Query 006035
Match_columns 663
No_of_seqs 531 out of 4051
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 17:25:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006035.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006035hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 3E-107 7E-112 929.4 56.8 606 58-663 17-623 (623)
2 PF12819 Malectin_like: Carboh 100.0 2.2E-63 4.7E-68 529.9 32.4 323 69-403 1-347 (347)
3 PLN03150 hypothetical protein; 99.8 1.9E-19 4.1E-24 206.8 21.3 88 485-573 420-507 (623)
4 PF11721 Malectin: Di-glucose 99.8 8.8E-20 1.9E-24 175.9 4.4 142 234-387 2-152 (174)
5 PF11721 Malectin: Di-glucose 99.5 1.8E-13 4E-18 131.9 10.7 134 67-209 3-174 (174)
6 PLN00113 leucine-rich repeat r 99.4 2.8E-13 6.1E-18 164.9 12.6 110 460-570 476-585 (968)
7 PLN00113 leucine-rich repeat r 99.4 7.3E-13 1.6E-17 161.3 13.1 149 410-568 26-200 (968)
8 PF12819 Malectin_like: Carboh 98.8 1E-08 2.2E-13 109.9 9.8 158 237-408 1-166 (347)
9 KOG0617 Ras suppressor protein 98.8 2.9E-10 6.4E-15 105.5 -2.8 91 460-553 34-125 (264)
10 KOG4194 Membrane glycoprotein 98.6 6.4E-09 1.4E-13 112.6 -0.9 106 461-567 319-427 (873)
11 KOG0617 Ras suppressor protein 98.5 6.7E-09 1.4E-13 96.6 -2.0 104 461-568 58-185 (264)
12 PF13855 LRR_8: Leucine rich r 98.4 8.4E-08 1.8E-12 75.7 2.1 60 484-543 2-61 (61)
13 KOG0618 Serine/threonine phosp 98.4 1.3E-07 2.9E-12 107.7 2.3 105 460-569 384-489 (1081)
14 PF14580 LRR_9: Leucine-rich r 98.4 3E-07 6.6E-12 88.4 4.0 103 460-568 20-125 (175)
15 KOG0444 Cytoskeletal regulator 98.3 8.4E-08 1.8E-12 104.6 0.0 104 461-567 128-256 (1255)
16 KOG0472 Leucine-rich repeat pr 98.3 1.2E-07 2.7E-12 98.9 0.3 105 461-569 437-541 (565)
17 KOG4194 Membrane glycoprotein 98.3 4.4E-07 9.5E-12 98.7 3.9 107 460-567 126-232 (873)
18 PF13855 LRR_8: Leucine rich r 98.3 3.9E-07 8.5E-12 71.8 2.7 60 460-519 2-61 (61)
19 KOG0444 Cytoskeletal regulator 98.2 2.4E-07 5.2E-12 101.1 -1.1 110 460-573 269-379 (1255)
20 KOG3593 Predicted receptor-lik 98.1 2.8E-06 6.1E-11 84.7 5.1 107 292-403 107-228 (355)
21 KOG4237 Extracellular matrix p 98.1 8.7E-07 1.9E-11 92.5 0.6 94 478-572 269-362 (498)
22 PRK15387 E3 ubiquitin-protein 97.9 1.6E-05 3.5E-10 92.7 6.7 77 484-570 383-459 (788)
23 PF14580 LRR_9: Leucine-rich r 97.9 1.3E-05 2.9E-10 77.1 4.6 85 478-567 14-99 (175)
24 KOG0472 Leucine-rich repeat pr 97.9 2.3E-06 5E-11 89.5 -1.1 103 473-579 425-528 (565)
25 KOG0618 Serine/threonine phosp 97.8 1.1E-06 2.3E-11 100.4 -4.3 103 460-567 360-463 (1081)
26 PLN03210 Resistant to P. syrin 97.8 5.3E-05 1.2E-09 94.0 9.1 107 460-572 779-885 (1153)
27 KOG4237 Extracellular matrix p 97.8 3.6E-06 7.8E-11 88.0 -1.3 119 446-566 49-174 (498)
28 KOG1259 Nischarin, modulator o 97.7 5.3E-06 1.1E-10 83.8 -0.5 102 460-568 308-411 (490)
29 PRK15370 E3 ubiquitin-protein 97.7 5.1E-05 1.1E-09 88.9 7.1 94 461-567 222-315 (754)
30 KOG4579 Leucine-rich repeat (L 97.7 4.7E-06 1E-10 75.3 -1.9 89 460-551 54-142 (177)
31 PLN03210 Resistant to P. syrin 97.7 9.5E-05 2.1E-09 91.8 8.8 106 460-569 612-717 (1153)
32 cd00116 LRR_RI Leucine-rich re 97.7 1.3E-05 2.7E-10 84.7 0.7 107 461-567 139-261 (319)
33 KOG0532 Leucine-rich repeat (L 97.6 1.1E-05 2.4E-10 88.0 -0.0 103 461-569 145-247 (722)
34 PRK15370 E3 ubiquitin-protein 97.6 7.2E-05 1.6E-09 87.7 6.4 76 483-568 325-400 (754)
35 cd00116 LRR_RI Leucine-rich re 97.6 1.2E-05 2.7E-10 84.8 -0.1 107 461-567 110-232 (319)
36 PRK15387 E3 ubiquitin-protein 97.6 4E-05 8.8E-10 89.5 3.9 85 460-553 383-467 (788)
37 KOG1259 Nischarin, modulator o 97.6 8.1E-06 1.8E-10 82.5 -2.3 100 461-567 286-385 (490)
38 PF12799 LRR_4: Leucine Rich r 97.5 7.6E-05 1.6E-09 54.6 3.0 36 508-544 2-37 (44)
39 KOG1859 Leucine-rich repeat pr 97.5 5.5E-06 1.2E-10 92.4 -4.7 106 460-571 188-294 (1096)
40 KOG0532 Leucine-rich repeat (L 97.5 5.2E-06 1.1E-10 90.4 -4.9 100 461-567 123-222 (722)
41 COG4886 Leucine-rich repeat (L 97.5 6.1E-05 1.3E-09 82.4 3.2 103 461-568 142-244 (394)
42 PF12799 LRR_4: Leucine Rich r 97.3 9.2E-05 2E-09 54.2 1.0 37 483-520 1-37 (44)
43 KOG4579 Leucine-rich repeat (L 97.2 1.8E-05 3.9E-10 71.6 -4.0 100 463-567 31-134 (177)
44 COG4886 Leucine-rich repeat (L 97.1 0.00019 4.1E-09 78.6 1.3 102 461-567 165-266 (394)
45 KOG4658 Apoptotic ATPase [Sign 96.7 0.00065 1.4E-08 81.1 1.7 103 461-565 547-651 (889)
46 KOG1859 Leucine-rich repeat pr 96.2 0.00038 8.2E-09 78.2 -4.2 95 465-567 170-265 (1096)
47 KOG0531 Protein phosphatase 1, 96.0 0.0029 6.3E-08 69.9 1.5 79 461-544 97-175 (414)
48 KOG3207 Beta-tubulin folding c 96.0 0.0022 4.8E-08 68.5 0.5 83 461-544 224-314 (505)
49 KOG4658 Apoptotic ATPase [Sign 95.9 0.0037 8E-08 74.8 2.3 82 460-542 572-653 (889)
50 KOG1644 U2-associated snRNP A' 95.7 0.01 2.3E-07 57.5 3.8 80 462-544 45-126 (233)
51 PF08263 LRRNT_2: Leucine rich 95.6 0.014 3E-07 42.4 3.4 35 412-451 2-43 (43)
52 KOG0531 Protein phosphatase 1, 95.4 0.0049 1.1E-07 68.1 0.5 100 461-567 74-173 (414)
53 KOG2739 Leucine-rich acidic nu 95.3 0.015 3.2E-07 58.6 3.6 80 461-544 45-129 (260)
54 KOG3207 Beta-tubulin folding c 95.0 0.0093 2E-07 63.9 1.1 107 460-567 198-312 (505)
55 KOG2982 Uncharacterized conser 94.6 0.0066 1.4E-07 62.0 -1.0 71 444-517 85-156 (418)
56 KOG1644 U2-associated snRNP A' 94.1 0.068 1.5E-06 52.0 4.5 81 483-567 42-124 (233)
57 KOG2739 Leucine-rich acidic nu 93.6 0.054 1.2E-06 54.7 3.1 89 475-567 35-127 (260)
58 PF00560 LRR_1: Leucine Rich R 93.1 0.032 6.9E-07 34.2 0.3 18 485-503 2-19 (22)
59 PF00560 LRR_1: Leucine Rich R 93.0 0.025 5.5E-07 34.7 -0.2 18 509-527 2-19 (22)
60 KOG0473 Leucine-rich repeat pr 92.6 0.0063 1.4E-07 60.1 -5.1 82 460-544 43-124 (326)
61 KOG2982 Uncharacterized conser 91.8 0.049 1.1E-06 55.9 0.1 85 460-544 72-159 (418)
62 PRK15386 type III secretion pr 89.9 0.55 1.2E-05 51.2 5.8 13 532-544 157-169 (426)
63 KOG2123 Uncharacterized conser 89.4 0.027 5.9E-07 57.2 -4.2 75 461-537 43-123 (388)
64 PF01102 Glycophorin_A: Glycop 88.6 0.17 3.7E-06 45.4 0.7 34 583-616 62-95 (122)
65 PRK15386 type III secretion pr 88.5 1.3 2.8E-05 48.4 7.5 31 461-493 74-104 (426)
66 KOG1909 Ran GTPase-activating 87.4 0.58 1.3E-05 49.3 3.8 105 460-567 93-224 (382)
67 KOG3665 ZYG-1-like serine/thre 85.9 0.44 9.6E-06 55.9 2.2 57 461-519 175-232 (699)
68 PF13504 LRR_7: Leucine rich r 85.3 0.56 1.2E-05 26.8 1.4 13 508-520 2-14 (17)
69 KOG0473 Leucine-rich repeat pr 85.2 0.021 4.6E-07 56.5 -7.5 87 478-568 37-123 (326)
70 KOG1909 Ran GTPase-activating 83.5 0.19 4.2E-06 52.7 -1.9 108 460-568 186-310 (382)
71 KOG3665 ZYG-1-like serine/thre 83.3 0.52 1.1E-05 55.3 1.3 104 460-566 149-260 (699)
72 PF08693 SKG6: Transmembrane a 83.3 0.75 1.6E-05 32.6 1.6 11 586-596 11-21 (40)
73 COG5238 RNA1 Ran GTPase-activa 82.7 1.7 3.6E-05 44.5 4.4 105 460-568 93-226 (388)
74 PF13306 LRR_5: Leucine rich r 82.2 1.9 4.2E-05 38.4 4.4 99 461-565 14-112 (129)
75 smart00370 LRR Leucine-rich re 81.1 1.4 3.1E-05 27.8 2.2 19 531-550 2-20 (26)
76 smart00369 LRR_TYP Leucine-ric 81.1 1.4 3.1E-05 27.8 2.2 19 531-550 2-20 (26)
77 KOG2123 Uncharacterized conser 80.9 0.19 4.1E-06 51.3 -3.0 80 480-562 38-123 (388)
78 smart00370 LRR Leucine-rich re 79.0 1.7 3.6E-05 27.5 2.0 19 506-525 1-19 (26)
79 smart00369 LRR_TYP Leucine-ric 79.0 1.7 3.6E-05 27.5 2.0 19 506-525 1-19 (26)
80 COG5238 RNA1 Ran GTPase-activa 79.0 0.88 1.9E-05 46.4 1.1 40 480-519 89-132 (388)
81 KOG3593 Predicted receptor-lik 78.9 1.5 3.1E-05 44.8 2.5 88 67-161 62-157 (355)
82 PF05454 DAG1: Dystroglycan (D 76.9 0.79 1.7E-05 47.6 0.0 9 653-661 213-221 (290)
83 PF02439 Adeno_E3_CR2: Adenovi 76.8 1.6 3.4E-05 30.5 1.4 19 588-606 6-24 (38)
84 PF04478 Mid2: Mid2 like cell 75.3 1 2.2E-05 41.8 0.3 14 584-597 48-61 (154)
85 PF02009 Rifin_STEVOR: Rifin/s 75.1 1.5 3.2E-05 45.9 1.4 22 596-617 267-288 (299)
86 PF13306 LRR_5: Leucine rich r 71.7 6.3 0.00014 35.0 4.6 85 478-566 7-91 (129)
87 PF15102 TMEM154: TMEM154 prot 65.6 1.8 3.9E-05 39.9 -0.3 7 587-593 58-64 (146)
88 PTZ00382 Variant-specific surf 65.3 3.8 8.3E-05 35.3 1.7 18 582-599 63-80 (96)
89 KOG2120 SCF ubiquitin ligase, 62.8 0.6 1.3E-05 48.2 -4.3 107 460-567 235-349 (419)
90 smart00364 LRR_BAC Leucine-ric 61.9 5.2 0.00011 25.7 1.3 17 532-549 3-19 (26)
91 PTZ00046 rifin; Provisional 60.6 7.7 0.00017 41.4 3.2 22 597-618 327-348 (358)
92 KOG2120 SCF ubiquitin ligase, 60.0 0.61 1.3E-05 48.1 -4.8 84 461-544 187-273 (419)
93 TIGR01477 RIFIN variant surfac 59.7 8.3 0.00018 41.0 3.2 21 598-618 323-343 (353)
94 TIGR00864 PCC polycystin catio 58.7 6.7 0.00015 51.9 2.8 33 513-545 1-33 (2740)
95 PF13516 LRR_6: Leucine Rich r 53.7 3.2 6.9E-05 25.6 -0.6 14 531-544 2-15 (24)
96 smart00365 LRR_SD22 Leucine-ri 50.4 13 0.00028 23.8 1.8 14 507-520 2-15 (26)
97 PF08374 Protocadherin: Protoc 50.2 16 0.00034 36.0 3.2 23 585-607 38-60 (221)
98 PF01034 Syndecan: Syndecan do 49.4 5.1 0.00011 31.5 -0.2 11 588-598 12-22 (64)
99 smart00368 LRR_RI Leucine rich 47.6 15 0.00032 23.8 1.8 12 508-519 3-14 (28)
100 TIGR01478 STEVOR variant surfa 46.7 12 0.00025 38.5 1.8 13 602-614 275-287 (295)
101 PTZ00370 STEVOR; Provisional 45.9 13 0.00028 38.3 1.9 11 604-614 273-283 (296)
102 PF01299 Lamp: Lysosome-associ 45.9 9.2 0.0002 40.4 1.0 26 577-603 263-288 (306)
103 PF14575 EphA2_TM: Ephrin type 44.1 3.2 7E-05 34.0 -2.2 14 635-648 58-71 (75)
104 PF08114 PMP1_2: ATPase proteo 43.3 61 0.0013 23.1 4.3 7 607-613 28-34 (43)
105 PHA03265 envelope glycoprotein 42.6 33 0.00071 36.3 4.3 13 38-50 11-23 (402)
106 PF15050 SCIMP: SCIMP protein 41.3 10 0.00022 33.6 0.4 8 602-609 24-31 (133)
107 PF05393 Hum_adeno_E3A: Human 39.9 26 0.00057 29.3 2.5 16 599-614 45-60 (94)
108 PF06365 CD34_antigen: CD34/Po 39.1 31 0.00067 34.0 3.3 30 586-615 101-131 (202)
109 PF14610 DUF4448: Protein of u 36.1 20 0.00044 34.9 1.6 27 586-612 158-184 (189)
110 KOG3864 Uncharacterized conser 35.9 6.9 0.00015 38.5 -1.7 80 460-539 102-184 (221)
111 PF12877 DUF3827: Domain of un 33.7 31 0.00068 39.4 2.7 9 343-351 87-95 (684)
112 KOG1187 Serine/threonine prote 33.2 18 0.00039 39.2 0.8 27 630-656 61-87 (361)
113 KOG3763 mRNA export factor TAP 32.9 22 0.00047 40.1 1.3 64 481-546 216-285 (585)
114 PF14991 MLANA: Protein melan- 30.3 16 0.00035 32.1 -0.1 8 607-614 44-51 (118)
115 KOG1219 Uncharacterized conser 30.2 1E+02 0.0022 40.9 6.3 11 563-573 3919-3929(4289)
116 PRK06764 hypothetical protein; 30.1 49 0.0011 27.5 2.6 17 124-140 74-90 (105)
117 PF05545 FixQ: Cbb3-type cytoc 28.7 62 0.0013 24.0 2.8 8 604-611 26-33 (49)
118 PF15345 TMEM51: Transmembrane 28.2 87 0.0019 31.4 4.5 30 585-614 57-86 (233)
119 PF02480 Herpes_gE: Alphaherpe 27.2 21 0.00045 39.7 0.0 19 589-607 356-374 (439)
120 TIGR03141 cytochro_ccmD heme e 26.5 1.4E+02 0.003 21.8 4.3 8 606-613 25-32 (45)
121 PF03302 VSP: Giardia variant- 23.9 55 0.0012 36.0 2.5 19 581-599 363-381 (397)
122 KOG3763 mRNA export factor TAP 23.5 29 0.00062 39.1 0.2 62 460-523 219-286 (585)
123 PF03944 Endotoxin_C: delta en 21.5 6.3E+02 0.014 23.1 11.3 80 130-215 48-143 (143)
124 PF12768 Rax2: Cortical protei 21.3 1.2E+02 0.0025 31.7 4.2 17 581-597 223-239 (281)
125 PF04689 S1FA: DNA binding pro 21.1 1.1E+02 0.0023 24.2 2.8 26 582-607 10-35 (69)
126 TIGR00864 PCC polycystin catio 21.0 63 0.0014 43.5 2.6 32 489-520 1-32 (2740)
127 PF04995 CcmD: Heme exporter p 20.4 1.9E+02 0.004 21.2 3.9 10 604-613 22-31 (46)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-107 Score=929.41 Aligned_cols=606 Identities=80% Similarity=1.314 Sum_probs=517.8
Q ss_pred eeeccCCCcEEEccCCCCCCcCCCCCceeeccCCccCCccccccCCCCCCCCcceeeeccCCCCCCceEEEeecCCceEE
Q 006035 58 FCFNAAPFAMRISCGARQNIHSPPTNTLWFKDFAYTGGIPANATRPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYN 137 (663)
Q Consensus 58 ~~~~~~~~~~~IdCG~~~~~~~d~~g~~w~~D~~~~~g~~~~~~~~~~~~~~y~t~R~F~~~~g~~~cY~~~~~~~g~yl 137 (663)
..+++++++++||||+++++++|.+||+|++|..+++|.......+....++|+|+|+||..+|+++||+||++++|+|+
T Consensus 17 ~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~~~~~~~~~~~~~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g~yl 96 (623)
T PLN03150 17 SLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAYTGGIPANATRPSFIAPPLKTLRYFPLSDGPENCYNINRVPKGHYS 96 (623)
T ss_pred ccccCCCccEEEeCCCCCCcccCCCCCEEcCCcccccCccccccCcccccchhhccccCCcccccccceEeeecCCCcEE
Confidence 34566778999999999876456789999999877765544444444556789999999976788999999999999999
Q ss_pred EEEEEeCcCCCCCCCCCcEEEEECCeEEEEeecCCCCCCCceEEEEEEEeeCCeEEEEEEeCCCCCceEEEEEEEEcCCc
Q 006035 138 VRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHGDPAILSLEILQVDDK 217 (663)
Q Consensus 138 vRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~~~~E~i~~~~~~~l~vcf~~~~~~~pfIsaIEl~~l~~~ 217 (663)
||+||+||+||+.++.|.|||++|++.|.+|+.+|+.....++||++++++++.++|||+|++.++||||+|||||+|+.
