss_pred HHHHHHhccc--hhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 8899999853 23556666666679999999999999999997753334444444555566667777788888888877
Q ss_pred HHH--HhhhhhhhHHHHHHHHHHHcCCCch--hhHHH-HHHHHHHHHhhhHHHHHHhH
Q 006034 326 RIG--LLLSQGGEFAFVVFSLANRLGVLPL--ELNKL-LIIVVVLSMALTPLLNEIGR 378 (663)
Q Consensus 326 ~~g--~~l~~~G~~~lvla~~a~~~g~i~~--~~~~~-lv~~vvlt~ii~pi~~~~~~ 378 (663)
.++ .+-+.-| -+ .++.-...+.+ +..+. +-.++++|.+++|++..+..
T Consensus 252 li~stAGnAIcg-pA----AVaAadP~~~~~~~~Ataqvaa~vivTail~P~~t~~~~ 304 (312)
T PRK12460 252 AASSTAGNAVAT-PL----AIAAADPSLAPVAAAATAQVAASVIVTAILTPLLTSWVA 304 (312)
T ss_pred HHHHHhhHHHHH-HH----HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777 2211111 11 12222222222 22233 34456778899999876543
No 38
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.97 E-value=0.0026 Score=65.39 Aligned_cols=286 Identities=17% Similarity=0.187 Sum_probs=149.6
Q ss_pred hHHHHHHHHHHhccC--CCcC---C-chhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Q 006034 10 QILGFFFAGIVLNQL--GIIR---N-LTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFE 83 (663)
Q Consensus 10 ~ivg~ilaGillGp~--glv~---~-~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (663)
..+-.++.|.++..+ +..+ . ...+..=+.--+.+++|-.|.++|++...+..||...+.+.-++++++++..+
T Consensus 14 ~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~- 92 (314)
T PF03812_consen 14 MMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLV- 92 (314)
T ss_pred eeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHH-
Confidence 355667788888753 2211 1 11111223445678899999999999999988888888888888877765554
Q ss_pred CCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 006034 84 LPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLV 163 (663)
Q Consensus 84 ~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~ 163 (663)
..++|...-..+.+--..++.+-++++.+-.++=..+..|++. +++.| +.+...++|.= +++
T Consensus 93 ------------~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-~~D~g--A~~i~sl~~GP---f~t 154 (314)
T PF03812_consen 93 ------------GKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-EEDVG--AFSILSLNDGP---FFT 154 (314)
T ss_pred ------------HHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-HHHhH--HHHHHHhhhhH---HHH
Confidence 3455522100000111244555566666777877888888774 33322 22222222211 111
Q ss_pred HHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHhCCcHHHH
Q 006034 164 ILPVLESQVSESVWPMLVKESLKALAGLGLLSLGGKYLLRRVFEVVAEARSSEAFVALCLLTVAGTSLLTQKLGFSDTLG 243 (663)
Q Consensus 164 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~l~~~~~~~~l~~~~G~s~~lg 243 (663)
++. ++ ..+.--+++. .+. ..+=
T Consensus 155 Ml~------------------------LG---~sG~a~ip~~----------------~lv---------------~~ll 176 (314)
T PF03812_consen 155 MLA------------------------LG---ASGLANIPWM----------------SLV---------------AALL 176 (314)
T ss_pred HHH------------------------Hh---hccccCCCHH----------------HHH---------------HHHH
Confidence 100 00 0000001110 000 0122
Q ss_pred HHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCChH
Q 006034 244 AFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPR-VGLTLQ 322 (663)
Q Consensus 244 AflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~-~g~~~r 322 (663)
.++.|+++.|.+ +++.+.+.+-...++|+|-..+|..+|+..+.+.-...+++-+..++.-....++.-++ .|-+..
T Consensus 177 P~iiG~iLGNLD--~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~i~~~~g~ 254 (314)
T PF03812_consen 177 PIIIGMILGNLD--PDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRLILKGNGV 254 (314)
T ss_pred HHHHHHHHhcCC--HHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHHcCCCCc
Confidence 567889999864 56777888888899999999999999999987642222222222223333334444444 233322
Q ss_pred HHHHHHHhhhhhhhHHHHH-HHHHHHcCCCch---hhHHHHHHHHHHHHhhhHHHHHHhH
Q 006034 323 ESVRIGLLLSQGGEFAFVV-FSLANRLGVLPL---ELNKLLIIVVVLSMALTPLLNEIGR 378 (663)
Q Consensus 323 ~~~~~g~~l~~~G~~~lvl-a~~a~~~g~i~~---~~~~~lv~~vvlt~ii~pi~~~~~~ 378 (663)
. |+..+..+.-+... +.++.....+.+ .--..+...+++|.+++|++..+..
T Consensus 255 a----G~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~ 310 (314)
T PF03812_consen 255 A----GAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWA 310 (314)
T ss_pred e----eehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22222222222221 222222222222 2223344556779999999876544
No 39
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.88 E-value=5e-05 Score=74.93 Aligned_cols=105 Identities=17% Similarity=0.201 Sum_probs=79.2
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++++|.|+|++|+.+++.|. +.|++|++.|.|+++.+.+.+. +...+ |. ++.+ ..++|.++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~----------~~G~~Vvv~D~~~~~~~~~~~~~g~~~v--~~--~~l~----~~~~Dv~v 90 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLL----------EEGAKLIVADINEEAVARAAELFGATVV--AP--EEIY----SVDADVFA 90 (200)
T ss_pred CEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHcCCEEE--cc--hhhc----cccCCEEE
Confidence 57999999999999999998 7899999999999998887764 43322 22 2333 23799777
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecC----hhhHHHHHHcCCCeEEcCc
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD----MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~----~~~~~~l~~~Gad~vi~p~ 532 (663)
-+... |+.....+++++++ .|+..+|+ +++.+.|++.|+.. .|.
T Consensus 91 p~A~~---~~I~~~~~~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~--~Pd 138 (200)
T cd01075 91 PCALG---GVINDDTIPQLKAK-AIAGAANNQLADPRHGQMLHERGILY--APD 138 (200)
T ss_pred ecccc---cccCHHHHHHcCCC-EEEECCcCccCCHhHHHHHHHCCCEE--eCc
Confidence 44433 45555567888776 78889998 89999999999853 454
No 40
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.86 E-value=4.8e-05 Score=75.09 Aligned_cols=96 Identities=18% Similarity=0.132 Sum_probs=69.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|+|+|++|...++.|. +.|.+|++|+.+.. ..+.+.+.+. +.+ ++..++++++.++|.|
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll----------~~ga~V~VIs~~~~~~l~~l~~~~~-i~~----~~~~~~~~~l~~adlV 74 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLL----------KYGAHIVVISPELTENLVKLVEEGK-IRW----KQKEFEPSDIVDAFLV 74 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEcCCCCHHHHHHHhCCC-EEE----EecCCChhhcCCceEE
Confidence 468999999999999999997 78899999987652 2344444332 221 2235557788999999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL 517 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~ 517 (663)
+++|+|++.|..++..+++ + ..+-.+.+++..
T Consensus 75 iaaT~d~elN~~i~~~a~~-~---~lvn~~d~~~~~ 106 (202)
T PRK06718 75 IAATNDPRVNEQVKEDLPE-N---ALFNVITDAESG 106 (202)
T ss_pred EEcCCCHHHHHHHHHHHHh-C---CcEEECCCCccC
Confidence 9999999999999988854 2 234455555543
No 41
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.69 E-value=6.4e-05 Score=70.55 Aligned_cols=101 Identities=18% Similarity=0.303 Sum_probs=67.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
-++++|+|||+.|+.+|+.|+ ..|.+|+|.|.||-+.-++..+|+++.. ++++ ++++|.++
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr----------~~Ga~V~V~e~DPi~alqA~~dGf~v~~--------~~~a-~~~adi~v 83 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALR----------GLGARVTVTEIDPIRALQAAMDGFEVMT--------LEEA-LRDADIFV 83 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHH----------HTT-EEEEE-SSHHHHHHHHHTT-EEE---------HHHH-TTT-SEEE
T ss_pred CCEEEEeCCCcccHHHHHHHh----------hCCCEEEEEECChHHHHHhhhcCcEecC--------HHHH-HhhCCEEE
Confidence 457999999999999999998 8999999999999998888888998763 3332 56899888
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEec---ChhhHHHHHHcCC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ---DMMHLLDLKKAGA 525 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~---~~~~~~~l~~~Ga 525 (663)
.+|++ .++......+++..+ -+++.+- ++-+.+.+++.+.
T Consensus 84 taTG~--~~vi~~e~~~~mkdg-ail~n~Gh~d~Eid~~~L~~~~~ 126 (162)
T PF00670_consen 84 TATGN--KDVITGEHFRQMKDG-AILANAGHFDVEIDVDALEANAV 126 (162)
T ss_dssp E-SSS--SSSB-HHHHHHS-TT-EEEEESSSSTTSBTHHHHHTCTS
T ss_pred ECCCC--ccccCHHHHHHhcCC-eEEeccCcCceeEeeccccccCc
Confidence 88887 344445567777544 5666543 4445556666643
No 42
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.42 E-value=0.00055 Score=67.74 Aligned_cols=84 Identities=15% Similarity=0.091 Sum_probs=68.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|+|++|..-++.|. +.|.+|+||+.+.. ..+.+.+. ...++.++....+ +++++.
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll----------~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~d------l~~~~l 72 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLL----------KAGAQLRVIAEELESELTLLAEQGGITWLARCFDADI------LEGAFL 72 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHH----------HCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHH------hCCcEE
Confidence 358999999999999999997 78999999988764 34455544 4667778776432 467999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
|+++|+|++.|..++..+|+.+
T Consensus 73 Vi~at~d~~ln~~i~~~a~~~~ 94 (205)
T TIGR01470 73 VIAATDDEELNRRVAHAARARG 94 (205)
T ss_pred EEECCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999875
No 43
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.40 E-value=0.00055 Score=68.30 Aligned_cols=113 Identities=16% Similarity=0.114 Sum_probs=79.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh----------HHHHHHHhcCCCEE--EecCCCHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP----------SVVKESRKLGFPIL--YGDASRPA 468 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~----------~~~~~~~~~~~~vi--~GD~~~~~ 468 (663)
...+++|.|+|++|+.+++.|. +.|. .|.+.|.|. +..+...+.+.... .+|..+.+
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~----------~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLA----------EEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 3468999999999999999998 5655 566789988 77776665432222 13444444
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec---ChhhHHHHHHcCCCeEEcCch
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ---DMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~---~~~~~~~l~~~Gad~vi~p~~ 533 (663)
.+. .. ++|.++-+...+.. ....++++.++ .|+..+| +++..+.|++-| .++.|..
T Consensus 92 ~l~--~~-~~DVlipaA~~~~i---~~~~a~~l~a~-~V~e~AN~p~t~~a~~~L~~~G--i~v~Pd~ 150 (217)
T cd05211 92 AIL--GL-DVDIFAPCALGNVI---DLENAKKLKAK-VVAEGANNPTTDEALRILHERG--IVVAPDI 150 (217)
T ss_pred cce--ec-cccEEeeccccCcc---ChhhHhhcCcc-EEEeCCCCCCCHHHHHHHHHCC--cEEEChH
Confidence 443 33 89988888776544 44566777544 4555888 788999999999 4778984
No 44
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.33 E-value=0.0016 Score=68.46 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=75.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC----HHHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR----PAVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~----~~~L~~a~i~~a~~ 480 (663)
+|.|+|.|.+|..++..|. +.|++|.++++++++.+.+.+.+..+-.|+.+. .+...+ ++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~d~ 69 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALA----------QAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE--LGPQDL 69 (304)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH--cCCCCE
Confidence 5899999999999999997 678999999999999888887665441222110 011222 378999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 522 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~ 522 (663)
+++++......-.+....+.+.++..++...|...+.+.+++
T Consensus 70 vila~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~ 111 (304)
T PRK06522 70 VILAVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA 111 (304)
T ss_pred EEEecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 999998875544444455556666678888887766666555
No 45
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.30 E-value=0.0013 Score=62.59 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=74.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.+|-++|.|++|..+++.|. +.|++|.+.|+++++.+.+.+.+... -.+-.|..++ +|.++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~----------~~g~~v~~~d~~~~~~~~~~~~g~~~---~~s~~e~~~~-----~dvvi~ 63 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLA----------KAGYEVTVYDRSPEKAEALAEAGAEV---ADSPAEAAEQ-----ADVVIL 63 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHH----------HTTTEEEEEESSHHHHHHHHHTTEEE---ESSHHHHHHH-----BSEEEE
T ss_pred CEEEEEchHHHHHHHHHHHH----------hcCCeEEeeccchhhhhhhHHhhhhh---hhhhhhHhhc-----ccceEe
Confidence 36889999999999999997 78999999999999999999887222 2344445544 498999
Q ss_pred EcCCHHHHHHHHHH---HHHhCCCCcEEEEecC--h----hhHHHHHHcCCCeEEcCc
Q 006034 484 MYTDKKRTIEAVQR---LRLAFPAIPIYARAQD--M----MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 484 ~~~dd~~n~~~~~~---~r~~~~~~~iia~~~~--~----~~~~~l~~~Gad~vi~p~ 532 (663)
+..|++.-..+... +..+.++ +++.-.++ + +..+.+.+.|+..+=.|-
T Consensus 64 ~v~~~~~v~~v~~~~~i~~~l~~g-~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 64 CVPDDDAVEAVLFGENILAGLRPG-KIIIDMSTISPETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp -SSSHHHHHHHHHCTTHGGGS-TT-EEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ecccchhhhhhhhhhHHhhccccc-eEEEecCCcchhhhhhhhhhhhhccceeeeeee
Confidence 99987654444443 4444444 66665553 3 344556677887776664
No 46
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.29 E-value=0.027 Score=57.70 Aligned_cols=129 Identities=15% Similarity=0.204 Sum_probs=72.0
Q ss_pred HHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhc-CCCh
Q 006034 244 AFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAIGPRV-GLTL 321 (663)
Q Consensus 244 AflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~K~~~~~~~~~~~-g~~~ 321 (663)
.++.|+++.|-+ +++.+.+.+-...++|+|-+.+|..+|++.+.+. ...++ +-+..++.--...++.-++. |.+.
T Consensus 177 PlliG~ilGNLD--~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIl-LGl~v~~vtG~~~~~~dr~~~g~~g 253 (314)
T TIGR00793 177 PFLVGFALGNLD--PELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGIL-LGVSVIILTGIPLILADKFIGGGDG 253 (314)
T ss_pred HHHHHHHHhcCC--HHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHH-HHHHHHHHHhHHHHHHHHHhcCCCC
Confidence 567889999864 4566777777889999999999999999998664 32222 21222333333445555555 3232
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHcCCCch--hhHHH-HHHHHHHHHhhhHHHHHHhH
Q 006034 322 QESVRIGLLLSQGGEFAFVVFSLANRLGVLPL--ELNKL-LIIVVVLSMALTPLLNEIGR 378 (663)
Q Consensus 322 r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~--~~~~~-lv~~vvlt~ii~pi~~~~~~ 378 (663)
.-.+..+. .-|--...=+.++.....+.+ +..+. +-.++++|.++.|++..+..
T Consensus 254 ~aG~A~ss---tAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~ 310 (314)
T TIGR00793 254 TAGIAASS---SAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWS 310 (314)
T ss_pred chhhHHHH---HHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333332 222222222233332222222 22233 33456778899999876543
No 47
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.19 E-value=0.0018 Score=56.63 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|+.|..=++.|. +.|.+++++..+.+..+ ....+. .+.. + ..+++++.|
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll----------~~gA~v~vis~~~~~~~----~~i~~~-~~~~-----~-~~l~~~~lV 64 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLL----------EAGAKVTVISPEIEFSE----GLIQLI-RREF-----E-EDLDGADLV 64 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHC----------CCTBEEEEEESSEHHHH----TSCEEE-ESS------G-GGCTTESEE
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCchhhhh----hHHHHH-hhhH-----H-HHHhhheEE
Confidence 3468999999999999999997 88999999998862222 233333 2222 2 447889999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChh
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM 515 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~ 515 (663)
+++++|.+.|-.+...+|+.+ ..+-.+++++
T Consensus 65 ~~at~d~~~n~~i~~~a~~~~---i~vn~~D~p~ 95 (103)
T PF13241_consen 65 FAATDDPELNEAIYADARARG---ILVNVVDDPE 95 (103)
T ss_dssp EE-SS-HHHHHHHHHHHHHTT---SEEEETT-CC
T ss_pred EecCCCHHHHHHHHHHHhhCC---EEEEECCCcC
Confidence 999999999999999999875 2344444444
No 48
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.16 E-value=0.0045 Score=64.56 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=83.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.|. ..|.+|.+.++++++.+.+.+.+...+. .+-+.+ -++++|.++
T Consensus 151 gk~v~IiG~G~iG~avA~~L~----------~~G~~V~v~~R~~~~~~~~~~~g~~~~~-----~~~l~~-~l~~aDiVi 214 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFS----------ALGARVFVGARSSADLARITEMGLIPFP-----LNKLEE-KVAEIDIVI 214 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCeeec-----HHHHHH-HhccCCEEE
Confidence 358999999999999999997 7889999999999887776665544332 222332 356899888
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecChh--hHHHHHHcCCCeEEcC-------chHHHHHHHHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM--HLLDLKKAGATDAILE-------NAETSLQLGSKLL 544 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~--~~~~l~~~Gad~vi~p-------~~~~~~~la~~~~ 544 (663)
.+++....| ....+.+.++.-++=.+.++. .-+..++.|+..+..| ...+|+.+++.+.
T Consensus 215 nt~P~~ii~---~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~~~~~ 282 (287)
T TIGR02853 215 NTIPALVLT---ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILANVLS 282 (287)
T ss_pred ECCChHHhC---HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHHHHHH
Confidence 888754222 223445555544555555542 2478899999998766 4455556655543
No 49
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.11 E-value=0.00064 Score=69.88 Aligned_cols=190 Identities=13% Similarity=0.045 Sum_probs=125.2
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhc-CCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA-GITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a-~i~~a~~v 481 (663)
+.++|+|-|..++...+.+..- .+.+.=.++++.|.+....... +-+...+-|+|+.+.|++. +-+..+++
T Consensus 2 ~~I~iI~dGi~Ak~fLe~v~~~-------~~~~~f~~vv~~~qe~~~~~~~~e~~~fh~fdaTs~~rl~~~~n~~~~~Af 74 (471)
T COG3400 2 KKIAIILDGIVAKNFLELVLRH-------YSNHNFYIVVVKNQESLIPKNYPETFAFHCFDATSSFRLLQVLNDEVSDAF 74 (471)
T ss_pred ceEEEEEecHHHHHHHHHHHHH-------hcCceEEEEEeechhhcccccCcceEEEEEeCCccHHHHHHHhhhHhhhhh
Confidence 4689999999999998877520 1344557788888776554332 3467788999999988764 66666766
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCc--EEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIP--IYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQ 559 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~--iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~ 559 (663)
+ ..-|-+++..+...+|..+++.. ++...+..++-+..++..+|.+=.|+ .+++..+..+ -.
T Consensus 75 i-~~qd~~et~~i~k~lr~~f~n~e~ei~~~~~~l~~Nee~~d~k~~lid~~~-----vL~~~F~~~L----------p~ 138 (471)
T COG3400 75 I-IIQDFKETRIIHKILRTHFKNMEVEISVKRDELENNEENKDEKLILIDEFE-----VLANKFISRL----------PN 138 (471)
T ss_pred e-ehhhHHHHHHHHHHHHHhccCcEEEEEEEeCCCccchhhcccceeecchHH-----HHHHHHHHhc----------CC
Confidence 4 45556788899999999988754 66777766777777888887665554 3443333211 00
Q ss_pred HHhcccccchhhhcccCCcchhcccccccchhhhhhhccCCCCCCCcccc------------------cCCCCCCCCcCC
Q 006034 560 LVRNSMEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEAEKTIPSTSNDDK------------------LSREDNTDTAGE 621 (663)
Q Consensus 560 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------------------~~~~~~~~~~~~ 621 (663)
+ ..+-.+.+.+.+|+.|-.....|+.+=+. -..+|.++.++|
T Consensus 139 I--------------------~~tp~~iGLgkGEImEI~vp~gSifaYrhi~sI~qk~~RIvl~YRN~klll~~~slvlq 198 (471)
T COG3400 139 I--------------------PSTPREIGLGKGEIMEIDVPFGSIFAYRHIGSIRQKEYRIVLLYRNDKLLLSTKSLVLQ 198 (471)
T ss_pred c--------------------cccchhcccccceEEEEecCCCchhhhhhhhhhhhheeEEEEEEECCEEEEeccceEec
Confidence 0 12223445555555555555555544111 123468999999
Q ss_pred CCCCceEEEeecCCC
Q 006034 622 DAKGVLYCELNGTNN 636 (663)
Q Consensus 622 ~~d~~~~~~~~~~~~ 636 (663)
|||++|-.|.+..-+
T Consensus 199 p~D~lLVvG~P~~ln 213 (471)
T COG3400 199 PRDILLVVGNPEILN 213 (471)
T ss_pred CCCEEEEeCChHHHH
Confidence 999999999887544
No 50
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.04 E-value=0.0043 Score=61.80 Aligned_cols=96 Identities=13% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC--ChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~--d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..++++|+|+|+++..=++.|. +.|.+|+||-. +++-.+...+....++..+.... .++.++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll----------~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~------dl~g~~ 87 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFL----------KKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKE------FIKDKH 87 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH------HhCCCc
Confidence 3458999999999999888887 78899999954 44433333334466666555432 246789
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
.|+++|+|.+.|-.++..+|+.+ ..+..+.+++.
T Consensus 88 LViaATdD~~vN~~I~~~a~~~~---~lvn~vd~p~~ 121 (223)
T PRK05562 88 LIVIATDDEKLNNKIRKHCDRLY---KLYIDCSDYKK 121 (223)
T ss_pred EEEECCCCHHHHHHHHHHHHHcC---CeEEEcCCccc
Confidence 99999999999999999999875 22334444443
No 51
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.98 E-value=0.0025 Score=61.44 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=70.0
Q ss_pred EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 406 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 406 viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
|+|+|. |.+|+.++++|. +++++|+++-+++++.+. ..+.+++.||..|++.++++ ++++|+++.+
T Consensus 1 I~V~GatG~vG~~l~~~L~----------~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~a-l~~~d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLL----------RRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAA-LKGADAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHH-HTTSSEEEEC
T ss_pred eEEECCCChHHHHHHHHHH----------HCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhh-hhhcchhhhh
Confidence 688996 999999999998 788999999999998887 67899999999999988774 3489999888
Q ss_pred cCC---H-HHHHHHHHHHHHhCCCCcEEE
Q 006034 485 YTD---K-KRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 485 ~~d---d-~~n~~~~~~~r~~~~~~~iia 509 (663)
.+. | .....++..+++.+.+ +++.
T Consensus 68 ~~~~~~~~~~~~~~~~a~~~~~~~-~~v~ 95 (183)
T PF13460_consen 68 AGPPPKDVDAAKNIIEAAKKAGVK-RVVY 95 (183)
T ss_dssp CHSTTTHHHHHHHHHHHHHHTTSS-EEEE
T ss_pred hhhhcccccccccccccccccccc-ccee
Confidence 873 3 2233344555665544 4443
No 52
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.97 E-value=0.0024 Score=69.14 Aligned_cols=100 Identities=16% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
..+++|+|+|++|+..++.+. ..|.+|+++|+++++.+.+.+..-..+..+..+++.+.++ +.++|.+|
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~----------~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~-l~~aDvVI 235 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMAN----------GLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDA-VKRADLLI 235 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHH-HccCCEEE
Confidence 345999999999999999997 7888999999999998887654323344556677777665 77999888
Q ss_pred EEc---CCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 483 IMY---TDKKRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 483 ~~~---~dd~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
.++ +.+..++......+.+.|+..++-.+-+
T Consensus 236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred EccccCCCCCCcCcCHHHHhcCCCCCEEEEEecC
Confidence 776 3333444445666777777445544433
No 53
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.96 E-value=0.0078 Score=64.75 Aligned_cols=113 Identities=18% Similarity=0.097 Sum_probs=86.7
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhcCCCCCc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.+++|+|+|++|+.+|+.|. +++ .+|.+.|+++++++++.+. ......=|+.|.+.|.++ +++.|
T Consensus 2 ~~ilviGaG~Vg~~va~~la----------~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~l-i~~~d 70 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLA----------QNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVAL-IKDFD 70 (389)
T ss_pred CcEEEECCchhHHHHHHHHH----------hCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHH-HhcCC
Confidence 46999999999999999997 444 8999999999999999775 488999999999988765 55669
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChh----hHHHHHHcCCCeEEc
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM----HLLDLKKAGATDAIL 530 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~----~~~~l~~~Gad~vi~ 530 (663)
.||.+.+-. .+..+...+-+.+. +.+-.+++++ ..+..+++|+..+..
T Consensus 71 ~VIn~~p~~-~~~~i~ka~i~~gv--~yvDts~~~~~~~~~~~~a~~Agit~v~~ 122 (389)
T COG1748 71 LVINAAPPF-VDLTILKACIKTGV--DYVDTSYYEEPPWKLDEEAKKAGITAVLG 122 (389)
T ss_pred EEEEeCCch-hhHHHHHHHHHhCC--CEEEcccCCchhhhhhHHHHHcCeEEEcc
Confidence 888888764 45555656666653 3444444433 577888999877654
No 54
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.95 E-value=0.004 Score=66.01 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=59.1
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|+|.|. |.+|+.+++.|. ++|++|+++.+++++.+.+...+..++.||.+|++.++++ ++.+|+|+-
T Consensus 2 kIlVtGatG~iG~~lv~~Ll----------~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-l~g~d~Vi~ 70 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQAL----------DEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPS-FKGVTAIID 70 (317)
T ss_pred EEEEECCCcHHHHHHHHHHH----------HCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHH-HCCCCEEEE
Confidence 5888985 999999999998 7899999999998877666667899999999999998765 456788876
Q ss_pred Ec
Q 006034 484 MY 485 (663)
Q Consensus 484 ~~ 485 (663)
+.
T Consensus 71 ~~ 72 (317)
T CHL00194 71 AS 72 (317)
T ss_pred CC
Confidence 54
No 55
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.87 E-value=0.0043 Score=67.69 Aligned_cols=111 Identities=16% Similarity=0.100 Sum_probs=80.0
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
|+|+|+|.+|+.+++.|.+ .... ++++.|+|+++.+.+.+ .......-|.+|++.|+++ ++++|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~---------~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~dv 70 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLAR---------RGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAEL-LRGCDV 70 (386)
T ss_dssp EEEE--SHHHHHHHHHHHC---------TTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHH-HTTSSE
T ss_pred CEEEcCcHHHHHHHHHHhc---------CCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHH-HhcCCE
Confidence 6899999999999999982 4444 89999999999988864 4688899999999998887 888898
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec-----ChhhHHHHHHcCCCeEEc
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-----DMMHLLDLKKAGATDAIL 530 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~-----~~~~~~~l~~~Gad~vi~ 530 (663)
||-+.+.. .|..++..+-+.+.+ .+- .. ..+..+..++.|...++.
T Consensus 71 Vin~~gp~-~~~~v~~~~i~~g~~--yvD-~~~~~~~~~~l~~~a~~~g~~~l~~ 121 (386)
T PF03435_consen 71 VINCAGPF-FGEPVARACIEAGVH--YVD-TSYVTEEMLALDEEAKEAGVTALPG 121 (386)
T ss_dssp EEE-SSGG-GHHHHHHHHHHHT-E--EEE-SS-HHHHHHHCHHHHHHTTSEEE-S
T ss_pred EEECCccc-hhHHHHHHHHHhCCC--eec-cchhHHHHHHHHHHHHhhCCEEEeC
Confidence 88887764 677788888888643 332 22 234556667778866654
No 56
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.77 E-value=0.013 Score=70.52 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=83.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-------------CEEEEeCChHHHHHHHhc--CCCEEEecCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-------------PFVAFDLNPSVVKESRKL--GFPILYGDASR 466 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-------------~vvvid~d~~~~~~~~~~--~~~vi~GD~~~ 466 (663)
..++|+|+|.|++|+..++.|.+ ..+. .|.+.|.++++++.+.+. +...+.-|.+|
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~---------~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D 638 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLAS---------VKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSD 638 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHh---------CcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCC
Confidence 46789999999999999999963 3333 389999999999887762 57789999999
Q ss_pred HHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH----HHHHHcCCC
Q 006034 467 PAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL----LDLKKAGAT 526 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~----~~l~~~Gad 526 (663)
.+-|.++ ++++|+||.+++.. .+..++..|-+.+.+ ++..-.+.+.. +..+++|+.
T Consensus 639 ~e~L~~~-v~~~DaVIsalP~~-~H~~VAkaAieaGkH--vv~eky~~~e~~~L~e~Ak~AGV~ 698 (1042)
T PLN02819 639 SESLLKY-VSQVDVVISLLPAS-CHAVVAKACIELKKH--LVTASYVSEEMSALDSKAKEAGIT 698 (1042)
T ss_pred HHHHHHh-hcCCCEEEECCCch-hhHHHHHHHHHcCCC--EEECcCCHHHHHHHHHHHHHcCCE
Confidence 9988764 55699999999984 678888888888754 44443443333 344556653
No 57
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.74 E-value=0.0061 Score=52.24 Aligned_cols=86 Identities=16% Similarity=0.180 Sum_probs=57.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC---CCEEEE-eCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WPFVAF-DLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~---~~vvvi-d~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
++.++|+|++|..+++.|. +.| .++.++ ++++++.+++.++ +..+... ++.++.+ ++|
T Consensus 1 kI~iIG~G~mg~al~~~l~----------~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~ad 63 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLL----------ASGIKPHEVIIVSSRSPEKAAELAKEYGVQATAD--DNEEAAQ-----EAD 63 (96)
T ss_dssp EEEEESTSHHHHHHHHHHH----------HTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESE--EHHHHHH-----HTS
T ss_pred CEEEECCCHHHHHHHHHHH----------HCCCCceeEEeeccCcHHHHHHHHHhhccccccC--ChHHhhc-----cCC
Confidence 3678999999999999997 667 889977 9999999998764 3333332 3555654 778
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
.++++.......-..... +...++ +++.
T Consensus 64 vvilav~p~~~~~v~~~i-~~~~~~-~~vi 91 (96)
T PF03807_consen 64 VVILAVKPQQLPEVLSEI-PHLLKG-KLVI 91 (96)
T ss_dssp EEEE-S-GGGHHHHHHHH-HHHHTT-SEEE
T ss_pred EEEEEECHHHHHHHHHHH-hhccCC-CEEE
Confidence 888888875432222222 445445 4443
No 58
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.73 E-value=0.065 Score=55.49 Aligned_cols=139 Identities=19% Similarity=0.329 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCcHHHHHHHhhhhccCCchh-hHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHH
Q 006034 228 GTSLLTQKLGFSDTLGAFLAGAILAETNFR-TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIK 306 (663)
Q Consensus 228 ~~~~l~~~~G~s~~lgAflaGl~l~~~~~~-~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K 306 (663)
....+++.++++..++-.++|++++..-.+ -+-.+.++.+.++-..++....|+++|++.+.+++.....+....++.-
T Consensus 6 ~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~~ 85 (273)
T TIGR00932 6 LAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLVP 85 (273)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999865211 0111345556677788888999999999999877655444433344443
Q ss_pred -HHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHh
Q 006034 307 -TLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMA 368 (663)
Q Consensus 307 -~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~i 368 (663)
.+..+...+..+.++.+++.+|..+++-. .-+...+..+.+..+.+....++...+++=+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~ 146 (273)
T TIGR00932 86 GVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTVLGILLFQDI 146 (273)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHHHHHHHHHHH
Confidence 33344456678999999999998777653 2333444455666565554444444444333
No 59
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=96.68 E-value=1.2 Score=47.51 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=75.7
Q ss_pred ccCchhHHHHHHHHHHhccC---CCcCC-chhHH----HHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 006034 5 ILCRSQILGFFFAGIVLNQL---GIIRN-LTDVK----VLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 76 (663)
Q Consensus 5 rl~lP~ivg~ilaGillGp~---glv~~-~~~l~----~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~ 76 (663)
+.++++.+--++.|+++++. +..+. .+.++ .+-++|+++ .|.+++++++.+.+.+.+......+..++
T Consensus 28 ~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~~ 103 (335)
T TIGR00698 28 DPALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTSTF 103 (335)
T ss_pred cCCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 45788888889999999972 22111 22333 566777665 59999999999999888776666555555
Q ss_pred HHHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHH---HHHHhhcCCCCChhHHHHHHHHHH
Q 006034 77 LAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFV---LQLLAEKGELPTRFGSATLGILLL 153 (663)
Q Consensus 77 ~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv---~~il~~~~~~~~~~g~~~l~~~~~ 153 (663)
.....+ | .-.++ .+...+.++++-.+....+-+ .+.++.+ ++...++++.-.+
T Consensus 104 ~~~~~~--------g----~k~l~--------l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~----~~~~a~ava~V~l 159 (335)
T TIGR00698 104 FLTVFL--------G----SSRLK--------LDKQMSILLGAGSSICGAAAVAAIEPVIKAE----KEKVSVAIAIVVI 159 (335)
T ss_pred HHHHHH--------H----HHHhC--------CChhHHHHHHcchhHHHHHHHHHhccccCCC----ccceeeeehHHHH
Confidence 433222 1 12455 567778888765555433333 3444432 2222334444444
Q ss_pred HHHHHHHHHH
Q 006034 154 QDIAVVPLLV 163 (663)
Q Consensus 154 ~Di~~i~~l~ 163 (663)
-+..+++++-
T Consensus 160 fgt~am~l~P 169 (335)
T TIGR00698 160 FGTTGIFLYP 169 (335)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 60
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.68 E-value=0.0081 Score=60.47 Aligned_cols=88 Identities=19% Similarity=0.325 Sum_probs=69.3
Q ss_pred EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH--HHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 406 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 406 viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~--~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
|+|+|. |++|+.+++.|. +.+++|.++-+|+. ..+.+++.|..++.+|..|++.|.++ ++.+|.|+
T Consensus 1 I~V~GatG~~G~~v~~~L~----------~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~a-l~g~d~v~ 69 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALL----------SAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAA-LKGVDAVF 69 (233)
T ss_dssp EEEETTTSHHHHHHHHHHH----------HTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHH-HTTCSEEE
T ss_pred CEEECCccHHHHHHHHHHH----------hCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHH-HcCCceEE
Confidence 578886 999999999998 68999999999874 47778889999999999999999764 67889999
Q ss_pred EEcC---CHH--HHHHHHHHHHHhCCC
Q 006034 483 IMYT---DKK--RTIEAVQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~---dd~--~n~~~~~~~r~~~~~ 504 (663)
++++ +.+ .-..++..|++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~li~Aa~~agVk 96 (233)
T PF05368_consen 70 SVTPPSHPSELEQQKNLIDAAKAAGVK 96 (233)
T ss_dssp EESSCSCCCHHHHHHHHHHHHHHHT-S
T ss_pred eecCcchhhhhhhhhhHHHhhhccccc
Confidence 9998 432 333467778887744
No 61
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.65 E-value=0.016 Score=60.90 Aligned_cols=110 Identities=16% Similarity=0.180 Sum_probs=74.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|..+++.|. +.|++|.+.|+++++++.+.+.+.... .+.+-+.+ ..+++|.++++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~----------~~g~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~~~-~~~~~dvIi~~ 66 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLA----------KRGHDCVGYDHDQDAVKAMKEDRTTGV----ANLRELSQ-RLSAPRVVWVM 66 (298)
T ss_pred EEEEEcchHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCccc----CCHHHHHh-hcCCCCEEEEE
Confidence 5889999999999999998 789999999999999999988654332 33333322 34689999999
Q ss_pred cCCHHHHHHHHHH-HHHhCCCCcEEEEecCh------hhHHHHHHcCCCeEEcC
Q 006034 485 YTDKKRTIEAVQR-LRLAFPAIPIYARAQDM------MHLLDLKKAGATDAILE 531 (663)
Q Consensus 485 ~~dd~~n~~~~~~-~r~~~~~~~iia~~~~~------~~~~~l~~~Gad~vi~p 531 (663)
++++ ..-.++.. +..+.++ +++.-..+. +..+.+++.|+..+=.|
T Consensus 67 vp~~-~~~~v~~~l~~~l~~g-~ivid~st~~~~~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 67 VPHG-IVDAVLEELAPTLEKG-DIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred cCch-HHHHHHHHHHhhCCCC-CEEEECCCCCcccHHHHHHHHHhcCCeEEecC
Confidence 9987 33333333 3334444 566554332 23335567787655444
No 62
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.63 E-value=0.0094 Score=63.65 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=69.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh---------------------HHH----HHHHh-
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP---------------------SVV----KESRK- 454 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~---------------------~~~----~~~~~- 454 (663)
.+.+|+|+|.|.+|..+++.|. ..|. ++++||.|. .++ +.+++
T Consensus 23 ~~~~VlIiG~GglGs~va~~La----------~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i 92 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALV----------RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI 92 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH
Confidence 3468999999999999999998 6787 799999985 122 22222
Q ss_pred -cC--CCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 455 -LG--FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 455 -~~--~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
.+ ...+..|.+. +.+++. ++++|.||.++++.+.+..+...+++.+.. .|.+
T Consensus 93 np~v~i~~~~~~~~~-~~~~~~-~~~~DlVid~~D~~~~r~~in~~~~~~~ip-~i~~ 147 (338)
T PRK12475 93 NSEVEIVPVVTDVTV-EELEEL-VKEVDLIIDATDNFDTRLLINDLSQKYNIP-WIYG 147 (338)
T ss_pred CCCcEEEEEeccCCH-HHHHHH-hcCCCEEEEcCCCHHHHHHHHHHHHHcCCC-EEEE
Confidence 12 3345666654 344443 788999999999999999998999987633 3444
No 63
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.62 E-value=0.086 Score=61.16 Aligned_cols=113 Identities=20% Similarity=0.231 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCchhh-HHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHH
Q 006034 223 LLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRT-QIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 301 (663)
Q Consensus 223 l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~~-~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~ 301 (663)
+........++..+|+++++|=.++|++++....+- .-.+.++.+.++-+.++.+.+|+++|++.++.....++.+...
T Consensus 14 l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~ 93 (621)
T PRK03562 14 LGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGAL 93 (621)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 344445667899999999999999999998642110 1123466777888888899999999999997665444333333
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhh
Q 006034 302 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGG 335 (663)
Q Consensus 302 ~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G 335 (663)
-++.-.+..+..++..|+++..++.+|..++.-.
T Consensus 94 qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 94 QMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3333344445556678899999999988765443
No 64
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.60 E-value=0.006 Score=66.71 Aligned_cols=101 Identities=14% Similarity=0.239 Sum_probs=68.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|++|+.+++.++ ..|.+|+++|.|+.+...+...|+.+. + ++++ ++.+|.+
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr----------~~Ga~ViV~d~dp~ra~~A~~~G~~v~-----~---l~ea-l~~aDVV 271 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLR----------GLGARVIVTEVDPICALQAAMDGFRVM-----T---MEEA-AELGDIF 271 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEEcCCchhhHHHHhcCCEec-----C---HHHH-HhCCCEE
Confidence 3467999999999999999998 789999999999998877766676543 1 1222 3579988
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCc--EEEEecChhhHHHHHHc
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIP--IYARAQDMMHLLDLKKA 523 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~--iia~~~~~~~~~~l~~~ 523 (663)
+.++++. ++.-....+.+.+... .+.+.+++-+.+.|++.
T Consensus 272 I~aTG~~--~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~ 313 (425)
T PRK05476 272 VTATGNK--DVITAEHMEAMKDGAILANIGHFDNEIDVAALEEL 313 (425)
T ss_pred EECCCCH--HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhc
Confidence 8888763 3333344555555422 22344454455555554
No 65
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.58 E-value=0.0051 Score=67.68 Aligned_cols=102 Identities=15% Similarity=0.285 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|++|+.+|+.++ ..|.+|++.|.|+.+...+...|+.+.. +.++ ++++|.+
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~----------a~Ga~ViV~e~dp~~a~~A~~~G~~~~~--------leel-l~~ADIV 313 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALR----------GFGARVVVTEIDPICALQAAMEGYQVVT--------LEDV-VETADIF 313 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhHHHHHhcCceecc--------HHHH-HhcCCEE
Confidence 3468999999999999999997 7899999999999887655555655431 2222 4689988
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEE--EEecChhhHHHHHHcC
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIY--ARAQDMMHLLDLKKAG 524 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~ii--a~~~~~~~~~~l~~~G 524 (663)
+.++++ .++.-....+.+.|+..++ +|-+++...+.++..+
T Consensus 314 I~atGt--~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~ 356 (476)
T PTZ00075 314 VTATGN--KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYP 356 (476)
T ss_pred EECCCc--ccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcC
Confidence 888764 3444445666777764432 2333334445555544
No 66
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.58 E-value=0.021 Score=60.08 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=72.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|..+++.|. +.|+++++.|+++++++.+.+.+.... .+.+++.+++ +++|.|+++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~----------~~g~~v~v~dr~~~~~~~~~~~g~~~~---~s~~~~~~~~--~~advVi~~ 66 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLR----------EDGHEVVGYDVNQEAVDVAGKLGITAR---HSLEELVSKL--EAPRTIWVM 66 (299)
T ss_pred EEEEEcccHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHCCCeec---CCHHHHHHhC--CCCCEEEEE
Confidence 4789999999999999998 789999999999999998877664321 2223444433 357999999
Q ss_pred cCCHHHHHHHHHHHHH-hCCCCcEEEEecC------hhhHHHHHHcCCCeEE
Q 006034 485 YTDKKRTIEAVQRLRL-AFPAIPIYARAQD------MMHLLDLKKAGATDAI 529 (663)
Q Consensus 485 ~~dd~~n~~~~~~~r~-~~~~~~iia~~~~------~~~~~~l~~~Gad~vi 529 (663)
+++++....++..+.. +.++ +++.-..+ .+..+.+++.|++.+=
T Consensus 67 vp~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 67 VPAGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred ecCchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 9987544443333333 3344 56654422 2334455677876543
No 67
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.54 E-value=0.0067 Score=65.93 Aligned_cols=82 Identities=16% Similarity=0.224 Sum_probs=58.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|++|+.+++.++ ..|.+|+++|.|+.+...+...|+.+.. ++++ ++++|.+
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak----------~~Ga~ViV~d~dp~r~~~A~~~G~~v~~--------leea-l~~aDVV 254 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRAR----------GMGARVIVTEVDPIRALEAAMDGFRVMT--------MEEA-AKIGDIF 254 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHh----------hCcCEEEEEeCChhhHHHHHhcCCEeCC--------HHHH-HhcCCEE
Confidence 3568999999999999999997 7899999999999987777777765431 1222 4678988
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCC
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~ 504 (663)
|.++++. ++.-....+.+.+.
T Consensus 255 ItaTG~~--~vI~~~~~~~mK~G 275 (406)
T TIGR00936 255 ITATGNK--DVIRGEHFENMKDG 275 (406)
T ss_pred EECCCCH--HHHHHHHHhcCCCC
Confidence 8887753 33323344444444
No 68
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.52 E-value=0.026 Score=59.39 Aligned_cols=111 Identities=22% Similarity=0.260 Sum_probs=73.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|+.+++.|. +.|+++.+.|+++++++.+.+.+..+. .+..++.++ .+++|.++++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~----------~~g~~v~v~dr~~~~~~~~~~~g~~~~---~~~~e~~~~--~~~~dvvi~~ 66 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLL----------RGGHEVVGYDRNPEAVEALAEEGATGA---DSLEELVAK--LPAPRVVWLM 66 (301)
T ss_pred EEEEEcccHHHHHHHHHHH----------HCCCeEEEEECCHHHHHHHHHCCCeec---CCHHHHHhh--cCCCCEEEEE
Confidence 5889999999999999997 789999999999999999887765432 122334433 3457888888
Q ss_pred cCCHHHHHHHHHHHH-HhCCCCcEEEEec--Ch----hhHHHHHHcCCCeEEcC
Q 006034 485 YTDKKRTIEAVQRLR-LAFPAIPIYARAQ--DM----MHLLDLKKAGATDAILE 531 (663)
Q Consensus 485 ~~dd~~n~~~~~~~r-~~~~~~~iia~~~--~~----~~~~~l~~~Gad~vi~p 531 (663)
.++++....+...+. .+.++ .++.-.. ++ +..+.+++.|+..+=.|
T Consensus 67 v~~~~~~~~v~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 67 VPAGEITDATIDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred ecCCcHHHHHHHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 888643333333333 33444 4554432 22 23456677898876444
No 69
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.50 E-value=0.028 Score=59.00 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=75.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|+.|+.+++.|. ..|.+|.++|+++++.+.+.+.+...+. .+.+.+ -+.++|.+|
T Consensus 152 g~kvlViG~G~iG~~~a~~L~----------~~Ga~V~v~~r~~~~~~~~~~~G~~~~~-----~~~l~~-~l~~aDiVI 215 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLK----------ALGANVTVGARKSAHLARITEMGLSPFH-----LSELAE-EVGKIDIIF 215 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHcCCeeec-----HHHHHH-HhCCCCEEE
Confidence 468999999999999999997 7889999999999887777776655432 222322 356899888
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhH--HHHHHcCCCeEEcC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHL--LDLKKAGATDAILE 531 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~--~~l~~~Gad~vi~p 531 (663)
.+++.... .....+.+.|+.-++=.+.++... +..++.|+..+-.+
T Consensus 216 ~t~p~~~i---~~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 216 NTIPALVL---TKEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALLAP 263 (296)
T ss_pred ECCChhhh---hHHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEEEC
Confidence 87764321 223344556665555555554322 45677888877433
No 70
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.49 E-value=0.014 Score=59.51 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=56.5
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCC-HHHHHhcCCCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASR-PAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~-~~~L~~a~i~~ 477 (663)
..++++|+|. |.+|+.+++.|. +.|++|+++.+++++.+.... .+..++.||.+| .+.+.++-..+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~----------~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLL----------AKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHH----------hCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 3467999995 999999999997 679999999998887654432 357889999998 35554431147
Q ss_pred CcEEEEEcC
Q 006034 478 PKAVMIMYT 486 (663)
Q Consensus 478 a~~vv~~~~ 486 (663)
+|.++..++
T Consensus 86 ~d~vi~~~g 94 (251)
T PLN00141 86 SDAVICATG 94 (251)
T ss_pred CCEEEECCC
Confidence 898887764
No 71
>PLN02494 adenosylhomocysteinase
Probab=96.47 E-value=0.007 Score=66.49 Aligned_cols=101 Identities=17% Similarity=0.305 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|++|+.+++.++ ..|.+|+++|.|+.+...+...|+.+. + -++. ++++|.+
T Consensus 253 aGKtVvViGyG~IGr~vA~~ak----------a~Ga~VIV~e~dp~r~~eA~~~G~~vv--~--leEa-----l~~ADVV 313 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMK----------AAGARVIVTEIDPICALQALMEGYQVL--T--LEDV-----VSEADIF 313 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhhHHHHhcCCeec--c--HHHH-----HhhCCEE
Confidence 3568999999999999999997 789999999999988777777777654 1 1223 3568988
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEE--EEecChhhHHHHHHc
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIY--ARAQDMMHLLDLKKA 523 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~ii--a~~~~~~~~~~l~~~ 523 (663)
+.++++. ++......+.+.++..++ ++.+++-+...|.++
T Consensus 314 I~tTGt~--~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 314 VTTTGNK--DIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred EECCCCc--cchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 7766653 333345566666653322 233334455555443
No 72
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.45 E-value=0.0034 Score=58.74 Aligned_cols=107 Identities=19% Similarity=0.212 Sum_probs=73.1
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC----HHHHH--hcCCCCCc
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR----PAVLL--SAGITSPK 479 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~----~~~L~--~a~i~~a~ 479 (663)
|.|+|.|.+|..+|-.|. +.|++|.++.+.+ +.+..++.+..+...+..+ +.... ....+.+|
T Consensus 1 I~I~G~GaiG~~~a~~L~----------~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 69 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLA----------QAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYD 69 (151)
T ss_dssp EEEESTSHHHHHHHHHHH----------HTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTES
T ss_pred CEEECcCHHHHHHHHHHH----------HCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCc
Confidence 689999999999999997 7899999999999 8888887776665544100 00000 34567899
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHc
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKA 523 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~ 523 (663)
.+++++...+..-.+-...+...++..++...|-..+.+.+.+.
T Consensus 70 ~viv~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~ 113 (151)
T PF02558_consen 70 LVIVAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEY 113 (151)
T ss_dssp EEEE-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCH
T ss_pred EEEEEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHH
Confidence 99999877543333333334445555677777777777777655
No 73
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=96.43 E-value=0.0074 Score=62.91 Aligned_cols=87 Identities=20% Similarity=0.289 Sum_probs=65.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
-+.++|||||..|+-+|+.++ ..|.+|+|-|.||=++-++.-+|+.|.. +++| .+.+|.+|
T Consensus 209 GK~vVV~GYG~vGrG~A~~~r----------g~GA~ViVtEvDPI~AleA~MdGf~V~~--------m~~A-a~~gDifi 269 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLR----------GMGARVIVTEVDPIRALEAAMDGFRVMT--------MEEA-AKTGDIFV 269 (420)
T ss_pred CceEEEecccccchHHHHHhh----------cCCCeEEEEecCchHHHHHhhcCcEEEE--------hHHh-hhcCCEEE
Confidence 457999999999999999998 8999999999999998888888999986 2222 35678888
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
.+|++. ++.-....+++... -|++.+
T Consensus 270 T~TGnk--dVi~~eh~~~MkDg-aIl~N~ 295 (420)
T COG0499 270 TATGNK--DVIRKEHFEKMKDG-AILANA 295 (420)
T ss_pred EccCCc--CccCHHHHHhccCC-eEEecc
Confidence 888773 44444455555322 455543
No 74
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.43 E-value=0.022 Score=59.86 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=69.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC------HHHHHhcCCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR------PAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~------~~~L~~a~i~~a 478 (663)
+|.|+|.|.+|..++..|. +.|++|.++++ +++.+.+.+.+..+-..+... .+...+ ..+.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~----------~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 69 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLL----------EAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEE-LTGPF 69 (305)
T ss_pred eEEEECCCHHHHHHHHHHH----------HCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHH-ccCCC
Confidence 5899999999999999998 67999999999 888888887665543332110 001112 23789
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK 522 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~ 522 (663)
|.+++++.....+-.+....+...++..++...|--.+.+.+++
T Consensus 70 d~vilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~ 113 (305)
T PRK12921 70 DLVILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP 113 (305)
T ss_pred CEEEEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH
Confidence 99999988754433333333445556456666665554555554
No 75
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.41 E-value=0.61 Score=49.01 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=70.1
Q ss_pred ccCchhHHHHHHHHHHhcc--CCCcCCc-hhH----HHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 006034 5 ILCRSQILGFFFAGIVLNQ--LGIIRNL-TDV----KVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 77 (663)
Q Consensus 5 rl~lP~ivg~ilaGillGp--~glv~~~-~~l----~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~ 77 (663)
...+++.+--++.|+++++ ++..+.. +.+ +.+-++|+++ .|.+++++++.+.+.+........+..++.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3567888888999999997 3432221 222 4667777765 589999999999998877777776666665
Q ss_pred HHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhH---HHHHHHHhh
Q 006034 78 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSS---AFVLQLLAE 135 (663)
Q Consensus 78 ~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~---~vv~~il~~ 135 (663)
....+ | .-+++ .+...+.+++.-.+.... ..+.+.++.
T Consensus 99 ~~~~l--------g----~r~~~--------l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 99 LTYWL--------G----RRLFG--------LDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred HHHHH--------H----HHHhC--------CCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 44332 1 24555 577788888866665433 333445544
No 76
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.37 E-value=0.0067 Score=56.89 Aligned_cols=112 Identities=13% Similarity=0.055 Sum_probs=70.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|.|.+|+.+++.|. +. +.++.+.|+++++.+.+.+. +...+.-+.+|.+- + ++++|.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~----------~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~Dv 84 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALA----------ELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEE---L-LAEADL 84 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhh---c-cccCCE
Confidence 467999999999999999997 55 47899999999988776543 22111123333322 2 689999
Q ss_pred EEEEcCCHHH---HHHHHHHHHHhCCCCcEEEEec-Ch---hhHHHHHHcCCCeEEcCc
Q 006034 481 VMIMYTDKKR---TIEAVQRLRLAFPAIPIYARAQ-DM---MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 481 vv~~~~dd~~---n~~~~~~~r~~~~~~~iia~~~-~~---~~~~~l~~~Gad~vi~p~ 532 (663)
++.+++++.. +.... .....++ +++.-.+ .+ +-.+.+++.|+ .+++-.
T Consensus 85 vi~~~~~~~~~~~~~~~~--~~~~~~~-~~v~D~~~~~~~~~l~~~~~~~g~-~~v~g~ 139 (155)
T cd01065 85 IINTTPVGMKPGDELPLP--PSLLKPG-GVVYDVVYNPLETPLLKEARALGA-KTIDGL 139 (155)
T ss_pred EEeCcCCCCCCCCCCCCC--HHHcCCC-CEEEEcCcCCCCCHHHHHHHHCCC-ceeCCH
Confidence 9999988653 22111 1223344 3333222 22 45567788888 355554
No 77
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.36 E-value=0.22 Score=52.74 Aligned_cols=128 Identities=15% Similarity=0.203 Sum_probs=70.0
Q ss_pred HHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhh-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 006034 243 GAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAIGPRVGLTL 321 (663)
Q Consensus 243 gAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~K~~~~~~~~~~~g~~~ 321 (663)
.+++.|+.+.|. .+++++...+--.+++|++-+..|..+|++++... ++.++ +....++......++..++++...
T Consensus 178 lplliG~~lgnl--~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~Gil-L~~~~~~~t~~~~~~~~Rl~~~~~ 254 (326)
T PRK05274 178 LPLLVGFILGNL--DPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGIL-LGVAVVAVTGIPLYLADRLIGGGN 254 (326)
T ss_pred HHHHHHHHHHhH--HHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchh-hhhhHhhccchhhHhHhheeecCC
Confidence 688899999983 34455555555567999999999999999998654 44333 223334444554556667764322
Q ss_pred H-HHHHHHHhhhhhhhHHHHHHHHHHHcC---CCchhhHHHHHHHHHHHHhhhHHHHHH
Q 006034 322 Q-ESVRIGLLLSQGGEFAFVVFSLANRLG---VLPLELNKLLIIVVVLSMALTPLLNEI 376 (663)
Q Consensus 322 r-~~~~~g~~l~~~G~~~lvla~~a~~~g---~i~~~~~~~lv~~vvlt~ii~pi~~~~ 376 (663)
. ..+..+. .-|.-.-.-+.++.-.. ...+.....+..++++|+++.|++..+
T Consensus 255 g~~g~a~~t---taG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~ 310 (326)
T PRK05274 255 GVAGAAAGS---TAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAW 310 (326)
T ss_pred CcchHHHHH---HHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1111111 11111111111222222 223333334444566788999988763
No 78
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=96.33 E-value=0.047 Score=53.25 Aligned_cols=128 Identities=21% Similarity=0.297 Sum_probs=84.3
Q ss_pred HHHHHHHHHhccCCCcCCchhHHHHHHHHHHHHHHHHhhcCChH-----HHHHhhhHHHHHHHHHHHHHHHHHHhhhCCC
Q 006034 12 LGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLA-----RLKALAKFAFGMGLTQVVLSTLAFTAFELPP 86 (663)
Q Consensus 12 vg~ilaGillGp~glv~~~~~l~~l~~lgl~lllF~~Glel~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (663)
++.+++|+++|.+...+ .+..+...++.+.+++|.+|+++.-+ .+|+.+++.+.+.+..++.+.+.+..+
T Consensus 2 l~~li~Gi~lG~~~~~~-~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~---- 76 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLA---- 76 (191)
T ss_pred eeeHHHHHHHHHHhccc-ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----
Confidence 45678999999865443 33337899999999999999998543 566677888888877777666554433
Q ss_pred CCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 006034 87 NGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLLVIL 165 (663)
Q Consensus 87 ~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i~ 165 (663)
..+++ +++.+++.++.-..==|. .-.++.|. .+.+.|.+++=.-++-+++++++.-++
T Consensus 77 ---------~~ll~--------~~~~~~lav~sG~GwYSl--sg~~i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 77 ---------SLLLG--------LSLKESLAVASGFGWYSL--SGVLITQL--YGPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred ---------HHHhc--------CCHHHHHHHHccCcHHHh--HHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556 678888777754332111 11223332 245778877777777777776655443
No 79
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.32 E-value=1.8 Score=45.46 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=61.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccccccccccC
Q 006034 31 TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRS 110 (663)
Q Consensus 31 ~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~ 110 (663)
..++....+.+.+++|..|+.++.+++++..|+.... +.+...++++.-.+++ | + ..++ +
T Consensus 34 ~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~v-ligl~~qfvlmPlla~------~--~-~~~~----------~ 93 (319)
T COG0385 34 GWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLV-LIGLAAQFVLMPLLAL------L--L-AKLF----------P 93 (319)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHH-HHHHHHHHHHHHHHHH------H--H-HHHc----------C
Confidence 3455567899999999999999999998876654332 2234444444333311 1 1 1222 3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHH
Q 006034 111 IDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAVVPLL 162 (663)
Q Consensus 111 ~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~i~~l 162 (663)
....+..|.++..+.|+.+....... +.+.++ -..+..+.++.++++++.
T Consensus 94 l~~~l~~Gl~ll~~~Pggv~S~~~t~-lAkGnV-alsV~~tsvStll~~f~t 143 (319)
T COG0385 94 LPPELAVGLLLLGCCPGGVASNAMTY-LAKGNV-ALSVCSTSVSTLLGPFLT 143 (319)
T ss_pred CCHHHHHhHHheeeCCCchhHHHHHH-HhcCcH-HHHHHHHHHHHHHHHHHH
Confidence 45567777777665555554433221 112222 234455566666666554
No 80
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.31 E-value=0.11 Score=54.63 Aligned_cols=109 Identities=19% Similarity=0.170 Sum_probs=76.5
Q ss_pred HhCCcHHHHHHHhhhhccC-C-chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006034 235 KLGFSDTLGAFLAGAILAE-T-NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 312 (663)
Q Consensus 235 ~~G~s~~lgAflaGl~l~~-~-~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~ 312 (663)
..++++.+=|.+.|++++| . ...++.+.-++.-...++.+=-+..|.++++.++.+..+..+.+..+.+..-+..+++
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~ 102 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYW 102 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999998 4 3444444444444567888888999999999999764332233344444455555566
Q ss_pred HH-hhcCCChHHHHHHHHhhhhhhhHHHHHHH
Q 006034 313 IG-PRVGLTLQESVRIGLLLSQGGEFAFVVFS 343 (663)
Q Consensus 313 ~~-~~~g~~~r~~~~~g~~l~~~G~~~lvla~ 343 (663)
.+ +++|++++.+..++.+.+-=|.-+++...
T Consensus 103 lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a 134 (305)
T PF03601_consen 103 LGRRLFGLDRKLAILIAAGTSICGASAIAATA 134 (305)
T ss_pred HHHHHhCCCHHHHHHHHhhcccchHHHHHHHc
Confidence 66 99999999999999886666655544443
No 81
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.31 E-value=0.032 Score=57.97 Aligned_cols=113 Identities=13% Similarity=0.027 Sum_probs=75.4
Q ss_pred EEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcC-----CCC-C
Q 006034 406 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG-----ITS-P 478 (663)
Q Consensus 406 viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~-----i~~-a 478 (663)
++|.|. |.+|+.+++.|. +.|++|.++.+|+++.+ ..+..++.+|.+|++.|+++= ++. +
T Consensus 2 ilVtGatG~iG~~vv~~L~----------~~g~~V~~~~R~~~~~~---~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQ----------AASVPFLVASRSSSSSA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred EEEEcCCChHHHHHHHHHH----------hCCCcEEEEeCCCcccc---CCCCccccccCCCHHHHHHHHhcccCcCCce
Confidence 678887 999999999997 78999999999988643 346778899999999998752 344 8
Q ss_pred cEEEEEcCCH----HHHHHHHHHHHHhCCCCcEEEEec---------ChhhHHHHHHc-CCCeE-EcCc
Q 006034 479 KAVMIMYTDK----KRTIEAVQRLRLAFPAIPIYARAQ---------DMMHLLDLKKA-GATDA-ILEN 532 (663)
Q Consensus 479 ~~vv~~~~dd----~~n~~~~~~~r~~~~~~~iia~~~---------~~~~~~~l~~~-Gad~v-i~p~ 532 (663)
|.++.+.++. +.-..+...|++.+.+ +++-... .....+.+++. |++.+ +.|.
T Consensus 69 d~v~~~~~~~~~~~~~~~~~i~aa~~~gv~-~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~ 136 (285)
T TIGR03649 69 SAVYLVAPPIPDLAPPMIKFIDFARSKGVR-RFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPT 136 (285)
T ss_pred eEEEEeCCCCCChhHHHHHHHHHHHHcCCC-EEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEecc
Confidence 8887665531 1222345567777644 4433221 01123455565 77764 4554
No 82
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.26 E-value=0.014 Score=63.71 Aligned_cols=68 Identities=15% Similarity=0.308 Sum_probs=55.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|++|+.+++.++ ..|.+|+++|.|+.+.+.+.+.|..++. .++. ++.+|.+
T Consensus 201 ~GktVvViG~G~IG~~va~~ak----------~~Ga~ViV~d~d~~R~~~A~~~G~~~~~----~~e~-----v~~aDVV 261 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLR----------GQGARVIVTEVDPICALQAAMEGYEVMT----MEEA-----VKEGDIF 261 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECChhhHHHHHhcCCEEcc----HHHH-----HcCCCEE
Confidence 3568999999999999999997 7899999999999999988888876542 1222 3578999
Q ss_pred EEEcCCH
Q 006034 482 MIMYTDK 488 (663)
Q Consensus 482 v~~~~dd 488 (663)
+.++++.
T Consensus 262 I~atG~~ 268 (413)
T cd00401 262 VTTTGNK 268 (413)
T ss_pred EECCCCH
Confidence 8888764
No 83
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.23 E-value=0.23 Score=57.47 Aligned_cols=108 Identities=18% Similarity=0.272 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHhhhhccCCchh--hHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHH
Q 006034 225 TVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR--TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGL 302 (663)
Q Consensus 225 ~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~--~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~ 302 (663)
.......++..+|+++++|=.++|++++....+ ++ .+.+..+.++-+.++.+.+|+++|++.+++....++.+....
T Consensus 16 ~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~ 94 (601)
T PRK03659 16 AAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQ 94 (601)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 333455688899999999999999999864211 11 234556677888888888999999999876533333222222
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHhhhh
Q 006034 303 IIIKTLIISAIGPRVGLTLQESVRIGLLLSQ 333 (663)
Q Consensus 303 ~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~ 333 (663)
++.-.+..+......|+++..++.+|..++.
T Consensus 95 v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 95 VLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2222322333444568899988888865443
No 84
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.22 E-value=0.17 Score=58.16 Aligned_cols=129 Identities=18% Similarity=0.174 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHhCCcHHHHHHHhhhhccCCchhh-HHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHH
Q 006034 223 LLTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFRT-QIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAG 301 (663)
Q Consensus 223 l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~~-~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~ 301 (663)
+.....+..++..++++.++|=.++|++++....+. .-.+.++.+.++-..++.+..|+++|++.+.+.....+...+.
T Consensus 15 l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~ 94 (558)
T PRK10669 15 LVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIA 94 (558)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHH
Confidence 444555667888999999999999999998652211 0113455567777777888889999999886543322222222
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHcCCCch
Q 006034 302 LIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRLGVLPL 353 (663)
Q Consensus 302 ~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~g~i~~ 353 (663)
-++.-.+..+......++++.+++.+|..++.-+. .++.....+.|..+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s 144 (558)
T PRK10669 95 QIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDS 144 (558)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccC
Confidence 22223333444556678999999999886666332 333444455565544
No 85
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.20 E-value=0.017 Score=60.08 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=53.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|.|+|.|.+|..+++.|. +.|++|.++|++++..+.+.+.+.... ..++.+ .++++|.++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~----------~~g~~V~~~d~~~~~~~~a~~~g~~~~--~~~~~~-----~~~~aDlVila 64 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLR----------SLGHTVYGVSRRESTCERAIERGLVDE--ASTDLS-----LLKDCDLVILA 64 (279)
T ss_pred eEEEEeecHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHCCCccc--ccCCHh-----HhcCCCEEEEc
Confidence 5889999999999999997 678999999999999888877653210 112222 25789999999
Q ss_pred cCCHHH
Q 006034 485 YTDKKR 490 (663)
Q Consensus 485 ~~dd~~ 490 (663)
++.+..
T Consensus 65 vp~~~~ 70 (279)
T PRK07417 65 LPIGLL 70 (279)
T ss_pred CCHHHH
Confidence 997643
No 86
>PLN02688 pyrroline-5-carboxylate reductase
Probab=96.19 E-value=0.042 Score=56.63 Aligned_cols=106 Identities=20% Similarity=0.212 Sum_probs=65.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC----CEEEE-eCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW----PFVAF-DLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~----~vvvi-d~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
+|-++|+|++|..+++.|. +.|+ ++++. ++++++.+.+.+.|..+. .+..+. ++++|
T Consensus 2 kI~~IG~G~mG~a~a~~L~----------~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~---~~~~e~-----~~~aD 63 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLV----------ASGVVPPSRISTADDSNPARRDVFQSLGVKTA---ASNTEV-----VKSSD 63 (266)
T ss_pred eEEEECCcHHHHHHHHHHH----------HCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe---CChHHH-----HhcCC
Confidence 4789999999999999997 5565 78888 999999888887765432 122222 45789
Q ss_pred EEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHHcCCCeEE
Q 006034 480 AVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKKAGATDAI 529 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~~Gad~vi 529 (663)
.++.+++++ ....+...++. ..++..++.-....+....-+..|...++
T Consensus 64 vVil~v~~~-~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vv 113 (266)
T PLN02688 64 VIILAVKPQ-VVKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGRRVV 113 (266)
T ss_pred EEEEEECcH-HHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEE
Confidence 999999643 33333333333 34442244443444433344445554443
No 87
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=96.13 E-value=0.01 Score=55.59 Aligned_cols=107 Identities=15% Similarity=0.187 Sum_probs=66.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+.|.|+|||..|+.-+..|+ +.|.+|++-.+... ..++++++|+.+. ...+| +++||.|
T Consensus 4 ~k~IAViGyGsQG~a~AlNLr----------DSG~~V~Vglr~~s~s~~~A~~~Gf~v~--------~~~eA-v~~aDvV 64 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLR----------DSGVNVIVGLREGSASWEKAKADGFEVM--------SVAEA-VKKADVV 64 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHH----------HCC-EEEEEE-TTCHHHHHHHHTT-ECC--------EHHHH-HHC-SEE
T ss_pred CCEEEEECCChHHHHHHHHHH----------hCCCCEEEEecCCCcCHHHHHHCCCeec--------cHHHH-HhhCCEE
Confidence 467999999999999999998 89999999988776 6788888888774 23333 6789999
Q ss_pred EEEcCCHH-HHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHcCCCeEE
Q 006034 482 MIMYTDKK-RTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAI 529 (663)
Q Consensus 482 v~~~~dd~-~n~~~~~~~r~~~~~~~iia~~~--~~~~~~~l~~~Gad~vi 529 (663)
+.+++|.. .-+.--.....+.|. .++.-+. |-.+...--+.++|.++
T Consensus 65 ~~L~PD~~q~~vy~~~I~p~l~~G-~~L~fahGfni~~~~i~pp~~vdV~m 114 (165)
T PF07991_consen 65 MLLLPDEVQPEVYEEEIAPNLKPG-ATLVFAHGFNIHYGLIKPPKDVDVIM 114 (165)
T ss_dssp EE-S-HHHHHHHHHHHHHHHS-TT--EEEESSSHHHHCTTS---TTSEEEE
T ss_pred EEeCChHHHHHHHHHHHHhhCCCC-CEEEeCCcchhhcCcccCCCCCeEEE
Confidence 99998753 233334455556555 5555544 33344444556777654
No 88
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.13 E-value=0.037 Score=62.58 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=58.9
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---------------cCCCEEEecCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---------------LGFPILYGDAS 465 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---------------~~~~vi~GD~~ 465 (663)
..+.++|.|. |.+|+.+++.|. +.|++|+++++|+++.+.+.+ .+..++.||.+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LL----------k~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLt 148 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELL----------KLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLE 148 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCC
Confidence 4457888886 999999999997 789999999999988765432 13568999999
Q ss_pred CHHHHHhcCCCCCcEEEEEcC
Q 006034 466 RPAVLLSAGITSPKAVMIMYT 486 (663)
Q Consensus 466 ~~~~L~~a~i~~a~~vv~~~~ 486 (663)
|.+.+++ -++++|.||.+.+
T Consensus 149 D~esI~~-aLggiDiVVn~AG 168 (576)
T PLN03209 149 KPDQIGP-ALGNASVVICCIG 168 (576)
T ss_pred CHHHHHH-HhcCCCEEEEccc
Confidence 9998865 3567898887764
No 89
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.12 E-value=0.037 Score=56.39 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=68.2
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..+.+++|+|.|..++.+++... ..|++|+++|.+++......-.+...+..+. -++.+. .++.-++
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~----------~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~t~ 164 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALA----------PLPCRVTWVDSREAEFPEDLPDGVATLVTDE-PEAEVA--EAPPGSY 164 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHh----------cCCCEEEEEeCCcccccccCCCCceEEecCC-HHHHHh--cCCCCcE
Confidence 35678999999999999999997 8999999999888744222212222222221 133444 3556788
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHH---HHHHcCC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL---DLKKAGA 525 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~---~l~~~Ga 525 (663)
++++|.|.+....+...+-+..|-.+|=+.-...+... .|++.|.
