BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006035
(663 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Query: 436 DPCVPQQHPWSG-ADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS 494
+PC + G FD +D + L G++P I + +L +NL N
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLD---MSYNMLSGYIPKEIGSMPYLFILNLGHND 667
Query: 495 IRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGR 554
I G+IP +G + L +LDLS N +G IP+++ LT L ++L+ N LSG +P G+
Sbjct: 668 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM--GQ 725
Query: 555 LLHRASFNFTDNAGLCGIPGLRACGP 580
F +N GLCG P L C P
Sbjct: 726 FETFPPAKFLNNPGLCGYP-LPRCDP 750
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%)
Query: 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 519
++ L LD L G +P+G+S +L I+LS N + G IP +G + +L +L LS N F
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526
Query: 520 NGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 551
+G+IP LG +L L+LN N +G +PAA+
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 408 SKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLD 467
S LPE + L +LDL ++G P +P CQ + K + L L
Sbjct: 356 SGELPESLTNLSASLLTLDLSSN-NFSG-PILPNL-------CQ----NPKNTLQELYLQ 402
Query: 468 NQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 527
N G G +P +S L S++LS N + G IPSSLG+++ L L L N G IP+ L
Sbjct: 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462
Query: 528 GQLTALRRLNLNGNTLSGRVPAAL 551
+ L L L+ N L+G +P+ L
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGL 486
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 471 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 530
L G +P + ++ L+++ L N + G IPS L +L + LS N G IP+ +G+L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 531 TALRRLNLNGNTLSGRVPAALG 552
L L L+ N+ SG +PA LG
Sbjct: 514 ENLAILKLSNNSFSGNIPAELG 535
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 475 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 534
L +G +L+HL +SGN I G + S +LE LD+S N F+ IP LG +AL+
Sbjct: 173 LSDGCGELKHLA---ISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQ 226
Query: 535 RLNLNGNTLSGRVPAAL 551
L+++GN LSG A+
Sbjct: 227 HLDISGNKLSGDFSRAI 243
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 464 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 523
L + L G IS L+ +N+S N G IP + SL+ L L+ N F G I
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 285
Query: 524 PESL-GQLTALRRLNLNGNTLSGRVPAALG 552
P+ L G L L+L+GN G VP G
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 493 NSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPESLGQLTA-LRRLNLNGNTLSGRV 547
N+ G +P +L + L+VLDLS+N F+G +PESL L+A L L+L+ N SG +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 466 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 525
L+ QG+R +++L N++ G + S+ LD+SYN +G IP+
Sbjct: 594 LEFQGIRS---EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 526 SLGQLTALRRLNLNGNTLSGRVPAALG 552
+G + L LNL N +SG +P +G
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVG 677
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 479 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538
+S+ +L+ +++S N+ IP LG ++L+ LD+S N +G ++ T L+ LN+
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 254
Query: 539 NGNTLSGRVP 548
+ N G +P
Sbjct: 255 SSNQFVGPIP 264
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 485 LQSINLSGNSIR--GAIPSSLGTIASLEVLDLSYNFFNGS------IPESLGQLTALRRL 536
L+ +N+S N++ G + L + SLEVLDLS N +G+ + + G+ L+ L
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGE---LKHL 183
Query: 537 NLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 578
++GN +SG V + R ++ + + N GIP L C
Sbjct: 184 AISGNKISGDVDVS---RCVNLEFLDVSSNNFSTGIPFLGDC 222
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 7/146 (4%)
Query: 436 DPCVPQQHPWSG-ADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS 494
+PC + G FD +D + L G++P I + +L +NL N
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLD---MSYNMLSGYIPKEIGSMPYLFILNLGHND 664
Query: 495 IRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGR 554
I G+IP +G + L +LDLS N +G IP+++ LT L ++L+ N LSG +P G+
Sbjct: 665 ISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM--GQ 722
Query: 555 LLHRASFNFTDNAGLCGIPGLRACGP 580
F +N GLCG P L C P
Sbjct: 723 FETFPPAKFLNNPGLCGYP-LPRCDP 747
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 56/92 (60%)