T Consensus 97 VRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~~l~~~ 176 (623)
T PLN03150 97 VRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSSHDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQVDDK 176 (623)
T ss_pred EEEEeecCCcCCCCCCCceEEEECcEEEEEEecCcccCCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEEEcCcc
Confidence 99999999999999999999999999999999988776778999999999999999999999999999999999999999
Q ss_pred ccccCCCccccceEEEEEeeccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCccccccccceecCCCCCCCChHHHHh
Q 006035 218 AYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQ 297 (663)
Q Consensus 218 ~y~~~~~~~~~~~l~~~~RiN~Gg~~~~~~~~~~~D~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~ 297 (663)
+|..+.+...+.+|+++||+||||....+.+||+||+|++||+|.+|..+....+..+++...|+++.+.++.+|+.|||
T Consensus 177 ~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~Vyq 256 (623)
T PLN03150 177 AYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQ 256 (623)
T ss_pred cccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhh
Confidence 99754322346789999999999987777799999999999999998765444456667777787665667789999999
Q ss_pred hccccCCCCCceEEEEecCCCCcEEEEEEEeeccCCCCCcceEEEEEEECCeecccCCccccccCCceEEEEEEEEEeec
Q 006035 298 TALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVN 377 (663)
Q Consensus 298 TAr~~~~~~~nlt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~v~~~ 377 (663)
|||++.+...+++|.|++++++.|+|||||||++......++|+|||||||+.+.+++|+...+|..+.++++++.+.++
T Consensus 257 TA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~ 336 (623)
T PLN03150 257 SALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVS 336 (623)
T ss_pred hhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeec
Confidence 99998766678999999999999999999999975455668999999999999999999998888777889999988887
Q ss_pred CeeEEEEEccCCCCHHHHHHHhhhhhhhhcccCchHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCc
Q 006035 378 GRTLTVTLHPKGGSHAIINAIEVFEIIAVESKTLPEEVRALQVLKNSLDLPHRFGWNGDPCVPQQHPWSGADCQFDRTSH 457 (663)
Q Consensus 378 ~~~l~i~~~p~~~s~piLNaiEi~~~~~~~~~~~~~d~~aL~~~k~~~~~~~~~~W~~~pC~p~~~~w~gv~C~~~~~~~ 457 (663)
++.++|+|+|..+++|+||||||+++...+..+.+.|+.+|+.+|..+.++...+|+++||.|..+.|.|+.|..+....
T Consensus 337 ~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~~~w~Gv~C~~~~~~~ 416 (623)
T PLN03150 337 GRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQHPWSGADCQFDSTKG 416 (623)
T ss_pred CCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcccccccceeeccCCCC
Confidence 88899999999888899999999999887778899999999999998876644589999999888899999997544333
Q ss_pred cceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEe
Q 006035 458 KWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 537 (663)
Q Consensus 458 ~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ 537 (663)
..+++.|+|++|+|.|.+|..++.|++|+.|+|++|+|.|.+|..++.|++|+.|||++|+|+|.+|+.++++++|+.|+
T Consensus 417 ~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 417 KWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred ceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCccCCchhhhccCCCCEEeccCCCCCCCCCCCCCCCCCCCCceEEEEchhHHHHHHHHHHHHHHHHHHHhhHHH
Q 006035 538 LNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSTSAKIGIGFGVLGLIFLLIICSMVWWKRRQNILR 617 (663)
Q Consensus 538 Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~p~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~rr~~~~~ 617 (663)
|++|+|+|.+|..+.....++..+++.+|+.+|+.|....|..+.....++++++++++++++++++.+++++||++..+
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~r~~~~~ 576 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSVGAKIGIAFGVSVAFLFLVICAMCWWKRRQNILR 576 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcccCCCceEEEEEhHHHHHHHHHHHHHhhheeehhhhcc
Confidence 99999999999998876567788999999999999888889766666666776666665554445555555555554443
Q ss_pred HHhhhccCCccccccccchhhhhhhcCCC-CCCCccccCCCCCCCCC
Q 006035 618 AQQIAARGAPYAKARTHLSHDIQLARHYN-HHGNARTAAENGPSLLS 663 (663)
Q Consensus 618 ~~~~~~~~~~~~~~r~~~~~eiq~atnnf-~~~~~~~~~~~~~~~~~ 663 (663)
.+....+..++.+.|....+++|+|+..+ +++++|+++|+||++++
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (623)
T PLN03150 577 AQRIAAREAPYAKARTHFSRDVQMTRHHRQNHGSARTAAENGPSLLS 623 (623)
T ss_pred hhhhhcccCcchhcccceeeeccchhhhccccccccccccCCCcCCC
Confidence 33212334555666667788999999864 67779999999999986
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=2.2e-63 Score=529.93 Aligned_cols=323 Identities=30% Similarity=0.488 Sum_probs=256.9
Q ss_pred EccCCCCCC--cC-CCCCceeeccCCcc-CCcccccc-----CCCCCCCCcceeeeccCCCCCCceEEEeec--CCceEE
Q 006035 69 ISCGARQNI--HS-PPTNTLWFKDFAYT-GGIPANAT-----RPSFITPPLKTLRYFPLSEGPENCYIINRV--PKGHYN 137 (663)
Q Consensus 69 IdCG~~~~~--~~-d~~g~~w~~D~~~~-~g~~~~~~-----~~~~~~~~y~t~R~F~~~~g~~~cY~~~~~--~~g~yl 137 (663)
||||++.+. ++ +.+||+|++|..|+ +|.+..+. ......++|+|||+|| +|.|+||+||+. +++|||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence 799998763 33 36799999999887 45544441 1234568899999999 477899999987 456999
Q ss_pred EEEEEeCcCCCCCC-----CCCcEEEEECCeEEEEeecCCCCCCCceEEEEEEEee-CCeEEEEEEeCCCCC-ceEEEEE
Q 006035 138 VRIFFGLVTLTSFD-----HEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLR-DGTVSICFHSTGHGD-PAILSLE 210 (663)
Q Consensus 138 vRl~F~~~~y~~~~-----~~~~Fdv~~~~~~~~tv~~~~~~~~~~~~~E~i~~~~-~~~l~vcf~~~~~~~-pfIsaIE 210 (663)
|||||+|||||+.+ +++.|||++|++.|.+|...- ....+++||+++++. ++.|+|||+|++.|+ |||||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~-~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsaiE 157 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN-SPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISAIE 157 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEEecC-CCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeEEE
Confidence 99999999999874 256799999999999998533 334679999998887 799999999999887 9999999
Q ss_pred EEEcCCcccccCCCccccceEEEEEeeccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcccccccccee-cCCCCCC
Q 006035 211 ILQVDDKAYYFGQGWGEGLILRTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIK-QASKAPN 289 (663)
Q Consensus 211 l~~l~~~~y~~~~~~~~~~~l~~~~RiN~Gg~~~~~~~~~~~D~~~~DR~W~~~~~~~~~~~~~~~t~~~i~-~~~~~~~ 289 (663)
|||||+++|+.... ..+.+|++++|+||||... .+||++|++ ||+|.++. ....|..+++...|+ ...++++
T Consensus 158 l~~lp~~ly~~~~~-~~s~~L~~~~R~n~G~~~~--~iryp~D~~--dR~W~~~~--~~~~~~~ist~~~i~~~~~~~~~ 230 (347)
T PF12819_consen 158 LRPLPDSLYPDTDA-NSSQALETVYRLNVGGSSS--FIRYPDDTY--DRIWQPYS--SSPGWSNISTTSNININSSNNPY 230 (347)
T ss_pred EEECCccceecccc-CCCceeEEEEeecCCCccc--ccCCCCCcc--eeeccccc--cCccccccccceeeecccCCccC
Confidence 99999999943211 3567899999999998753 289999998 99999763 135577777766676 3445677
Q ss_pred CChHHHHhhccccCCCC--CceEEEEecCCCCcEEEEEEEeeccCCCCCcceEEEEEEECCeecccCCccccccCCceEE
Q 006035 290 FYPEALYQTALVSTDSQ--PDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTA 367 (663)
Q Consensus 290 ~~P~~Vy~TAr~~~~~~--~nlt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~ 367 (663)
.+|.+|||||+++.+.+ .+++|.+ ++++..|+||||||||+......++|+|+|||||+.+.+++++.. .+....+
T Consensus 231 ~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~-~~~~~~~ 308 (347)
T PF12819_consen 231 DAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPY-LGADTVP 308 (347)
T ss_pred cChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCccc-ccCcceE
Confidence 89999999999987664 6899998 999999999999999987556667999999999999887554422 2333445
Q ss_pred EEEEEEEeecC-eeEEEEEccCCCC--HHHHHHHhhhhh
Q 006035 368 LVLNTTVAVNG-RTLTVTLHPKGGS--HAIINAIEVFEI 403 (663)
Q Consensus 368 ~~~~~~v~~~~-~~l~i~~~p~~~s--~piLNaiEi~~~ 403 (663)
++.++.+.+.+ +.++|+++|+.++ +|+|||+|||++
T Consensus 309 ~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 309 YYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred eecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 66777766654 4789999998765 799999999974
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.83 E-value=1.9e-19 Score=206.80 Aligned_cols=88 Identities=32% Similarity=0.582 Sum_probs=82.5
Q ss_pred CCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEecc
Q 006035 485 LQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFT 564 (663)
Q Consensus 485 L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~ 564 (663)
++.|+|++|.++|.+|..++.|++|+.|+|++|+|+|.+|..++.+++|+.|+|++|+|+|.+|+.+.. +.+|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEECc
Confidence 778999999999999999999999999999999999999999999999999999999999999999887 7899999999
Q ss_pred CCCCCCCCC
Q 006035 565 DNAGLCGIP 573 (663)
Q Consensus 565 ~N~~lc~~p 573 (663)
+|...+..|
T Consensus 499 ~N~l~g~iP 507 (623)
T PLN03150 499 GNSLSGRVP 507 (623)
T ss_pred CCcccccCC
Confidence 998766544
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.78 E-value=8.8e-20 Score=175.86 Aligned_cols=142 Identities=27% Similarity=0.405 Sum_probs=84.6
Q ss_pred EEeeccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcccccc---c-cceecCCCCCCCChHHHHhhccccCCCCCce
Q 006035 234 ATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRST---E-SSIKQASKAPNFYPEALYQTALVSTDSQPDL 309 (663)
Q Consensus 234 ~~RiN~Gg~~~~~~~~~~~D~~~~DR~W~~~~~~~~~~~~~~~t---~-~~i~~~~~~~~~~P~~Vy~TAr~~~~~~~nl 309 (663)
++||||||+.. .+.. +..|.+|..+....+..... . .............+..+|||+|++.. ++
T Consensus 2 ~~~IN~Gg~~~---~~~~------g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~---~f 69 (174)
T PF11721_consen 2 VLRINAGGPAY---TDSS------GIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS---SF 69 (174)
T ss_dssp EEEEEETSSSE---EETT------TEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS---SE
T ss_pred EEEEECCCCcc---cCCC------CCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC---ce
Confidence 68999999753 2333 56666665432222210000 0 00011111223346689999999754 39
Q ss_pred EEEEecCCCCcEEEEEEEeeccCCC----CCcceEEEEEEECCeecccCCccccccCCceEEEEEEE-EEeecCeeEEEE
Q 006035 310 QYTMDVDPNRNYSIWLHFAEIDNTI----TGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNT-TVAVNGRTLTVT 384 (663)
Q Consensus 310 t~~~~v~~~~~y~vrLhFaEi~~~~----~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~-~v~~~~~~l~i~ 384 (663)
+|.+|+.++|.|.|+|||||+.... ...++|+|||+|||++++++|||++.+|+...+.++.+ .+.+++|.|.|.