T Consensus 165 vvi~th~h~~D~~~L~~aL~~~~~~YIG~lGSr~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 165 FLVLTHDHALDLELCHAALRRGDFAYFGLIGSKTKRARFEHRLRARGV 212 (246)
T ss_pred EEEEeCChHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC
Confidence 99999986655555555542223324444444333333 4445554
No 90
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=96.11 E-value=0.0093 Score=54.13 Aligned_cols=106 Identities=20% Similarity=0.190 Sum_probs=58.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEe-CChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFD-LNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid-~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+-++-|+|.|++|..+++.|. +.|++|..+. ++++..+++...--.. ...+ +.+ -+++||.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~----------~ag~~v~~v~srs~~sa~~a~~~~~~~---~~~~---~~~-~~~~aDl 71 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALA----------RAGHEVVGVYSRSPASAERAAAFIGAG---AILD---LEE-ILRDADL 71 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHH----------HTTSEEEEESSCHH-HHHHHHC--TT-----------TTG-GGCC-SE
T ss_pred CccEEEEECCCHHHHHHHHHHH----------HCCCeEEEEEeCCcccccccccccccc---cccc---ccc-ccccCCE
Confidence 4558999999999999999998 7899998885 4555666665421111 1111 111 2468999
Q ss_pred EEEEcCCHHHHHHHHHHHHH--hCCCCcEEEEecChh---hHHHHHHcCC
Q 006034 481 VMIMYTDKKRTIEAVQRLRL--AFPAIPIYARAQDMM---HLLDLKKAGA 525 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~--~~~~~~iia~~~~~~---~~~~l~~~Ga 525 (663)
++++++||...-.....+.. ..|+ ++++.+.=.. -.+-+++.|+
T Consensus 72 v~iavpDdaI~~va~~La~~~~~~~g-~iVvHtSGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 72 VFIAVPDDAIAEVAEQLAQYGAWRPG-QIVVHTSGALGSDVLAPARERGA 120 (127)
T ss_dssp EEE-S-CCHHHHHHHHHHCC--S-TT--EEEES-SS--GGGGHHHHHTT-
T ss_pred EEEEechHHHHHHHHHHHHhccCCCC-cEEEECCCCChHHhhhhHHHCCC
Confidence 99999998654443333333 2344 7888766332 3333444554
No 91
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.08 E-value=0.36 Score=51.42 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=67.6
Q ss_pred HHHHHHHHhC-----CcHHHHHHHhhhhccCC----chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhH-HHHHH
Q 006034 228 GTSLLTQKLG-----FSDTLGAFLAGAILAET----NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREW-PNVLA 297 (663)
Q Consensus 228 ~~~~l~~~~G-----~s~~lgAflaGl~l~~~----~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~-~~~l~ 297 (663)
...++.++++ ++...+++..|.+++|. ...+-..+.++.+.+.-..+|-...=|++.+.++.+.+ +..+.
T Consensus 233 vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~vi 312 (404)
T COG0786 233 VGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVI 312 (404)
T ss_pred HHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4445777666 67789999999999985 12222345555667888888888888888888887543 33333
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 006034 298 LLAGLIIIKTLIISAIGPRVGLTLQESVRIGL 329 (663)
Q Consensus 298 ~~~~~~l~K~~~~~~~~~~~g~~~r~~~~~g~ 329 (663)
+.+-.++.-....+...|..|.++..+...+.
T Consensus 313 L~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G 344 (404)
T COG0786 313 LAVQTIVMALFAIFVTFRLMGKNYDAAVLAAG 344 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhHHHHhcc
Confidence 33333344444556666778888888776554
No 92
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.08 E-value=0.032 Score=59.59 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh---------------------HHHH----HHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP---------------------SVVK----ESRKL 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~---------------------~~~~----~~~~~ 455 (663)
.+.+|+|+|.|.+|..+++.|. ..|. ++.+||.|. .+++ .+++.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La----------~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i 92 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLV----------RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI 92 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH
Confidence 3568999999999999999997 6777 899999984 1222 22221
Q ss_pred C----CCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 456 G----FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 456 ~----~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
+ ...+..+.++.+.. +. ++++|.||.++++.+.+..+...+++.+.. .+.+.
T Consensus 93 np~v~v~~~~~~~~~~~~~-~~-~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP-~i~~~ 148 (339)
T PRK07688 93 NSDVRVEAIVQDVTAEELE-EL-VTGVDLIIDATDNFETRFIVNDAAQKYGIP-WIYGA 148 (339)
T ss_pred CCCcEEEEEeccCCHHHHH-HH-HcCCCEEEEcCCCHHHHHHHHHHHHHhCCC-EEEEe
Confidence 1 33455666554433 33 678999999999999999999999988633 34433
No 93
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.07 E-value=0.018 Score=60.29 Aligned_cols=75 Identities=20% Similarity=0.314 Sum_probs=52.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcC-----CCEEEecCCCH-----------
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLG-----FPILYGDASRP----------- 467 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~-----~~vi~GD~~~~----------- 467 (663)
++|.|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.+.- ..+-.|+.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la----------~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 71 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFA----------VSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY 71 (288)
T ss_pred cEEEEECccHHHHHHHHHHH----------hCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 46999999999999999997 78999999999999988765310 00111222211
Q ss_pred -HHHHhcCCCCCcEEEEEcCCHH
Q 006034 468 -AVLLSAGITSPKAVMIMYTDKK 489 (663)
Q Consensus 468 -~~L~~a~i~~a~~vv~~~~dd~ 489 (663)
+.+ +..+++||.|+.+..++.
T Consensus 72 ~~~~-~~~~~~aD~Vi~avpe~~ 93 (288)
T PRK09260 72 SLDL-KAAVADADLVIEAVPEKL 93 (288)
T ss_pred eCcH-HHhhcCCCEEEEeccCCH
Confidence 112 234688999998888764
No 94
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.06 E-value=0.014 Score=61.54 Aligned_cols=133 Identities=19% Similarity=0.226 Sum_probs=82.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHhc--------CCCE-EEecCCCHHHHHhc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKL--------GFPI-LYGDASRPAVLLSA 473 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~~--------~~~v-i~GD~~~~~~L~~a 473 (663)
+|.|+|.|.+|+.++..|. ..| .+++++|.|+++++....+ +... +. ..+.+
T Consensus 2 kI~IIGaG~vG~~~a~~l~----------~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~~----- 64 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLV----------NQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDYS----- 64 (306)
T ss_pred EEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCHH-----
Confidence 6899999999999999997 556 5899999999987655431 1221 22 22332
Q ss_pred CCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HHHH-cCC--CeEEcC-c
Q 006034 474 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DLKK-AGA--TDAILE-N 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l~~-~Ga--d~vi~p-~ 532 (663)
.+.+||.+|.+++. | +.|.. ++..+++.+|+.. +..+.||.+.- .+.+ .|. .+|+-. .
T Consensus 65 ~l~~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~-vivvsNP~d~~~~~~~~~~g~p~~~v~g~gt 143 (306)
T cd05291 65 DCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGI-FLVASNPVDVITYVVQKLSGLPKNRVIGTGT 143 (306)
T ss_pred HhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEEecChHHHHHHHHHHHhCcCHHHEeeccc
Confidence 24799999998875 1 23544 4455677788854 44555655432 2222 333 345444 3
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
.+-..++-..+-+.+++++..++
T Consensus 144 ~LDs~R~~~~la~~l~v~~~~v~ 166 (306)
T cd05291 144 SLDTARLRRALAEKLNVDPRSVH 166 (306)
T ss_pred hHHHHHHHHHHHHHHCCCcccce
Confidence 33355666666666777775444
No 95
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=95.99 E-value=0.0078 Score=65.37 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=60.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE------EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV------AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv------vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i 475 (663)
..++|+|+|||++|+.-|..|+ ..|.+|+ +||.+.+..+.+.++|+.+ + + +.++ +
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLr----------dSGvnVvvglr~~~id~~~~s~~kA~~dGF~v--~--~----~~Ea-~ 95 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMR----------DSGLDISYALRKEAIAEKRASWRKATENGFKV--G--T----YEEL-I 95 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCc----------cccceeEEeccccccccccchHHHHHhcCCcc--C--C----HHHH-H
Confidence 4478999999999998888886 7899999 8898888888888888854 2 2 3333 7
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHh
Q 006034 476 TSPKAVMIMYTDKKRTIEAVQRLRLA 501 (663)
Q Consensus 476 ~~a~~vv~~~~dd~~n~~~~~~~r~~ 501 (663)
.+||.|+++++|......-......+
T Consensus 96 ~~ADvVviLlPDt~q~~v~~~i~p~L 121 (487)
T PRK05225 96 PQADLVINLTPDKQHSDVVRAVQPLM 121 (487)
T ss_pred HhCCEEEEcCChHHHHHHHHHHHhhC
Confidence 89999999999975444433333333
No 96
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.047 Score=54.03 Aligned_cols=109 Identities=20% Similarity=0.179 Sum_probs=75.1
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEc
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 485 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~ 485 (663)
+=.+|.|++|..++++|. +.|++|++.|.|++.++.+.+++ ..|-.+=.+.+.+.+-.++-.+++..
T Consensus 3 iGmiGLGrMG~n~v~rl~----------~~ghdvV~yD~n~~av~~~~~~g---a~~a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 3 IGMIGLGRMGANLVRRLL----------DGGHDVVGYDVNQTAVEELKDEG---ATGAASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred ceeeccchhhHHHHHHHH----------hCCCeEEEEcCCHHHHHHHHhcC---CccccCHHHHHHhcCCCcEEEEEccC
Confidence 457899999999999998 89999999999999999999877 33333446677777766666665555
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChh------hHHHHHHcCCCeEE
Q 006034 486 TDKKRTIEAVQRLRLAFPAIPIYARAQDMM------HLLDLKKAGATDAI 529 (663)
Q Consensus 486 ~dd~~n~~~~~~~r~~~~~~~iia~~~~~~------~~~~l~~~Gad~vi 529 (663)
+| .++..+-..+-.+.+. .++.---|.. ..+.+++.|++.+=
T Consensus 70 g~-it~~vi~~la~~L~~G-DivIDGGNS~y~Ds~rr~~~l~~kgi~flD 117 (300)
T COG1023 70 GD-ITDAVIDDLAPLLSAG-DIVIDGGNSNYKDSLRRAKLLAEKGIHFLD 117 (300)
T ss_pred CC-chHHHHHHHHhhcCCC-CEEEECCccchHHHHHHHHHHHhcCCeEEe
Confidence 54 3444445555666655 4555444333 33346667776553
No 97
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.96 E-value=0.025 Score=59.98 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=61.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE--------e--cCCCHHHHHhcC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--------G--DASRPAVLLSAG 474 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~--------G--D~~~~~~L~~a~ 474 (663)
+|.|+|.|.+|..++..|. +.|++|.++|++++.++.+.+.+....+ + -.++.+ + -
T Consensus 3 kI~iiG~G~mG~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~ 68 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLA----------RNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLA---E-A 68 (325)
T ss_pred EEEEECCCHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHH---H-H
Confidence 5899999999999999997 7899999999999999888775422111 0 012222 1 2
Q ss_pred CCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 475 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 475 i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
++++|.+++++.++...-......+...++..++...|
T Consensus 69 ~~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~n 106 (325)
T PRK00094 69 LADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATK 106 (325)
T ss_pred HhCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEee
Confidence 45789999999986432222223333455534454443
No 98
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.92 E-value=0.078 Score=55.94 Aligned_cols=113 Identities=12% Similarity=0.155 Sum_probs=74.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHH-----hcCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLL-----SAGITS 477 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~-----~a~i~~ 477 (663)
-+|.|+|.|.+|..++-.|. +.|.+|+++++.+++.+.++++ |..+ ..+... .... ....+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~----------~~G~~V~lv~r~~~~~~~i~~~~Gl~i-~~~g~~-~~~~~~~~~~~~~~~ 70 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLA----------RAGLPVRLILRDRQRLAAYQQAGGLTL-VEQGQA-SLYAIPAETADAAEP 70 (305)
T ss_pred ceEEEECCCHHHHHHHHHHH----------hCCCCeEEEEechHHHHHHhhcCCeEE-eeCCcc-eeeccCCCCcccccc
Confidence 46999999999999999997 7899999999998888888754 5433 222211 1100 111347
Q ss_pred CcEEEEEcCCHHHHHHHHHHH-HHhCCCCcEEEEecChhhHHHHHH-cCCCeEE
Q 006034 478 PKAVMIMYTDKKRTIEAVQRL-RLAFPAIPIYARAQDMMHLLDLKK-AGATDAI 529 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~-r~~~~~~~iia~~~~~~~~~~l~~-~Gad~vi 529 (663)
.|.+++++-..... .+...+ ...+++..++...|=-.+.+.+.+ .+-+.++
T Consensus 71 ~D~viv~vK~~~~~-~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~ 123 (305)
T PRK05708 71 IHRLLLACKAYDAE-PAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCI 123 (305)
T ss_pred cCEEEEECCHHhHH-HHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEE
Confidence 89998888775432 333333 445778778888887666665544 4555444
No 99
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.91 E-value=0.038 Score=61.65 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC--ChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL--NPSVVKESRK-LGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~--d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
..++++|+|+|+++..=++.|. +.|.+|+||-. +++. +.+.+ .....+..+..+. .++++
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll----------~~ga~v~visp~~~~~~-~~l~~~~~i~~~~~~~~~~------dl~~~ 73 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLL----------DAGARLTVNALAFIPQF-TAWADAGMLTLVEGPFDES------LLDTC 73 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEcCCCCHHH-HHHHhCCCEEEEeCCCChH------HhCCC
Confidence 3468999999999999888886 78889999944 4443 33433 3456666655433 34688
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
+.|+++|+|.+.|-.+...+|+.+
T Consensus 74 ~lv~~at~d~~~n~~i~~~a~~~~ 97 (457)
T PRK10637 74 WLAIAATDDDAVNQRVSEAAEARR 97 (457)
T ss_pred EEEEECCCCHHHhHHHHHHHHHcC
Confidence 999999999999999999999875
No 100
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.88 E-value=0.086 Score=55.14 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=70.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-|+|.|++|..+++.|. +.|++|.+.|+++++.+.+.+.+... .++.+ + -++++|.++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~----------~~G~~V~~~dr~~~~~~~~~~~g~~~----~~~~~---~-~~~~aDivi~~ 62 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLA----------KAGYQLHVTTIGPEVADELLAAGAVT----AETAR---Q-VTEQADVIFTM 62 (291)
T ss_pred CEEEEEecHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCcc----cCCHH---H-HHhcCCEEEEe
Confidence 3789999999999999998 78999999999999999888765432 12221 1 13578999999
Q ss_pred cCCHHHHHHHH---H-HHHHhCCCCcEEEEecC--h----hhHHHHHHcCCCeEEcC
Q 006034 485 YTDKKRTIEAV---Q-RLRLAFPAIPIYARAQD--M----MHLLDLKKAGATDAILE 531 (663)
Q Consensus 485 ~~dd~~n~~~~---~-~~r~~~~~~~iia~~~~--~----~~~~~l~~~Gad~vi~p 531 (663)
.+++..--... . ......|+ .+++-..+ + +-.+.+++.|+..+-.|
T Consensus 63 vp~~~~~~~v~~~~~~~~~~~~~g-~iivd~st~~~~~~~~l~~~l~~~g~~~~~~p 118 (291)
T TIGR01505 63 VPDSPQVEEVAFGENGIIEGAKPG-KTLVDMSSISPIESKRFAKAVKEKGIDYLDAP 118 (291)
T ss_pred cCCHHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence 98764322221 1 22333444 55554432 2 23344566788766655
No 101
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.85 E-value=0.03 Score=59.27 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=64.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
...+++|+|.|++|+.+++.|.+ ....++.++++++++.+.+.+ .+..++ +.+-+.++ +.++|.
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~---------~g~~~V~v~~r~~~ra~~la~~~g~~~~-----~~~~~~~~-l~~aDv 241 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAA---------KGVAEITIANRTYERAEELAKELGGNAV-----PLDELLEL-LNEADV 241 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHH---------cCCCEEEEEeCCHHHHHHHHHHcCCeEE-----eHHHHHHH-HhcCCE
Confidence 34679999999999999999971 244789999999998866655 444332 22233332 577999
Q ss_pred EEEEcCCHHH-HHHHHHHHHHhCCCCcEEEEecChhh
Q 006034 481 VMIMYTDKKR-TIEAVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 481 vv~~~~dd~~-n~~~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
++.+|+.++. +.......+... +-.++.-...|.+
T Consensus 242 Vi~at~~~~~~~~~~~~~~~~~~-~~~~viDlavPrd 277 (311)
T cd05213 242 VISATGAPHYAKIVERAMKKRSG-KPRLIVDLAVPRD 277 (311)
T ss_pred EEECCCCCchHHHHHHHHhhCCC-CCeEEEEeCCCCC
Confidence 9999998765 333222222211 2256666666544
No 102
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.84 E-value=0.096 Score=54.89 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=71.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-|+|.|.+|..+++.|. +.|++|.+.|+++++.+.+.+.+..+ .++.+-+ ++++|.++++
T Consensus 4 ~IgviG~G~mG~~~a~~l~----------~~g~~v~~~d~~~~~~~~~~~~g~~~----~~~~~e~----~~~~d~vi~~ 65 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLL----------KAGYSLVVYDRNPEAVAEVIAAGAET----ASTAKAV----AEQCDVIITM 65 (296)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHCCCee----cCCHHHH----HhcCCEEEEe
Confidence 6899999999999999997 78899999999999988887765432 1222222 3578999999
Q ss_pred cCCHHHHHHHH----HHHHHhCCCCcEEEEec--Chhh----HHHHHHcCCCeEEcC
Q 006034 485 YTDKKRTIEAV----QRLRLAFPAIPIYARAQ--DMMH----LLDLKKAGATDAILE 531 (663)
Q Consensus 485 ~~dd~~n~~~~----~~~r~~~~~~~iia~~~--~~~~----~~~l~~~Gad~vi~p 531 (663)
++++...-... ...+.+.++ ++++-.. ++.. .+.+++.|++.+-.|
T Consensus 66 vp~~~~~~~v~~~~~~~~~~~~~g-~iiid~st~~~~~~~~l~~~~~~~g~~~~d~p 121 (296)
T PRK11559 66 LPNSPHVKEVALGENGIIEGAKPG-TVVIDMSSIAPLASREIAAALKAKGIEMLDAP 121 (296)
T ss_pred CCCHHHHHHHHcCcchHhhcCCCC-cEEEECCCCCHHHHHHHHHHHHHcCCcEEEcC
Confidence 98765322221 123334444 5565443 2322 234455688765555
No 103
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.81 E-value=0.093 Score=55.11 Aligned_cols=137 Identities=19% Similarity=0.224 Sum_probs=82.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|..+++.|. +.|++|.+.|+++++.+.+.+.+... ..+++ ++ ++++|.++++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~----------~~G~~V~v~d~~~~~~~~~~~~g~~~----~~s~~---~~-~~~aDvVi~~ 64 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLL----------KQGHQLQVFDVNPQAVDALVDKGATP----AASPA---QA-AAGAEFVITM 64 (296)
T ss_pred eEEEEeeCHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHcCCcc----cCCHH---HH-HhcCCEEEEe
Confidence 5889999999999999997 78999999999999999888765432 12222 11 3578999999
Q ss_pred cCCHHHHHHHHH----HHHHhCCCCcEEEEec--Chh----hHHHHHHcCCCeEEcCchHHHHHHHHH--HHHhcCCCHH
Q 006034 485 YTDKKRTIEAVQ----RLRLAFPAIPIYARAQ--DMM----HLLDLKKAGATDAILENAETSLQLGSK--LLKGFGVMSD 552 (663)
Q Consensus 485 ~~dd~~n~~~~~----~~r~~~~~~~iia~~~--~~~----~~~~l~~~Gad~vi~p~~~~~~~la~~--~~~~~~~~~~ 552 (663)
.++++.--.+.. ..+.+.++ +++.... ++. -.+.+.+.|++.+=.|-. .+..-++. +.-..|-++.
T Consensus 65 vp~~~~~~~vl~~~~~i~~~l~~g-~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~-g~~~~a~~g~l~~~~gg~~~ 142 (296)
T PRK15461 65 LPNGDLVRSVLFGENGVCEGLSRD-ALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVG-RTSDNAITGTLLLLAGGTAE 142 (296)
T ss_pred cCCHHHHHHHHcCcccHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCC-CCHHHHHhCcEEEEECCCHH
Confidence 998753222221 12223333 4555444 333 335567778886655532 12222221 1112344566
Q ss_pred HHHHHHHHH
Q 006034 553 DVTFLRQLV 561 (663)
Q Consensus 553 ~~~~~~~~~ 561 (663)
..+....++
T Consensus 143 ~~~~~~p~l 151 (296)
T PRK15461 143 QVERATPIL 151 (296)
T ss_pred HHHHHHHHH
Confidence 665554444
No 104
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.46 Score=52.06 Aligned_cols=113 Identities=23% Similarity=0.243 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHhhhhccCC--chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHH-HHH
Q 006034 221 LCLLTVAGTSLLTQKLGFSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPN-VLA 297 (663)
Q Consensus 221 ~~l~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~--~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~-~l~ 297 (663)
..+..+....++.+.+|+++++|=.++|+++.+. ..-.+-.+.++.+.++=..++...+|++.|++.+.+.... ...
T Consensus 13 iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~ 92 (397)
T COG0475 13 ILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLG 92 (397)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhh
Confidence 3444555666899999999999999999999983 1222233445555666666777889999999999876443 222
Q ss_pred HHHHHHHHHHHHH--HHHHhhcCCChHHHHHHHHhhhhh
Q 006034 298 LLAGLIIIKTLII--SAIGPRVGLTLQESVRIGLLLSQG 334 (663)
Q Consensus 298 ~~~~~~l~K~~~~--~~~~~~~g~~~r~~~~~g~~l~~~ 334 (663)
.....+..-++.. +... ..++++++++..|..++.-
T Consensus 93 ~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~s 130 (397)
T COG0475 93 VAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALS 130 (397)
T ss_pred HHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHH
Confidence 2222222221222 2222 5899999999999866553
No 105
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.78 E-value=0.02 Score=63.87 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=65.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHH----HHHHhcCCCEEEecCCCHHHHHhcCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVV----KESRKLGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~----~~~~~~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
.++++|+|.|+.|..+|+.|. +.|++|+++|.++ +.. +.+.+.+..++.+|..+. ..++
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~----------~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~ 68 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLK----------KLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE------FLEG 68 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh------Hhhc
Confidence 467999999999999999998 8999999999985 333 444556788889998872 2457
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
+|.||.+++....|- ....+|+.+ ++++.
T Consensus 69 ~d~vv~~~g~~~~~~-~~~~a~~~~--i~~~~ 97 (450)
T PRK14106 69 VDLVVVSPGVPLDSP-PVVQAHKKG--IEVIG 97 (450)
T ss_pred CCEEEECCCCCCCCH-HHHHHHHCC--CcEEe
Confidence 898988887655544 555666654 34443
No 106
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.77 E-value=0.03 Score=54.85 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=61.1
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhcCCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
.++++|+|. |.+|+.+++.|. +.+.+|+++++++++.+.+.+ .+..+...|..|.+-+.+ -+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~----------~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~ 96 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLA----------REGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAA-AIK 96 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHH-HHh
Confidence 357999997 999999999997 678899999999998777654 246677788888776654 346
Q ss_pred CCcEEEEEcCCHHH
Q 006034 477 SPKAVMIMYTDKKR 490 (663)
Q Consensus 477 ~a~~vv~~~~dd~~ 490 (663)
++|.++.+++....
T Consensus 97 ~~diVi~at~~g~~ 110 (194)
T cd01078 97 GADVVFAAGAAGVE 110 (194)
T ss_pred cCCEEEECCCCCce
Confidence 88988888887654
No 107
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.75 E-value=0.072 Score=55.82 Aligned_cols=137 Identities=14% Similarity=0.137 Sum_probs=82.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|-++|.|++|..+++.|. +.|+++.+.|++++ .+.+.+.|.... .++.-+ .+++|.++++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~----------~~G~~v~v~~~~~~-~~~~~~~g~~~~----~s~~~~----~~~advVi~~ 62 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLA----------RAGHQLHVTTIGPV-ADELLSLGAVSV----ETARQV----TEASDIIFIM 62 (292)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCeEEEEeCCHh-HHHHHHcCCeec----CCHHHH----HhcCCEEEEe
Confidence 4789999999999999997 78999999999985 466655554322 222221 3588999999
Q ss_pred cCCHHHHHHHHH----HHHHhCCCCcEEEEecC--hh----hHHHHHHcCCCeEEcCchHHHHHHHHH-HHH-hcCCCHH
Q 006034 485 YTDKKRTIEAVQ----RLRLAFPAIPIYARAQD--MM----HLLDLKKAGATDAILENAETSLQLGSK-LLK-GFGVMSD 552 (663)
Q Consensus 485 ~~dd~~n~~~~~----~~r~~~~~~~iia~~~~--~~----~~~~l~~~Gad~vi~p~~~~~~~la~~-~~~-~~~~~~~ 552 (663)
..|++.-..+.. .+....|+ +++.-..+ ++ -.+.+++.|++.+-.|- ..+..-++. -+. ..+=++.
T Consensus 63 v~~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPV-sGg~~~a~~g~l~~~~gG~~~ 140 (292)
T PRK15059 63 VPDTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAPV-SGGEIGAREGTLSIMVGGDEA 140 (292)
T ss_pred CCChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEecC-CCCHHHHhcCcEEEEEcCCHH
Confidence 998754332221 12233444 56665553 32 33566788998777773 223332221 111 2244555
Q ss_pred HHHHHHHHHh
Q 006034 553 DVTFLRQLVR 562 (663)
Q Consensus 553 ~~~~~~~~~~ 562 (663)
.++.+..+++
T Consensus 141 ~~~~~~p~l~ 150 (292)
T PRK15059 141 VFERVKPLFE 150 (292)
T ss_pred HHHHHHHHHH
Confidence 5565555444
No 108
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.73 E-value=0.047 Score=54.10 Aligned_cols=84 Identities=15% Similarity=0.044 Sum_probs=66.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.++|+|+|..|..=++.|. +.|.+++++-.+. +....+.+ .....+. +.-+++-+. +++.
T Consensus 12 ~k~VlvvGgG~va~rKa~~ll----------~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-----~~~l 75 (210)
T COG1648 12 GKKVLVVGGGSVALRKARLLL----------KAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-----DAFL 75 (210)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-----CceE
Confidence 457999999999999999997 8899999997766 44555544 3344555 555555553 4999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
++++|+|.+.|-.+...|++.+
T Consensus 76 viaAt~d~~ln~~i~~~a~~~~ 97 (210)
T COG1648 76 VIAATDDEELNERIAKAARERR 97 (210)
T ss_pred EEEeCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986
No 109
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.69 E-value=0.063 Score=56.59 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=85.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecC----CCHHHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDA----SRPAVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~----~~~~~L~~a~i~~a~~ 480 (663)
+|.|+|.|-+|..++-.|. +.|.+|+++-+++. ++.+++.|..+...+. .....-.......+|.
T Consensus 2 kI~IlGaGAvG~l~g~~L~----------~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dl 70 (307)
T COG1893 2 KILILGAGAIGSLLGARLA----------KAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADL 70 (307)
T ss_pred eEEEECCcHHHHHHHHHHH----------hCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCE
Confidence 5899999999999999997 67777777776666 8888888877776665 1112222334558999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCe
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATD 527 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~ 527 (663)
+++++..-..+-.+....+...|+..|+...|--.+.+.+++.....
T Consensus 71 viv~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~ 117 (307)
T COG1893 71 VIVTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE 117 (307)
T ss_pred EEEEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc
Confidence 99999887666666677777788877888999888888888877766
No 110
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.68 E-value=0.058 Score=57.72 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=65.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecC------------CCHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDA------------SRPAVLL 471 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~------------~~~~~L~ 471 (663)
.+|.|+|.|.+|..++..|. +.|++|.++|+++. .+.+++.+..+...+. ++. .+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~----------~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~ 69 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLA----------AAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTD--PA 69 (341)
T ss_pred ceEEEECCCHHHHHHHHHHH----------hcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccC--hh
Confidence 36999999999999999997 78999999998764 4666665554422111 111 12
Q ss_pred hcCCCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH
Q 006034 472 SAGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK 522 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~ 522 (663)
.++++|.+++++.++.. ..++..++. ..++..++...|.....+.+++
T Consensus 70 --~~~~~D~vil~vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~ 118 (341)
T PRK08229 70 --ALATADLVLVTVKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLRA 118 (341)
T ss_pred --hccCCCEEEEEecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH
Confidence 25689999999887543 333444444 3455335555555554454544
No 111
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.65 E-value=0.025 Score=58.52 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=58.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc--CC----
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GI---- 475 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a--~i---- 475 (663)
.+.++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+.+..++.+|.+|++.++++ .+
T Consensus 4 ~k~vlItGasggiG~~la~~l~----------~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 73 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQ----------SDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELS 73 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 357899998 999999999997 7899999999999998888887888999999998866442 11
Q ss_pred -CCCcEEEEE
Q 006034 476 -TSPKAVMIM 484 (663)
Q Consensus 476 -~~a~~vv~~ 484 (663)
.+.|.+|..
T Consensus 74 ~g~id~li~~ 83 (277)
T PRK05993 74 GGRLDALFNN 83 (277)
T ss_pred CCCccEEEEC
Confidence 356776654
No 112
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.61 E-value=0.36 Score=51.33 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=69.3
Q ss_pred hCCcHHHHHHHhhhhccCCc---hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 006034 236 LGFSDTLGAFLAGAILAETN---FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISA 312 (663)
Q Consensus 236 ~G~s~~lgAflaGl~l~~~~---~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~ 312 (663)
.++++.+=|.+.|++++|.- ..+....-++-....++-+=-+..|+++++.++.+.....+.+....+..-+...++
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 47888888999999999952 122222212211345666667899999999999765333344444444555555455
Q ss_pred HH-hhcCCChHHHHHHHHhhhhhhhHHHHH
Q 006034 313 IG-PRVGLTLQESVRIGLLLSQGGEFAFVV 341 (663)
Q Consensus 313 ~~-~~~g~~~r~~~~~g~~l~~~G~~~lvl 341 (663)
.+ +++|++++.+..++.+.+-=|.-+++.
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~A 138 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVAA 138 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHHH
Confidence 55 789999999999988766655444443
No 113
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.56 E-value=0.14 Score=53.04 Aligned_cols=108 Identities=17% Similarity=0.190 Sum_probs=76.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|-.+|.|.+|..+|+.|. +.|+++.+.|+++++ ++.+.+.|..+.. ++ ..-+.++|.||.
T Consensus 2 kIafIGLG~MG~pmA~~L~----------~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~----s~----~eaa~~aDvVit 63 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLL----------KAGHEVTVYNRTPEKAAELLAAAGATVAA----SP----AEAAAEADVVIT 63 (286)
T ss_pred eEEEEcCchhhHHHHHHHH----------HCCCEEEEEeCChhhhhHHHHHcCCcccC----CH----HHHHHhCCEEEE
Confidence 5889999999999999998 899999999999999 7777766655432 22 123578999999
Q ss_pred EcCCHHHHHHHHH----HHHHhCCCCcEEEEec--Ch----hhHHHHHHcCCCeEEcC
Q 006034 484 MYTDKKRTIEAVQ----RLRLAFPAIPIYARAQ--DM----MHLLDLKKAGATDAILE 531 (663)
Q Consensus 484 ~~~dd~~n~~~~~----~~r~~~~~~~iia~~~--~~----~~~~~l~~~Gad~vi~p 531 (663)
+..|+..-..+.. .++.+.|. .++.-.+ ++ +..+.+++.|.+.+=-|
T Consensus 64 mv~~~~~V~~V~~g~~g~~~~~~~G-~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAP 120 (286)
T COG2084 64 MLPDDAAVRAVLFGENGLLEGLKPG-AIVIDMSTISPETARELAAALAAKGLEFLDAP 120 (286)
T ss_pred ecCCHHHHHHHHhCccchhhcCCCC-CEEEECCCCCHHHHHHHHHHHHhcCCcEEecC
Confidence 9998765333322 34444444 4444333 33 45556788898887777
No 114
>PRK08017 oxidoreductase; Provisional
Probab=95.55 E-value=0.029 Score=57.02 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=51.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHh
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~ 472 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+.+...+.+|.+|++-+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELK----------RRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHH
Confidence 46999998 999999999997 779999999999998888777778889999999876544
No 115
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.54 E-value=0.1 Score=54.58 Aligned_cols=105 Identities=24% Similarity=0.286 Sum_probs=69.2
Q ss_pred EEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCC
Q 006034 408 IVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 408 I~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~d 487 (663)
++|.|++|..+++.|. +.|++|.+.|+++++++.+.+.+... ..+++ + -++++|.++++..+
T Consensus 1 ~IGlG~mG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~g~~~----~~s~~---~-~~~~advVil~vp~ 62 (288)
T TIGR01692 1 FIGLGNMGGPMAANLL----------KAGHPVRVFDLFPDAVEEAVAAGAQA----AASPA---E-AAEGADRVITMLPA 62 (288)
T ss_pred CCcccHhHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHcCCee----cCCHH---H-HHhcCCEEEEeCCC
Confidence 4799999999999997 78999999999999999988866432 11222 1 24578999999998
Q ss_pred HHHHHHHH---HH-HHHhCCCCcEEEEec--Chhh----HHHHHHcCCCeEEcC
Q 006034 488 KKRTIEAV---QR-LRLAFPAIPIYARAQ--DMMH----LLDLKKAGATDAILE 531 (663)
Q Consensus 488 d~~n~~~~---~~-~r~~~~~~~iia~~~--~~~~----~~~l~~~Gad~vi~p 531 (663)
++.--.+. .. .....++ +++.-.. +++. .+.+++.|++.+=.|
T Consensus 63 ~~~~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP 115 (288)
T TIGR01692 63 GQHVISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAP 115 (288)
T ss_pred hHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECC
Confidence 65322222 12 2233444 4444433 3332 345566798876655
No 116
>PLN02256 arogenate dehydrogenase
Probab=95.52 E-value=0.14 Score=53.94 Aligned_cols=93 Identities=18% Similarity=0.256 Sum_probs=59.4
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
....++.|+|+|.+|..+++.|. +.|++|.++|.+++. +...+.+... .++.+-+. ..++|.
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~----------~~G~~V~~~d~~~~~-~~a~~~gv~~----~~~~~e~~---~~~aDv 95 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFV----------KQGHTVLATSRSDYS-DIAAELGVSF----FRDPDDFC---EEHPDV 95 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHH----------hCCCEEEEEECccHH-HHHHHcCCee----eCCHHHHh---hCCCCE
Confidence 34568999999999999999997 678899999998743 4444455432 23333221 146899
Q ss_pred EEEEcCCHHHHHHHHHHH--HHhCCCCcEEEEecC
Q 006034 481 VMIMYTDKKRTIEAVQRL--RLAFPAIPIYARAQD 513 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~--r~~~~~~~iia~~~~ 513 (663)
|++++..+.. ..+.... ..+.++ .++.-+.+
T Consensus 96 Vilavp~~~~-~~vl~~l~~~~l~~~-~iviDv~S 128 (304)
T PLN02256 96 VLLCTSILST-EAVLRSLPLQRLKRS-TLFVDVLS 128 (304)
T ss_pred EEEecCHHHH-HHHHHhhhhhccCCC-CEEEecCC
Confidence 9999987532 3322222 224455 45555554
No 117
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=95.46 E-value=0.02 Score=52.73 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=55.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
..++++|+|.|..|+.++..|. +.|.+ +.++.+++++++.+.+. +..+-.-+..|.. ..+.++
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~----------~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~----~~~~~~ 76 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALA----------ALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLE----EALQEA 76 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHH----------HTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC----HHHHTE
T ss_pred CCCEEEEECCHHHHHHHHHHHH----------HcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHH----HHHhhC
Confidence 4678999999999999999998 66776 99999999999988763 3334343444333 124578
Q ss_pred cEEEEEcCCHHH
Q 006034 479 KAVMIMYTDKKR 490 (663)
Q Consensus 479 ~~vv~~~~dd~~ 490 (663)
|.+|.+|+....
T Consensus 77 DivI~aT~~~~~ 88 (135)
T PF01488_consen 77 DIVINATPSGMP 88 (135)
T ss_dssp SEEEE-SSTTST
T ss_pred CeEEEecCCCCc
Confidence 999999887543
No 118
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.44 E-value=0.39 Score=55.24 Aligned_cols=114 Identities=16% Similarity=0.093 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhCCcHHHHHHHhhhhccCCchh---hHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHH
Q 006034 224 LTVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR---TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLA 300 (663)
Q Consensus 224 ~~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~---~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~ 300 (663)
.+...+..+++.+|++..++-.++|++++....+ ..-.+..+.+..+..++..+..|+++|++.+.+.+...+.+..
T Consensus 16 ~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~ 95 (562)
T PRK05326 16 LLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLAT 95 (562)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHH
Confidence 3444556788899999999999999999875221 0112334556788899999999999999999877665554443
Q ss_pred HHHHHHHHH-HHHHHhhcCCChHHHHHHHHhhhhhhhH
Q 006034 301 GLIIIKTLI-ISAIGPRVGLTLQESVRIGLLLSQGGEF 337 (663)
Q Consensus 301 ~~~l~K~~~-~~~~~~~~g~~~r~~~~~g~~l~~~G~~ 337 (663)
..++.-.+. .+...+..++++.+++.+|..+++-...
T Consensus 96 ~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 96 LGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 334333333 3445556799999999999877665433
No 119
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.39 E-value=0.89 Score=44.21 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhcCChHHHHHhhhHHHH
Q 006034 39 WGILFLLFEMGLELSLARLKALAKFAFG 66 (663)
Q Consensus 39 lgl~lllF~~Glel~~~~l~~~~~~~~~ 66 (663)
+.+.+++|..|++++++++++..|+...
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~ 29 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL 29 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHH
Confidence 4678899999999999999988776543
No 120
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=95.38 E-value=0.13 Score=48.46 Aligned_cols=133 Identities=9% Similarity=-0.012 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHh--CCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc-
Q 006034 488 KKRTIEAVQRLRLA--FPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMSDDVTFLRQLVRNS- 564 (663)
Q Consensus 488 d~~n~~~~~~~r~~--~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~~~- 564 (663)
|.++...++.+... .-..++|+.+.|.++.++++..|-+.|=.-+..+|+.+..=..+ |..+.-.++++..+
T Consensus 17 Da~a~lsVLaL~~v~e~~~g~vIVE~S~~~t~~LlKsv~G~~VetV~dv~skL~VQCsRQ-----~GL~~Iy~~iL~~~k 91 (206)
T PF06241_consen 17 DADAFLSVLALQPVKEGLSGHVIVEVSDSDTEQLLKSVSGLKVETVHDVISKLMVQCSRQ-----PGLAQIYEDILGFEK 91 (206)
T ss_pred hHHHHHHHhhcccccccCcccEEEEecCCChHHHHHhhcCceeeeHHHHHHHHHHHhccC-----ccHHHHHHHHhCCCC
Confidence 44555555554332 23458999999999999999999998755554455544444444 66666666666544
Q ss_pred cccchhhhcccCCcchhcccccccchhhhhhhccCC--CCCCCcccccCCCCCCCCcCCCCCCceEEEeecCCC
Q 006034 565 MEIQAQEVLSQKDDQEFDIMKPLQVRVADIVEAEKT--IPSTSNDDKLSREDNTDTAGEDAKGVLYCELNGTNN 636 (663)
Q Consensus 565 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 636 (663)
.++-+...+. .. +.+..++++.=.+ .-.-..++++...|++|..++.||++|+.+.-..+.
T Consensus 92 ~vf~l~~~P~------L~-----Gm~y~dvr~~Fpdav~CGv~r~GkI~fhP~Dd~vL~e~DklLvIa~~~~~~ 154 (206)
T PF06241_consen 92 NVFNLKRWPQ------LD-----GMKYRDVRRSFPDAVVCGVKRDGKIVFHPDDDYVLREGDKLLVIAPVNGKR 154 (206)
T ss_pred cEEEEecCcc------cC-----CcCHHHHHhcCCcceeeeeeeCCeeEECCCCCceeecCCEEEEEeecCCcc
Confidence 2333333221 11 2233343332111 111113678889999999999999999998876554
No 121
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=95.38 E-value=0.16 Score=56.70 Aligned_cols=113 Identities=16% Similarity=0.215 Sum_probs=73.2
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc----CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~----~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
+|-|+|.|.+|..+|+.|. +.|++|.+.|+++++++.+.+. +..+ .+ ..+.+-+- ..++++|.
T Consensus 3 ~IgvIGLG~MG~~lA~nL~----------~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i-~~-~~s~~e~v-~~l~~~d~ 69 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIA----------SRGFKISVYNRTYEKTEEFVKKAKEGNTRV-KG-YHTLEELV-NSLKKPRK 69 (470)
T ss_pred EEEEEeEhHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHhhhhcCCcc-ee-cCCHHHHH-hcCCCCCE
Confidence 5889999999999999998 7999999999999999888753 4322 22 22332221 13457887
Q ss_pred EEEEcCCHHHHHHHHHHH-HHhCCCCcEEEEecCh------hhHHHHHHcCCCeEEcC
Q 006034 481 VMIMYTDKKRTIEAVQRL-RLAFPAIPIYARAQDM------MHLLDLKKAGATDAILE 531 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~-r~~~~~~~iia~~~~~------~~~~~l~~~Gad~vi~p 531 (663)
++++..+++..-.+...+ ..+.++ .++.-..+. +..+.+++.|++.+=.|
T Consensus 70 Iil~v~~~~~v~~vi~~l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~~Gi~fldap 126 (470)
T PTZ00142 70 VILLIKAGEAVDETIDNLLPLLEKG-DIIIDGGNEWYLNTERRIKRCEEKGILYLGMG 126 (470)
T ss_pred EEEEeCChHHHHHHHHHHHhhCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEcCC
Confidence 777766654333333333 334555 566654432 34556677788765544
No 122
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.38 E-value=0.079 Score=55.90 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=52.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..+|.|+|.|.+|..+++.|. +.| .+|.++|+++++.+.+.+.+.....- .+.++. ++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~----------~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~-~~~~~~-----~~~aDv 69 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIR----------RLGLAGEIVGADRSAETRARARELGLGDRVT-TSAAEA-----VKGADL 69 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHH----------hcCCCcEEEEEECCHHHHHHHHhCCCCceec-CCHHHH-----hcCCCE
Confidence 357999999999999999997 556 48999999999988887765421111 111222 467999
Q ss_pred EEEEcCCHH
Q 006034 481 VMIMYTDKK 489 (663)
Q Consensus 481 vv~~~~dd~ 489 (663)
++++++.+.
T Consensus 70 Viiavp~~~ 78 (307)
T PRK07502 70 VILCVPVGA 78 (307)
T ss_pred EEECCCHHH
Confidence 999998754
No 123
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=95.38 E-value=0.05 Score=55.47 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=68.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+.++|||||.+|+..|+.|+ ..|.+|.|-|.||=.+-.+.-+|++|.. |+++ ++++|.+|
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLk----------g~g~~VivTEiDPI~ALQAaMeG~~V~t--------m~ea-~~e~difV 274 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALK----------GFGARVIVTEIDPICALQAAMEGYEVTT--------LEEA-IREVDIFV 274 (434)
T ss_pred ccEEEEeccCccchhHHHHHh----------hcCcEEEEeccCchHHHHHHhhccEeee--------HHHh-hhcCCEEE
Confidence 457899999999999999998 8999999999999988888878888874 4443 56788787
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
.+|++ .|+......+++..+ .|++..-
T Consensus 275 TtTGc--~dii~~~H~~~mk~d-~IvCN~G 301 (434)
T KOG1370|consen 275 TTTGC--KDIITGEHFDQMKND-AIVCNIG 301 (434)
T ss_pred EccCC--cchhhHHHHHhCcCC-cEEeccc
Confidence 77776 466667777777433 5666443
No 124
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.35 E-value=0.063 Score=57.15 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=65.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCE--EEecCCC-----HHHHHhcCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI--LYGDASR-----PAVLLSAGITS 477 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~v--i~GD~~~-----~~~L~~a~i~~ 477 (663)
+|.|+|.|.+|..++..|. +.|++|.++++|++.++.+.+.+... +.|.... ...+.++--++
T Consensus 2 kI~IiGaGa~G~ala~~L~----------~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 71 (326)
T PRK14620 2 KISILGAGSFGTAIAIALS----------SKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN 71 (326)
T ss_pred EEEEECcCHHHHHHHHHHH----------HCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC
Confidence 4889999999999999997 78999999999999988887643222 2121110 01112221257
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHH--hCCCCcEEEEecChhh
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRL--AFPAIPIYARAQDMMH 516 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~--~~~~~~iia~~~~~~~ 516 (663)
+|.+++++.+.... .++..++. ..++..++...|--++
T Consensus 72 ~Dliiiavks~~~~-~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 72 ATCIILAVPTQQLR-TICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CCEEEEEeCHHHHH-HHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 89999999876432 33344443 4556567776665544
No 125
>PRK06182 short chain dehydrogenase; Validated
Probab=95.34 E-value=0.041 Score=56.72 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=59.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc------CCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i~ 476 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+.+..++.+|.+|++.++++ ...
T Consensus 4 k~vlItGasggiG~~la~~l~----------~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLA----------AQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 56888886 899999999997 7899999999999988877777788999999999877653 123
Q ss_pred CCcEEEEEcC
Q 006034 477 SPKAVMIMYT 486 (663)
Q Consensus 477 ~a~~vv~~~~ 486 (663)
+.|.+|...+
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 6787776553
No 126
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.33 E-value=0.11 Score=57.21 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=54.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHh---cC------
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS---AG------ 474 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~---a~------ 474 (663)
.+|.|+|.|.+|..+|..|. +.|++|+++|.|+++++.+.....++ + ++.-++.+++ .|
T Consensus 4 ~kI~VIGlG~~G~~~A~~La----------~~G~~V~~~D~~~~~v~~l~~g~~~~-~-e~~l~~~l~~~~~~g~l~~~~ 71 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFA----------SRQKQVIGVDINQHAVDTINRGEIHI-V-EPDLDMVVKTAVEGGYLRATT 71 (415)
T ss_pred cEEEEECcchhhHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHCCCCCc-C-CCCHHHHHHHHhhcCceeeec
Confidence 46999999999999999998 78999999999999999876544333 2 2222233321 12
Q ss_pred -CCCCcEEEEEcCCH
Q 006034 475 -ITSPKAVMIMYTDK 488 (663)
Q Consensus 475 -i~~a~~vv~~~~dd 488 (663)
.++||.++++.+++
T Consensus 72 ~~~~aDvvii~vptp 86 (415)
T PRK11064 72 TPEPADAFLIAVPTP 86 (415)
T ss_pred ccccCCEEEEEcCCC
Confidence 45899999999874
No 127
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=95.31 E-value=5.3 Score=43.24 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=55.6
Q ss_pred hCCcHHHHHHHhhhhccCC----chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHH-HHHHHHHHHHHH
Q 006034 236 LGFSDTLGAFLAGAILAET----NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLAL-LAGLIIIKTLII 310 (663)
Q Consensus 236 ~G~s~~lgAflaGl~l~~~----~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~-~~~~~l~K~~~~ 310 (663)
+.++...+|++.|+++++. +..+--.+.++.+.++..-+|-++.=+++++..+.+.+...+.+ ++..++.-....
T Consensus 245 ~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~ 324 (368)
T PF03616_consen 245 LTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAY 324 (368)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457789999999999984 11111122334456777777777777889999988765444433 333333333445
Q ss_pred HHHHhhcCCChHHHH
Q 006034 311 SAIGPRVGLTLQESV 325 (663)
Q Consensus 311 ~~~~~~~g~~~r~~~ 325 (663)
++..+..|.++..+.
T Consensus 325 fv~fr~~gkdydaav 339 (368)
T PF03616_consen 325 FVTFRVMGKDYDAAV 339 (368)
T ss_pred HHhhhhhCCChhHHH
Confidence 556677888874443
No 128
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.29 E-value=0.12 Score=53.49 Aligned_cols=112 Identities=15% Similarity=0.037 Sum_probs=68.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
-++-|+|+|++|+.+++.|.+ ...+.+++ +.|+++++.+.+.+. +.... .++.+-|. +++|.|
T Consensus 7 irIGIIG~G~IG~~~a~~L~~--------~~~~~el~aV~dr~~~~a~~~a~~~g~~~~---~~~~eell----~~~D~V 71 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDR--------GLPGLTLSAVAVRDPQRHADFIWGLRRPPP---VVPLDQLA----THADIV 71 (271)
T ss_pred eEEEEECccHHHHHHHHHHHh--------cCCCeEEEEEECCCHHHHHHHHHhcCCCcc---cCCHHHHh----cCCCEE
Confidence 479999999999999999961 01467766 679999998776653 32111 23444442 468999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecC-----hhhHHHHHHcCCCeEEcCch
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD-----MMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~-----~~~~~~l~~~Gad~vi~p~~ 533 (663)
+++++++.. ...+..+-+.+. .+++.... ++-.+..++.|....+.+-.
T Consensus 72 vi~tp~~~h-~e~~~~aL~aGk--~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa 125 (271)
T PRK13302 72 VEAAPASVL-RAIVEPVLAAGK--KAIVLSVGALLRNEDLIDLARQNGGQIIVPTGA 125 (271)
T ss_pred EECCCcHHH-HHHHHHHHHcCC--cEEEecchhHHhHHHHHHHHHHcCCEEEEcchH
Confidence 999998754 333333334443 45543221 23334456677765554443
No 129
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=95.20 E-value=4.4 Score=44.25 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=61.7
Q ss_pred hCCcHHHHHHHhhhhccCC-c---hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHH-HHH
Q 006034 236 LGFSDTLGAFLAGAILAET-N---FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKT-LII 310 (663)
Q Consensus 236 ~G~s~~lgAflaGl~l~~~-~---~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~-~~~ 310 (663)
+.++...+|++.|+++++. + ..+-..+.++.+.++..-+|-+..=|++++..+.+.+...+.+++.-++.-. ...
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999985 1 1122234555567888888888888999999998876655555444444444 344
Q ss_pred HHHHhhcCCChHHHHHH
Q 006034 311 SAIGPRVGLTLQESVRI 327 (663)
Q Consensus 311 ~~~~~~~g~~~r~~~~~ 327 (663)
++..+..|.+ -|+..+
T Consensus 323 fv~fr~mg~~-ydaaV~ 338 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAVL 338 (398)
T ss_pred HHhHHhccch-HHHHHH
Confidence 5555667777 555543
No 130
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.18 E-value=0.13 Score=52.88 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=59.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC---CCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~---~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
++.|+|+|++|..+++.|. +.+ +++.++|+++++.+.+.+. +..+. .+..+. ++++|.
T Consensus 4 ~I~iIG~G~mG~~la~~l~----------~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~---~~~~~~-----~~~adv 65 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLL----------ASGVPAKDIIVSDPSPEKRAALAEEYGVRAA---TDNQEA-----AQEADV 65 (267)
T ss_pred EEEEEechHHHHHHHHHHH----------hCCCCcceEEEEcCCHHHHHHHHHhcCCeec---CChHHH-----HhcCCE
Confidence 5899999999999999997 455 6899999999998888764 44321 122222 357899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM 514 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~ 514 (663)
+++++.++. ...++..++... +..++.-.+.-
T Consensus 66 Vil~v~~~~-~~~v~~~l~~~~-~~~vvs~~~gi 97 (267)
T PRK11880 66 VVLAVKPQV-MEEVLSELKGQL-DKLVVSIAAGV 97 (267)
T ss_pred EEEEcCHHH-HHHHHHHHHhhc-CCEEEEecCCC
Confidence 999987653 333333444432 32345444444
No 131
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.18 E-value=0.16 Score=45.17 Aligned_cols=99 Identities=21% Similarity=0.279 Sum_probs=65.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++.|+|+|++|+.-.+.+.+ ...+.+++ +.|.|+++.+...+ .+.+ .+.| -++.+++. +.|.++
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~--------~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~~--~~~ll~~~---~~D~V~ 67 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLR--------SSPDFEVVAVCDPDPERAEAFAEKYGIP-VYTD--LEELLADE---DVDAVI 67 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHH--------TTTTEEEEEEECSSHHHHHHHHHHTTSE-EESS--HHHHHHHT---TESEEE
T ss_pred EEEEECCcHHHHHHHHHHHh--------cCCCcEEEEEEeCCHHHHHHHHHHhccc-chhH--HHHHHHhh---cCCEEE
Confidence 58999999999999988862 12455654 77999999888654 5666 4444 23455543 789999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEE---ecChhhHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYAR---AQDMMHLLDL 520 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l 520 (663)
++|+++. ....+..+-+.+. ++++. +.+.+..+.+
T Consensus 68 I~tp~~~-h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l 105 (120)
T PF01408_consen 68 IATPPSS-HAEIAKKALEAGK--HVLVEKPLALTLEEAEEL 105 (120)
T ss_dssp EESSGGG-HHHHHHHHHHTTS--EEEEESSSSSSHHHHHHH
T ss_pred EecCCcc-hHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHH
Confidence 9999854 4555555555542 67664 3344444433
No 132
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.15 E-value=0.057 Score=56.60 Aligned_cols=70 Identities=17% Similarity=0.330 Sum_probs=51.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+|+.|. ..|.+|++.++..+..+.+.+.|..+. +.+- -+++||.|
T Consensus 15 kgKtVGIIG~GsIG~amA~nL~----------d~G~~ViV~~r~~~s~~~A~~~G~~v~-----sl~E----aak~ADVV 75 (335)
T PRK13403 15 QGKTVAVIGYGSQGHAQAQNLR----------DSGVEVVVGVRPGKSFEVAKADGFEVM-----SVSE----AVRTAQVV 75 (335)
T ss_pred CcCEEEEEeEcHHHHHHHHHHH----------HCcCEEEEEECcchhhHHHHHcCCEEC-----CHHH----HHhcCCEE
Confidence 3467999999999999999998 899999999865555555555666432 2222 24678999
Q ss_pred EEEcCCHHH
Q 006034 482 MIMYTDKKR 490 (663)
Q Consensus 482 v~~~~dd~~ 490 (663)
++..+|++.
T Consensus 76 ~llLPd~~t 84 (335)
T PRK13403 76 QMLLPDEQQ 84 (335)
T ss_pred EEeCCChHH
Confidence 999998643
No 133
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.11 E-value=0.14 Score=54.01 Aligned_cols=71 Identities=21% Similarity=0.366 Sum_probs=51.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCC-----------EEEecCCCH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFP-----------ILYGDASRP 467 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~-----------vi~GD~~~~ 467 (663)
++|.|+|.|.+|..++..|. +.|++|+++|.|++..+.+.+. +.. -+... +|
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~- 72 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFA----------RKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AG- 72 (311)
T ss_pred cEEEEECCCHHHHHHHHHHH----------hCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CC-
Confidence 46999999999999999997 7899999999999987776541 110 01111 11
Q ss_pred HHHHhcCCCCCcEEEEEcCCHH
Q 006034 468 AVLLSAGITSPKAVMIMYTDKK 489 (663)
Q Consensus 468 ~~L~~a~i~~a~~vv~~~~dd~ 489 (663)
+++ .++++|.|+.++.++.
T Consensus 73 --~~~-~~~~aDlVi~av~~~~ 91 (311)
T PRK06130 73 --LAA-AVSGADLVIEAVPEKL 91 (311)
T ss_pred --HHH-HhccCCEEEEeccCcH
Confidence 111 2568899999998764
No 134
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.06 E-value=0.37 Score=50.53 Aligned_cols=107 Identities=22% Similarity=0.145 Sum_probs=77.6
Q ss_pred HHHHhCCcHHHHHHHhhhhccCC-chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHH
Q 006034 232 LTQKLGFSDTLGAFLAGAILAET-NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLII 310 (663)
Q Consensus 232 l~~~~G~s~~lgAflaGl~l~~~-~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~ 310 (663)
..+..|+++..=|.+.|++++.. +.+++..+-++--...+..+=-+..|++++++++.+.-...+.+.+..+..-++..
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~ 110 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFLFA 110 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 45566777888899999999954 33333333333335677777788999999999997653445555666677778888
Q ss_pred HHHHhhcCCChHHHHHHHHhhhhhhhHH
Q 006034 311 SAIGPRVGLTLQESVRIGLLLSQGGEFA 338 (663)
Q Consensus 311 ~~~~~~~g~~~r~~~~~g~~l~~~G~~~ 338 (663)
++.++++|+|++.+..+|.+-+-=|.-+
T Consensus 111 ~~lg~~lgld~~~a~Lia~GssICGasA 138 (334)
T COG2855 111 YFLGKLLGLDKKLALLIAAGSSICGASA 138 (334)
T ss_pred HHHHHHhCCCHHHHHHHHccchhhHHHH
Confidence 8889999999999999998655555333
No 135
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.04 E-value=0.078 Score=57.31 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=55.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
+|.|+|.|.+|..+++.|. +.|+++.+.+.|++..+.....+..+..-..++ +++ -++++|.||.+
T Consensus 2 ~I~iIG~GliG~siA~~L~----------~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~aDlVila 67 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIK----------AAGPDVFIIGYDPSAAQLARALGFGVIDELAAD---LQR-AAAEADLIVLA 67 (359)
T ss_pred eEEEEEeCHHHHHHHHHHH----------hcCCCeEEEEeCCCHHHHHHHhcCCCCcccccC---HHH-HhcCCCEEEEe
Confidence 6899999999999999998 788999999999887655544443332211112 222 25789999999
Q ss_pred cCCHHHHHHHHHHHH
Q 006034 485 YTDKKRTIEAVQRLR 499 (663)
Q Consensus 485 ~~dd~~n~~~~~~~r 499 (663)
++.+. ....+...+
T Consensus 68 vP~~~-~~~vl~~l~ 81 (359)
T PRK06545 68 VPVDA-TAALLAELA 81 (359)
T ss_pred CCHHH-HHHHHHHHh
Confidence 99864 334444444
No 136
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=95.04 E-value=0.27 Score=54.95 Aligned_cols=114 Identities=17% Similarity=0.205 Sum_probs=73.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCC--EEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP--ILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~--vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|-++|.|++|..+++.|. +.|++|.+.|+++++++.+.+.+.. -+.+ ..+.+-+. ..++++|.|+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~----------~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~-~~s~~e~v-~~l~~~dvIi 68 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMA----------DHGFTVSVYNRTPEKTDEFLAEHAKGKKIVG-AYSIEEFV-QSLERPRKIM 68 (467)
T ss_pred CEEEEeeHHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHHHhhccCCCCcee-cCCHHHHH-hhcCCCCEEE
Confidence 3678999999999999998 7899999999999999988864111 0111 23333332 1356789888
Q ss_pred EEcCCHHHHHHHHHHH-HHhCCCCcEEEEecC------hhhHHHHHHcCCCeEEcC
Q 006034 483 IMYTDKKRTIEAVQRL-RLAFPAIPIYARAQD------MMHLLDLKKAGATDAILE 531 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~-r~~~~~~~iia~~~~------~~~~~~l~~~Gad~vi~p 531 (663)
++..+++..-.+...+ ..+.++ .++.-..+ .+..+.+++.|+..+=.|
T Consensus 69 l~v~~~~~v~~Vi~~l~~~L~~g-~iIID~gns~~~~t~~~~~~l~~~gi~fvdap 123 (467)
T TIGR00873 69 LMVKAGAPVDAVINQLLPLLEKG-DIIIDGGNSHYPDTERRYKELKAKGILFVGSG 123 (467)
T ss_pred EECCCcHHHHHHHHHHHhhCCCC-CEEEECCCcCHHHHHHHHHHHHhcCCEEEcCC
Confidence 8887754322232333 334555 56665543 224456677788765555
No 137
>PRK03818 putative transporter; Validated
Probab=95.02 E-value=0.86 Score=52.09 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=49.0
Q ss_pred HHHHHhhhhccCC--chhhHHHhhhhc-hhhhhHHHHHHHhccccChhHHhh----hHHHHHHHHHHHHHHHHHHHHHHH
Q 006034 242 LGAFLAGAILAET--NFRTQIEADIRP-FRGLLLGLFFVTTGSSIDIELLFR----EWPNVLALLAGLIIIKTLIISAIG 314 (663)
Q Consensus 242 lgAflaGl~l~~~--~~~~~i~~~~~~-~~~~~~plFFv~vG~~l~~~~l~~----~~~~~l~~~~~~~l~K~~~~~~~~ 314 (663)
-|++++|++++.. .++.++.+.... ++++...+|...+|.+.-+..+.. .|...+. .++..+.-.+.++...
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~-~~~~~~~~~~~~~~~~ 112 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLF-AVLIVILGGLVTAILH 112 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHH
Confidence 4777888888862 122223333333 478999999999999998766532 2333222 2223333344455666
Q ss_pred hhcCCChHHH
Q 006034 315 PRVGLTLQES 324 (663)
Q Consensus 315 ~~~g~~~r~~ 324 (663)
+++|+++-..
T Consensus 113 ~~~~~~~~~~ 122 (552)
T PRK03818 113 KLFGIPLPVM 122 (552)
T ss_pred HHhCCCHHHH
Confidence 7788876633
No 138
>PLN02712 arogenate dehydrogenase
Probab=95.00 E-value=0.24 Score=57.81 Aligned_cols=108 Identities=19% Similarity=0.250 Sum_probs=66.2
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
....+|.|+|+|++|+.+++.|. +.|++|++.|++++. +.+.+.|... .++.+-+.+ +++|.
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~----------~~G~~V~~~dr~~~~-~~a~~~Gv~~----~~~~~el~~---~~aDv 428 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMV----------KQGHTVLAYSRSDYS-DEAQKLGVSY----FSDADDLCE---EHPEV 428 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHH----------HCcCEEEEEECChHH-HHHHHcCCeE----eCCHHHHHh---cCCCE
Confidence 35568999999999999999997 678999999998654 4455555431 123332211 35899
Q ss_pred EEEEcCCHHHHHHHHHHHH--HhCCCCcEEEEecCh--hhHHHHHH---cCCCeE
Q 006034 481 VMIMYTDKKRTIEAVQRLR--LAFPAIPIYARAQDM--MHLLDLKK---AGATDA 528 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r--~~~~~~~iia~~~~~--~~~~~l~~---~Gad~v 528 (663)
|++++..+. +..++.... .+.|+ .+++-+.+- ...+.+++ .|.+.+
T Consensus 429 VILavP~~~-~~~vi~~l~~~~lk~g-~ivvDv~SvK~~~~~~~~~~l~~~~~~v 481 (667)
T PLN02712 429 ILLCTSILS-TEKVLKSLPFQRLKRS-TLFVDVLSVKEFPRNLFLQHLPQDFDIL 481 (667)
T ss_pred EEECCChHH-HHHHHHHHHHhcCCCC-cEEEECCCccHHHHHHHHHhccCCCceE
Confidence 999998643 333333333 23344 566655433 23333433 355544
No 139
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=94.97 E-value=0.15 Score=53.85 Aligned_cols=66 Identities=21% Similarity=0.298 Sum_probs=48.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEe-CChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFD-LNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid-~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+++.|+|+|++|+.+++.|. +.|.++++.+ .+++..+.+.+.|..+. +..+. +++||.|+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~----------~sG~~Viv~~~~~~~~~~~a~~~Gv~~~----s~~ea-----~~~ADiVv 64 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLR----------DSGLNVIVGLRKGGASWKKATEDGFKVG----TVEEA-----IPQADLIM 64 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHH----------HCCCeEEEEECcChhhHHHHHHCCCEEC----CHHHH-----HhcCCEEE
Confidence 56999999999999999997 6788877654 44556666666666421 12222 46789999
Q ss_pred EEcCCH
Q 006034 483 IMYTDK 488 (663)
Q Consensus 483 ~~~~dd 488 (663)
+++.++
T Consensus 65 LaVpp~ 70 (314)
T TIGR00465 65 NLLPDE 70 (314)
T ss_pred EeCCcH
Confidence 999986
No 140
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.95 E-value=0.56 Score=54.96 Aligned_cols=71 Identities=18% Similarity=0.288 Sum_probs=56.8
Q ss_pred hhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--cCCChHHHHHHHHhhhhhhhH
Q 006034 267 FRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPR--VGLTLQESVRIGLLLSQGGEF 337 (663)
Q Consensus 267 ~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~--~g~~~r~~~~~g~~l~~~G~~ 337 (663)
+..+.+++--+..|++++...+...|..+..+++..+..-++.+.+++++ .|++|..++.+|.+++|-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 56778888888999999999999888887766666666666666666554 499999999999999887654
No 141
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=94.93 E-value=0.016 Score=56.41 Aligned_cols=71 Identities=23% Similarity=0.403 Sum_probs=48.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcC----------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAG---------- 474 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~---------- 474 (663)
+|.|+|.|.+|..+|-.|. +.|++|+.+|.|+++++.+.+...++ + ++..++.+++..