Query: 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 519
++ L LD L G +P+G+S +L I+LS N + G IP +G + +L +L LS N F
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 523
Query: 520 NGSIPESLGQLTALRRLNLNGNTLSGRVPAAL 551
+G+IP LG +L L+LN N +G +PAA+
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 408 SKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLD 467
S LPE + L +LDL ++G P +P CQ + K + L L
Sbjct: 353 SGELPESLTNLSASLLTLDLSSN-NFSG-PILPNL-------CQ----NPKNTLQELYLQ 399
Query: 468 NQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL 527
N G G +P +S L S++LS N + G IPSSLG+++ L L L N G IP+ L
Sbjct: 400 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 459
Query: 528 GQLTALRRLNLNGNTLSGRVPAAL 551
+ L L L+ N L+G +P+ L
Sbjct: 460 MYVKTLETLILDFNDLTGEIPSGL 483
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%)
Query: 471 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 530
L G +P + ++ L+++ L N + G IPS L +L + LS N G IP+ +G+L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 531 TALRRLNLNGNTLSGRVPAALG 552
L L L+ N+ SG +PA LG
Sbjct: 511 ENLAILKLSNNSFSGNIPAELG 532
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Query: 475 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 534
L +G +L+HL +SGN I G + S +LE LD+S N F+ IP LG +AL+
Sbjct: 170 LSDGCGELKHLA---ISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIP-FLGDCSALQ 223
Query: 535 RLNLNGNTLSGRVPAAL 551
L+++GN LSG A+
Sbjct: 224 HLDISGNKLSGDFSRAI 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 464 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 523
L + L G IS L+ +N+S N G IP + SL+ L L+ N F G I
Sbjct: 225 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI 282
Query: 524 PESL-GQLTALRRLNLNGNTLSGRVPAALG 552
P+ L G L L+L+GN G VP G
Sbjct: 283 PDFLSGACDTLTGLDLSGNHFYGAVPPFFG 312
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 466 LDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE 525
L+ QG+R +++L N++ G + S+ LD+SYN +G IP+
Sbjct: 591 LEFQGIRS---EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 526 SLGQLTALRRLNLNGNTLSGRVPAALG 552
+G + L LNL N +SG +P +G
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVG 674
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 493 NSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPESLGQLTA-LRRLNLNGNTLSGRV 547
N+ G +P +L + L+VLDLS+N F+G +PESL L+A L L+L+ N SG +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 381
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 479 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538
+S+ +L+ +++S N+ IP LG ++L+ LD+S N +G ++ T L+ LN+
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI 251
Query: 539 NGNTLSGRVP 548
+ N G +P
Sbjct: 252 SSNQFVGPIP 261
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 485 LQSINLSGNSIR--GAIPSSLGTIASLEVLDLSYNFFNGS------IPESLGQLTALRRL 536
L+ +N+S N++ G + L + SLEVLDLS N +G+ + + G+ L+ L
Sbjct: 125 LKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGE---LKHL 180
Query: 537 NLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 578
++GN +SG V + R ++ + + N GIP L C
Sbjct: 181 AISGNKISGDVDVS---RCVNLEFLDVSSNNFSTGIPFLGDC 219
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 465 GLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP 524
G++N L G +P I+KL L + ++ ++ GAIP L I +L LD SYN +G++P
Sbjct: 85 GINN--LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 525 ESLGQLTALRRLNLNGNTLSGRVPAALG 552
S+ L L + +GN +SG +P + G
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYG 170
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 483 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 542
++ Q I+L+ NS+ + +G +L LDL N G++P+ L QL L LN++ N
Sbjct: 221 KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 543 LSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 578
L G +P GG L + +N LCG P L AC
Sbjct: 280 LCGEIPQ--GGNLQRFDVSAYANNKCLCGSP-LPAC 312
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 471 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQL 530
+ G +P+ +S+++ L +++ S N++ G +P S+ ++ +L + N +G+IP+S G
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 531 TAL-RRLNLNGNTLSGRVP 548
+ L + ++ N L+G++P
Sbjct: 173 SKLFTSMTISRNRLTGKIP 191
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP 500