T Consensus 70 ~Y~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~ 149 (174)
T PF11721_consen 70 SYDIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQ 149 (174)
T ss_dssp EEEEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETT
T ss_pred EEEEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEE
Confidence 9999977889999999999997643 33789999999999999999999999998665666555 778888999999
Q ss_pred Ecc
Q 006035 385 LHP 387 (663)
Q Consensus 385 ~~p 387 (663)
|..
T Consensus 150 f~~ 152 (174)
T PF11721_consen 150 FVW 152 (174)
T ss_dssp EEE
T ss_pred EEe
Confidence 983
No 5
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.47 E-value=1.8e-13 Score=131.94 Aligned_cols=134 Identities=28% Similarity=0.425 Sum_probs=83.7
Q ss_pred EEEccCCCCCCcCCCCCceeeccCCccCCcccc----------ccCCC-----CCCCCcceeeeccCCCCCCceEEEeec
Q 006035 67 MRISCGARQNIHSPPTNTLWFKDFAYTGGIPAN----------ATRPS-----FITPPLKTLRYFPLSEGPENCYIINRV 131 (663)
Q Consensus 67 ~~IdCG~~~~~~~d~~g~~w~~D~~~~~g~~~~----------~~~~~-----~~~~~y~t~R~F~~~~g~~~cY~~~~~ 131 (663)
++||||++.- +|..|..|.+|..+.+|...- ..... ....+|+|.|+-+. .+.|.||+.
T Consensus 3 ~~IN~Gg~~~--~~~~g~~w~~D~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~~ 76 (174)
T PF11721_consen 3 LRINAGGPAY--TDSSGIVWEADQYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPVV 76 (174)
T ss_dssp EEEEETSSSE--EETTTEEE-SSSSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE--
T ss_pred EEEECCCCcc--cCCCCCEEcCCCCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEecC
Confidence 7899999763 567899999999887654410 00000 11257999999763 599999988
Q ss_pred CCceEEEEEEEeCcCCCC----C-CCCCcEEEEECCeEEEEeecCCCC---C---CCceEEEE-EEEeeCCeEEEEEEe-
Q 006035 132 PKGHYNVRIFFGLVTLTS----F-DHEPLFDISVEGTQIYSLKSGWSD---H---DDRAFAEA-LVFLRDGTVSICFHS- 198 (663)
Q Consensus 132 ~~g~ylvRl~F~~~~y~~----~-~~~~~Fdv~~~~~~~~tv~~~~~~---~---~~~~~~E~-i~~~~~~~l~vcf~~- 198 (663)
++|.|.|||||.+..+.. . ...+.|||+++| .+|+.+|+. . ..++.+++ -+.++++.|.|+|..
T Consensus 77 ~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g---~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~ 153 (174)
T PF11721_consen 77 PNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNG---ETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWA 153 (174)
T ss_dssp S-EEEEEEEEEE-SSS--------SSSS-EEEEETT---EEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE
T ss_pred CCcEEEEEEEeccccccccccccCCCceEEEEEecc---eEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEec
Confidence 889999999998875544 1 346689999999 566666653 2 22577777 456799999999985
Q ss_pred ----------CCCCCceEEEE
Q 006035 199 ----------TGHGDPAILSL 209 (663)
Q Consensus 199 ----------~~~~~pfIsaI 209 (663)
...+.|.||||
T Consensus 154 ~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 154 GKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp --SEEEEEEESSSSSSSEEEE
T ss_pred CCCcEEeeccccCCCcEEeeC
Confidence 44667888887
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.45 E-value=2.8e-13 Score=164.88 Aligned_cols=110 Identities=32% Similarity=0.529 Sum_probs=81.8
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+++.+|..+.++++|+.|+|++|++.|.+|..+.++++|+.|+|++|.++|.+|..+.++++|+.|+|+
T Consensus 476 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 476 RLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred cceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 36677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC 570 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc 570 (663)
+|+++|.+|..+.. +..|+.+++++|+..+
T Consensus 556 ~N~l~~~~p~~l~~-l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 556 QNQLSGEIPKNLGN-VESLVQVNISHNHLHG 585 (968)
T ss_pred CCcccccCChhHhc-CcccCEEeccCCccee
Confidence 77777777776665 5566667666665443
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.42 E-value=7.3e-13 Score=161.32 Aligned_cols=149 Identities=32% Similarity=0.544 Sum_probs=101.1
Q ss_pred CchHHHHHHHHhhhcCCCCC--CCCCCC-CCCCCCCCCCCCcccccCCCCccceEeEEEccCCCCcccCCccccCCCcCC
Q 006035 410 TLPEEVRALQVLKNSLDLPH--RFGWNG-DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQ 486 (663)
Q Consensus 410 ~~~~d~~aL~~~k~~~~~~~--~~~W~~-~pC~p~~~~w~gv~C~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~ 486 (663)
..+.|..+|+++|+++.++. ..+|+. +.|+ .|.|++|... .+|+.|+|++|+++|.++..|..|++|+
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c----~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNSSADVC----LWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYIQ 96 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCCC----cCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCCC
Confidence 46689999999999987653 247963 3443 6999999742 2478888888888888888888888888
Q ss_pred cccCcCccccccCCCCCC-CCCCCcEEeCCCCCCCC----------------------CCcccccCCCCCCEEeccCCcC
Q 006035 487 SINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNG----------------------SIPESLGQLTALRRLNLNGNTL 543 (663)
Q Consensus 487 ~L~Ls~N~l~g~ip~~~~-~L~~L~~LdLs~N~l~g----------------------~iP~~l~~l~~L~~L~Ls~N~l 543 (663)
.|+|++|+++|.+|..+. .+++|++|+|++|+++| .+|..++++++|++|+|++|.+
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 888888888877776544 56666666666555554 4444555555566666666665
Q ss_pred CccCCchhhhccCCCCEEeccCCCC
Q 006035 544 SGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 544 sg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
.+.+|..+.. +.+|+.|++++|..
T Consensus 177 ~~~~p~~~~~-l~~L~~L~L~~n~l 200 (968)
T PLN00113 177 VGKIPNSLTN-LTSLEFLTLASNQL 200 (968)
T ss_pred cccCChhhhh-CcCCCeeeccCCCC
Confidence 5555555544 45566666666543
No 8
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.83 E-value=1e-08 Score=109.92 Aligned_cols=158 Identities=23% Similarity=0.297 Sum_probs=101.8
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCccccccccceecCCCCCCCChHHHHhhccccCCCCCceEEEEecC
Q 006035 237 LSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQYTMDVD 316 (663)
Q Consensus 237 iN~Gg~~~~~~~~~~~D~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~TAr~~~~~~~nlt~~~~v~ 316 (663)
||||++.... .|.|+.- +|.|.+|..+...+ .+..|....+.....+...|+|||....+. .-.|+|++.
T Consensus 1 IdCG~~~~~s--~y~D~~t--g~~~~~D~~~~~~g-----~~~~i~~~~~~~~~~~~~~y~taR~F~~g~-r~cY~l~~~ 70 (347)
T PF12819_consen 1 IDCGSSSNSS--SYVDDST--GRTWVSDDDFIDTG-----KSGNISSQPDSSSSDSSPPYQTARIFPEGS-RNCYTLPVT 70 (347)
T ss_pred CcCCCCCCCc--ccccCCC--CcEEeCCCCcccCC-----CccccccccCCcCCccccccceEEEcCCCC-ccEEEeecc
Confidence 6899875321 3555554 89999887532211 122231111111124556899999977432 489999987
Q ss_pred --CCCcEEEEEEEeeccCCCCC----cceEEEEEEECCeecccCCccccccCCceEEEEEEEEEeec-CeeEEEEEccCC
Q 006035 317 --PNRNYSIWLHFAEIDNTITG----VGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVN-GRTLTVTLHPKG 389 (663)
Q Consensus 317 --~~~~y~vrLhFaEi~~~~~~----~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~v~~~-~~~l~i~~~p~~ 389 (663)
.+++|+|||||.-..+.... ...-.|+++++...+. .+++.. ....++++++.+.+. ++.|.|.|.|..
T Consensus 71 ~~~~~~yliRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~-tV~~~~---~~~~~~~~E~ii~v~~~~~l~vclv~~~ 146 (347)
T PF12819_consen 71 PPGGGKYLIRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWS-TVNLSN---SPSSPVVKEFIINVTWSDTLSVCLVPTG 146 (347)
T ss_pred CCCCceEEEEEEeccccccccccccccCCcceEEEECCceeE-EEEecC---CCcceEEEEEEEEEcCCCcEEEEEEeCC
Confidence 45699999999977542111 1134699999987652 122211 112468889888888 688999999998
Q ss_pred CC-HHHHHHHhhhhhhhhcc
Q 006035 390 GS-HAIINAIEVFEIIAVES 408 (663)
Q Consensus 390 ~s-~piLNaiEi~~~~~~~~ 408 (663)
.. .|+|||||+..+.+...
T Consensus 147 ~g~~pFIsaiEl~~lp~~ly 166 (347)
T PF12819_consen 147 SGTFPFISAIELRPLPDSLY 166 (347)
T ss_pred CCCCCceeEEEEEECCccce
Confidence 55 49999999999866433
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.81 E-value=2.9e-10 Score=105.54 Aligned_cols=91 Identities=31% Similarity=0.550 Sum_probs=76.1
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|-|++|.|+ .+|+.+..|.+|+.|++++|++. .+|.+++.|++|+.|+++.|+|. .+|..++.++.|++|||.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 4778889999988 56778899999999999999998 78889999999999999999988 888889999999999998
Q ss_pred CCcCC-ccCCchhhh
Q 006035 540 GNTLS-GRVPAALGG 553 (663)
Q Consensus 540 ~N~ls-g~iP~~~~~ 553 (663)
+|+++ ..+|..|+.
T Consensus 111 ynnl~e~~lpgnff~ 125 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFY 125 (264)
T ss_pred ccccccccCCcchhH
Confidence 88875 345655443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.59 E-value=6.4e-09 Score=112.60 Aligned_cols=106 Identities=28% Similarity=0.383 Sum_probs=70.1
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcc---cccCCCCCCEEe
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE---SLGQLTALRRLN 537 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~---~l~~l~~L~~L~ 537 (663)
+..|+|++|+|+..-+..|..|.+|+.|+|++|+++..-...|..+++|+.|||++|.+++.|-+ .+.+|++|+.|.
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 66677777777776666777777777777777777655555666677777777777777665554 245566677777
Q ss_pred ccCCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 538 LNGNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 538 Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|.+|++. .||..-+..+.+|++|++.+|+
T Consensus 399 l~gNqlk-~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 399 LTGNQLK-SIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ecCceee-ecchhhhccCcccceecCCCCc
Confidence 7777776 5555444446666677766664
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.55 E-value=6.7e-09 Score=96.65 Aligned_cols=104 Identities=34% Similarity=0.571 Sum_probs=59.0
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCC-------------------
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG------------------- 521 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g------------------- 521 (663)
++.|++.+|+|. .+|..++.|+.|+.|+++-|++. .+|..|+.++.|+.|||..|+|..
T Consensus 58 levln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~ 135 (264)
T KOG0617|consen 58 LEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG 135 (264)
T ss_pred hhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhc
Confidence 444555555554 34555555555555555555555 455555555555555555555431
Q ss_pred -----CCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 522 -----SIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 522 -----~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
.+|..++++++|+.|.+..|.+- ++|..++. +..|+.|.+.+|..
T Consensus 136 dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~-lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 136 DNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD-LTRLRELHIQGNRL 185 (264)
T ss_pred CCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHH-HHHHHHHhccccee
Confidence 45555666666666666666665 56666655 45566666666653
No 12
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.44 E-value=8.4e-08 Score=75.69 Aligned_cols=60 Identities=37% Similarity=0.587 Sum_probs=35.5
Q ss_pred cCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcC
Q 006035 484 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTL 543 (663)
Q Consensus 484 ~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 543 (663)
+|+.|+|++|+++...+..|..+++|+.|+|++|+++...|..+.++++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666644445556666666666666666644445566666666666666653
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.37 E-value=1.3e-07 Score=107.67 Aligned_cols=105 Identities=30% Similarity=0.465 Sum_probs=91.1
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
+++.|+|++|.|.......+.+|..|+.|+||+|.|+ .+|..+.+++.|+.|...+|++. ..| ++.+++.|+.+||+
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecc
Confidence 4889999999998766678999999999999999999 88999999999999999999998 788 89999999999999
Q ss_pred CCcCCc-cCCchhhhccCCCCEEeccCCCCC
Q 006035 540 GNTLSG-RVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 540 ~N~lsg-~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
.|+|+- .+|.... .++|+.||++||.++
T Consensus 461 ~N~L~~~~l~~~~p--~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 461 CNNLSEVTLPEALP--SPNLKYLDLSGNTRL 489 (1081)
T ss_pred cchhhhhhhhhhCC--CcccceeeccCCccc
Confidence 999963 4444332 168999999999843
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.36 E-value=3e-07 Score=88.39 Aligned_cols=103 Identities=27% Similarity=0.377 Sum_probs=38.6
Q ss_pred eEeEEEccCCCCcccCCcccc-CCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccc-cCCCCCCEEe
Q 006035 460 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLN 537 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l-~~l~~L~~L~ 537 (663)
.++.|+|.+|.|+-. ..++ .|.+|+.|+|++|.++ .++ .+..|+.|+.|+|++|+++ .+.+.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 467899999999853 3455 5789999999999998 454 5788999999999999999 555444 4689999999
Q ss_pred ccCCcCCccCC-chhhhccCCCCEEeccCCCC
Q 006035 538 LNGNTLSGRVP-AALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 538 Ls~N~lsg~iP-~~~~~~l~~L~~l~l~~N~~ 568 (663)
|++|++..--- ..+. .+++|+.|++.+||.
T Consensus 95 L~~N~I~~l~~l~~L~-~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 95 LSNNKISDLNELEPLS-SLPKLRVLSLEGNPV 125 (175)
T ss_dssp -TTS---SCCCCGGGG-G-TT--EEE-TT-GG
T ss_pred CcCCcCCChHHhHHHH-cCCCcceeeccCCcc
Confidence 99999973211 2233 368899999999983
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.35 E-value=8.4e-08 Score=104.57 Aligned_cols=104 Identities=29% Similarity=0.394 Sum_probs=64.8
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCC--------------------
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN-------------------- 520 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~-------------------- 520 (663)
...|+||+|+|.....+-|.+|+.|-+||||+|+|. .+|+.+..|..|+.|+||+|.|.
T Consensus 128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~ 206 (1255)
T KOG0444|consen 128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSN 206 (1255)
T ss_pred cEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhccc
Confidence 345677777766544445666777777777777776 55666666666666666666432
Q ss_pred -----CCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 521 -----GSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 521 -----g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
..+|.++..+.+|..+|||.|.|. .+|+.+.. +.+|+.|++++|.