T Consensus 2 ~I~ViGlGyvGl~~A~~lA----------~~G~~V~g~D~~~~~v~~l~~g~~p~-~-E~~l~~ll~~~~~~~~l~~t~~ 69 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALA----------EKGHQVIGVDIDEEKVEALNNGELPI-Y-EPGLDELLKENVSAGRLRATTD 69 (185)
T ss_dssp EEEEE--STTHHHHHHHHH----------HTTSEEEEE-S-HHHHHHHHTTSSSS---CTTHHHHHHHHHHTTSEEEESE
T ss_pred EEEEECCCcchHHHHHHHH----------hCCCEEEEEeCChHHHHHHhhccccc-c-ccchhhhhccccccccchhhhh
Confidence 5889999999999999998 89999999999999999988744444 2 455556665432
Q ss_pred ----CCCCcEEEEEcCC
Q 006034 475 ----ITSPKAVMIMYTD 487 (663)
Q Consensus 475 ----i~~a~~vv~~~~d 487 (663)
++++|+++++.+.
T Consensus 70 ~~~ai~~adv~~I~VpT 86 (185)
T PF03721_consen 70 IEEAIKDADVVFICVPT 86 (185)
T ss_dssp HHHHHHH-SEEEE----
T ss_pred hhhhhhccceEEEecCC
Confidence 4468888777753
No 142
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.91 E-value=0.084 Score=55.16 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=35.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 453 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~ 453 (663)
++|.|+|.|.+|..+|..+. ..|++|+++|.|++..+.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTA----------FHGFDVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHHH
Confidence 47999999999999999997 78999999999998876654
No 143
>PRK08507 prephenate dehydrogenase; Validated
Probab=94.90 E-value=0.092 Score=54.47 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=58.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|.|+|.|.+|..+++.|. +.|+ ++.+.|+++++.+.+.+.|.... .++. +++ .++|.||
T Consensus 2 ~I~iIG~G~mG~sla~~l~----------~~g~~~~v~~~d~~~~~~~~~~~~g~~~~---~~~~---~~~--~~aD~Vi 63 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALK----------EKGLISKVYGYDHNELHLKKALELGLVDE---IVSF---EEL--KKCDVIF 63 (275)
T ss_pred EEEEEccCHHHHHHHHHHH----------hcCCCCEEEEEcCCHHHHHHHHHCCCCcc---cCCH---HHH--hcCCEEE
Confidence 4889999999999999997 5554 68888999999888877664211 1122 222 2489999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
++++.+...-.+ ..++.+.++ .++.-+.+
T Consensus 64 lavp~~~~~~~~-~~l~~l~~~-~iv~d~gs 92 (275)
T PRK08507 64 LAIPVDAIIEIL-PKLLDIKEN-TTIIDLGS 92 (275)
T ss_pred EeCcHHHHHHHH-HHHhccCCC-CEEEECcc
Confidence 999986543333 233334445 45554443
No 144
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=94.88 E-value=0.46 Score=54.05 Aligned_cols=114 Identities=15% Similarity=0.219 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhCCcHHHHHHHhhhhccCCchhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHH
Q 006034 226 VAGTSLLTQKLGFSDTLGAFLAGAILAETNFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIII 305 (663)
Q Consensus 226 ~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~ 305 (663)
+.+...+++.+++++.++-+++|++++..+....+.-.-+.+..++.|......|.++|++.+.+++..++.+.+..++.
T Consensus 10 ~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vli 89 (525)
T TIGR00831 10 ATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVV 89 (525)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33455678889999999999999988853221111111112345788888899999999999988876665554444444
Q ss_pred HHHH-HHHHHhhcCCChHHHHHHHHhhhhhhhHHH
Q 006034 306 KTLI-ISAIGPRVGLTLQESVRIGLLLSQGGEFAF 339 (663)
Q Consensus 306 K~~~-~~~~~~~~g~~~r~~~~~g~~l~~~G~~~l 339 (663)
-.+. .+...+..++|+..++.+|..++|...+..
T Consensus 90 t~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 90 TTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 4433 333334578999999999999888876553
No 145
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=94.87 E-value=0.22 Score=51.10 Aligned_cols=121 Identities=21% Similarity=0.205 Sum_probs=75.9
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEE-EeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvv-id~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+|.|+|+ |++|+.+++.+.+ .++.+++. +|.++++.+...+.+.. ..+|.+-+. +++|+|+
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~---------~~~~elvav~d~~~~~~~~~~~~~i~----~~~dl~~ll----~~~DvVi 65 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEA---------AEDLELVAAVDRPGSPLVGQGALGVA----ITDDLEAVL----ADADVLI 65 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEecCCccccccCCCCcc----ccCCHHHhc----cCCCEEE
Confidence 6899998 9999999999862 45666554 78888765433111111 123333332 3689887
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEe--cChhhHHHHHH--cCCCeEEcCchHHHHHHHHHHHH
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARA--QDMMHLLDLKK--AGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~--~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
..++.+ .....+..+.+.+. +++.-. -++++.+.+.+ .++..++.|+.-.+..+...+++
T Consensus 66 d~t~p~-~~~~~~~~al~~G~--~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~ 129 (257)
T PRK00048 66 DFTTPE-ATLENLEFALEHGK--PLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAE 129 (257)
T ss_pred ECCCHH-HHHHHHHHHHHcCC--CEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHH
Confidence 666543 33556666666664 444332 15556655554 67778999998777777766655
No 146
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.85 E-value=0.28 Score=53.57 Aligned_cols=71 Identities=23% Similarity=0.235 Sum_probs=49.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHH------------h
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL------------S 472 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~------------~ 472 (663)
+|.|+|.|.+|..+|..+. .|++|+++|.|+++++.+.+...+. +.... ++.++ .
T Consensus 2 kI~VIGlGyvGl~~A~~lA-----------~G~~VigvD~d~~kv~~l~~g~~~~-~e~~l-~~~l~~~~~~l~~t~~~~ 68 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-----------QNHEVVALDILPSRVAMLNDRISPI-VDKEI-QQFLQSDKIHFNATLDKN 68 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-----------hCCcEEEEECCHHHHHHHHcCCCCC-CCcCH-HHHHHhCCCcEEEecchh
Confidence 4789999999999998774 4899999999999999888632222 11111 01110 0
Q ss_pred cCCCCCcEEEEEcCCH
Q 006034 473 AGITSPKAVMIMYTDK 488 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd 488 (663)
.-++++|.++++++++
T Consensus 69 ~~~~~ad~vii~Vpt~ 84 (388)
T PRK15057 69 EAYRDADYVIIATPTD 84 (388)
T ss_pred hhhcCCCEEEEeCCCC
Confidence 1147899999999865
No 147
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.85 E-value=0.063 Score=56.21 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=35.3
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
++|.|+|.|.+|..++..|. ..|++|+++|.|++..+..
T Consensus 4 ~~I~ViGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFA----------RTGYDVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHHH
Confidence 47999999999999999997 7899999999999988754
No 148
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.84 E-value=6.2 Score=41.57 Aligned_cols=102 Identities=20% Similarity=0.169 Sum_probs=71.6
Q ss_pred cccCchhHHHHHHHHHHhccCCCcC--Cchh----HHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHH
Q 006034 4 RILCRSQILGFFFAGIVLNQLGIIR--NLTD----VKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTL 77 (663)
Q Consensus 4 ~rl~lP~ivg~ilaGillGp~glv~--~~~~----l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~ 77 (663)
...++|..+--|+.||++|.+...+ -... -+.+-++|+++ -|.+++++++.+.+.+.+.+....+..+++
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~G~~~v~~~~~~l~~t~~ 108 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADVGGSGVLIIAITLSSTFL 108 (334)
T ss_pred hhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHcCccHHHHHHHHHHHHHH
Confidence 4567889999999999999643221 1122 34577777775 489999999999998888777776666665
Q ss_pred HHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHH
Q 006034 78 AFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVL 130 (663)
Q Consensus 78 ~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~ 130 (663)
....+ .-++| .++..++++|+-.+....+-++
T Consensus 109 ~~~~l-------------g~~lg--------ld~~~a~Lia~GssICGasAia 140 (334)
T COG2855 109 FAYFL-------------GKLLG--------LDKKLALLIAAGSSICGASAIA 140 (334)
T ss_pred HHHHH-------------HHHhC--------CCHHHHHHHHccchhhHHHHHH
Confidence 54433 23566 7899999999777665544443
No 149
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.82 E-value=0.97 Score=54.31 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhCCcHHHHHHHhhhhccCCchh--h---------HHHhhhhchhhhhHHHHHHHhccccChhHHhhhHH
Q 006034 225 TVAGTSLLTQKLGFSDTLGAFLAGAILAETNFR--T---------QIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWP 293 (663)
Q Consensus 225 ~~~~~~~l~~~~G~s~~lgAflaGl~l~~~~~~--~---------~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~ 293 (663)
+.-.+.++...+|.+.++|=.++|++++.+-.+ + +-.+.++.+..+-.-+|.+.+|+++|+..+.+...
T Consensus 54 ~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k 133 (832)
T PLN03159 54 TTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGK 133 (832)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcch
Confidence 334556677888899999999999988864111 1 11224555666777778889999999999876533
No 150
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.79 E-value=0.08 Score=56.43 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=60.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE--ec-----CCCHHHHHhcCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--GD-----ASRPAVLLSAGITS 477 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~--GD-----~~~~~~L~~a~i~~ 477 (663)
+|.|+|.|.+|..++..|. +.|++|.+.++++++.+.+.+.+.+..+ |. ..-.+.++++ +++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~----------~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~-~~~ 74 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAA----------SKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA-LAG 74 (328)
T ss_pred eEEEECcCHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH-HcC
Confidence 6999999999999999997 7899999999999988887764221111 10 0001112222 367
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
+|.+++++.++.. -..++.+.|...++...+
T Consensus 75 aD~Vi~~v~~~~~----~~v~~~l~~~~~vi~~~~ 105 (328)
T PRK14618 75 ADFAVVAVPSKAL----RETLAGLPRALGYVSCAK 105 (328)
T ss_pred CCEEEEECchHHH----HHHHHhcCcCCEEEEEee
Confidence 9999999998742 222355555544554444
No 151
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.77 E-value=0.042 Score=58.02 Aligned_cols=70 Identities=24% Similarity=0.295 Sum_probs=56.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+++|.|. |-+|+.+++.|. +.|++|++++++++..+...+.+..++.+|.+|++.++++ ++++|.++-
T Consensus 2 ~vlItG~~G~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~-~~~~d~vi~ 70 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLL----------EQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKA-VAGCRALFH 70 (328)
T ss_pred eEEEECCccchhHHHHHHHH----------HCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHH-HhCCCEEEE
Confidence 4788885 999999999998 7899999999988775555455788999999999888764 356777765
Q ss_pred Ec
Q 006034 484 MY 485 (663)
Q Consensus 484 ~~ 485 (663)
+.
T Consensus 71 ~a 72 (328)
T TIGR03466 71 VA 72 (328)
T ss_pred ec
Confidence 43
No 152
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.75 E-value=0.099 Score=57.15 Aligned_cols=73 Identities=21% Similarity=0.359 Sum_probs=55.2
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH------HHH--hcCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK------ESR--KLGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~------~~~--~~~~~vi~GD~~~~~~L~~a 473 (663)
..+++|.|. |.+|+.+++.|. ++|++|++++++++..+ ... ..+..++.||.+|++.++++
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll----------~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~ 129 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELV----------RRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKV 129 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHH
Confidence 346888886 999999999997 78999999999876432 111 14678999999999988765
Q ss_pred CCC---CCcEEEEEc
Q 006034 474 GIT---SPKAVMIMY 485 (663)
Q Consensus 474 ~i~---~a~~vv~~~ 485 (663)
--+ ++|.|+.+.
T Consensus 130 ~~~~~~~~D~Vi~~a 144 (390)
T PLN02657 130 LFSEGDPVDVVVSCL 144 (390)
T ss_pred HHHhCCCCcEEEECC
Confidence 222 688887543
No 153
>PRK06953 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.13 Score=51.21 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=57.5
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc--CC--CCCc
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GI--TSPK 479 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a--~i--~~a~ 479 (663)
.++|.| .|.+|+.+++.|. ++|++|++++++++..+.+.+.+...+.+|.+|++.++++ .+ .+.|
T Consensus 3 ~vlvtG~sg~iG~~la~~L~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYR----------ADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred eEEEEcCCCchhHHHHHHHH----------hCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 577777 5899999999997 7899999999999988888777778899999999988763 22 3467
Q ss_pred EEEEEc
Q 006034 480 AVMIMY 485 (663)
Q Consensus 480 ~vv~~~ 485 (663)
.++...
T Consensus 73 ~vi~~a 78 (222)
T PRK06953 73 AAVYVA 78 (222)
T ss_pred EEEECC
Confidence 766643
No 154
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.67 E-value=0.28 Score=51.94 Aligned_cols=114 Identities=14% Similarity=0.151 Sum_probs=70.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEE--ecCCC--HHHHHh-cCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILY--GDASR--PAVLLS-AGITS 477 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~--GD~~~--~~~L~~-a~i~~ 477 (663)
+.+|.|+|.|.+|..++..|. +.|++|.++.+++. +...+.+...-. |+..- ...... ...+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~----------~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLA----------RAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPP 72 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHH----------HCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCC
Confidence 347999999999999999998 78999999999874 445555543321 21100 000000 12457
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH-cCCCeEE
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK-AGATDAI 529 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~-~Gad~vi 529 (663)
+|.+++++..... ..++..++. ..++..++...|--.+.+.+.+ .+-.+|+
T Consensus 73 ~D~vilavK~~~~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~ 125 (313)
T PRK06249 73 CDWVLVGLKTTAN-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLL 125 (313)
T ss_pred CCEEEEEecCCCh-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEE
Confidence 8999999876432 233333443 4566667777777777666654 3444443
No 155
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.65 E-value=0.51 Score=48.86 Aligned_cols=67 Identities=19% Similarity=0.306 Sum_probs=49.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++.++|+|++|..+++.|. +.| .++.+.|+++++.+.+.+ .+..+. .+..+. ++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~----------~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~---~~~~e~-----~~~a 64 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMI----------NKNIVSPDQIICSDLNVSNLKNASDKYGITIT---TNNNEV-----ANSA 64 (272)
T ss_pred CeEEEECccHHHHHHHHHHH----------HCCCCCCceEEEECCCHHHHHHHHHhcCcEEe---CCcHHH-----HhhC
Confidence 36999999999999999997 333 469999999999888775 553221 122333 3477
Q ss_pred cEEEEEcCCH
Q 006034 479 KAVMIMYTDK 488 (663)
Q Consensus 479 ~~vv~~~~dd 488 (663)
|.++.+..++
T Consensus 65 DiIiLavkP~ 74 (272)
T PRK12491 65 DILILSIKPD 74 (272)
T ss_pred CEEEEEeChH
Confidence 9898888864
No 156
>PLN02427 UDP-apiose/xylose synthase
Probab=94.63 E-value=0.073 Score=57.98 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=54.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a~ 474 (663)
.+|+|.|. |-+|+.+++.|. ++ +++|+++|++++..+.+.+ .+..++.||.+|++.++++
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~----------~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~- 83 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLM----------TETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGL- 83 (386)
T ss_pred cEEEEECCcchHHHHHHHHHH----------hcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHH-
Confidence 46999986 999999999997 55 6899999988776655432 2477899999999988765
Q ss_pred CCCCcEEEEE
Q 006034 475 ITSPKAVMIM 484 (663)
Q Consensus 475 i~~a~~vv~~ 484 (663)
++++|.||=+
T Consensus 84 ~~~~d~ViHl 93 (386)
T PLN02427 84 IKMADLTINL 93 (386)
T ss_pred hhcCCEEEEc
Confidence 3467877643
No 157
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.60 E-value=0.28 Score=51.75 Aligned_cols=93 Identities=16% Similarity=0.232 Sum_probs=59.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-----------hcCCCE------EEe--cC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----------KLGFPI------LYG--DA 464 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-----------~~~~~v------i~G--D~ 464 (663)
.+|.|+|.|.+|..++..|. +.|++|++.|++++..+... +.+..- ..+ +.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la----------~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~ 72 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFA----------RAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV 72 (308)
T ss_pred cEEEEECccHHHHHHHHHHH----------HCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE
Confidence 36999999999999999998 78999999999998776543 222100 000 01
Q ss_pred CCHHHHHhcCCCCCcEEEEEcCCHH-HHHHHHHHHHHhCCCCcEEE
Q 006034 465 SRPAVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 465 ~~~~~L~~a~i~~a~~vv~~~~dd~-~n~~~~~~~r~~~~~~~iia 509 (663)
+ ..+.+ -++++|.++.++.++. .+......+++..++-.+++
T Consensus 73 ~--~~~~~-a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ 115 (308)
T PRK06129 73 T--DSLAD-AVADADYVQESAPENLELKRALFAELDALAPPHAILA 115 (308)
T ss_pred E--CcHHH-hhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE
Confidence 1 11222 2468999999998863 33443444555544434554
No 158
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.59 E-value=0.11 Score=51.86 Aligned_cols=93 Identities=13% Similarity=0.129 Sum_probs=58.6
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEe-------cC-CCHHHHHhcCC
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYG-------DA-SRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~G-------D~-~~~~~L~~a~i 475 (663)
+|.|+| .|++|..+++.|. +.|++|++.++++++.+.+.+...+.+.. .. ++.+. +
T Consensus 2 kI~IIGG~G~mG~ala~~L~----------~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea-----~ 66 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLA----------KAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEA-----A 66 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHH----------hCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHH-----H
Confidence 488997 8999999999997 77899999999999887765421111100 01 22222 4
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh
Q 006034 476 TSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM 514 (663)
Q Consensus 476 ~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~ 514 (663)
+++|.+++++..+... .++...+....+ +++.-+.+.
T Consensus 67 ~~aDvVilavp~~~~~-~~l~~l~~~l~~-~vvI~~~ng 103 (219)
T TIGR01915 67 KRADVVILAVPWDHVL-KTLESLRDELSG-KLVISPVVP 103 (219)
T ss_pred hcCCEEEEECCHHHHH-HHHHHHHHhccC-CEEEEeccC
Confidence 5789999998876432 222333333234 555555444
No 159
>PLN00016 RNA-binding protein; Provisional
Probab=94.58 E-value=0.12 Score=56.32 Aligned_cols=91 Identities=16% Similarity=0.108 Sum_probs=62.4
Q ss_pred CCCcEEEE----cC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH-----------HHHhcCCCEEEecCC
Q 006034 402 GSEPVVIV----GF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK-----------ESRKLGFPILYGDAS 465 (663)
Q Consensus 402 ~~~~viI~----G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~-----------~~~~~~~~vi~GD~~ 465 (663)
..++|+|+ |. |.+|+.+++.|. +.|++|++++++++..+ .+.+.+..++.||.+
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~----------~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~ 120 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELV----------KAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPA 120 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHH----------HCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHH
Confidence 44679999 65 999999999997 78999999999876432 223456889999998
Q ss_pred CHHHHHhcCCCCCcEEEEEcCCHH-HHHHHHHHHHHhCCC
Q 006034 466 RPAVLLSAGITSPKAVMIMYTDKK-RTIEAVQRLRLAFPA 504 (663)
Q Consensus 466 ~~~~L~~a~i~~a~~vv~~~~dd~-~n~~~~~~~r~~~~~ 504 (663)
|.+.+. ...++|.|+-+.+.+. ....++..+++.+.+
T Consensus 121 d~~~~~--~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvk 158 (378)
T PLN00016 121 DVKSKV--AGAGFDVVYDNNGKDLDEVEPVADWAKSPGLK 158 (378)
T ss_pred HHHhhh--ccCCccEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 833221 2346888776655432 223345556666644
No 160
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=94.55 E-value=0.38 Score=53.97 Aligned_cols=116 Identities=19% Similarity=0.273 Sum_probs=76.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc----CCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~----~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
..+|-++|.|.+|..+|+.|. +.|++|.|-|+++++++.+.+. |...+.+ ..+++-+- .+++++
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~----------~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~-a~s~~e~v-~~l~~~ 73 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIA----------EKGFPISVYNRTTSKVDETVERAKKEGNLPLYG-FKDPEDFV-LSIQKP 73 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHH----------hCCCeEEEECCCHHHHHHHHHhhhhcCCccccc-CCCHHHHH-hcCCCC
Confidence 346999999999999999998 8999999999999999887753 3221111 12232221 256679
Q ss_pred cEEEEEcCCHHHHHHHH-HHHHHhCCCCcEEEEecCh------hhHHHHHHcCCCeEEcC
Q 006034 479 KAVMIMYTDKKRTIEAV-QRLRLAFPAIPIYARAQDM------MHLLDLKKAGATDAILE 531 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~-~~~r~~~~~~~iia~~~~~------~~~~~l~~~Gad~vi~p 531 (663)
|.|+.+..+++.--.+. ..+..+.|+ .++.-..+. +..+.+++.|+..+=.|
T Consensus 74 dvIi~~v~~~~aV~~Vi~gl~~~l~~G-~iiID~sT~~~~~t~~~~~~l~~~Gi~fldap 132 (493)
T PLN02350 74 RSVIILVKAGAPVDQTIKALSEYMEPG-DCIIDGGNEWYENTERRIKEAAEKGLLYLGMG 132 (493)
T ss_pred CEEEEECCCcHHHHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 99999998875432222 223334555 666655443 33455677788766555
No 161
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.54 E-value=0.14 Score=53.47 Aligned_cols=142 Identities=16% Similarity=0.203 Sum_probs=79.8
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHH----------
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPA---------- 468 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~---------- 468 (663)
++|.|+|.|.+|..+|..+. ..|++|++.|.+++..+...+. ...+-.|-.++++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a----------~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~ 75 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCA----------RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF 75 (286)
T ss_pred cEEEEEcccHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe
Confidence 47999999999999999997 7899999999999987663210 0001112111110
Q ss_pred --HHHhcCCCCCcEEEEEcCCHHHHHH-HHHHHHHh--CCCCcEEEEecChhhHHHHHHc--------CCCeEEcCchHH
Q 006034 469 --VLLSAGITSPKAVMIMYTDKKRTIE-AVQRLRLA--FPAIPIYARAQDMMHLLDLKKA--------GATDAILENAET 535 (663)
Q Consensus 469 --~L~~a~i~~a~~vv~~~~dd~~n~~-~~~~~r~~--~~~~~iia~~~~~~~~~~l~~~--------Gad~vi~p~~~~ 535 (663)
-++ .++++|.|+-+..+|.+--. +-..+.+. .|+ .+++...+.-....+... |. +.++|...+
T Consensus 76 ~~~~~--~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~-~il~snTS~~~~~~la~~~~~~~r~~g~-hf~~P~~~~ 151 (286)
T PRK07819 76 TTDLG--DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPD-AVLASNTSSIPIMKLAAATKRPGRVLGL-HFFNPVPVL 151 (286)
T ss_pred eCCHH--HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCC-cEEEECCCCCCHHHHHhhcCCCccEEEE-ecCCCcccC
Confidence 111 14789999999888743222 22233344 344 455544433233333221 22 344543222
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHh
Q 006034 536 SLQLGSKLLKGFGVMSDDVTFLRQLVR 562 (663)
Q Consensus 536 ~~~la~~~~~~~~~~~~~~~~~~~~~~ 562 (663)
... ++...-+.++.+++.....+.
T Consensus 152 ~lv---Elv~~~~T~~~~~~~~~~~~~ 175 (286)
T PRK07819 152 PLV---ELVPTLVTSEATVARAEEFAS 175 (286)
T ss_pred ceE---EEeCCCCCCHHHHHHHHHHHH
Confidence 111 344445666777777766654
No 162
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.51 E-value=0.28 Score=51.02 Aligned_cols=37 Identities=24% Similarity=0.536 Sum_probs=33.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK 450 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~ 450 (663)
++|.|+|.|.+|..++..+. ..|++|+++|.|+++.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la----------~~g~~V~~~d~~~~~~~ 40 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCA----------VAGYDVVMVDISDAAVD 40 (282)
T ss_pred cEEEEEccCHHHHHHHHHHH----------HCCCceEEEeCCHHHHH
Confidence 36999999999999999997 77999999999999885
No 163
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=94.49 E-value=0.19 Score=52.15 Aligned_cols=108 Identities=17% Similarity=0.101 Sum_probs=67.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH--HHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP--AVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~--~~L~~a~i~~a~~ 480 (663)
..+++|+|.|.+|..+++.|+ +.|+.+.+++.|+......+.....+ .|+ +........+||.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~----------~~g~~v~i~g~d~~~~~~~~a~~lgv-----~d~~~~~~~~~~~~~aD~ 67 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALK----------EAGLVVRIIGRDRSAATLKAALELGV-----IDELTVAGLAEAAAEADL 67 (279)
T ss_pred CcEEEEECCchHHHHHHHHHH----------HcCCeEEEEeecCcHHHHHHHhhcCc-----ccccccchhhhhcccCCE
Confidence 467999999999999999998 89999988888877654444322222 222 1112345678999
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHcCCC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGAT 526 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~--~~~~~l~~~Gad 526 (663)
||++++=....-.+...+..+.++ .++.-+.+. .-.+.+++.+.+
T Consensus 68 VivavPi~~~~~~l~~l~~~l~~g-~iv~Dv~S~K~~v~~a~~~~~~~ 114 (279)
T COG0287 68 VIVAVPIEATEEVLKELAPHLKKG-AIVTDVGSVKSSVVEAMEKYLPG 114 (279)
T ss_pred EEEeccHHHHHHHHHHhcccCCCC-CEEEecccccHHHHHHHHHhccC
Confidence 999998654444444444444444 466555443 233444554433
No 164
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.49 E-value=0.085 Score=52.85 Aligned_cols=73 Identities=15% Similarity=0.113 Sum_probs=55.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc---
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a--- 473 (663)
.+.++|.|. |.+|+.+++.|. +.|++|+++++++++.+.+.+ .+.+++.+|.+|++.++++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALL----------AEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDA 75 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHH----------HCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHH
Confidence 356888885 999999999997 679999999999987665543 3467789999999876542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
.....|.++...
T Consensus 76 ~~~~~~~~d~vi~~a 90 (237)
T PRK07326 76 IVAAFGGLDVLIANA 90 (237)
T ss_pred HHHHcCCCCEEEECC
Confidence 123678777554
No 165
>PRK09291 short chain dehydrogenase; Provisional
Probab=94.48 E-value=0.12 Score=52.40 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=57.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhcCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
++++|.|. |.+|+.+++.|. +.|++|++.+++++..+.+.+ .+..++.+|.+|++.++++--.
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 72 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLA----------RKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEW 72 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC
Confidence 46888886 899999999997 789999999999877655543 2467889999999999887444
Q ss_pred CCcEEEEEc
Q 006034 477 SPKAVMIMY 485 (663)
Q Consensus 477 ~a~~vv~~~ 485 (663)
+.|.+|-..
T Consensus 73 ~id~vi~~a 81 (257)
T PRK09291 73 DVDVLLNNA 81 (257)
T ss_pred CCCEEEECC
Confidence 788777654
No 166
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]
Probab=94.48 E-value=0.31 Score=53.14 Aligned_cols=224 Identities=14% Similarity=0.112 Sum_probs=129.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HH-----hcCCCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SR-----KLGFPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~-----~~~~~vi~GD~~~~~~L~~ 472 (663)
..+||++|-----...+-+.|++.-+- ....++-++=.+|...+. +. +...+.++|....++-|++
T Consensus 286 ~e~hvvv~~ttl~~~~i~dfl~efyah-----p~~q~~~ivllsp~eld~~~rmllkiplwnnrvhyv~gs~lrd~dl~r 360 (1087)
T KOG3193|consen 286 VESHVVVTITTLEVEFIRDFLEEFYAH-----PENQRIQIVLLSPAELDNQTRMLLKIPLWNNRVHYVRGSSLRDEDLER 360 (1087)
T ss_pred ccceEEEEEeeeeHHHHHHHHHHHhcC-----cccccEEEEEechHHhcchhhhheeccccccceeeecccccccchhhh
Confidence 457999998776667777777532222 123344444444544322 11 3568889999999999999
Q ss_pred cCCCCCcEEEEEcC--------CHHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHHcCCCeEEcCchHHHHHHHHHHH
Q 006034 473 AGITSPKAVMIMYT--------DKKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKKAGATDAILENAETSLQLGSKLL 544 (663)
Q Consensus 473 a~i~~a~~vv~~~~--------dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~la~~~~ 544 (663)
|++..+++..+... .||.+++-.-..|...|+++-++.+-.+++.--.+ -|.++|++.+.-=-.+|+...
T Consensus 361 a~~~~s~acfilsar~~~~k~a~dehtilrswaikdfapnv~qyvqifr~e~k~hi~--~ae~~icedefkyallannc~ 438 (1087)
T KOG3193|consen 361 ANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFAPNVKQYVQIFRAETKMHIE--HAEVLICEDEFKYALLANNCI 438 (1087)
T ss_pred hhhcccchheeeehhhhccccccchhhHHHHHhhhhcCCchHHHhhhhchhhhhhhh--hheeEEehhhHHHHHHhcCCc
Confidence 99999987665542 37788888888999999998777776666644333 356788887543333444433
Q ss_pred HhcCCCHHHHHHH--HHHHhccccc-chhhhcccCCc-chhcccc---------------------------cccchhhh
Q 006034 545 KGFGVMSDDVTFL--RQLVRNSMEI-QAQEVLSQKDD-QEFDIMK---------------------------PLQVRVAD 593 (663)
Q Consensus 545 ~~~~~~~~~~~~~--~~~~~~~~~~-~~~e~~~~~~~-~~~~~~~---------------------------~~~~~~~~ 593 (663)
. |..-.++ +-|-.++.|- +-.|-+.+.-. ..+.-++ +.++..-.
T Consensus 439 c-----pg~st~itll~htsrg~egq~s~e~whk~yg~~sgne~y~i~~~dskff~ey~gksfs~~sfhahk~ygi~li~ 513 (1087)
T KOG3193|consen 439 C-----PGISTFITLLMHTSRGEEGQKSTEPWHKVYGFHSGNEMYQIKVQDSKFFCEYVGKSFSSTSFHAHKEYGIGLIA 513 (1087)
T ss_pred C-----CCHHHHHHHHhhhccccccCCCCchHHHHhccccCCeEEEEEecccceeeeecccccchhhhhhhhhcCeEEEE
Confidence 3 4332222 2222333211 11111111000 0011111 11111111
Q ss_pred hhhccCCCCCCCc-ccccCCCCCCCCcCCCCCCceEEEeecCCCccccccCCC
Q 006034 594 IVEAEKTIPSTSN-DDKLSREDNTDTAGEDAKGVLYCELNGTNNFLDQTKGAG 645 (663)
Q Consensus 594 ~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 645 (663)
+. |-- .+.....|.++..+++.|.+-|.|.-...+.-|-.||.-
T Consensus 514 v~--------p~~~~~~~~lnpg~~hi~~~~dt~yym~lt~ee~~td~r~g~~ 558 (1087)
T KOG3193|consen 514 VS--------PDGDTSRMKLNPGSSHIIQPTDTVYYMGLTNEESLTDFRKGIR 558 (1087)
T ss_pred Ec--------CCCCcceeecCCCcccccCCCCeEEEEecccccchhhhhhhhh
Confidence 11 111 233556688899999999999999988888777666643
No 167
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.47 E-value=0.29 Score=48.26 Aligned_cols=90 Identities=19% Similarity=0.105 Sum_probs=61.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh-------------------HHHHHH----Hhc--
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVVKES----RKL-- 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~-------------------~~~~~~----~~~-- 455 (663)
.+.+|+|+|.|.+|..+++.|. ..|. +++++|.|. .+++.+ ++.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La----------~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np 89 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLA----------GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS 89 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHH----------HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC
Confidence 4568999999999999999998 6776 899999982 233322 221
Q ss_pred CCC--EEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCC
Q 006034 456 GFP--ILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFP 503 (663)
Q Consensus 456 ~~~--vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~ 503 (663)
... .+..+.++ +.+.+ -++++|.||.++++-+.-..+...+++.+.
T Consensus 90 ~v~i~~~~~~i~~-~~~~~-~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~i 137 (202)
T TIGR02356 90 DIQVTALKERVTA-ENLEL-LINNVDLVLDCTDNFATRYLINDACVALGT 137 (202)
T ss_pred CCEEEEehhcCCH-HHHHH-HHhCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 222 22233333 32322 367899998888887777777788888763
No 168
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.44 E-value=0.088 Score=59.38 Aligned_cols=90 Identities=17% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++++|+|+|+.|...++.|. ..|.+|++.|.++++.+.+++.|..++.|+- +++. ++++|.|
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~----------~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~-~~~~-----l~~~D~V 74 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALT----------RFGARPTVCDDDPDALRPHAERGVATVSTSD-AVQQ-----IADYALV 74 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHhCCCEEEcCcc-hHhH-----hhcCCEE
Confidence 3468999999999999999997 8999999999888777667777776665533 2222 3567877
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
|...+-+..|- ....+|+.+ ++|+.+
T Consensus 75 V~SpGi~~~~p-~~~~a~~~g--i~v~~~ 100 (488)
T PRK03369 75 VTSPGFRPTAP-VLAAAAAAG--VPIWGD 100 (488)
T ss_pred EECCCCCCCCH-HHHHHHHCC--CcEeeH
Confidence 77665544443 355566653 445543
No 169
>PRK07680 late competence protein ComER; Validated
Probab=94.40 E-value=0.36 Score=49.99 Aligned_cols=98 Identities=13% Similarity=0.211 Sum_probs=61.2
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhcCCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
+|.|+|+|++|..+++.|. +.| .++.+.|+++++.+.+.+. +..+ ..+..+.+ +++
T Consensus 2 ~I~iIG~G~mG~ala~~L~----------~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~---~~~~~~~~-----~~a 63 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFL----------ESGAVKPSQLTITNRTPAKAYHIKERYPGIHV---AKTIEEVI-----SQS 63 (273)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcceEEEECCCHHHHHHHHHHcCCeEE---ECCHHHHH-----HhC
Confidence 4889999999999999997 445 4799999999998877653 2222 12233333 468
Q ss_pred cEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHH
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKK 522 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~ 522 (663)
|.+++++.++. ...++...+. +.++ +++..+.+....+.+++
T Consensus 64 DiVilav~p~~-~~~vl~~l~~~l~~~-~~iis~~ag~~~~~L~~ 106 (273)
T PRK07680 64 DLIFICVKPLD-IYPLLQKLAPHLTDE-HCLVSITSPISVEQLET 106 (273)
T ss_pred CEEEEecCHHH-HHHHHHHHHhhcCCC-CEEEEECCCCCHHHHHH
Confidence 98988887543 3333333333 3334 45554444334555544
No 170
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.37 E-value=0.17 Score=53.68 Aligned_cols=69 Identities=25% Similarity=0.318 Sum_probs=49.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++|-|+|+|++|+.+++.|. +.|++|++.+++.++ .+.+.+.|..+. +.++. +++||.|
T Consensus 17 gktIgIIG~GsmG~AlA~~L~----------~sG~~Vvv~~r~~~~s~~~A~~~G~~~~----s~~ea-----a~~ADVV 77 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLR----------DSGVDVVVGLREGSKSWKKAEADGFEVL----TVAEA-----AKWADVI 77 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHH----------HCCCEEEEEECCchhhHHHHHHCCCeeC----CHHHH-----HhcCCEE
Confidence 457999999999999999998 789999988776544 344445565431 22223 4578999
Q ss_pred EEEcCCHHH
Q 006034 482 MIMYTDKKR 490 (663)
Q Consensus 482 v~~~~dd~~ 490 (663)
+++++++..
T Consensus 78 vLaVPd~~~ 86 (330)
T PRK05479 78 MILLPDEVQ 86 (330)
T ss_pred EEcCCHHHH
Confidence 999997644
No 171
>PRK08219 short chain dehydrogenase; Provisional
Probab=94.36 E-value=0.13 Score=51.02 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=56.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhc--CCCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA--GITSP 478 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a--~i~~a 478 (663)
++++|.|. |.+|+.+++.|. ++ ++|++++++++..+.+.+ .+..++.+|.+|++.++++ .+++.
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~----------~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 72 (227)
T PRK08219 4 PTALITGASRGIGAAIARELA----------PT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRL 72 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHH----------hh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCC
Confidence 46888875 889999999997 55 999999999887666553 3578899999999888763 23467
Q ss_pred cEEEEEcC
Q 006034 479 KAVMIMYT 486 (663)
Q Consensus 479 ~~vv~~~~ 486 (663)
|.+|-+.+
T Consensus 73 d~vi~~ag 80 (227)
T PRK08219 73 DVLVHNAG 80 (227)
T ss_pred CEEEECCC
Confidence 88776543
No 172
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.36 E-value=0.096 Score=56.29 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=56.1
Q ss_pred CCCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhcC
Q 006034 401 EGSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 401 ~~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a~ 474 (663)
+...+++|.|. |-+|+.+++.|. +.|++|++++++++..+...+ .+..++.+|.+|++.++++
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~- 76 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLL----------QRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA- 76 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH-
Confidence 35567999995 899999999998 789999999988776544332 2466889999999888765
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
+++.|.||-+.
T Consensus 77 ~~~~d~Vih~A 87 (353)
T PLN02896 77 VKGCDGVFHVA 87 (353)
T ss_pred HcCCCEEEECC
Confidence 34567666544
No 173
>PRK08655 prephenate dehydrogenase; Provisional
Probab=94.36 E-value=0.27 Score=54.52 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=59.6
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-hcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
++.|+| .|.+|..+++.|. +.|++|.+.|+|++..+... +.+..+ .++.+ ..++++|.|+
T Consensus 2 kI~IIGG~G~mG~slA~~L~----------~~G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~----e~~~~aDvVI 63 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLK----------EKGFEVIVTGRDPKKGKEVAKELGVEY----ANDNI----DAAKDADIVI 63 (437)
T ss_pred EEEEEecCCHHHHHHHHHHH----------HCCCEEEEEECChHHHHHHHHHcCCee----ccCHH----HHhccCCEEE
Confidence 488997 7999999999997 78899999999998865444 344321 12221 1256789999
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
++++.+...-.+...+..+.++ .++.-+.+
T Consensus 64 lavp~~~~~~vl~~l~~~l~~~-~iViDvsS 93 (437)
T PRK08655 64 ISVPINVTEDVIKEVAPHVKEG-SLLMDVTS 93 (437)
T ss_pred EecCHHHHHHHHHHHHhhCCCC-CEEEEccc
Confidence 9999865543333334444555 45554444
No 174
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.35 E-value=0.022 Score=53.84 Aligned_cols=71 Identities=14% Similarity=0.278 Sum_probs=50.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCE-----------EEecCCCHHHHHhc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-----------LYGDASRPAVLLSA 473 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~v-----------i~GD~~~~~~L~~a 473 (663)
+|.|+|.|++|..+|..|. ++|++|.+..+|++.++.+.+.+.+. ++- -+|.+ .
T Consensus 1 KI~ViGaG~~G~AlA~~la----------~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~----~ 65 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLA----------DNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLE----E 65 (157)
T ss_dssp EEEEESSSHHHHHHHHHHH----------HCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHH----H
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHH----H
Confidence 3789999999999999998 78999999999999999888633210 111 12321 1
Q ss_pred CCCCCcEEEEEcCCHHH
Q 006034 474 GITSPKAVMIMYTDKKR 490 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~ 490 (663)
-+++||.++++++....
T Consensus 66 a~~~ad~IiiavPs~~~ 82 (157)
T PF01210_consen 66 ALEDADIIIIAVPSQAH 82 (157)
T ss_dssp HHTT-SEEEE-S-GGGH
T ss_pred HhCcccEEEecccHHHH
Confidence 24688999999888644
No 175
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.33 E-value=0.13 Score=51.85 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeC----------ChHHHHHHHhc-CCCEEE--ec-CCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDL----------NPSVVKESRKL-GFPILY--GD-ASR 466 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~----------d~~~~~~~~~~-~~~vi~--GD-~~~ 466 (663)
...+++|.|+|++|+.+++.|. +.|.+|+ +.|. |.+.+....+. +...-+ +. ..+
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~----------~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~ 99 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLH----------EAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITN 99 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCC
Confidence 3468999999999999999997 7799999 7788 77777666542 211111 11 122
Q ss_pred HHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE-ecC---hhhHHHHHHcCCCeEEcCch
Q 006034 467 PAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR-AQD---MMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~-~~~---~~~~~~l~~~Gad~vi~p~~ 533 (663)
++++. .++|.++=++..+..|-. .+.++. +++|+. +|+ ++..+.|++-|+ ++.|..
T Consensus 100 ~~i~~----~~~Dvlip~a~~~~i~~~---~~~~l~--a~~I~egAN~~~t~~a~~~L~~rGi--~~~PD~ 159 (227)
T cd01076 100 EELLE----LDCDILIPAALENQITAD---NADRIK--AKIIVEAANGPTTPEADEILHERGV--LVVPDI 159 (227)
T ss_pred cccee----ecccEEEecCccCccCHH---HHhhce--eeEEEeCCCCCCCHHHHHHHHHCCC--EEEChH
Confidence 33332 278988777766544444 455554 466664 333 567888999887 455763
No 176
>PRK05884 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.1 Score=52.21 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=54.4
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcC--C-CCCc
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAG--I-TSPK 479 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~--i-~~a~ 479 (663)
+++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ .+..++.+|.+|++.++++- + ++.|
T Consensus 2 ~vlItGas~giG~~ia~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id 71 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFR----------NDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLD 71 (223)
T ss_pred eEEEEeCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCc
Confidence 4778876 899999999997 789999999999998876654 35778999999998776541 1 2467
Q ss_pred EEEEE
Q 006034 480 AVMIM 484 (663)
Q Consensus 480 ~vv~~ 484 (663)
.+|-.
T Consensus 72 ~lv~~ 76 (223)
T PRK05884 72 TIVNV 76 (223)
T ss_pred EEEEC
Confidence 66643
No 177
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=94.24 E-value=0.23 Score=45.89 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=57.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh--------------HH-----HH----HHHhc--CC-
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP--------------SV-----VK----ESRKL--GF- 457 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~--------------~~-----~~----~~~~~--~~- 457 (663)
+++|+|.|.+|..+++.|. ..|. +++++|.|. +. ++ .+++. +.
T Consensus 1 ~VliiG~GglGs~ia~~L~----------~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~ 70 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLA----------RSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVN 70 (143)
T ss_pred CEEEECCCHHHHHHHHHHH----------HCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcE
Confidence 5899999999999999998 6776 699999882 21 22 22221 22
Q ss_pred -CEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 458 -PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 458 -~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
..+..+.+++.. ..-++++|.+|.++++.+....+...+|+.+
T Consensus 71 i~~~~~~~~~~~~--~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~ 114 (143)
T cd01483 71 VTAVPEGISEDNL--DDFLDGVDLVIDAIDNIAVRRALNRACKELG 114 (143)
T ss_pred EEEEeeecChhhH--HHHhcCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 223444444332 2335689988888888777777778888875
No 178
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=94.23 E-value=0.64 Score=43.69 Aligned_cols=56 Identities=20% Similarity=0.444 Sum_probs=43.1
Q ss_pred CchhHHHHHHHHHHhccCCC------cCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhh
Q 006034 7 CRSQILGFFFAGIVLNQLGI------IRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAK 62 (663)
Q Consensus 7 ~lP~ivg~ilaGillGp~gl------v~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~ 62 (663)
++-...|-+++|+++|.++- --+......+.++|+.++++.+|++--.+.+...++
T Consensus 20 ~LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~ 81 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKD 81 (154)
T ss_pred EecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 33347799999999998652 123456788999999999999999999886665544
No 179
>PLN02712 arogenate dehydrogenase
Probab=94.13 E-value=0.22 Score=58.09 Aligned_cols=97 Identities=20% Similarity=0.284 Sum_probs=62.2
Q ss_pred ccCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 399 NYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 399 ~~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
+...+.++.|+|+|++|+.+++.|. +.|++|+++|++.+. +.+.+.|... .+|.+-+ -.+++
T Consensus 48 ~~~~~~kIgIIG~G~mG~slA~~L~----------~~G~~V~~~dr~~~~-~~A~~~Gv~~----~~d~~e~---~~~~a 109 (667)
T PLN02712 48 DNTTQLKIAIIGFGNYGQFLAKTLI----------SQGHTVLAHSRSDHS-LAARSLGVSF----FLDPHDL---CERHP 109 (667)
T ss_pred ccCCCCEEEEEccCHHHHHHHHHHH----------HCCCEEEEEeCCHHH-HHHHHcCCEE----eCCHHHH---hhcCC
Confidence 3445568999999999999999997 678999999998654 4445555432 2333322 12468
Q ss_pred cEEEEEcCCHHHHHHHHHHHH--HhCCCCcEEEEecChh
Q 006034 479 KAVMIMYTDKKRTIEAVQRLR--LAFPAIPIYARAQDMM 515 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r--~~~~~~~iia~~~~~~ 515 (663)
|.|++++..+. ...++.... .+.++ .+++-+.+-+
T Consensus 110 DvViLavP~~~-~~~vl~~l~~~~l~~g-~iVvDv~SvK 146 (667)
T PLN02712 110 DVILLCTSIIS-TENVLKSLPLQRLKRN-TLFVDVLSVK 146 (667)
T ss_pred CEEEEcCCHHH-HHHHHHhhhhhcCCCC-eEEEECCCCc
Confidence 99999999653 333333222 23444 4666555544
No 180
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=94.12 E-value=9.2 Score=40.47 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHHHHhhhCCCCCcchhhHHHHhhccccccccccCHH
Q 006034 33 VKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSID 112 (663)
Q Consensus 33 l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~ 112 (663)
.+....+++..++|..|+.++.+++++..|+.-.... ....++++.-.+ |..+ ..+++. ...
T Consensus 29 ~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~-~~~~~fvl~Pll--------~~~~-~~l~~~--------~~~ 90 (313)
T PF13593_consen 29 PEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLF-VQAFNFVLFPLL--------GFGL-SRLFPA--------FLP 90 (313)
T ss_pred hhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHH-HHHHHHHHHHHH--------HHHH-HHHhhc--------cCC
Confidence 3477888899999999999999999987665433322 233444443332 1111 222221 112
Q ss_pred HHHHHHHHHHhhhHHHHHH-H-HhhcCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 006034 113 EAVVIGAALSLSSSAFVLQ-L-LAEKGELPTRFGSATLGILLLQDIAVVPLLVI 164 (663)
Q Consensus 113 ~alllg~~ls~TS~~vv~~-i-l~~~~~~~~~~g~~~l~~~~~~Di~~i~~l~i 164 (663)
..+..|..+...-|..+.. + +.+ ..+.+. ..++-.+.+..+.++++.-+
T Consensus 91 ~~l~~Gl~~~~~lPtTv~S~v~~T~--~AgGN~-a~Al~~~~~snllgv~ltP~ 141 (313)
T PF13593_consen 91 PELALGLLILACLPTTVSSSVVLTR--LAGGNV-ALALFNAVLSNLLGVFLTPL 141 (313)
T ss_pred HHHHHHHHHHhhCCchhhHHHHHHH--HcCCCH-HHHHHHHHHHhhhhHhHHHH
Confidence 3466665555444433222 1 111 122232 34556667777777766533
No 181
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.10 E-value=0.085 Score=50.95 Aligned_cols=84 Identities=20% Similarity=0.335 Sum_probs=54.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+++.|+ ..|.+|.+.|+.++..+...+.+... + +-++.++ ++|.+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~~~~~~~~~~~~---~-~l~ell~-----~aDiv 95 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLK----------AFGMRVIGYDRSPKPEEGADEFGVEY---V-SLDELLA-----QADIV 95 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHH----------HTT-EEEEEESSCHHHHHHHHTTEEE---S-SHHHHHH-----H-SEE
T ss_pred CCCEEEEEEEcCCcCeEeeeee----------cCCceeEEecccCChhhhccccccee---e-ehhhhcc-----hhhhh
Confidence 4568999999999999999998 89999999999998766344333311 1 2234443 58888
Q ss_pred EEEcCCHH--HHHHHHHHHHHhCCC
Q 006034 482 MIMYTDKK--RTIEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~--~n~~~~~~~r~~~~~ 504 (663)
++..+-.+ .++.-....+++.++
T Consensus 96 ~~~~plt~~T~~li~~~~l~~mk~g 120 (178)
T PF02826_consen 96 SLHLPLTPETRGLINAEFLAKMKPG 120 (178)
T ss_dssp EE-SSSSTTTTTSBSHHHHHTSTTT
T ss_pred hhhhccccccceeeeeeeeeccccc
Confidence 88877432 344444455555544
No 182
>PRK08264 short chain dehydrogenase; Validated
Probab=94.06 E-value=0.14 Score=51.35 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=55.6
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc--CCCCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA--GITSP 478 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a--~i~~a 478 (663)
.++++|.|. |.+|+.+++.|. +.|+ +|+++++++++.+. ...+..++.+|.+|++.++++ ...+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~----------~~G~~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~i 74 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLL----------ARGAAKVYAAARDPESVTD-LGPRVVPLQLDVTDPASVAAAAEAASDV 74 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCcccEEEEecChhhhhh-cCCceEEEEecCCCHHHHHHHHHhcCCC
Confidence 357888885 999999999998 7888 99999999887654 334577889999998877653 23456
Q ss_pred cEEEEEcC
Q 006034 479 KAVMIMYT 486 (663)
Q Consensus 479 ~~vv~~~~ 486 (663)
|.+|-..+
T Consensus 75 d~vi~~ag 82 (238)
T PRK08264 75 TILVNNAG 82 (238)
T ss_pred CEEEECCC
Confidence 77655543
No 183
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=94.05 E-value=0.44 Score=47.39 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=57.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCCh------------------HHHHHH----Hh--cC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP------------------SVVKES----RK--LG 456 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~------------------~~~~~~----~~--~~ 456 (663)
.+.+|+|+|.|-+|..+++.|. ..|.. ++++|.|. .+++.+ ++ ..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~ 96 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALA----------RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPF 96 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCC
Confidence 3568999999999999999997 56765 99999982 122222 22 12
Q ss_pred --CCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q 006034 457 --FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLA 501 (663)
Q Consensus 457 --~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~ 501 (663)
...+..+.+++ .+. .-++++|.||.++++-+.-..+...+++.
T Consensus 97 v~v~~~~~~i~~~-~~~-~~~~~~DvVI~a~D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 97 VEIEAHNEKIDED-NIE-ELFKDCDIVVEAFDNAETKAMLVETVLEH 141 (212)
T ss_pred CEEEEEeeecCHH-HHH-HHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 22333444433 222 23578998888887766655566667776
No 184
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.99 E-value=0.033 Score=51.31 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=51.6
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEc
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY 485 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~ 485 (663)
.+|+|.|..++.+++... ..|++|+++|.++++.. ...-+. ....++..++..++..++| ++|
T Consensus 1 L~I~GaG~va~al~~la~----------~lg~~v~v~d~r~e~~~-----~~~~~~-~~~~~~~~~~~~~~~~t~V-v~t 63 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAA----------LLGFRVTVVDPRPERFP-----EADEVI-CIPPDDILEDLEIDPNTAV-VMT 63 (136)
T ss_dssp EEEES-STCHHHHHHHHH----------HCTEEEEEEES-CCC-T-----TSSEEE-CSHHHHHHHHC-S-TT-EE-E--
T ss_pred CEEEeCcHHHHHHHHHHH----------hCCCEEEEEcCCccccC-----CCCccE-ecChHHHHhccCCCCCeEE-EEc
Confidence 479999999999999997 78999999999988654 222222 2223555677788888876 566
Q ss_pred CCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 006034 486 TDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 486 ~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
.+-+....+...+-+.. .+-+...-+...
T Consensus 64 h~h~~D~~~L~~~l~~~--~~YiG~lGS~~k 92 (136)
T PF13478_consen 64 HDHELDAEALEAALASP--ARYIGLLGSRRK 92 (136)
T ss_dssp S-CCCHHHHHHHHTTSS---SEEEESS-HHH
T ss_pred CCchhHHHHHHHHHcCC--CCEEEeecCchH
Confidence 65333334444444443 344554444433
No 185
>PRK07454 short chain dehydrogenase; Provisional
Probab=93.99 E-value=0.13 Score=51.86 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=55.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+ ....++.+|.+|++.++++
T Consensus 7 k~vlItG~sg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (241)
T PRK07454 7 PRALITGASSGIGKATALAFA----------KAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAE 76 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHH
Confidence 46888886 899999999997 789999999999887655543 2456789999999866443
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|-+.+
T Consensus 77 ~~~~~~~id~lv~~ag 92 (241)
T PRK07454 77 LLEQFGCPDVLINNAG 92 (241)
T ss_pred HHHHcCCCCEEEECCC
Confidence 2245787776553
No 186
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=93.97 E-value=0.44 Score=45.87 Aligned_cols=110 Identities=19% Similarity=0.235 Sum_probs=71.7
Q ss_pred CCcEEEEcCC--cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGFG--QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~g--~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a 473 (663)
.+++.=+|+| .++-..+ +. .+..+|+.||+|+++.+..++ ++..++.||+ |+.|.
T Consensus 35 g~~l~DIGaGtGsi~iE~a--~~----------~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A--p~~L~-- 98 (187)
T COG2242 35 GDRLWDIGAGTGSITIEWA--LA----------GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA--PEALP-- 98 (187)
T ss_pred CCEEEEeCCCccHHHHHHH--Hh----------CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc--hHhhc--
Confidence 3455555554 5555555 43 688899999999999877653 4567888877 56776
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChhhHH----HHHHcCCCeEE
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMHLL----DLKKAGATDAI 529 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~~~----~l~~~Gad~vi 529 (663)
++.+.|++++.-+...+.++ =.....+.|.-++|+.+.+.++.. .+++.|...++
T Consensus 99 ~~~~~daiFIGGg~~i~~il-e~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ei~ 157 (187)
T COG2242 99 DLPSPDAIFIGGGGNIEEIL-EAAWERLKPGGRLVANAITLETLAKALEALEQLGGREIV 157 (187)
T ss_pred CCCCCCEEEECCCCCHHHHH-HHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCceEE
Confidence 55689999888774433332 222334456668999888876654 44666664333
No 187
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.96 E-value=0.5 Score=49.41 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=35.8
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 453 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~ 453 (663)
++|.|+|.|.+|..++..|. ..|++|++.|.|++..+...
T Consensus 5 ~kI~vIGaG~mG~~iA~~la----------~~G~~V~l~d~~~~~~~~~~ 44 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCA----------LAGYDVLLNDVSADRLEAGL 44 (292)
T ss_pred CEEEEECCcHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHH
Confidence 56999999999999999997 78999999999999877643
No 188
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.94 E-value=0.13 Score=53.02 Aligned_cols=73 Identities=19% Similarity=0.203 Sum_probs=58.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc------CCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i~ 476 (663)
+.++|.|. |.+|+.+++.|. +.|++|++.+++++..+.+.+.+...+.+|.+|++.++++ ...
T Consensus 2 k~vlItGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 71 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFK----------AAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHG 71 (274)
T ss_pred CEEEEecCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 36788886 889999999997 7899999999999988877777788899999998877542 224
Q ss_pred CCcEEEEEcC
Q 006034 477 SPKAVMIMYT 486 (663)
Q Consensus 477 ~a~~vv~~~~ 486 (663)
+.|.+|-..+
T Consensus 72 ~id~vi~~ag 81 (274)
T PRK05693 72 GLDVLINNAG 81 (274)
T ss_pred CCCEEEECCC
Confidence 6787776654
No 189
>PRK06101 short chain dehydrogenase; Provisional
Probab=93.94 E-value=0.13 Score=51.87 Aligned_cols=59 Identities=27% Similarity=0.298 Sum_probs=49.2
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhc
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSA 473 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a 473 (663)
.++|.| .|.+|+.+++.|. ++|++|+++++|+++.+.+.+. ...++.+|.+|++-++++
T Consensus 3 ~vlItGas~giG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYA----------KQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHH----------hCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHH
Confidence 477887 4999999999997 7899999999999888777653 467889999999977654
No 190
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.94 E-value=0.48 Score=49.25 Aligned_cols=86 Identities=9% Similarity=0.143 Sum_probs=54.7
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCCh-HHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNP-SVVKESRK-LGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~-~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
++.++|.|++|..+++.|. +.| +++.+.++++ ++.+.+.+ .+.... . +..+. ++++
T Consensus 5 kI~~IG~G~mG~aia~~l~----------~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~-~--~~~e~-----~~~a 66 (279)
T PRK07679 5 NISFLGAGSIAEAIIGGLL----------HANVVKGEQITVSNRSNETRLQELHQKYGVKGT-H--NKKEL-----LTDA 66 (279)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcceEEEECCCCHHHHHHHHHhcCceEe-C--CHHHH-----HhcC
Confidence 6999999999999999997 444 7889999866 46666654 354322 1 12222 3578
Q ss_pred cEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEE
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYAR 510 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~ 510 (663)
|.|++++.++...- .+...+. ..++ +++.-
T Consensus 67 DvVilav~p~~~~~-vl~~l~~~~~~~-~liIs 97 (279)
T PRK07679 67 NILFLAMKPKDVAE-ALIPFKEYIHNN-QLIIS 97 (279)
T ss_pred CEEEEEeCHHHHHH-HHHHHHhhcCCC-CEEEE
Confidence 99999998764322 2233333 3344 44444
No 191
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.89 E-value=0.22 Score=53.41 Aligned_cols=101 Identities=14% Similarity=0.194 Sum_probs=63.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEE-Ee-cCC------CHHHHHhcC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPIL-YG-DAS------RPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi-~G-D~~------~~~~L~~a~ 474 (663)
..+|.|+|.|.+|..++..|. +.| ++++..+|++.++.+.+.+.+.- .+ +.. -.+-+.+ .
T Consensus 7 ~mkI~IiGaGa~G~alA~~La----------~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~-a 74 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICA----------RRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE-A 74 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHH----------HCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH-H
Confidence 347999999999999999997 566 68888899999988886542211 11 100 0011222 2
Q ss_pred CCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhh
Q 006034 475 ITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMH 516 (663)
Q Consensus 475 i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~ 516 (663)
++++|.+++++..... -.++..++. +.++..++..++--++
T Consensus 75 ~~~aDlVilavps~~~-~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 75 ANCADVVVMGVPSHGF-RGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred HhcCCEEEEEeCHHHH-HHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 5788999999986432 233334443 4555557776664443
No 192
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.89 E-value=0.14 Score=57.58 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=59.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-H----HHHHHhcCCCEEEecCCCHHHHHhcCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-V----VKESRKLGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~----~~~~~~~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
.++++|+|.|..|..+|+.|. +.|++|+++|.+++ . .+.+++.|..+..|+..+ ...+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~----------~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-------~~~~ 78 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALL----------ELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-------LPED 78 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-------ccCC
Confidence 458999999999999999997 78999999996542 2 344666788888876543 2356
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
+|.||+.++-...| .....+|+.+
T Consensus 79 ~D~Vv~s~Gi~~~~-~~~~~a~~~g 102 (480)
T PRK01438 79 TDLVVTSPGWRPDA-PLLAAAADAG 102 (480)
T ss_pred CCEEEECCCcCCCC-HHHHHHHHCC
Confidence 89888777654333 3445555554
No 193
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=93.86 E-value=2.6 Score=46.91 Aligned_cols=95 Identities=25% Similarity=0.339 Sum_probs=55.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEE-EeCChHHHHHHHhcCCCEEEecCCC-HHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FDLNPSVVKESRKLGFPILYGDASR-PAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvv-id~d~~~~~~~~~~~~~vi~GD~~~-~~~L~~a~i~~a~ 479 (663)
..++++|+|.|+-|+.+++.+.+ ..+.+++++. +|.|++... .-.+.+++ |+..| ++..++ .+.|
T Consensus 124 ~~~rvLIvGag~~a~~l~~~L~~-------~~~~g~~vvG~idd~~~~~~--~i~g~pVl-g~~~~l~~~i~~---~~id 190 (445)
T TIGR03025 124 NLRRVLIVGTGEAARELAAALSR-------NPDLGYRVVGFVDDRPSDRV--EVAGLPVL-GKLDDLVELVRA---HRVD 190 (445)
T ss_pred CCCcEEEEECCHHHHHHHHHHhh-------CccCCeEEEEEEeCCccccc--ccCCCccc-CCHHHHHHHHHh---CCCC
Confidence 34679999999999999999962 0123555554 576655421 12355544 44332 223333 5677
Q ss_pred EEEEEcCCHH--HHHHHHHHHHHhCCCCcEEE
Q 006034 480 AVMIMYTDKK--RTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 480 ~vv~~~~dd~--~n~~~~~~~r~~~~~~~iia 509 (663)
.|+++.++.+ .-..+...+++.+.+++++-
T Consensus 191 ~ViIa~p~~~~~~~~~ll~~~~~~gv~V~~vP 222 (445)
T TIGR03025 191 EVIIALPLSEEARILELLLQLRDLGVDVRLVP 222 (445)
T ss_pred EEEEecCcccHHHHHHHHHHHHhcCCEEEEeC
Confidence 7877776643 22345667777765544443
No 194
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.85 E-value=0.46 Score=46.79 Aligned_cols=96 Identities=15% Similarity=0.191 Sum_probs=57.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCC---hHHHH-------------------HHHh--c-
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN---PSVVK-------------------ESRK--L- 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d---~~~~~-------------------~~~~--~- 455 (663)
.+.+|.|+|.|-+|..+++.|. ..|. +++++|.| ++... .+.+ .
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~ 89 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLA----------RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPY 89 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHH----------HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCC
Confidence 4568999999999999999998 6788 59999999 33211 1111 1
Q ss_pred -CCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 456 -GFPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 456 -~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
....+..+.++++ +.+ -++++|.||-++++.+.-..+...+.+..+...+++
T Consensus 90 ~~i~~~~~~i~~~~-~~~-~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 90 TEIEAYDEKITEEN-IDK-FFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred CEEEEeeeeCCHhH-HHH-HhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 1223344444333 322 246789888787665544443433333333334454
No 195
>PLN02650 dihydroflavonol-4-reductase
Probab=93.84 E-value=0.096 Score=56.23 Aligned_cols=73 Identities=22% Similarity=0.245 Sum_probs=55.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~ 472 (663)
.+++++|.|. |-+|+.+++.|. +.|++|++++++++..+...+ ..+.++.||.+|++.+++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~ 73 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLL----------ERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDD 73 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHH----------HCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHH
Confidence 4567999986 999999999997 789999999888765543322 135678999999988876
Q ss_pred cCCCCCcEEEEEc
Q 006034 473 AGITSPKAVMIMY 485 (663)
Q Consensus 473 a~i~~a~~vv~~~ 485 (663)
+ ++++|.|+-+.
T Consensus 74 ~-~~~~d~ViH~A 85 (351)
T PLN02650 74 A-IRGCTGVFHVA 85 (351)
T ss_pred H-HhCCCEEEEeC
Confidence 4 44577776543
No 196
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.78 E-value=0.15 Score=51.35 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=57.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhc--CCCCCc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA--GITSPK 479 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a--~i~~a~ 479 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+ .+..++.+|.+|++.++++ .....|
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d 79 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALA----------QRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFD 79 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCC
Confidence 57899997 799999999997 789999999999988776655 3577889999998876553 234568
Q ss_pred EEEEEc
Q 006034 480 AVMIMY 485 (663)
Q Consensus 480 ~vv~~~ 485 (663)
.+|-..
T Consensus 80 ~vi~~a 85 (245)
T PRK07060 80 GLVNCA 85 (245)
T ss_pred EEEECC
Confidence 776554
No 197
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.77 E-value=0.52 Score=48.14 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=58.7
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.++|.|. |.+|+.++++|. +.+++|++.-+++++..... .+..+..+|..+++.+..+ .+..+.++.
T Consensus 2 ~ilV~GatG~~G~~~~~~L~----------~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a-~~G~~~~~~ 69 (275)
T COG0702 2 KILVTGATGFVGGAVVRELL----------ARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAG-AKGVDGVLL 69 (275)
T ss_pred eEEEEecccchHHHHHHHHH----------hCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHH-hccccEEEE
Confidence 4677765 999999999998 67999999999999999888 8899999999999999875 455555555
Q ss_pred EcC
Q 006034 484 MYT 486 (663)
Q Consensus 484 ~~~ 486 (663)
+..
T Consensus 70 i~~ 72 (275)
T COG0702 70 ISG 72 (275)
T ss_pred Eec
Confidence 544
No 198
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.74 E-value=0.17 Score=56.56 Aligned_cols=90 Identities=19% Similarity=0.242 Sum_probs=63.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-----HHHHHHhcCCCEEEecCCCHHHHHhcCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESRKLGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-----~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
.+++.|+|+|..|+.+++.|. +.|++|.+.|.++. ..+.+.+.|..+..|+.. ++-+ .+
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~----------~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~-~~~~-----~~ 77 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLV----------KLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY-LDKL-----DG 77 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHH----------HCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC-hHHh-----cc
Confidence 357999999999999999997 89999999997753 224566778888877554 2222 56
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
+|.||...+=+. +-.....||+.+ ++++.+.
T Consensus 78 ~dlVV~Spgi~~-~~p~~~~a~~~~--i~i~s~~ 108 (458)
T PRK01710 78 FDVIFKTPSMRI-DSPELVKAKEEG--AYITSEM 108 (458)
T ss_pred CCEEEECCCCCC-CchHHHHHHHcC--CcEEech
Confidence 787766543333 334566777765 5676544
No 199
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=93.71 E-value=0.22 Score=54.02 Aligned_cols=73 Identities=15% Similarity=0.086 Sum_probs=53.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.+|+|.|. |-+|+.+++.|. +.|++|+++++.+............++.||.+|.+.+.++ ++++|.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~----------~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~D~ 88 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLK----------AEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKV-TKGVDH 88 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHH----------hCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHH-HhCCCE
Confidence 4568999998 999999999997 7899999999764321100112356788999999887764 246787
Q ss_pred EEEEc
Q 006034 481 VMIMY 485 (663)
Q Consensus 481 vv~~~ 485 (663)
|+-+.
T Consensus 89 Vih~A 93 (370)
T PLN02695 89 VFNLA 93 (370)
T ss_pred EEEcc
Confidence 66554
No 200
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.70 E-value=0.17 Score=55.79 Aligned_cols=40 Identities=28% Similarity=0.539 Sum_probs=36.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK 454 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~ 454 (663)
+|.|+|.|.+|..++..|. +.|++|+++|.|+++++.+.+
T Consensus 2 kI~vIGlG~~G~~lA~~La----------~~G~~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLA----------DLGHEVTGVDIDQEKVDKLNK 41 (411)
T ss_pred EEEEECCCchhHHHHHHHH----------hcCCeEEEEECCHHHHHHhhc
Confidence 4889999999999999997 789999999999999988775
No 201
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.58 E-value=0.41 Score=50.45 Aligned_cols=136 Identities=18% Similarity=0.230 Sum_probs=81.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHH-HHHh---c----CC-CEEEecCCCHHHHHhc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVK-ESRK---L----GF-PILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~-~~~~---~----~~-~vi~GD~~~~~~L~~a 473 (663)
.++.|+|.|.+|..+|..+. ..|+ +|+++|.+++..+ ...+ . .. .-+... +| +++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la----------~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t-~d---~~~- 66 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLA----------EKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGT-NN---YAD- 66 (305)
T ss_pred CEEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEec-CC---HHH-
Confidence 36999999999999999987 5554 8999999877543 2111 1 11 122211 22 222
Q ss_pred CCCCCcEEEEEcCC----H-------HHHHHHHH----HHHHhCCCCcEEEEecChhhHH---HHHHcCC--CeEEcCc-
Q 006034 474 GITSPKAVMIMYTD----K-------KRTIEAVQ----RLRLAFPAIPIYARAQDMMHLL---DLKKAGA--TDAILEN- 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~d----d-------~~n~~~~~----~~r~~~~~~~iia~~~~~~~~~---~l~~~Ga--d~vi~p~- 532 (663)
+++||.+|++.+. + ..|..+.. .+++.+|+. ++..+.||.+.- ..+..|. .+|+---
T Consensus 67 -~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~-~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~ 144 (305)
T TIGR01763 67 -TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNP-IIVVVSNPLDAMTYVAWQKSGFPKERVIGQAG 144 (305)
T ss_pred -hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHHHHHHHHHHHCcCHHHEEEecc
Confidence 5789999988872 1 24665544 355667774 455555554332 2344344 3466553
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDVTF 556 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~~~ 556 (663)
..-+.++-+.+-+.+++++..+..