++GL L N + G LP G+++L+ L S+N+S N++ G IP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 475 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTA 532
LP+G+ KL +L +NL+ N ++ + +L LDLSYN S+PE + +LT
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQ 182
Query: 533 LRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLR 576
L+ L L N L VP + RL DN C PG+R
Sbjct: 183 LKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 225
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 474 FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL 533
+P +S +HL I+LS N I S + L L LSYN P + L +L
Sbjct: 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 534 RRLNLNGNTLS 544
R L+L+GN +S
Sbjct: 105 RLLSLHGNDIS 115
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 48/126 (38%), Gaps = 5/126 (3%)
Query: 448 ADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA 507
+D F R H + L L L G PN H+Q + L N I+ +
Sbjct: 46 SDGLFGRLPH---LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLH 102
Query: 508 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 567
L+ L+L N + +P S L +L LNL N + A L + S N A
Sbjct: 103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLN--GGA 160
Query: 568 GLCGIP 573
CG P
Sbjct: 161 ARCGAP 166
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 488 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRV 547
+NLS N + G++ L ++VLDL N SIP+ + L AL+ LN+ N L V
Sbjct: 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKS-V 488
Query: 548 PAALGGRLLHRASFNFTDNAGLCGIPGLR 576
P + RL DN C PG+R
Sbjct: 489 PDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 520
+ L L N + + + + +LQ++ L+ N I S ++ SLE LDLSYN+ +
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 521 GSIPESLGQLTALRRLNLNGN 541
L++L LNL GN
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGN 108
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 520
+ L L N + + + + +LQ++ L+ N I S ++ SLE LDLSYN+ +
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 521 GSIPESLGQLTALRRLNLNGN 541
L++L LNL GN
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGN 134
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 456 SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSL-GTIASLEVLDL 514
SH ++ L L + N L HL +NLS N + G+I S + + LEVLDL
Sbjct: 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDL 354
Query: 515 SYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 573
SYN +S L L+ L L+ N L VP + RL N C P
Sbjct: 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 24/135 (17%)
Query: 465 GLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN------ 517
LD L+ F + I K L + L+GNS+ +P+ + +++L VLDLS+N
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLP 286
Query: 518 -------------FFNG---SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASF 561
FF+ ++P G L L+ L + GN L + L + + F
Sbjct: 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF 346
Query: 562 NFTDNAGLCGIPGLR 576
DN +P R
Sbjct: 347 YLRDNRPEIPLPHER 361
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 479 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-LTALRRLN 537
+ LRHLQ +NLS N G + LE+LD+++ + P S Q L LR LN
Sbjct: 371 LKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLN 430
Query: 538 LNGNTLSGRVPAALGG 553
L+ L L G
Sbjct: 431 LSHCLLDTSNQHLLAG 446
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 474 FLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYN---FFNGSIPESLGQ 529
F+P + L +L+S++L N I +P + T +L+VLD N + + SL Q
Sbjct: 121 FIP--VHNLENLESLHLGSNHISSINLPENFPT-QNLKVLDFQNNAIHYISRKDTNSLEQ 177
Query: 530 LTALRRLNLNGNTLSGRVPAALGGRLLHRASF 561
T L LN NGN + G P A ++ F
Sbjct: 178 ATNLS-LNFNGNDIKGIEPGAFISKIFQSLKF 208
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 483 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 542
+ L S+N+S N + I L ++VLDL N SIP+ + +L AL+ LN+ N
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQ 455
Query: 543 LSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL 575
L VP + RL N C P +
Sbjct: 456 LKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 482 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 541
L HL ++ L+GN I+ P S + SLE L +GQL L++LN+ N
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 542 TL-SGRVPAALGG--RLLH-RASFNFTDNAGLCGIPGLR 576
+ S ++PA L+H S+N+ + + LR
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 275 RSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTI 334