T Consensus 207 TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 207 TQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNK 256 (1255)
T ss_pred ccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCc
Confidence 134555566666666677777766 56666655 4556666666664
No 16
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.32 E-value=1.2e-07 Score=98.85 Aligned_cols=105 Identities=30% Similarity=0.411 Sum_probs=88.3
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|-+. .+|.+++.+..|+.|||+.|+|. .+|..+..+..|+.+-.++|++...-|+.+.++.+|..|||.+
T Consensus 437 Lt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 437 LTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred ceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 666888877665 67888888888888999988887 7787777777788887888888755556699999999999999
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
|.+. .||+.+++ +.++++|.+.||++-
T Consensus 515 Ndlq-~IPp~Lgn-mtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 NDLQ-QIPPILGN-MTNLRHLELDGNPFR 541 (565)
T ss_pred Cchh-hCChhhcc-ccceeEEEecCCccC
Confidence 9998 89999988 789999999999975
No 17
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.29 E-value=4.4e-07 Score=98.70 Aligned_cols=107 Identities=22% Similarity=0.275 Sum_probs=90.0
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
+++.|+|.+|-|+..-..++..++.|+.||||.|.++..--..|..-.+++.|+|++|+++..--+.|.++.+|..|.|+
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 58889999999998888899999999999999999984444567777889999999999987667788888899999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
.|+++ .+|...+..++.|+.|++..|.
T Consensus 206 rNrit-tLp~r~Fk~L~~L~~LdLnrN~ 232 (873)
T KOG4194|consen 206 RNRIT-TLPQRSFKRLPKLESLDLNRNR 232 (873)
T ss_pred cCccc-ccCHHHhhhcchhhhhhccccc
Confidence 99998 7787776667888888877774
No 18
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.29 E-value=3.9e-07 Score=71.83 Aligned_cols=60 Identities=30% Similarity=0.526 Sum_probs=56.0
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCC
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 519 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l 519 (663)
.++.|++++|+|+...+..|.++++|+.|+|++|.++...|..|..+++|+.|+|++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 378899999999988888999999999999999999988888999999999999999975
No 19
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.18 E-value=2.4e-07 Score=101.13 Aligned_cols=110 Identities=28% Similarity=0.482 Sum_probs=95.2
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCcccc-ccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~-g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
+++.|+||+|.|+ .+|..+++|+.|+.|.+.+|+|+ .-||..+++|..|+.+..++|.|. ..|+.+..+..|+.|.|
T Consensus 269 ~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L 346 (1255)
T KOG0444|consen 269 NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKL 346 (1255)
T ss_pred hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcc
Confidence 3666788888887 67889999999999999999886 347889999999999999999998 89999999999999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 573 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~p 573 (663)
+.|+|. .+|+.+- ++..+..|++.+|+.+--+|
T Consensus 347 ~~NrLi-TLPeaIH-lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 347 DHNRLI-TLPEAIH-LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccee-echhhhh-hcCCcceeeccCCcCccCCC
Confidence 999998 8898875 47889999999999887654
No 20
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=98.12 E-value=2.8e-06 Score=84.68 Aligned_cols=107 Identities=20% Similarity=0.277 Sum_probs=81.7
Q ss_pred hHHHHhhccccCCCCCceEEEEecCCCCcEEEEEEEeeccCCCCCcceEEEEEEEC-CeecccCCccccccCCceEE--E
Q 006035 292 PEALYQTALVSTDSQPDLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILIN-GDIAFQGVDVVKMSGDRYTA--L 368 (663)
Q Consensus 292 P~~Vy~TAr~~~~~~~nlt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~in-g~~~~~~~di~~~~~~~~~~--~ 368 (663)
-..+|||+|+.... +.|..|.+..|+|-+.|.|||... +..+..+|||-+| +..+.+++|++...|+..++ .
T Consensus 107 d~ily~ter~neet---Fgyd~pik~dgdyalvlkfaevyF--~~~q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe 181 (355)
T KOG3593|consen 107 DIILYQTERYNEET---FGYDVPIKEDGDYALVLKFAEVYF--KTCQHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDE 181 (355)
T ss_pred hhhhhhhcccchhh---hcccccccCCCceehhhhHHHHHH--HhhhhhheeeeeccceeEEeccchhhhcCCCcccccc
Confidence 34689999997543 788889888999999999999864 5568899999999 99999999999888743222 2
Q ss_pred EEEEE-----------Ee-ecCeeEEEEEccCCCCHHHHHHHhhhhh
Q 006035 369 VLNTT-----------VA-VNGRTLTVTLHPKGGSHAIINAIEVFEI 403 (663)
Q Consensus 369 ~~~~~-----------v~-~~~~~l~i~~~p~~~s~piLNaiEi~~~ 403 (663)
+..+. +. ...|+++|+|.+..-.+|++||..|+..
T Consensus 182 ~i~~~i~~gkls~~gess~~t~gkl~le~~kg~ldnpk~~a~aIl~g 228 (355)
T KOG3593|consen 182 IIPCLIGQGKLSVCGESSISTLGKLNLEFLKGVLDNPKDCARAILVG 228 (355)
T ss_pred eEEEEEcCceEEEEeeeEEeecceEEEEeecccCCChhhhhHHHhhc
Confidence 22111 11 2336788999887766799999988765
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.08 E-value=8.7e-07 Score=92.55 Aligned_cols=94 Identities=26% Similarity=0.317 Sum_probs=63.7
Q ss_pred cccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCC
Q 006035 478 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 557 (663)
Q Consensus 478 ~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~ 557 (663)
.|..|++|+.|+|++|++++.-+..|..+..++.|.|..|++.-.--..+.+++.|+.|+|.+|+++-.-|..|.. +..
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~-~~~ 347 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT-LFS 347 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc-cce
Confidence 4667777777777777777666777777777777777777776433445666777777777777777554544443 556
Q ss_pred CCEEeccCCCCCCCC
Q 006035 558 RASFNFTDNAGLCGI 572 (663)
Q Consensus 558 L~~l~l~~N~~lc~~ 572 (663)
|..+++-.||+.|.+
T Consensus 348 l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 348 LSTLNLLSNPFNCNC 362 (498)
T ss_pred eeeeehccCcccCcc
Confidence 677777777777754
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.90 E-value=1.6e-05 Score=92.74 Aligned_cols=77 Identities=27% Similarity=0.332 Sum_probs=52.1
Q ss_pred cCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEec
Q 006035 484 HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNF 563 (663)
Q Consensus 484 ~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l 563 (663)
+|+.|+|++|+|++ +|.. .+.|+.|+|++|+|+ .+|... .+|+.|+|++|+++ .+|..+.. +..+..+++
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~-L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIH-LSSETTVNL 452 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhh-ccCCCeEEC
Confidence 45666666666663 4432 245677777777776 456432 35677888888887 77887765 678888999
Q ss_pred cCCCCCC
Q 006035 564 TDNAGLC 570 (663)
Q Consensus 564 ~~N~~lc 570 (663)
++|+..+
T Consensus 453 s~N~Ls~ 459 (788)
T PRK15387 453 EGNPLSE 459 (788)
T ss_pred CCCCCCc
Confidence 9998544
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.87 E-value=1.3e-05 Score=77.08 Aligned_cols=85 Identities=33% Similarity=0.497 Sum_probs=29.5
Q ss_pred cccCCCcCCcccCcCccccccCCCCCC-CCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccC
Q 006035 478 GISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL 556 (663)
Q Consensus 478 ~~~~L~~L~~L~Ls~N~l~g~ip~~~~-~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~ 556 (663)
.+.+..+++.|+|++|.++ .|. .++ .+..|+.|||++|.++ .++ .+..++.|+.|+|++|+++ .+++.+...++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp 88 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred ccccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence 3456678999999999998 454 455 5889999999999999 454 4778999999999999999 56665554478
Q ss_pred CCCEEeccCCC
Q 006035 557 HRASFNFTDNA 567 (663)
Q Consensus 557 ~L~~l~l~~N~ 567 (663)
+|+.|++++|.
T Consensus 89 ~L~~L~L~~N~ 99 (175)
T PF14580_consen 89 NLQELYLSNNK 99 (175)
T ss_dssp T--EEE-TTS-
T ss_pred cCCEEECcCCc
Confidence 99999999997
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.85 E-value=2.3e-06 Score=89.52 Aligned_cols=103 Identities=27% Similarity=0.450 Sum_probs=69.8
Q ss_pred ccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCch-h
Q 006035 473 GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAA-L 551 (663)
Q Consensus 473 g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~-~ 551 (663)
+.+|..++.+++|..|+|++|-+. .+|.+++.+..||.||||+|+|. .+|..+-.+..|+.+-.++|++. .+++. +
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~l 501 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSGL 501 (565)
T ss_pred ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHHh
Confidence 345566667777777777777776 66777777777777777777776 66766666666666666667766 34433 5
Q ss_pred hhccCCCCEEeccCCCCCCCCCCCCCCC
Q 006035 552 GGRLLHRASFNFTDNAGLCGIPGLRACG 579 (663)
Q Consensus 552 ~~~l~~L~~l~l~~N~~lc~~p~~~~c~ 579 (663)
.+ +.+|.+|++.+|....-+|.+..|.
T Consensus 502 ~n-m~nL~tLDL~nNdlq~IPp~Lgnmt 528 (565)
T KOG0472|consen 502 KN-MRNLTTLDLQNNDLQQIPPILGNMT 528 (565)
T ss_pred hh-hhhcceeccCCCchhhCChhhcccc
Confidence 44 6788999999998666555555554
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.83 E-value=1.1e-06 Score=100.44 Aligned_cols=103 Identities=27% Similarity=0.395 Sum_probs=92.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCC-CCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP-SSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip-~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++.|.|.+|.|+...-+-+.+..+|+.|+|++|+|. .+| ..+.+|..|+.|+||+|+|+ .+|+.+.++..|++|..
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 4778999999999988888999999999999999998 555 56889999999999999999 99999999999999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
.+|++. ..| .+.. ++.|+.+|++.|.
T Consensus 438 hsN~l~-~fP-e~~~-l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQ-LPQLKVLDLSCNN 463 (1081)
T ss_pred cCCcee-ech-hhhh-cCcceEEecccch
Confidence 999998 788 5554 7889999999885
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.79 E-value=5.3e-05 Score=93.99 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=82.5
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|...+.+|..+++|++|+.|+|++|..-+.+|..+ ++++|+.|+|++|.....+|.. ..+|+.|+|+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 47889999998888899999999999999999886556788766 7888888888887655556543 3567888888
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|.++ .+|.++.. +.+|+.|++++++.+...
T Consensus 855 ~n~i~-~iP~si~~-l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 855 RTGIE-EVPWWIEK-FSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred CCCCc-cChHHHhc-CCCCCEEECCCCCCcCcc
Confidence 88887 67777665 677888888776555443
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.77 E-value=3.6e-06 Score=88.03 Aligned_cols=119 Identities=27% Similarity=0.329 Sum_probs=85.7
Q ss_pred CCcccccCCC-----CccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCC-CCC
Q 006035 446 SGADCQFDRT-----SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY-NFF 519 (663)
Q Consensus 446 ~gv~C~~~~~-----~~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~-N~l 519 (663)
.-|+|+..+- +-+...+.|.|..|.|+...|..|+.+.+|+.||||+|+|+-.-|+.|..|.+|..|-+-+ |++
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 3467764321 1223477899999999988888999999999999999999988899999998887765554 888
Q ss_pred CCCCc-ccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCC
Q 006035 520 NGSIP-ESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 566 (663)
Q Consensus 520 ~g~iP-~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N 566 (663)
+ .+| +.|++|.+|+.|.+.-|++....+..+.. +.++..|.+.+|
T Consensus 129 ~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~d-L~~l~lLslyDn 174 (498)
T KOG4237|consen 129 T-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRD-LPSLSLLSLYDN 174 (498)
T ss_pred h-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHH-hhhcchhcccch
Confidence 8 455 67788888888877777777443333333 444444444443
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.74 E-value=5.3e-06 Score=83.85 Aligned_cols=102 Identities=23% Similarity=0.340 Sum_probs=57.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|++++|+|... .++..|.+|+.||||+|.++ .+...-.+|.+.+.|.|+.|.+. .+ ..+.++-+|..||++
T Consensus 308 kir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L-SGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 308 KLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL-SGLRKLYSLVNLDLS 382 (490)
T ss_pred ceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-hhhHhhhhheecccc
Confidence 355566666665432 12555566666666666665 33334445556666666666554 11 234556677778888
Q ss_pred CCcCCccCC--chhhhccCCCCEEeccCCCC
Q 006035 540 GNTLSGRVP--AALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 540 ~N~lsg~iP--~~~~~~l~~L~~l~l~~N~~ 568 (663)
+|++. .+- ..+++ ++.|+++.+.+||.
T Consensus 383 ~N~Ie-~ldeV~~IG~-LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 383 SNQIE-ELDEVNHIGN-LPCLETLRLTGNPL 411 (490)
T ss_pred ccchh-hHHHhccccc-ccHHHHHhhcCCCc
Confidence 88775 211 12333 56777777778773
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.72 E-value=5.1e-05 Score=88.92 Aligned_cols=94 Identities=30% Similarity=0.434 Sum_probs=48.3
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|+|+ .+|..+. ..|+.|+|++|++. .+|..+. .+|+.|+|++|+|+ .+|+.+. ++|+.|+|++
T Consensus 222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD 292 (754)
T ss_pred CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence 444445544444 2333222 24555555555555 4444432 35666666666666 4555443 3566666666
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|+|+ .+|..+. .+|+.|++++|.
T Consensus 293 N~Lt-~LP~~lp---~sL~~L~Ls~N~ 315 (754)
T PRK15370 293 NSIR-TLPAHLP---SGITHLNVQSNS 315 (754)
T ss_pred Cccc-cCcccch---hhHHHHHhcCCc
Confidence 6666 3454332 245555666654
No 30
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.68 E-value=4.7e-06 Score=75.34 Aligned_cols=89 Identities=24% Similarity=0.421 Sum_probs=75.6
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.++|++|.+....+.--...+.++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|.-+..|.+|-.|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 5888999999998544433345568999999999999 88999999999999999999999 778878889999999999
Q ss_pred CCcCCccCCchh
Q 006035 540 GNTLSGRVPAAL 551 (663)
Q Consensus 540 ~N~lsg~iP~~~ 551 (663)
+|.+. +||..+
T Consensus 132 ~na~~-eid~dl 142 (177)
T KOG4579|consen 132 ENARA-EIDVDL 142 (177)
T ss_pred CCccc-cCcHHH
Confidence 99987 777664
No 31
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.67 E-value=9.5e-05 Score=91.79 Aligned_cols=106 Identities=25% Similarity=0.303 Sum_probs=70.6
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|. .++..+..+++|+.|+|+++..-+.+| .++.+++|+.|+|++|.....+|..+.++++|+.|+++
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 3666777777765 356666777777777777765545666 36677777777777776556777777777777777777
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
+|..-..+|..+ .+.+|+.|++++|..+
T Consensus 690 ~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L 717 (1153)
T PLN03210 690 RCENLEILPTGI--NLKSLYRLNLSGCSRL 717 (1153)
T ss_pred CCCCcCccCCcC--CCCCCCEEeCCCCCCc
Confidence 754444666644 2456666666665443
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.65 E-value=1.3e-05 Score=84.75 Aligned_cols=107 Identities=31% Similarity=0.432 Sum_probs=54.2
Q ss_pred EeEEEccCCCCccc----CCccccCCCcCCcccCcCcccccc----CCCCCCCCCCCcEEeCCCCCCCCC----Cccccc
Q 006035 461 IDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESLG 528 (663)
Q Consensus 461 l~~L~Ls~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~l~g~----iP~~l~ 528 (663)
++.|+|++|.+++. ++..+..+++|+.|+|++|.+++. ++..+..++.|+.|+|++|.+++. ++..+.