T Consensus 145 ~lds~R~~~~la~~l~v~~~~v~~ 168 (305)
T TIGR01763 145 VLDSARFRTFIAMELGVSVQDVTA 168 (305)
T ss_pred chHHHHHHHHHHHHhCcCHHHeee
Confidence 444445666777777888866543
No 202
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.57 E-value=0.74 Score=47.80 Aligned_cols=102 Identities=11% Similarity=0.081 Sum_probs=58.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCCh-HHHHHHHhcCCCE-EEecCCCHHHHHhcCCCCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNP-SVVKESRKLGFPI-LYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~-~~~~~~~~~~~~v-i~GD~~~~~~L~~a~i~~a 478 (663)
++.|+|+|++|..+++.|. +.+ +++.++++++ ++.+.+.+....+ +.. +..+. ++++
T Consensus 3 ~I~iIG~G~mG~ala~~L~----------~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~--~~~e~-----~~~a 65 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLL----------ETEVATPEEIILYSSSKNEHFNQLYDKYPTVELAD--NEAEI-----FTKC 65 (277)
T ss_pred EEEEECccHHHHHHHHHHH----------HCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeC--CHHHH-----HhhC
Confidence 5889999999999999997 444 6899999865 4455544321111 111 11222 3578
Q ss_pred cEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEecChhhHHHHHHcC
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARAQDMMHLLDLKKAG 524 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~~~~~~~~~l~~~G 524 (663)
|.+++++..+. -..++..++. +.++..++...+--+..++-+..+
T Consensus 66 DvVilavpp~~-~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~ 111 (277)
T PRK06928 66 DHSFICVPPLA-VLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITP 111 (277)
T ss_pred CEEEEecCHHH-HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC
Confidence 99998888643 2333333433 334434555555444433333333
No 203
>PRK01581 speE spermidine synthase; Validated
Probab=93.56 E-value=0.76 Score=49.22 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=63.6
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------------cCCCEEEecCCC
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------------LGFPILYGDASR 466 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------------~~~~vi~GD~~~ 466 (663)
...++|+++|+|. |..+.+.|+ .....++++||.|++.++.+++ .+..++.||+.+
T Consensus 149 ~~PkrVLIIGgGd-G~tlrelLk---------~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~ 218 (374)
T PRK01581 149 IDPKRVLILGGGD-GLALREVLK---------YETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE 218 (374)
T ss_pred CCCCEEEEECCCH-HHHHHHHHh---------cCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH
Confidence 4557999999984 555555564 1334689999999998887663 346678888873
Q ss_pred HHHHHhcCCCCCcEEEEEcCCHHH----HH----HHHHHHHHhCCCCcEEEEecC
Q 006034 467 PAVLLSAGITSPKAVMIMYTDKKR----TI----EAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd~~----n~----~~~~~~r~~~~~~~iia~~~~ 513 (663)
.+++. -++.|.|++-..|... .+ ......+.+.|+--+++..++
T Consensus 219 --fL~~~-~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~s 270 (374)
T PRK01581 219 --FLSSP-SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNS 270 (374)
T ss_pred --HHHhc-CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 34443 2578988888765321 11 233445557777444444433
No 204
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=93.53 E-value=0.69 Score=50.41 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=78.0
Q ss_pred cEEEEcCCcchH-HHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCC-EE-EecC---------------CC
Q 006034 405 PVVIVGFGQMGQ-VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFP-IL-YGDA---------------SR 466 (663)
Q Consensus 405 ~viI~G~g~~g~-~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~-vi-~GD~---------------~~ 466 (663)
+++++|.|++|+ .+...|. +.|++|+.+|.+++.++.+.++|.. +. .|+. ++
T Consensus 2 ki~~~GaGa~gr~~~~~~l~----------~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~ 71 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLA----------DNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADE 71 (381)
T ss_pred ceEEECCchhhHHHHHHHHH----------hCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCH
Confidence 589999999999 5577776 7889999999999999999887743 22 2333 11
Q ss_pred HHHHHhcCCCCCcEEEEEcCCHH-H----HHHHHHHHHHh---CCCCcEEEEecChhhHHHHHHc-CCCeEEcCchHHHH
Q 006034 467 PAVLLSAGITSPKAVMIMYTDKK-R----TIEAVQRLRLA---FPAIPIYARAQDMMHLLDLKKA-GATDAILENAETSL 537 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd~-~----n~~~~~~~r~~---~~~~~iia~~~~~~~~~~l~~~-Gad~vi~p~~~~~~ 537 (663)
+++++ .+.++|.+..++.... . .+.-.+..|.. .+...+++-.|-..+.+.+++. +-. .+.
T Consensus 72 ~~~~~--~~~~~dlvt~~v~~~~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~~ng~~L~~~V~~~---~~~----- 141 (381)
T PRK02318 72 EAVIE--AIAEADLVTTAVGPNILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMIRGTSFLKKHVLKA---LSE----- 141 (381)
T ss_pred HHHHH--HhcCCCEEEeCCCcccchhHHHHHHHHHHHHHHcCCCCCCEEEecCChhhHHHHHHHHHHHh---CCH-----
Confidence 12222 2346675554444321 1 11122223332 3444677777778887887765 211 121
Q ss_pred HHHHHHHHhcCCCHHHHHHH
Q 006034 538 QLGSKLLKGFGVMSDDVTFL 557 (663)
Q Consensus 538 ~la~~~~~~~~~~~~~~~~~ 557 (663)
..+.-+-...+++...++++
T Consensus 142 ~~~~wi~~~~~f~~t~VDrI 161 (381)
T PRK02318 142 DEKAWLEEHVGFVDSAVDRI 161 (381)
T ss_pred HHHHHHHhcCCCCCcHHhcC
Confidence 34444445556666555554
No 205
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.52 E-value=0.21 Score=52.85 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=55.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.|. ..|.+|.+.|+.++... +.....+ .. .|++ -++++|.++
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~----------afG~~V~~~~~~~~~~~-----~~~~~~~-~~---~l~e-~l~~aDvvv 195 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQ----------TWGFPLRCWSRSRKSWP-----GVQSFAG-RE---ELSA-FLSQTRVLI 195 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCCCC-----Cceeecc-cc---cHHH-HHhcCCEEE
Confidence 457999999999999999997 78999999998765422 2222211 11 2221 246789999
Q ss_pred EEcCCHHHHHHH--HHHHHHhCCCC
Q 006034 483 IMYTDKKRTIEA--VQRLRLAFPAI 505 (663)
Q Consensus 483 ~~~~dd~~n~~~--~~~~r~~~~~~ 505 (663)
++.+.++.|..+ ....+.+.|+.
T Consensus 196 ~~lPlt~~T~~li~~~~l~~mk~ga 220 (312)
T PRK15469 196 NLLPNTPETVGIINQQLLEQLPDGA 220 (312)
T ss_pred ECCCCCHHHHHHhHHHHHhcCCCCc
Confidence 988876655443 34455565553
No 206
>PLN00106 malate dehydrogenase
Probab=93.52 E-value=0.61 Score=49.48 Aligned_cols=142 Identities=14% Similarity=0.119 Sum_probs=89.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH--HHHHhcCCCEEEecC-CCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV--KESRKLGFPILYGDA-SRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~--~~~~~~~~~vi~GD~-~~~~~L~~a~i~~a 478 (663)
..+|.|+|. |++|..++..|.. .....+++++|.++... ..+.+........+. .+++ +. ..++++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~--------~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d-~~-~~l~~a 87 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKM--------NPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQ-LG-DALKGA 87 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHh--------CCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCC-HH-HHcCCC
Confidence 458999999 9999999999861 12334799999988221 122222222222232 2222 22 357889
Q ss_pred cEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh------HHHHHH-cCC--CeEEcCchH
Q 006034 479 KAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH------LLDLKK-AGA--TDAILENAE 534 (663)
Q Consensus 479 ~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~------~~~l~~-~Ga--d~vi~p~~~ 534 (663)
|.||++.+. | ..|.. ++..+++.+|+ .++.-+.||.+ ...+.+ .|- ++++--...
T Consensus 88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~-aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~L 166 (323)
T PLN00106 88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPN-ALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTL 166 (323)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecc
Confidence 998888764 1 23444 45667778888 45555666654 222333 333 677776667
Q ss_pred HHHHHHHHHHHhcCCCHHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~~ 555 (663)
-+.++...+-+.+++++..++
T Consensus 167 Ds~Rl~~~lA~~lgv~~~~V~ 187 (323)
T PLN00106 167 DVVRANTFVAEKKGLDPADVD 187 (323)
T ss_pred hHHHHHHHHHHHhCCChhheE
Confidence 777888888888888885554
No 207
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=93.42 E-value=0.34 Score=47.58 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=64.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC-hHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d-~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.+.|+|.|++|..+++.+. +.|++|++.-++ |+..+.+.+.-...+.|- +.++ -.+.||.|+.
T Consensus 3 ~~~i~GtGniG~alA~~~a----------~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~-~~~d-----A~~~aDVVvL 66 (211)
T COG2085 3 IIAIIGTGNIGSALALRLA----------KAGHEVIIGSSRGPKALAAAAAALGPLITGG-SNED-----AAALADVVVL 66 (211)
T ss_pred EEEEeccChHHHHHHHHHH----------hCCCeEEEecCCChhHHHHHHHhhccccccC-ChHH-----HHhcCCEEEE
Confidence 5899999999999999998 899999999554 444554444333334432 1222 2467898888
Q ss_pred EcCCHHHHHHHHHHHHHhCCCCcEEEEecChhh
Q 006034 484 MYTDKKRTIEAVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
+.+= +....+....++...+ +|+.-+.++-.
T Consensus 67 AVP~-~a~~~v~~~l~~~~~~-KIvID~tnp~~ 97 (211)
T COG2085 67 AVPF-EAIPDVLAELRDALGG-KIVIDATNPIE 97 (211)
T ss_pred eccH-HHHHhHHHHHHHHhCC-eEEEecCCCcc
Confidence 8886 4555566666665545 88888888743
No 208
>PRK06914 short chain dehydrogenase; Provisional
Probab=93.38 E-value=0.14 Score=52.76 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=54.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHh--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLS-- 472 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~-- 472 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++.+++
T Consensus 4 k~~lItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~ 73 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELA----------KKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQ 73 (280)
T ss_pred CEEEEECCCchHHHHHHHHHH----------hCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHH
Confidence 46888885 899999999997 789999999999887655432 235678999999987753
Q ss_pred ---cCCCCCcEEEEEcC
Q 006034 473 ---AGITSPKAVMIMYT 486 (663)
Q Consensus 473 ---a~i~~a~~vv~~~~ 486 (663)
....+.|.+|-+.+
T Consensus 74 ~~~~~~~~id~vv~~ag 90 (280)
T PRK06914 74 LVLKEIGRIDLLVNNAG 90 (280)
T ss_pred HHHHhcCCeeEEEECCc
Confidence 12245687776653
No 209
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=93.34 E-value=1 Score=46.47 Aligned_cols=108 Identities=12% Similarity=0.040 Sum_probs=65.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCC-CCC-EEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWP-FVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~-~~~-vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++.|+|+|++|+.+++.+.+ .. +.+ +.+.|+|+++.+.+.+. +..+ + +|.+-+- .++|.|
T Consensus 3 rIgIIG~G~iG~~ia~~l~~---------~~~~~elv~v~d~~~~~a~~~a~~~~~~~-~---~~~~ell----~~~DvV 65 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILS---------GRINAELYAFYDRNLEKAENLASKTGAKA-C---LSIDELV----EDVDLV 65 (265)
T ss_pred EEEEECccHHHHHHHHHHHc---------CCCCeEEEEEECCCHHHHHHHHHhcCCee-E---CCHHHHh----cCCCEE
Confidence 58999999999999999862 22 444 55789999998877652 3222 1 2333232 579999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhH----HHHHHcCCCeEEcCc
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHL----LDLKKAGATDAILEN 532 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~----~~~~~----~~l~~~Gad~vi~p~ 532 (663)
+.+++.+.. ...+..+.+.+++ +++... |++.. +..++.|....+.+.
T Consensus 66 vi~a~~~~~-~~~~~~al~~Gk~--Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sg 121 (265)
T PRK13304 66 VECASVNAV-EEVVPKSLENGKD--VIIMSVGALADKELFLKLYKLAKENNCKIYLPSG 121 (265)
T ss_pred EEcCChHHH-HHHHHHHHHcCCC--EEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCc
Confidence 999876543 4444445455544 444221 33322 234556775555443
No 210
>PRK05086 malate dehydrogenase; Provisional
Probab=93.33 E-value=0.73 Score=48.74 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=84.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH---HHHHhcC-CCEEEe-cCCCHHHHHhcCCCCC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV---KESRKLG-FPILYG-DASRPAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~---~~~~~~~-~~vi~G-D~~~~~~L~~a~i~~a 478 (663)
++.|+|. |++|+.++..|... ...++.++++|.++... -.+.+.+ ...+.| +..|. .+ .++++
T Consensus 2 KI~IIGAsG~VG~aia~~l~~~-------~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~--~~--~l~~~ 70 (312)
T PRK05086 2 KVAVLGAAGGIGQALALLLKTQ-------LPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDP--TP--ALEGA 70 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHcC-------CCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCH--HH--HcCCC
Confidence 6899999 99999999887410 03456899999886531 1222212 245666 22331 12 23679
Q ss_pred cEEEEEcCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhHHH------H-HHcCC--CeEEcCchH
Q 006034 479 KAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHLLD------L-KKAGA--TDAILENAE 534 (663)
Q Consensus 479 ~~vv~~~~d---------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~~~~------l-~~~Ga--d~vi~p~~~ 534 (663)
|.||++.+. | ..|. .++...++.+|+ .++..+.||.+.-- + +..|. .+|+---..
T Consensus 71 DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~-~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~L 149 (312)
T PRK05086 71 DVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTL 149 (312)
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecH
Confidence 999888764 1 1232 345566777888 67888888874211 1 23233 456655545
Q ss_pred HHHHHHHHHHHhcCCCHHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~~ 555 (663)
-..++-+.+-+.+++++..++
T Consensus 150 ds~R~~~~ia~~l~~~~~~v~ 170 (312)
T PRK05086 150 DVIRSETFVAELKGKQPGEVE 170 (312)
T ss_pred HHHHHHHHHHHHhCCChhheE
Confidence 555677777777787775554
No 211
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.17 Score=51.82 Aligned_cols=72 Identities=13% Similarity=0.121 Sum_probs=54.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++.++|++..+.+.+. ...++.+|.+|++.++++
T Consensus 7 k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALV----------AAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVA 76 (261)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHH
Confidence 57888886 889999999998 7899999999999877665542 356789999999876542
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~g~id~lv~~a 88 (261)
T PRK08265 77 RFGRVDILVNLA 88 (261)
T ss_pred HhCCCCEEEECC
Confidence 123567666543
No 212
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=93.29 E-value=0.49 Score=51.42 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
...++.|+| .|.+|..+++.|. +.|++|.+.|.++. .+.+ .-+.+||.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~----------~~G~~V~~~d~~~~-----------------~~~~----~~~~~aDl 145 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLT----------LSGYQVRILEQDDW-----------------DRAE----DILADAGM 145 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHH----------HCCCeEEEeCCCcc-----------------hhHH----HHHhcCCE
Confidence 446799998 9999999999998 78999999998642 1111 12457888
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
|+.+++.+...-.+...+. +.|+ .+++-+.+
T Consensus 146 VilavP~~~~~~~~~~l~~-l~~~-~iv~Dv~S 176 (374)
T PRK11199 146 VIVSVPIHLTEEVIARLPP-LPED-CILVDLTS 176 (374)
T ss_pred EEEeCcHHHHHHHHHHHhC-CCCC-cEEEECCC
Confidence 8888888754333322222 4444 56665555
No 213
>PRK07024 short chain dehydrogenase; Provisional
Probab=93.27 E-value=0.17 Score=51.52 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=54.7
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~~L~~a---- 473 (663)
++++|.| .|.+|+.+++.|. ++|++|+++++++++.+...+. ....+.+|.+|++-++++
T Consensus 3 ~~vlItGas~gIG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 72 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYA----------RQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADF 72 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHH
Confidence 4788887 5889999999997 7899999999999887665442 466889999998876543
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
.....|.+|...
T Consensus 73 ~~~~g~id~lv~~a 86 (257)
T PRK07024 73 IAAHGLPDVVIANA 86 (257)
T ss_pred HHhCCCCCEEEECC
Confidence 123467776543
No 214
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.24 E-value=0.66 Score=48.57 Aligned_cols=38 Identities=32% Similarity=0.511 Sum_probs=34.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE 451 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~ 451 (663)
++|.|+|.|.+|..+|+.|. ..|++|++.|.++++.+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~----------~~G~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAA----------AAGMDVWLLDSDPAALSR 42 (295)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hcCCeEEEEeCCHHHHHH
Confidence 46999999999999999997 789999999999988764
No 215
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.21 E-value=0.64 Score=47.86 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=62.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHH-------------------H----HHHHhc--
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSV-------------------V----KESRKL-- 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~-------------------~----~~~~~~-- 455 (663)
.+.||+|+|.|-+|..+++.|. ..| .+++++|.|.-. + +.+.+.
T Consensus 29 ~~s~VlVvG~GGVGs~vae~La----------r~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP 98 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALA----------RTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINP 98 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHH----------HcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCC
Confidence 3568999999999999999997 566 579999988211 1 222221
Q ss_pred CCCEE-EecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 456 GFPIL-YGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 456 ~~~vi-~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
...+. +-+..+++...+.-..++|.||.++++-.....+...+++.+ +++|.
T Consensus 99 ~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~--ip~I~ 151 (268)
T PRK15116 99 ECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK--IPLVT 151 (268)
T ss_pred CcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC--CCEEE
Confidence 12221 112223333333333479999888888777777888888876 45553
No 216
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.19 E-value=0.23 Score=55.46 Aligned_cols=92 Identities=22% Similarity=0.287 Sum_probs=63.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-H----HHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-V----KESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~----~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
++.|+|.|..|...|+.|. +.|++|.+.|.++.. . +.+.+.|..+..|...+.+.++. ..+++|
T Consensus 2 ~v~viG~G~sG~s~a~~l~----------~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~-~~~~~d 70 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLK----------AQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQP-WLDQPD 70 (459)
T ss_pred eEEEEccCHHHHHHHHHHH----------HCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhH-HhhcCC
Confidence 5899999999999999997 899999999976542 2 23566788888887665543322 346788
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
.||...+-+.+|- ....+|+.+ ++++.+
T Consensus 71 ~vv~s~gi~~~~~-~~~~a~~~~--i~v~~~ 98 (459)
T PRK02705 71 LVVVSPGIPWDHP-TLVELRERG--IEVIGE 98 (459)
T ss_pred EEEECCCCCCCCH-HHHHHHHcC--CcEEEh
Confidence 8877665554443 455566654 445443
No 217
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.18 E-value=0.19 Score=50.95 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=56.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+ ....++.+|.+|++.++++
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLA----------QAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVA 78 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 467888886 999999999997 789999999999988765543 2456899999998877553
Q ss_pred ----CCCCCcEEEEEcC
Q 006034 474 ----GITSPKAVMIMYT 486 (663)
Q Consensus 474 ----~i~~a~~vv~~~~ 486 (663)
...+.|.++-..+
T Consensus 79 ~~~~~~~~~d~li~~ag 95 (258)
T PRK06949 79 HAETEAGTIDILVNNSG 95 (258)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 1235677766554
No 218
>PRK09072 short chain dehydrogenase; Provisional
Probab=93.16 E-value=0.19 Score=51.33 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=56.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~~L~~a---- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+. ...++.+|.+|++-.+++
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALA----------AAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 46888885 889999999998 7899999999999887666542 467889999999866542
Q ss_pred -CCCCCcEEEEEcC
Q 006034 474 -GITSPKAVMIMYT 486 (663)
Q Consensus 474 -~i~~a~~vv~~~~ 486 (663)
.....|.++.+.+
T Consensus 76 ~~~~~id~lv~~ag 89 (263)
T PRK09072 76 REMGGINVLINNAG 89 (263)
T ss_pred HhcCCCCEEEECCC
Confidence 1346787776543
No 219
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.07 E-value=0.2 Score=51.61 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=56.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+ .+..++.+|.+|++.++++
T Consensus 3 k~vlVtGasg~IG~~la~~L~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLL----------ARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFA 72 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46889985 899999999997 789999999999988777654 3567889999999877643
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.++-+.
T Consensus 73 ~~~~id~vi~~a 84 (276)
T PRK06482 73 ALGRIDVVVSNA 84 (276)
T ss_pred HcCCCCEEEECC
Confidence 234668776654
No 220
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.06 E-value=0.19 Score=53.74 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=52.1
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-hcCCCEEEecCC-CHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-KLGFPILYGDAS-RPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-~~~~~vi~GD~~-~~~~L~~a~i~~a~~v 481 (663)
+|+|.|. |-+|+.+++.|.+ ..+++|+.+|+++++...+. ..+.+++.||.+ +.+.+.++ ++++|.|
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~---------~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~d~V 72 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILE---------TTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYH-VKKCDVI 72 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHh---------CCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHH-HcCCCEE
Confidence 5999997 9999999999971 34799999998876655443 246889999998 66666553 4578877
Q ss_pred E
Q 006034 482 M 482 (663)
Q Consensus 482 v 482 (663)
+
T Consensus 73 i 73 (347)
T PRK11908 73 L 73 (347)
T ss_pred E
Confidence 7
No 221
>PRK13243 glyoxylate reductase; Reviewed
Probab=93.02 E-value=0.13 Score=54.86 Aligned_cols=83 Identities=22% Similarity=0.309 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+|+.|. ..|.+|.+.|++++... ..+.+.. ..+ ++++ ++++|.|
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~----------~~G~~V~~~d~~~~~~~-~~~~~~~-----~~~---l~el-l~~aDiV 208 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAK----------GFGMRILYYSRTRKPEA-EKELGAE-----YRP---LEEL-LRESDFV 208 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCChhh-HHHcCCE-----ecC---HHHH-HhhCCEE
Confidence 4568999999999999999997 78999999998765432 2222221 112 2221 4578999
Q ss_pred EEEcCCHHHH--HHHHHHHHHhCCC
Q 006034 482 MIMYTDKKRT--IEAVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~~n--~~~~~~~r~~~~~ 504 (663)
++..+..+++ +.-......+.|+
T Consensus 209 ~l~lP~t~~T~~~i~~~~~~~mk~g 233 (333)
T PRK13243 209 SLHVPLTKETYHMINEERLKLMKPT 233 (333)
T ss_pred EEeCCCChHHhhccCHHHHhcCCCC
Confidence 9998876533 3333445555555
No 222
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=93.02 E-value=0.2 Score=53.05 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=53.8
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH---h-----cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR---K-----LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~---~-----~~~~vi~GD~~~~~~L~~a 473 (663)
.++++|.|. |-+|+.+++.|. ++|++|+++.+|++..+... . ....++.||.+|++.++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 74 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLL----------FRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA 74 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHH----------HCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH
Confidence 457899986 899999999997 78999988887776433221 1 2356789999999988764
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
+++.|.++-+.
T Consensus 75 -~~~~d~vih~A 85 (325)
T PLN02989 75 -IDGCETVFHTA 85 (325)
T ss_pred -HcCCCEEEEeC
Confidence 45678776655
No 223
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.98 E-value=0.21 Score=50.97 Aligned_cols=72 Identities=18% Similarity=0.143 Sum_probs=55.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhc--C--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSA--G-- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a--~-- 474 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+ ....++.+|.+|++.++++ +
T Consensus 2 k~vlItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 71 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFA----------AEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFA 71 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 46888886 789999999997 789999999999998777654 2467889999998877653 1
Q ss_pred ---CCCCcEEEEEc
Q 006034 475 ---ITSPKAVMIMY 485 (663)
Q Consensus 475 ---i~~a~~vv~~~ 485 (663)
-.+.|.+|.+.
T Consensus 72 ~~~~~~id~vi~~a 85 (260)
T PRK08267 72 AATGGRLDVLFNNA 85 (260)
T ss_pred HHcCCCCCEEEECC
Confidence 23568776544
No 224
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.97 E-value=0.43 Score=50.56 Aligned_cols=106 Identities=17% Similarity=0.127 Sum_probs=64.7
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----------cCCCE--EEecCCCHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPI--LYGDASRPAVL 470 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----------~~~~v--i~GD~~~~~~L 470 (663)
++|.|+|.|.+|..+|..+. ..|++|++.|.+++..+.+.+ .+... ..+..+-...+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a----------~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l 77 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARAL----------AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATI 77 (321)
T ss_pred CEEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCH
Confidence 57999999999999999997 789999999999987654332 21110 00000111123
Q ss_pred HhcCCCCCcEEEEEcCCHHH--HHHHHHHHHHhCCCCcEEEEecChhhHHHHH
Q 006034 471 LSAGITSPKAVMIMYTDKKR--TIEAVQRLRLAFPAIPIYARAQDMMHLLDLK 521 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~dd~~--n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~ 521 (663)
+ ..+++||.|+-+..++.+ ........+...|+ .|++...+.-....+.
T Consensus 78 ~-~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~-aIlaSnTS~l~~s~la 128 (321)
T PRK07066 78 E-ACVADADFIQESAPEREALKLELHERISRAAKPD-AIIASSTSGLLPTDFY 128 (321)
T ss_pred H-HHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCC-eEEEECCCccCHHHHH
Confidence 2 246899999888887532 22223444444555 3666555544444443
No 225
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.91 E-value=0.48 Score=49.78 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=56.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCE-EEecCCCHHHHH-----hcCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPI-LYGDASRPAVLL-----SAGITS 477 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~v-i~GD~~~~~~L~-----~a~i~~ 477 (663)
.+|.|+|.|.+|..+|+.|. ++|++|.+--+|++.++++.+...+. +.++..-|+.++ +.-+++
T Consensus 2 ~kI~ViGaGswGTALA~~la----------~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ 71 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLA----------RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG 71 (329)
T ss_pred ceEEEEcCChHHHHHHHHHH----------hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc
Confidence 36899999999999999997 78899999999999999988754333 334554444321 123456
Q ss_pred CcEEEEEcCCH
Q 006034 478 PKAVMIMYTDK 488 (663)
Q Consensus 478 a~~vv~~~~dd 488 (663)
+|.++.+++..
T Consensus 72 ad~iv~avPs~ 82 (329)
T COG0240 72 ADIIVIAVPSQ 82 (329)
T ss_pred CCEEEEECChH
Confidence 99999999875
No 226
>PRK06180 short chain dehydrogenase; Provisional
Probab=92.91 E-value=0.22 Score=51.40 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=55.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+. ....+.+|.+|++.+.++
T Consensus 5 ~~vlVtGasggiG~~la~~l~----------~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 74 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAAL----------AAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEA 74 (277)
T ss_pred CEEEEecCCChHHHHHHHHHH----------hCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 46888886 889999999997 7899999999999987766552 466789999999877543
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-+.
T Consensus 75 ~~~~~d~vv~~a 86 (277)
T PRK06180 75 TFGPIDVLVNNA 86 (277)
T ss_pred HhCCCCEEEECC
Confidence 123467666554
No 227
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.89 E-value=0.2 Score=50.42 Aligned_cols=74 Identities=14% Similarity=0.122 Sum_probs=56.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|+.+++.|. ++|+++++++++++..+...+ . ...++.+|.+|++.++++
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 76 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALA----------EAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFD 76 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH
Confidence 367888886 899999999997 789999999999887655432 1 356789999999876542
Q ss_pred ----CCCCCcEEEEEcC
Q 006034 474 ----GITSPKAVMIMYT 486 (663)
Q Consensus 474 ----~i~~a~~vv~~~~ 486 (663)
...+.|.++-+.+
T Consensus 77 ~~~~~~~~id~vi~~ag 93 (250)
T PRK12939 77 AAAAALGGLDGLVNNAG 93 (250)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 1246787776654
No 228
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.87 E-value=0.56 Score=49.69 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=58.5
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
+.-+++.|.|.|-.|....|... ..|.+|+++|+++++.+.+++.|...+.-.. |++..++..- .+|.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Ak----------a~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~-~~d~ 232 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAK----------AMGAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKE-IADA 232 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHH----------HcCCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHh-hCcE
Confidence 35678999999999988888876 6889999999999999999998766655333 6666655432 3998
Q ss_pred EEEEcC
Q 006034 481 VMIMYT 486 (663)
Q Consensus 481 vv~~~~ 486 (663)
++.+.+
T Consensus 233 ii~tv~ 238 (339)
T COG1064 233 IIDTVG 238 (339)
T ss_pred EEECCC
Confidence 888888
No 229
>PRK12829 short chain dehydrogenase; Provisional
Probab=92.87 E-value=0.23 Score=50.61 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=56.1
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc----CCCEEEecCCCHHHHHhc----
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~----~~~vi~GD~~~~~~L~~a---- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|+++++|++..+.+.+. ...++.+|.+|++.++++
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFA----------EAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTA 80 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHH
Confidence 467888876 999999999997 7899999999998877665442 236789999999977542
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 81 ~~~~~~~d~vi~~a 94 (264)
T PRK12829 81 VERFGGLDVLVNNA 94 (264)
T ss_pred HHHhCCCCEEEECC
Confidence 124678777544
No 230
>PRK07074 short chain dehydrogenase; Provisional
Probab=92.86 E-value=0.24 Score=50.28 Aligned_cols=73 Identities=19% Similarity=0.221 Sum_probs=55.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcC----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAG---- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~---- 474 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++..+.+.+ ....++.+|.+|++.++++=
T Consensus 3 k~ilItGat~~iG~~la~~L~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFL----------AAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAA 72 (257)
T ss_pred CEEEEECCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 35788886 899999999997 789999999999988765543 34667899999999775421
Q ss_pred --CCCCcEEEEEcC
Q 006034 475 --ITSPKAVMIMYT 486 (663)
Q Consensus 475 --i~~a~~vv~~~~ 486 (663)
..+.|.++....
T Consensus 73 ~~~~~~d~vi~~ag 86 (257)
T PRK07074 73 AERGPVDVLVANAG 86 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 135687776664
No 231
>PTZ00325 malate dehydrogenase; Provisional
Probab=92.86 E-value=1.8 Score=45.85 Aligned_cols=143 Identities=14% Similarity=0.113 Sum_probs=86.8
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH--HHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV--KESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~--~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++|.|+|. |++|..++..|.. +....+++++|.+.... ..+.+........+.+|+..+ ...++++|
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~--------~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~-~~~l~gaD 78 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQ--------NPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELW-EKALRGAD 78 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhc--------CCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCch-HHHhCCCC
Confidence 358999999 9999999998862 13456899999954322 223322223344455553332 23467899
Q ss_pred EEEEEcCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhhHHHH-------HH--cCCCeEEcCchHH
Q 006034 480 AVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMHLLDL-------KK--AGATDAILENAET 535 (663)
Q Consensus 480 ~vv~~~~dd-----------~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~~l-------~~--~Gad~vi~p~~~~ 535 (663)
+||++.+.. +.|.. ++..+++.+|+ .++..+.++-+.-.. +. .-.++|+--..+-
T Consensus 79 vVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~-~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LD 157 (321)
T PTZ00325 79 LVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPK-AIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLD 157 (321)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHH
Confidence 888877641 23433 44567778888 666667766544322 11 2345566555566
Q ss_pred HHHHHHHHHHhcCCCHHHHH
Q 006034 536 SLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 536 ~~~la~~~~~~~~~~~~~~~ 555 (663)
+.++-..+-+.+++.|..++
T Consensus 158 s~R~r~~la~~l~v~~~~V~ 177 (321)
T PTZ00325 158 VVRARKFVAEALGMNPYDVN 177 (321)
T ss_pred HHHHHHHHHHHhCcChhheE
Confidence 66777777777777775543
No 232
>PLN02858 fructose-bisphosphate aldolase
Probab=92.84 E-value=0.75 Score=58.12 Aligned_cols=111 Identities=12% Similarity=0.126 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++|-++|.|++|..+++.|. ..|+++.+.|+++++++.+.+.+... ..+++.+ ++++|.+
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~----------~~G~~V~v~dr~~~~~~~l~~~Ga~~----~~s~~e~----~~~aDvV 384 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLL----------KSNFSVCGYDVYKPTLVRFENAGGLA----GNSPAEV----AKDVDVL 384 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCee----cCCHHHH----HhcCCEE
Confidence 4467999999999999999997 78999999999999999888766433 2333322 3578999
Q ss_pred EEEcCCHHHHHHHHH----HHHHhCCCCcEEEEecC--hhhH----HHHHH--cCCCeEEcC
Q 006034 482 MIMYTDKKRTIEAVQ----RLRLAFPAIPIYARAQD--MMHL----LDLKK--AGATDAILE 531 (663)
Q Consensus 482 v~~~~dd~~n~~~~~----~~r~~~~~~~iia~~~~--~~~~----~~l~~--~Gad~vi~p 531 (663)
+++..|++.--.+.. .+..+.++ .++.-..+ ++.. +.+++ .|+..+=.|
T Consensus 385 i~~V~~~~~v~~Vl~g~~g~~~~l~~g-~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP 445 (1378)
T PLN02858 385 VIMVANEVQAENVLFGDLGAVSALPAG-ASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP 445 (1378)
T ss_pred EEecCChHHHHHHHhchhhHHhcCCCC-CEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 999998754322221 22333444 55554443 4433 34455 677766656
No 233
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=92.82 E-value=0.17 Score=53.39 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=53.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH---HHHh-----cCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK---ESRK-----LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~---~~~~-----~~~~vi~GD~~~~~~L~~a~ 474 (663)
++++|.|. |-+|+.+++.|. ++|++|+++++|++... .+.. .+..++.||.+|++.++++
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~- 73 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLL----------QRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV- 73 (322)
T ss_pred CEEEEECChHHHHHHHHHHHH----------HCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-
Confidence 57999995 999999999998 78999999988765422 2211 2457899999999887664
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
++++|.|+-+.
T Consensus 74 ~~~~d~Vih~A 84 (322)
T PLN02662 74 VDGCEGVFHTA 84 (322)
T ss_pred HcCCCEEEEeC
Confidence 34678776654
No 234
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.80 E-value=0.49 Score=53.21 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=68.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCH-------------H
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRP-------------A 468 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~-------------~ 468 (663)
...+|+|+|.|.+|...++.++ ..|.+|+++|.++++.+.+++.|...+.-|..++ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak----------~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~ 233 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAG----------SLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEE 233 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchh
Confidence 4678999999999999999997 7888999999999999999998877543333221 1
Q ss_pred HHH------hcCCCCCcEEEEEcCCHH---HHHHHHHHHHHhCCCCcEEEEe
Q 006034 469 VLL------SAGITSPKAVMIMYTDKK---RTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 469 ~L~------~a~i~~a~~vv~~~~dd~---~n~~~~~~~r~~~~~~~iia~~ 511 (663)
..+ .-.++.+|.+|-+...+. ..+..-...+.+.|.-.|+-..
T Consensus 234 ~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 234 FIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 111 113467998888887532 1122345566666664444333
No 235
>PLN03139 formate dehydrogenase; Provisional
Probab=92.77 E-value=0.29 Score=53.12 Aligned_cols=86 Identities=17% Similarity=0.168 Sum_probs=55.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++-|+|+|++|+.+++.|. ..|.+|.+.|+++...+...+.+... -+ +=++++ .++|.|
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~----------afG~~V~~~d~~~~~~~~~~~~g~~~--~~-~l~ell-----~~sDvV 259 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLK----------PFNCNLLYHDRLKMDPELEKETGAKF--EE-DLDAML-----PKCDVV 259 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHH----------HCCCEEEEECCCCcchhhHhhcCcee--cC-CHHHHH-----hhCCEE
Confidence 3468999999999999999997 78999999998754333333333221 11 112233 568989
Q ss_pred EEEcCCHHHHH--HHHHHHHHhCCCC
Q 006034 482 MIMYTDKKRTI--EAVQRLRLAFPAI 505 (663)
Q Consensus 482 v~~~~dd~~n~--~~~~~~r~~~~~~ 505 (663)
++..+..+++. .-......+.|+.
T Consensus 260 ~l~lPlt~~T~~li~~~~l~~mk~ga 285 (386)
T PLN03139 260 VINTPLTEKTRGMFNKERIAKMKKGV 285 (386)
T ss_pred EEeCCCCHHHHHHhCHHHHhhCCCCe
Confidence 88888755443 3334555555553
No 236
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=92.76 E-value=0.41 Score=54.05 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=50.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc------CCCEE-------EecCCCHHHHH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL------GFPIL-------YGDASRPAVLL 471 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~------~~~vi-------~GD~~~~~~L~ 471 (663)
+|-|+|.|.+|..+|..|. ..|++|++.|.+++..+.+.+. ...-+ .|..+-.+.++
T Consensus 6 kIavIG~G~MG~~iA~~la----------~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ 75 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFL----------LAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLA 75 (495)
T ss_pred EEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHH
Confidence 6999999999999999997 7899999999999987664320 00000 01111011232
Q ss_pred hcCCCCCcEEEEEcCCHH
Q 006034 472 SAGITSPKAVMIMYTDKK 489 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~dd~ 489 (663)
+ -+++||.|+.+..++.
T Consensus 76 e-a~~~aD~Vieavpe~~ 92 (495)
T PRK07531 76 E-AVAGADWIQESVPERL 92 (495)
T ss_pred H-HhcCCCEEEEcCcCCH
Confidence 2 2578999998888864
No 237
>PRK09414 glutamate dehydrogenase; Provisional
Probab=92.76 E-value=0.41 Score=52.80 Aligned_cols=112 Identities=14% Similarity=0.130 Sum_probs=73.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEE-e----------CChHHHHHHHhcC---CCEEE---e-c-
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-D----------LNPSVVKESRKLG---FPILY---G-D- 463 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d----------~d~~~~~~~~~~~---~~vi~---G-D- 463 (663)
..+++|.|+|++|+.+|+.|. +.|.+|+.+ | .|.+.+....+.. ..-+. | +
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~----------~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~ 301 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQ----------QLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY 301 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee
Confidence 468999999999999999997 789999988 8 7877665544321 11110 0 1
Q ss_pred CCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHcCCCeEEcCc
Q 006034 464 ASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 464 ~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~----~~~~~~~l~~~Gad~vi~p~ 532 (663)
.++++.+. .++|.++=+...+..|-.-+...+. .++++|+..- +++..+.|++-|+- +.|.
T Consensus 302 i~~~~i~~----~d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~~rGI~--~vPD 366 (445)
T PRK09414 302 LEGGSPWS----VPCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFLEAGVL--FAPG 366 (445)
T ss_pred cCCccccc----cCCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHHHCCcE--EECc
Confidence 12333332 3789887777665555554444443 2467777544 35778888888874 4476
No 238
>PRK06057 short chain dehydrogenase; Provisional
Probab=92.73 E-value=0.29 Score=49.75 Aligned_cols=72 Identities=19% Similarity=0.153 Sum_probs=55.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhc------CC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA------GI 475 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a------~i 475 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ .+..++..|.+|++-++++ ..
T Consensus 8 ~~vlItGasggIG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLA----------AEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 57899988 999999999997 789999999999887766544 3346889999998866532 12
Q ss_pred CCCcEEEEEc
Q 006034 476 TSPKAVMIMY 485 (663)
Q Consensus 476 ~~a~~vv~~~ 485 (663)
.+.|.++-..
T Consensus 78 ~~id~vi~~a 87 (255)
T PRK06057 78 GSVDIAFNNA 87 (255)
T ss_pred CCCCEEEECC
Confidence 3567776654
No 239
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.73 E-value=0.21 Score=50.77 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=55.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|++.+++++..+...+ .+ ...+.+|.+|++-++++
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~ 79 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLA----------QAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAID 79 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHH
Confidence 357888886 899999999997 789999999999887654432 22 56788999998877653
Q ss_pred ----CCCCCcEEEEEcC
Q 006034 474 ----GITSPKAVMIMYT 486 (663)
Q Consensus 474 ----~i~~a~~vv~~~~ 486 (663)
.....|.+|-...
T Consensus 80 ~~~~~~~~~d~li~~ag 96 (255)
T PRK07523 80 AFEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 1235677766553
No 240
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.73 E-value=0.19 Score=56.29 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=53.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---------------------HHHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---------------------~~~~~~~~~~~vi 460 (663)
..++++|+|.|..|...|..|. ..|++|+++|.++. ..+.+.+.|..+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~----------~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~ 209 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILA----------RAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFH 209 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEE
Confidence 4578999999999999999998 78999999998752 3455666777665
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCCH
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~dd 488 (663)
.+..-+.+ .+++. ..++|.++++++..
T Consensus 210 ~~~~v~~~~~~~~~-~~~~D~vilAtGa~ 237 (467)
T TIGR01318 210 LNCEVGRDISLDDL-LEDYDAVFLGVGTY 237 (467)
T ss_pred CCCEeCCccCHHHH-HhcCCEEEEEeCCC
Confidence 54321111 11221 13689999999864
No 241
>PLN02602 lactate dehydrogenase
Probab=92.73 E-value=1 Score=48.33 Aligned_cols=138 Identities=17% Similarity=0.223 Sum_probs=83.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHhc----CCCEEEecCCCHHHHHhcCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRKL----GFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~~----~~~vi~GD~~~~~~L~~a~i 475 (663)
.+|.|+|.|++|..++-.|.. .....+++++|.+++.++- +.+. +..-+.++ .|.+ .+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~--------~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~-~dy~-----~~ 103 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT--------QDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAS-TDYA-----VT 103 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh--------CCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeC-CCHH-----Hh
Confidence 589999999999999998861 1233479999999876432 2221 11233332 2222 36
Q ss_pred CCCcEEEEEcCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhHH---HHHHcC--CCeEEcC-chH
Q 006034 476 TSPKAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHLL---DLKKAG--ATDAILE-NAE 534 (663)
Q Consensus 476 ~~a~~vv~~~~d---------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~~~---~l~~~G--ad~vi~p-~~~ 534 (663)
++||.||++.+. | ..|. .++...++.+|+. ++..+.||.+.- ..+..| -.+|+-- ..+
T Consensus 104 ~daDiVVitAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~-ivivvtNPvdv~t~~~~k~sg~p~~rviG~gt~L 182 (350)
T PLN02602 104 AGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDT-ILLIVSNPVDVLTYVAWKLSGFPANRVIGSGTNL 182 (350)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCchHHHHHHHHHHhCCCHHHEEeecchH
Confidence 899988887442 2 3454 3556667778884 455555665432 234455 3456544 344
Q ss_pred HHHHHHHHHHHhcCCCHHHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDVTF 556 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~~~ 556 (663)
-..++-+.+-+.+++++..++.
T Consensus 183 Ds~R~r~~lA~~l~v~~~~V~~ 204 (350)
T PLN02602 183 DSSRFRFLIADHLDVNAQDVQA 204 (350)
T ss_pred HHHHHHHHHHHHhCCCccceee
Confidence 4556666666777777765543
No 242
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=92.73 E-value=0.24 Score=50.16 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=54.8
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------C
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------~ 474 (663)
+++|.|. |.+|..+++.|. ++|++|+++++++++.+.+.+ .....+.+|.+|++.++++ .
T Consensus 2 ~vlItGasg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFI----------QQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred EEEEECCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4778885 889999999997 789999999999988776654 2466789999999877542 2
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
..+.|.++...
T Consensus 72 ~~~id~vi~~a 82 (248)
T PRK10538 72 WRNIDVLVNNA 82 (248)
T ss_pred cCCCCEEEECC
Confidence 24678777543
No 243
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.70 E-value=3 Score=39.83 Aligned_cols=72 Identities=21% Similarity=0.366 Sum_probs=51.0
Q ss_pred cccCchhHHHHHHHHHHhccCC----CcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHH
Q 006034 4 RILCRSQILGFFFAGIVLNQLG----IIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLS 75 (663)
Q Consensus 4 ~rl~lP~ivg~ilaGillGp~g----lv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~ 75 (663)
+++++-...|-+++|+++|.++ ...+....+.+.++|+.++++..|++--++.+...++..+.....+++++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~ 94 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIIT 94 (169)
T ss_pred cceeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456666779999999999753 22355677899999999999999999988766554444344433333333
No 244
>PLN02686 cinnamoyl-CoA reductase
Probab=92.69 E-value=0.19 Score=54.38 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=51.9
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----------cCCCEEEecCCCHHH
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPAV 469 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----------~~~~vi~GD~~~~~~ 469 (663)
..++|+|.|. |-+|+.+++.|. ++|++|+++.++++..+.+.+ .+..++.||.+|++.
T Consensus 52 ~~k~VLVTGatGfIG~~lv~~L~----------~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~ 121 (367)
T PLN02686 52 EARLVCVTGGVSFLGLAIVDRLL----------RHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPES 121 (367)
T ss_pred CCCEEEEECCchHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHH
Confidence 3457889987 899999999997 789999988777765544432 135678999999998
Q ss_pred HHhcCCCCCcEEE
Q 006034 470 LLSAGITSPKAVM 482 (663)
Q Consensus 470 L~~a~i~~a~~vv 482 (663)
++++ ++++|.++
T Consensus 122 l~~~-i~~~d~V~ 133 (367)
T PLN02686 122 LHEA-FDGCAGVF 133 (367)
T ss_pred HHHH-HHhccEEE
Confidence 7654 34456544
No 245
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.69 E-value=0.88 Score=46.63 Aligned_cols=66 Identities=14% Similarity=0.141 Sum_probs=46.3
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCC---CEEEEeCChHHHHHHHhcC--CCEEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW---PFVAFDLNPSVVKESRKLG--FPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~---~vvvid~d~~~~~~~~~~~--~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
+|-|+|+|++|+.+++.|. +.++ .+.+.++++++.+.+.+.. ..+. . +..+.. +++|
T Consensus 2 ~IgiIG~G~mG~aia~~L~----------~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~-~--~~~~~~-----~~aD 63 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLL----------TSPADVSEIIVSPRNAQIAARLAERFPKVRIA-K--DNQAVV-----DRSD 63 (258)
T ss_pred eEEEECcCHHHHHHHHHHH----------hCCCChheEEEECCCHHHHHHHHHHcCCceEe-C--CHHHHH-----HhCC
Confidence 4889999999999999997 4443 3578899999988877642 2221 1 122233 3689
Q ss_pred EEEEEcCCH
Q 006034 480 AVMIMYTDK 488 (663)
Q Consensus 480 ~vv~~~~dd 488 (663)
.|++++.++
T Consensus 64 vVilav~p~ 72 (258)
T PRK06476 64 VVFLAVRPQ 72 (258)
T ss_pred EEEEEeCHH
Confidence 999998854
No 246
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.67 E-value=0.24 Score=49.95 Aligned_cols=73 Identities=16% Similarity=0.105 Sum_probs=56.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a---- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|+++++++++.+.+.+ ....++.+|.+|++-++++
T Consensus 6 ~~vlItGasg~iG~~l~~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFA----------AEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred cEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46888886 889999999997 789999999999987665543 2356889999999988653
Q ss_pred --CCCCCcEEEEEcC
Q 006034 474 --GITSPKAVMIMYT 486 (663)
Q Consensus 474 --~i~~a~~vv~~~~ 486 (663)
...+.|.+|-...
T Consensus 76 ~~~~~~~d~vi~~ag 90 (251)
T PRK07231 76 LERFGSVDILVNNAG 90 (251)
T ss_pred HHHhCCCCEEEECCC
Confidence 2245787776553
No 247
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=92.62 E-value=0.23 Score=50.49 Aligned_cols=72 Identities=13% Similarity=0.102 Sum_probs=55.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++|+++.+...+. ....+.+|.+|++.++++
T Consensus 7 ~~vlItGas~~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYL----------AEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVE 76 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 46888885 899999999997 7899999999999987665542 356788999999877543
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~id~li~~a 88 (257)
T PRK07067 77 RFGGIDILFNNA 88 (257)
T ss_pred HcCCCCEEEECC
Confidence 123567776543
No 248
>PRK12828 short chain dehydrogenase; Provisional
Probab=92.58 E-value=0.31 Score=48.63 Aligned_cols=72 Identities=18% Similarity=0.129 Sum_probs=53.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHhcCCCEEEecCCCHHHHHhc-----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRKLGFPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~~~~~vi~GD~~~~~~L~~a----- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++|+++.+. +.+.+..++.+|.+|++-++++
T Consensus 8 k~vlItGatg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLA----------ARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVN 77 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHH----------HCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHH
Confidence 46788875 999999999997 679999999998876433 3345677889999998876542
Q ss_pred -CCCCCcEEEEEc
Q 006034 474 -GITSPKAVMIMY 485 (663)
Q Consensus 474 -~i~~a~~vv~~~ 485 (663)
.....|.++-..
T Consensus 78 ~~~~~~d~vi~~a 90 (239)
T PRK12828 78 RQFGRLDALVNIA 90 (239)
T ss_pred HHhCCcCEEEECC
Confidence 123567766554
No 249
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=92.58 E-value=0.42 Score=50.01 Aligned_cols=119 Identities=9% Similarity=0.045 Sum_probs=71.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCCh---HHHHHHHh----cC--CCEEEecCCCHHHHHh
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP---SVVKESRK----LG--FPILYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~---~~~~~~~~----~~--~~vi~GD~~~~~~L~~ 472 (663)
.++++|+|.|-.|+.++..|. +.|.+ +.++++++ ++.+.+.+ .+ ..+...|.+|.+-+++
T Consensus 126 ~k~vlI~GAGGagrAia~~La----------~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 126 GKKLTVIGAGGAATAIQVQCA----------LDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 457999999999999999997 67876 99999997 56555443 11 2345567777666543
Q ss_pred cCCCCCcEEEEEcCCHH---HHHHHHHHHHHhCCCCcEEEEecChhhHHHH---HHcCCCeEEcCch
Q 006034 473 AGITSPKAVMIMYTDKK---RTIEAVQRLRLAFPAIPIYARAQDMMHLLDL---KKAGATDAILENA 533 (663)
Q Consensus 473 a~i~~a~~vv~~~~dd~---~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l---~~~Gad~vi~p~~ 533 (663)
.++++|.+|-+|+-.. .+-.-......+.++..++=.+.++...+.+ ++.|+ .+++-..
T Consensus 196 -~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~-~~~~G~~ 260 (289)
T PRK12548 196 -EIASSDILVNATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAEAAGC-KTVGGLG 260 (289)
T ss_pred -hhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHHHCCC-eeeCcHH
Confidence 4667898888885210 0000000012233443344455565544444 55576 4556554
No 250
>PRK06194 hypothetical protein; Provisional
Probab=92.51 E-value=0.22 Score=51.62 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=53.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhcC--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSAG-- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a~-- 474 (663)
++++|.|. |.+|+.+++.|. ++|++|+++|++++..+...+ .+ ..++.+|.+|++.++++-
T Consensus 7 k~vlVtGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGA----------ALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHH----------HCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 56888886 789999999997 789999999999876554432 23 455899999998776531
Q ss_pred ----CCCCcEEEEEc
Q 006034 475 ----ITSPKAVMIMY 485 (663)
Q Consensus 475 ----i~~a~~vv~~~ 485 (663)
..+.|.++-..
T Consensus 77 ~~~~~g~id~vi~~A 91 (287)
T PRK06194 77 ALERFGAVHLLFNNA 91 (287)
T ss_pred HHHHcCCCCEEEECC
Confidence 12457666554
No 251
>PRK08177 short chain dehydrogenase; Provisional
Probab=92.51 E-value=0.24 Score=49.29 Aligned_cols=72 Identities=21% Similarity=0.191 Sum_probs=54.2
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhc----CCCC
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSA----GITS 477 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a----~i~~ 477 (663)
++++|.| .|.+|+.+++.|. +.|++|++++++++..+.+.+ .+..+..+|.+|++.++++ .=.+
T Consensus 2 k~vlItG~sg~iG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLL----------ERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQR 71 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------hCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCC
Confidence 3578887 5899999999998 789999999999887665544 3567788999998755442 1135
Q ss_pred CcEEEEEc
Q 006034 478 PKAVMIMY 485 (663)
Q Consensus 478 a~~vv~~~ 485 (663)
.|.++...
T Consensus 72 id~vi~~a 79 (225)
T PRK08177 72 FDLLFVNA 79 (225)
T ss_pred CCEEEEcC
Confidence 78776554
No 252
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=92.49 E-value=0.49 Score=56.27 Aligned_cols=70 Identities=19% Similarity=0.267 Sum_probs=51.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
+++.|+|+|++|..+++.|. +.| .+|.++|+++++.+.+.+.+... . ..++. ++ .++++|.+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~----------~~G~~~~V~~~d~~~~~~~~a~~~g~~~-~-~~~~~---~~-~~~~aDvV 67 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALR----------ERGLAREVVAVDRRAKSLELAVSLGVID-R-GEEDL---AE-AVSGADVI 67 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHH----------hcCCCCEEEEEECChhHHHHHHHCCCCC-c-ccCCH---HH-HhcCCCEE
Confidence 57999999999999999997 556 57999999999988877766421 0 11121 11 24688999
Q ss_pred EEEcCCHH
Q 006034 482 MIMYTDKK 489 (663)
Q Consensus 482 v~~~~dd~ 489 (663)
+.+++.+.
T Consensus 68 ilavp~~~ 75 (735)
T PRK14806 68 VLAVPVLA 75 (735)
T ss_pred EECCCHHH
Confidence 99998753
No 253
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=92.48 E-value=0.15 Score=55.42 Aligned_cols=108 Identities=23% Similarity=0.282 Sum_probs=68.9
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
+++.|+|.|+.|+.+++... +.|++|+++|.+++. +... ....+.+|..|++.+.+.- +++|.+
T Consensus 3 ~~igilG~Gql~~ml~~aa~----------~lG~~v~~~d~~~~~pa~~~---ad~~~~~~~~D~~~l~~~a-~~~dvi- 67 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAA----------PLGYKVIVLDPDPDSPAAQV---ADEVIVADYDDVAALRELA-EQCDVI- 67 (372)
T ss_pred CEEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCCCCchhHh---CceEEecCCCCHHHHHHHH-hcCCEE-
Confidence 36899999999999999997 789999999998765 2222 2456778999999887763 578854
Q ss_pred EEcCCHHHHHHHHHHHHH---hCCCCcEEEEecCh-hhHHHHHHcCCCe
Q 006034 483 IMYTDKKRTIEAVQRLRL---AFPAIPIYARAQDM-MHLLDLKKAGATD 527 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~---~~~~~~iia~~~~~-~~~~~l~~~Gad~ 527 (663)
+.+.+..+......+.+ ..|+...+..+.|. ...+.++++|+..
T Consensus 68 -t~e~e~i~~~~l~~l~~~~~~~p~~~~~~~~~dK~~~k~~l~~~Gip~ 115 (372)
T PRK06019 68 -TYEFENVPAEALDALAARVPVPPGPDALAIAQDRLTEKQFLDKLGIPV 115 (372)
T ss_pred -EeCcCCCCHHHHHHHhcCCeeCcCHHHHHHhcCHHHHHHHHHHCCCCC
Confidence 33322222222222212 23343344444444 3455667777763
No 254
>PRK06924 short chain dehydrogenase; Provisional
Probab=92.47 E-value=0.26 Score=49.85 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=46.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHHHHHHh---cCCCEEEecCCCHHHHHh
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRK---LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~~~~~~---~~~~vi~GD~~~~~~L~~ 472 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++ +..+.+.+ .+..++.+|.+|++.+++
T Consensus 2 k~vlItGasggiG~~ia~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 65 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLL----------EKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELET 65 (251)
T ss_pred cEEEEecCCchHHHHHHHHHH----------hcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHH
Confidence 36888885 999999999997 7899999999987 45554443 246688999999987754
No 255
>PRK06940 short chain dehydrogenase; Provisional
Probab=92.46 E-value=0.27 Score=50.88 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=52.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hcC--CCEEEecCCCHHHHHhc---
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~~--~~vi~GD~~~~~~L~~a--- 473 (663)
++.++|.|.|.+|+.+++.|. .|++|++++++++..+... +.+ ..++.+|.+|++.++++
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-----------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~ 70 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-----------AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAAT 70 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-----------CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 457899999999999999994 5899999999987655443 223 45688999998876543
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 71 ~~~~g~id~li~nA 84 (275)
T PRK06940 71 AQTLGPVTGLVHTA 84 (275)
T ss_pred HHhcCCCCEEEECC
Confidence 123567776544
No 256
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.46 E-value=0.25 Score=49.83 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=54.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |-+|+.+++.|. +.|++|++++++++..+...+ . ....+..|.+|++.++++
T Consensus 7 k~vlItGasg~iG~~la~~l~----------~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALA----------REGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADA 76 (250)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 56899987 999999999997 789999999999876544432 2 345688999999866431
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
.....|.+|-..+
T Consensus 77 ~~~~~~~id~vi~~ag 92 (250)
T PRK07774 77 TVSAFGGIDYLVNNAA 92 (250)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1235788876554
No 257
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=92.45 E-value=0.26 Score=49.87 Aligned_cols=72 Identities=14% Similarity=0.075 Sum_probs=55.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ .....+.+|.+|++.++++
T Consensus 5 ~~vlItG~sg~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 74 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALA----------KEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDY 74 (258)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 57888885 999999999997 789999999999887655432 2356789999999977553
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
.....|.+|.+.
T Consensus 75 ~~~~~~~~d~vi~~a 89 (258)
T PRK12429 75 AVETFGGVDILVNNA 89 (258)
T ss_pred HHHHcCCCCEEEECC
Confidence 123578777655
No 258
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=92.44 E-value=0.49 Score=50.25 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=46.9
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChHHHHHHHh-cCCCEEEecCC--------------CHHH
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK-LGFPILYGDAS--------------RPAV 469 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~~~~~~~-~~~~vi~GD~~--------------~~~~ 469 (663)
|.|.|||++|+.+++.+.+ ..+.+++.| |.+++....+.. .++..+++... +.+-
T Consensus 1 VaInG~GrIGr~varav~~---------~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~ee 71 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTK---------QDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLED 71 (333)
T ss_pred CEEECCcHHHHHHHHHHhh---------CCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHH
Confidence 4689999999999999862 456676654 777776555543 56666653322 1222
Q ss_pred HHhcCCCCCcEEEEEcCCH
Q 006034 470 LLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~dd 488 (663)
+ .+++|.|+.+|+..
T Consensus 72 L----l~~vDiVve~Tp~~ 86 (333)
T TIGR01546 72 L----LEKVDIVVDATPGG 86 (333)
T ss_pred H----hhcCCEEEECCCCC
Confidence 2 15799999888764
No 259
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=92.44 E-value=4.5 Score=45.11 Aligned_cols=96 Identities=23% Similarity=0.301 Sum_probs=55.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+++++|+|.|+-|+.+++.|++ ..+.+++++ .+|.|++..... .+.+++ |+..| .-+...-.++|.
T Consensus 127 ~~~rvLIiGag~~~~~l~~~L~~-------~~~~g~~vvG~idd~~~~~~~~--~gvpVl-g~~~d--l~~~i~~~~vd~ 194 (451)
T TIGR03023 127 NLRRVLIVGAGELGRRLAERLAR-------NPELGYRVVGFFDDRPDARTGV--RGVPVL-GKLDD--LEELIREGEVDE 194 (451)
T ss_pred CCCcEEEEeCCHHHHHHHHHHHh-------CccCCcEEEEEEeCCCcccccc--CCCCcc-CCHHH--HHHHHHhcCCCE
Confidence 35689999999999999999962 012345554 457666543221 345543 44333 222223356788
Q ss_pred EEEEcCCHH-H-HHHHHHHHHHhCCCCcEEE
Q 006034 481 VMIMYTDKK-R-TIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 481 vv~~~~dd~-~-n~~~~~~~r~~~~~~~iia 509 (663)
|+++.++.+ . -..+...+++.+.+++++-
T Consensus 195 ViIA~p~~~~~~~~~ll~~~~~~gv~V~vvP 225 (451)
T TIGR03023 195 VYIALPLAAEDRILELLDALEDLTVDVRLVP 225 (451)
T ss_pred EEEeeCcccHHHHHHHHHHHHhcCCEEEEeC
Confidence 888877642 2 2345556666665544443
No 260
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.42 E-value=0.84 Score=52.31 Aligned_cols=69 Identities=16% Similarity=0.208 Sum_probs=51.5
Q ss_pred cccCchhHHHHHHHHHHhccCCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 006034 4 RILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 76 (663)
Q Consensus 4 ~rl~lP~ivg~ilaGillGp~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~ 76 (663)
+.+++-.+.|-+++|+++|.+|.- .-+.+.++|+++++|.+|++.-++.++..+|+.+...+..++...
T Consensus 31 ~~~~LG~~~gvLfvgl~~G~~g~~----i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~a~~~~~ 99 (562)
T TIGR03802 31 GSFQLGGVAGSLIVAVLIGQLGIQ----IDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLREIILALVFAV 99 (562)
T ss_pred eeeecchHHHHHHHHHHHHhcCCC----CChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHHHHHHHHHHH
Confidence 345666678899999999988752 222477899999999999999999888777765555555444443
No 261
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=92.40 E-value=0.46 Score=42.61 Aligned_cols=91 Identities=21% Similarity=0.140 Sum_probs=53.9
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChHHHHHHHhcC--C-CEEEecCCCHHHHHhcCCCCCc
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRKLG--F-PILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~~~~~~~~~--~-~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
++.|+| .|..|+.+++.|.+ .++.++..+ ++++++.+.+++.+ . ++...+.+ .+.++ ..++|
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~---------~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~D 67 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAE---------HPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE---ELAVD 67 (122)
T ss_pred CEEEECCCChHHHHHHHHHhc---------CCCceEEEEEechhhcCcCHHHHCcccccccccccc-cCChh---hcCCC
Confidence 478999 59999999999972 467888877 65554444444322 1 12222332 23333 25889
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
.++++++++...-.+....+...++ +++.
T Consensus 68 vV~~~~~~~~~~~~~~~~~~~~~~g-~~vi 96 (122)
T smart00859 68 IVFLALPHGVSKEIAPLLPKAAEAG-VKVI 96 (122)
T ss_pred EEEEcCCcHHHHHHHHHHHhhhcCC-CEEE
Confidence 9999999875433332233444555 4444
No 262
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=92.38 E-value=0.22 Score=55.08 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..++++|+|.|.+|+.+++.|. ..|. ++++.++++++.+.+.+ .+..++ +.+.+.+ .+.++|
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~----------~~G~~~V~v~~r~~~ra~~la~~~g~~~~-----~~~~~~~-~l~~aD 244 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLA----------EKGVRKITVANRTLERAEELAEEFGGEAI-----PLDELPE-ALAEAD 244 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHH----------HCCCCeEEEEeCCHHHHHHHHHHcCCcEe-----eHHHHHH-HhccCC
Confidence 3468999999999999999997 6676 79999999999876655 332222 2223332 356899
Q ss_pred EEEEEcCCHHH
Q 006034 480 AVMIMYTDKKR 490 (663)
Q Consensus 480 ~vv~~~~dd~~ 490 (663)
.||.+|+.+..
T Consensus 245 vVI~aT~s~~~ 255 (423)
T PRK00045 245 IVISSTGAPHP 255 (423)
T ss_pred EEEECCCCCCc
Confidence 99999987543
No 263
>PTZ00117 malate dehydrogenase; Provisional
Probab=92.37 E-value=0.72 Score=48.95 Aligned_cols=137 Identities=16% Similarity=0.216 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHH--H--Hh----cCCC-EEEecCCCHHHHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKE--S--RK----LGFP-ILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~--~--~~----~~~~-vi~GD~~~~~~L~ 471 (663)
.+.+|.|+|.|.+|..++..+. ..+ .+++++|.|+++.+. + .. .+.. -+.+ .+|.+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~----------~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~-~~d~~--- 69 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLIL----------QKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG-TNNYE--- 69 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHH----------HCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEe-CCCHH---
Confidence 3558999999999999999886 445 579999999876432 1 11 1111 2222 13333
Q ss_pred hcCCCCCcEEEEEcCC---------H--HHHH----HHHHHHHHhCCCCcEEEEecChhhH--HHHHH-cC--CCeEEcC
Q 006034 472 SAGITSPKAVMIMYTD---------K--KRTI----EAVQRLRLAFPAIPIYARAQDMMHL--LDLKK-AG--ATDAILE 531 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~d---------d--~~n~----~~~~~~r~~~~~~~iia~~~~~~~~--~~l~~-~G--ad~vi~p 531 (663)
.+.+||.||++.+. | ..|. .++...++.+|+. ++..+.||.+. ..+.+ .| ..+++--
T Consensus 70 --~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a-~vivvsNP~di~t~~~~~~s~~p~~rviG~ 146 (319)
T PTZ00117 70 --DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNA-FVICVTNPLDCMVKVFQEKSGIPSNKICGM 146 (319)
T ss_pred --HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecChHHHHHHHHHHhhCCCcccEEEe
Confidence 34788988887722 1 1122 3555666677874 44455665433 23333 34 3456633
Q ss_pred c-hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 532 N-AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 532 ~-~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
. ..-..++-+.+.+.+++++..++
T Consensus 147 gt~lds~R~~~~la~~l~v~~~~v~ 171 (319)
T PTZ00117 147 AGVLDSSRFRCNLAEKLGVSPGDVS 171 (319)
T ss_pred cchHHHHHHHHHHHHHhCCCcccce
Confidence 3 33344566666677788776544
No 264
>PRK09186 flagellin modification protein A; Provisional
Probab=92.32 E-value=0.29 Score=49.55 Aligned_cols=73 Identities=15% Similarity=0.187 Sum_probs=53.4
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++.++++
T Consensus 4 ~k~vlItGas~giG~~~a~~l~----------~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~ 73 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAIL----------EAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEF 73 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHH
Confidence 357888886 799999999998 789999999999887655432 1234568999999877553
Q ss_pred --C----CCCCcEEEEEc
Q 006034 474 --G----ITSPKAVMIMY 485 (663)
Q Consensus 474 --~----i~~a~~vv~~~ 485 (663)
. ....|.+|-..