R+++ +K N + LYQT + DS Y + + Y + L FAE+
Sbjct: 40 RASDYGMKLPILRSNPEDQVLYQTERYNEDS---FGYDIPIKEEGEYVLVLKFAEV--YF 94
Query: 335 TGVGQRVFDILINGDIAFQGVDVVKMSG 362
Q+VFD+ +NG + +D+ G
Sbjct: 95 AQSQQKVFDVRVNGHTVVKDLDIFDRVG 122
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 275 RSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTI 334
R+++ +K N + LYQT + DS Y + + Y + L FAE+
Sbjct: 36 RASDYGMKLPILRSNPEDQVLYQTERYNEDS---FGYDIPIKEEGEYVLVLKFAEV--YF 90
Query: 335 TGVGQRVFDILINGDIAFQGVDVVKMSG 362
Q+VFD+ +NG + +D+ G
Sbjct: 91 AQSQQKVFDVRVNGHTVVKDLDIFDRVG 118
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 482 LRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 541
L HL ++ L+GN I+ P S + SLE L +GQL L++LN+ N
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 542 TL-SGRVPAALGG--RLLH-RASFNFTDNAGLCGIPGLR 576
+ S ++PA L+H S+N+ + + LR
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 172
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 485 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
L ++L GN I +SL + +L L LS+N + SL LR L+LN N L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 545 GRVPAALG 552
+VP L
Sbjct: 254 -KVPGGLA 260
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 485 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
L ++L GN I +SL + +L L LS+N + SL LR L+LN N L
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 545 GRVPAALG 552
+VP L
Sbjct: 254 -KVPGGLA 260
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 506 IASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
++ L+VL L++N+ N P LTALR L+LN N L+
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 475 LPNGI-SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTA 532
LP+G+ KL +L + L N ++ + +L LDL N S+PE + +LT
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVFDKLTQ 182
Query: 533 LRRLNLNGNTLSGRVPAALGGRL 555
L++L+LN N L VP + RL
Sbjct: 183 LKQLSLNDNQLKS-VPDGVFDRL 204
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 479 ISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-LTALRRLN 537
+ L HLQ++NLS N G + LE+LDL++ + + P+S Q L L+ LN
Sbjct: 369 LKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLN 428
Query: 538 L 538
L
Sbjct: 429 L 429
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 474 FLPNGISKL--------RHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYN---FFNG 521
F+ GIS + + L+S+ L N I +P T L+VLD N + +
Sbjct: 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT-EKLKVLDFQNNAIHYLSK 170
Query: 522 SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 566
SL Q T L LNLNGN ++G P A + +F T N
Sbjct: 171 EDMSSLQQATNLS-LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214
>pdb|1O6O|D Chain D, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|E Chain E, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
pdb|1O6O|F Chain F, Importin Beta Aa1-442 Bound To Five Fxfg Repeats From
Yeast Nsp1p. Second Crystal Form
Length = 119
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 240 GNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQAS--KAPNFYPEALYQ 297
G+ KP F D D P SFG A++++ ++ S S P E
Sbjct: 14 GSSKPAFSFGAKPDEKKNDEVSKPAFSFGAKANEKKESDESKSAFSFGSKPTGKEEGDGA 73
Query: 298 TALVSTDSQPDLQYTMD 314
A +S ++P+ Q + D
Sbjct: 74 KAAISFGAKPEEQKSSD 90
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 488 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
+NL+ N +R P++ + L +LD +N + PE L L+ LNL N LS
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELS 86
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 477 NGI-SKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 534
NGI + L L+ + ++GNS + +P + +L LDLS P + L++L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 535 RLNLNGNTLSGRVPAALGGRL 555
LN+ N L VP + RL
Sbjct: 498 VLNMASNQLKS-VPDGIFDRL 517
>pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK8|B Chain B, Structure Of Holo Form Of Vibrio Cholerae Cqsa
pdb|2WK9|A Chain A, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WK9|B Chain B, Structure Of Plp_thr Aldimine Form Of Vibrio Cholerae Cqsa
pdb|2WKA|A Chain A, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
pdb|2WKA|B Chain B, Structure Of Plp_thr_decanoyl-Coa Aldimine Form Of Vibrio
Cholerae Cqsa
Length = 389
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 432 GWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLS 491