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~ 218 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence 55666666666532 223444555666666666666532 222334445666666666665532 223344
Q ss_pred CCCCCCEEeccCCcCCccCCchhhhc----cCCCCEEeccCCC
Q 006035 529 QLTALRRLNLNGNTLSGRVPAALGGR----LLHRASFNFTDNA 567 (663)
Q Consensus 529 ~l~~L~~L~Ls~N~lsg~iP~~~~~~----l~~L~~l~l~~N~ 567 (663)
.+++|+.|++++|++++.....+... ...|+.+++++|.
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 55566666666666654222222221 1355566665553
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.64 E-value=1.1e-05 Score=87.99 Aligned_cols=103 Identities=30% Similarity=0.471 Sum_probs=83.6
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|-+++|+++ .+|.+++.+..|..||.+.|.+. .+|..++.|.+|+.|.+..|++. .+|.++..| .|..||++.
T Consensus 145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence 666888888876 67888888888889999999887 77888888888888888888888 777777744 477888888
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
|+++ .||..|-. +..|..|-|.+||..
T Consensus 221 Nkis-~iPv~fr~-m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 221 NKIS-YLPVDFRK-MRHLQVLQLENNPLQ 247 (722)
T ss_pred Ccee-ecchhhhh-hhhheeeeeccCCCC
Confidence 8888 78888766 678888888888854
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.63 E-value=7.2e-05 Score=87.72 Aligned_cols=76 Identities=26% Similarity=0.436 Sum_probs=46.4
Q ss_pred CcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEe
Q 006035 483 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFN 562 (663)
Q Consensus 483 ~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~ 562 (663)
++|+.|++++|.+++ +|..+. ++|+.|+|++|+|+ .+|..+. ++|+.|+|++|+|+ .+|..+.. .|+.|+
T Consensus 325 ~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~---sL~~Ld 394 (754)
T PRK15370 325 PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPA---ALQIMQ 394 (754)
T ss_pred ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHH---HHHHHh
Confidence 456666666666653 454442 56777777777776 4565442 46777777777777 56665432 356666
Q ss_pred ccCCCC
Q 006035 563 FTDNAG 568 (663)
Q Consensus 563 l~~N~~ 568 (663)
+++|..
T Consensus 395 Ls~N~L 400 (754)
T PRK15370 395 ASRNNL 400 (754)
T ss_pred hccCCc
Confidence 777653
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.62 E-value=1.2e-05 Score=84.79 Aligned_cols=107 Identities=30% Similarity=0.436 Sum_probs=51.5
Q ss_pred EeEEEccCCCCcc----cCCccccCC-CcCCcccCcCcccccc----CCCCCCCCCCCcEEeCCCCCCCCC----Ccccc
Q 006035 461 IDGLGLDNQGLRG----FLPNGISKL-RHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESL 527 (663)
Q Consensus 461 l~~L~Ls~n~l~g----~~p~~~~~L-~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~l~g~----iP~~l 527 (663)
++.|++++|.+.+ .+...+..+ ++|+.|+|++|.+++. ++..+..+..|+.|+|++|.+++. ++..+
T Consensus 110 L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l 189 (319)
T cd00116 110 LQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGL 189 (319)
T ss_pred ccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHH
Confidence 5556666655542 222234444 5556666666665532 222344455566666666665532 22233
Q ss_pred cCCCCCCEEeccCCcCCccCCchhhh---ccCCCCEEeccCCC
Q 006035 528 GQLTALRRLNLNGNTLSGRVPAALGG---RLLHRASFNFTDNA 567 (663)
Q Consensus 528 ~~l~~L~~L~Ls~N~lsg~iP~~~~~---~l~~L~~l~l~~N~ 567 (663)
..+++|+.|+|++|.+++.-...+.. .+++|+.|++++|+
T Consensus 190 ~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 190 KANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 34455666666666554322221111 12345666666554
No 36
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.60 E-value=4e-05 Score=89.52 Aligned_cols=85 Identities=31% Similarity=0.383 Sum_probs=71.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|.+ +|.. ..+|+.|+|++|+|++ +|.. +.+|+.|+|++|+|+ .+|..+.++++|+.|+|+
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs 453 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 453 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence 37889999999985 5543 3679999999999994 7754 356889999999999 899999999999999999
Q ss_pred CCcCCccCCchhhh
Q 006035 540 GNTLSGRVPAALGG 553 (663)
Q Consensus 540 ~N~lsg~iP~~~~~ 553 (663)
+|+|+|..|..+..
T Consensus 454 ~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 454 GNPLSERTLQALRE 467 (788)
T ss_pred CCCCCchHHHHHHH
Confidence 99999988877643
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.55 E-value=8.1e-06 Score=82.51 Aligned_cols=100 Identities=22% Similarity=0.336 Sum_probs=79.6
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.+||++|.|+ .+..+..-++.++.|+||.|.+. .+. .+..|++|+.||||+|.|+ .+-..-.++-+.+.|+|++
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 778999999987 46667777899999999999998 443 3888999999999999998 5555555677889999999
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|.+.. + +.+.. +-+|..|++.+|+
T Consensus 362 N~iE~-L-SGL~K-LYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 362 NKIET-L-SGLRK-LYSLVNLDLSSNQ 385 (490)
T ss_pred hhHhh-h-hhhHh-hhhheeccccccc
Confidence 98752 1 23333 5678889999986
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=7.6e-05 Score=54.63 Aligned_cols=36 Identities=44% Similarity=0.635 Sum_probs=24.0
Q ss_pred CCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCC
Q 006035 508 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544 (663)
Q Consensus 508 ~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~ls 544 (663)
+|+.|+|++|+++ .+|..+.+|++|+.|+|++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5677777777777 56666777777777777777776
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.50 E-value=5.5e-06 Score=92.36 Aligned_cols=106 Identities=23% Similarity=0.315 Sum_probs=80.5
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCC-CCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~-~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.++..- .+..|+.|++|||+.|.|. .+|. .-..+. |+.|.|++|.++ .+ ..+.+|.+|+.|||
T Consensus 188 ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDl 261 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDL 261 (1096)
T ss_pred HhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-hh-hhHHhhhhhhccch
Confidence 4778999999987543 7888999999999999998 5553 222344 999999999987 33 24678999999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCCCCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 571 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~ 571 (663)
++|-|++.-.-.+...+..|..|.+.|||..|.
T Consensus 262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999998653222222345678899999998774
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.49 E-value=5.2e-06 Score=90.44 Aligned_cols=100 Identities=34% Similarity=0.568 Sum_probs=72.7
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|+.|.++ .+|..++.|+ |+.|-+++|+++ .+|..++.+..|..||.+.|++. .+|..++.+.+|+.|++..
T Consensus 123 lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 123 LTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred HHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhh
Confidence 566777777776 4566665554 677777777776 67777777777777777777777 7777777777777777777
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|++. .+|+.+.. ..|..||++.|.
T Consensus 199 n~l~-~lp~El~~--LpLi~lDfScNk 222 (722)
T KOG0532|consen 199 NHLE-DLPEELCS--LPLIRLDFSCNK 222 (722)
T ss_pred hhhh-hCCHHHhC--CceeeeecccCc
Confidence 7777 67777663 347788888886
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.49 E-value=6.1e-05 Score=82.43 Aligned_cols=103 Identities=26% Similarity=0.465 Sum_probs=53.6
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|++++|.+. .+|..+..++.|+.|+++.|+++ .+|...+.++.|+.|++++|+++ .+|..+..+..|+.|.+++
T Consensus 142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSN 218 (394)
T ss_pred cccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcC
Confidence 555555555554 23344555566666666666665 44444445555666666666665 5555444444566666666
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
|+.. .++..+.. +..+..+.+.+|+.
T Consensus 219 N~~~-~~~~~~~~-~~~l~~l~l~~n~~ 244 (394)
T COG4886 219 NSII-ELLSSLSN-LKNLSGLELSNNKL 244 (394)
T ss_pred Ccce-ecchhhhh-cccccccccCCcee
Confidence 6322 22333332 33444455555543
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.28 E-value=9.2e-05 Score=54.18 Aligned_cols=37 Identities=35% Similarity=0.625 Sum_probs=27.4
Q ss_pred CcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCC
Q 006035 483 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 520 (663)
Q Consensus 483 ~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~ 520 (663)
++|+.|+|++|+++ .+|+.+++|++|+.|+|++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35778888888887 56666888888888888888877
No 43
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.22 E-value=1.8e-05 Score=71.60 Aligned_cols=100 Identities=29% Similarity=0.411 Sum_probs=76.9
Q ss_pred EEEccCCCCcccCC---ccccCCCcCCcccCcCccccccCCCCCCC-CCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 463 GLGLDNQGLRGFLP---NGISKLRHLQSINLSGNSIRGAIPSSLGT-IASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 463 ~L~Ls~n~l~g~~p---~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~-L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++|+++.|- .++ ..+.....|+.++|++|.|. ..|+.|.. .+.++.|+|++|+++ .+|.+++.++.|+.|++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 4666666653 233 35556677888999999998 56655554 568999999999999 99999999999999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+.|.|. ..|.-+.. +.++-.|+..+|.
T Consensus 108 ~~N~l~-~~p~vi~~-L~~l~~Lds~~na 134 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAP-LIKLDMLDSPENA 134 (177)
T ss_pred ccCccc-cchHHHHH-HHhHHHhcCCCCc
Confidence 999998 66777766 5566666666654
No 44
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.08 E-value=0.00019 Score=78.60 Aligned_cols=102 Identities=32% Similarity=0.548 Sum_probs=48.6
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|++++|.+.. +|...+.++.|+.|++++|++. .+|..+..+..|+.|++++|.+. .++..+.++..+..|.+.+
T Consensus 165 L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~ 241 (394)
T COG4886 165 LKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSN 241 (394)
T ss_pred ccccccCCchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCC
Confidence 4455555555542 2333334455555555555555 44444444444555555555433 3444445555555555555
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|++. .++..+.. +.+++.+++++|.
T Consensus 242 n~~~-~~~~~~~~-l~~l~~L~~s~n~ 266 (394)
T COG4886 242 NKLE-DLPESIGN-LSNLETLDLSNNQ 266 (394)
T ss_pred ceee-eccchhcc-ccccceecccccc
Confidence 5544 22333332 3345555555553
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.70 E-value=0.00065 Score=81.13 Aligned_cols=103 Identities=29% Similarity=0.351 Sum_probs=68.5
Q ss_pred EeEEEccCCC--CcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 461 IDGLGLDNQG--LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 461 l~~L~Ls~n~--l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
+++|-+..|. +.-.....|..|+.|+.|||++|.=-+.+|..+++|-+|++|+|+...+. .+|..+.+|..|.+||+
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNL 625 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecc
Confidence 5666666665 33333334667778888888877666677888888888888888887777 77777778878888887
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTD 565 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~ 565 (663)
..+.-...+|..... +.+|+.|.+..
T Consensus 626 ~~~~~l~~~~~i~~~-L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 626 EVTGRLESIPGILLE-LQSLRVLRLPR 651 (889)
T ss_pred ccccccccccchhhh-cccccEEEeec
Confidence 766544344433332 55666665443
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.16 E-value=0.00038 Score=78.23 Aligned_cols=95 Identities=26% Similarity=0.400 Sum_probs=70.2
Q ss_pred EccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCccc-ccCCCCCCEEeccCCcC
Q 006035 465 GLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES-LGQLTALRRLNLNGNTL 543 (663)
Q Consensus 465 ~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~-l~~l~~L~~L~Ls~N~l 543 (663)
+.+.|.|. .+..++.-|+.|++|||++|+++.. . .+..|+.|+.|||+.|.|. .+|.. ...+ .|+.|+|++|.+
T Consensus 170 ~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 170 SFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNAL 244 (1096)
T ss_pred hcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHH
Confidence 33444443 3445677789999999999999843 3 7888999999999999999 67753 2333 499999999998
Q ss_pred CccCCchhhhccCCCCEEeccCCC
Q 006035 544 SGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 544 sg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+ .+ ..+.+ +.+|..||++.|-
T Consensus 245 ~-tL-~gie~-LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 245 T-TL-RGIEN-LKSLYGLDLSYNL 265 (1096)
T ss_pred H-hh-hhHHh-hhhhhccchhHhh
Confidence 7 22 22333 6778889999884
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.97 E-value=0.0029 Score=69.87 Aligned_cols=79 Identities=30% Similarity=0.375 Sum_probs=55.2
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|.+|.|..... .+..|++|+.|+|++|.|+... .+..++.|+.|++++|.++ .+.. +..+..|+.+++++
T Consensus 97 l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~-~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 97 LEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISG-LESLKSLKLLDLSY 171 (414)
T ss_pred eeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcch-hccC-CccchhhhcccCCc
Confidence 6678888888775433 2667788888888888887443 3556666888888888877 3332 34467778888888
Q ss_pred CcCC
Q 006035 541 NTLS 544 (663)
Q Consensus 541 N~ls 544 (663)
|++.
T Consensus 172 n~i~ 175 (414)
T KOG0531|consen 172 NRIV 175 (414)
T ss_pred chhh
Confidence 8776
No 48
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0022 Score=68.49 Aligned_cols=83 Identities=23% Similarity=0.325 Sum_probs=40.0
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCC--CCCCCCCCCcEEeCCCCCCCC-CCccc-----ccCCCC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIP--SSLGTIASLEVLDLSYNFFNG-SIPES-----LGQLTA 532 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip--~~~~~L~~L~~LdLs~N~l~g-~iP~~-----l~~l~~ 532 (663)
+..|.|..|+..+....+..-+..|+.|||++|++- ..+ ...+.|+.|+.|+++.+.+.. .+|+. ...+++
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 344555555433333333444555566666665554 222 234455555556665555442 12222 234455
Q ss_pred CCEEeccCCcCC
Q 006035 533 LRRLNLNGNTLS 544 (663)
Q Consensus 533 L~~L~Ls~N~ls 544 (663)
|+.|+++.|++.
T Consensus 303 L~~L~i~~N~I~ 314 (505)
T KOG3207|consen 303 LEYLNISENNIR 314 (505)
T ss_pred ceeeecccCccc
Confidence 666666666553
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.93 E-value=0.0037 Score=74.79 Aligned_cols=82 Identities=33% Similarity=0.431 Sum_probs=73.2
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.+..|||++|.=-+.+|..++.|-+|++|+|+...+. .+|..+++|..|.+||+..+.-...+|.-+..|.+|++|.|-
T Consensus 572 ~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 4888999998877899999999999999999999999 999999999999999999987666677777779999999886
Q ss_pred CCc
Q 006035 540 GNT 542 (663)
Q Consensus 540 ~N~ 542 (663)
.-.