T Consensus 74 ~~~~~~~~~~id~vi~~A 91 (256)
T PRK09186 74 LSKSAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHHHHcCCccEEEECC
Confidence 1 12367776543
No 265
>PLN02858 fructose-bisphosphate aldolase
Probab=92.31 E-value=0.9 Score=57.42 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..++|-++|.|++|..+++.|. +.|++|.+.|+++++++.+.+.|..+. .++.-+ .+++|.|
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~----------~~G~~v~v~dr~~~~~~~l~~~Ga~~~----~s~~e~----a~~advV 64 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLL----------RSGFKVQAFEISTPLMEKFCELGGHRC----DSPAEA----AKDAAAL 64 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHH----------HCCCeEEEEcCCHHHHHHHHHcCCeec----CCHHHH----HhcCCEE
Confidence 3567999999999999999997 789999999999999999998775432 233322 2578999
Q ss_pred EEEcCCHHHHHHHHH----HHHHhCCCCcEEEEec--Chhh----HHHHHHcC--CCeEEcC
Q 006034 482 MIMYTDKKRTIEAVQ----RLRLAFPAIPIYARAQ--DMMH----LLDLKKAG--ATDAILE 531 (663)
Q Consensus 482 v~~~~dd~~n~~~~~----~~r~~~~~~~iia~~~--~~~~----~~~l~~~G--ad~vi~p 531 (663)
+++..|++.-..+.. .+..+.|+ +++.-.. +++. .+.+++.| ++.+=.|
T Consensus 65 i~~l~~~~~v~~V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaP 125 (1378)
T PLN02858 65 VVVLSHPDQVDDVFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERKEQIFLVDAY 125 (1378)
T ss_pred EEEcCChHHHHHHHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 999988764333321 23334444 4555433 4433 34456778 5554444
No 266
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=92.25 E-value=0.57 Score=49.94 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=53.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.++.|+|+|++|+.+|+.|. ..|.+|++.|++++...... .. ..+ +++ -++++|.++.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~----------~~G~~V~~~d~~~~~~~~~~-------~~-~~~---l~e-ll~~aDiVil 204 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYA----------GFGATITAYDAYPNKDLDFL-------TY-KDS---VKE-AIKDADIISL 204 (330)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCEEEEEeCChhHhhhhh-------hc-cCC---HHH-HHhcCCEEEE
Confidence 46999999999999999997 78999999999886532110 00 112 222 2468899999
Q ss_pred EcCCHHH--HHHHHHHHHHhCCCC
Q 006034 484 MYTDKKR--TIEAVQRLRLAFPAI 505 (663)
Q Consensus 484 ~~~dd~~--n~~~~~~~r~~~~~~ 505 (663)
+.+.... ++........+.++.
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~ga 228 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGA 228 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCc
Confidence 9887654 333334444455553
No 267
>PLN02583 cinnamoyl-CoA reductase
Probab=92.25 E-value=0.43 Score=49.94 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=51.8
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH--H-HHHHh-----cCCCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--V-KESRK-----LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~--~-~~~~~-----~~~~vi~GD~~~~~~L~~ 472 (663)
..++++|.|. |.+|+.+++.|. ++|++|+++.++++. . +.+.+ .+..++.+|.+|++.+.+
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll----------~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~ 74 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLL----------SRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILD 74 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH----------hCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHH
Confidence 3457899986 899999999998 789999999875332 1 11221 246788999999998876
Q ss_pred cCCCCCcEEEE
Q 006034 473 AGITSPKAVMI 483 (663)
Q Consensus 473 a~i~~a~~vv~ 483 (663)
+ +.+++.++-
T Consensus 75 ~-l~~~d~v~~ 84 (297)
T PLN02583 75 A-LKGCSGLFC 84 (297)
T ss_pred H-HcCCCEEEE
Confidence 4 446777763
No 268
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.25 E-value=1.2 Score=47.06 Aligned_cols=139 Identities=18% Similarity=0.196 Sum_probs=83.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHhc----CCCEEEecCCCHHHHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRKL----GFPILYGDASRPAVLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~~----~~~vi~GD~~~~~~L~~a 473 (663)
.+.+|.|+|.|++|..++..|.. .....+++++|.+++.++- +.+. ...-+++. +|.+
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~--------~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~-~dy~----- 67 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILA--------KGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD-KDYS----- 67 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--------cCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC-CCHH-----
Confidence 35589999999999999998852 1344579999998876432 2221 11233321 2332
Q ss_pred CCCCCcEEEEEcCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhHH--HH-HHcCCC--eEEcC-c
Q 006034 474 GITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGAT--DAILE-N 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~d---------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Gad--~vi~p-~ 532 (663)
.+++||.+|++.+. | +.|..+ +..+++.+|+.. +..+.||.+.- .+ +..|.+ +|+-- .
T Consensus 68 ~~~~adivvitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~-vivvsNP~d~~t~~~~k~sg~p~~~viG~gt 146 (312)
T cd05293 68 VTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAI-LLVVSNPVDIMTYVAWKLSGLPKHRVIGSGC 146 (312)
T ss_pred HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcE-EEEccChHHHHHHHHHHHhCCCHHHEEecCc
Confidence 25788988875442 2 345543 345666778844 55555665432 22 333543 66655 4
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
.+-..++-+.+-+.+++++..++
T Consensus 147 ~Ld~~R~~~~la~~l~v~~~~v~ 169 (312)
T cd05293 147 NLDSARFRYLIAERLGVAPSSVH 169 (312)
T ss_pred hHHHHHHHHHHHHHhCCChhhEE
Confidence 55555677777777777775544
No 269
>PRK07825 short chain dehydrogenase; Provisional
Probab=92.24 E-value=0.31 Score=50.10 Aligned_cols=72 Identities=21% Similarity=0.146 Sum_probs=54.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-c-CCCEEEecCCCHHHHHhc------C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-L-GFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~-~~~vi~GD~~~~~~L~~a------~ 474 (663)
+.++|.|. |.+|+.+++.|. ++|++|++.++|+++.+...+ . ...++.+|.+|++.++++ .
T Consensus 6 ~~ilVtGasggiG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 6 KVVAITGGARGIGLATARALA----------ALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHH
Confidence 46888886 889999999997 789999999999998776654 2 377889999999875431 1
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
....|.+|...
T Consensus 76 ~~~id~li~~a 86 (273)
T PRK07825 76 LGPIDVLVNNA 86 (273)
T ss_pred cCCCCEEEECC
Confidence 24567666543
No 270
>PRK08339 short chain dehydrogenase; Provisional
Probab=92.24 E-value=0.3 Score=50.09 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=52.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|. +.+|+.+++.|. ++|++|++.++|++..+...+ ....++.+|.+|++-.+++
T Consensus 9 k~~lItGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLA----------RAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVK 78 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 46788887 679999999998 789999999999887655443 1356789999999866543
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
.....|.+|...
T Consensus 79 ~~~~~g~iD~lv~na 93 (263)
T PRK08339 79 ELKNIGEPDIFFFST 93 (263)
T ss_pred HHHhhCCCcEEEECC
Confidence 123467666544
No 271
>PRK06138 short chain dehydrogenase; Provisional
Probab=92.23 E-value=0.24 Score=49.98 Aligned_cols=73 Identities=12% Similarity=0.102 Sum_probs=55.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~~L~~a---- 473 (663)
++++|.|. |.+|+.+++.|. +.|++|++++++++..+...+. ...++.+|.+|++.++++
T Consensus 6 k~~lItG~sg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFA----------REGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHH----------HCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 46888876 899999999997 7899999999998876554432 357789999999877653
Q ss_pred --CCCCCcEEEEEcC
Q 006034 474 --GITSPKAVMIMYT 486 (663)
Q Consensus 474 --~i~~a~~vv~~~~ 486 (663)
...+.|.++-+..
T Consensus 76 ~~~~~~id~vi~~ag 90 (252)
T PRK06138 76 AARWGRLDVLVNNAG 90 (252)
T ss_pred HHHcCCCCEEEECCC
Confidence 2246787766554
No 272
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.22 E-value=1.6 Score=44.25 Aligned_cols=89 Identities=9% Similarity=0.140 Sum_probs=54.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC---CC-EEEEeC-ChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG---WP-FVAFDL-NPSVVKESRK-LGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~---~~-vvvid~-d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
.++.|+|.|++|..+++.|. +.+ .+ +++.++ ++++.+.+.+ .+..+ .. +.++.+ ++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~-----~~ 66 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLL----------KTSKEYIEEIIVSNRSNVEKLDQLQARYNVST-TT--DWKQHV-----TS 66 (245)
T ss_pred CeEEEECcCHHHHHHHHHHH----------hCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE-eC--ChHHHH-----hc
Confidence 46999999999999999986 332 33 666775 5778877765 34322 11 122333 57
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
+|.|++++.++...- ++...+...++ +++..+.
T Consensus 67 ~DiViiavp~~~~~~-v~~~l~~~~~~-~~vis~~ 99 (245)
T PRK07634 67 VDTIVLAMPPSAHEE-LLAELSPLLSN-QLVVTVA 99 (245)
T ss_pred CCEEEEecCHHHHHH-HHHHHHhhccC-CEEEEEC
Confidence 899999999865432 33333433233 4444443
No 273
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=92.18 E-value=18 Score=38.46 Aligned_cols=138 Identities=13% Similarity=0.077 Sum_probs=69.7
Q ss_pred cccCchhHHHHHHHHHHhccC--CCcCCch-----hHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 006034 4 RILCRSQILGFFFAGIVLNQL--GIIRNLT-----DVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 76 (663)
Q Consensus 4 ~rl~lP~ivg~ilaGillGp~--glv~~~~-----~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~ 76 (663)
+|+-...++..++.|+++|.+ +.....+ .+..-..+.++++||..|++++++++++..|+...... +.+..+
T Consensus 5 ~~~~~~~~~~~~i~~~~~g~~~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~-~~~~qf 83 (328)
T TIGR00832 5 ERYLTLWIFLAIAAGVGLGVLFPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLIL-SLFINW 83 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHH-HHHHHH
Confidence 344344455666667777742 1110011 11112334667899999999999999987766443322 233333
Q ss_pred HHHHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHH
Q 006034 77 LAFTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDI 156 (663)
Q Consensus 77 ~~~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di 156 (663)
+..-.+ +.++...+++ ....+.+|..+..+.|......+-. ++.+.+.. +.++...++-+
T Consensus 84 vi~Pll--------a~~l~~l~~~----------~~p~l~~GliLv~~~Pgg~~S~v~T-~lAkGnva-lsv~lt~~stL 143 (328)
T TIGR00832 84 IIGPFL--------MFLLAWLFLR----------DLFEYIAGLILLGLARCIAMVFVWN-QLAKGDPE-YTLVLVAVNSL 143 (328)
T ss_pred HHHHHH--------HHHHHHHHcC----------CCHHHHHHHHHHHhcchHHHHHHHH-HHcCCCHH-HHHHHHHHHHH
Confidence 333222 1111222333 2234677776666555555443322 12233332 45555567777
Q ss_pred HHHHHH
Q 006034 157 AVVPLL 162 (663)
Q Consensus 157 ~~i~~l 162 (663)
.++++.
T Consensus 144 l~~~~~ 149 (328)
T TIGR00832 144 FQVFLY 149 (328)
T ss_pred HHHHHH
Confidence 665555
No 274
>PRK08643 acetoin reductase; Validated
Probab=92.17 E-value=0.29 Score=49.74 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=53.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+ .....+.+|.+|++.++++
T Consensus 3 k~~lItGas~giG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLV----------EDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQ 72 (256)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 46777775 789999999998 789999999999877655433 2345688999999866442
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|.+.
T Consensus 73 ~~~~~~~id~vi~~a 87 (256)
T PRK08643 73 VVDTFGDLNVVVNNA 87 (256)
T ss_pred HHHHcCCCCEEEECC
Confidence 224567776654
No 275
>PRK03818 putative transporter; Validated
Probab=92.14 E-value=2 Score=49.09 Aligned_cols=66 Identities=20% Similarity=0.530 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcc----CCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 006034 11 ILGFFFAGIVLNQ----LGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 76 (663)
Q Consensus 11 ivg~ilaGillGp----~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~ 76 (663)
+.|-+++|+++|. +|..-+....+++.++|+.+++|.+|++.-++.+...++..+...+.+++++.
T Consensus 33 ~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~ 102 (552)
T PRK03818 33 IGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVI 102 (552)
T ss_pred cHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3789999999998 56544556777899999999999999999998776666554544444444443
No 276
>PRK07831 short chain dehydrogenase; Provisional
Probab=92.14 E-value=0.31 Score=49.79 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=53.5
Q ss_pred CCcEEEEcC-C-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHh
Q 006034 403 SEPVVIVGF-G-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~-g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~ 472 (663)
.+.++|.|. | .+|+.+++.|. ++|++|+++|+++++.+...+ .....+.+|.+|++..++
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~----------~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 86 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRAL----------EEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDA 86 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHH
Confidence 467899997 5 59999999997 789999999998877654432 135578899999876543
Q ss_pred c------CCCCCcEEEEEcC
Q 006034 473 A------GITSPKAVMIMYT 486 (663)
Q Consensus 473 a------~i~~a~~vv~~~~ 486 (663)
+ ...+.|.+|-..+
T Consensus 87 ~~~~~~~~~g~id~li~~ag 106 (262)
T PRK07831 87 LIDAAVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHHHHHcCCCCEEEECCC
Confidence 2 1235677666554
No 277
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.13 E-value=0.3 Score=49.26 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=54.3
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHh---
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLS--- 472 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~--- 472 (663)
.++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ . ....+..|.+|++.+++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~----------~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLA----------QKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFA 74 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 357899997 999999999997 788999999999877554432 2 24568899999876543
Q ss_pred ---cCCCCCcEEEEEcC
Q 006034 473 ---AGITSPKAVMIMYT 486 (663)
Q Consensus 473 ---a~i~~a~~vv~~~~ 486 (663)
......|.+|-..+
T Consensus 75 ~~~~~~~~id~vi~~ag 91 (253)
T PRK08217 75 QIAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 12245687776543
No 278
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.13 E-value=11 Score=35.58 Aligned_cols=114 Identities=22% Similarity=0.290 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhCCc--HHHHHHHhhhhccCCc-hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhh---hHHHHHHH
Q 006034 225 TVAGTSLLTQKLGFS--DTLGAFLAGAILAETN-FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR---EWPNVLAL 298 (663)
Q Consensus 225 ~~~~~~~l~~~~G~s--~~lgAflaGl~l~~~~-~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~---~~~~~l~~ 298 (663)
+....+++.+.+|++ ..+|+++++.++.-.. ...+..+.. ..+..-+.=..+|.+++...+.+ .+...+..
T Consensus 6 ~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~---~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~~ 82 (156)
T TIGR03082 6 VGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWL---LALAQVVIGILIGSRFTREVLAELKRLWPAALLS 82 (156)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHH---HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 334455677888887 6788888888777432 111111111 22233333467889998877643 34445555
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHH
Q 006034 299 LAGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSL 344 (663)
Q Consensus 299 ~~~~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~ 344 (663)
.+..+..-.+..++..++.++++.+++. + ..|.|.-++.....
T Consensus 83 ~~~~l~~~~~~~~~l~~~~~~~~~ta~L-a--~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 83 TVLLLALSALLAWLLARLTGVDPLTAFL-A--TSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHH-H--hCCchHHHHHHHHH
Confidence 5566666777788888899999998863 3 57888877776554
No 279
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.12 E-value=1.4 Score=40.84 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=60.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH----Hh----cCCCEEEecCCCHHHHHhcCC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RK----LGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~----~~----~~~~vi~GD~~~~~~L~~a~i 475 (663)
+|.|+|. |++|+.++..|.. .....+++++|.++++.+-. .+ ...+..... .+.+. +
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~--------~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~-----~ 67 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQ--------QGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEA-----L 67 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHH--------TTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGG-----G
T ss_pred EEEEECCCChHHHHHHHHHHh--------CCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccc-----c
Confidence 6899999 9999999999863 23455799999998764332 22 223333333 44433 4
Q ss_pred CCCcEEEEEcCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhh
Q 006034 476 TSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMH 516 (663)
Q Consensus 476 ~~a~~vv~~~~dd-----------~~n~~----~~~~~r~~~~~~~iia~~~~~~~ 516 (663)
++||.+|++.+.. +.|.. ++...++.+|+. ++..+.||-+
T Consensus 68 ~~aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~-~vivvtNPvd 122 (141)
T PF00056_consen 68 KDADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDA-IVIVVTNPVD 122 (141)
T ss_dssp TTESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTS-EEEE-SSSHH
T ss_pred ccccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCcc-EEEEeCCcHH
Confidence 6889787776541 34444 334456667774 4555566544
No 280
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=92.11 E-value=0.27 Score=47.06 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=56.9
Q ss_pred EEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEcC
Q 006034 407 VIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMYT 486 (663)
Q Consensus 407 iI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~ 486 (663)
||+--|+.|..++++.. ++|++|+.|-+|+.+.... ++..++++|..|++-+ ...+..-|+||.+.+
T Consensus 5 iIgAsG~~Gs~i~~EA~----------~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~-a~~l~g~DaVIsA~~ 71 (211)
T COG2910 5 IIGASGKAGSRILKEAL----------KRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSL-ASDLAGHDAVISAFG 71 (211)
T ss_pred EEecCchhHHHHHHHHH----------hCCCeeEEEEeChHhcccc--ccceeecccccChhhh-HhhhcCCceEEEecc
Confidence 44446999999999997 8999999999999987543 5788999999999998 457888899988765
Q ss_pred C
Q 006034 487 D 487 (663)
Q Consensus 487 d 487 (663)
-
T Consensus 72 ~ 72 (211)
T COG2910 72 A 72 (211)
T ss_pred C
Confidence 3
No 281
>PRK06179 short chain dehydrogenase; Provisional
Probab=92.10 E-value=0.22 Score=51.04 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=54.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc------CCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i~ 476 (663)
+.++|.|. |.+|+.++++|. ++|++|+++++|++..+.. .+..++.+|.+|++.++++ ...
T Consensus 5 ~~vlVtGasg~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g 72 (270)
T PRK06179 5 KVALVTGASSGIGRATAEKLA----------RAGYRVFGTSRNPARAAPI--PGVELLELDVTDDASVQAAVDEVIARAG 72 (270)
T ss_pred CEEEEecCCCHHHHHHHHHHH----------HCCCEEEEEeCChhhcccc--CCCeeEEeecCCHHHHHHHHHHHHHhCC
Confidence 46888875 889999999998 7899999999998765432 4678899999999877653 123
Q ss_pred CCcEEEEEcC
Q 006034 477 SPKAVMIMYT 486 (663)
Q Consensus 477 ~a~~vv~~~~ 486 (663)
+.|.+|.+.+
T Consensus 73 ~~d~li~~ag 82 (270)
T PRK06179 73 RIDVLVNNAG 82 (270)
T ss_pred CCCEEEECCC
Confidence 5677766554
No 282
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.06 E-value=1.7 Score=46.13 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCChHHHHHH----Hhc----CCCEEEecCCCHHHHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNPSVVKES----RKL----GFPILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~~~~~~~----~~~----~~~vi~GD~~~~~~L~ 471 (663)
...+|.|+|.|++|..++-.|. ..+. +++++|.|+++++-. .+. ....+.+ .+.+
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~----------~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~~~--- 69 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALV----------NQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GDYS--- 69 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CCHH---
Confidence 3458999999999999999886 4454 799999988874332 221 1112232 2322
Q ss_pred hcCCCCCcEEEEEcCC---------H--HHHHHH----HHHHHHhCCCCcEEEEecChhhHH--HH-HHcCCC--eEEcC
Q 006034 472 SAGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGAT--DAILE 531 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~d---------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Gad--~vi~p 531 (663)
..++||.+|++.+. | ..|..+ +..+++.+|+..+ ..+.||.+.- .+ +..|.+ +|+--
T Consensus 70 --~~~~adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~v-ivvsNP~d~~~~~~~k~sg~p~~~viG~ 146 (315)
T PRK00066 70 --DCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIF-LVASNPVDILTYATWKLSGFPKERVIGS 146 (315)
T ss_pred --HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEE-EEccCcHHHHHHHHHHHhCCCHHHEeec
Confidence 25799988886653 2 345554 4456667788554 4455655432 22 233332 34332
Q ss_pred -chHHHHHHHHHHHHhcCCCHHHHH
Q 006034 532 -NAETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 532 -~~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
...-..++-+.+-+.+++++..++
T Consensus 147 gt~LDs~R~~~~la~~l~v~~~~V~ 171 (315)
T PRK00066 147 GTSLDSARFRYMLSEKLDVDPRSVH 171 (315)
T ss_pred CchHHHHHHHHHHHHHhCCCcccEE
Confidence 233344555556566677665443
No 283
>PRK05866 short chain dehydrogenase; Provisional
Probab=92.04 E-value=0.32 Score=50.89 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=54.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++++.+.+.+ . ...++.+|.+|++.++++
T Consensus 41 k~vlItGasggIG~~la~~La----------~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~ 110 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFA----------RRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVAD 110 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 56888886 999999999997 789999999999987665543 1 245788999998865442
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-+.
T Consensus 111 ~~~~~g~id~li~~A 125 (293)
T PRK05866 111 VEKRIGGVDILINNA 125 (293)
T ss_pred HHHHcCCCCEEEECC
Confidence 234678777654
No 284
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.04 E-value=1.9 Score=48.32 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=53.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCC--CCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHh----------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTV--GWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLS---------- 472 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~--~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~---------- 472 (663)
+|.|+|.|.+|..+|-.|. +. |++|+.+|.|+++++.+.+.+.+.. +..-++.+++
T Consensus 3 ~I~ViG~GyvGl~~A~~lA----------~~g~g~~V~gvD~~~~~v~~l~~g~~~~~--e~gl~ell~~~~~~~l~~t~ 70 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIA----------LKCPDIEVVVVDISVPRIDAWNSDQLPIY--EPGLDEVVKQCRGKNLFFST 70 (473)
T ss_pred EEEEECCCHHHHHHHHHHH----------hcCCCCeEEEEECCHHHHHHHHcCCCccC--CCCHHHHHHHhhcCCEEEEc
Confidence 4899999999999999997 44 6889999999999999987655442 4444555433
Q ss_pred ---cCCCCCcEEEEEcC
Q 006034 473 ---AGITSPKAVMIMYT 486 (663)
Q Consensus 473 ---a~i~~a~~vv~~~~ 486 (663)
..+++||.++++.+
T Consensus 71 ~~~~~i~~advi~I~V~ 87 (473)
T PLN02353 71 DVEKHVAEADIVFVSVN 87 (473)
T ss_pred CHHHHHhcCCEEEEEeC
Confidence 13567999888764
No 285
>PRK06483 dihydromonapterin reductase; Provisional
Probab=92.01 E-value=0.37 Score=48.25 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=53.8
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHhcCCCEEEecCCCHHHHHhc------C
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~~~~~vi~GD~~~~~~L~~a------~ 474 (663)
.++++|.|. +.+|+.+++.|. ++|++|++++++++. .+.+.+.+..++.+|.+|++.++++ .
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 71 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLL----------AQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQH 71 (236)
T ss_pred CceEEEECCCChHHHHHHHHHH----------HCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence 356888886 679999999997 789999999998764 3444556678889999998876542 1
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
..+.|.+|-..
T Consensus 72 ~~~id~lv~~a 82 (236)
T PRK06483 72 TDGLRAIIHNA 82 (236)
T ss_pred CCCccEEEECC
Confidence 23466666544
No 286
>PRK07574 formate dehydrogenase; Provisional
Probab=91.99 E-value=0.46 Score=51.66 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=56.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|++|+.+++.|. ..|.+|.+.|+++...+...+.+.. . ..+ ++++ ++++|.|+
T Consensus 192 gktVGIvG~G~IG~~vA~~l~----------~fG~~V~~~dr~~~~~~~~~~~g~~--~--~~~---l~el-l~~aDvV~ 253 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLK----------PFDVKLHYTDRHRLPEEVEQELGLT--Y--HVS---FDSL-VSVCDVVT 253 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCchhhHhhcCce--e--cCC---HHHH-hhcCCEEE
Confidence 357999999999999999997 7899999999876433322222321 1 112 2222 46889998
Q ss_pred EEcCCHHH--HHHHHHHHHHhCCCCcEE
Q 006034 483 IMYTDKKR--TIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 483 ~~~~dd~~--n~~~~~~~r~~~~~~~ii 508 (663)
+..+..++ ++.-......+.+...+|
T Consensus 254 l~lPlt~~T~~li~~~~l~~mk~ga~lI 281 (385)
T PRK07574 254 IHCPLHPETEHLFDADVLSRMKRGSYLV 281 (385)
T ss_pred EcCCCCHHHHHHhCHHHHhcCCCCcEEE
Confidence 88887654 333344455555554333
No 287
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.99 E-value=0.25 Score=54.20 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=84.5
Q ss_pred cCCCCcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH--HHHH-Hhc--CCCEEEecCCCHHHHH
Q 006034 400 YEGSEPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKES-RKL--GFPILYGDASRPAVLL 471 (663)
Q Consensus 400 ~~~~~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~--~~~~-~~~--~~~vi~GD~~~~~~L~ 471 (663)
+..++|+++||. ..+...+-+.|.+ +|+.-+.+|+...+-+.. .+-+ .+. .....+|...|+.-|.
T Consensus 354 ehgkkhivvcghityesvshflkdflhe------drddvdvevvflhr~~pdleleglfkrhft~veffqgtvmnp~dl~ 427 (1103)
T KOG1420|consen 354 EHGKKHIVVCGHITYESVSHFLKDFLHE------DRDDVDVEVVFLHRISPDLELEGLFKRHFTQVEFFQGTVMNPHDLA 427 (1103)
T ss_pred hcCCeeEEEecceeHHHHHHHHHHHhhc------cccccceEEEEEecCCCCcchHHHHhhheeeEEEecccccChhhhh
Confidence 467899999996 3344445555542 122334445555442222 2222 222 2567889999999999
Q ss_pred hcCCCCCcEEEEEcCC--------HHHHHHHHHHHHHhCCCCcEEEEecChhhHHHHH-------HcCCCeEEcCchHHH
Q 006034 472 SAGITSPKAVMIMYTD--------KKRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLK-------KAGATDAILENAETS 536 (663)
Q Consensus 472 ~a~i~~a~~vv~~~~d--------d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~-------~~Gad~vi~p~~~~~ 536 (663)
+..+++||+.++..+. |..|++-+...|...|++++|...-+-.+...+. +-| |.||+-.+.-=
T Consensus 428 rvki~~adaclvlankyc~dpdaedaanimrvisiknys~dirvi~qlmqyhnkayllnipswdwk~g-ddviclaelkl 506 (1103)
T KOG1420|consen 428 RVKIESADACLVLANKYCADPDAEDAANIMRVISIKNYSPDIRVITQLMQYHNKAYLLNIPSWDWKEG-DDVICLAELKL 506 (1103)
T ss_pred heeccccceeeeecccccCCCChhhhhhheEEEEeccCCCchhHHHHHHHhhchheeecCCCcccccC-CceEEehhhhh
Confidence 9999999998877652 5678887778888888888877555444444432 234 44555543322
Q ss_pred HHHHHHHHH
Q 006034 537 LQLGSKLLK 545 (663)
Q Consensus 537 ~~la~~~~~ 545 (663)
--+|...+.
T Consensus 507 gfiaqscla 515 (1103)
T KOG1420|consen 507 GFIAQSCLA 515 (1103)
T ss_pred hhhHHHhhc
Confidence 234444444
No 288
>PRK07890 short chain dehydrogenase; Provisional
Probab=91.99 E-value=0.34 Score=49.14 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=55.2
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+ .....+..|.+|++.++++
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAA----------RAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVA 74 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHH
Confidence 356888886 899999999998 789999999999987665543 2356789999998876431
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 75 ~~~~~~g~~d~vi~~a 90 (258)
T PRK07890 75 LALERFGRVDALVNNA 90 (258)
T ss_pred HHHHHcCCccEEEECC
Confidence 234678776655
No 289
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=91.97 E-value=0.38 Score=49.11 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=54.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. +-+|+.+++.|. ++|++|+++++++++.+.+.+. ...++.+|.+|++..+++
T Consensus 7 k~vlVtGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFL----------AEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVD 76 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHH
Confidence 56888887 679999999998 7899999999999888776542 356789999998866543
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~g~id~li~~a 88 (263)
T PRK06200 77 AFGKLDCFVGNA 88 (263)
T ss_pred hcCCCCEEEECC
Confidence 223567665443
No 290
>PRK06172 short chain dehydrogenase; Provisional
Probab=91.96 E-value=0.32 Score=49.25 Aligned_cols=72 Identities=14% Similarity=0.060 Sum_probs=52.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |.+|+.+++.|. +.|++|+++++++++.+...+ . ....+.+|.+|++.++++
T Consensus 8 k~ilItGas~~iG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFA----------REGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 57888876 799999999997 789999999999887654432 2 356788999998866542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 78 ~~~~~g~id~li~~a 92 (253)
T PRK06172 78 TIAAYGRLDYAFNNA 92 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 113457666543
No 291
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=91.95 E-value=0.32 Score=51.62 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=52.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
++++|.|. |-+|+.+++.|. +.| ++|+++++++...+.+.+ .+..++.||.+|++.++++ ++
T Consensus 5 k~vLVTGatG~IG~~l~~~L~----------~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~-~~ 73 (324)
T TIGR03589 5 KSILITGGTGSFGKAFISRLL----------ENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA-LR 73 (324)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH-Hh
Confidence 46888886 899999999997 443 789999988765443322 2467889999999998765 45
Q ss_pred CCcEEEEEc
Q 006034 477 SPKAVMIMY 485 (663)
Q Consensus 477 ~a~~vv~~~ 485 (663)
+.|.++-+.
T Consensus 74 ~iD~Vih~A 82 (324)
T TIGR03589 74 GVDYVVHAA 82 (324)
T ss_pred cCCEEEECc
Confidence 678777543
No 292
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.93 E-value=0.96 Score=47.73 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=30.8
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS 447 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~ 447 (663)
.+|.|+|.|++|..+++.|. +.|++|.+.+++++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~----------~~G~~V~~~~r~~~ 38 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLAS----------ANGHRVRVWSRRSG 38 (308)
T ss_pred CEEEEECccHHHHHHHHHHH----------HCCCEEEEEeCCCC
Confidence 46999999999999999998 78999999998864
No 293
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=91.90 E-value=0.52 Score=42.56 Aligned_cols=102 Identities=22% Similarity=0.299 Sum_probs=55.5
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChH-HH----HHHH---hcCCCEEEecCCCHHHHHhcC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPS-VV----KESR---KLGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~-~~----~~~~---~~~~~vi~GD~~~~~~L~~a~ 474 (663)
+|+|+|+ |++|+.+++.+.+ .++.+ +-++|++++ .. ..+. ..+..+. .|.+-+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~---------~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~----~~l~~~---- 64 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILE---------SPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT----DDLEEL---- 64 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHH---------STTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB----S-HHHH----
T ss_pred EEEEECCCCHHHHHHHHHHHh---------cCCcEEEEEEecCCcccccchhhhhhCcCCcccccc----hhHHHh----
Confidence 5899999 9999999999983 57887 556677772 11 1111 1222222 222222
Q ss_pred CCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEe--cChhhHHHHHHcCCC
Q 006034 475 ITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA--QDMMHLLDLKKAGAT 526 (663)
Q Consensus 475 i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~--~~~~~~~~l~~~Gad 526 (663)
++++|++|=.| ..+.-......+.+.+ ++++.-. -+++..+.++++...
T Consensus 65 ~~~~DVvIDfT-~p~~~~~~~~~~~~~g--~~~ViGTTG~~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 65 LEEADVVIDFT-NPDAVYDNLEYALKHG--VPLVIGTTGFSDEQIDELEELAKK 115 (124)
T ss_dssp TTH-SEEEEES--HHHHHHHHHHHHHHT---EEEEE-SSSHHHHHHHHHHHTTT
T ss_pred cccCCEEEEcC-ChHHhHHHHHHHHhCC--CCEEEECCCCCHHHHHHHHHHhcc
Confidence 22388666665 4444445555666664 3444433 245666777765433
No 294
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.85 E-value=10 Score=42.82 Aligned_cols=74 Identities=22% Similarity=0.314 Sum_probs=52.5
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..+.+++|+|.|.-|..+++.+++ +....+|-.+|.|++....-- .|.+|+-... =+++.++-+++ -
T Consensus 114 ~~~~r~lIiGAG~ag~~l~r~~~~--------~~~~~pV~fiDdd~~~~g~~i-~Gv~V~g~~~-i~~~v~~~~~~---~ 180 (588)
T COG1086 114 DNRIRLLIIGAGSAGDLLLRALRR--------DPEYTPVAFLDDDPDLTGMKI-RGVPVLGRIE-IERVVEELGIQ---L 180 (588)
T ss_pred cCCCceEEEcCchHHHHHHHHHHh--------CCCcceEEEECCChhhcCCEE-eceeeechhH-HHHHHHHcCCc---e
Confidence 356789999999999999999973 334667888899986543111 3666666655 67777877766 4
Q ss_pred EEEEcCC
Q 006034 481 VMIMYTD 487 (663)
Q Consensus 481 vv~~~~d 487 (663)
++++.++
T Consensus 181 iiiAips 187 (588)
T COG1086 181 ILIAIPS 187 (588)
T ss_pred EEEecCC
Confidence 5566655
No 295
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.83 E-value=0.31 Score=49.49 Aligned_cols=72 Identities=11% Similarity=0.044 Sum_probs=54.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++.++++++.+...+ . ....+.+|.+|++..+++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYV----------EAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQ 79 (253)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 56888887 789999999998 789999999999987766543 1 345678999999876553
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 80 ~~~~~g~id~lv~~a 94 (253)
T PRK05867 80 VTAELGGIDIAVCNA 94 (253)
T ss_pred HHHHhCCCCEEEECC
Confidence 123667776543
No 296
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.81 E-value=0.3 Score=49.03 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=53.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChHHHHHHHh------cCCCEEEecCCCHHHHHhcC-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK------LGFPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a~- 474 (663)
++++|.|. |.+|+.+++.|. +.|++++++ +++++..+.+.+ ....++.+|.+|++.++++=
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~----------~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLA----------KEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHH----------HCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 47888886 899999999997 779999999 998887655433 13567889999998775531
Q ss_pred -----CCCCcEEEEEc
Q 006034 475 -----ITSPKAVMIMY 485 (663)
Q Consensus 475 -----i~~a~~vv~~~ 485 (663)
....|.+|...
T Consensus 76 ~~~~~~~~id~vi~~a 91 (247)
T PRK05565 76 QIVEKFGKIDILVNNA 91 (247)
T ss_pred HHHHHhCCCCEEEECC
Confidence 12567776544
No 297
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.80 E-value=0.18 Score=48.80 Aligned_cols=39 Identities=28% Similarity=0.647 Sum_probs=32.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 453 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~ 453 (663)
+|.|+|.|.+|+.+|..+. ..|++|+++|.|++..+...
T Consensus 1 ~V~ViGaG~mG~~iA~~~a----------~~G~~V~l~d~~~~~l~~~~ 39 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFA----------RAGYEVTLYDRSPEALERAR 39 (180)
T ss_dssp EEEEES-SHHHHHHHHHHH----------HTTSEEEEE-SSHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHH----------hCCCcEEEEECChHHHHhhh
Confidence 4789999999999999997 78999999999999865544
No 298
>PRK08309 short chain dehydrogenase; Provisional
Probab=91.75 E-value=0.4 Score=46.28 Aligned_cols=87 Identities=10% Similarity=-0.033 Sum_probs=59.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a------ 473 (663)
+++|.|...+|..+++.|. +.|++|.+.++++++.+.+.. .....+.+|.+|++.++++
T Consensus 2 ~vlVtGGtG~gg~la~~L~----------~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~ 71 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLC----------EKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIE 71 (177)
T ss_pred EEEEECcCHHHHHHHHHHH----------HCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5889998788888999997 789999999999988766543 2345667899988766542
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
.....|.++.....+- .-.++..+++.+
T Consensus 72 ~~g~id~lv~~vh~~~-~~~~~~~~~~~g 99 (177)
T PRK08309 72 KNGPFDLAVAWIHSSA-KDALSVVCRELD 99 (177)
T ss_pred HcCCCeEEEEeccccc-hhhHHHHHHHHc
Confidence 1234566666666542 223344555554
No 299
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=91.73 E-value=0.33 Score=52.07 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=51.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH----HHHHHh-------cCCCEEEecCCCHHHHH
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRK-------LGFPILYGDASRPAVLL 471 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~----~~~~~~-------~~~~vi~GD~~~~~~L~ 471 (663)
++++|.|. |-+|+.+++.|. ++|++|+++|+.++. .+...+ .....+.||.+|.+-+.
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~----------~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~ 85 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELL----------FLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQ 85 (348)
T ss_pred CEEEEECCccHHHHHHHHHHH----------HCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHH
Confidence 47999996 999999999998 678999999985432 111111 23567899999988776
Q ss_pred hcCCCCCcEEEEEc
Q 006034 472 SAGITSPKAVMIMY 485 (663)
Q Consensus 472 ~a~i~~a~~vv~~~ 485 (663)
++ ++++|.||=+.
T Consensus 86 ~~-~~~~d~ViHlA 98 (348)
T PRK15181 86 KA-CKNVDYVLHQA 98 (348)
T ss_pred HH-hhCCCEEEECc
Confidence 54 34678766543
No 300
>PRK06196 oxidoreductase; Provisional
Probab=91.73 E-value=0.38 Score=50.79 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=55.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--cCCCEEEecCCCHHHHHhc------C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--LGFPILYGDASRPAVLLSA------G 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--~~~~vi~GD~~~~~~L~~a------~ 474 (663)
+.++|.|. |-+|+.+++.|. +.|++|+++++++++.+...+ .+..++.+|.+|++..+++ .
T Consensus 27 k~vlITGasggIG~~~a~~L~----------~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALA----------QAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 56888887 789999999997 789999999999988766543 2478899999999876542 1
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
..+.|.+|...
T Consensus 97 ~~~iD~li~nA 107 (315)
T PRK06196 97 GRRIDILINNA 107 (315)
T ss_pred CCCCCEEEECC
Confidence 24678776644
No 301
>PRK07814 short chain dehydrogenase; Provisional
Probab=91.72 E-value=0.37 Score=49.25 Aligned_cols=71 Identities=15% Similarity=0.182 Sum_probs=53.3
Q ss_pred CcEEEEcCC-cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGFG-QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~g-~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|.+ -+|+.+++.|. ++|++|++++++++..+.+.+ .+..++.+|.+|++.++++
T Consensus 11 ~~vlItGasggIG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFA----------EAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 467888764 69999999997 789999999999887655443 2356788999999977542
Q ss_pred ---CCCCCcEEEEE
Q 006034 474 ---GITSPKAVMIM 484 (663)
Q Consensus 474 ---~i~~a~~vv~~ 484 (663)
...+.|.++-.
T Consensus 81 ~~~~~~~id~vi~~ 94 (263)
T PRK07814 81 AVEAFGRLDIVVNN 94 (263)
T ss_pred HHHHcCCCCEEEEC
Confidence 22467877654
No 302
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.72 E-value=0.45 Score=53.48 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=61.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH-HhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES-RKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~-~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..+++.|+|.|..|+.+++.|. +.|.+|.+.|.++....++ .+.|..+..|+-. ++ +++++|.
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~----------~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~-~~-----~~~~~d~ 77 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLS----------ELGCDVVVADDNETARHKLIEVTGVADISTAEA-SD-----QLDSFSL 77 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHH----------HCCCEEEEECCChHHHHHHHHhcCcEEEeCCCc-hh-----HhcCCCE
Confidence 3457999999999999999997 7899999999877655443 4457777765322 22 2356787
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
||....=+..|- ....||+.+ ++++.+..
T Consensus 78 vV~Spgi~~~~p-~~~~a~~~g--i~v~~~~e 106 (473)
T PRK00141 78 VVTSPGWRPDSP-LLVDAQSQG--LEVIGDVE 106 (473)
T ss_pred EEeCCCCCCCCH-HHHHHHHCC--CceeeHHH
Confidence 766554444443 344566654 45555433
No 303
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.70 E-value=0.37 Score=48.23 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=55.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a---- 473 (663)
++++|.|. |.+|+.+++.|. +.|++|++.+++++..+.+.+ .+.+.+.+|.+|++.++++
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFAL----------KEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred cEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHH
Confidence 57888887 779999999997 789999999999988765532 1467789999998877542
Q ss_pred --CCCCCcEEEEEcC
Q 006034 474 --GITSPKAVMIMYT 486 (663)
Q Consensus 474 --~i~~a~~vv~~~~ 486 (663)
.....|.++....
T Consensus 76 ~~~~~~id~ii~~ag 90 (238)
T PRK05786 76 AKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHhCCCCEEEEcCC
Confidence 1234577766654
No 304
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.66 E-value=2.6 Score=44.83 Aligned_cols=136 Identities=16% Similarity=0.228 Sum_probs=80.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHH--HH---Hh---cCCC-EEEecCCCHHHHHh
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVK--ES---RK---LGFP-ILYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~--~~---~~---~~~~-vi~GD~~~~~~L~~ 472 (663)
+++|.|+|.|++|..++..+. ..+. +++++|.|++..+ .+ .. .+.. -+.+. +|.+
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la----------~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~-~d~~---- 70 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIV----------LKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT-NNYE---- 70 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC-CCHH----
Confidence 357999999999999999886 4553 7999999998542 11 11 1222 23321 2322
Q ss_pred cCCCCCcEEEEEcCC--------------H--HHHHH----HHHHHHHhCCCCcEEEEecChhh--HHHH-HHcCC--Ce
Q 006034 473 AGITSPKAVMIMYTD--------------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMH--LLDL-KKAGA--TD 527 (663)
Q Consensus 473 a~i~~a~~vv~~~~d--------------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~--~~~l-~~~Ga--d~ 527 (663)
.+++||.||.+.+. | ..|.. ++..+++.+|+. ++..+.||.+ ...+ +..|. ++
T Consensus 71 -~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a-~~iv~sNP~di~t~~~~~~sg~p~~r 148 (321)
T PTZ00082 71 -DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNA-FVIVITNPLDVMVKLLQEHSGLPKNK 148 (321)
T ss_pred -HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHHHHHHHHHhcCCChhh
Confidence 35799988875421 1 23443 445566667775 4555556654 2233 33343 35
Q ss_pred EEcCc-hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 528 AILEN-AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 528 vi~p~-~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
|+--- ..-+.++-+.+.+.+++++..++
T Consensus 149 viGlgt~lds~R~~~~la~~l~v~~~~v~ 177 (321)
T PTZ00082 149 VCGMAGVLDSSRLRTYIAEKLGVNPRDVH 177 (321)
T ss_pred EEEecCcccHHHHHHHHHHHhCCCcccce
Confidence 55443 33345666667677777775544
No 305
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=91.65 E-value=0.4 Score=48.94 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=53.5
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+.+.+. ....+.+|.+|++..+++
T Consensus 6 k~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFV----------AEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVA 75 (262)
T ss_pred cEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHH
Confidence 56788886 679999999998 7899999999999887776652 255788999998755432
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 76 ~~g~id~li~~A 87 (262)
T TIGR03325 76 AFGKIDCLIPNA 87 (262)
T ss_pred HhCCCCEEEECC
Confidence 123557666553
No 306
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=91.65 E-value=0.63 Score=48.58 Aligned_cols=71 Identities=14% Similarity=0.237 Sum_probs=50.1
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCCh-----HHHHHHHh-cCCCEEEecCCCHHHHHhcCC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNP-----SVVKESRK-LGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~-----~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i 475 (663)
+++|.|. |.+|+.+++.|. +.+ ++|+++|+.. +..+.+.+ .+..++.+|.+|++.++++ +
T Consensus 1 ~ilItGatG~iG~~l~~~l~----------~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~ 69 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYIL----------NEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRL-F 69 (317)
T ss_pred CEEEEcCCchHHHHHHHHHH----------HhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHH-H
Confidence 4788886 999999999997 444 7899888632 22222221 2567889999999988775 3
Q ss_pred C--CCcEEEEEcC
Q 006034 476 T--SPKAVMIMYT 486 (663)
Q Consensus 476 ~--~a~~vv~~~~ 486 (663)
+ ++|.||-+..
T Consensus 70 ~~~~~d~vi~~a~ 82 (317)
T TIGR01181 70 TEHQPDAVVHFAA 82 (317)
T ss_pred hhcCCCEEEEccc
Confidence 3 3788876663
No 307
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=91.62 E-value=0.29 Score=54.02 Aligned_cols=71 Identities=17% Similarity=0.181 Sum_probs=52.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|.|.+|+.+++.|. ..| .+++++++++++.+.+.+ .+...+. .+-+.+ .+.++|.
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~----------~~G~~~V~v~~rs~~ra~~la~~~g~~~i~-----~~~l~~-~l~~aDv 243 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLL----------RKGVGKILIANRTYERAEDLAKELGGEAVK-----FEDLEE-YLAEADI 243 (417)
T ss_pred CCEEEEECChHHHHHHHHHHH----------HCCCCEEEEEeCCHHHHHHHHHHcCCeEee-----HHHHHH-HHhhCCE
Confidence 468999999999999999997 567 789999999998776654 3333221 222332 3468999
Q ss_pred EEEEcCCHH
Q 006034 481 VMIMYTDKK 489 (663)
Q Consensus 481 vv~~~~dd~ 489 (663)
|+.+|+..+
T Consensus 244 Vi~aT~s~~ 252 (417)
T TIGR01035 244 VISSTGAPH 252 (417)
T ss_pred EEECCCCCC
Confidence 999987654
No 308
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=91.55 E-value=0.37 Score=48.98 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=53.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++..+...+ .+ ...+.+|.+|++-++++
T Consensus 8 ~~vlItGasg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELA----------RAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHH
Confidence 56888887 999999999997 789999999999976544432 23 45588999999977643
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-+.
T Consensus 78 ~~~~~~~~d~vi~~a 92 (262)
T PRK13394 78 VAERFGSVDILVSNA 92 (262)
T ss_pred HHHHcCCCCEEEECC
Confidence 123467766554
No 309
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=91.54 E-value=0.35 Score=51.70 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=50.2
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-----HHHHHH-------hcCCCEEEecCCCHHHHH
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-----VVKESR-------KLGFPILYGDASRPAVLL 471 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-----~~~~~~-------~~~~~vi~GD~~~~~~L~ 471 (663)
+++|.|. |-+|+.+++.|. +.|++|+++|++++ +.+.+. +.+..++.||.+|++.++
T Consensus 2 ~vlVTGatGfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~ 71 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLL----------EKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLR 71 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHH----------HCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHH
Confidence 6888886 899999999997 78999999998753 233222 124778999999998776
Q ss_pred hcCCC-CCcEEEEE
Q 006034 472 SAGIT-SPKAVMIM 484 (663)
Q Consensus 472 ~a~i~-~a~~vv~~ 484 (663)
++=-+ +.|.|+=+
T Consensus 72 ~~~~~~~~d~ViH~ 85 (343)
T TIGR01472 72 RIIDEIKPTEIYNL 85 (343)
T ss_pred HHHHhCCCCEEEEC
Confidence 53211 35765533
No 310
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=91.50 E-value=1 Score=46.70 Aligned_cols=121 Identities=17% Similarity=0.130 Sum_probs=82.6
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
-.+.+|+|+|+|-+|..-|+... ..|.+|.++|.|.+|.+.+.+ .+.. ++=-.++++.+++ .+.+||
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~----------glgA~Vtild~n~~rl~~ldd~f~~r-v~~~~st~~~iee-~v~~aD 233 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI----------GLGADVTILDLNIDRLRQLDDLFGGR-VHTLYSTPSNIEE-AVKKAD 233 (371)
T ss_pred CCCccEEEECCccccchHHHHHh----------ccCCeeEEEecCHHHHhhhhHhhCce-eEEEEcCHHHHHH-Hhhhcc
Confidence 46778999999999999999886 789999999999999988887 2333 2223466777765 578899
Q ss_pred EEEEE---cCCHHHHHHHHHHHHHhCCCCcEEEEecCh-----------hhHHHHHHcCCCeEEcCch
Q 006034 480 AVMIM---YTDKKRTIEAVQRLRLAFPAIPIYARAQDM-----------MHLLDLKKAGATDAILENA 533 (663)
Q Consensus 480 ~vv~~---~~dd~~n~~~~~~~r~~~~~~~iia~~~~~-----------~~~~~l~~~Gad~vi~p~~ 533 (663)
.+|-+ .+.+.-.+..-.+.|++.|..-++=.+-|. ........-|+-+...|+.
T Consensus 234 lvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~~gvvhY~VaNm 301 (371)
T COG0686 234 LVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEVDGVVHYGVANM 301 (371)
T ss_pred EEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceeecCEEEEecCCC
Confidence 66533 344555666667799998874444333332 2223444556655555543
No 311
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.49 E-value=0.33 Score=48.90 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=52.6
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--C
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA--G 474 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a--~ 474 (663)
+++|.|. |.+|+.+++.|. +.|++|++++++++..+...+ ....++.+|.+|++-++++ .
T Consensus 3 ~vlItGas~giG~~~a~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 72 (243)
T PRK07102 3 KILIIGATSDIARACARRYA----------AAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDS 72 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHH----------hcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHH
Confidence 6788874 999999999998 789999999999987654432 2456789999998876542 1
Q ss_pred -CCCCcEEEEEc
Q 006034 475 -ITSPKAVMIMY 485 (663)
Q Consensus 475 -i~~a~~vv~~~ 485 (663)
.++.|.++...
T Consensus 73 ~~~~~d~vv~~a 84 (243)
T PRK07102 73 LPALPDIVLIAV 84 (243)
T ss_pred HhhcCCEEEECC
Confidence 12457777543
No 312
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.45 E-value=0.73 Score=48.54 Aligned_cols=135 Identities=20% Similarity=0.244 Sum_probs=78.2
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHH-h--cC-----CC-EEEecCCCHHHHHhc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESR-K--LG-----FP-ILYGDASRPAVLLSA 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~-~--~~-----~~-vi~GD~~~~~~L~~a 473 (663)
.+|.|+|.|.+|..++..+. ..+. +++++|.|+++.+... + +. .. -+.+ .+|. +
T Consensus 3 ~KI~VIGaG~vG~~ia~~la----------~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~-~~d~---~-- 66 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLA----------LKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG-TNDY---E-- 66 (307)
T ss_pred CEEEEECCCHHHHHHHHHHH----------hCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe-CCCH---H--
Confidence 37999999999999999996 4443 9999999998753322 1 11 11 1221 1222 2
Q ss_pred CCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HH-HHcCC--CeEEcC-c
Q 006034 474 GITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGA--TDAILE-N 532 (663)
Q Consensus 474 ~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Ga--d~vi~p-~ 532 (663)
.+.+||.+|++.+. | ..|.. ++..+++.+|+. ++..+.||.+.- .+ +..|. .+++-- .
T Consensus 67 ~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~-~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt 145 (307)
T PRK06223 67 DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDA-IVIVVTNPVDAMTYVALKESGFPKNRVIGMAG 145 (307)
T ss_pred HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHHHHHHHHHHhCCCcccEEEeCC
Confidence 25799988876421 1 24444 334455566773 444455554332 23 32343 355544 3
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHH
Q 006034 533 AETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
..-..++-+.+-+.+++++..++
T Consensus 146 ~lds~r~~~~la~~l~v~~~~v~ 168 (307)
T PRK06223 146 VLDSARFRTFIAEELNVSVKDVT 168 (307)
T ss_pred CcHHHHHHHHHHHHhCcChhhCc
Confidence 44455666667777777776554
No 313
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=91.43 E-value=0.37 Score=49.02 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=54.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ . ....+.+|.+|++.++++
T Consensus 13 k~ilItGa~g~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALG----------EAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEE 82 (259)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence 57888885 899999999997 789999999999887655442 1 345789999998877431
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
.....|.++-+.+
T Consensus 83 ~~~~~~~id~vi~~ag 98 (259)
T PRK08213 83 TLERFGHVDILVNNAG 98 (259)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1235677766653
No 314
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=91.40 E-value=0.59 Score=50.86 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=56.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
..++++++|+|.+|+-+++.|. +.| .++++..++.++++.+++ .+ |++..-+-|. ..+.++|
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~----------~~g~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~-~~l~~~D 240 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLA----------EKGVKKITIANRTLERAEELAKKLG-----AEAVALEELL-EALAEAD 240 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHH----------hCCCCEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHH-HhhhhCC
Confidence 3468999999999999999998 566 689999999999998886 44 4444333333 3578999
Q ss_pred EEEEEcCCHH
Q 006034 480 AVMIMYTDKK 489 (663)
Q Consensus 480 ~vv~~~~dd~ 489 (663)
.|+.+|+...
T Consensus 241 vVissTsa~~ 250 (414)
T COG0373 241 VVISSTSAPH 250 (414)
T ss_pred EEEEecCCCc
Confidence 9999998753
No 315
>PLN00203 glutamyl-tRNA reductase
Probab=91.38 E-value=0.32 Score=54.87 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=52.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhc--CCCEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL--GFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~--~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++++|+|.|.+|+.+++.|. ..|. +++++++++++++.+.+. +..+..-+..+ +. ..+.++|
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~----------~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~d---l~-~al~~aD 331 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLV----------SKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDE---ML-ACAAEAD 331 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHH----------hCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhh---HH-HHHhcCC
Confidence 467999999999999999997 6675 699999999999888763 33222222222 22 2357899
Q ss_pred EEEEEcCCH
Q 006034 480 AVMIMYTDK 488 (663)
Q Consensus 480 ~vv~~~~dd 488 (663)
.|+.+|+..
T Consensus 332 VVIsAT~s~ 340 (519)
T PLN00203 332 VVFTSTSSE 340 (519)
T ss_pred EEEEccCCC
Confidence 999998764
No 316
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.36 E-value=0.7 Score=48.81 Aligned_cols=134 Identities=20% Similarity=0.194 Sum_probs=79.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHH-HHh--cCC-----CEEEecCCCHHHHHhcC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKE-SRK--LGF-----PILYGDASRPAVLLSAG 474 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~-~~~--~~~-----~vi~GD~~~~~~L~~a~ 474 (663)
++.|+|.|.+|..++..|. ..| .+++++|.|+++.+. +.+ +.. ..++ .+|.+ .
T Consensus 2 kI~IIGaG~VG~~~a~~l~----------~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~~-----~ 64 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALL----------LRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDYA-----D 64 (308)
T ss_pred EEEEECCCHHHHHHHHHHH----------HcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCHH-----H
Confidence 4899999999999999997 556 689999999987652 332 111 1112 12322 2
Q ss_pred CCCCcEEEEEcCCH-----------HHHHH----HHHHHHHhCCCCcEEEEecChhh--HHHHH-HcCC--CeEEcC-ch
Q 006034 475 ITSPKAVMIMYTDK-----------KRTIE----AVQRLRLAFPAIPIYARAQDMMH--LLDLK-KAGA--TDAILE-NA 533 (663)
Q Consensus 475 i~~a~~vv~~~~dd-----------~~n~~----~~~~~r~~~~~~~iia~~~~~~~--~~~l~-~~Ga--d~vi~p-~~ 533 (663)
+++||.++++.+.. ..|.. .+..+++.+|+..++... ||.+ ...+. ..|. .+|+-- ..
T Consensus 65 l~~aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t-NP~d~~~~~~~~~sg~p~~~viG~gt~ 143 (308)
T cd05292 65 CKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT-NPVDVLTYVAYKLSGLPPNRVIGSGTV 143 (308)
T ss_pred hCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-CcHHHHHHHHHHHHCcCHHHeecccch
Confidence 68999888887641 12443 445556667775555554 4432 22232 2343 245533 33
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHH
Q 006034 534 ETSLQLGSKLLKGFGVMSDDVTF 556 (663)
Q Consensus 534 ~~~~~la~~~~~~~~~~~~~~~~ 556 (663)
+-+.++-+.+-+.+++++..+..
T Consensus 144 LDs~R~~~~la~~~~v~~~~v~~ 166 (308)
T cd05292 144 LDTARFRYLLGEHLGVDPRSVHA 166 (308)
T ss_pred hhHHHHHHHHHHHhCCCccceec
Confidence 33456666666677777755543
No 317
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.35 E-value=0.39 Score=49.37 Aligned_cols=73 Identities=14% Similarity=0.086 Sum_probs=54.1
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ ....++.+|.+|++-++++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~ 76 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLV----------AAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARA 76 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHH
Confidence 367899996 899999999997 789999999999877554432 1356788999998866542
Q ss_pred ------CCCCCcEEEEEc
Q 006034 474 ------GITSPKAVMIMY 485 (663)
Q Consensus 474 ------~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~~~~~~~~d~li~~a 94 (276)
T PRK05875 77 VDAATAWHGRLHGVVHCA 94 (276)
T ss_pred HHHHHHHcCCCCEEEECC
Confidence 123567777554
No 318
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.34 E-value=0.74 Score=51.71 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=65.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-------------HHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-------------PAV 469 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-------------~~~ 469 (663)
..+++|+|+|..|...++.+. ..|..|+++|.++++.+.+++.|..++.=|..+ ++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak----------~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAAN----------SLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHH
Confidence 468999999999999999997 788899999999999988888777765544311 111
Q ss_pred H------HhcCCCCCcEEEEEc---CCHHHHHHHHHHHHHhCCCCcEE
Q 006034 470 L------LSAGITSPKAVMIMY---TDKKRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 470 L------~~a~i~~a~~vv~~~---~dd~~n~~~~~~~r~~~~~~~ii 508 (663)
. -.-.++++|.++.+. +...--+..-.+.+.+.|...|+
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1 112357799887666 32222234445567777774444
No 319
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=91.34 E-value=0.3 Score=57.25 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=53.6
Q ss_pred CCCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-cCCCEEEecCCCHHH-HHhcCCCC
Q 006034 401 EGSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-LGFPILYGDASRPAV-LLSAGITS 477 (663)
Q Consensus 401 ~~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~~-L~~a~i~~ 477 (663)
+..++|+|.|. |-+|+.+++.|.+ +.|++|+++|++++....... .+.+++.||.+|++. ++++ +++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~---------~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~-l~~ 382 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLR---------DDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYH-IKK 382 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHh---------CCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHH-hcC
Confidence 44567999995 9999999999971 357999999998865443332 467889999998654 4432 457
Q ss_pred CcEEE
Q 006034 478 PKAVM 482 (663)
Q Consensus 478 a~~vv 482 (663)
+|+|+
T Consensus 383 ~D~Vi 387 (660)
T PRK08125 383 CDVVL 387 (660)
T ss_pred CCEEE
Confidence 88776
No 320
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=91.33 E-value=0.82 Score=47.17 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=72.7
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEE-Ee-CChHHH-HHHHh-cC---CCEEEecCCCHHHHHhcCCC
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVA-FD-LNPSVV-KESRK-LG---FPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvv-id-~d~~~~-~~~~~-~~---~~vi~GD~~~~~~L~~a~i~ 476 (663)
+|.|+| +|++|+.+++.+.+ .++.+++. +| .+++.. +.+.+ .+ ..+.. .+|.+.+ ..
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~---------~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~--~~d~~~l----~~ 67 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALA---------AEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV--TDDLEAV----ET 67 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHh---------CCCCEEEEEEecCCccccCCCHHHhcCcCcCCcee--eCCHHHh----cC
Confidence 689999 69999999999972 56777655 56 333331 11111 01 11111 1333434 25
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE--ecChhhHHHH----HHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 477 SPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR--AQDMMHLLDL----KKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 477 ~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~--~~~~~~~~~l----~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
++|++|.+|+. +.-...+..+.+.+. ++++- .-+++..+.+ ++.|+-.++.|+...|..+..++++
T Consensus 68 ~~DvVIdfT~p-~~~~~~~~~al~~g~--~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~ 139 (266)
T TIGR00036 68 DPDVLIDFTTP-EGVLNHLKFALEHGV--RLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLE 139 (266)
T ss_pred CCCEEEECCCh-HHHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHH
Confidence 68988888755 344455556666653 44542 2455455444 4456667888999877777766665
No 321
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=91.33 E-value=0.36 Score=54.21 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=53.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---------------------HHHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---------------------~~~~~~~~~~~vi 460 (663)
..++++|+|.|..|...|..|. +.|++|+++|+++. ..+.+.+.|..+.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~----------~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~ 211 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLA----------RAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR 211 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------hCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 4568999999999999999998 78999999997642 1344555677776
Q ss_pred EecCCCHHH-HHhcCCCCCcEEEEEcCCH
Q 006034 461 YGDASRPAV-LLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 461 ~GD~~~~~~-L~~a~i~~a~~vv~~~~dd 488 (663)
.+.....++ .++. ..++|.++++++..
T Consensus 212 ~~~~v~~~~~~~~~-~~~~d~vvlAtGa~ 239 (471)
T PRK12810 212 TNVEVGKDITAEEL-LAEYDAVFLGTGAY 239 (471)
T ss_pred eCCEECCcCCHHHH-HhhCCEEEEecCCC
Confidence 654432111 1111 13689999998763
No 322
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.32 E-value=0.4 Score=48.12 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=54.3
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ . ...++.+|.+|++.++++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALA----------KEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHH
Confidence 356888885 689999999997 789999999999876554332 2 355788999999877553
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|.+.
T Consensus 77 ~~~~~~~~id~vi~~a 92 (239)
T PRK07666 77 QLKNELGSIDILINNA 92 (239)
T ss_pred HHHHHcCCccEEEEcC
Confidence 124678777654
No 323
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.31 E-value=0.52 Score=53.23 Aligned_cols=39 Identities=21% Similarity=0.496 Sum_probs=35.5
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
++|-|+|.|.+|..+|+.+. ..|++|++.|.+++..+..
T Consensus 6 ~kV~VIGaG~MG~gIA~~la----------~aG~~V~l~d~~~e~l~~~ 44 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAA----------SAGHQVLLYDIRAEALARA 44 (503)
T ss_pred cEEEEECcCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHH
Confidence 56999999999999999997 7899999999999988654
No 324
>PRK06181 short chain dehydrogenase; Provisional
Probab=91.31 E-value=0.37 Score=49.10 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=53.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ ....++.+|.+|++-++++
T Consensus 2 ~~vlVtGasg~iG~~la~~l~----------~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 71 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLA----------RAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEA 71 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 35888887 889999999997 788999999999877554432 2356788999998876543
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-+.
T Consensus 72 ~~~~~~~id~vi~~a 86 (263)
T PRK06181 72 AVARFGGIDILVNNA 86 (263)
T ss_pred HHHHcCCCCEEEECC
Confidence 123567776654
No 325
>PRK08251 short chain dehydrogenase; Provisional
Probab=91.31 E-value=0.4 Score=48.34 Aligned_cols=72 Identities=11% Similarity=0.182 Sum_probs=53.8
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.| .|.+|+.+++.|. ++|++|+++++++++.+.+.+ ....++.+|.+|++.++++
T Consensus 3 k~vlItGas~giG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 72 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFA----------AKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVF 72 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHH
Confidence 4688887 5889999999997 778999999999987665542 1356788999999866431
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.++...
T Consensus 73 ~~~~~~~~~id~vi~~a 89 (248)
T PRK08251 73 AEFRDELGGLDRVIVNA 89 (248)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 234677776654
No 326
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=91.28 E-value=0.69 Score=47.66 Aligned_cols=46 Identities=22% Similarity=0.437 Sum_probs=41.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGF 457 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~ 457 (663)
...++=-+|.|.+|..++..|. +.|++|+|-|++.++++.+.+.|.
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLi----------k~G~kVtV~dr~~~k~~~f~~~Ga 79 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLI----------KAGYKVTVYDRTKDKCKEFQEAGA 79 (327)
T ss_pred ccceeeEEeeccchHHHHHHHH----------HcCCEEEEEeCcHHHHHHHHHhch
Confidence 4678999999999999999998 899999999999999988876553
No 327
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=91.27 E-value=0.45 Score=48.28 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=53.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hc--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++..+.+. +. ...++.+|.+|++.++++
T Consensus 12 k~ilItGas~~IG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALA----------GAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFAR 81 (256)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 46777765 889999999997 78999999999987655433 22 367889999999876542
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|...+
T Consensus 82 ~~~~~~~id~vi~~ag 97 (256)
T PRK06124 82 IDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1235677765443
No 328
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.22 E-value=0.35 Score=56.45 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---------------------HHHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---------------------~~~~~~~~~~~vi 460 (663)
..++|+|+|.|..|...|..|. ..|++|+++|.+++ ..+.+.+.|..+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~----------~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~ 378 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILA----------RAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFH 378 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEE
Confidence 4678999999999999999998 78999999998873 3455666777776
Q ss_pred EecCCC-HHHHHhcCCCCCcEEEEEcCC
Q 006034 461 YGDASR-PAVLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 461 ~GD~~~-~~~L~~a~i~~a~~vv~~~~d 487 (663)
.+.--. .-.+++. ..+.|+++++++.
T Consensus 379 ~~~~v~~~~~~~~l-~~~~DaV~latGa 405 (639)
T PRK12809 379 LNCEIGRDITFSDL-TSEYDAVFIGVGT 405 (639)
T ss_pred cCCccCCcCCHHHH-HhcCCEEEEeCCC
Confidence 654221 1122221 2468999999875
No 329
>PLN02214 cinnamoyl-CoA reductase
Probab=91.21 E-value=0.49 Score=50.66 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH-----HHHh--cCCCEEEecCCCHHHHHhcC
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK-----ESRK--LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~-----~~~~--~~~~vi~GD~~~~~~L~~a~ 474 (663)
.++++|.|. |-+|+.+++.|. ++|++|++++++++... .+.. ....++.+|.+|++.+.++
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 78 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILL----------ERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA- 78 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHH----------HCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH-
Confidence 357999998 999999999997 78999999998766422 1111 1356788999999988764
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
++.+|.|+-+.
T Consensus 79 ~~~~d~Vih~A 89 (342)
T PLN02214 79 IDGCDGVFHTA 89 (342)
T ss_pred HhcCCEEEEec
Confidence 34678777665
No 330
>PLN02253 xanthoxin dehydrogenase
Probab=91.21 E-value=0.44 Score=49.18 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=53.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a---- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++..+...+ .....+.+|.+|++.++++
T Consensus 19 k~~lItGas~gIG~~la~~l~----------~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFH----------KHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHH
Confidence 45788875 789999999997 789999999998876655443 2466889999999877653
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 89 ~~~~g~id~li~~A 102 (280)
T PLN02253 89 VDKFGTLDIMVNNA 102 (280)
T ss_pred HHHhCCCCEEEECC
Confidence 123567666543
No 331
>PRK05717 oxidoreductase; Validated
Probab=91.18 E-value=0.47 Score=48.18 Aligned_cols=72 Identities=18% Similarity=0.175 Sum_probs=52.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|+++|+++++.+...+ ....++.+|.+|++-++++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~----------~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 80 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLI----------AEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLG 80 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 56888886 899999999997 789999999999877655443 2356789999998765432
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 81 ~~g~id~li~~a 92 (255)
T PRK05717 81 QFGRLDALVCNA 92 (255)
T ss_pred HhCCCCEEEECC
Confidence 123567776543
No 332
>PLN02477 glutamate dehydrogenase
Probab=91.18 E-value=0.75 Score=50.32 Aligned_cols=109 Identities=18% Similarity=0.215 Sum_probs=67.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCC----------hHHHHHHHhcCCCE--EEe--cCCCH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLN----------PSVVKESRKLGFPI--LYG--DASRP 467 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d----------~~~~~~~~~~~~~v--i~G--D~~~~ 467 (663)
..+++|.|+|++|+.+++.|. +.|.+|+ |-|.+ .+.+.+..+.+-.+ +.| ..+++
T Consensus 206 g~~VaIqGfGnVG~~~A~~L~----------e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~ 275 (410)
T PLN02477 206 GQTFVIQGFGNVGSWAAQLIH----------EKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPD 275 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCc
Confidence 457999999999999999997 7899999 66776 55553333211111 111 12344
Q ss_pred HHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec----ChhhHHHHHHcCCCeEEcCc
Q 006034 468 AVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ----DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 468 ~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~----~~~~~~~l~~~Gad~vi~p~ 532 (663)
++|. .++|.++=+.-.. ..-...+.++ ++++|+..- +++..+.|++-|+- +.|.