GWN + + Q + D +H + +G N F+ N LR L +
Sbjct: 108 GWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHGP 167
Query: 492 GNSIRGAIPSSLGTIASL-EVLDLSYNF 518
G + +I S+LGTIA L E++++S F
Sbjct: 168 GIIVVDSIYSTLGTIAPLAELVNISKEF 195
>pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa
pdb|2WK7|B Chain B, Structure Of Apo Form Of Vibrio Cholerae Cqsa
Length = 393
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 432 GWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLS 491
GWN + + Q + D +H + +G N F+ N LR L +
Sbjct: 108 GWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHGP 167
Query: 492 GNSIRGAIPSSLGTIASL-EVLDLSYNF 518
G + +I S+LGTIA L E++++S F
Sbjct: 168 GIIVVDSIYSTLGTIAPLAELVNISKEF 195
>pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3HQT|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa
pdb|3KKI|B Chain B, Plp-Dependent Acyl-Coa Transferase Cqsa
Length = 409
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 432 GWNGDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLS 491
GWN + + Q + D +H + +G N F+ N LR L +
Sbjct: 128 GWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRHGP 187
Query: 492 GNSIRGAIPSSLGTIASL-EVLDLSYNF 518
G + +I S+LGTIA L E++++S F
Sbjct: 188 GIIVVDSIYSTLGTIAPLAELVNISKEF 215
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Query: 464 LGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI 523
L L ++ + L HL+ + L NSIR + +ASL L+L N+
Sbjct: 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 524 PESLGQLTALRRLNLNGNTLSG-------RVPAALGGRLLHRASFNFTDNAGLCGIPGLR 576
+ L+ LR L L N + RVP+ + L + G+ L+
Sbjct: 140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLK 199
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 485 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 545 GRVPAAL 551
P L
Sbjct: 138 TLPPGLL 144
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 485 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 545 GRVPAAL 551
P L
Sbjct: 138 TLPPGLL 144
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 485 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 545 GRVPAAL 551
P L
Sbjct: 138 TLPPGLL 144
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 493 NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 541
N+I G SLG SLE LDLS N + G L++L+ LNL GN
Sbjct: 89 NTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 488 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
+NL+ N +R ++ + L LD+ +N + PE +L L+ LNL N LS
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 498 AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 557
AIPS++ A + LDL N + ++ +LT LR L LN N L +PA + L +
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKN 86
Query: 558 RASFNFTDN 566
+ TDN
Sbjct: 87 LETLWVTDN 95
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 485 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 545 GRVPAAL 551
P L
Sbjct: 138 TLPPGLL 144
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 485 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 545 GRVPAAL 551
P L
Sbjct: 138 TLPPGLL 144
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 493 NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 541
N+I G SLG SLE LDLS N + G L++L+ LNL GN
Sbjct: 63 NTIEGDAFYSLG---SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 488 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
+NL+ N +R ++ + L LD+ +N + PE +L L+ LNL N LS
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 485 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
L +++LS N ++ ++P T+ +L VLD+S+N +L L L+ L L GN L
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 545 GRVPAAL 551
P L
Sbjct: 138 TLPPGLL 144
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 488 INLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544
+NL+ N +R ++ + L LD+ +N + PE +L L+ LNL N LS
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,579,716
Number of Sequences: 62578
Number of extensions: 897358
Number of successful extensions: 2287
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2158
Number of HSP's gapped (non-prelim): 143
length of query: 663
length of database: 14,973,337
effective HSP length: 105
effective length of query: 558
effective length of database: 8,402,647
effective search space: 4688677026
effective search space used: 4688677026
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)