T Consensus 651 ~s~ 653 (889)
T KOG4658|consen 651 RSA 653 (889)
T ss_pred ccc
Confidence 543
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.70 E-value=0.01 Score=57.50 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=40.8
Q ss_pred eEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCc--ccccCCCCCCEEecc
Q 006035 462 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRLNLN 539 (663)
Q Consensus 462 ~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP--~~l~~l~~L~~L~Ls 539 (663)
..+||++|.+.-. ..|..+.+|+.|.|.+|+|+..-|.--..++.|+.|.|.+|.+. .+- +-+..++.|++|.+-
T Consensus 45 d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 45 DAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeec
Confidence 3466666665421 23445566666666666666333332233455666666666554 111 124445555555555
Q ss_pred CCcCC
Q 006035 540 GNTLS 544 (663)
Q Consensus 540 ~N~ls 544 (663)
+|+.+
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 55544
No 51
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=95.62 E-value=0.014 Score=42.40 Aligned_cols=35 Identities=43% Similarity=0.935 Sum_probs=23.7
Q ss_pred hHHHHHHHHhhhcCCC-CC--CCCCCC----CCCCCCCCCCCCcccc
Q 006035 412 PEEVRALQVLKNSLDL-PH--RFGWNG----DPCVPQQHPWSGADCQ 451 (663)
Q Consensus 412 ~~d~~aL~~~k~~~~~-~~--~~~W~~----~pC~p~~~~w~gv~C~ 451 (663)
+.|+.+|++||.++.. +. ..+|+. +|| .|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C-----~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPC-----SWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CC-----CSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCe-----eeccEEeC
Confidence 5789999999999884 42 358974 455 59999994
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.38 E-value=0.0049 Score=68.06 Aligned_cols=100 Identities=32% Similarity=0.467 Sum_probs=73.4
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
+..+.+..|.+.. +-..+..+++|+.|+|..|++. .+...+..+++|+.|||++|+++...+ +..+..|+.|++++
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc--hhhccchhhheecc
Confidence 3344555565553 3345778899999999999998 444447889999999999999984433 55677799999999
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|.++ .+.. +.. +..|+.++++.|.
T Consensus 150 N~i~-~~~~-~~~-l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 150 NLIS-DISG-LES-LKSLKLLDLSYNR 173 (414)
T ss_pred Ccch-hccC-Ccc-chhhhcccCCcch
Confidence 9998 3332 222 5667788888875
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.33 E-value=0.015 Score=58.62 Aligned_cols=80 Identities=28% Similarity=0.406 Sum_probs=46.3
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCc--cccccCCCCCCCCCCCcEEeCCCCCCCCCCccc---ccCCCCCCE
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGN--SIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES---LGQLTALRR 535 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N--~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~---l~~l~~L~~ 535 (663)
++.|++.+..++.. ..+-.|++|+.|.||.| +.++.++...-.+++|++|+|+.|++.- +.. +..+.+|..
T Consensus 45 le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 45 LELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKS 120 (260)
T ss_pred hhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhh
Confidence 33444444444321 23445667777777777 5555555555566777777777777651 322 334455666
Q ss_pred EeccCCcCC
Q 006035 536 LNLNGNTLS 544 (663)
Q Consensus 536 L~Ls~N~ls 544 (663)
|++.++.-+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 677666554
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.0093 Score=63.90 Aligned_cols=107 Identities=22% Similarity=0.251 Sum_probs=71.0
Q ss_pred eEeEEEccCCCCccc-CCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCc--ccccCCCCCCEE
Q 006035 460 VIDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRL 536 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP--~~l~~l~~L~~L 536 (663)
+++.|.|+.++|++. +-..+..+++|+.|+|..|..-+.-......+..|+.|||++|++- ..+ ..++.++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhh
Confidence 577888888888853 2234456788888888888633233334455778888898888876 444 346778888888
Q ss_pred eccCCcCCc-cCCch----hhhccCCCCEEeccCCC
Q 006035 537 NLNGNTLSG-RVPAA----LGGRLLHRASFNFTDNA 567 (663)
Q Consensus 537 ~Ls~N~lsg-~iP~~----~~~~l~~L~~l~l~~N~ 567 (663)
+++.+.++. .+|+. .-..+++|+.|++..|+
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 888887753 22322 01235677888888776
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.64 E-value=0.0066 Score=61.99 Aligned_cols=71 Identities=21% Similarity=0.282 Sum_probs=30.9
Q ss_pred CCCCcccccCCCCccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccC-CCCCCCCCCCcEEeCCCC
Q 006035 444 PWSGADCQFDRTSHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLGTIASLEVLDLSYN 517 (663)
Q Consensus 444 ~w~gv~C~~~~~~~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~i-p~~~~~L~~L~~LdLs~N 517 (663)
.|..+.|-... ..+++.|+|+.|.|+..|...-..+.+|+.|-|.+..|.-.- ...+..++.++.|.+|.|
T Consensus 85 dWseI~~ile~---lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 85 DWSEIGAILEQ---LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cHHHHHHHHhc---CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 46655554322 123555555555554333222123344444444444443221 122334555555555555
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.07 E-value=0.068 Score=52.03 Aligned_cols=81 Identities=21% Similarity=0.293 Sum_probs=59.7
Q ss_pred CcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCc--hhhhccCCCCE
Q 006035 483 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPA--ALGGRLLHRAS 560 (663)
Q Consensus 483 ~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~--~~~~~l~~L~~ 560 (663)
.+...+||++|.+- .+ +.|..++.|.+|.|++|+++-.-|.--.-+++|+.|.|.+|.+. .+-+ -+. .++.|+.
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa-~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLA-SCPKLEY 117 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhc-cCCccce
Confidence 46678999999986 33 35778899999999999999666654445678999999999885 2211 112 2467888
Q ss_pred EeccCCC
Q 006035 561 FNFTDNA 567 (663)
Q Consensus 561 l~l~~N~ 567 (663)
|.+-+|+
T Consensus 118 Ltll~Np 124 (233)
T KOG1644|consen 118 LTLLGNP 124 (233)
T ss_pred eeecCCc
Confidence 8888887
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.61 E-value=0.054 Score=54.66 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=60.9
Q ss_pred CCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCC--CCCCCCcccccCCCCCCEEeccCCcCCccCCchhh
Q 006035 475 LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN--FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALG 552 (663)
Q Consensus 475 ~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N--~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~ 552 (663)
+......+..|+.|.+.+..++.. ..+..|++|+.|++|.| +..+.++...-.+++|++|+|++|++. +++.+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccc
Confidence 333344456667777777766622 24567889999999999 677777766677799999999999985 233332
Q ss_pred h--ccCCCCEEeccCCC
Q 006035 553 G--RLLHRASFNFTDNA 567 (663)
Q Consensus 553 ~--~l~~L~~l~l~~N~ 567 (663)
. .+.+|..|++.++.
T Consensus 111 pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCS 127 (260)
T ss_pred hhhhhcchhhhhcccCC
Confidence 2 14557777777664
No 58
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.06 E-value=0.032 Score=34.20 Aligned_cols=18 Identities=50% Similarity=0.888 Sum_probs=7.9
Q ss_pred CCcccCcCccccccCCCCC
Q 006035 485 LQSINLSGNSIRGAIPSSL 503 (663)
Q Consensus 485 L~~L~Ls~N~l~g~ip~~~ 503 (663)
|+.|||++|+|+ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 344444444444 444333
No 59
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.04 E-value=0.025 Score=34.66 Aligned_cols=18 Identities=61% Similarity=0.719 Sum_probs=8.8
Q ss_pred CcEEeCCCCCCCCCCcccc
Q 006035 509 LEVLDLSYNFFNGSIPESL 527 (663)
Q Consensus 509 L~~LdLs~N~l~g~iP~~l 527 (663)
|++|||++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 445555555555 444443
No 60
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.56 E-value=0.0063 Score=60.10 Aligned_cols=82 Identities=18% Similarity=0.147 Sum_probs=73.1
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
+++.||++.|.+. .+...|..++.|..|+|+.|++. -+|..++++..+..+++-.|.++ ..|.+.++++.++.+++-
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhc
Confidence 6889999999875 34557888899999999999988 78999999999999999999998 889999999999999999
Q ss_pred CCcCC
Q 006035 540 GNTLS 544 (663)
Q Consensus 540 ~N~ls 544 (663)
.|.|.
T Consensus 120 ~~~~~ 124 (326)
T KOG0473|consen 120 KTEFF 124 (326)
T ss_pred cCcch
Confidence 99886
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.84 E-value=0.049 Score=55.87 Aligned_cols=85 Identities=25% Similarity=0.264 Sum_probs=65.9
Q ss_pred eEeEEEccCCCCcc--cCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCC-cccccCCCCCCEE
Q 006035 460 VIDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRL 536 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~i-P~~l~~l~~L~~L 536 (663)
+|..+||..|.|+. .+..-+.+|++|+.|+|+.|.|+..|-..-..+.+|+.|-|.+-.|...- -..+..++.++.|
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtel 151 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTEL 151 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhh
Confidence 48889999999974 34556778999999999999999766433356788999999888776433 3456778889999
Q ss_pred eccCCcCC
Q 006035 537 NLNGNTLS 544 (663)
Q Consensus 537 ~Ls~N~ls 544 (663)
+++.|.+.
T Consensus 152 HmS~N~~r 159 (418)
T KOG2982|consen 152 HMSDNSLR 159 (418)
T ss_pred hhccchhh
Confidence 99999553
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=89.88 E-value=0.55 Score=51.23 Aligned_cols=13 Identities=31% Similarity=0.475 Sum_probs=7.0
Q ss_pred CCCEEeccCCcCC
Q 006035 532 ALRRLNLNGNTLS 544 (663)
Q Consensus 532 ~L~~L~Ls~N~ls 544 (663)
+|+.|+++++...
T Consensus 157 SLk~L~Is~c~~i 169 (426)
T PRK15386 157 SLKTLSLTGCSNI 169 (426)
T ss_pred cccEEEecCCCcc
Confidence 4555666555443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=0.027 Score=57.17 Aligned_cols=75 Identities=23% Similarity=0.285 Sum_probs=49.9
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccC-CCCCCCCCCCcEEeCCCCCCCCCCccc-----ccCCCCCC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLGTIASLEVLDLSYNFFNGSIPES-----LGQLTALR 534 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~i-p~~~~~L~~L~~LdLs~N~l~g~iP~~-----l~~l~~L~ 534 (663)
++.|.|+-|.|+..- .+..|++|+.|+|..|.|...- -..+.+|++|+.|.|..|.-.|.-+.. +.-|++|+
T Consensus 43 lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLk 120 (388)
T KOG2123|consen 43 LEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLK 120 (388)
T ss_pred ceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccch
Confidence 777888888877543 3567788888888888876221 124567777788888877777665532 34456666
Q ss_pred EEe
Q 006035 535 RLN 537 (663)
Q Consensus 535 ~L~ 537 (663)
.||
T Consensus 121 KLD 123 (388)
T KOG2123|consen 121 KLD 123 (388)
T ss_pred hcc
Confidence 654
No 64
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.57 E-value=0.17 Score=45.44 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=17.8
Q ss_pred CCceEEEEchhHHHHHHHHHHHHHHHHHHHhhHH
Q 006035 583 STSAKIGIGFGVLGLIFLLIICSMVWWKRRQNIL 616 (663)
Q Consensus 583 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~rr~~~~ 616 (663)
....+++|++++++++++++++++++.||++||.
T Consensus 62 s~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp S-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred cccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3345566777777766655555555555555443
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.55 E-value=1.3 Score=48.43 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=14.0
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCc
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGN 493 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N 493 (663)
|+.|.++++.--..+|..+ ..+|+.|+|++|
T Consensus 74 LtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 74 LTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred CcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 5555555432222333322 135555555555
No 66
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=87.42 E-value=0.58 Score=49.25 Aligned_cols=105 Identities=15% Similarity=0.186 Sum_probs=65.9
Q ss_pred eEeEEEccCCCCcccCCc----cccCCCcCCcccCcCcccccc-------------CCCCCCCCCCCcEEeCCCCCCCCC
Q 006035 460 VIDGLGLDNQGLRGFLPN----GISKLRHLQSINLSGNSIRGA-------------IPSSLGTIASLEVLDLSYNFFNGS 522 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~----~~~~L~~L~~L~Ls~N~l~g~-------------ip~~~~~L~~L~~LdLs~N~l~g~ 522 (663)
+++.|+||.|.+.-..+. -+.+++.|++|.|.+|.+.-. .....+.-+.|+.++..+|++.-.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 588899999998755544 345678999999999988521 122345567788888888887622
Q ss_pred Cc----ccccCCCCCCEEeccCCcCCccCCchh------hhccCCCCEEeccCCC
Q 006035 523 IP----ESLGQLTALRRLNLNGNTLSGRVPAAL------GGRLLHRASFNFTDNA 567 (663)
Q Consensus 523 iP----~~l~~l~~L~~L~Ls~N~lsg~iP~~~------~~~l~~L~~l~l~~N~ 567 (663)
-. ..+...+.|+.+.++.|.+. |... ....++|+.|++.+|-
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~---~eG~~al~eal~~~~~LevLdl~DNt 224 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIR---PEGVTALAEALEHCPHLEVLDLRDNT 224 (382)
T ss_pred cHHHHHHHHHhccccceEEEeccccc---CchhHHHHHHHHhCCcceeeecccch
Confidence 11 22334456666666666654 2211 1124566666666663
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=85.88 E-value=0.44 Score=55.88 Aligned_cols=57 Identities=23% Similarity=0.361 Sum_probs=23.9
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccc-cCCCCCCCCCCCcEEeCCCCCC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFF 519 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g-~ip~~~~~L~~L~~LdLs~N~l 519 (663)
+..||+|+.+++-. ..+++|.+|+.|-+.+=.+.. ..-..+.+|++|+.||+|....
T Consensus 175 L~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 175 LRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKN 232 (699)
T ss_pred cceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccc
Confidence 44455555444422 334444444444443333321 0011334455555555554443
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=85.29 E-value=0.56 Score=26.77 Aligned_cols=13 Identities=46% Similarity=0.562 Sum_probs=4.6
Q ss_pred CCcEEeCCCCCCC
Q 006035 508 SLEVLDLSYNFFN 520 (663)
Q Consensus 508 ~L~~LdLs~N~l~ 520 (663)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.25 E-value=0.021 Score=56.48 Aligned_cols=87 Identities=18% Similarity=0.196 Sum_probs=73.1
Q ss_pred cccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCC
Q 006035 478 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 557 (663)
Q Consensus 478 ~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~ 557 (663)
++....+.+.|||+.|++- .+-..|+-++.|..|||+.|++. .+|..++++..+..+++..|.++ ..|.+++. .+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k-~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK-EPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc-cCC
Confidence 6677788999999999987 55667888999999999999988 88988899888999999999988 78888776 667
Q ss_pred CCEEeccCCCC
Q 006035 558 RASFNFTDNAG 568 (663)
Q Consensus 558 L~~l~l~~N~~ 568 (663)
++.+++-+|++
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 77777777763
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=83.53 E-value=0.19 Score=52.71 Aligned_cols=108 Identities=19% Similarity=0.307 Sum_probs=75.6
Q ss_pred eEeEEEccCCCCcc----cCCccccCCCcCCcccCcCcccccc----CCCCCCCCCCCcEEeCCCCCCCCCCcccc----
Q 006035 460 VIDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIPESL---- 527 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~l~g~iP~~l---- 527 (663)
.+..+.++.|.|.- .+...|.++++|+.|||..|-|+-. +...+..++.|+.|+++++.+...-...+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 36677777777642 2344678899999999999998743 23556778899999999998874333222
Q ss_pred -cCCCCCCEEeccCCcCCccCC----chhhhccCCCCEEeccCCCC
Q 006035 528 -GQLTALRRLNLNGNTLSGRVP----AALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 528 -~~l~~L~~L~Ls~N~lsg~iP----~~~~~~l~~L~~l~l~~N~~ 568 (663)
...++|++|.|.+|.++-.=- ..+.. .+.|..|++++|.+
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 236889999999998863211 11222 46688899999975
No 71
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=83.34 E-value=0.52 Score=55.33 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=74.2
Q ss_pred eEeEEEccCCCCcc-cCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCC-CCcccccCCCCCCEEe
Q 006035 460 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLN 537 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~ 537 (663)
.+++|.+++-.+.. .+-.-..++++|..||+|+.+++-. ..+++|++|+.|-+.+=.+.- ..-..+-+|++|++||
T Consensus 149 sL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD 226 (699)
T KOG3665|consen 149 SLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD 226 (699)
T ss_pred ccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence 37788888777643 2334456789999999999999833 567889999999888776652 1123577899999999
Q ss_pred ccCCcCCccCCch------hhhccCCCCEEeccCC
Q 006035 538 LNGNTLSGRVPAA------LGGRLLHRASFNFTDN 566 (663)
Q Consensus 538 Ls~N~lsg~iP~~------~~~~l~~L~~l~l~~N 566 (663)
+|...... .+.- .+..++.|+.||.++.