T Consensus 276 e~l~----~~~DvliP~Al~~---~I~~~na~~i--~ak~I~egAN~p~t~ea~~~L~~rGI~--~~PD 333 (410)
T PLN02477 276 DILV----EPCDVLIPAALGG---VINKENAADV--KAKFIVEAANHPTDPEADEILRKKGVV--VLPD 333 (410)
T ss_pred ccee----ccccEEeeccccc---cCCHhHHHHc--CCcEEEeCCCCCCCHHHHHHHHHCCcE--EECh
Confidence 4443 2888665554333 3333345555 456777543 35678889998874 4476
No 333
>PRK12367 short chain dehydrogenase; Provisional
Probab=91.10 E-value=0.69 Score=47.05 Aligned_cols=71 Identities=11% Similarity=0.176 Sum_probs=51.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh-HHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP-SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~-~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++ +..+...+.....+..|.+|++-+++. ..+.|.+
T Consensus 15 k~~lITGas~gIG~ala~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~iDil 83 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFR----------AKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQ-LASLDVL 83 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHH----------HCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHh-cCCCCEE
Confidence 56888887 679999999997 7899999999987 332222222235678999999877653 4567877
Q ss_pred EEEc
Q 006034 482 MIMY 485 (663)
Q Consensus 482 v~~~ 485 (663)
|...
T Consensus 84 VnnA 87 (245)
T PRK12367 84 ILNH 87 (245)
T ss_pred EECC
Confidence 6654
No 334
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.09 E-value=0.21 Score=47.77 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=41.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEec
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGD 463 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD 463 (663)
...+++|+|.|+.|+..++.+. ..|.++++.|.++++.+.....+...+.=+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~----------~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAK----------GLGAEVVVPDERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHH----------HTT-EEEEEESSHHHHHHHHHTTTEESEET
T ss_pred CCeEEEEECCCHHHHHHHHHHh----------HCCCEEEeccCCHHHHHhhhcccCceEEEc
Confidence 3468999999999999999997 799999999999999888877655544433
No 335
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.09 E-value=1.6 Score=44.01 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=60.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChH-------------------HHH----HHHhc--C
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPS-------------------VVK----ESRKL--G 456 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~-------------------~~~----~~~~~--~ 456 (663)
+.||+|+|.|-+|..+++.|. ..|. +++++|.|.= +++ ++.+. .
T Consensus 11 ~~~VlVvG~GGvGs~va~~La----------r~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALA----------RSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHH----------HcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 458999999999999999997 5565 7999997741 122 22221 1
Q ss_pred C--CEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 457 F--PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 457 ~--~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
. ..+....+ ++...+.--++.|.||.++++-+.-..+...+++.+ +++|.
T Consensus 81 ~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~--ip~I~ 132 (231)
T cd00755 81 CEVDAVEEFLT-PDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK--IPVIS 132 (231)
T ss_pred cEEEEeeeecC-HhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC--CCEEE
Confidence 2 22333333 223333223468999888888777777777788875 45555
No 336
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=91.07 E-value=1.6 Score=37.69 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=64.6
Q ss_pred EEEEeCChHHHHHHHh----cCCCEEEecCCCHHHHHhcCCCCCcEEEEEcCCH-HHHHHHHHHHHHhCCCCcEEEEecC
Q 006034 439 FVAFDLNPSVVKESRK----LGFPILYGDASRPAVLLSAGITSPKAVMIMYTDK-KRTIEAVQRLRLAFPAIPIYARAQD 513 (663)
Q Consensus 439 vvvid~d~~~~~~~~~----~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd-~~n~~~~~~~r~~~~~~~iia~~~~ 513 (663)
|.++|.|+...+.+.+ .++..+.-=.+-.+.++...-...|.+++-.+-+ ..-...+..+|+.+|+.++++..++
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCC
Confidence 5788999988666543 4552333223344556666667799888776443 4556678888999999998887754
Q ss_pred --hhhHHHHHHcCCCeEEcCc
Q 006034 514 --MMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 514 --~~~~~~l~~~Gad~vi~p~ 532 (663)
........++|++.++.-.
T Consensus 81 ~~~~~~~~~~~~g~~~~l~kp 101 (112)
T PF00072_consen 81 DDSDEVQEALRAGADDYLSKP 101 (112)
T ss_dssp TSHHHHHHHHHTTESEEEESS
T ss_pred CCHHHHHHHHHCCCCEEEECC
Confidence 4577788899999776654
No 337
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=91.07 E-value=0.47 Score=47.72 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=53.4
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH----Hhc--CCCEEEecCCCHHHHHhc--C
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RKL--GFPILYGDASRPAVLLSA--G 474 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~----~~~--~~~vi~GD~~~~~~L~~a--~ 474 (663)
++++|.| .|.+|+.+++.|. ++|++|+++++++++.+.. .+. ...++.+|.+|++.++++ +
T Consensus 7 ~~ilItGasg~iG~~l~~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLA----------ADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH
Confidence 4688888 5999999999997 7899999999997654433 332 266789999999877663 1
Q ss_pred ----CCCCcEEEEEc
Q 006034 475 ----ITSPKAVMIMY 485 (663)
Q Consensus 475 ----i~~a~~vv~~~ 485 (663)
..+.|.++...
T Consensus 77 ~~~~~~~~d~vi~~a 91 (251)
T PRK12826 77 GVEDFGRLDILVANA 91 (251)
T ss_pred HHHHhCCCCEEEECC
Confidence 13677776665
No 338
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=91.01 E-value=0.35 Score=50.27 Aligned_cols=127 Identities=14% Similarity=0.069 Sum_probs=74.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|+|.|..|+.+++.|. +.| .+|.++++++++.+.+.+.-......+. +.+ ....+.++|.+
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~----------~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~--~~~~~~~~Div 189 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLL----------DLGVAEITIVNRTVERAEELAKLFGALGKAEL-DLE--LQEELADFDLI 189 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHHhhhccceee-ccc--chhccccCCEE
Confidence 457999999999999999997 677 7899999999998887653111000011 001 12345789999
Q ss_pred EEEcCCHHHH-HHH-HHHHHHhCCCCcEEEEecChhhH---HHHHHcCCCeEEcCchHHHHHHHHHH
Q 006034 482 MIMYTDKKRT-IEA-VQRLRLAFPAIPIYARAQDMMHL---LDLKKAGATDAILENAETSLQLGSKL 543 (663)
Q Consensus 482 v~~~~dd~~n-~~~-~~~~r~~~~~~~iia~~~~~~~~---~~l~~~Gad~vi~p~~~~~~~la~~~ 543 (663)
|.+|+....+ ... -.....+.++..++=.+.++... +..++.|+ .+++-....-.|-+...
T Consensus 190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~-~~~~G~~Ml~~Qa~~~f 255 (278)
T PRK00258 190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPLPTPFLAWAKAQGA-RTIDGLGMLVHQAAEAF 255 (278)
T ss_pred EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCCCCHHHHHHHHCcC-eecCCHHHHHHHHHHHH
Confidence 8888754211 000 00112334443455455565544 44566787 56676654333433333
No 339
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.00 E-value=0.51 Score=52.53 Aligned_cols=90 Identities=19% Similarity=0.205 Sum_probs=58.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH----HHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~----~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++++|+|.|+.|...++.|. +.|++|++.|.+++. .+.+.+.|..+..|+-. .+.+.+ .+
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~----------~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~~~----~~ 69 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLH----------KLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHP-LELLDE----DF 69 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHH----------HCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCC-HHHhcC----cC
Confidence 357999999999999999997 899999999976532 34456667777766433 233321 37
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
|.+|...+=+..| .....||+.+ ++++.+
T Consensus 70 d~vV~s~gi~~~~-~~~~~a~~~~--i~v~~~ 98 (447)
T PRK02472 70 DLMVKNPGIPYTN-PMVEKALEKG--IPIITE 98 (447)
T ss_pred CEEEECCCCCCCC-HHHHHHHHCC--CcEEeH
Confidence 8666655322233 3455666654 455544
No 340
>PLN00198 anthocyanidin reductase; Provisional
Probab=91.00 E-value=0.39 Score=51.15 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=52.3
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH------h-cCCCEEEecCCCHHHHHhcC
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR------K-LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~------~-~~~~vi~GD~~~~~~L~~a~ 474 (663)
.++++|.| .|-+|+.+++.|. +.|++|+++.+|++...... + ....++.||.+|++.+.++
T Consensus 9 ~~~vlItG~~GfIG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~- 77 (338)
T PLN00198 9 KKTACVIGGTGFLASLLIKLLL----------QKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAP- 77 (338)
T ss_pred CCeEEEECCchHHHHHHHHHHH----------HCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHH-
Confidence 35688888 6889999999998 78999988877765432211 1 1367889999999887664
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
++++|.|+-+.
T Consensus 78 ~~~~d~vih~A 88 (338)
T PLN00198 78 IAGCDLVFHVA 88 (338)
T ss_pred HhcCCEEEEeC
Confidence 34678777544
No 341
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=90.99 E-value=0.41 Score=49.36 Aligned_cols=74 Identities=18% Similarity=0.119 Sum_probs=54.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a-- 473 (663)
.+.++|.|. |.+|+.+++.|. ++|++|++++++++..+.+.+ . ....+.+|.+|++-++++
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 79 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELA----------RAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQ 79 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 356788886 889999999997 789999999999877655433 2 256789999998866532
Q ss_pred ----CCCCCcEEEEEcC
Q 006034 474 ----GITSPKAVMIMYT 486 (663)
Q Consensus 474 ----~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 80 ~~~~~~g~id~li~~ag 96 (278)
T PRK08277 80 QILEDFGPCDILINGAG 96 (278)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 2346787776543
No 342
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=90.91 E-value=0.69 Score=50.70 Aligned_cols=70 Identities=23% Similarity=0.273 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
++++|.|. |-+|+.++++|. ++|.+|+++++++++.+...+ .+...+..|.+|++.+++. .++.|
T Consensus 179 K~VLITGASgGIG~aLA~~La----------~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~-l~~ID 247 (406)
T PRK07424 179 KTVAVTGASGTLGQALLKELH----------QQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAEL-LEKVD 247 (406)
T ss_pred CEEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHH-hCCCC
Confidence 56888887 899999999997 789999999998876543322 1345788999999987653 45788
Q ss_pred EEEEE
Q 006034 480 AVMIM 484 (663)
Q Consensus 480 ~vv~~ 484 (663)
.+|..
T Consensus 248 iLInn 252 (406)
T PRK07424 248 ILIIN 252 (406)
T ss_pred EEEEC
Confidence 77754
No 343
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.90 E-value=0.76 Score=42.03 Aligned_cols=88 Identities=13% Similarity=0.055 Sum_probs=59.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHH-------------------HHH----HHh--cCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSV-------------------VKE----SRK--LGF 457 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~-------------------~~~----~~~--~~~ 457 (663)
.+++|+|.|.+|..+++.|. ..|. +++++|.|.=. ++. +.+ ...
T Consensus 3 ~~v~iiG~G~vGs~va~~L~----------~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~ 72 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLA----------RSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDV 72 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHH----------HHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTS
T ss_pred CEEEEECcCHHHHHHHHHHH----------HhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCce
Confidence 58999999999999999997 5666 68999876321 222 222 122
Q ss_pred --CEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCC
Q 006034 458 --PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFP 503 (663)
Q Consensus 458 --~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~ 503 (663)
..+.-+.++ +...+. ++++|.+|.++++.+....+...+++.+.
T Consensus 73 ~v~~~~~~~~~-~~~~~~-~~~~d~vi~~~d~~~~~~~l~~~~~~~~~ 118 (135)
T PF00899_consen 73 EVEAIPEKIDE-ENIEEL-LKDYDIVIDCVDSLAARLLLNEICREYGI 118 (135)
T ss_dssp EEEEEESHCSH-HHHHHH-HHTSSEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred eeeeeeccccc-cccccc-ccCCCEEEEecCCHHHHHHHHHHHHHcCC
Confidence 233444433 333322 26889998898888888888888888863
No 344
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=90.90 E-value=11 Score=41.87 Aligned_cols=73 Identities=26% Similarity=0.451 Sum_probs=56.2
Q ss_pred hhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHhhhhhhhHHHHH
Q 006034 269 GLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIIIKTLIISAIGPRV--GLTLQESVRIGLLLSQGGEFAFVV 341 (663)
Q Consensus 269 ~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~K~~~~~~~~~~~--g~~~r~~~~~g~~l~~~G~~~lvl 341 (663)
.+++|+--..-|.++|.+.+.++|..+..+....++...++..+...+. ++|+..++..|..++|..-+.+.-
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 6777777788999999999998888777766666666666666666555 888889999998888776655543
No 345
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=90.86 E-value=1.4 Score=43.39 Aligned_cols=98 Identities=17% Similarity=0.132 Sum_probs=59.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChH---------------------HH----HHHHh--
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPS---------------------VV----KESRK-- 454 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~---------------------~~----~~~~~-- 454 (663)
+.||+|+|.|-+|..+++.|. ..|. +++++|.|.- ++ +.+++
T Consensus 19 ~s~VlviG~gglGsevak~L~----------~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lN 88 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLV----------LAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELN 88 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHH----------HcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHC
Confidence 468999999999999999997 5666 4889987721 11 11222
Q ss_pred cCC--CEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEe
Q 006034 455 LGF--PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARA 511 (663)
Q Consensus 455 ~~~--~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~ 511 (663)
... ..+..+.++.+-..+.-++++|.|+.++++.+....+...+++.+-. .+.+..
T Consensus 89 p~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip-~i~~~~ 146 (198)
T cd01485 89 PNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIP-FISCAT 146 (198)
T ss_pred CCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 112 22333343111111222568898887777766667777888887632 344443
No 346
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=90.79 E-value=1.1 Score=50.83 Aligned_cols=40 Identities=20% Similarity=0.425 Sum_probs=36.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
-++|-|+|.|.+|..+|..+. ..|++|++.|.+++..+..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la----------~aG~~V~l~D~~~e~l~~~ 46 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAA----------QAGHTVLLYDARAGAAAAA 46 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHH
Confidence 357999999999999999997 7899999999999988774
No 347
>PRK07576 short chain dehydrogenase; Provisional
Probab=90.77 E-value=0.5 Score=48.44 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=53.1
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----h--cCCCEEEecCCCHHHHHhc--
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K--LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~--~~~~vi~GD~~~~~~L~~a-- 473 (663)
.++++|.|. |.+|..+++.|. +.|++|++++++++..+... + ....++.+|.+|++-++++
T Consensus 9 ~k~ilItGasggIG~~la~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFA----------RAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH
Confidence 457888887 899999999997 78999999999987755432 2 1345678999998876543
Q ss_pred ----CCCCCcEEEEE
Q 006034 474 ----GITSPKAVMIM 484 (663)
Q Consensus 474 ----~i~~a~~vv~~ 484 (663)
.....|.+|..
T Consensus 79 ~~~~~~~~iD~vi~~ 93 (264)
T PRK07576 79 QIADEFGPIDVLVSG 93 (264)
T ss_pred HHHHHcCCCCEEEEC
Confidence 12356877644
No 348
>PRK07677 short chain dehydrogenase; Provisional
Probab=90.69 E-value=0.53 Score=47.70 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=52.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++.++++++.+.+.+ .....+.+|.+|++.++++
T Consensus 2 k~~lItG~s~giG~~ia~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFA----------EEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQ 71 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHH
Confidence 35778876 669999999997 789999999999887655442 2356788999998877542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 72 ~~~~~~~id~lI~~a 86 (252)
T PRK07677 72 IDEKFGRIDALINNA 86 (252)
T ss_pred HHHHhCCccEEEECC
Confidence 123567776544
No 349
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=90.69 E-value=0.5 Score=47.24 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=53.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc--C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--G 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--~ 474 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ . ....+.+|.+|++.+.++ +
T Consensus 6 ~~ilItGasg~iG~~l~~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLA----------ADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEA 75 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 57888886 899999999997 789999999999887655432 2 255677999999876543 1
Q ss_pred ----CCCCcEEEEEc
Q 006034 475 ----ITSPKAVMIMY 485 (663)
Q Consensus 475 ----i~~a~~vv~~~ 485 (663)
....|.++-..
T Consensus 76 ~~~~~~~id~vi~~a 90 (246)
T PRK05653 76 AVEAFGALDILVNNA 90 (246)
T ss_pred HHHHhCCCCEEEECC
Confidence 23457776655
No 350
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=90.68 E-value=0.51 Score=47.55 Aligned_cols=73 Identities=14% Similarity=0.161 Sum_probs=56.0
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++..+.+.+ ....++.+|.+|++.++++
T Consensus 4 ~~ilItGas~~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 73 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFA----------EEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAA 73 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 56888885 889999999997 789999999999987665432 2467789999999877654
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|....
T Consensus 74 ~~~~~~~~d~vi~~ag 89 (250)
T TIGR03206 74 AEQALGPVDVLVNNAG 89 (250)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1235787776664
No 351
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=90.64 E-value=0.49 Score=47.28 Aligned_cols=99 Identities=23% Similarity=0.300 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.||+|+|.|-+|...++.|. ..|. +.++||.|.=.+..... -.+.+.|| +.+++
T Consensus 29 ~~~~V~VvGiGGVGSw~veALa----------RsGig~itlID~D~v~vTN~NR-Qi~A~~~~-----------iGk~K- 85 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALA----------RSGIGRITLIDMDDVCVTNTNR-QIHALLGD-----------IGKPK- 85 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHH----------HcCCCeEEEEecccccccccch-hhHhhhhh-----------cccHH-
Confidence 3469999999999999999998 4555 78999987643321111 11222221 22222
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHcCCCeEEcCch
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~--~~~~~~~l~~~Gad~vi~p~~ 533 (663)
--......++.||++.|-+... ++++.+.+-.-+-|+||+--.
T Consensus 86 ----------v~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD 130 (263)
T COG1179 86 ----------VEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAID 130 (263)
T ss_pred ----------HHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchh
Confidence 1234567889999988766543 677777777779999998764
No 352
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=90.63 E-value=18 Score=39.15 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=64.1
Q ss_pred hhhhhHHHHHHHhccccChhHHhhhHHHHHH---HHHHHHHHHHHHHHHHHhhcCCChHHHHHHH-HhhhhhhhHHHHHH
Q 006034 267 FRGLLLGLFFVTTGSSIDIELLFREWPNVLA---LLAGLIIIKTLIISAIGPRVGLTLQESVRIG-LLLSQGGEFAFVVF 342 (663)
Q Consensus 267 ~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~---~~~~~~l~K~~~~~~~~~~~g~~~r~~~~~g-~~l~~~G~~~lvla 342 (663)
+.++++-.||..+|+..+++.+.+.+..+.. +.........+.....+...+.++.-.+..| ..+...=..+...+
T Consensus 65 l~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g 144 (368)
T PF03616_consen 65 LQDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFG 144 (368)
T ss_pred HHHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHH
Confidence 4678889999999999998887655432222 1122233444444455566788887776654 34444334455555
Q ss_pred HHHHHc-CCCchhhHHHHHHHH--HHHHhh-hHHHHHHhHH
Q 006034 343 SLANRL-GVLPLELNKLLIIVV--VLSMAL-TPLLNEIGRW 379 (663)
Q Consensus 343 ~~a~~~-g~i~~~~~~~lv~~v--vlt~ii-~pi~~~~~~~ 379 (663)
....+. |+-+....++..++. +...++ .|+.++..+|
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk 185 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRK 185 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 555555 765555444443332 233344 4665554443
No 353
>PRK06500 short chain dehydrogenase; Provisional
Probab=90.61 E-value=0.54 Score=47.33 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=52.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a------ 473 (663)
++++|.|. |.+|+.+++.|. +.|++|++++++++..+...++ ....+++|.+|++-.+++
T Consensus 7 k~vlItGasg~iG~~la~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFL----------AEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAE 76 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 57888886 899999999998 7899999999998876655432 345678999988754321
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~id~vi~~a 88 (249)
T PRK06500 77 AFGRLDAVFINA 88 (249)
T ss_pred HhCCCCEEEECC
Confidence 124567766543
No 354
>PRK03612 spermidine synthase; Provisional
Probab=90.56 E-value=1.7 Score=49.51 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=50.7
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHh--------------cCCCEEEecCC
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK--------------LGFPILYGDAS 465 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~--------------~~~~vi~GD~~ 465 (663)
+..++|+++|+|. |....+.++ ..+ .+++++|.|++.++.+++ .+.+++++|+.
T Consensus 296 ~~~~rVL~IG~G~-G~~~~~ll~----------~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~ 364 (521)
T PRK03612 296 ARPRRVLVLGGGD-GLALREVLK----------YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAF 364 (521)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh----------CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHH
Confidence 4567899999985 433334443 333 699999999999988776 24567888886
Q ss_pred CHHHHHhcCCCCCcEEEEEcCC
Q 006034 466 RPAVLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 466 ~~~~L~~a~i~~a~~vv~~~~d 487 (663)
+ .+++. -++.|.|++-..|
T Consensus 365 ~--~l~~~-~~~fDvIi~D~~~ 383 (521)
T PRK03612 365 N--WLRKL-AEKFDVIIVDLPD 383 (521)
T ss_pred H--HHHhC-CCCCCEEEEeCCC
Confidence 3 34433 2689988887655
No 355
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=90.54 E-value=0.41 Score=56.03 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=54.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH---------------------HHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------------------VKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~---------------------~~~~~~~~~~vi 460 (663)
..++|+|+|.|..|...|..|. ..|++|+++|.+++. .+.+.+.|..+.
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La----------~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~ 261 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLL----------RKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFR 261 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 4568999999999999999998 789999999987542 345556777777
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCCH
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~dd 488 (663)
.+.....+ .+++.. .++|.++++|+..
T Consensus 262 ~~~~v~~dv~~~~~~-~~~DaVilAtGa~ 289 (652)
T PRK12814 262 FNTVFGRDITLEELQ-KEFDAVLLAVGAQ 289 (652)
T ss_pred eCCcccCccCHHHHH-hhcCEEEEEcCCC
Confidence 66542211 112111 2589999998763
No 356
>PRK07109 short chain dehydrogenase; Provisional
Probab=90.50 E-value=0.52 Score=50.31 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ .+ ..++.+|.+|++-++++
T Consensus 9 k~vlITGas~gIG~~la~~la----------~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFA----------RRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHH
Confidence 46888886 889999999997 789999999999987665442 23 45678999999987654
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
.....|.+|-..
T Consensus 79 ~~~~~g~iD~lInnA 93 (334)
T PRK07109 79 AEEELGPIDTWVNNA 93 (334)
T ss_pred HHHHCCCCCEEEECC
Confidence 123567666443
No 357
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=90.37 E-value=0.79 Score=48.66 Aligned_cols=83 Identities=20% Similarity=0.346 Sum_probs=56.4
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+.+-|+|+|++|+.+++.++ .-|.+|+..|. .++... +..-.++-.+=+++| .+||.+
T Consensus 142 gkTvGIiG~G~IG~~va~~l~----------afgm~v~~~d~~~~~~~~-----~~~~~~~~~~Ld~lL-----~~sDiv 201 (324)
T COG0111 142 GKTVGIIGLGRIGRAVAKRLK----------AFGMKVIGYDPYSPRERA-----GVDGVVGVDSLDELL-----AEADIL 201 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------hCCCeEEEECCCCchhhh-----ccccceecccHHHHH-----hhCCEE
Confidence 467999999999999999997 89999999998 333222 222333333334555 466767
Q ss_pred EEEcCC--HHHHHHHHHHHHHhCCCC
Q 006034 482 MIMYTD--KKRTIEAVQRLRLAFPAI 505 (663)
Q Consensus 482 v~~~~d--d~~n~~~~~~~r~~~~~~ 505 (663)
++.++- +..++.-.....++.+.+
T Consensus 202 ~lh~PlT~eT~g~i~~~~~a~MK~ga 227 (324)
T COG0111 202 TLHLPLTPETRGLINAEELAKMKPGA 227 (324)
T ss_pred EEcCCCCcchhcccCHHHHhhCCCCe
Confidence 666654 456666666677776654
No 358
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=90.36 E-value=0.55 Score=47.87 Aligned_cols=70 Identities=17% Similarity=0.046 Sum_probs=52.3
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-----cCCCEEEecCCCHHHHHhc-----
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-----LGFPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-----~~~~vi~GD~~~~~~L~~a----- 473 (663)
+++|.|. +.+|+.+++.|. ++|++|+++++|++..+...+ .....+..|.+|++-.+++
T Consensus 2 ~vlItGas~gIG~aia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~ 71 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELL----------KKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAW 71 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHH
Confidence 5788876 779999999997 789999999999887655432 2356789999998866542
Q ss_pred -CCCCCcEEEEE
Q 006034 474 -GITSPKAVMIM 484 (663)
Q Consensus 474 -~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 72 ~~~g~id~li~n 83 (259)
T PRK08340 72 ELLGGIDALVWN 83 (259)
T ss_pred HhcCCCCEEEEC
Confidence 23456766654
No 359
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=90.33 E-value=2.2 Score=37.94 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=50.1
Q ss_pred hcCCCEEE-ecC-CCHHHHHhcCCCCCcEEEEEcCCH---HHHHHHHHHHHHhCC-CCcEEEEecCh-hhHHHHHHcCCC
Q 006034 454 KLGFPILY-GDA-SRPAVLLSAGITSPKAVMIMYTDK---KRTIEAVQRLRLAFP-AIPIYARAQDM-MHLLDLKKAGAT 526 (663)
Q Consensus 454 ~~~~~vi~-GD~-~~~~~L~~a~i~~a~~vv~~~~dd---~~n~~~~~~~r~~~~-~~~iia~~~~~-~~~~~l~~~Gad 526 (663)
..|+.+++ |.. ..+++.+.+.-.++|.|.+...++ +.-..++..+|+.+| +++++.-=+-. .+.+.+++.|+|
T Consensus 25 ~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D 104 (119)
T cd02067 25 DAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVD 104 (119)
T ss_pred HCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCe
Confidence 34455444 222 234555666667888777665532 333456677888888 77766533322 234689999999
Q ss_pred eEEcCch
Q 006034 527 DAILENA 533 (663)
Q Consensus 527 ~vi~p~~ 533 (663)
.++.+..
T Consensus 105 ~~~~~~~ 111 (119)
T cd02067 105 AYFGPAT 111 (119)
T ss_pred EEECCHH
Confidence 9999885
No 360
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.33 E-value=0.66 Score=47.18 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=50.8
Q ss_pred CcEEEEcCC---cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc----
Q 006034 404 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 404 ~~viI~G~g---~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a---- 473 (663)
+.++|.|.+ .+|+.+++.|. ++|++|++.++|++..+.+.+ .....+..|.+|++-.+++
T Consensus 8 k~~lItGas~~~gIG~a~a~~la----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIK----------DQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATI 77 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHH----------HCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHH
Confidence 568888985 79999999998 789999999988543333332 2456788999998766542
Q ss_pred --CCCCCcEEEEE
Q 006034 474 --GITSPKAVMIM 484 (663)
Q Consensus 474 --~i~~a~~vv~~ 484 (663)
...+.|.+|..
T Consensus 78 ~~~~g~iD~lv~n 90 (252)
T PRK06079 78 KERVGKIDGIVHA 90 (252)
T ss_pred HHHhCCCCEEEEc
Confidence 23466776643
No 361
>PRK06139 short chain dehydrogenase; Provisional
Probab=90.31 E-value=0.52 Score=50.28 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=55.7
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhcC-
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a~- 474 (663)
.++++|.|. |-+|+.+++.|. ++|++|+++++|+++.+.+.+ .+ ..++..|.+|++-.+++-
T Consensus 7 ~k~vlITGAs~GIG~aia~~la----------~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFA----------RRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH
Confidence 357888887 789999999998 789999999999988765443 23 446789999998776531
Q ss_pred -----CCCCcEEEEEcC
Q 006034 475 -----ITSPKAVMIMYT 486 (663)
Q Consensus 475 -----i~~a~~vv~~~~ 486 (663)
....|.+|-..+
T Consensus 77 ~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 77 QAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHhcCCCCEEEECCC
Confidence 245677766543
No 362
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=90.29 E-value=0.85 Score=45.69 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=56.0
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc-----
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a----- 473 (663)
.++++|.| .|.+|+.+++.|. ++|+.|.+.++++++.+...+ ....++.+|.+|++.++++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~----------~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLH----------AQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAE 75 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHH
Confidence 35788888 4889999999997 788889889999887766543 2456788999999887654
Q ss_pred -CCCCCcEEEEEcC
Q 006034 474 -GITSPKAVMIMYT 486 (663)
Q Consensus 474 -~i~~a~~vv~~~~ 486 (663)
...+.|.+|-+..
T Consensus 76 ~~~~~id~vi~~ag 89 (245)
T PRK12936 76 ADLEGVDILVNNAG 89 (245)
T ss_pred HHcCCCCEEEECCC
Confidence 2346787776544
No 363
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.26 E-value=0.56 Score=47.67 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=52.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++++++|++++..+...+ .....+.+|.+|++.++++
T Consensus 3 k~ilItG~~~~IG~~la~~l~----------~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 72 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLA----------EEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALS 72 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHH
Confidence 45788876 689999999998 789999999999876544432 1366789999998876543
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 73 ~~~~~~~~~id~vv~~a 89 (259)
T PRK12384 73 RGVDEIFGRVDLLVYNA 89 (259)
T ss_pred HHHHHHcCCCCEEEECC
Confidence 113567776654
No 364
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=90.20 E-value=1.9 Score=37.91 Aligned_cols=95 Identities=16% Similarity=0.198 Sum_probs=73.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.+++|+=+|-|.+- .+|+.|+ +.|.+++++|.+++++. +|...+.-|.+||+.=- -+.||.+
T Consensus 13 ~~gkVvEVGiG~~~-~VA~~L~----------e~g~dv~atDI~~~~a~----~g~~~v~DDitnP~~~i---Y~~A~lI 74 (129)
T COG1255 13 ARGKVVEVGIGFFL-DVAKRLA----------ERGFDVLATDINEKTAP----EGLRFVVDDITNPNISI---YEGADLI 74 (129)
T ss_pred cCCcEEEEccchHH-HHHHHHH----------HcCCcEEEEecccccCc----ccceEEEccCCCccHHH---hhCccce
Confidence 56689999999885 5789998 89999999999998543 68999999999997543 3577877
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM 514 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~ 514 (663)
-..-.-.|---.+...+|+.+.++.+.-...++
T Consensus 75 YSiRpppEl~~~ildva~aVga~l~I~pL~Ge~ 107 (129)
T COG1255 75 YSIRPPPELQSAILDVAKAVGAPLYIKPLTGEP 107 (129)
T ss_pred eecCCCHHHHHHHHHHHHhhCCCEEEEecCCCC
Confidence 777666666666778888888776565555554
No 365
>PRK07478 short chain dehydrogenase; Provisional
Probab=90.15 E-value=0.63 Score=47.18 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=53.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++..+.+.+ . ...++.+|.+|++.++++
T Consensus 7 k~~lItGas~giG~~ia~~l~----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFA----------REGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHH
Confidence 46888886 679999999998 789999999999887665543 2 355778999998865542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|...
T Consensus 77 ~~~~~~~id~li~~a 91 (254)
T PRK07478 77 AVERFGGLDIAFNNA 91 (254)
T ss_pred HHHhcCCCCEEEECC
Confidence 123567766544
No 366
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.11 E-value=0.62 Score=52.14 Aligned_cols=87 Identities=23% Similarity=0.309 Sum_probs=59.0
Q ss_pred CCcEEEEcCCcchHH-HHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQV-LANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~-la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+++.|+|.|..|.. +|+.|. +.|++|.+.|.++. ..+.+.+.+..+..|. +++.+ +++|.
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~----------~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~--~~~~~-----~~~d~ 69 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLL----------NLGYKVSGSDLKESAVTQRLLELGAIIFIGH--DAENI-----KDADV 69 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHH----------hCCCeEEEECCCCChHHHHHHHCCCEEeCCC--CHHHC-----CCCCE
Confidence 357999999999999 799997 89999999998653 3445666677776544 34433 46887
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
||+..+=+..|- ....||+.+ ++++.
T Consensus 70 vv~spgi~~~~~-~~~~a~~~~--i~i~~ 95 (461)
T PRK00421 70 VVYSSAIPDDNP-ELVAARELG--IPVVR 95 (461)
T ss_pred EEECCCCCCCCH-HHHHHHHCC--CcEEe
Confidence 765554333333 345566654 44544
No 367
>PRK07775 short chain dehydrogenase; Provisional
Probab=90.09 E-value=0.62 Score=48.04 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=54.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc-
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a- 473 (663)
.+++++|.|. |-+|+.+++.|. ++|++|+++++++++.+...+ . ...++.+|.+|++.++++
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 78 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELA----------AAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFV 78 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 3457888885 899999999998 789999999998876554432 1 345678999999987542
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 79 ~~~~~~~~~id~vi~~A 95 (274)
T PRK07775 79 AQAEEALGEIEVLVSGA 95 (274)
T ss_pred HHHHHhcCCCCEEEECC
Confidence 234567666554
No 368
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=90.08 E-value=0.63 Score=51.32 Aligned_cols=68 Identities=18% Similarity=0.241 Sum_probs=50.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH----HHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV----VKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~----~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++|.|+|+|.-|+.+++.|. +.|++|.+.|.++.. ...+...+..+..|.-.+ ....++
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~----------~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~------~~~~~~ 70 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLL----------KLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD------EDLAEF 70 (448)
T ss_pred CCEEEEEecccccHHHHHHHH----------HCCCeEEEEcCCCCccchhhhhhhccCceeecCccch------hccccC
Confidence 568999999999999999998 899999999988776 222334567777775444 245677
Q ss_pred cEEEEEcC
Q 006034 479 KAVMIMYT 486 (663)
Q Consensus 479 ~~vv~~~~ 486 (663)
|.||..-+
T Consensus 71 d~vV~SPG 78 (448)
T COG0771 71 DLVVKSPG 78 (448)
T ss_pred CEEEECCC
Confidence 86655443
No 369
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.04 E-value=0.54 Score=48.42 Aligned_cols=130 Identities=16% Similarity=0.184 Sum_probs=72.1
Q ss_pred EEEEcC-CcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCChHHHHHHHh----cC-C---CEEEecCCCHHHHHh
Q 006034 406 VVIVGF-GQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESRK----LG-F---PILYGDASRPAVLLS 472 (663)
Q Consensus 406 viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~~~~~~~~~----~~-~---~vi~GD~~~~~~L~~ 472 (663)
+.|+|. |.+|..++..|. ..+ .+++++|.|+++.+.... .- . .-++. .+|. +
T Consensus 1 I~IIGagG~vG~~ia~~l~----------~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-~~d~----~ 65 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLA----------DGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-TDDP----Y 65 (263)
T ss_pred CEEECCCChHHHHHHHHHH----------hCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-CCch----H
Confidence 478999 999999999886 444 789999999977544332 10 0 11221 2231 2
Q ss_pred cCCCCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HHHH-cCC--CeEEcCc
Q 006034 473 AGITSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DLKK-AGA--TDAILEN 532 (663)
Q Consensus 473 a~i~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l~~-~Ga--d~vi~p~ 532 (663)
..+++||.||.+.+. | ..|+. ++..+++.+|+..++.. .||.+.- .+.+ .|. .+++---
T Consensus 66 ~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~-tNP~d~~t~~~~~~sg~~~~kviG~~ 144 (263)
T cd00650 66 EAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVV-SNPVDIITYLVWRYSGLPKEKVIGLG 144 (263)
T ss_pred HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHHHHHHHHhCCCchhEEEee
Confidence 335789988884422 1 23443 45566777888654444 5654332 3333 233 3455443
Q ss_pred hHHHHHHHHHHHHhcCCCH
Q 006034 533 AETSLQLGSKLLKGFGVMS 551 (663)
Q Consensus 533 ~~~~~~la~~~~~~~~~~~ 551 (663)
.....++-+.+-+.+++++
T Consensus 145 ~ld~~r~~~~la~~l~v~~ 163 (263)
T cd00650 145 TLDPIRFRRILAEKLGVDP 163 (263)
T ss_pred cchHHHHHHHHHHHhCCCc
Confidence 2223344444444455555
No 370
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.00 E-value=2.9 Score=44.13 Aligned_cols=135 Identities=13% Similarity=0.132 Sum_probs=81.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHh-c---C-CC-EEEecCCCHHHHHhcC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK-L---G-FP-ILYGDASRPAVLLSAG 474 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~-~---~-~~-vi~GD~~~~~~L~~a~ 474 (663)
+|.|+|.|++|..+|..|.. ...-.+++++|.++++++- +.+ . + .. -+++ .|.+ .
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~--------~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~y~-----~ 65 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA--------LGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GDYD-----D 65 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh--------cCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CCHH-----H
Confidence 47899999999999998851 1223479999999876432 222 1 1 12 2332 3333 4
Q ss_pred CCCCcEEEEEcCC------H-------HHHHHH----HHHHHHhCCCCcEEEEecChhhHH--HH-HHcC--CCeEEcC-
Q 006034 475 ITSPKAVMIMYTD------K-------KRTIEA----VQRLRLAFPAIPIYARAQDMMHLL--DL-KKAG--ATDAILE- 531 (663)
Q Consensus 475 i~~a~~vv~~~~d------d-------~~n~~~----~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~G--ad~vi~p- 531 (663)
.++||.||++.+. + ..|..+ +..+++.+|+. ++..+.||-+.- .. +..| -.+|+-.
T Consensus 66 ~~~aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~-i~ivvsNPvDv~t~~~~k~sg~p~~rviG~g 144 (307)
T cd05290 66 CADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEA-VIILITNPLDIAVYIAATEFDYPANKVIGTG 144 (307)
T ss_pred hCCCCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEecCcHHHHHHHHHHHhCcChhheeccc
Confidence 5788988887653 1 345543 44566667874 566666664432 22 3334 3345555
Q ss_pred chHHHHHHHHHHHHhcCCCHHHHH
Q 006034 532 NAETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 532 ~~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
..+-+.++-..+-+.+++++..++
T Consensus 145 t~LDs~R~~~~la~~l~v~~~~V~ 168 (307)
T cd05290 145 TMLDTARLRRIVADKYGVDPKNVT 168 (307)
T ss_pred chHHHHHHHHHHHHHhCCCcccEE
Confidence 455566777777777777775544
No 371
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=89.97 E-value=2.8 Score=40.32 Aligned_cols=85 Identities=18% Similarity=0.131 Sum_probs=53.8
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCCh------------------HHHHH----HHh--cC--C
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNP------------------SVVKE----SRK--LG--F 457 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~------------------~~~~~----~~~--~~--~ 457 (663)
+|.|+|.|-+|..+++.|. ..|.. ++++|.|. .+++. +++ .. .
T Consensus 1 ~VlViG~GglGs~ia~~La----------~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i 70 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLA----------RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKI 70 (174)
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEE
Confidence 5899999999999999997 67774 99999986 22222 222 12 2
Q ss_pred CEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHh
Q 006034 458 PILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLA 501 (663)
Q Consensus 458 ~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~ 501 (663)
..+..+.+++ .+. .-++++|.||.++++.+.-..+...+.+.
T Consensus 71 ~~~~~~~~~~-~~~-~~l~~~DlVi~~~d~~~~r~~i~~~~~~~ 112 (174)
T cd01487 71 EAINIKIDEN-NLE-GLFGDCDIVVEAFDNAETKAMLAESLLGN 112 (174)
T ss_pred EEEEeecChh-hHH-HHhcCCCEEEECCCCHHHHHHHHHHHHHH
Confidence 2233343332 222 23568898888877765544455555555
No 372
>PRK07806 short chain dehydrogenase; Provisional
Probab=89.94 E-value=0.67 Score=46.71 Aligned_cols=72 Identities=11% Similarity=0.093 Sum_probs=51.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH-HHHHH----Hhc--CCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS-VVKES----RKL--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~-~~~~~----~~~--~~~vi~GD~~~~~~L~~a-- 473 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++ +.+.+ .+. ....+.+|.+|++.++++
T Consensus 7 k~vlItGasggiG~~l~~~l~----------~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILA----------GAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMD 76 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHH----------HCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 56889996 899999999997 78999999888653 33322 222 356788999999876532
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+.|.+|...
T Consensus 77 ~~~~~~~~~d~vi~~a 92 (248)
T PRK07806 77 TAREEFGGLDALVLNA 92 (248)
T ss_pred HHHHhCCCCcEEEECC
Confidence 223567766554
No 373
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=89.92 E-value=0.79 Score=46.99 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=50.9
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cC----CCEEEecCCCHHHHHh
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LG----FPILYGDASRPAVLLS 472 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~----~~vi~GD~~~~~~L~~ 472 (663)
..++++|-|. +-+|+.+|+.|. ++|++++++-+++++.+.+.+ +. ..++.-|.+|++.+++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA----------~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~ 73 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLA----------RRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALER 73 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHH
Confidence 4568899997 889999999998 899999999999999877764 11 3678899999887765
No 374
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=89.91 E-value=2.5 Score=44.04 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=68.2
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHH--HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~--~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++.|+|.|++|+..+..+.+ .++.+++ +.|.|+++ .+..++.|....+.| -++.+++ .+.|.|
T Consensus 3 rVAIIG~G~IG~~h~~~ll~---------~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~--~e~ll~~---~dIDaV 68 (285)
T TIGR03215 3 KVAIIGSGNIGTDLMYKLLR---------SEHLEMVAMVGIDPESDGLARARELGVKTSAEG--VDGLLAN---PDIDIV 68 (285)
T ss_pred EEEEEeCcHHHHHHHHHHHh---------CCCcEEEEEEeCCcccHHHHHHHHCCCCEEECC--HHHHhcC---CCCCEE
Confidence 58999999999988777652 5566766 46888875 344555777766543 2344443 478999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEe--------cChhhHHHH-HHcCCCeEEcCch
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARA--------QDMMHLLDL-KKAGATDAILENA 533 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~--------~~~~~~~~l-~~~Gad~vi~p~~ 533 (663)
+.+|++.. -...+..+.+.+. +++... .-+-+.+.. ...+.+.+.+|..
T Consensus 69 ~iaTp~~~-H~e~a~~al~aGk--~VIdekPa~~~plvvp~VN~~~~~~~~~~~iv~c~~~ 126 (285)
T TIGR03215 69 FDATSAKA-HARHARLLAELGK--IVIDLTPAAIGPYVVPAVNLDEHLDAPNVNMVTCGGQ 126 (285)
T ss_pred EECCCcHH-HHHHHHHHHHcCC--EEEECCccccCCccCCCcCHHHHhcCcCCCEEEcCcH
Confidence 99999863 3445556666653 343211 111222222 3345677888874
No 375
>PRK12320 hypothetical protein; Provisional
Probab=89.90 E-value=0.91 Score=53.04 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=60.1
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|+|.| .|-+|+.+++.|. ++|++|+++|++++.. ...+..++.+|.+|+. ++++ +.++|.|+-
T Consensus 2 kILVTGAaGFIGs~La~~Ll----------~~G~~Vi~ldr~~~~~---~~~~ve~v~~Dl~d~~-l~~a-l~~~D~VIH 66 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLI----------AAGHTVSGIAQHPHDA---LDPRVDYVCASLRNPV-LQEL-AGEADAVIH 66 (699)
T ss_pred EEEEECCCCHHHHHHHHHHH----------hCCCEEEEEeCChhhc---ccCCceEEEccCCCHH-HHHH-hcCCCEEEE
Confidence 588999 5999999999997 7899999999876542 2346789999999986 4443 456888877
Q ss_pred EcCC-----HHHHHH----HHHHHHHhCC
Q 006034 484 MYTD-----KKRTIE----AVQRLRLAFP 503 (663)
Q Consensus 484 ~~~d-----d~~n~~----~~~~~r~~~~ 503 (663)
+... ...|+. +...+++.+.
T Consensus 67 LAa~~~~~~~~vNv~Gt~nLleAA~~~Gv 95 (699)
T PRK12320 67 LAPVDTSAPGGVGITGLAHVANAAARAGA 95 (699)
T ss_pred cCccCccchhhHHHHHHHHHHHHHHHcCC
Confidence 6642 224544 3344566553
No 376
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=89.89 E-value=3.8 Score=42.11 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=47.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC----CCEEEEeCChHHHHHHH-hcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG----WPFVAFDLNPSVVKESR-KLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~----~~vvvid~d~~~~~~~~-~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++.++|+|++|+.++.-|. +.+ .++.+.++++++.+.+. +.+... .+|.+.. ++++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~----------~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~----~~~a 63 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLL----------KSGALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEA----VEEA 63 (266)
T ss_pred ceEEEEccCHHHHHHHHHHH----------hcCCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHH----HhhC
Confidence 36899999999999999997 444 68999999999987444 455442 3333222 4578
Q ss_pred cEEEEEcCC
Q 006034 479 KAVMIMYTD 487 (663)
Q Consensus 479 ~~vv~~~~d 487 (663)
|.++.+..-
T Consensus 64 dvv~LavKP 72 (266)
T COG0345 64 DVVFLAVKP 72 (266)
T ss_pred CEEEEEeCh
Confidence 877777654
No 377
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.87 E-value=0.46 Score=54.67 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=53.1
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh---------------------HHHHHHHhcCCCE
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP---------------------SVVKESRKLGFPI 459 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~---------------------~~~~~~~~~~~~v 459 (663)
+..++|+|+|.|..|...+..|. ..|++|+++|.++ ++.+.+.+.|..+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~----------~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~ 204 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLR----------RMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEV 204 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEE
Confidence 35678999999999999999997 7899999999642 3455566777766
Q ss_pred EEecCC--C--HHHHHhcCCCCCcEEEEEcCCH
Q 006034 460 LYGDAS--R--PAVLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 460 i~GD~~--~--~~~L~~a~i~~a~~vv~~~~dd 488 (663)
..+... | .+.+. ..+|.++.+++..
T Consensus 205 ~~~~~~~~~~~~~~~~----~~~D~Vi~AtG~~ 233 (564)
T PRK12771 205 RLGVRVGEDITLEQLE----GEFDAVFVAIGAQ 233 (564)
T ss_pred EeCCEECCcCCHHHHH----hhCCEEEEeeCCC
Confidence 655322 1 22222 2579999998864
No 378
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=89.86 E-value=4.3 Score=39.70 Aligned_cols=94 Identities=15% Similarity=0.169 Sum_probs=56.1
Q ss_pred CCCcEEEEcCCcchHH---HHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c----CCCEEEecCCCHHHH
Q 006034 402 GSEPVVIVGFGQMGQV---LANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVL 470 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~---la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~----~~~vi~GD~~~~~~L 470 (663)
..++++-+|.|. |.. +++.+ ..+.+|+.+|.+++..+.+++ . ...++.||..+ .+
T Consensus 40 ~~~~vlDlG~Gt-G~~s~~~a~~~-----------~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~--~l 105 (198)
T PRK00377 40 KGDMILDIGCGT-GSVTVEASLLV-----------GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE--IL 105 (198)
T ss_pred CcCEEEEeCCcC-CHHHHHHHHHh-----------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh--hH
Confidence 456899999877 543 33333 345689999999998876542 2 24567788754 34
Q ss_pred HhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 471 LSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
.+. -+++|.+++..+.++..-.+-...+.+.|+-+++.-
T Consensus 106 ~~~-~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 106 FTI-NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred hhc-CCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 332 147898877544322222233444556776555543
No 379
>PLN02928 oxidoreductase family protein
Probab=89.85 E-value=0.55 Score=50.44 Aligned_cols=94 Identities=18% Similarity=0.099 Sum_probs=55.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hcCCCEEEecCCCHHHHHhcCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
..+++.|+|+|++|+.+|+.|. ..|.+|++.|++.+...... ......+.......+.|.+ =+.+
T Consensus 158 ~gktvGIiG~G~IG~~vA~~l~----------afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e-ll~~ 226 (347)
T PLN02928 158 FGKTVFILGYGAIGIELAKRLR----------PFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYE-FAGE 226 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHh----------hCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHH-HHhh
Confidence 3467999999999999999997 88999999998643211110 0000011000001122222 2457
Q ss_pred CcEEEEEcCCHH--HHHHHHHHHHHhCCCCc
Q 006034 478 PKAVMIMYTDKK--RTIEAVQRLRLAFPAIP 506 (663)
Q Consensus 478 a~~vv~~~~dd~--~n~~~~~~~r~~~~~~~ 506 (663)
+|.|+...+..+ .++.-......+.|+..
T Consensus 227 aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~ 257 (347)
T PLN02928 227 ADIVVLCCTLTKETAGIVNDEFLSSMKKGAL 257 (347)
T ss_pred CCEEEECCCCChHhhcccCHHHHhcCCCCeE
Confidence 898888887543 34444455666666633
No 380
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=89.84 E-value=2.6 Score=41.36 Aligned_cols=96 Identities=17% Similarity=0.263 Sum_probs=59.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.+|+|+|.|.+|..+++.|. ..|. +++++|.|.=.... .+.++++. +..+.+
T Consensus 20 ~~s~VlIiG~gglG~evak~La----------~~GVg~i~lvD~d~ve~sn---L~rqfl~~---------~~diG~--- 74 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLV----------LSGIGSLTILDDRTVTEED---LGAQFLIP---------AEDLGQ--- 74 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHH----------HcCCCEEEEEECCcccHhh---CCCCcccc---------HHHcCc---
Confidence 3568999999999999999997 6777 48899988533221 12222221 111111
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh--hhHHHHHHcCCCeEEcCc
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--MHLLDLKKAGATDAILEN 532 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~--~~~~~l~~~Gad~vi~p~ 532 (663)
.....++..++++||++++-+...+. ...+.+ .+.|.|++..
T Consensus 75 --------~Ka~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~--~~~dvVi~~~ 118 (197)
T cd01492 75 --------NRAEASLERLRALNPRVKVSVDTDDISEKPEEFF--SQFDVVVATE 118 (197)
T ss_pred --------hHHHHHHHHHHHHCCCCEEEEEecCccccHHHHH--hCCCEEEECC
Confidence 12234577889999998876654332 222333 3578888654
No 381
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.83 E-value=1.2 Score=46.89 Aligned_cols=132 Identities=19% Similarity=0.238 Sum_probs=73.9
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHH----HHhc----CCC-EEEecCCCHHHHHhcCC
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKE----SRKL----GFP-ILYGDASRPAVLLSAGI 475 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~----~~~~----~~~-vi~GD~~~~~~L~~a~i 475 (663)
|.|+|.|.+|..++..+. ..+. +++++|.|+++.+. +.+. +.. -+... +| ++ .+
T Consensus 1 I~IIGaG~vG~~ia~~la----------~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t-~d---~~--~l 64 (300)
T cd01339 1 ISIIGAGNVGATLAQLLA----------LKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGT-ND---YE--DI 64 (300)
T ss_pred CEEECCCHHHHHHHHHHH----------hCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEc-CC---HH--Hh
Confidence 469999999999999886 4544 99999999876421 1111 111 22211 22 22 26
Q ss_pred CCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HH-HHcCCC--eEEcCc-hH
Q 006034 476 TSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGAT--DAILEN-AE 534 (663)
Q Consensus 476 ~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Gad--~vi~p~-~~ 534 (663)
.+||.+|.+.+. | ..|.. ++..+++..|+. ++..+.||.+.- .+ +..|.+ +++--- ..
T Consensus 65 ~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~-~iIv~sNP~di~t~~~~~~s~~~~~rviGlgt~l 143 (300)
T cd01339 65 AGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNA-IVIVVTNPLDVMTYVAYKASGFPRNRVIGMAGVL 143 (300)
T ss_pred CCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHHHHHHHHHHhCCCHHHEEEecchH
Confidence 899988886631 1 23444 344456667773 444555554332 23 333443 454433 33
Q ss_pred HHHHHHHHHHHhcCCCHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~ 554 (663)
-..++-..+-+.+++++..+
T Consensus 144 ds~r~~~~la~~l~v~~~~v 163 (300)
T cd01339 144 DSARFRYFIAEELGVSVKDV 163 (300)
T ss_pred HHHHHHHHHHHHhCCCccce
Confidence 34455555556666666443
No 382
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.82 E-value=1.8 Score=47.02 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCC-------------------hHHHHHHHh------c
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLN-------------------PSVVKESRK------L 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d-------------------~~~~~~~~~------~ 455 (663)
...+|+|+|.|-.|..+++.|. ..|. +++++|.| ..+++.+.+ .
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La----------~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np 203 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLA----------AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP 203 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC
Confidence 3568999999999999999997 5666 79999998 334444332 1
Q ss_pred CCCE--EEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 456 GFPI--LYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 456 ~~~v--i~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
...+ +....++. .+.+ -++++|.||.++++.+.-..+...+++.+
T Consensus 204 ~v~v~~~~~~~~~~-~~~~-~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ 250 (376)
T PRK08762 204 DVQVEAVQERVTSD-NVEA-LLQDVDVVVDGADNFPTRYLLNDACVKLG 250 (376)
T ss_pred CCEEEEEeccCChH-HHHH-HHhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 2322 23333332 2222 14678989888888776667777788876
No 383
>PRK08818 prephenate dehydrogenase; Provisional
Probab=89.77 E-value=0.98 Score=48.83 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=42.4
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.+|.|+|. |.+|..+++.|++ ..+++|..+|.+.+. .+++ +..+++||.
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~---------~~~~~V~g~D~~d~~---------------~~~~----~~~v~~aDl 54 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRT---------RMQLEVIGHDPADPG---------------SLDP----ATLLQRADV 54 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHh---------cCCCEEEEEcCCccc---------------cCCH----HHHhcCCCE
Confidence 3568999999 9999999999982 358889999875211 1121 123567888
Q ss_pred EEEEcCCHH
Q 006034 481 VMIMYTDKK 489 (663)
Q Consensus 481 vv~~~~dd~ 489 (663)
|+++++-+.
T Consensus 55 VilavPv~~ 63 (370)
T PRK08818 55 LIFSAPIRH 63 (370)
T ss_pred EEEeCCHHH
Confidence 888887643
No 384
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=89.76 E-value=0.69 Score=47.27 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=53.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. +.+|+.+++.|. +.|++|++.++++++.+...+ . ....+.+|.+|++.++++
T Consensus 11 k~~lItGa~~~iG~~ia~~l~----------~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYA----------KAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46788876 789999999998 789999999999887655432 2 356789999999877553
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|...
T Consensus 81 ~~~~~~~id~li~~a 95 (265)
T PRK07097 81 IEKEVGVIDILVNNA 95 (265)
T ss_pred HHHhCCCCCEEEECC
Confidence 224567776554
No 385
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=89.76 E-value=1.3 Score=47.44 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=54.8
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC---ChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL---NPSVVKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~---d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
..++++|.|.|.+|...++.++ ..|.+|+++++ ++++.+.+++.|...+ |..+++.-+...-..+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak----------~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~ 239 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLR----------LRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEF 239 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCC
Confidence 3468999999999999999887 67889999997 6888888888776654 3333322111112468
Q ss_pred cEEEEEcCCHH
Q 006034 479 KAVMIMYTDKK 489 (663)
Q Consensus 479 ~~vv~~~~dd~ 489 (663)
|.++-+++.+.
T Consensus 240 d~vid~~g~~~ 250 (355)
T cd08230 240 DLIIEATGVPP 250 (355)
T ss_pred CEEEECcCCHH
Confidence 99988888653
No 386
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=89.74 E-value=22 Score=38.29 Aligned_cols=90 Identities=21% Similarity=0.229 Sum_probs=57.1
Q ss_pred chhhhhHHHHHHHhccccChhHHhhhHHHHHHH---HHHHHHHHHHHHHHHHhhcCCChHHHHHHHH-hhhhhhhHHHHH
Q 006034 266 PFRGLLLGLFFVTTGSSIDIELLFREWPNVLAL---LAGLIIIKTLIISAIGPRVGLTLQESVRIGL-LLSQGGEFAFVV 341 (663)
Q Consensus 266 ~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~---~~~~~l~K~~~~~~~~~~~g~~~r~~~~~g~-~l~~~G~~~lvl 341 (663)
++++.|+-+||..+|+.-++..+.+.+.....+ ........-......+...|.++.-.+..|- .|.-.=..+...
T Consensus 66 ~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~ 145 (404)
T COG0786 66 SLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAW 145 (404)
T ss_pred ccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHH
Confidence 568899999999999999999997764332221 1222233333334455677888888877743 333333455566
Q ss_pred HHHHHHcCCCchhh
Q 006034 342 FSLANRLGVLPLEL 355 (663)
Q Consensus 342 a~~a~~~g~i~~~~ 355 (663)
+....+.|.-+...
T Consensus 146 ~~~f~~~G~~~A~~ 159 (404)
T COG0786 146 GPTFEDLGAEGATE 159 (404)
T ss_pred HHHHHhcCCcchHH
Confidence 66777777665544
No 387
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=89.74 E-value=0.95 Score=45.01 Aligned_cols=87 Identities=22% Similarity=0.297 Sum_probs=51.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
...+++|+|+|+.|+.+++.+.. ...|++++ ++|.|+++..... .+.++ .+..+.+-+- .-.+.|.
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~--------~~~g~~ivgv~D~d~~~~~~~i-~g~~v--~~~~~l~~li--~~~~iD~ 149 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGF--------EKRGFKIVAAFDVDPEKIGTKI-GGIPV--YHIDELEEVV--KENDIEI 149 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhc--------ccCCcEEEEEEECChhhcCCEe-CCeEE--cCHHHHHHHH--HHCCCCE
Confidence 34689999999999999986431 14567766 5788887653221 12332 2222222221 1236888
Q ss_pred EEEEcCCHHHHHHHHHHHHHhC
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
++++++++... .++..+.+.+
T Consensus 150 ViIa~P~~~~~-~i~~~l~~~G 170 (213)
T PRK05472 150 GILTVPAEAAQ-EVADRLVEAG 170 (213)
T ss_pred EEEeCCchhHH-HHHHHHHHcC
Confidence 88898876543 3344455554
No 388
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=89.73 E-value=0.38 Score=56.37 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=51.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---------------------HHHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---------------------~~~~~~~~~~~vi 460 (663)
..++|+|+|.|..|...|..|. ..|++|+++|++++ ..+.+.+.|..+.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~----------~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~ 395 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLA----------RNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFE 395 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------HCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEE
Confidence 4568999999999999999998 78999999998753 2344555666655
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCC
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~d 487 (663)
.+.-...+ .+++. ..++|.++++++.
T Consensus 396 ~~~~v~~~i~~~~~-~~~~DavilAtGa 422 (654)
T PRK12769 396 LNCEVGKDISLESL-LEDYDAVFVGVGT 422 (654)
T ss_pred CCCEeCCcCCHHHH-HhcCCEEEEeCCC
Confidence 43211111 11111 1368999998875
No 389
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.70 E-value=1.3 Score=47.71 Aligned_cols=76 Identities=20% Similarity=0.282 Sum_probs=56.0
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHh-cCCCEEEecCCCHH---HHHhcCCCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRK-LGFPILYGDASRPA---VLLSAGITSP 478 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~-~~~~vi~GD~~~~~---~L~~a~i~~a 478 (663)
++++|+|.|++|...++..+ ..| .+|+++|.+++|.+.+++ .+...+.-+..+.. +++.-+=..+
T Consensus 170 ~~V~V~GaGpIGLla~~~a~----------~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAK----------LLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CEEEEECCCHHHHHHHHHHH----------HcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCC
Confidence 38999999999999888776 444 678888999999999988 66666665544321 2233333579
Q ss_pred cEEEEEcCCHH
Q 006034 479 KAVMIMYTDKK 489 (663)
Q Consensus 479 ~~vv~~~~dd~ 489 (663)
|.++-+++...
T Consensus 240 D~vie~~G~~~ 250 (350)
T COG1063 240 DVVIEAVGSPP 250 (350)
T ss_pred CEEEECCCCHH
Confidence 99999999543
No 390
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=89.67 E-value=0.67 Score=46.77 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=52.1
Q ss_pred cEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc----
Q 006034 405 PVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 405 ~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a---- 473 (663)
.++|.| .|.+|+.+++.|. ++|++|++++++++..+.+.+ .....+.+|.+|++-++++
T Consensus 3 ~vlItGa~g~lG~~l~~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 72 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALA----------AAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAA 72 (255)
T ss_pred EEEEcCCcchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHH
Confidence 578888 4899999999997 789999999999887665543 2366789999999844221
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
.....|.++-..
T Consensus 73 ~~~~~~~d~vi~~a 86 (255)
T TIGR01963 73 AAEFGGLDILVNNA 86 (255)
T ss_pred HHhcCCCCEEEECC
Confidence 134567665443
No 391
>PRK07063 short chain dehydrogenase; Provisional
Probab=89.58 E-value=0.67 Score=47.17 Aligned_cols=72 Identities=13% Similarity=0.178 Sum_probs=53.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a- 473 (663)
++++|.|. |.+|+.+++.|. ++|++|+++++++++.+...+ ....++..|.+|++-++++
T Consensus 8 k~vlVtGas~gIG~~~a~~l~----------~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 77 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFA----------REGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAV 77 (260)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHH
Confidence 46788876 789999999998 789999999999887665442 1245788999999876543
Q ss_pred -----CCCCCcEEEEEc
Q 006034 474 -----GITSPKAVMIMY 485 (663)
Q Consensus 474 -----~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 78 ~~~~~~~g~id~li~~a 94 (260)
T PRK07063 78 AAAEEAFGPLDVLVNNA 94 (260)
T ss_pred HHHHHHhCCCcEEEECC
Confidence 123567776544
No 392
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=89.53 E-value=2 Score=47.56 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=50.7
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHH----------Hhc
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL----------LSA 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L----------~~a 473 (663)
-+|-|+|.|.+|..+|..|. + +++|+++|.|+++++.+.+ |...+.- ...++.. .+
T Consensus 7 mkI~vIGlGyvGlpmA~~la----------~-~~~V~g~D~~~~~ve~l~~-G~~~~~e-~~~~~l~~~g~l~~t~~~~- 72 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG----------K-SRQVVGFDVNKKRILELKN-GVDVNLE-TTEEELREARYLKFTSEIE- 72 (425)
T ss_pred CeEEEECcCcchHHHHHHHh----------c-CCEEEEEeCCHHHHHHHHC-cCCCCCC-CCHHHHHhhCCeeEEeCHH-
Confidence 35899999999999999996 4 6999999999999999983 3322111 1111110 11
Q ss_pred CCCCCcEEEEEcCCH
Q 006034 474 GITSPKAVMIMYTDK 488 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd 488 (663)
.++++|.++++.+++
T Consensus 73 ~~~~advvii~Vptp 87 (425)
T PRK15182 73 KIKECNFYIITVPTP 87 (425)
T ss_pred HHcCCCEEEEEcCCC
Confidence 267899999988865
No 393
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=89.50 E-value=0.76 Score=46.28 Aligned_cols=72 Identities=17% Similarity=0.130 Sum_probs=52.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH--HHHHHHhc--CCCEEEecCCCHHHHHhc-----
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKL--GFPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~--~~~~~~~~--~~~vi~GD~~~~~~L~~a----- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|+++++++. ..+...+. ...++.+|.+|++.++++
T Consensus 6 k~vlItGas~gIG~~ia~~l~----------~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLA----------EAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAV 75 (248)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 56888887 789999999998 78999999998763 22333332 356889999999877521
Q ss_pred -CCCCCcEEEEEc
Q 006034 474 -GITSPKAVMIMY 485 (663)
Q Consensus 474 -~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 76 ~~~~~~d~li~~a 88 (248)
T TIGR01832 76 EEFGHIDILVNNA 88 (248)
T ss_pred HHcCCCCEEEECC
Confidence 234678777554
No 394
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=89.49 E-value=20 Score=40.23 Aligned_cols=94 Identities=16% Similarity=0.128 Sum_probs=55.2
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCE-EEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPI-LYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~v-i~GD~~~~~~L~~a~i~~a~~ 480 (663)
+++++|+|.|+-|+.+++.|++ ..+.|++++ .+|.|+.. +.++ +.|+..|- .+-..-.+.|.
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~-------~~~~g~~vVGfiDdd~~~-------g~~VpvlG~~~dL--~~~v~~~~Ide 206 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRN-------EPWLGFEVVGVYHDPKPG-------GVSNDWAGNLQQL--VEDAKAGKIHN 206 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhc-------CccCCeEEEEEEeCCccc-------cCCCCcCCCHHHH--HHHHHhCCCCE
Confidence 4679999999999999999962 002355544 46655421 2222 34544332 22223356788
Q ss_pred EEEEcCCHH--HHHHHHHHHHHhCCCCcEEEEec
Q 006034 481 VMIMYTDKK--RTIEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 481 vv~~~~dd~--~n~~~~~~~r~~~~~~~iia~~~ 512 (663)
|+++.+..+ .-..+...+++.+.+++++-...
T Consensus 207 ViIAip~~~~~~l~ell~~~~~~~v~V~ivP~l~ 240 (463)
T PRK10124 207 VYIAMSMCDGARVKKLVRQLADTTCSVLLIPDVF 240 (463)
T ss_pred EEEeCCCcchHHHHHHHHHHHHcCCeEEEecchh
Confidence 888887643 33345566777766655554443
No 395
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=89.48 E-value=1 Score=50.31 Aligned_cols=75 Identities=21% Similarity=0.230 Sum_probs=53.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH---------------------HHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------------------VKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~---------------------~~~~~~~~~~vi 460 (663)
..++++|+|.|..|...|..|. +.|++|+++|.++.. .+.+.+.+..+.
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~----------~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~ 201 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELA----------KAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFR 201 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEE
Confidence 4568999999999999999998 789999999975321 123445677777
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCC
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~d 487 (663)
.+...+.+ .+++ ...++|.++++|+.
T Consensus 202 ~~~~v~~~v~~~~-~~~~yd~viiAtGa 228 (449)
T TIGR01316 202 MNFLVGKTATLEE-LFSQYDAVFIGTGA 228 (449)
T ss_pred eCCccCCcCCHHH-HHhhCCEEEEeCCC
Confidence 77543322 1221 12368999999985
No 396
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=89.47 E-value=0.67 Score=46.83 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=53.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hcC--CCEEEecCCCHHHHHhc----
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KLG--FPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~~--~~vi~GD~~~~~~L~~a---- 473 (663)
.++|.|. |.+|+.+++.|. +.|.+++++++++++.+... +.+ ...+.+|.+|++-++++
T Consensus 2 ~~lItG~sg~iG~~la~~l~----------~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~ 71 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLA----------KDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQA 71 (254)
T ss_pred EEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 5788885 899999999997 78999999999987654443 223 56788999999877553
Q ss_pred --CCCCCcEEEEEc
Q 006034 474 --GITSPKAVMIMY 485 (663)
Q Consensus 474 --~i~~a~~vv~~~ 485 (663)
.....|.+|-..
T Consensus 72 ~~~~~~id~vi~~a 85 (254)
T TIGR02415 72 AEKFGGFDVMVNNA 85 (254)
T ss_pred HHHcCCCCEEEECC
Confidence 223567776654
No 397
>PRK00536 speE spermidine synthase; Provisional
Probab=89.46 E-value=3 Score=42.85 Aligned_cols=97 Identities=11% Similarity=0.051 Sum_probs=56.8
Q ss_pred ccCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHH-----HHHhc
Q 006034 399 NYEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPA-----VLLSA 473 (663)
Q Consensus 399 ~~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~-----~L~~a 473 (663)
.++..++|+|+|+|.-| .+-+.|+ .+ .+|+.+|.|++.++..++. .+.+.+.-.||. -+++.
T Consensus 69 ~h~~pk~VLIiGGGDGg-~~REvLk----------h~-~~v~mVeID~~Vv~~~k~~-lP~~~~~~~DpRv~l~~~~~~~ 135 (262)
T PRK00536 69 TKKELKEVLIVDGFDLE-LAHQLFK----------YD-THVDFVQADEKILDSFISF-FPHFHEVKNNKNFTHAKQLLDL 135 (262)
T ss_pred hCCCCCeEEEEcCCchH-HHHHHHC----------cC-CeeEEEECCHHHHHHHHHH-CHHHHHhhcCCCEEEeehhhhc
Confidence 45677899999999955 3444554 23 3999999999998877762 111111111111 13344
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEE
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~ 510 (663)
.-++.|++|+-...+.+... ...|.++|+--+++.
T Consensus 136 ~~~~fDVIIvDs~~~~~fy~--~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 136 DIKKYDLIICLQEPDIHKID--GLKRMLKEDGVFISV 170 (262)
T ss_pred cCCcCCEEEEcCCCChHHHH--HHHHhcCCCcEEEEC
Confidence 44689988877555554443 234556666333333
No 398
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.36 E-value=0.8 Score=50.97 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=56.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH--HHHHHh--cCCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV--VKESRK--LGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~--~~~~~~--~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.+++.|+|.|..|..+++.|. +.|++|++.|.++.. .+.+.+ .|..+..|+..+ +.+ +++
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~----------~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~-~~~-----~~~ 68 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLR----------KNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKD-ALD-----NGF 68 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCH-HHH-----hCC
Confidence 357999999999999999997 899999999987653 334444 366666665432 222 467
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
|.||....=+..|- ....||+.+
T Consensus 69 d~vv~spgi~~~~p-~~~~a~~~~ 91 (445)
T PRK04308 69 DILALSPGISERQP-DIEAFKQNG 91 (445)
T ss_pred CEEEECCCCCCCCH-HHHHHHHcC
Confidence 88877666554443 344555543
No 399
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=89.33 E-value=0.72 Score=49.40 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=52.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH-----hcCCCEEEecCCCHHHHHhcCC-C
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR-----KLGFPILYGDASRPAVLLSAGI-T 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~-----~~~~~vi~GD~~~~~~L~~a~i-~ 476 (663)
++++|.|. |-+|+.+++.|. ++|++|++++++++...... ......+.+|.+|++.++++=- .
T Consensus 5 k~ilItGatG~IG~~l~~~L~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLL----------ELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEF 74 (349)
T ss_pred CEEEEECCCChhHHHHHHHHH----------HCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhc
Confidence 57899986 889999999998 78999999998776533221 1235678999999987765311 1
Q ss_pred CCcEEEEEc
Q 006034 477 SPKAVMIMY 485 (663)
Q Consensus 477 ~a~~vv~~~ 485 (663)
+.|.+|-+.
T Consensus 75 ~~d~vih~A 83 (349)
T TIGR02622 75 KPEIVFHLA 83 (349)
T ss_pred CCCEEEECC
Confidence 457666444
No 400
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=89.27 E-value=0.43 Score=51.81 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=52.1
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc-CCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-GITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a-~i~~a~~vv~ 483 (663)
++.|+|.|..|+.+++.+. +.|++|+++|.+++..... .....+.+|.+|++.+.+. .-.+.|.++.
T Consensus 1 kililG~g~~~~~l~~aa~----------~~G~~v~~~d~~~~~~~~~--~ad~~~~~~~~d~~~l~~~~~~~~id~v~~ 68 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQ----------RLGVEVIAVDRYANAPAMQ--VAHRSYVINMLDGDALRAVIEREKPDYIVP 68 (380)
T ss_pred CEEEECCCHHHHHHHHHHH----------HcCCEEEEEeCCCCCchhh--hCceEEEcCCCCHHHHHHHHHHhCCCEEEe
Confidence 4789999999999999997 7899999999998653221 1234567888898877553 3346887765
Q ss_pred EcCC
Q 006034 484 MYTD 487 (663)
Q Consensus 484 ~~~d 487 (663)
..++
T Consensus 69 ~~e~ 72 (380)
T TIGR01142 69 EIEA 72 (380)
T ss_pred ccCc
Confidence 4443
No 401
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.25 E-value=0.74 Score=51.42 Aligned_cols=87 Identities=14% Similarity=0.099 Sum_probs=52.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
.+++.|+|+|+-|+..++.|. + |.+|++.|.+++......+.....+.|+-. ++.+ +++|.||
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~----------~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~d~vV 68 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ----------N-KYDVIVYDDLKANRDIFEELYSKNAIAALS-DSRW-----QNLDKIV 68 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh----------C-CCEEEEECCCCCchHHHHhhhcCceeccCC-hhHh-----hCCCEEE
Confidence 468999999999999999995 4 999999996654333332211122344322 2223 4678666
Q ss_pred EEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 483 IMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 483 ~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
...+=+..| -....+|+.+ ++++.
T Consensus 69 ~SPgI~~~~-p~~~~a~~~g--i~v~~ 92 (454)
T PRK01368 69 LSPGIPLTH-EIVKIAKNFN--IPITS 92 (454)
T ss_pred ECCCCCCCC-HHHHHHHHCC--Cceec
Confidence 555433333 3345556554 34543
No 402
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=89.23 E-value=0.73 Score=51.50 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=52.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH---------------------HHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---------------------VKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~---------------------~~~~~~~~~~vi 460 (663)
..++|+|+|.|..|...|..|. +.|++|+++|+++.. .+.+.+.+..+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~----------~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~ 208 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLA----------RKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIR 208 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHH----------hCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 4568999999999999999997 789999999976421 223445677776
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCC
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~d 487 (663)
.+...... .+++.. .++|.+|++|+.
T Consensus 209 ~~~~v~~~v~~~~~~-~~~d~vvlAtGa 235 (457)
T PRK11749 209 TNTEVGRDITLDELR-AGYDAVFIGTGA 235 (457)
T ss_pred eCCEECCccCHHHHH-hhCCEEEEccCC
Confidence 66542221 122222 568999999986
No 403
>PRK05650 short chain dehydrogenase; Provisional
Probab=89.23 E-value=0.77 Score=47.07 Aligned_cols=72 Identities=18% Similarity=0.118 Sum_probs=52.9
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhc----
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSA---- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a---- 473 (663)
+++|.|. |.+|+.+++.|. +.|++|+++++++++.+...+ ....++.+|.+|++.++++
T Consensus 2 ~vlVtGasggIG~~la~~l~----------~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i 71 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWA----------REGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQAC 71 (270)
T ss_pred EEEEecCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHH
Confidence 5777775 899999999998 789999999999887654332 2356688999998876542
Q ss_pred --CCCCCcEEEEEcC
Q 006034 474 --GITSPKAVMIMYT 486 (663)
Q Consensus 474 --~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 72 ~~~~~~id~lI~~ag 86 (270)
T PRK05650 72 EEKWGGIDVIVNNAG 86 (270)
T ss_pred HHHcCCCCEEEECCC
Confidence 2245677766543
No 404
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=89.20 E-value=0.73 Score=46.70 Aligned_cols=73 Identities=14% Similarity=0.084 Sum_probs=53.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----hc--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----KL--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|++.++++++.+... +. ....+.+|.+|++.++++
T Consensus 10 k~~lItGas~giG~~ia~~L~----------~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLA----------EYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEH 79 (254)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHH
Confidence 46788775 789999999998 78999999999987755443 22 245678999999877643
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 80 ~~~~~~~id~vi~~ag 95 (254)
T PRK08085 80 IEKDIGPIDVLINNAG 95 (254)
T ss_pred HHHhcCCCCEEEECCC
Confidence 1235677766553
No 405
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=89.19 E-value=0.38 Score=52.43 Aligned_cols=63 Identities=21% Similarity=0.185 Sum_probs=42.1
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGIT 476 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~ 476 (663)
-.|+|+|.|..|..+|-.|. +.|++|+++|+++.........+...+.-.+...++|++.|+.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La----------~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~ 69 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALA----------DAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVW 69 (392)
T ss_pred CCEEEECcCHHHHHHHHHHh----------cCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCch
Confidence 46999999999999999997 7899999999986421111111122333334445666666653
No 406
>PLN02735 carbamoyl-phosphate synthase
Probab=89.18 E-value=0.36 Score=59.68 Aligned_cols=89 Identities=17% Similarity=0.287 Sum_probs=64.0
Q ss_pred CCCCcEEEEcCCc--chH---------HHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHH
Q 006034 401 EGSEPVVIVGFGQ--MGQ---------VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAV 469 (663)
Q Consensus 401 ~~~~~viI~G~g~--~g~---------~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~ 469 (663)
..+++|+|+|.|. +|+ ++++.|+ +.|+++++|+.||+.+..-.+.....++-+.+-+++
T Consensus 572 ~~~kkvlilG~G~~~igq~iefd~~~v~~~~alr----------~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~v 641 (1102)
T PLN02735 572 TNKKKVLILGGGPNRIGQGIEFDYCCCHASFALQ----------DAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDV 641 (1102)
T ss_pred CCCceEEEeCccccccCcccccceeHHHHHHHHH----------HcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHH
Confidence 3567899999997 775 3568997 899999999999998653222233444445666777
Q ss_pred HHhcCCCCCcEEEEEcCCHHHHHHHHHHHH
Q 006034 470 LLSAGITSPKAVMIMYTDKKRTIEAVQRLR 499 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r 499 (663)
++-+.-+++|.|+...+.+..+..+....+
T Consensus 642 l~i~~~e~~d~Vi~~~Ggq~~l~la~~l~~ 671 (1102)
T PLN02735 642 LNVIDLERPDGIIVQFGGQTPLKLALPIQK 671 (1102)
T ss_pred HHHHHHhCCCEEEECCCchHHHHHHHHHHH
Confidence 887888899999888887665444444333
No 407
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=89.17 E-value=0.67 Score=50.95 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=53.7
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|.|.+|+.+++.|. +.| .++.+..+++++++.+.+. +. +....-+-+. .-+.++|.
T Consensus 181 ~kkvlviGaG~~a~~va~~L~----------~~g~~~I~V~nRt~~ra~~La~~~~~----~~~~~~~~l~-~~l~~aDi 245 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVT----------ALAPKQIMLANRTIEKAQKITSAFRN----ASAHYLSELP-QLIKKADI 245 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHH----------HcCCCEEEEECCCHHHHHHHHHHhcC----CeEecHHHHH-HHhccCCE
Confidence 457999999999999999997 566 4799999999999888763 21 1122222232 23678999
Q ss_pred EEEEcCCHHH
Q 006034 481 VMIMYTDKKR 490 (663)
Q Consensus 481 vv~~~~dd~~ 490 (663)
||.+|+.+..
T Consensus 246 VI~aT~a~~~ 255 (414)
T PRK13940 246 IIAAVNVLEY 255 (414)
T ss_pred EEECcCCCCe
Confidence 9999988644
No 408
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.16 E-value=0.99 Score=45.80 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC-hHHHHHHHhcCCCEEEecCCCHHHHHhc------CC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESRKLGFPILYGDASRPAVLLSA------GI 475 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d-~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i 475 (663)
+.++|.|. |.+|+.+++.|. +.|++|+++..+ ++..+.+.+.+..++..|.+|++-++++ ..
T Consensus 8 k~~lItGas~gIG~~~a~~l~----------~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFL----------REGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEF 77 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHc
Confidence 56888875 899999999998 789999888654 4455566655678899999999877653 22
Q ss_pred CCCcEEEEEc
Q 006034 476 TSPKAVMIMY 485 (663)
Q Consensus 476 ~~a~~vv~~~ 485 (663)
.+.|.+|.+.
T Consensus 78 ~~id~li~~a 87 (255)
T PRK06463 78 GRVDVLVNNA 87 (255)
T ss_pred CCCCEEEECC
Confidence 4667776544
No 409
>PRK07856 short chain dehydrogenase; Provisional
Probab=89.15 E-value=0.63 Score=47.14 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=51.7
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc------CCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA------GIT 476 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a------~i~ 476 (663)
+.++|.|. |.+|+.+++.|. +.|++|++++++++. ........++.+|.+|++.++++ ...
T Consensus 7 k~~lItGas~gIG~~la~~l~----------~~g~~v~~~~r~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFL----------AAGATVVVCGRRAPE--TVDGRPAEFHAADVRDPDQVAALVDAIVERHG 74 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCChhh--hhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56788876 689999999997 789999999998875 12223467889999999876543 124
Q ss_pred CCcEEEEEc
Q 006034 477 SPKAVMIMY 485 (663)
Q Consensus 477 ~a~~vv~~~ 485 (663)
+.|.+|-..
T Consensus 75 ~id~vi~~a 83 (252)
T PRK07856 75 RLDVLVNNA 83 (252)
T ss_pred CCCEEEECC
Confidence 568776643
No 410
>PRK12742 oxidoreductase; Provisional
Probab=89.14 E-value=0.95 Score=45.18 Aligned_cols=72 Identities=10% Similarity=0.106 Sum_probs=52.2
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHHHHHHHh-cCCCEEEecCCCHHHHHhc--CCCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSVVKESRK-LGFPILYGDASRPAVLLSA--GITSP 478 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~~~~~~~-~~~~vi~GD~~~~~~L~~a--~i~~a 478 (663)
+.++|.|. |.+|+.+++.|. ++|++|++... +++..+.+.+ .+...+.+|.+|++.+.++ ...+.
T Consensus 7 k~vlItGasggIG~~~a~~l~----------~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 7 KKVLVLGGSRGIGAAIVRRFV----------TDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CEEEEECCCChHHHHHHHHHH----------HCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCC
Confidence 56888886 899999999997 78999888765 5666665543 4677888999998866542 22356
Q ss_pred cEEEEEc
Q 006034 479 KAVMIMY 485 (663)
Q Consensus 479 ~~vv~~~ 485 (663)
|.+|-..
T Consensus 77 d~li~~a 83 (237)
T PRK12742 77 DILVVNA 83 (237)
T ss_pred cEEEECC
Confidence 7666553
No 411
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.14 E-value=0.89 Score=51.43 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=57.9
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH--HHHHHHhc--CCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRKL--GFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~--~~~~~~~~--~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.+++.|+|.|..|..+|+.|. +.|++|.+.|.++. ..+.+.+. +..+..|+.. ++.+ +++
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~----------~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~-~~~~-----~~~ 70 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCA----------RHGARLRVADTREAPPNLAALRAELPDAEFVGGPFD-PALL-----DGV 70 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHH----------HCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCc-hhHh-----cCC
Confidence 357999999999999999997 89999999997653 23445554 4445444332 4444 357
Q ss_pred cEEEEEcCCHHHH---HHHHHHHHHhCCCCcEEEEec
Q 006034 479 KAVMIMYTDKKRT---IEAVQRLRLAFPAIPIYARAQ 512 (663)
Q Consensus 479 ~~vv~~~~dd~~n---~~~~~~~r~~~~~~~iia~~~ 512 (663)
|.||+...=...| .-....||+.+ ++++.+..
T Consensus 71 d~vv~sp~I~~~~~~~~~~~~~a~~~~--i~v~~~~e 105 (498)
T PRK02006 71 DLVALSPGLSPLEAALAPLVAAARERG--IPVWGEIE 105 (498)
T ss_pred CEEEECCCCCCcccccCHHHHHHHHCC--CcEEEHHH
Confidence 8776653322222 23455566654 45665433
No 412
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=89.13 E-value=0.83 Score=47.62 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=69.0
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhc---CCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKL---GFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~---~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++++|+|.|..|+.++..|. +.|. ++.++|+|+++++.+.+. ......-...+ + +. ..++++
T Consensus 127 ~k~vlIlGaGGaaraia~aL~----------~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~-~-~~-~~~~~a 193 (284)
T PRK12549 127 LERVVQLGAGGAGAAVAHALL----------TLGVERLTIFDVDPARAAALADELNARFPAARATAGS-D-LA-AALAAA 193 (284)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEecc-c-hH-hhhCCC
Confidence 468999999999999999997 5676 799999999998887652 11111111111 1 11 134679
Q ss_pred cEEEEEcCCHHHH-HHHHHHHHHhCCCCcEEEEecChhhHH---HHHHcCCCeEEcCchHHHHHH
Q 006034 479 KAVMIMYTDKKRT-IEAVQRLRLAFPAIPIYARAQDMMHLL---DLKKAGATDAILENAETSLQL 539 (663)
Q Consensus 479 ~~vv~~~~dd~~n-~~~~~~~r~~~~~~~iia~~~~~~~~~---~l~~~Gad~vi~p~~~~~~~l 539 (663)
|.+|-+|+-...+ -..-.-...+.+...++=.+.++...+ ..++.|+ .+++-....-.|-
T Consensus 194 DiVInaTp~Gm~~~~~~~~~~~~l~~~~~v~DivY~P~~T~ll~~A~~~G~-~~~~G~~ML~~Qa 257 (284)
T PRK12549 194 DGLVHATPTGMAKHPGLPLPAELLRPGLWVADIVYFPLETELLRAARALGC-RTLDGGGMAVFQA 257 (284)
T ss_pred CEEEECCcCCCCCCCCCCCCHHHcCCCcEEEEeeeCCCCCHHHHHHHHCCC-eEecCHHHHHHHH
Confidence 9888876531100 000001122334433444555555444 4455677 4666654333333
No 413
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=89.08 E-value=0.71 Score=49.00 Aligned_cols=106 Identities=23% Similarity=0.293 Sum_probs=75.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH-HHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV-KESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~-~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
.|-|+|.|+.|+.++..=. ..|++|.+.|.+++.- .... ..++..+.+|++.+++. ++++|++
T Consensus 3 tvgIlGGGQLgrMm~~aa~----------~lG~~v~vLdp~~~~PA~~va---~~~i~~~~dD~~al~el-a~~~DVi-- 66 (375)
T COG0026 3 TVGILGGGQLGRMMALAAA----------RLGIKVIVLDPDADAPAAQVA---DRVIVAAYDDPEALREL-AAKCDVI-- 66 (375)
T ss_pred eEEEEcCcHHHHHHHHHHH----------hcCCEEEEecCCCCCchhhcc---cceeecCCCCHHHHHHH-HhhCCEE--
Confidence 5889999999999999886 7899999999988753 2222 45777888899999986 4688844
Q ss_pred EcCCHHHHHHHHHHHH---HhCCCCcEEEEecCh-hhHHHHHHcCCC
Q 006034 484 MYTDKKRTIEAVQRLR---LAFPAIPIYARAQDM-MHLLDLKKAGAT 526 (663)
Q Consensus 484 ~~~dd~~n~~~~~~~r---~~~~~~~iia~~~~~-~~~~~l~~~Gad 526 (663)
+.+-...+......+. ...|+...+...+|. ...+.|+++|+-
T Consensus 67 T~EfE~V~~~aL~~l~~~~~v~p~~~~l~~~qdR~~eK~~l~~~Gi~ 113 (375)
T COG0026 67 TYEFENVPAEALEKLAASVKVFPSPDALRIAQDRLVEKQFLDKAGLP 113 (375)
T ss_pred EEeeccCCHHHHHHHHhhcCcCCCHHHHHHHhhHHHHHHHHHHcCCC
Confidence 5554333333333333 345666666666665 455677888875
No 414
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=89.06 E-value=1.9 Score=51.06 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=35.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES 452 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~ 452 (663)
-++|.|+|.|.+|..+|..+. ..|++|+++|.|++..+..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a----------~~G~~V~l~d~~~~~l~~~ 352 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSA----------SKGVPVIMKDINQKALDLG 352 (715)
T ss_pred cceEEEECCchhHHHHHHHHH----------hCCCeEEEEeCCHHHHHHH
Confidence 468999999999999999997 7899999999999986543
No 415
>PRK07035 short chain dehydrogenase; Provisional
Probab=89.01 E-value=0.79 Score=46.35 Aligned_cols=72 Identities=10% Similarity=0.027 Sum_probs=51.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. |.+|+.+++.|. +.|++|+++++++++.+.+.+ . ....+..|.+|.+-.+++
T Consensus 9 k~vlItGas~gIG~~l~~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 78 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLA----------QQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAH 78 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 56788874 788999999998 789999999999887655443 2 245678899988865432
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|...
T Consensus 79 ~~~~~~~id~li~~a 93 (252)
T PRK07035 79 IRERHGRLDILVNNA 93 (252)
T ss_pred HHHHcCCCCEEEECC
Confidence 123567666433
No 416
>PRK08862 short chain dehydrogenase; Provisional
Probab=89.00 E-value=0.87 Score=45.66 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=51.4
Q ss_pred CcEEEEcCCc-chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGFGQ-MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~g~-~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|.++ +|+.++++|. ++|.+|+++++|+++.++..+ .+ ...+..|.+|++-.+++
T Consensus 6 k~~lVtGas~GIG~aia~~la----------~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFA----------RLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred eEEEEECCccHHHHHHHHHHH----------HCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHH
Confidence 5788888755 9999999998 789999999999988765543 22 33456788888766532
Q ss_pred ---CCC-CCcEEEEEc
Q 006034 474 ---GIT-SPKAVMIMY 485 (663)
Q Consensus 474 ---~i~-~a~~vv~~~ 485 (663)
... +-|.+|...
T Consensus 76 ~~~~~g~~iD~li~na 91 (227)
T PRK08862 76 IEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHhCCCCCEEEECC
Confidence 123 567666654
No 417
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=89.00 E-value=0.6 Score=48.29 Aligned_cols=114 Identities=13% Similarity=0.093 Sum_probs=68.5
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc--CC-CEEEecCCCHHHHHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL--GF-PILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~--~~-~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
.++++|+|.|..|+.++..|. +.|.++.+.++++++.+.+.+. .. ....-+ +.+....++|
T Consensus 117 ~k~vliiGaGg~g~aia~~L~----------~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~------~~~~~~~~~D 180 (270)
T TIGR00507 117 NQRVLIIGAGGAARAVALPLL----------KADCNVIIANRTVSKAEELAERFQRYGEIQAFS------MDELPLHRVD 180 (270)
T ss_pred CCEEEEEcCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHhhcCceEEec------hhhhcccCcc
Confidence 457999999999999999997 6788999999999988776652 11 111111 1122346799
Q ss_pred EEEEEcCCHHH-HHH-HHHHHHHhCCCCcEEEEecCh---hhHHHHHHcCCCeEEcCch
Q 006034 480 AVMIMYTDKKR-TIE-AVQRLRLAFPAIPIYARAQDM---MHLLDLKKAGATDAILENA 533 (663)
Q Consensus 480 ~vv~~~~dd~~-n~~-~~~~~r~~~~~~~iia~~~~~---~~~~~l~~~Gad~vi~p~~ 533 (663)
.+|.+|+.... +.. .......+.++..++=.+.++ ...+..++.|+. +++-..
T Consensus 181 ivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~ll~~A~~~G~~-~vdG~~ 238 (270)
T TIGR00507 181 LIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPFLAEAKSLGTK-TIDGLG 238 (270)
T ss_pred EEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHHHHHHHHCCCe-eeCCHH
Confidence 99888876311 110 000122334442333333333 344566777874 666654
No 418
>PLN02366 spermidine synthase
Probab=88.97 E-value=2.5 Score=44.59 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=48.8
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHHHHHHHh-----------cCCCEEEecCCCHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSVVKESRK-----------LGFPILYGDASRPA 468 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~~~~~~~-----------~~~~vi~GD~~~~~ 468 (663)
+..++|+++|+|. |..+.+.++ .. ..+++++|.|++.++.+++ .+..++.||+.+
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk----------~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~-- 156 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIAR----------HSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVE-- 156 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHh----------CCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHH--
Confidence 3467899999998 443333333 33 3579999999988766554 246788888753
Q ss_pred HHHhcCCCCCcEEEEEcCC
Q 006034 469 VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~d 487 (663)
.+++..=++.|.|++-..+
T Consensus 157 ~l~~~~~~~yDvIi~D~~d 175 (308)
T PLN02366 157 FLKNAPEGTYDAIIVDSSD 175 (308)
T ss_pred HHhhccCCCCCEEEEcCCC
Confidence 3444323578988775544
No 419
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.96 E-value=1 Score=46.30 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=51.6
Q ss_pred CcEEEEcCC---cchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh---HHHHHHHhc--CCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP---SVVKESRKL--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~g---~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~---~~~~~~~~~--~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|.+ -+|+.+++.|. ++|++|++.++++ +.++.+.+. ....+..|.+|++..+++
T Consensus 7 k~~lITGas~~~GIG~aia~~la----------~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMH----------REGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHH----------HCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHH
Confidence 568899987 59999999997 7899999998874 334444432 245678999998877642
Q ss_pred ----CCCCCcEEEEEc
Q 006034 474 ----GITSPKAVMIMY 485 (663)
Q Consensus 474 ----~i~~a~~vv~~~ 485 (663)
...+-|.+|-..
T Consensus 77 ~~~~~~g~iD~linnA 92 (262)
T PRK07984 77 ELGKVWPKFDGFVHSI 92 (262)
T ss_pred HHHhhcCCCCEEEECC
Confidence 234567766554
No 420
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=88.95 E-value=0.87 Score=55.41 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=54.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---------------------HHHHHHhcCCCEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---------------------VVKESRKLGFPIL 460 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---------------------~~~~~~~~~~~vi 460 (663)
..++|+|+|.|+-|...|..|. ..|++|+|+|++++ .++.+.+.|..+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~La----------r~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~ 374 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLA----------VEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFV 374 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHH----------HCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEE
Confidence 4678999999999999999997 78999999998642 2344556777665
Q ss_pred EecCCCHH-HHHhcCCCCCcEEEEEcCC
Q 006034 461 YGDASRPA-VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 461 ~GD~~~~~-~L~~a~i~~a~~vv~~~~d 487 (663)
.+.....+ .+++..-.++|+|+++|+.
T Consensus 375 ~n~~vG~dit~~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 375 KNFVVGKTATLEDLKAAGFWKIFVGTGA 402 (944)
T ss_pred EeEEeccEEeHHHhccccCCEEEEeCCC
Confidence 54322222 2333333468999999986
No 421
>PRK08324 short chain dehydrogenase; Validated
Probab=88.88 E-value=0.71 Score=54.39 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=57.7
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHHHHHhc---
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~~L~~a--- 473 (663)
.+.++|.|. |.+|+.+++.|. +.|.+|+++|++++..+...+. +..++.+|.+|++.++++
T Consensus 422 gk~vLVTGasggIG~~la~~L~----------~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLA----------AEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHH----------HCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHH
Confidence 357888895 999999999997 7899999999999887665542 566889999999876542
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
.....|.+|-+.+
T Consensus 492 ~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 492 AALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1236787777665
No 422
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=88.87 E-value=0.97 Score=43.20 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=42.0
Q ss_pred CCCcEEEEcCCcc-hHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQM-GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~-g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
..++++|+|.|.+ |..+++.|. +.|.++.+++++.+.. . ..+.+||.
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~----------~~g~~V~v~~r~~~~l---------------------~-~~l~~aDi 90 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLL----------NRNATVTVCHSKTKNL---------------------K-EHTKQADI 90 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHh----------hCCCEEEEEECCchhH---------------------H-HHHhhCCE
Confidence 4568999999996 888999997 6788899999874321 1 14567787
Q ss_pred EEEEcCCHH
Q 006034 481 VMIMYTDKK 489 (663)
Q Consensus 481 vv~~~~dd~ 489 (663)
||.+++..+
T Consensus 91 VIsat~~~~ 99 (168)
T cd01080 91 VIVAVGKPG 99 (168)
T ss_pred EEEcCCCCc
Confidence 777777643
No 423
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=88.87 E-value=8.9 Score=38.50 Aligned_cols=129 Identities=15% Similarity=0.138 Sum_probs=80.4
Q ss_pred cCCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeC-ChHH--HHHHHhcC--------------------
Q 006034 400 YEGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDL-NPSV--VKESRKLG-------------------- 456 (663)
Q Consensus 400 ~~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~-d~~~--~~~~~~~~-------------------- 456 (663)
++.++.++--.-|+.|+.++-.-+ ..|.|..+|-. |... +...+.+|
T Consensus 70 ek~~kgvithSSGNHaqAlalaAk----------~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~l 139 (323)
T KOG1251|consen 70 EKRAKGVITHSSGNHAQALALAAK----------ILGIPATIVVPKDAPICKVAATRGYGANIIFCEPTVESRESVAKDL 139 (323)
T ss_pred hhhcCceEeecCCcHHHHHHHHHH----------hcCCCeEEEecCCChHHHHHHHHhcCceEEEecCccchHHHHHHHH
Confidence 355667888889999999887654 56677555421 1111 11111222
Q ss_pred --------------CCEEEecCCC-HHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecC--hhhHHH
Q 006034 457 --------------FPILYGDASR-PAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQD--MMHLLD 519 (663)
Q Consensus 457 --------------~~vi~GD~~~-~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~--~~~~~~ 519 (663)
-.++.|.+|- .|+|++.| .-|++++..+.----.-+++.+|.+.|+++|++.... ++..+.
T Consensus 140 tee~g~~~i~Py~~p~vIaGqgTiA~ElleqVg--~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qs 217 (323)
T KOG1251|consen 140 TEETGYYLIHPYNHPSVIAGQGTIALELLEQVG--EIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQS 217 (323)
T ss_pred HHhcCcEEeCCCCCcceeeccchHHHHHHHhhC--ccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHH
Confidence 3455555553 46777766 8888888888766666688999999999999997662 333444
Q ss_pred HHHcCCCeEEcCchHHHHHHHHHHHH
Q 006034 520 LKKAGATDAILENAETSLQLGSKLLK 545 (663)
Q Consensus 520 l~~~Gad~vi~p~~~~~~~la~~~~~ 545 (663)
+.+-++-++-.|+ -+|+-+..
T Consensus 218 f~~g~I~~l~tp~-----TIADG~r~ 238 (323)
T KOG1251|consen 218 FLKGKIVHLDTPK-----TIADGVRT 238 (323)
T ss_pred HhcCCeEecCCch-----hhhhhhhh
Confidence 5555666633343 45554443
No 424
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.85 E-value=2 Score=45.77 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=53.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHH--HHhcCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAV--LLSAGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~--L~~a~i~~a~ 479 (663)
.++++|.|.|.+|+..++.++ ..|. +|+++|.++++.+.+++.|...+. |..+++. +.+.. ...|
T Consensus 170 g~~VlV~G~G~vG~~aiqlak----------~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~~-g~~D 237 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVK----------TLGAAEIVCADVSPRSLSLAREMGADKLV-NPQNDDLDHYKAEK-GYFD 237 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCcEEEEEeCCHHHHHHHHHcCCcEEe-cCCcccHHHHhccC-CCCC
Confidence 457999999999999999886 6777 588999999999999888865433 3333221 11111 2489
Q ss_pred EEEEEcCCHH
Q 006034 480 AVMIMYTDKK 489 (663)
Q Consensus 480 ~vv~~~~dd~ 489 (663)
.++-+++...
T Consensus 238 ~vid~~G~~~ 247 (343)
T PRK09880 238 VSFEVSGHPS 247 (343)
T ss_pred EEEECCCCHH
Confidence 8888888643
No 425
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=88.83 E-value=0.59 Score=53.20 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=52.4
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+|+.|. ..|.+|.+.|+.... +...+.+.... .+ |+++ ++++|.+
T Consensus 137 ~gktvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~-~~~~~~g~~~~----~~---l~el-l~~aDvV 197 (525)
T TIGR01327 137 YGKTLGVIGLGRIGSIVAKRAK----------AFGMKVLAYDPYISP-ERAEQLGVELV----DD---LDEL-LARADFI 197 (525)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCh-hHHHhcCCEEc----CC---HHHH-HhhCCEE
Confidence 3467999999999999999997 789999999974221 12223332211 12 2221 3577888
Q ss_pred EEEcCCHHHHHHH--HHHHHHhCCCC
Q 006034 482 MIMYTDKKRTIEA--VQRLRLAFPAI 505 (663)
Q Consensus 482 v~~~~dd~~n~~~--~~~~r~~~~~~ 505 (663)
++..+..+++..+ ......+.|..
T Consensus 198 ~l~lPlt~~T~~li~~~~l~~mk~ga 223 (525)
T TIGR01327 198 TVHTPLTPETRGLIGAEELAKMKKGV 223 (525)
T ss_pred EEccCCChhhccCcCHHHHhcCCCCe
Confidence 8877765443332 34455555553
No 426
>PRK06125 short chain dehydrogenase; Provisional
Probab=88.79 E-value=0.95 Score=46.04 Aligned_cols=72 Identities=13% Similarity=0.106 Sum_probs=53.9
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh-------cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK-------LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~-------~~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|. +.+|+.+++.|. +.|.+|+++++++++.+.+.+ ....++..|.+|++-++++
T Consensus 8 k~vlItG~~~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~ 77 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFA----------AEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAA 77 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHH
Confidence 56788887 689999999998 789999999999887665432 1356788999998866542
Q ss_pred CCCCCcEEEEEc
Q 006034 474 GITSPKAVMIMY 485 (663)
Q Consensus 474 ~i~~a~~vv~~~ 485 (663)
...+.|.+|.+.
T Consensus 78 ~~g~id~lv~~a 89 (259)
T PRK06125 78 EAGDIDILVNNA 89 (259)
T ss_pred HhCCCCEEEECC
Confidence 234677776654
No 427
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.78 E-value=5.7 Score=41.93 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=84.8
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHH--HHHHHhcCC-CEEEecCCCHHHHHhcCCCCC
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSV--VKESRKLGF-PILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~--~~~~~~~~~-~vi~GD~~~~~~L~~a~i~~a 478 (663)
+|.|+|. |++|..++-.|. ..+ .+++++|.+..+ +.++.+... .-+++-..+.+.. ...++|
T Consensus 2 KI~IIGaaG~VG~~~a~~l~----------~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y--~~~~da 69 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLK----------LNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELK--KALKGA 69 (310)
T ss_pred EEEEECCCCHHHHHHHHHHH----------hCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchH--HhcCCC
Confidence 5899999 999999999886 444 579999998111 122222212 2344321121122 356899
Q ss_pred cEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhH-------HHHHHcCCC--eEEcCchH
Q 006034 479 KAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHL-------LDLKKAGAT--DAILENAE 534 (663)
Q Consensus 479 ~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~-------~~l~~~Gad--~vi~p~~~ 534 (663)
|.+|++.+. | +.|.. ++...++.+|+ -++..+.||.+. ...+..|-+ +|+--..+
T Consensus 70 DivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~-a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~L 148 (310)
T cd01337 70 DVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPK-ALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTL 148 (310)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeech
Confidence 988887654 1 23443 44556677888 466667777643 223444554 67766666
Q ss_pred HHHHHHHHHHHhcCCCHHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~~ 555 (663)
-+.++-..+-+.+++++..++
T Consensus 149 Ds~R~~~~la~~l~v~~~~V~ 169 (310)
T cd01337 149 DVVRANTFVAELLGLDPAKVN 169 (310)
T ss_pred HHHHHHHHHHHHhCcCHHHEE
Confidence 666777788888888875544
No 428
>PRK09242 tropinone reductase; Provisional
Probab=88.77 E-value=0.8 Score=46.52 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=53.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.|. |.+|+.+++.|. ++|++|++++++++..+...+ .....+.+|.+|++-++++
T Consensus 10 k~~lItGa~~gIG~~~a~~l~----------~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~ 79 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFL----------GLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAIL 79 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHH
Confidence 46777775 799999999997 789999999999988665543 1245678999998755331
Q ss_pred -----CCCCCcEEEEEcC
Q 006034 474 -----GITSPKAVMIMYT 486 (663)
Q Consensus 474 -----~i~~a~~vv~~~~ 486 (663)
...+.|.++.+.+
T Consensus 80 ~~~~~~~g~id~li~~ag 97 (257)
T PRK09242 80 DWVEDHWDGLHILVNNAG 97 (257)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 1245677766664
No 429
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=88.73 E-value=0.98 Score=47.78 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=53.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------cCCCEEEecCCCHHHHHhcC-
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------LGFPILYGDASRPAVLLSAG- 474 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------~~~~vi~GD~~~~~~L~~a~- 474 (663)
.++++|.|. |-+|+.+++.|. +.|++|+++++++++.+.+.+ ....++.+|.+|++-.+++-
T Consensus 6 ~k~vlVTGas~gIG~~~a~~L~----------~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 75 (322)
T PRK07453 6 KGTVIITGASSGVGLYAAKALA----------KRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVD 75 (322)
T ss_pred CCEEEEEcCCChHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHH
Confidence 456888876 789999999997 789999999999887665443 13567889999988765431
Q ss_pred -----CCCCcEEEEE
Q 006034 475 -----ITSPKAVMIM 484 (663)
Q Consensus 475 -----i~~a~~vv~~ 484 (663)
..+.|.+|-.
T Consensus 76 ~~~~~~~~iD~li~n 90 (322)
T PRK07453 76 DFRALGKPLDALVCN 90 (322)
T ss_pred HHHHhCCCccEEEEC
Confidence 1246766643
No 430
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=88.72 E-value=0.71 Score=50.19 Aligned_cols=78 Identities=12% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.+|.|+|. |..|+.+.+.|.+ .++.+++.+..+++.-+.+.+..-....+|..+.+-++.+.++++|.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~---------hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~Dv 107 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLAN---------HPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDA 107 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHh---------CCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCE
Confidence 4568999998 8999999999983 56889999988765544444433444456665555555555678999
Q ss_pred EEEEcCCH
Q 006034 481 VMIMYTDK 488 (663)
Q Consensus 481 vv~~~~dd 488 (663)
++.+++++
T Consensus 108 Vf~Alp~~ 115 (381)
T PLN02968 108 VFCCLPHG 115 (381)
T ss_pred EEEcCCHH
Confidence 99999885
No 431
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=88.71 E-value=0.65 Score=57.47 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCcc-----------hHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHH
Q 006034 402 GSEPVVIVGFGQM-----------GQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVL 470 (663)
Q Consensus 402 ~~~~viI~G~g~~-----------g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L 470 (663)
.-++|+|+|.|.. |.++++.|+ +.|++|+++|.||.....-... ....+-++.+.+.+
T Consensus 6 ~~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~----------e~G~~vi~v~~np~~~~~d~~~-ad~~y~ep~~~e~l 74 (1068)
T PRK12815 6 DIQKILVIGSGPIVIGQAAEFDYSGTQACLALK----------EEGYQVVLVNPNPATIMTDPAP-ADTVYFEPLTVEFV 74 (1068)
T ss_pred CCCEEEEECCCcchhcchhhhhhHHHHHHHHHH----------HcCCEEEEEeCCcchhhcCccc-CCeeEECCCCHHHH
Confidence 4568999999986 778999998 8999999999999764321111 22334566667766
Q ss_pred Hh-cCCCCCcEEEEEcCCH-HHHHHHHH----HHHHhC-----CCCcEEEEecChh-hHHHHHHcCCCe
Q 006034 471 LS-AGITSPKAVMIMYTDK-KRTIEAVQ----RLRLAF-----PAIPIYARAQDMM-HLLDLKKAGATD 527 (663)
Q Consensus 471 ~~-a~i~~a~~vv~~~~dd-~~n~~~~~----~~r~~~-----~~~~iia~~~~~~-~~~~l~~~Gad~ 527 (663)
.+ +.-++.|+++.+.+.+ ..|....+ .+++.+ |+...+..++|.. ..+.+++.|+..
T Consensus 75 ~~ii~~e~~D~Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIpv 143 (1068)
T PRK12815 75 KRIIAREKPDALLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEPV 143 (1068)
T ss_pred HHHHHHhCcCEEEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcCC
Confidence 55 3556889887766543 34433211 122332 3333444555543 456778888863
No 432
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.69 E-value=0.88 Score=47.87 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++-|+|+|++|+.+++.|. ..|.+|++.|++... .+.... ..+ +++ -++++|.+
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~----------afG~~V~~~~r~~~~------~~~~~~---~~~---l~e-ll~~aDiv 177 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAK----------AFGMNIYAYTRSYVN------DGISSI---YME---PED-IMKKSDFV 177 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHH----------HCCCEEEEECCCCcc------cCcccc---cCC---HHH-HHhhCCEE
Confidence 3467999999999999999986 789999999987432 122111 112 222 13678988
Q ss_pred EEEcCCHHHH--HHHHHHHHHhCCCCcEE
Q 006034 482 MIMYTDKKRT--IEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 482 v~~~~dd~~n--~~~~~~~r~~~~~~~ii 508 (663)
++..+.++++ +.-......+.|+..+|
T Consensus 178 ~~~lp~t~~T~~li~~~~l~~mk~ga~lI 206 (303)
T PRK06436 178 LISLPLTDETRGMINSKMLSLFRKGLAII 206 (303)
T ss_pred EECCCCCchhhcCcCHHHHhcCCCCeEEE
Confidence 8888876544 33344556666664333
No 433
>PRK05865 hypothetical protein; Provisional
Probab=88.68 E-value=3.9 Score=49.04 Aligned_cols=109 Identities=15% Similarity=0.083 Sum_probs=71.8
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+++|.|. |.+|+.+++.|. +.|++|++++++++.. ...+..++.+|.+|++.++++ ++++|.||-
T Consensus 2 kILVTGATGfIGs~La~~Ll----------~~G~~Vv~l~R~~~~~---~~~~v~~v~gDL~D~~~l~~a-l~~vD~VVH 67 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLL----------SQGHEVVGIARHRPDS---WPSSADFIAADIRDATAVESA-MTGADVVAH 67 (854)
T ss_pred EEEEECCCCHHHHHHHHHHH----------HCcCEEEEEECCchhh---cccCceEEEeeCCCHHHHHHH-HhCCCEEEE
Confidence 4889986 999999999997 7899999999875431 123578899999999888654 356888877
Q ss_pred EcCC----HHHHHH----HHHHHHHhCCCCcEEEEecCh---hhHHHHHHcCCCeEE
Q 006034 484 MYTD----KKRTIE----AVQRLRLAFPAIPIYARAQDM---MHLLDLKKAGATDAI 529 (663)
Q Consensus 484 ~~~d----d~~n~~----~~~~~r~~~~~~~iia~~~~~---~~~~~l~~~Gad~vi 529 (663)
+... .+.|+. ++..+++.+.+ ++ +-+.+. .-.+.+++.|.+.++
T Consensus 68 lAa~~~~~~~vNv~GT~nLLeAa~~~gvk-r~-V~iSS~~K~aaE~ll~~~gl~~vI 122 (854)
T PRK05865 68 CAWVRGRNDHINIDGTANVLKAMAETGTG-RI-VFTSSGHQPRVEQMLADCGLEWVA 122 (854)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHcCCC-eE-EEECCcHHHHHHHHHHHcCCCEEE
Confidence 6532 234544 33344554433 33 333332 334455666777643
No 434
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=88.66 E-value=0.91 Score=46.05 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=52.6
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~--~~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.|. +.+|+.+++.|. +.|.++++++++++..+.+.+ . ...++..|.+|++.++++
T Consensus 12 k~vlVtG~s~gIG~~la~~l~----------~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~ 81 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFA----------TAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADF 81 (255)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 56777765 788999999998 789999999999887665432 2 345778999999876542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.++-+.
T Consensus 82 ~~~~~~~~d~li~~a 96 (255)
T PRK06113 82 ALSKLGKVDILVNNA 96 (255)
T ss_pred HHHHcCCCCEEEECC
Confidence 224567776654
No 435
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=88.65 E-value=0.08 Score=57.50 Aligned_cols=108 Identities=21% Similarity=0.361 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCcHHHHHHHhhhhccCCchh--hHHHhhhhchhhhhHHHHHHHhccccChhHHhhhHHHHHHHHHHHHHH
Q 006034 228 GTSLLTQKLGFSDTLGAFLAGAILAETNFR--TQIEADIRPFRGLLLGLFFVTTGSSIDIELLFREWPNVLALLAGLIII 305 (663)
Q Consensus 228 ~~~~l~~~~G~s~~lgAflaGl~l~~~~~~--~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~~~~~l~~~~~~~l~ 305 (663)
....+.+.++++..++-.++|++++..... +.-....+.+.++..++.....|.++|.+.+.+++...+......++.
T Consensus 10 ~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~~~ 89 (380)
T PF00999_consen 10 VAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGFLL 89 (380)
T ss_dssp --------------------------------------S-SSHHHHS--SSHHHHTTGGGG-------------------
T ss_pred HHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccceeee
Confidence 344478999999999999999999987433 111456666788888888889999999999987766555444444444
Q ss_pred HHHH-HHHHHh---hcCCChHHHHHHHHhhhhhh
Q 006034 306 KTLI-ISAIGP---RVGLTLQESVRIGLLLSQGG 335 (663)
Q Consensus 306 K~~~-~~~~~~---~~g~~~r~~~~~g~~l~~~G 335 (663)
-.+. .+.... ..|+++.+++..|..+++-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 90 PFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp ------------------------TTHHHHTT--
T ss_pred hhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 4444 333332 47889999999998776654
No 436
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.64 E-value=1.3 Score=47.37 Aligned_cols=72 Identities=18% Similarity=0.354 Sum_probs=57.2
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc----------
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA---------- 473 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a---------- 473 (663)
.++-|+|.|-+|.-+|-.+. ..|.+|+-+|.|+++++.+.+ |...+. ++.++++++++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA----------~~G~~ViG~DIn~~~Vd~ln~-G~~~i~-e~~~~~~v~~~v~~g~lraTt 77 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFA----------SAGFKVIGVDINQKKVDKLNR-GESYIE-EPDLDEVVKEAVESGKLRATT 77 (436)
T ss_pred eEEEEEccccccHHHHHHHH----------HcCCceEeEeCCHHHHHHHhC-Ccceee-cCcHHHHHHHHHhcCCceEec
Confidence 67999999999999999997 899999999999999998876 333333 77777766543
Q ss_pred ---CCCCCcEEEEEcCC
Q 006034 474 ---GITSPKAVMIMYTD 487 (663)
Q Consensus 474 ---~i~~a~~vv~~~~d 487 (663)
.++.||+++++.+.
T Consensus 78 d~~~l~~~dv~iI~VPT 94 (436)
T COG0677 78 DPEELKECDVFIICVPT 94 (436)
T ss_pred ChhhcccCCEEEEEecC
Confidence 23388988888753
No 437
>PRK07062 short chain dehydrogenase; Provisional
Probab=88.62 E-value=0.88 Score=46.43 Aligned_cols=73 Identities=11% Similarity=0.029 Sum_probs=53.4
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c----CCCEEEecCCCHHHHHhc-
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVLLSA- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~----~~~vi~GD~~~~~~L~~a- 473 (663)
+.++|.|. +.+|+.+++.|. ++|++|+++++++++.+...+ . ....+..|.+|++-.+++
T Consensus 9 k~~lItGas~giG~~ia~~l~----------~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 78 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLL----------EAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFA 78 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHH
Confidence 56788887 679999999997 789999999999887655432 1 234678999999876542
Q ss_pred -----CCCCCcEEEEEcC
Q 006034 474 -----GITSPKAVMIMYT 486 (663)
Q Consensus 474 -----~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 79 ~~~~~~~g~id~li~~Ag 96 (265)
T PRK07062 79 AAVEARFGGVDMLVNNAG 96 (265)
T ss_pred HHHHHhcCCCCEEEECCC
Confidence 2346787766543
No 438
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=88.59 E-value=4.9 Score=42.09 Aligned_cols=116 Identities=15% Similarity=0.123 Sum_probs=70.6
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHH--HHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSV--VKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~--~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
-++.|+|.|++|+.....+.+ .++.+++ ++|.|++. .+..++.|....+.| -++.+++...++.|.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~---------~~~velvAVvdid~es~gla~A~~~Gi~~~~~~--ie~LL~~~~~~dIDi 73 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILR---------SEHLEPGAMVGIDPESDGLARARRLGVATSAEG--IDGLLAMPEFDDIDI 73 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhc---------CCCcEEEEEEeCChhhHHHHHHHHcCCCcccCC--HHHHHhCcCCCCCCE
Confidence 469999999999998877762 4566655 66888864 344555666554421 244555445577899
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEecCh--------hhHHH-HHHcCCCeEEcCch
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDM--------MHLLD-LKKAGATDAILENA 533 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~--------~~~~~-l~~~Gad~vi~p~~ 533 (663)
|+.+|+++ .....+..+.+.+. .++....-. -|.+. ....+.+.+.+|..
T Consensus 74 Vf~AT~a~-~H~e~a~~a~eaGk--~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia~p~~ 132 (302)
T PRK08300 74 VFDATSAG-AHVRHAAKLREAGI--RAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVTCGGQ 132 (302)
T ss_pred EEECCCHH-HHHHHHHHHHHcCC--eEEECCccccCCcccCcCCHHHHhcccCCCEEECccH
Confidence 99999875 44455555666542 333322111 12222 23345778889985
No 439
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=88.59 E-value=0.36 Score=39.75 Aligned_cols=34 Identities=26% Similarity=0.398 Sum_probs=30.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 448 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~ 448 (663)
+++|+|.|..|-.+|..|. +.+.+|+++++++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~----------~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALA----------ELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHH----------HTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHH----------HhCcEEEEEeccchh
Confidence 5899999999999999998 789999999987764
No 440
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=88.56 E-value=0.26 Score=43.58 Aligned_cols=87 Identities=17% Similarity=0.139 Sum_probs=54.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecC------CC-HHHHHhcCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDA------SR-PAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~------~~-~~~L~~a~i 475 (663)
++++|+|-|.++..+++.++ +.|+++++|..|++....-.+. +..+..++. .| +++++-+.-
T Consensus 3 kkvLIanrGeia~r~~ra~r----------~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~ 72 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALR----------ELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARK 72 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHH----------HTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHH----------HhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhh
Confidence 57999999999999999998 8999999999999986544432 233333422 22 233444444
Q ss_pred CCCcEEEEEcCCHHHHHHHHHHHHH
Q 006034 476 TSPKAVMIMYTDKKRTIEAVQRLRL 500 (663)
Q Consensus 476 ~~a~~vv~~~~dd~~n~~~~~~~r~ 500 (663)
+.++++.-..+--.+|...+....+
T Consensus 73 ~g~~~i~pGyg~lse~~~fa~~~~~ 97 (110)
T PF00289_consen 73 EGADAIHPGYGFLSENAEFAEACED 97 (110)
T ss_dssp TTESEEESTSSTTTTHHHHHHHHHH
T ss_pred hcCcccccccchhHHHHHHHHHHHH
Confidence 4555554444444455554444443
No 441
>PRK06197 short chain dehydrogenase; Provisional
Probab=88.56 E-value=1.5 Score=45.95 Aligned_cols=73 Identities=16% Similarity=0.039 Sum_probs=53.4
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH----h----cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR----K----LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~----~----~~~~vi~GD~~~~~~L~~a 473 (663)
.+.++|.|. |-+|+.+++.|. +.|++|+++++++++.+... + ....++.+|.+|++..+++
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~----------~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~ 85 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALA----------AKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAA 85 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHH
Confidence 356788876 899999999997 78999999999987754432 1 1355788999999876543
Q ss_pred ------CCCCCcEEEEEc
Q 006034 474 ------GITSPKAVMIMY 485 (663)
Q Consensus 474 ------~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 86 ~~~~~~~~~~iD~li~nA 103 (306)
T PRK06197 86 ADALRAAYPRIDLLINNA 103 (306)
T ss_pred HHHHHhhCCCCCEEEECC
Confidence 234567776554
No 442
>PRK06841 short chain dehydrogenase; Provisional
Probab=88.55 E-value=1.1 Score=45.35 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=54.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc-----
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA----- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a----- 473 (663)
.++++|.|. |.+|+.+++.|. ++|++|++.+++++..+...+ .....+..|.+|++.++++
T Consensus 15 ~k~vlItGas~~IG~~la~~l~----------~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 84 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFA----------AKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVI 84 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHH
Confidence 357888885 999999999997 789999999998875433332 2345788999999876543
Q ss_pred -CCCCCcEEEEEcC
Q 006034 474 -GITSPKAVMIMYT 486 (663)
Q Consensus 474 -~i~~a~~vv~~~~ 486 (663)
...+.|.+|-..+
T Consensus 85 ~~~~~~d~vi~~ag 98 (255)
T PRK06841 85 SAFGRIDILVNSAG 98 (255)
T ss_pred HHhCCCCEEEECCC
Confidence 1235677766553
No 443
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=88.54 E-value=0.94 Score=48.07 Aligned_cols=87 Identities=18% Similarity=0.324 Sum_probs=57.1
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+.+-|+|+|++|+.+|+.++ .-|.++..-|+.+. -+...+ ..+-+-+ .++.|+ ++|.+
T Consensus 145 ~gktvGIiG~GrIG~avA~r~~----------~Fgm~v~y~~~~~~-~~~~~~--~~~~y~~--l~ell~-----~sDii 204 (324)
T COG1052 145 RGKTLGIIGLGRIGQAVARRLK----------GFGMKVLYYDRSPN-PEAEKE--LGARYVD--LDELLA-----ESDII 204 (324)
T ss_pred CCCEEEEECCCHHHHHHHHHHh----------cCCCEEEEECCCCC-hHHHhh--cCceecc--HHHHHH-----hCCEE
Confidence 3567999999999999999997 78899999998875 111111 2222223 444554 56655
Q ss_pred EEEcCC--HHHHHHHHHHHHHhCCCCcEE
Q 006034 482 MIMYTD--KKRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 482 v~~~~d--d~~n~~~~~~~r~~~~~~~ii 508 (663)
.+..+- +..++.-....+++.+.+.+|
T Consensus 205 ~l~~Plt~~T~hLin~~~l~~mk~ga~lV 233 (324)
T COG1052 205 SLHCPLTPETRHLINAEELAKMKPGAILV 233 (324)
T ss_pred EEeCCCChHHhhhcCHHHHHhCCCCeEEE
Confidence 555543 455666667777777775444
No 444
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=88.49 E-value=0.94 Score=47.81 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=52.1
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH---HHh-----cCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE---SRK-----LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~---~~~-----~~~~vi~GD~~~~~~L~~a~ 474 (663)
+.++|.|. |-+|+.+++.|. +.|++|+++.+|++..+. ..+ ....++.||.+|++.++++
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~- 74 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLL----------LRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQA- 74 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHH----------HCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHH-
Confidence 57889985 999999999997 789999987777654322 211 2467889999999988764
Q ss_pred CCCCcEEEEEc
Q 006034 475 ITSPKAVMIMY 485 (663)
Q Consensus 475 i~~a~~vv~~~ 485 (663)
++++|.|+-+.
T Consensus 75 ~~~~d~vih~A 85 (322)
T PLN02986 75 IEGCDAVFHTA 85 (322)
T ss_pred HhCCCEEEEeC
Confidence 33577776554
No 445
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.49 E-value=1.2 Score=45.66 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=48.8
Q ss_pred CcEEEEcCCc---chHHHHHHhcccccCCCCCCCCCCCEEEEeCChH---HHHHHHhc-C-CCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGFGQ---MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS---VVKESRKL-G-FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~g~---~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~---~~~~~~~~-~-~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|.++ +|+.+++.|. ++|++|++.+++++ .++.+.+. + ..++..|.+|++-.+++
T Consensus 9 k~~lITGas~~~GIG~a~a~~la----------~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~ 78 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAK----------KHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFD 78 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHH----------HcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHH
Confidence 4678889974 9999999997 78999999988743 34444332 3 23567999998766532
Q ss_pred ----CCCCCcEEEEE
Q 006034 474 ----GITSPKAVMIM 484 (663)
Q Consensus 474 ----~i~~a~~vv~~ 484 (663)
...+.|.+|..
T Consensus 79 ~~~~~~g~iDilVnn 93 (260)
T PRK06603 79 DIKEKWGSFDFLLHG 93 (260)
T ss_pred HHHHHcCCccEEEEc
Confidence 22456666543
No 446
>PRK00811 spermidine synthase; Provisional
Probab=88.48 E-value=3.1 Score=43.34 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=49.8
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh------------cCCCEEEecCCCHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK------------LGFPILYGDASRPA 468 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~------------~~~~vi~GD~~~~~ 468 (663)
+..++|+++|+|. |....+.++ .....+|++||.|++.++.+++ ....++.||+.+
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~---------~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~-- 142 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLK---------HPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK-- 142 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHc---------CCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH--
Confidence 3457899999987 544444554 1234589999999998877664 235678898864
Q ss_pred HHHhcCCCCCcEEEEEcCC
Q 006034 469 VLLSAGITSPKAVMIMYTD 487 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~d 487 (663)
.+++ .-++.|.|++-..|
T Consensus 143 ~l~~-~~~~yDvIi~D~~d 160 (283)
T PRK00811 143 FVAE-TENSFDVIIVDSTD 160 (283)
T ss_pred HHhh-CCCcccEEEECCCC
Confidence 3443 34578988775443
No 447
>COG0679 Predicted permeases [General function prediction only]
Probab=88.45 E-value=36 Score=35.88 Aligned_cols=135 Identities=17% Similarity=0.177 Sum_probs=87.8
Q ss_pred CcHHHHHHHhhhhccCC--chhhHHHhhhhchhhhhHHHHHHHhccccChhHHhhh-HHHHHHHHHHHHHHHHHHHHHHH
Q 006034 238 FSDTLGAFLAGAILAET--NFRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFRE-WPNVLALLAGLIIIKTLIISAIG 314 (663)
Q Consensus 238 ~s~~lgAflaGl~l~~~--~~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~~-~~~~l~~~~~~~l~K~~~~~~~~ 314 (663)
.+|.+=|++.|+.+... +..+.+.+.++.+.+...|+=.+.+|+.++....... ++.+......-++..++..+...
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888877753 4556777888888999999999999999999555433 33333333335777888888888
Q ss_pred hhcCCChHHHHHHH-HhhhhhhhHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHhhhHHHHH
Q 006034 315 PRVGLTLQESVRIG-LLLSQGGEFAFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPLLNE 375 (663)
Q Consensus 315 ~~~g~~~r~~~~~g-~~l~~~G~~~lvla~~a~~~g~i~~~~~~~lv~~vvlt~ii~pi~~~ 375 (663)
...|++..+....= ....|.+....+++ .+.+.-.+...+.+.....++.+..|....
T Consensus 247 ~~~~l~~~~~~v~vl~~a~P~A~~~~v~a---~~~~~~~~laa~~i~ist~ls~~t~p~~~~ 305 (311)
T COG0679 247 KLLGLSGLALQVLVLLSAMPTAVNAYVLA---RQYGGDPRLAASTILLSTLLSLLTLPLLIL 305 (311)
T ss_pred HHcCCChHHHHHHHHHhhCcHHhHHHHHH---HHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888766552111 12356665555544 445555555555555666666666655543
No 448
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=88.41 E-value=1.7 Score=53.72 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCcc--hH---------HHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC-HH
Q 006034 401 EGSEPVVIVGFGQM--GQ---------VLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR-PA 468 (663)
Q Consensus 401 ~~~~~viI~G~g~~--g~---------~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~ 468 (663)
..+++|+|+|.|.. |+ .+++.|+ +.|++++++|.||+.+..-.+..... +-++.+ ++
T Consensus 552 ~~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~----------~~G~~vI~v~~npetvs~d~~~~D~l-y~ep~~~e~ 620 (1050)
T TIGR01369 552 TDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALR----------ELGYETIMINYNPETVSTDYDTSDRL-YFEPLTFED 620 (1050)
T ss_pred CCCceEEEecCcccccccccccchHHHHHHHHHH----------hCCCEEEEEecCCccccccccccceE-EEecCCHHH
Confidence 34568999999864 55 6699997 89999999999998753211111122 234433 44
Q ss_pred HHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE-------EecC-hhhHHHHHHcCCC
Q 006034 469 VLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA-------RAQD-MMHLLDLKKAGAT 526 (663)
Q Consensus 469 ~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia-------~~~~-~~~~~~l~~~Gad 526 (663)
+++-+.-++.|.++...++. .....+..+.+.+ ++++. +++| ....+.++++|+.
T Consensus 621 vl~i~~~e~idgVI~~~gg~-~~~~la~~le~~G--i~i~G~s~~~i~~~~DK~~f~~lL~~~GIp 683 (1050)
T TIGR01369 621 VMNIIELEKPEGVIVQFGGQ-TPLNLAKALEEAG--VPILGTSPESIDRAEDREKFSELLDELGIP 683 (1050)
T ss_pred HHHHHhhcCCCEEEEccCcH-hHHHHHHHHHHCC--CcEECCCHHHHHHHCCHHHHHHHHHHCCcC
Confidence 55556667889887766653 3333444444443 33332 2333 2345567888876
No 449
>PRK08263 short chain dehydrogenase; Provisional
Probab=88.37 E-value=1.1 Score=46.07 Aligned_cols=73 Identities=15% Similarity=0.054 Sum_probs=55.2
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh---cCCCEEEecCCCHHHHHhc------
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK---LGFPILYGDASRPAVLLSA------ 473 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~---~~~~vi~GD~~~~~~L~~a------ 473 (663)
+.++|.| .|.+|+.+++.|. ++|++|++++++++..+.+.+ .....+.+|.+|++.++++
T Consensus 4 k~vlItGasg~iG~~~a~~l~----------~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAAL----------ERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVE 73 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHH
Confidence 3577877 4899999999997 789999999999988766554 2466789999999877542
Q ss_pred CCCCCcEEEEEcC
Q 006034 474 GITSPKAVMIMYT 486 (663)
Q Consensus 474 ~i~~a~~vv~~~~ 486 (663)
.....|.+|-+.+
T Consensus 74 ~~~~~d~vi~~ag 86 (275)
T PRK08263 74 HFGRLDIVVNNAG 86 (275)
T ss_pred HcCCCCEEEECCC
Confidence 1245687776653
No 450
>PRK04972 putative transporter; Provisional
Probab=88.34 E-value=4.9 Score=46.05 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=47.3
Q ss_pred ccCchhHHHHHHHHHHhccCCCcCCchhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHH
Q 006034 5 ILCRSQILGFFFAGIVLNQLGIIRNLTDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLST 76 (663)
Q Consensus 5 rl~lP~ivg~ilaGillGp~glv~~~~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~ 76 (663)
.+++-...|-+++|+++|.+|.- .-..+.++|+.+++|.+|++.-++.+...++..+.....+++++.
T Consensus 34 ~~~LG~~~g~L~vgl~~g~~~~~----~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~ 101 (558)
T PRK04972 34 SIQLGNSIGVLVVSLLLGQQHFS----INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVG 101 (558)
T ss_pred eEecCcchHHHHHHHHHHhCCCC----CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555666889999999987742 122356899999999999999998776665554444444444433
No 451
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=88.31 E-value=0.59 Score=49.43 Aligned_cols=84 Identities=14% Similarity=0.215 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+.+.|+|+|++|+.+|+.+. ..|.+|...|+..... +.++. -.+=+++ ++++|.|
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~----------~fgm~V~~~d~~~~~~----~~~~~----~~~l~el-----l~~sDvv 200 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQ----------AFGAKVVYYSTSGKNK----NEEYE----RVSLEEL-----LKTSDII 200 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHh----------hcCCEEEEECCCcccc----ccCce----eecHHHH-----hhcCCEE
Confidence 4467999999999999999997 7899999999754221 11221 1111223 4567888
Q ss_pred EEEcCCH--HHHHHHHHHHHHhCCCCcEE
Q 006034 482 MIMYTDK--KRTIEAVQRLRLAFPAIPIY 508 (663)
Q Consensus 482 v~~~~dd--~~n~~~~~~~r~~~~~~~ii 508 (663)
++..+-. ..++.-......+.|+..+|
T Consensus 201 ~lh~Plt~~T~~li~~~~~~~Mk~~a~lI 229 (311)
T PRK08410 201 SIHAPLNEKTKNLIAYKELKLLKDGAILI 229 (311)
T ss_pred EEeCCCCchhhcccCHHHHHhCCCCeEEE
Confidence 8877643 44566666777777764433
No 452
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=88.28 E-value=1.9 Score=46.12 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=57.0
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCC--------CCEEEEeC-----ChHHHHHHHhcCCCE--EEec------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVG--------WPFVAFDL-----NPSVVKESRKLGFPI--LYGD------ 463 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--------~~vvvid~-----d~~~~~~~~~~~~~v--i~GD------ 463 (663)
+|.|+|.|++|..+|..|. +++ ++|.+-.+ +++..+.+.+...+. +.|=
T Consensus 1 kI~VIGaG~wGtALA~~la----------~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i 70 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVA----------ENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANL 70 (342)
T ss_pred CEEEECcCHHHHHHHHHHH----------HcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCe
Confidence 4789999999999999997 556 89999988 556666665432222 2120
Q ss_pred -CCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHH-hCCCCcEEEEe
Q 006034 464 -ASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRL-AFPAIPIYARA 511 (663)
Q Consensus 464 -~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~-~~~~~~iia~~ 511 (663)
+++ -+++ -+++||.+++++++...-- ++...+. +.++..++..+
T Consensus 71 ~at~--dl~e-al~~ADiIIlAVPs~~i~~-vl~~l~~~l~~~~~iVs~t 116 (342)
T TIGR03376 71 VAVP--DLVE-AAKGADILVFVIPHQFLEG-ICKQLKGHVKPNARAISCI 116 (342)
T ss_pred EEEC--CHHH-HHhcCCEEEEECChHHHHH-HHHHHHhhcCCCCEEEEEe
Confidence 111 1222 2468899999999864322 2334443 33443455543
No 453
>PRK08605 D-lactate dehydrogenase; Validated
Probab=88.27 E-value=0.62 Score=49.75 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=51.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVM 482 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv 482 (663)
..++.|+|+|++|+.+++.|.+ ..|.+|...|++++... . ... .. ..+ ++++ ++++|.++
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~---------~~g~~V~~~d~~~~~~~--~-~~~---~~-~~~---l~el-l~~aDvIv 205 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAK---------GYGSDVVAYDPFPNAKA--A-TYV---DY-KDT---IEEA-VEGADIVT 205 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHh---------cCCCEEEEECCCccHhH--H-hhc---cc-cCC---HHHH-HHhCCEEE
Confidence 3479999999999999999931 57889999998765421 1 111 10 112 2222 45789898
Q ss_pred EEcCCHHHHHHH--HHHHHHhCCC
Q 006034 483 IMYTDKKRTIEA--VQRLRLAFPA 504 (663)
Q Consensus 483 ~~~~dd~~n~~~--~~~~r~~~~~ 504 (663)
++++....+-.+ ....+.+.|+
T Consensus 206 l~lP~t~~t~~li~~~~l~~mk~g 229 (332)
T PRK08605 206 LHMPATKYNHYLFNADLFKHFKKG 229 (332)
T ss_pred EeCCCCcchhhhcCHHHHhcCCCC
Confidence 887775443332 2334455555
No 454
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.26 E-value=1.1 Score=45.73 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=50.1
Q ss_pred CCcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC---hHHHHHHHhc----CCCEEEecCCCHHHHHh
Q 006034 403 SEPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN---PSVVKESRKL----GFPILYGDASRPAVLLS 472 (663)
Q Consensus 403 ~~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d---~~~~~~~~~~----~~~vi~GD~~~~~~L~~ 472 (663)
.+.++|.|. +.+|+.++++|. ++|++|++.+++ +++.+++.+. ....+..|.+|++-.++
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la----------~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLH----------NAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITA 76 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH----------HCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHH
Confidence 357899998 489999999998 789999998654 3455555431 24567899999986643
Q ss_pred c------CCCCCcEEEE
Q 006034 473 A------GITSPKAVMI 483 (663)
Q Consensus 473 a------~i~~a~~vv~ 483 (663)
+ ...+.|.+|.