T Consensus 227 IS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 227 ISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred cccccccc-chHHHHHHHHhcccCccccEEecCCc
Confidence 99876652 2211 1233678899998875
No 72
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=83.27 E-value=0.75 Score=32.61 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=4.3
Q ss_pred eEEEEchhHHH
Q 006035 586 AKIGIGFGVLG 596 (663)
Q Consensus 586 ~~~~i~~~~~~ 596 (663)
..++..+++.+
T Consensus 11 vaIa~~VvVPV 21 (40)
T PF08693_consen 11 VAIAVGVVVPV 21 (40)
T ss_pred EEEEEEEEech
Confidence 34444433333
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=82.74 E-value=1.7 Score=44.48 Aligned_cols=105 Identities=17% Similarity=0.239 Sum_probs=72.1
Q ss_pred eEeEEEccCCCCcccCCccc----cCCCcCCcccCcCccccccCC--------------CCCCCCCCCcEEeCCCCCCCC
Q 006035 460 VIDGLGLDNQGLRGFLPNGI----SKLRHLQSINLSGNSIRGAIP--------------SSLGTIASLEVLDLSYNFFNG 521 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~----~~L~~L~~L~Ls~N~l~g~ip--------------~~~~~L~~L~~LdLs~N~l~g 521 (663)
+++.++||.|.+....|+.+ ++-+.|.+|.|++|.+. ++. +...+-+.|+..+...|+|..
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen 171 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN 171 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc
Confidence 58889999999988777754 55688999999999885 321 223456789999999999873
Q ss_pred CCccc----ccCCCCCCEEeccCCcCCccCCchhhh-------ccCCCCEEeccCCCC
Q 006035 522 SIPES----LGQLTALRRLNLNGNTLSGRVPAALGG-------RLLHRASFNFTDNAG 568 (663)
Q Consensus 522 ~iP~~----l~~l~~L~~L~Ls~N~lsg~iP~~~~~-------~l~~L~~l~l~~N~~ 568 (663)
..-.. +.....|+.+.+..|-+. |..+.. ...+|+.|++..|-+
T Consensus 172 gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 172 GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccch
Confidence 22211 222247888888888776 553211 146788888888853
No 74
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=82.16 E-value=1.9 Score=38.44 Aligned_cols=99 Identities=15% Similarity=0.258 Sum_probs=52.5
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.+.+.. .+...-...|.+++.|+.+.+..+ +...-...|.++.+|+.+.+.+ .+...-...+..+++|+.+++..
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETT
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCc
Confidence 66677764 566555567888888888888775 5544455677887889988876 44322234566688888888876
Q ss_pred CcCCccCCchhhhccCCCCEEeccC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTD 565 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~ 565 (663)
| +. .++....... .++.+.+.+
T Consensus 91 ~-~~-~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 91 N-IT-EIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp T--B-EEHTTTTTT--T--EEE-TT
T ss_pred c-cc-EEchhhhcCC-CceEEEECC
Confidence 5 43 3444333323 566666554
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.09 E-value=1.4 Score=27.82 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=9.6
Q ss_pred CCCCEEeccCCcCCccCCch
Q 006035 531 TALRRLNLNGNTLSGRVPAA 550 (663)
Q Consensus 531 ~~L~~L~Ls~N~lsg~iP~~ 550 (663)
++|+.|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.09 E-value=1.4 Score=27.82 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=9.6
Q ss_pred CCCCEEeccCCcCCccCCch
Q 006035 531 TALRRLNLNGNTLSGRVPAA 550 (663)
Q Consensus 531 ~~L~~L~Ls~N~lsg~iP~~ 550 (663)
++|+.|+|++|+++ .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555555 44443
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.87 E-value=0.19 Score=51.29 Aligned_cols=80 Identities=28% Similarity=0.286 Sum_probs=63.1
Q ss_pred cCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCc--ccccCCCCCCEEeccCCcCCccCCchh----hh
Q 006035 480 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIP--ESLGQLTALRRLNLNGNTLSGRVPAAL----GG 553 (663)
Q Consensus 480 ~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP--~~l~~l~~L~~L~Ls~N~lsg~iP~~~----~~ 553 (663)
.+|+.|+.|.||-|.++..- .+..+++|+.|.|..|.+. .+- ..+.++++|+.|.|..|...|.-+... ..
T Consensus 38 ~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 46889999999999998443 4778999999999999887 333 357899999999999999988766542 23
Q ss_pred ccCCCCEEe
Q 006035 554 RLLHRASFN 562 (663)
Q Consensus 554 ~l~~L~~l~ 562 (663)
.+++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 366776664
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=79.01 E-value=1.7 Score=27.47 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=14.3
Q ss_pred CCCCcEEeCCCCCCCCCCcc
Q 006035 506 IASLEVLDLSYNFFNGSIPE 525 (663)
Q Consensus 506 L~~L~~LdLs~N~l~g~iP~ 525 (663)
|++|+.|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 467888888888888 5554
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=79.01 E-value=1.7 Score=27.47 Aligned_cols=19 Identities=42% Similarity=0.635 Sum_probs=14.3
Q ss_pred CCCCcEEeCCCCCCCCCCcc
Q 006035 506 IASLEVLDLSYNFFNGSIPE 525 (663)
Q Consensus 506 L~~L~~LdLs~N~l~g~iP~ 525 (663)
|++|+.|+|++|+++ .+|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCCEEECCCCcCC-cCCH
Confidence 467888888888888 5554
No 80
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=78.98 E-value=0.88 Score=46.41 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=17.9
Q ss_pred cCCCcCCcccCcCccccccCCCC----CCCCCCCcEEeCCCCCC
Q 006035 480 SKLRHLQSINLSGNSIRGAIPSS----LGTIASLEVLDLSYNFF 519 (663)
Q Consensus 480 ~~L~~L~~L~Ls~N~l~g~ip~~----~~~L~~L~~LdLs~N~l 519 (663)
.+|++|+..+||.|.+....|.. +++-+.|.+|.|++|.+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 34444555555555544444332 22334444555544444
No 81
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=78.93 E-value=1.5 Score=44.84 Aligned_cols=88 Identities=16% Similarity=0.164 Sum_probs=58.2
Q ss_pred EEEccCCCCCCcCCCCCceeeccCCccC------Ccccccc--CCCCCCCCcceeeeccCCCCCCceEEEeecCCceEEE
Q 006035 67 MRISCGARQNIHSPPTNTLWFKDFAYTG------GIPANAT--RPSFITPPLKTLRYFPLSEGPENCYIINRVPKGHYNV 138 (663)
Q Consensus 67 ~~IdCG~~~~~~~d~~g~~w~~D~~~~~------g~~~~~~--~~~~~~~~y~t~R~F~~~~g~~~cY~~~~~~~g~ylv 138 (663)
..++||.... +|..|+.|-.|.--.- |....+. ........|+|+|+=. ..|.|..|+...|-|-+
T Consensus 62 ~aVncGgdaa--vd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~ne----etFgyd~pik~dgdyal 135 (355)
T KOG3593|consen 62 PAVNCGGDAA--VDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNE----ETFGYDVPIKEDGDYAL 135 (355)
T ss_pred heeccCChhh--hcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccch----hhhcccccccCCCceeh
Confidence 5699998765 4667999998842111 2111111 1111235799999964 35889999999999998
Q ss_pred EEEEeCcCCCCCCCCCcEEEEEC
Q 006035 139 RIFFGLVTLTSFDHEPLFDISVE 161 (663)
Q Consensus 139 Rl~F~~~~y~~~~~~~~Fdv~~~ 161 (663)
=+.|...+++. .+.-.|||.++
T Consensus 136 vlkfaevyF~~-~q~kvfdvrln 157 (355)
T KOG3593|consen 136 VLKFAEVYFKT-CQHKVFDVRLN 157 (355)
T ss_pred hhhHHHHHHHh-hhhhheeeeec
Confidence 89996554332 23447999998
No 82
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=76.87 E-value=0.79 Score=47.59 Aligned_cols=9 Identities=33% Similarity=0.490 Sum_probs=0.0
Q ss_pred ccCCCCCCC
Q 006035 653 TAAENGPSL 661 (663)
Q Consensus 653 ~~~~~~~~~ 661 (663)
-..|++|++
T Consensus 213 IlkeEkPPl 221 (290)
T PF05454_consen 213 ILKEEKPPL 221 (290)
T ss_dssp ---------
T ss_pred eecccCCCC
Confidence 345666655
No 83
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=76.85 E-value=1.6 Score=30.49 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=8.9
Q ss_pred EEEchhHHHHHHHHHHHHH
Q 006035 588 IGIGFGVLGLIFLLIICSM 606 (663)
Q Consensus 588 ~~i~~~~~~~~~~~~~~~~ 606 (663)
+++++++++.+++++++++
T Consensus 6 IaIIv~V~vg~~iiii~~~ 24 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMF 24 (38)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4445555554444444443
No 84
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=75.26 E-value=1 Score=41.79 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=8.2
Q ss_pred CceEEEEchhHHHH
Q 006035 584 TSAKIGIGFGVLGL 597 (663)
Q Consensus 584 ~~~~~~i~~~~~~~ 597 (663)
+..++++++|+.+.
T Consensus 48 knIVIGvVVGVGg~ 61 (154)
T PF04478_consen 48 KNIVIGVVVGVGGP 61 (154)
T ss_pred ccEEEEEEecccHH
Confidence 34667777765443
No 85
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=75.12 E-value=1.5 Score=45.95 Aligned_cols=22 Identities=14% Similarity=0.451 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH
Q 006035 596 GLIFLLIICSMVWWKRRQNILR 617 (663)
Q Consensus 596 ~~~~~~~~~~~~~~~rr~~~~~ 617 (663)
+++++.+++.+++++|||+|.+
T Consensus 267 iIVLIMvIIYLILRYRRKKKmk 288 (299)
T PF02009_consen 267 IIVLIMVIIYLILRYRRKKKMK 288 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3344444555566666655444
No 86
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=71.65 E-value=6.3 Score=35.04 Aligned_cols=85 Identities=12% Similarity=0.204 Sum_probs=49.8
Q ss_pred cccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCC
Q 006035 478 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 557 (663)
Q Consensus 478 ~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~ 557 (663)
.|.++.+|+.+.+.. .+...-...|..+..|+.+++..+ +...--..+.++++|+.+.+.+ .+. .++........+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence 577788999999875 566455667889989999999886 6633335677887899999975 333 344444333567
Q ss_pred CCEEeccCC
Q 006035 558 RASFNFTDN 566 (663)
Q Consensus 558 L~~l~l~~N 566 (663)
++.+.+..+
T Consensus 83 l~~i~~~~~ 91 (129)
T PF13306_consen 83 LKNIDIPSN 91 (129)
T ss_dssp ECEEEETTT
T ss_pred ccccccCcc
Confidence 777877654
No 87
>PF15102 TMEM154: TMEM154 protein family
Probab=65.55 E-value=1.8 Score=39.93 Aligned_cols=7 Identities=14% Similarity=-0.178 Sum_probs=3.0
Q ss_pred EEEEchh
Q 006035 587 KIGIGFG 593 (663)
Q Consensus 587 ~~~i~~~ 593 (663)
++.|++.
T Consensus 58 iLmIlIP 64 (146)
T PF15102_consen 58 ILMILIP 64 (146)
T ss_pred EEEEeHH
Confidence 4444444
No 88
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=65.31 E-value=3.8 Score=35.34 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=10.8
Q ss_pred CCCceEEEEchhHHHHHH
Q 006035 582 LSTSAKIGIGFGVLGLIF 599 (663)
Q Consensus 582 ~~~~~~~~i~~~~~~~~~ 599 (663)
++...+.+|++++++++.