T Consensus 77 ~~~~~~~~~g~ld~lv~ 93 (257)
T PRK08594 77 CFETIKEEVGVIHGVAH 93 (257)
T ss_pred HHHHHHHhCCCccEEEE
Confidence 2 2345676654
No 455
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=88.25 E-value=1.2 Score=47.74 Aligned_cols=71 Identities=23% Similarity=0.306 Sum_probs=54.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHH-------------
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLL------------- 471 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~------------- 471 (663)
++-|+|.|-+|...+-.|. +.||+|+.+|.|+++++.+.+...+.+. +-=++.|+
T Consensus 2 kI~viGtGYVGLv~g~~lA----------~~GHeVv~vDid~~KV~~ln~g~~PI~E--pgLe~ll~~~~~~gRl~fTtd 69 (414)
T COG1004 2 KITVIGTGYVGLVTGACLA----------ELGHEVVCVDIDESKVELLNKGISPIYE--PGLEELLKENLASGRLRFTTD 69 (414)
T ss_pred ceEEECCchHHHHHHHHHH----------HcCCeEEEEeCCHHHHHHHhCCCCCCcC--ccHHHHHHhccccCcEEEEcC
Confidence 5789999999999999998 8999999999999999998874444432 22233343
Q ss_pred -hcCCCCCcEEEEEcCC
Q 006034 472 -SAGITSPKAVMIMYTD 487 (663)
Q Consensus 472 -~a~i~~a~~vv~~~~d 487 (663)
++.++++|.++++++.
T Consensus 70 ~~~a~~~adv~fIavgT 86 (414)
T COG1004 70 YEEAVKDADVVFIAVGT 86 (414)
T ss_pred HHHHHhcCCEEEEEcCC
Confidence 2346688988888764
No 456
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=88.20 E-value=2.9 Score=43.09 Aligned_cols=117 Identities=17% Similarity=0.089 Sum_probs=65.5
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCCh--HHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNP--SVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~--~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
++.|+|+|++|+.+++.+.+ .++.+++.+ +.++ ++.......+. .++ +|.+.+ -.+.|.+
T Consensus 3 rVgIiG~G~iG~~~~~~l~~---------~~~~~l~~v~~~~~~~~~~~~~~~~~~-~~~---~d~~~l----~~~~DvV 65 (265)
T PRK13303 3 KVAMIGFGAIGAAVLELLEH---------DPDLRVDWVIVPEHSIDAVRRALGEAV-RVV---SSVDAL----PQRPDLV 65 (265)
T ss_pred EEEEECCCHHHHHHHHHHhh---------CCCceEEEEEEcCCCHHHHhhhhccCC-eee---CCHHHh----ccCCCEE
Confidence 68999999999999999972 445665544 3332 22221111121 222 233333 3678999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEe----cChhh----HHHHHHcCCCeEEcCchHHHHHHHH
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARA----QDMMH----LLDLKKAGATDAILENAETSLQLGS 541 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~----~~~~~----~~~l~~~Gad~vi~p~~~~~~~la~ 541 (663)
+.+++.+.. ...+..+-+.+. ++++.. .+++. .+..++.|....+.+....+..+-+
T Consensus 66 ve~t~~~~~-~e~~~~aL~aGk--~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~ 130 (265)
T PRK13303 66 VECAGHAAL-KEHVVPILKAGI--DCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALA 130 (265)
T ss_pred EECCCHHHH-HHHHHHHHHcCC--CEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHH
Confidence 999987644 344444444443 455421 23333 2345667887677666555444333
No 457
>PRK08589 short chain dehydrogenase; Validated
Probab=88.19 E-value=0.98 Score=46.48 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=49.8
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHH----Hhc--CCCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKES----RKL--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~----~~~--~~~vi~GD~~~~~~L~~a--- 473 (663)
++++|.|. +.+|+.+++.|. ++|++|++++++ +..+.. .+. ...++..|.+|++.++++
T Consensus 7 k~vlItGas~gIG~aia~~l~----------~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALA----------QEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHH
Confidence 46888887 779999999997 789999999999 443332 222 356788999998766432
Q ss_pred ---CCCCCcEEEEE
Q 006034 474 ---GITSPKAVMIM 484 (663)
Q Consensus 474 ---~i~~a~~vv~~ 484 (663)
...+.|.+|-.
T Consensus 76 ~~~~~g~id~li~~ 89 (272)
T PRK08589 76 IKEQFGRVDVLFNN 89 (272)
T ss_pred HHHHcCCcCEEEEC
Confidence 12356766544
No 458
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=88.16 E-value=2.8 Score=45.23 Aligned_cols=89 Identities=10% Similarity=0.010 Sum_probs=59.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCCh-------------------HHHH----HHHh--c
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNP-------------------SVVK----ESRK--L 455 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~-------------------~~~~----~~~~--~ 455 (663)
.+.+|+|+|.|-.|..+++.|. ..|. ++.++|.|. .+++ ++++ .
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La----------~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np 96 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLA----------GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP 96 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHH----------HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC
Confidence 3468999999999999999997 5565 689999885 2222 2222 1
Q ss_pred C--CCEEEecCCCHHHHHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 456 G--FPILYGDASRPAVLLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 456 ~--~~vi~GD~~~~~~L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
. ..++..+.+.++..+- ++++|.||.++++-+.-..+...+++.+
T Consensus 97 ~v~v~~~~~~i~~~~~~~~--~~~~DvVvd~~d~~~~r~~~n~~c~~~~ 143 (355)
T PRK05597 97 DVKVTVSVRRLTWSNALDE--LRDADVILDGSDNFDTRHLASWAAARLG 143 (355)
T ss_pred CcEEEEEEeecCHHHHHHH--HhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 2 2233445554333322 5689988888887665556667777776
No 459
>PRK07904 short chain dehydrogenase; Provisional
Probab=88.10 E-value=1 Score=45.85 Aligned_cols=74 Identities=9% Similarity=0.083 Sum_probs=51.1
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCC-CCCEEEEeCChHH-HHH----HHhc---CCCEEEecCCCHHHHH
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTV-GWPFVAFDLNPSV-VKE----SRKL---GFPILYGDASRPAVLL 471 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~-~~~vvvid~d~~~-~~~----~~~~---~~~vi~GD~~~~~~L~ 471 (663)
..++++|.|. |.+|+.++++|. ++ +++|+++++|++. .+. +.+. +..++.+|.+|++-.+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~----------~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~ 76 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYL----------KNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHP 76 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH----------hcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHH
Confidence 3457888876 889999999997 55 5899999998875 333 3222 3577899999877533
Q ss_pred h----c-CCCCCcEEEEEc
Q 006034 472 S----A-GITSPKAVMIMY 485 (663)
Q Consensus 472 ~----a-~i~~a~~vv~~~ 485 (663)
+ + .-.+.|.+|...
T Consensus 77 ~~~~~~~~~g~id~li~~a 95 (253)
T PRK07904 77 KVIDAAFAGGDVDVAIVAF 95 (253)
T ss_pred HHHHHHHhcCCCCEEEEee
Confidence 2 1 113678776544
No 460
>PRK08223 hypothetical protein; Validated
Probab=88.07 E-value=3.1 Score=43.22 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=60.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCC-CEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGW-PFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~-~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~ 480 (663)
.+.+|+|+|+|-.|..+++.|. ..|. ++.++|.|.=....+. -++++. +..+.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA----------~aGVG~i~lvD~D~Ve~SNLn---RQ~l~~---------~~diG~~-- 81 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLA----------RLGIGKFTIADFDVFELRNFN---RQAGAM---------MSTLGRP-- 81 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHH----------HhCCCeEEEEeCCCcchhccc---cccCcC---------hhHCCCc--
Confidence 3568999999999999999997 5555 6899998764433221 222211 1111111
Q ss_pred EEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec--ChhhHHHHHHcCCCeEEcCch
Q 006034 481 VMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ--DMMHLLDLKKAGATDAILENA 533 (663)
Q Consensus 481 vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~--~~~~~~~l~~~Gad~vi~p~~ 533 (663)
..-.+...++++||+++|.+... ++++...+- .+.|.|++-..
T Consensus 82 ---------Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll-~~~DlVvD~~D 126 (287)
T PRK08223 82 ---------KAEVLAEMVRDINPELEIRAFPEGIGKENADAFL-DGVDVYVDGLD 126 (287)
T ss_pred ---------HHHHHHHHHHHHCCCCEEEEEecccCccCHHHHH-hCCCEEEECCC
Confidence 22335678899999998776543 333433332 36898987653
No 461
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=88.06 E-value=2.3 Score=50.31 Aligned_cols=77 Identities=21% Similarity=0.238 Sum_probs=51.9
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-----CCCEEEecCCCHH---HHH--
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-----GFPILYGDASRPA---VLL-- 471 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-----~~~vi~GD~~~~~---~L~-- 471 (663)
.-++|.|+|.|.+|..+|..+. ..|++|+++|.|++..++..+. ...+-.|..+.++ .+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a----------~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i 381 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSA----------SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGI 381 (714)
T ss_pred ccceEEEECCchHHHHHHHHHH----------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCe
Confidence 4568999999999999999997 7899999999999986654320 0111122222211 111
Q ss_pred -----hcCCCCCcEEEEEcCCH
Q 006034 472 -----SAGITSPKAVMIMYTDK 488 (663)
Q Consensus 472 -----~a~i~~a~~vv~~~~dd 488 (663)
-..+++||.||=+..+|
T Consensus 382 ~~~~~~~~~~~aDlViEav~E~ 403 (714)
T TIGR02437 382 TPTLSYAGFDNVDIVVEAVVEN 403 (714)
T ss_pred EEeCCHHHhcCCCEEEEcCccc
Confidence 12467899888777765
No 462
>PRK06141 ornithine cyclodeaminase; Validated
Probab=88.06 E-value=1.4 Score=46.67 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=58.2
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc----CCCEEEecCCCHHHHHhcCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL----GFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~----~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
..+++.|+|.|..|+..++.+.. .....++.+.++++++.+.+.++ +..+.. ..+.+ .-+++
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~--------~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~--~~~~~----~av~~ 189 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHAS--------VRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV--VTDLE----AAVRQ 189 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHh--------cCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE--eCCHH----HHHhc
Confidence 35679999999999999986641 03457899999999998887653 333322 22222 12468
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
||.|+.+|++++ -+ .....+.|...|.+
T Consensus 190 aDIVi~aT~s~~-pv---l~~~~l~~g~~i~~ 217 (314)
T PRK06141 190 ADIISCATLSTE-PL---VRGEWLKPGTHLDL 217 (314)
T ss_pred CCEEEEeeCCCC-CE---ecHHHcCCCCEEEe
Confidence 998888888752 21 22345566654444
No 463
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=88.03 E-value=39 Score=35.79 Aligned_cols=117 Identities=20% Similarity=0.161 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhCCc--HHHHHHHhhhhccCCc-hhhHHHhhhhchhhhhHHHHHHHhccccChhHHhh---hHHHHHHHH
Q 006034 226 VAGTSLLTQKLGFS--DTLGAFLAGAILAETN-FRTQIEADIRPFRGLLLGLFFVTTGSSIDIELLFR---EWPNVLALL 299 (663)
Q Consensus 226 ~~~~~~l~~~~G~s--~~lgAflaGl~l~~~~-~~~~i~~~~~~~~~~~~plFFv~vG~~l~~~~l~~---~~~~~l~~~ 299 (663)
+...+++.+.++++ ..+|+++.+.++.... .....-+.+ ..+..-+.=.++|.+++...+.+ .++..+...
T Consensus 164 ~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l---~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~ 240 (318)
T PF05145_consen 164 ALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWL---VNAAQVLIGASIGSRFTRETLRELRRLLPPALLST 240 (318)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHH---HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHH
Confidence 33445566655553 3566666555554321 000111111 12222223356788888776643 234444445
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHhhhhhhhHHHHHHHHHHHc
Q 006034 300 AGLIIIKTLIISAIGPRVGLTLQESVRIGLLLSQGGEFAFVVFSLANRL 348 (663)
Q Consensus 300 ~~~~l~K~~~~~~~~~~~g~~~r~~~~~g~~l~~~G~~~lvla~~a~~~ 348 (663)
+..+..-.+..++..++.++++.+++. +++|.|.-++.+.....+.
T Consensus 241 ~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~ 286 (318)
T PF05145_consen 241 LLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGA 286 (318)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCC
Confidence 555566667778888889999888773 3589998888876665543
No 464
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=87.98 E-value=1.5 Score=46.15 Aligned_cols=132 Identities=20% Similarity=0.195 Sum_probs=78.1
Q ss_pred EEEEcCCcchHHHHHHhcccccCCCCCCCCC--CCEEEEeCChHHHHHHHh----c----CCCEEEecCCCHHHHHhcCC
Q 006034 406 VVIVGFGQMGQVLANLLSAPLASGSDGNTVG--WPFVAFDLNPSVVKESRK----L----GFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 406 viI~G~g~~g~~la~~L~~~~~~~~~~~~~~--~~vvvid~d~~~~~~~~~----~----~~~vi~GD~~~~~~L~~a~i 475 (663)
+.|+|.|.+|..++-.|. ..+ .+++++|.++++++.... . ...-++. .+|. ..+
T Consensus 1 i~iiGaG~VG~~~a~~l~----------~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~~-----~~l 64 (300)
T cd00300 1 ITIIGAGNVGAAVAFALI----------AKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGDY-----ADA 64 (300)
T ss_pred CEEECCCHHHHHHHHHHH----------hcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCCH-----HHh
Confidence 478999999999999886 455 579999999987654432 1 1112221 1222 256
Q ss_pred CCCcEEEEEcCC---------H--HHHHH----HHHHHHHhCCCCcEEEEecChhhHH--HH-HHcCC--CeEEcC-chH
Q 006034 476 TSPKAVMIMYTD---------K--KRTIE----AVQRLRLAFPAIPIYARAQDMMHLL--DL-KKAGA--TDAILE-NAE 534 (663)
Q Consensus 476 ~~a~~vv~~~~d---------d--~~n~~----~~~~~r~~~~~~~iia~~~~~~~~~--~l-~~~Ga--d~vi~p-~~~ 534 (663)
++||.+|++.+. | ..|+. ++..+++.+|+.. +..+.||.+.- .+ +..|. .+|+-- ...
T Consensus 65 ~~aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~-viv~sNP~d~~~~~~~~~sg~~~~kviG~gt~l 143 (300)
T cd00300 65 ADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAI-ILVVSNPVDILTYVAQKLSGLPKNRVIGSGTLL 143 (300)
T ss_pred CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEEccChHHHHHHHHHHHhCcCHHHEEecCCcH
Confidence 899988887763 1 23444 4455667788855 44445654332 22 33343 345544 334
Q ss_pred HHHHHHHHHHHhcCCCHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~ 554 (663)
-..++-+.+-+.+++++..+
T Consensus 144 Ds~r~~~~la~~l~v~~~~v 163 (300)
T cd00300 144 DSARFRSLLAEKLDVDPQSV 163 (300)
T ss_pred HHHHHHHHHHHHhCCCcccE
Confidence 34566666666667766443
No 465
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=87.97 E-value=10 Score=40.05 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=77.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCC--CEEEEeCCh--HHHHHHH----h----cCCCE-EEecCCCHHHH
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGW--PFVAFDLNP--SVVKESR----K----LGFPI-LYGDASRPAVL 470 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~--~vvvid~d~--~~~~~~~----~----~~~~v-i~GD~~~~~~L 470 (663)
+|.|+|. |.+|..++..|. ..|. +++++|.++ +..+... + .+... +.+ .+|.
T Consensus 2 kI~IiGatG~vG~~~a~~l~----------~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~-~~d~--- 67 (309)
T cd05294 2 KVSIIGASGRVGSATALLLA----------KEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKI-SSDL--- 67 (309)
T ss_pred EEEEECCCChHHHHHHHHHH----------hCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEE-CCCH---
Confidence 6899998 999999999997 4554 499999965 3321111 1 11111 222 1222
Q ss_pred HhcCCCCCcEEEEEcCC------H-----HHHHH----HHHHHHHhCCCCcEEEEecChhh--H-HHHHHcCCC--eEEc
Q 006034 471 LSAGITSPKAVMIMYTD------K-----KRTIE----AVQRLRLAFPAIPIYARAQDMMH--L-LDLKKAGAT--DAIL 530 (663)
Q Consensus 471 ~~a~i~~a~~vv~~~~d------d-----~~n~~----~~~~~r~~~~~~~iia~~~~~~~--~-~~l~~~Gad--~vi~ 530 (663)
+ .+.+||.++++.+. + ..|.. ++...++.+|+..+++-. |+-+ . -..+..|.+ +++-
T Consensus 68 ~--~l~~aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~-npvd~~t~~~~~~~g~~~~~viG 144 (309)
T cd05294 68 S--DVAGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT-NPVDVMTYKALKESGFDKNRVFG 144 (309)
T ss_pred H--HhCCCCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC-CchHHHHHHHHHhcCCCHHHEee
Confidence 2 27899999888762 1 12333 334456667775544444 4432 2 223444543 4554
Q ss_pred C-chHHHHHHHHHHHHhcCCCHHHHH
Q 006034 531 E-NAETSLQLGSKLLKGFGVMSDDVT 555 (663)
Q Consensus 531 p-~~~~~~~la~~~~~~~~~~~~~~~ 555 (663)
- ..+-+.++.+.+-+.+++++..++
T Consensus 145 ~gt~LDs~R~~~~la~~l~v~~~~v~ 170 (309)
T cd05294 145 LGTHLDSLRFKVAIAKHFNVHISEVH 170 (309)
T ss_pred ccchHHHHHHHHHHHHHHCcChHHeE
Confidence 4 344455667777777888886554
No 466
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=87.95 E-value=0.57 Score=51.09 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=42.4
Q ss_pred CcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCC
Q 006034 404 EPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGI 475 (663)
Q Consensus 404 ~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i 475 (663)
..|+|+|.|..|..+|-.|. +.|++|+++|+.++.. .+.+ ..+.=.+...++|++.|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~----------~~G~~V~l~E~~~~~~---~~~~-r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALA----------RAGLDVTLLERAPREL---LERG-RGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHH----------hCCCcEEEEccCcccc---ccCc-eeeeecHhHHHHHHHcCC
Confidence 36999999999999999998 8999999999983221 1112 333334455667777777
No 467
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=87.94 E-value=0.81 Score=45.11 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=37.7
Q ss_pred CCCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHH
Q 006034 401 EGSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESR 453 (663)
Q Consensus 401 ~~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~ 453 (663)
...++|-|+|.|.+|..+|+.-. +.|++|.++|.|++...++.
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a----------~sg~~V~l~d~~~~aL~~A~ 51 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAA----------TSGLNVWLVDANEDALSRAT 51 (298)
T ss_pred ccccceEEEcccccchhHHHHHH----------hcCCceEEecCCHHHHHHHH
Confidence 35679999999999999999876 89999999999999866554
No 468
>PRK05872 short chain dehydrogenase; Provisional
Probab=87.94 E-value=1.4 Score=46.14 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=54.0
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc---CCCE--EEecCCCHHHHHhc---
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL---GFPI--LYGDASRPAVLLSA--- 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~---~~~v--i~GD~~~~~~L~~a--- 473 (663)
.+.++|.|. |-+|+.+++.|. +.|++|+++++|+++.+.+.+. +..+ +..|.+|++-++++
T Consensus 9 gk~vlItGas~gIG~~ia~~l~----------~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~ 78 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLH----------ARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEE 78 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHH
Confidence 356888886 779999999997 7899999999999987765441 2333 44999999876543
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|...+
T Consensus 79 ~~~~~g~id~vI~nAG 94 (296)
T PRK05872 79 AVERFGGIDVVVANAG 94 (296)
T ss_pred HHHHcCCCCEEEECCC
Confidence 1245687766543
No 469
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.92 E-value=1.3 Score=45.24 Aligned_cols=71 Identities=15% Similarity=0.097 Sum_probs=49.9
Q ss_pred CcEEEEcCC---cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH---HHHHHhc--CCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV---VKESRKL--GFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~g---~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~---~~~~~~~--~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|.+ -+|+.+++.|. ++|.+|++.+++++. .+++.++ ...++..|.+|++-.+++
T Consensus 11 k~~lItGas~g~GIG~a~a~~la----------~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFR----------ALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHH----------HcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHH
Confidence 567888986 69999999998 789999999988643 3333332 245678999998866542
Q ss_pred ----CCCCCcEEEEE
Q 006034 474 ----GITSPKAVMIM 484 (663)
Q Consensus 474 ----~i~~a~~vv~~ 484 (663)
...+-|.+|..
T Consensus 81 ~~~~~~g~ld~lv~n 95 (258)
T PRK07533 81 RIAEEWGRLDFLLHS 95 (258)
T ss_pred HHHHHcCCCCEEEEc
Confidence 22356766543
No 470
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=87.82 E-value=8.9 Score=40.60 Aligned_cols=141 Identities=16% Similarity=0.205 Sum_probs=0.0
Q ss_pred cccccCchhHHHHHHHHHHhccCCCcCCc---hhHHHHHHHHHHHHHHHHhhcCChHHHHHhhhHHHHHHHHHHHHHHHH
Q 006034 2 IMRILCRSQILGFFFAGIVLNQLGIIRNL---TDVKVLSEWGILFLLFEMGLELSLARLKALAKFAFGMGLTQVVLSTLA 78 (663)
Q Consensus 2 l~~rl~lP~ivg~ilaGillGp~glv~~~---~~l~~l~~lgl~lllF~~Glel~~~~l~~~~~~~~~~~~~~~~~~~~~ 78 (663)
+.+-++.|.+++ .++|+++..+|+--+. +.++.+++....+-||..|+.++.+.+++..|........-.++.=++
T Consensus 176 ~~~~~~nP~iia-~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i 254 (321)
T TIGR00946 176 WKKLIKFPPLWA-PLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAV 254 (321)
T ss_pred HHHHHhCCChHH-HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhCCCCCcchhhHHHHhhccccccccccCHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHH
Q 006034 79 FTAFELPPNGAVGTRILEFLFHSRSDLVNIRSIDEAVVIGAALSLSSSAFVLQLLAEKGELPTRFGSATLGILLLQDIAV 158 (663)
Q Consensus 79 ~~~~~~~~~~~~G~~~~~~~~g~~~~~~~~~~~~~alllg~~ls~TS~~vv~~il~~~~~~~~~~g~~~l~~~~~~Di~~ 158 (663)
+..+ ..+++ --....-...+.+..-+++...++.++--.+.+.....+..+.+--++.
T Consensus 255 ~~~~-------------~~~~~---------l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~~v~~sT~ls~~t 312 (321)
T TIGR00946 255 MAGI-------------SKLIG---------LRGLELSVAILQAALPGGAVAAVLATEYEVDVELASTAVTLSTVLSLIS 312 (321)
T ss_pred HHHH-------------HHHhC---------CChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 006034 159 VPLLVIL 165 (663)
Q Consensus 159 i~~l~i~ 165 (663)
+++...+
T Consensus 313 lp~~~~l 319 (321)
T TIGR00946 313 LPLFIIL 319 (321)
T ss_pred HHHHHHH
No 471
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.80 E-value=1.3 Score=49.30 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=55.6
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH--HHHHHHh--cCCCEEEecCCCHHHHHhcCCCC
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--VVKESRK--LGFPILYGDASRPAVLLSAGITS 477 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~--~~~~~~~--~~~~vi~GD~~~~~~L~~a~i~~ 477 (663)
..+.++|+|.|..|..+|+.|. +.|++|.+.|.++. ..+.+++ .|..+..|.- +++.+ ++
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~----------~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~-~~~~~-----~~ 68 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLA----------RQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGF-DCELL-----VQ 68 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHH----------hCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCC-ChHHh-----cC
Confidence 4567999999999999999997 89999999997653 2234554 3677776632 23333 46
Q ss_pred CcEEEEEcCCHHHHHHHHHHHHHhC
Q 006034 478 PKAVMIMYTDKKRTIEAVQRLRLAF 502 (663)
Q Consensus 478 a~~vv~~~~dd~~n~~~~~~~r~~~ 502 (663)
+|.||....=+..|- ....||+.+
T Consensus 69 ~d~vV~sp~i~~~~p-~~~~a~~~~ 92 (448)
T PRK03803 69 ASEIIISPGLALDTP-ALRAAAAMG 92 (448)
T ss_pred CCEEEECCCCCCCCH-HHHHHHHCC
Confidence 786766554333343 344455543
No 472
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.80 E-value=1.1 Score=50.19 Aligned_cols=87 Identities=13% Similarity=-0.014 Sum_probs=55.3
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH----HHHHHHhcCCCEEEecCCCHHHHHhcCCCCC
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS----VVKESRKLGFPILYGDASRPAVLLSAGITSP 478 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~----~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a 478 (663)
.++++|+|+|+-|+..++.|. +.|.+|++.|.++. ..+++++ +...+.|+-. ++.+ +++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~----------~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~-~~~~-----~~~ 70 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALR----------AHLPAQALTLFCNAVEAREVGALAD-AALLVETEAS-AQRL-----AAF 70 (468)
T ss_pred CCEEEEEccchhhHHHHHHHH----------HcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCC-hHHc-----cCC
Confidence 357999999999999999998 89999999997543 1223444 3444444322 3333 568
Q ss_pred cEEEEEcCCHHHHHHHHHHHHHhCCCCcEEE
Q 006034 479 KAVMIMYTDKKRTIEAVQRLRLAFPAIPIYA 509 (663)
Q Consensus 479 ~~vv~~~~dd~~n~~~~~~~r~~~~~~~iia 509 (663)
|.||...+=+..|- ....+|+.+ ++++.
T Consensus 71 d~vV~SpgI~~~~p-~~~~a~~~~--i~i~~ 98 (468)
T PRK04690 71 DVVVKSPGISPYRP-EALAAAARG--TPFIG 98 (468)
T ss_pred CEEEECCCCCCCCH-HHHHHHHcC--CcEEE
Confidence 87766554333333 355556654 45555
No 473
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=87.76 E-value=0.84 Score=51.17 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH-HHhcCCCEEEe------cCCCHH-HHHhc
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE-SRKLGFPILYG------DASRPA-VLLSA 473 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~-~~~~~~~vi~G------D~~~~~-~L~~a 473 (663)
.-++++|+|.|+++..+++.++ +.|++++++..+++.... .+..+..+..| |..|.+ +++.+
T Consensus 4 ~~~~vLi~~~geia~~ii~aa~----------~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a 73 (467)
T PRK12833 4 RIRKVLVANRGEIAVRIIRAAR----------ELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAA 73 (467)
T ss_pred CCcEEEEECCcHHHHHHHHHHH----------HcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHH
Confidence 4578999999999999999998 899999999654432111 11112223234 555644 45555
Q ss_pred CCCCCcEEEEEcCCHHHHHHHHHHHHHh-----CCCCcEEEEecCh-hhHHHHHHcCCCe
Q 006034 474 GITSPKAVMIMYTDKKRTIEAVQRLRLA-----FPAIPIYARAQDM-MHLLDLKKAGATD 527 (663)
Q Consensus 474 ~i~~a~~vv~~~~dd~~n~~~~~~~r~~-----~~~~~iia~~~~~-~~~~~l~~~Gad~ 527 (663)
.-.++|+++...+-..+|...+..+.+. +|+...+..+.|. ...+.++++|+..
T Consensus 74 ~~~~~daI~pg~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~ 133 (467)
T PRK12833 74 RQCGADAIHPGYGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPT 133 (467)
T ss_pred HHhCCCEEEECCCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 6667888876553323344333334443 3333344444444 4555678888874
No 474
>PLN02572 UDP-sulfoquinovose synthase
Probab=87.75 E-value=1.2 Score=49.47 Aligned_cols=74 Identities=23% Similarity=0.185 Sum_probs=51.0
Q ss_pred CCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChH--------------------HHHHHH---hcCC
Q 006034 402 GSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPS--------------------VVKESR---KLGF 457 (663)
Q Consensus 402 ~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~--------------------~~~~~~---~~~~ 457 (663)
..++++|.|. |-+|+.+++.|. ++|++|+++|+... +.+... ..+.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~----------~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v 115 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLS----------KRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEI 115 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHH----------HCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcc
Confidence 3456999986 999999999998 78999999984211 111111 1357
Q ss_pred CEEEecCCCHHHHHhcCC-CCCcEEEEEc
Q 006034 458 PILYGDASRPAVLLSAGI-TSPKAVMIMY 485 (663)
Q Consensus 458 ~vi~GD~~~~~~L~~a~i-~~a~~vv~~~ 485 (663)
.++.||.+|++.++++=- .+.|.|+-+.
T Consensus 116 ~~v~~Dl~d~~~v~~~l~~~~~D~ViHlA 144 (442)
T PLN02572 116 ELYVGDICDFEFLSEAFKSFEPDAVVHFG 144 (442)
T ss_pred eEEECCCCCHHHHHHHHHhCCCCEEEECC
Confidence 899999999988765311 1467666544
No 475
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=87.64 E-value=0.48 Score=44.25 Aligned_cols=107 Identities=22% Similarity=0.170 Sum_probs=60.2
Q ss_pred CCCCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCc
Q 006034 401 EGSEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPK 479 (663)
Q Consensus 401 ~~~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~ 479 (663)
...++|.++|| .+ ++++|+ +.+.++.++|.|++...... ..+ ++...+++| ++||
T Consensus 9 ~~~~~V~~VG~f~P----~~~~l~----------~~~~~v~v~d~~~~~~~~~~----~~~-~~~~~~~~l-----~~aD 64 (147)
T PF04016_consen 9 GPGDKVGMVGYFQP----LVEKLK----------ERGAEVRVFDLNPDNIGEEP----GDV-PDEDAEEIL-----PWAD 64 (147)
T ss_dssp TTTSEEEEES--HC----CHHHHC----------CCCSEEEEEESSGGG--SSC----T-E-EGGGHHHHG-----GG-S
T ss_pred cCCCEEEEEcCcHH----HHHHHh----------cCCCCEEEEECCCCCCCCCC----CcC-CHHHHHHHH-----ccCC
Confidence 46678999996 23 677886 78999999999998754211 111 555555555 4688
Q ss_pred EEEEEcCCHHHHHHHHHHHHHhCCCCcEEEEec-ChhhHHHHHHcCCCeEEcCc
Q 006034 480 AVMIMYTDKKRTIEAVQRLRLAFPAIPIYARAQ-DMMHLLDLKKAGATDAILEN 532 (663)
Q Consensus 480 ~vv~~~~dd~~n~~~~~~~r~~~~~~~iia~~~-~~~~~~~l~~~Gad~vi~p~ 532 (663)
.+ +.|+..-.|-.+-..++...+..+++.--. .+-+-+.|.+.|+|++--..
T Consensus 65 ~v-iiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~~~Gv~~v~g~~ 117 (147)
T PF04016_consen 65 VV-IITGSTLVNGTIDDILELARNAREVILYGPSAPLHPEALFDYGVTYVGGSR 117 (147)
T ss_dssp EE-EEECHHCCTTTHHHHHHHTTTSSEEEEESCCGGS-GGGGCCTT-SEEEEEE
T ss_pred EE-EEEeeeeecCCHHHHHHhCccCCeEEEEecCchhhHHHHHhCCCCEEEEEE
Confidence 55 455544344333333333332324444333 44455588999999864443
No 476
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=87.62 E-value=0.55 Score=50.52 Aligned_cols=108 Identities=22% Similarity=0.261 Sum_probs=65.4
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEE
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIM 484 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~ 484 (663)
++.|+|.|+.|+.+++..+ +.|++|+++|.+++.... +.....+.+|..|++.+++.- +++|.+ +
T Consensus 1 ~igiiG~gql~~~l~~aa~----------~lG~~v~~~d~~~~~p~~--~~ad~~~~~~~~d~~~i~~~a-~~~dvi--t 65 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAAR----------PLGIKVHVLDPDANSPAV--QVADHVVLAPFFDPAAIRELA-ESCDVI--T 65 (352)
T ss_pred CEEEECCCHHHHHHHHHHH----------HcCCEEEEECCCCCCChh--HhCceeEeCCCCCHHHHHHHH-hhCCEE--E
Confidence 3679999999999999997 789999999998764221 112335578999999887642 456744 3
Q ss_pred cCCHHHHHHHHHHHHHh----CCCCcEEEEecCh-hhHHHHHHcCCCe
Q 006034 485 YTDKKRTIEAVQRLRLA----FPAIPIYARAQDM-MHLLDLKKAGATD 527 (663)
Q Consensus 485 ~~dd~~n~~~~~~~r~~----~~~~~iia~~~~~-~~~~~l~~~Gad~ 527 (663)
.+.+..+......+.+. .|+...+..++|. ...+.+++.|+..
T Consensus 66 ~e~e~i~~~~l~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip~ 113 (352)
T TIGR01161 66 FEFEHVDVEALEKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLPV 113 (352)
T ss_pred eCcCcCCHHHHHHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 33222222222333333 2222233333333 3445667777763
No 477
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=87.62 E-value=1.5 Score=45.97 Aligned_cols=137 Identities=23% Similarity=0.277 Sum_probs=80.6
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHH----HHh----cCC-CEEEecCCCHHHHHhcCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKE----SRK----LGF-PILYGDASRPAVLLSAGI 475 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~----~~~----~~~-~vi~GD~~~~~~L~~a~i 475 (663)
+|.|+|.|++|+.++-.|.. +..+.+++++|.+++..+- +.+ .+. .-+.+| .| -..+
T Consensus 2 KVaviGaG~VG~s~a~~l~~--------~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~-----y~~~ 67 (313)
T COG0039 2 KVAVIGAGNVGSSLAFLLLL--------QGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD-----YEDL 67 (313)
T ss_pred eEEEECCChHHHHHHHHHhc--------ccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC-----hhhh
Confidence 68999999999999998852 2345689999999665332 222 111 122333 22 2356
Q ss_pred CCCcEEEEEcC---------CH--HHHHHHH----HHHHHhCCCCcEEEEecChhhHH--HH-HHcC--CCeEEcC-chH
Q 006034 476 TSPKAVMIMYT---------DK--KRTIEAV----QRLRLAFPAIPIYARAQDMMHLL--DL-KKAG--ATDAILE-NAE 534 (663)
Q Consensus 476 ~~a~~vv~~~~---------dd--~~n~~~~----~~~r~~~~~~~iia~~~~~~~~~--~l-~~~G--ad~vi~p-~~~ 534 (663)
++||.|+++.+ +| +.|..+. ...++.+|+. ++-.+.||-+.- .. +..| ..+|+-. ..+
T Consensus 68 ~~aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~-ivlVvtNPvD~~ty~~~k~sg~p~~rvig~gt~L 146 (313)
T COG0039 68 KGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDA-IVLVVTNPVDILTYIAMKFSGFPKNRVIGSGTVL 146 (313)
T ss_pred cCCCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCe-EEEEecCcHHHHHHHHHHhcCCCccceecccchH
Confidence 89998887762 23 4555543 4445557774 444555554433 22 3333 3343332 335
Q ss_pred HHHHHHHHHHHhcCCCHHHHHH
Q 006034 535 TSLQLGSKLLKGFGVMSDDVTF 556 (663)
Q Consensus 535 ~~~~la~~~~~~~~~~~~~~~~ 556 (663)
-..++-..+-+.+++++..++.
T Consensus 147 DsaR~~~~lae~~~v~~~~V~~ 168 (313)
T COG0039 147 DSARFRTFLAEKLGVSPKDVHA 168 (313)
T ss_pred HHHHHHHHHHHHhCCChhHcee
Confidence 5566777777777888766653
No 478
>PRK07577 short chain dehydrogenase; Provisional
Probab=87.57 E-value=0.96 Score=45.03 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=49.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhc-----CCCC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSA-----GITS 477 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a-----~i~~ 477 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++++. +....++.+|.+|++..+++ .-.+
T Consensus 4 k~vlItG~s~~iG~~ia~~l~----------~~G~~v~~~~r~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 68 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLA----------NLGHQVIGIARSAID-----DFPGELFACDLADIEQTAATLAQINEIHP 68 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHH----------HCCCEEEEEeCCccc-----ccCceEEEeeCCCHHHHHHHHHHHHHhCC
Confidence 46888887 889999999998 789999999998765 12336789999999765431 1114
Q ss_pred CcEEEEEc
Q 006034 478 PKAVMIMY 485 (663)
Q Consensus 478 a~~vv~~~ 485 (663)
.|.++-+.
T Consensus 69 ~d~vi~~a 76 (234)
T PRK07577 69 VDAIVNNV 76 (234)
T ss_pred CcEEEECC
Confidence 57776543
No 479
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.56 E-value=1.4 Score=45.44 Aligned_cols=71 Identities=17% Similarity=0.071 Sum_probs=49.4
Q ss_pred CcEEEEcCC---cchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHH---HHHHh-cC-CCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGFG---QMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVV---KESRK-LG-FPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~g---~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~---~~~~~-~~-~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|.+ -+|+.+++.|. +.|++|++.+++++.. +.+.+ .+ ...+..|.+|++-.+++
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la----------~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLA----------AQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFE 77 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHH----------hCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHH
Confidence 568888987 59999999998 7999999998876432 33322 23 34678999998765432
Q ss_pred ----CCCCCcEEEEE
Q 006034 474 ----GITSPKAVMIM 484 (663)
Q Consensus 474 ----~i~~a~~vv~~ 484 (663)
...+-|.+|-.
T Consensus 78 ~~~~~~g~iD~lVnn 92 (271)
T PRK06505 78 ALEKKWGKLDFVVHA 92 (271)
T ss_pred HHHHHhCCCCEEEEC
Confidence 22356666543
No 480
>PRK08226 short chain dehydrogenase; Provisional
Probab=87.55 E-value=1.2 Score=45.41 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=51.2
Q ss_pred CCcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHH---HHHhc--CCCEEEecCCCHHHHHhc---
Q 006034 403 SEPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVK---ESRKL--GFPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 403 ~~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~---~~~~~--~~~vi~GD~~~~~~L~~a--- 473 (663)
.++++|.| .|.+|+.+++.|. ++|++|++++++++..+ ...+. ....+.+|.+|++.++++
T Consensus 6 ~~~~lItG~s~giG~~la~~l~----------~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 75 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFA----------RHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKR 75 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHH----------HCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHH
Confidence 35788887 5789999999998 78999999999875322 22222 245788999998876653
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 76 ~~~~~~~id~vi~~a 90 (263)
T PRK08226 76 AKEKEGRIDILVNNA 90 (263)
T ss_pred HHHHcCCCCEEEECC
Confidence 123556665543
No 481
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=87.48 E-value=3.2 Score=43.08 Aligned_cols=134 Identities=16% Similarity=0.046 Sum_probs=78.1
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCC-CCEEEEeCChHHHHHHHhcCCCEE-EecCCCHHHHHhcCCCCCcE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVG-WPFVAFDLNPSVVKESRKLGFPIL-YGDASRPAVLLSAGITSPKA 480 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~-~~vvvid~d~~~~~~~~~~~~~vi-~GD~~~~~~L~~a~i~~a~~ 480 (663)
.++++|+|.|-.++.++..|. +.| .+++|+.+++++.+++.+.--... .....+.+-+... +++|.
T Consensus 126 ~~~vlilGAGGAarAv~~aL~----------~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~--~~~dl 193 (283)
T COG0169 126 GKRVLILGAGGAARAVAFALA----------EAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGL--EEADL 193 (283)
T ss_pred CCEEEEECCcHHHHHHHHHHH----------HcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccc--cccCE
Confidence 468999999999999999998 677 579999999999998876311110 1111111112211 17998
Q ss_pred EEEEcCCHHHH---HHHHHHHHHhCCCCcEEE-EecChh---hHHHHHHcCCCeEEcCchHHHHHHHHHHHHhcCCCH
Q 006034 481 VMIMYTDKKRT---IEAVQRLRLAFPAIPIYA-RAQDMM---HLLDLKKAGATDAILENAETSLQLGSKLLKGFGVMS 551 (663)
Q Consensus 481 vv~~~~dd~~n---~~~~~~~r~~~~~~~iia-~~~~~~---~~~~l~~~Gad~vi~p~~~~~~~la~~~~~~~~~~~ 551 (663)
+|=+|+-.... -.... .+..++..++. .+.++. ..+..++.|+. +++--...-.|-+...--..|..|
T Consensus 194 iINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~-~idGl~Mlv~Qaa~aF~lwtg~~p 268 (283)
T COG0169 194 LINATPVGMAGPEGDSPVP--AELLPKGAIVYDVVYNPLETPLLREARAQGAK-TIDGLGMLVHQAAEAFELWTGVEP 268 (283)
T ss_pred EEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEeccCCCCCHHHHHHHHcCCe-EECcHHHHHHHHHHHHHHHhCCCC
Confidence 88777642111 11111 33333434443 444544 44555667887 777665444444444444444444
No 482
>PRK05876 short chain dehydrogenase; Provisional
Probab=87.47 E-value=1.1 Score=46.28 Aligned_cols=72 Identities=14% Similarity=0.095 Sum_probs=52.0
Q ss_pred CcEEEEc-CCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC--CCEEEecCCCHHHHHhc---
Q 006034 404 EPVVIVG-FGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG--FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 404 ~~viI~G-~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~--~~vi~GD~~~~~~L~~a--- 473 (663)
+.++|.| .|-+|+.+++.|. ++|++|++.+++++..+...+ .+ ...+..|.+|++-++++
T Consensus 7 k~vlVTGas~gIG~ala~~La----------~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~ 76 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFA----------RRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADE 76 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 4577777 5889999999998 789999999999877655432 23 45678999998877542
Q ss_pred ---CCCCCcEEEEEc
Q 006034 474 ---GITSPKAVMIMY 485 (663)
Q Consensus 474 ---~i~~a~~vv~~~ 485 (663)
...+.|.+|-..
T Consensus 77 ~~~~~g~id~li~nA 91 (275)
T PRK05876 77 AFRLLGHVDVVFSNA 91 (275)
T ss_pred HHHHcCCCCEEEECC
Confidence 123457665533
No 483
>PRK09135 pteridine reductase; Provisional
Probab=87.46 E-value=1.2 Score=44.65 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=52.3
Q ss_pred CcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCC-hHHHHHHH----h---cCCCEEEecCCCHHHHHhcC
Q 006034 404 EPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLN-PSVVKESR----K---LGFPILYGDASRPAVLLSAG 474 (663)
Q Consensus 404 ~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d-~~~~~~~~----~---~~~~vi~GD~~~~~~L~~a~ 474 (663)
++++|.|. |.+|+.+++.|. ++|++|++++++ ++..+... + .....+++|.+|++.++++-
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~----------~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 76 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLH----------AAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELV 76 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHH----------HCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHH
Confidence 57888886 899999999998 789999999985 33333322 2 23667899999998776431
Q ss_pred ------CCCCcEEEEEcC
Q 006034 475 ------ITSPKAVMIMYT 486 (663)
Q Consensus 475 ------i~~a~~vv~~~~ 486 (663)
..+.|.++-+.+
T Consensus 77 ~~~~~~~~~~d~vi~~ag 94 (249)
T PRK09135 77 AACVAAFGRLDALVNNAS 94 (249)
T ss_pred HHHHHHcCCCCEEEECCC
Confidence 235687775554
No 484
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=87.45 E-value=0.51 Score=51.22 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=33.0
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV 448 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~ 448 (663)
.+-+|+|+|.|..|..+|-.|. +.|++|+++|++++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~----------~~G~~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALA----------QSGLRVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHH----------hCCCeEEEEecCCCc
Confidence 4457999999999999999997 789999999998774
No 485
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=87.44 E-value=0.78 Score=47.87 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=51.8
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEE
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMI 483 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~ 483 (663)
+|+|.|. |-+|+.+++.|. +.|++|+.+|+.+....... .+...+.+|.+|.+..+++--...|+|+-
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~----------~~g~~V~~~~r~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~d~vih 70 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLL----------AAGHDVRGLDRLRDGLDPLL-SGVEFVVLDLTDRDLVDELAKGVPDAVIH 70 (314)
T ss_pred eEEEEcCcccHHHHHHHHHH----------hCCCeEEEEeCCCccccccc-cccceeeecccchHHHHHHHhcCCCEEEE
Confidence 3899995 999999999998 67999999999887665444 56788999999987666542222155544
Q ss_pred E
Q 006034 484 M 484 (663)
Q Consensus 484 ~ 484 (663)
+
T Consensus 71 ~ 71 (314)
T COG0451 71 L 71 (314)
T ss_pred c
Confidence 3
No 486
>PRK07832 short chain dehydrogenase; Provisional
Probab=87.40 E-value=1.3 Score=45.53 Aligned_cols=72 Identities=18% Similarity=0.101 Sum_probs=51.7
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC---CCEEEecCCCHHHHHhc---
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG---FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~---~~vi~GD~~~~~~L~~a--- 473 (663)
.++|.|. |.+|+.+++.|. ++|++|+++++|++..+...+ .+ ...+.+|.+|++..+++
T Consensus 2 ~vlItGas~giG~~la~~la----------~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 71 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLA----------AQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAAD 71 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHH
Confidence 4778875 899999999997 789999999999877554432 22 23467999998866431
Q ss_pred ---CCCCCcEEEEEcC
Q 006034 474 ---GITSPKAVMIMYT 486 (663)
Q Consensus 474 ---~i~~a~~vv~~~~ 486 (663)
...+.|.+|...+
T Consensus 72 ~~~~~~~id~lv~~ag 87 (272)
T PRK07832 72 IHAAHGSMDVVMNIAG 87 (272)
T ss_pred HHHhcCCCCEEEECCC
Confidence 2346787776553
No 487
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.37 E-value=6.4 Score=41.85 Aligned_cols=139 Identities=14% Similarity=0.195 Sum_probs=84.1
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh--HHHHH----HHhcC-----CCEEEecCCCHHHHHh
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVKE----SRKLG-----FPILYGDASRPAVLLS 472 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~--~~~~~----~~~~~-----~~vi~GD~~~~~~L~~ 472 (663)
+|.|+|. |++|..++..|.. .++..+...++++++|.++ +..+- +.+.- ...+. ..+ .
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~---~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~~~-----~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS---GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--TDP-----E 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh---CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--cCh-----H
Confidence 5899999 9999999998861 2332223445799999987 54221 11110 01111 112 2
Q ss_pred cCCCCCcEEEEEcCC---------H--HHHHHH----HHHHHHh-CCCCcEEEEecChhhH---HHHHHcC---CCeEEc
Q 006034 473 AGITSPKAVMIMYTD---------K--KRTIEA----VQRLRLA-FPAIPIYARAQDMMHL---LDLKKAG---ATDAIL 530 (663)
Q Consensus 473 a~i~~a~~vv~~~~d---------d--~~n~~~----~~~~r~~-~~~~~iia~~~~~~~~---~~l~~~G---ad~vi~ 530 (663)
..+++||.||++.+. | ..|..+ +...++. +|+..++. +.||-+. -..+..| ..+|+-
T Consensus 72 ~~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiiv-vsNPvD~~t~~~~k~sg~~p~~~vig 150 (323)
T cd00704 72 EAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLV-VGNPANTNALIALKNAPNLPPKNFTA 150 (323)
T ss_pred HHhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEE-eCCcHHHHHHHHHHHcCCCCHHHEEE
Confidence 346789988877654 1 234443 3445556 47755444 5676542 2345566 346776
Q ss_pred CchHHHHHHHHHHHHhcCCCHHHH
Q 006034 531 ENAETSLQLGSKLLKGFGVMSDDV 554 (663)
Q Consensus 531 p~~~~~~~la~~~~~~~~~~~~~~ 554 (663)
-...-..++-..+-+.++++|..+
T Consensus 151 ~t~LDs~R~r~~la~~l~v~~~~V 174 (323)
T cd00704 151 LTRLDHNRAKAQVARKLGVRVSDV 174 (323)
T ss_pred eeHHHHHHHHHHHHHHhCcCHHHc
Confidence 677777788888888888888766
No 488
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=87.34 E-value=1.2 Score=50.83 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=51.5
Q ss_pred CCCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 402 GSEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 402 ~~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
..+++.|+|+|++|+.+|+.|+ ..|.+|.+.|+.... +...+.+.... +-++. ++++|.+
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~----------~fG~~V~~~d~~~~~-~~~~~~g~~~~----~l~el-----l~~aDiV 198 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAK----------AFGMKVIAYDPYISP-ERAAQLGVELV----SLDEL-----LARADFI 198 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHH----------hCCCEEEEECCCCCh-hHHHhcCCEEE----cHHHH-----HhhCCEE
Confidence 3467999999999999999997 789999999985432 12223333222 22223 3467878
Q ss_pred EEEcCCHHHHHH--HHHHHHHhCCC
Q 006034 482 MIMYTDKKRTIE--AVQRLRLAFPA 504 (663)
Q Consensus 482 v~~~~dd~~n~~--~~~~~r~~~~~ 504 (663)
++..+..+.+.. -......+.|+
T Consensus 199 ~l~lP~t~~t~~li~~~~l~~mk~g 223 (526)
T PRK13581 199 TLHTPLTPETRGLIGAEELAKMKPG 223 (526)
T ss_pred EEccCCChHhhcCcCHHHHhcCCCC
Confidence 777776543332 23344444444
No 489
>PRK05854 short chain dehydrogenase; Provisional
Probab=87.34 E-value=1.5 Score=46.35 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=51.5
Q ss_pred CCcEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh--------cCCCEEEecCCCHHHHHhc
Q 006034 403 SEPVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK--------LGFPILYGDASRPAVLLSA 473 (663)
Q Consensus 403 ~~~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~--------~~~~vi~GD~~~~~~L~~a 473 (663)
.+.++|.|. +-+|+.+++.|. +.|++|+++.+|+++.+...+ ....++..|.+|.+..+++
T Consensus 14 gk~~lITGas~GIG~~~a~~La----------~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~ 83 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLA----------AAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAAL 83 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHH
Confidence 356788875 669999999998 789999999999887655432 1356788999998876543
Q ss_pred ------CCCCCcEEEE
Q 006034 474 ------GITSPKAVMI 483 (663)
Q Consensus 474 ------~i~~a~~vv~ 483 (663)
...+.|.+|-
T Consensus 84 ~~~~~~~~~~iD~li~ 99 (313)
T PRK05854 84 GEQLRAEGRPIHLLIN 99 (313)
T ss_pred HHHHHHhCCCccEEEE
Confidence 2234565553
No 490
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=87.31 E-value=1.2 Score=41.45 Aligned_cols=61 Identities=20% Similarity=0.327 Sum_probs=46.1
Q ss_pred EcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----c---CCCEEEecCCCHHHHHhcCC-CCCcE
Q 006034 409 VGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----L---GFPILYGDASRPAVLLSAGI-TSPKA 480 (663)
Q Consensus 409 ~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~---~~~vi~GD~~~~~~L~~a~i-~~a~~ 480 (663)
||.|.++..+++.+ ..+.+++.+|.+++.++.+++ . ...++++|.++ +.+. + ++.|.
T Consensus 12 cG~G~~~~~l~~~~-----------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~---l~~~-~~~~~D~ 76 (152)
T PF13847_consen 12 CGTGRLLIQLAKEL-----------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED---LPQE-LEEKFDI 76 (152)
T ss_dssp -TTSHHHHHHHHHS-----------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC---GCGC-SSTTEEE
T ss_pred CcCcHHHHHHHHhc-----------CCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhc---cccc-cCCCeeE
Confidence 56678888888766 457789999999999888775 2 36788999988 3332 3 79998
Q ss_pred EEEE
Q 006034 481 VMIM 484 (663)
Q Consensus 481 vv~~ 484 (663)
|+..
T Consensus 77 I~~~ 80 (152)
T PF13847_consen 77 IISN 80 (152)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 8776
No 491
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=87.31 E-value=2.1 Score=38.04 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=54.4
Q ss_pred CCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEEEEEc-CC--HHHHHHHHHHHHHhCCCCcEEEE
Q 006034 434 TVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAVMIMY-TD--KKRTIEAVQRLRLAFPAIPIYAR 510 (663)
Q Consensus 434 ~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vv~~~-~d--d~~n~~~~~~~r~~~~~~~iia~ 510 (663)
+.|++|..+|.+.+. ++..+.+.-.++|.|.+.. .. .+.-..++..+|+.+|++++++-
T Consensus 26 ~~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G 87 (121)
T PF02310_consen 26 KAGHEVDILDANVPP------------------EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG 87 (121)
T ss_dssp HTTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE
T ss_pred HCCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 679999999887654 3344444445778766655 22 24445667778889999887776
Q ss_pred ecC--hhhHHHHHH-cCCCeEEcCch
Q 006034 511 AQD--MMHLLDLKK-AGATDAILENA 533 (663)
Q Consensus 511 ~~~--~~~~~~l~~-~Gad~vi~p~~ 533 (663)
=.. ......+++ .|+|.++.-+-
T Consensus 88 G~~~t~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 88 GPHATADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp ESSSGHHHHHHHHHHHTSEEEEEETT
T ss_pred CCchhcChHHHhccCcCcceecCCCh
Confidence 554 344455655 99999887664
No 492
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=87.30 E-value=1.1 Score=46.43 Aligned_cols=68 Identities=25% Similarity=0.254 Sum_probs=49.6
Q ss_pred cEEEE-cCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHH-HHHHHhcCCCEEEecCCCHHHHHhc-CCCCCcEE
Q 006034 405 PVVIV-GFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSV-VKESRKLGFPILYGDASRPAVLLSA-GITSPKAV 481 (663)
Q Consensus 405 ~viI~-G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~-~~~~~~~~~~vi~GD~~~~~~L~~a-~i~~a~~v 481 (663)
.|+|. |.|-+|...+.+|. +.|++|+|+|.-..- .+.+.....+.++||..|.+.|++. .-.+.|+|
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll----------~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaV 71 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLL----------KTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAV 71 (329)
T ss_pred eEEEecCcchhHHHHHHHHH----------HCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEE
Confidence 46677 46999999999998 899999999985543 3333322268999999999988764 22255555
Q ss_pred E
Q 006034 482 M 482 (663)
Q Consensus 482 v 482 (663)
+
T Consensus 72 i 72 (329)
T COG1087 72 V 72 (329)
T ss_pred E
Confidence 4
No 493
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=87.29 E-value=1.4 Score=54.65 Aligned_cols=115 Identities=19% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCc--chHH---------HHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCCHHH
Q 006034 401 EGSEPVVIVGFGQ--MGQV---------LANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASRPAV 469 (663)
Q Consensus 401 ~~~~~viI~G~g~--~g~~---------la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~~~~ 469 (663)
..+++++|+|.|. +|+. +++.|+ +.|++++++|.||+.+..-.+.....++-..+-+++
T Consensus 552 ~~~kkvlilG~G~~~ig~~~efdy~~v~~i~alk----------~~G~~vi~v~~npetvs~~~~~aD~~y~e~~~~e~v 621 (1066)
T PRK05294 552 SDRKKVLVLGSGPNRIGQGIEFDYCCVHAVLALR----------EAGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDV 621 (1066)
T ss_pred CCCceEEEECccccccccccccchhHHHHHHHHH----------HCCCEEEEEeCCccccccccchhhheeecCCCHHHH
Confidence 3567899999987 4544 589997 899999999999987542222112233323344445
Q ss_pred HHhcCCCCCcEEEEEcCCHHHHHHHHHHHHHhCCC-----CcEEEEecC-hhhHHHHHHcCCC
Q 006034 470 LLSAGITSPKAVMIMYTDKKRTIEAVQRLRLAFPA-----IPIYARAQD-MMHLLDLKKAGAT 526 (663)
Q Consensus 470 L~~a~i~~a~~vv~~~~dd~~n~~~~~~~r~~~~~-----~~iia~~~~-~~~~~~l~~~Gad 526 (663)
++-+.-++.|.++...+.+.. +..+..+.+.+.. ...+..+.| ....+.++++|+.
T Consensus 622 ~~i~~~e~~dgVi~~~g~~~~-~~la~~le~~Gi~ilg~s~~ai~~~~DK~~~~~~L~~~GIp 683 (1066)
T PRK05294 622 LEIIEKEKPKGVIVQFGGQTP-LKLAKALEAAGVPILGTSPDAIDLAEDRERFSKLLEKLGIP 683 (1066)
T ss_pred HHHHHHcCCCEEEEEeCchhH-HHHHHHHHHCCCceeCCCHHHHHHhCCHHHHHHHHHHcCcC
Confidence 555667788988887766533 3444455555421 112223333 3455677888886
No 494
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=87.28 E-value=2.9 Score=44.78 Aligned_cols=69 Identities=19% Similarity=0.334 Sum_probs=44.9
Q ss_pred cEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEE-eCChHHHHHHHh-cCCCEEEec----------------CCC
Q 006034 405 PVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAF-DLNPSVVKESRK-LGFPILYGD----------------ASR 466 (663)
Q Consensus 405 ~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvi-d~d~~~~~~~~~-~~~~vi~GD----------------~~~ 466 (663)
+|.|+|+|++|+.+++.+.+ .++.+++.+ |.+++....+.+ .|+.. +|. .+.
T Consensus 3 kVaI~G~GrIGr~va~al~~---------~~d~eLvav~d~~~~~~~~la~~~G~~~-~~~~~~~~~~~~~~~i~V~~~~ 72 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAA---------QPDMELVGVAKTKPDYEARVAVEKGYPL-YVADPEREKAFEEAGIPVAGTI 72 (341)
T ss_pred EEEEECCCHHHHHHHHHHhc---------CCCcEEEEEECCChHHHHHHHHhcCCCc-cccCccccccccCCceEEcCCh
Confidence 68999999999999999872 567776665 556655554433 34332 111 112
Q ss_pred HHHHHhcCCCCCcEEEEEcCCH
Q 006034 467 PAVLLSAGITSPKAVMIMYTDK 488 (663)
Q Consensus 467 ~~~L~~a~i~~a~~vv~~~~dd 488 (663)
++.+ +++|.|+.+|+.+
T Consensus 73 ~el~-----~~vDVVIdaT~~~ 89 (341)
T PRK04207 73 EDLL-----EKADIVVDATPGG 89 (341)
T ss_pred hHhh-----ccCCEEEECCCch
Confidence 2222 4689999998875
No 495
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=87.23 E-value=25 Score=39.27 Aligned_cols=89 Identities=21% Similarity=0.312 Sum_probs=49.8
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEE-EEeCChHHHHHHHhcCCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFV-AFDLNPSVVKESRKLGFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vv-vid~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
+++++|+|.|..|+.+++.+++ ..+.+++++ .+|.|++..... -.+.+++ |+ .| ..+...-.++|.+
T Consensus 125 ~rrvlIiGag~~~~~l~~~l~~-------~~~~g~~vvGfidd~~~~~~~~-i~g~pVl-g~-~~--l~~~i~~~~id~V 192 (456)
T TIGR03022 125 GRPAVIIGAGQNAAILYRALQS-------NPQLGLRPLAVVDTDPAASGRL-LTGLPVV-GA-DD--ALRLYARTRYAYV 192 (456)
T ss_pred CceEEEEeCCHHHHHHHHHHhh-------CccCCcEEEEEEeCCccccccc-cCCCccc-Ch-hH--HHHHHHhCCCCEE
Confidence 4579999999999999999962 012345544 467665432211 1345543 44 32 2222222456777
Q ss_pred EEEcCCH--HHHHHHHHHHHHhCC
Q 006034 482 MIMYTDK--KRTIEAVQRLRLAFP 503 (663)
Q Consensus 482 v~~~~dd--~~n~~~~~~~r~~~~ 503 (663)
+++.++. +.-..+...+++.+.
T Consensus 193 iIAip~~~~~~~~~ll~~l~~~~v 216 (456)
T TIGR03022 193 IVAMPGTQAEDMARLVRKLGALHF 216 (456)
T ss_pred EEecCCccHHHHHHHHHHHHhCCC
Confidence 7887743 233344555665544
No 496
>PRK05599 hypothetical protein; Provisional
Probab=87.22 E-value=1.3 Score=44.85 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=49.0
Q ss_pred cEEEEcC-CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHh----cC---CCEEEecCCCHHHHHhc---
Q 006034 405 PVVIVGF-GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRK----LG---FPILYGDASRPAVLLSA--- 473 (663)
Q Consensus 405 ~viI~G~-g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~----~~---~~vi~GD~~~~~~L~~a--- 473 (663)
.++|.|. +.+|+.+++.|. + |++|+++++++++.+.+.+ .+ ..++..|.+|++-.+++
T Consensus 2 ~vlItGas~GIG~aia~~l~----------~-g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 70 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLC----------H-GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQ 70 (246)
T ss_pred eEEEEeCccHHHHHHHHHHh----------C-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHH
Confidence 4778887 459999999995 4 8999999999988765533 22 45778899998776542
Q ss_pred ---CCCCCcEEEEE
Q 006034 474 ---GITSPKAVMIM 484 (663)
Q Consensus 474 ---~i~~a~~vv~~ 484 (663)
...+-|.+|..
T Consensus 71 ~~~~~g~id~lv~n 84 (246)
T PRK05599 71 TQELAGEISLAVVA 84 (246)
T ss_pred HHHhcCCCCEEEEe
Confidence 12355666543
No 497
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=87.18 E-value=1.1 Score=50.33 Aligned_cols=105 Identities=12% Similarity=0.054 Sum_probs=66.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhc-CCCEEEecCCCHHHHHhcCCCCCcEE
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKL-GFPILYGDASRPAVLLSAGITSPKAV 481 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~-~~~vi~GD~~~~~~L~~a~i~~a~~v 481 (663)
.++++|+|.|..|+.++..|. +.|.++.+.++++++.+.+.+. +..+ .+.+.+. ...++|.+
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~----------~~G~~V~i~~R~~~~~~~la~~~~~~~-----~~~~~~~--~l~~~DiV 394 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLA----------RAGAELLIFNRTKAHAEALASRCQGKA-----FPLESLP--ELHRIDII 394 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHH----------HCCCEEEEEeCCHHHHHHHHHHhccce-----echhHhc--ccCCCCEE
Confidence 357999999999999999998 7888999999999988877653 2111 1112222 25689999
Q ss_pred EEEcCCHHHHHHHHHHHHHhCCCCcEEEEecChh---hHHHHHHcCCCeEEcCch
Q 006034 482 MIMYTDKKRTIEAVQRLRLAFPAIPIYARAQDMM---HLLDLKKAGATDAILENA 533 (663)
Q Consensus 482 v~~~~dd~~n~~~~~~~r~~~~~~~iia~~~~~~---~~~~l~~~Gad~vi~p~~ 533 (663)
|.+++.+.. +. .... . .++=.+.++. ..+..++.|+ .+++-..
T Consensus 395 InatP~g~~-~~-----~~l~-~-~v~D~~Y~P~~T~ll~~A~~~G~-~~~~G~~ 440 (477)
T PRK09310 395 INCLPPSVT-IP-----KAFP-P-CVVDINTLPKHSPYTQYARSQGS-SIIYGYE 440 (477)
T ss_pred EEcCCCCCc-ch-----hHHh-h-hEEeccCCCCCCHHHHHHHHCcC-EEECcHH
Confidence 999887631 11 1111 1 2333333332 4455667787 4556654
No 498
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=87.15 E-value=4.4 Score=42.01 Aligned_cols=103 Identities=14% Similarity=0.129 Sum_probs=63.2
Q ss_pred chHHHHHHhcccccCCCCCCCCCCCEEEEeCChHHHHHHHhcCCCEEEecCCC---H-HHHH-hcCCCCCcEEEEEcCCH
Q 006034 414 MGQVLANLLSAPLASGSDGNTVGWPFVAFDLNPSVVKESRKLGFPILYGDASR---P-AVLL-SAGITSPKAVMIMYTDK 488 (663)
Q Consensus 414 ~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~~~~~~~~~~~~~vi~GD~~~---~-~~L~-~a~i~~a~~vv~~~~dd 488 (663)
+|..++-.|. +.|++|.+++++ ++.+.+++.|..+...+... + .+.. ....+.+|.+++++...
T Consensus 2 iG~~~a~~L~----------~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~ 70 (293)
T TIGR00745 2 VGSLYGAYLA----------RAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAY 70 (293)
T ss_pred chHHHHHHHH----------hCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccch
Confidence 5788888897 789999999997 67777887776543211110 0 1111 01245899999998875
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEecChhhHHHHHH-cCCCe
Q 006034 489 KRTIEAVQRLRLAFPAIPIYARAQDMMHLLDLKK-AGATD 527 (663)
Q Consensus 489 ~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~-~Gad~ 527 (663)
...-.+......++++..|+...|--.+.+.+.+ .+.+.
T Consensus 71 ~~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~ 110 (293)
T TIGR00745 71 QTEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPARR 110 (293)
T ss_pred hHHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCccC
Confidence 4322222333445677677777777666666655 34433
No 499
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.14 E-value=1.4 Score=44.98 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=51.0
Q ss_pred CcEEEEcC---CcchHHHHHHhcccccCCCCCCCCCCCEEEEeCCh--HHHHHHHh---cCCCEEEecCCCHHHHHhc--
Q 006034 404 EPVVIVGF---GQMGQVLANLLSAPLASGSDGNTVGWPFVAFDLNP--SVVKESRK---LGFPILYGDASRPAVLLSA-- 473 (663)
Q Consensus 404 ~~viI~G~---g~~g~~la~~L~~~~~~~~~~~~~~~~vvvid~d~--~~~~~~~~---~~~~vi~GD~~~~~~L~~a-- 473 (663)
+.++|.|. +.+|+.+++.|. ++|++|++.++++ +..+.+.+ .....+..|.+|++-.+++
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la----------~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~ 77 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQ----------EQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLAD 77 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHH----------HCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHH
Confidence 57889996 689999999997 7899999998664 44454443 2356788999999866542
Q ss_pred ----CCCCCcEEEE
Q 006034 474 ----GITSPKAVMI 483 (663)
Q Consensus 474 ----~i~~a~~vv~ 483 (663)
...+.|.+|.
T Consensus 78 ~~~~~~g~iD~li~ 91 (256)
T PRK07889 78 RVREHVDGLDGVVH 91 (256)
T ss_pred HHHHHcCCCcEEEE
Confidence 2345676655
No 500
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=87.11 E-value=3.1 Score=43.04 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=53.6
Q ss_pred CCcEEEEcCCcchHHHHHHhcccccCCCCCCCCCCC-EEEEeCChHHHHHHHhcCCCEEEecCCC-HHHHHh-cCCCCCc
Q 006034 403 SEPVVIVGFGQMGQVLANLLSAPLASGSDGNTVGWP-FVAFDLNPSVVKESRKLGFPILYGDASR-PAVLLS-AGITSPK 479 (663)
Q Consensus 403 ~~~viI~G~g~~g~~la~~L~~~~~~~~~~~~~~~~-vvvid~d~~~~~~~~~~~~~vi~GD~~~-~~~L~~-a~i~~a~ 479 (663)
.+.++|.|.|.+|...++.++ ..|.+ |+++|.++++.+.+++.|...+. |..+ .+.+++ .+-..+|
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak----------~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAA----------AAGAARVVAADPSPDRRELALSFGATALA-EPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHH----------HcCCCEEEEECCCHHHHHHHHHcCCcEec-CchhhHHHHHHHhCCCCCC
Confidence 457999999999999999886 67886 88899999999888887764432 2222 222222 2334689
Q ss_pred EEEEEcCCHH
Q 006034 480 AVMIMYTDKK 489 (663)
Q Consensus 480 ~vv~~~~dd~ 489 (663)
.++=+++.+.
T Consensus 190 ~vid~~G~~~ 199 (280)
T TIGR03366 190 VALEFSGATA 199 (280)
T ss_pred EEEECCCChH
Confidence 8887776654
Done!