T Consensus 63 ls~gaiagi~vg~~~~v~ 80 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVVG 80 (96)
T ss_pred cccccEEEEEeehhhHHH
Confidence 345567777776665443
No 89
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=62.83 E-value=0.6 Score=48.21 Aligned_cols=107 Identities=16% Similarity=0.071 Sum_probs=60.1
Q ss_pred eEeEEEccCCC-Ccc-cCCccccCCCcCCcccCcCccccccCCCC-CCC-CCCCcEEeCCCCCCC---CCCcccccCCCC
Q 006035 460 VIDGLGLDNQG-LRG-FLPNGISKLRHLQSINLSGNSIRGAIPSS-LGT-IASLEVLDLSYNFFN---GSIPESLGQLTA 532 (663)
Q Consensus 460 ~l~~L~Ls~n~-l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~-~~~-L~~L~~LdLs~N~l~---g~iP~~l~~l~~ 532 (663)
.++.|+|+.++ ++. ...--+.+|++|..|+|+++.++.++-.. +.. -..|..|+|++..=. ..+..-...+++
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~ 314 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPN 314 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCc
Confidence 37778887754 322 11224667888888888888877554211 111 245677787765311 112222346788
Q ss_pred CCEEeccCCc-CCccCCchhhhccCCCCEEeccCCC
Q 006035 533 LRRLNLNGNT-LSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 533 L~~L~Ls~N~-lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|..|||++|. ++-..-..+.. ++.|+++.++.+-
T Consensus 315 l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY 349 (419)
T KOG2120|consen 315 LVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCY 349 (419)
T ss_pred eeeeccccccccCchHHHHHHh-cchheeeehhhhc
Confidence 8889998764 44211112222 5667788777643
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.86 E-value=5.2 Score=25.67 Aligned_cols=17 Identities=35% Similarity=0.737 Sum_probs=11.1
Q ss_pred CCCEEeccCCcCCccCCc
Q 006035 532 ALRRLNLNGNTLSGRVPA 549 (663)
Q Consensus 532 ~L~~L~Ls~N~lsg~iP~ 549 (663)
+|+.|++++|+|+ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666777777776 5554
No 91
>PTZ00046 rifin; Provisional
Probab=60.61 E-value=7.7 Score=41.36 Aligned_cols=22 Identities=14% Similarity=0.513 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH
Q 006035 597 LIFLLIICSMVWWKRRQNILRA 618 (663)
Q Consensus 597 ~~~~~~~~~~~~~~rr~~~~~~ 618 (663)
.+++.+++++++++|||++.++
T Consensus 327 IVLIMvIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 327 IVLIMVIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHhhhcchhHH
Confidence 3344455556666666665544
No 92
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=60.04 E-value=0.61 Score=48.13 Aligned_cols=84 Identities=24% Similarity=0.270 Sum_probs=45.6
Q ss_pred EeEEEccCCCCcc-cCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCC-CCCC-CcccccCCCCCCEEe
Q 006035 461 IDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-FNGS-IPESLGQLTALRRLN 537 (663)
Q Consensus 461 l~~L~Ls~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~-l~g~-iP~~l~~l~~L~~L~ 537 (663)
++.|||++..|+. .+..-+..+.+|+.|.|.+++|...|-..+.+=.+|+.|||+... ++.. ..--+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5556666665542 222234455666666666666666665566666666666666543 2210 001234556666666
Q ss_pred ccCCcCC
Q 006035 538 LNGNTLS 544 (663)
Q Consensus 538 Ls~N~ls 544 (663)
|+-..++
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 6665554
No 93
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=59.71 E-value=8.3 Score=41.01 Aligned_cols=21 Identities=14% Similarity=0.493 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHH
Q 006035 598 IFLLIICSMVWWKRRQNILRA 618 (663)
Q Consensus 598 ~~~~~~~~~~~~~rr~~~~~~ 618 (663)
+++.+++.+++++|||++.++
T Consensus 323 VLIMvIIYLILRYRRKKKMkK 343 (353)
T TIGR01477 323 VLIMVIIYLILRYRRKKKMKK 343 (353)
T ss_pred HHHHHHHHHHHHhhhcchhHH
Confidence 344455556666666665543
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=58.69 E-value=6.7 Score=51.92 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=28.0
Q ss_pred eCCCCCCCCCCcccccCCCCCCEEeccCCcCCc
Q 006035 513 DLSYNFFNGSIPESLGQLTALRRLNLNGNTLSG 545 (663)
Q Consensus 513 dLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg 545 (663)
||++|+|+-.-+..|..+.+|+.|+|++|.|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 789999995555678889999999999999864
No 95
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=53.71 E-value=3.2 Score=25.63 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=6.4
Q ss_pred CCCCEEeccCCcCC
Q 006035 531 TALRRLNLNGNTLS 544 (663)
Q Consensus 531 ~~L~~L~Ls~N~ls 544 (663)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555554
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=50.44 E-value=13 Score=23.84 Aligned_cols=14 Identities=50% Similarity=0.541 Sum_probs=7.3
Q ss_pred CCCcEEeCCCCCCC
Q 006035 507 ASLEVLDLSYNFFN 520 (663)
Q Consensus 507 ~~L~~LdLs~N~l~ 520 (663)
.+|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 97
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=50.24 E-value=16 Score=36.05 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=10.8
Q ss_pred ceEEEEchhHHHHHHHHHHHHHH
Q 006035 585 SAKIGIGFGVLGLIFLLIICSMV 607 (663)
Q Consensus 585 ~~~~~i~~~~~~~~~~~~~~~~~ 607 (663)
.++++++.|+++++++++++.++
T Consensus 38 ~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 38 KIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred eeeeeeecchhhhHHHHHHHHHH
Confidence 34455555555544444443333
No 98
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=49.43 E-value=5.1 Score=31.50 Aligned_cols=11 Identities=9% Similarity=-0.112 Sum_probs=0.0
Q ss_pred EEEchhHHHHH
Q 006035 588 IGIGFGVLGLI 598 (663)
Q Consensus 588 ~~i~~~~~~~~ 598 (663)
.++++++++++
T Consensus 12 aavIaG~Vvgl 22 (64)
T PF01034_consen 12 AAVIAGGVVGL 22 (64)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 99
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.62 E-value=15 Score=23.80 Aligned_cols=12 Identities=58% Similarity=0.575 Sum_probs=6.0
Q ss_pred CCcEEeCCCCCC
Q 006035 508 SLEVLDLSYNFF 519 (663)
Q Consensus 508 ~L~~LdLs~N~l 519 (663)
.|+.|||++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 345555555544
No 100
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=46.69 E-value=12 Score=38.52 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhh
Q 006035 602 IICSMVWWKRRQN 614 (663)
Q Consensus 602 ~~~~~~~~~rr~~ 614 (663)
++++++|.+|||+
T Consensus 275 liiLYiWlyrrRK 287 (295)
T TIGR01478 275 LIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHhhc
Confidence 3333444455443
No 101
>PTZ00370 STEVOR; Provisional
Probab=45.90 E-value=13 Score=38.32 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q 006035 604 CSMVWWKRRQN 614 (663)
Q Consensus 604 ~~~~~~~rr~~ 614 (663)
++++|.+|||+
T Consensus 273 ilYiwlyrrRK 283 (296)
T PTZ00370 273 ILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHhhc
Confidence 33344444443
No 102
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=45.90 E-value=9.2 Score=40.39 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=13.0
Q ss_pred CCCCCCCCceEEEEchhHHHHHHHHHH
Q 006035 577 ACGPHLSTSAKIGIGFGVLGLIFLLII 603 (663)
Q Consensus 577 ~c~~~~~~~~~~~i~~~~~~~~~~~~~ 603 (663)
.|..... ..++.|+||++++++++++
T Consensus 263 ~C~~D~~-~~~vPIaVG~~La~lvliv 288 (306)
T PF01299_consen 263 ECSSDDT-SDLVPIAVGAALAGLVLIV 288 (306)
T ss_pred cCCcCCc-cchHHHHHHHHHHHHHHHH
Confidence 4654433 4555566665554443333
No 103
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=44.06 E-value=3.2 Score=34.04 Aligned_cols=14 Identities=14% Similarity=-0.154 Sum_probs=10.1
Q ss_pred chhhhhhhcCCCCC
Q 006035 635 LSHDIQLARHYNHH 648 (663)
Q Consensus 635 ~~~eiq~atnnf~~ 648 (663)
+|++...|-..|..
T Consensus 58 TYEDP~qAV~eFAk 71 (75)
T PF14575_consen 58 TYEDPNQAVREFAK 71 (75)
T ss_dssp GSSSHHHHHHHCSS
T ss_pred cccCHHHHHHHHHh
Confidence 57888888777754
No 104
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=43.32 E-value=61 Score=23.10 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 006035 607 VWWKRRQ 613 (663)
Q Consensus 607 ~~~~rr~ 613 (663)
+.+||+.
T Consensus 28 ~iYRKw~ 34 (43)
T PF08114_consen 28 FIYRKWQ 34 (43)
T ss_pred HHHHHHH
Confidence 3333333
No 105
>PHA03265 envelope glycoprotein D; Provisional
Probab=42.55 E-value=33 Score=36.30 Aligned_cols=13 Identities=8% Similarity=0.309 Sum_probs=8.1
Q ss_pred eehhHHHHHHHHH
Q 006035 38 IRIFCFSYCFMLL 50 (663)
Q Consensus 38 ~~~~~~~~~~~~~ 50 (663)
+..|++.|.+|.+
T Consensus 11 ~~~~~~~~~~~~~ 23 (402)
T PHA03265 11 RLVFAMAIAILSV 23 (402)
T ss_pred eeHHHHHHHHHHH
Confidence 6677777665543
No 106
>PF15050 SCIMP: SCIMP protein
Probab=41.34 E-value=10 Score=33.55 Aligned_cols=8 Identities=0% Similarity=-0.359 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 006035 602 IICSMVWW 609 (663)
Q Consensus 602 ~~~~~~~~ 609 (663)
+++++|.+
T Consensus 24 glIlyCvc 31 (133)
T PF15050_consen 24 GLILYCVC 31 (133)
T ss_pred HHHHHHHH
Confidence 33333333
No 107
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=39.89 E-value=26 Score=29.28 Aligned_cols=16 Identities=38% Similarity=0.556 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhh
Q 006035 599 FLLIICSMVWWKRRQN 614 (663)
Q Consensus 599 ~~~~~~~~~~~~rr~~ 614 (663)
++++++.++|+++||+
T Consensus 45 il~VilwfvCC~kRkr 60 (94)
T PF05393_consen 45 ILLVILWFVCCKKRKR 60 (94)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3344444444444443
No 108
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=39.10 E-value=31 Score=33.96 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=12.4
Q ss_pred eEEEEchhH-HHHHHHHHHHHHHHHHHHhhH
Q 006035 586 AKIGIGFGV-LGLIFLLIICSMVWWKRRQNI 615 (663)
Q Consensus 586 ~~~~i~~~~-~~~~~~~~~~~~~~~~rr~~~ 615 (663)
..|++++.+ ++++++++..+++++.||..+
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~ 131 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRSWS 131 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhccCC
Confidence 334444333 233333344444555555433
No 109
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=36.08 E-value=20 Score=34.88 Aligned_cols=27 Identities=22% Similarity=0.634 Sum_probs=13.5
Q ss_pred eEEEEchhHHHHHHHHHHHHHHHHHHH
Q 006035 586 AKIGIGFGVLGLIFLLIICSMVWWKRR 612 (663)
Q Consensus 586 ~~~~i~~~~~~~~~~~~~~~~~~~~rr 612 (663)
..++|++.++++++++++++++++.||
T Consensus 158 ~~laI~lPvvv~~~~~~~~~~~~~~R~ 184 (189)
T PF14610_consen 158 YALAIALPVVVVVLALIMYGFFFWNRK 184 (189)
T ss_pred eeEEEEccHHHHHHHHHHHhhheeecc
Confidence 345555555555555555555554443
No 110
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.92 E-value=6.9 Score=38.46 Aligned_cols=80 Identities=25% Similarity=0.224 Sum_probs=44.9
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccC-CCCCC-CCCCCcEEeCCCCC-CCCCCcccccCCCCCCEE
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI-PSSLG-TIASLEVLDLSYNF-FNGSIPESLGQLTALRRL 536 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~i-p~~~~-~L~~L~~LdLs~N~-l~g~iP~~l~~l~~L~~L 536 (663)
-|+.++-++..|...=-..+.+|+.|+.|.+.++.--+.- -..++ -.++|+.|+|+.|. +|..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4888999888887655556666777777766655421100 00111 24567777777663 332222334455666655
Q ss_pred ecc
Q 006035 537 NLN 539 (663)
Q Consensus 537 ~Ls 539 (663)
.|.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 554
No 111
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=33.67 E-value=31 Score=39.42 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=5.5
Q ss_pred EEEECCeec
Q 006035 343 DILINGDIA 351 (663)
Q Consensus 343 ~V~ing~~~ 351 (663)
..|+||..+
T Consensus 87 ~~~LnGt~~ 95 (684)
T PF12877_consen 87 SGFLNGTEV 95 (684)
T ss_pred ceeeccHHH
Confidence 356788653
No 112
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=33.24 E-value=18 Score=39.15 Aligned_cols=27 Identities=11% Similarity=0.051 Sum_probs=22.7
Q ss_pred cccccchhhhhhhcCCCCCCCccccCC
Q 006035 630 KARTHLSHDIQLARHYNHHGNARTAAE 656 (663)
Q Consensus 630 ~~r~~~~~eiq~atnnf~~~~~~~~~~ 656 (663)
..+.|++.|++.|||||++.+.-..++
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Gg 87 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGG 87 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCC
Confidence 688899999999999999988654443
No 113
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=32.93 E-value=22 Score=40.10 Aligned_cols=64 Identities=30% Similarity=0.326 Sum_probs=40.5
Q ss_pred CCCcCCcccCcCccccccC--CCCCCCCCCCcEEeCCCC--CCCCCCcccccCC--CCCCEEeccCCcCCcc
Q 006035 481 KLRHLQSINLSGNSIRGAI--PSSLGTIASLEVLDLSYN--FFNGSIPESLGQL--TALRRLNLNGNTLSGR 546 (663)
Q Consensus 481 ~L~~L~~L~Ls~N~l~g~i--p~~~~~L~~L~~LdLs~N--~l~g~iP~~l~~l--~~L~~L~Ls~N~lsg~ 546 (663)
+.+.+..++|++|+|...- ..--...++|+.|+|++| .+. .-.++.++ ..|++|-|.+|++.-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 3456778889999986221 111224578999999999 333 11223333 3578899999988643
No 114
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=30.29 E-value=16 Score=32.08 Aligned_cols=8 Identities=25% Similarity=1.053 Sum_probs=0.0
Q ss_pred HHHHHHhh
Q 006035 607 VWWKRRQN 614 (663)
Q Consensus 607 ~~~~rr~~ 614 (663)
||++|||.
T Consensus 44 CWYckRRS 51 (118)
T PF14991_consen 44 CWYCKRRS 51 (118)
T ss_dssp --------
T ss_pred heeeeecc
Confidence 44444443
No 115
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=30.19 E-value=1e+02 Score=40.91 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=6.5
Q ss_pred ccCCCCCCCCC
Q 006035 563 FTDNAGLCGIP 573 (663)
Q Consensus 563 l~~N~~lc~~p 573 (663)
..+|.++|.||
T Consensus 3919 p~~n~f~CnC~ 3929 (4289)
T KOG1219|consen 3919 PFYNGFLCNCP 3929 (4289)
T ss_pred ecCCCeeEeCC
Confidence 45566666654
No 116
>PRK06764 hypothetical protein; Provisional
Probab=30.12 E-value=49 Score=27.49 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=15.6
Q ss_pred ceEEEeecCCceEEEEE
Q 006035 124 NCYIINRVPKGHYNVRI 140 (663)
Q Consensus 124 ~cY~~~~~~~g~ylvRl 140 (663)
+.|++...++|+|.||.
T Consensus 74 nkyti~f~kpg~yvirv 90 (105)
T PRK06764 74 NKYTIRFSKPGKYVIRV 90 (105)
T ss_pred eeeEEEecCCccEEEEE
Confidence 68999999999999997
No 117
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=28.68 E-value=62 Score=23.95 Aligned_cols=8 Identities=13% Similarity=0.165 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 006035 604 CSMVWWKR 611 (663)
Q Consensus 604 ~~~~~~~r 611 (663)
+++.++++
T Consensus 26 ~~w~~~~~ 33 (49)
T PF05545_consen 26 VIWAYRPR 33 (49)
T ss_pred HHHHHccc
Confidence 33344333
No 118
>PF15345 TMEM51: Transmembrane protein 51
Probab=28.24 E-value=87 Score=31.38 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=12.4
Q ss_pred ceEEEEchhHHHHHHHHHHHHHHHHHHHhh
Q 006035 585 SAKIGIGFGVLGLIFLLIICSMVWWKRRQN 614 (663)
Q Consensus 585 ~~~~~i~~~~~~~~~~~~~~~~~~~~rr~~ 614 (663)
...++.+++++.++++++-+++.++.|||+
T Consensus 57 t~SVAyVLVG~Gv~LLLLSICL~IR~KRr~ 86 (233)
T PF15345_consen 57 TFSVAYVLVGSGVALLLLSICLSIRDKRRR 86 (233)
T ss_pred eEEEEEehhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333334444444433333
No 119
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=27.25 E-value=21 Score=39.73 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=0.0
Q ss_pred EEchhHHHHHHHHHHHHHH
Q 006035 589 GIGFGVLGLIFLLIICSMV 607 (663)
Q Consensus 589 ~i~~~~~~~~~~~~~~~~~ 607 (663)
+++++++++++++++++++
T Consensus 356 ~vVlgvavlivVv~viv~v 374 (439)
T PF02480_consen 356 GVVLGVAVLIVVVGVIVWV 374 (439)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHhhe
Confidence 3333444434333333333
No 120
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=26.55 E-value=1.4e+02 Score=21.76 Aligned_cols=8 Identities=25% Similarity=0.335 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q 006035 606 MVWWKRRQ 613 (663)
Q Consensus 606 ~~~~~rr~ 613 (663)
..++++|+
T Consensus 25 ~~~~~~r~ 32 (45)
T TIGR03141 25 WSLLDRRR 32 (45)
T ss_pred HHHHHHHH
Confidence 33333333
No 121
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=23.90 E-value=55 Score=35.96 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=13.1
Q ss_pred CCCCceEEEEchhHHHHHH
Q 006035 581 HLSTSAKIGIGFGVLGLIF 599 (663)
Q Consensus 581 ~~~~~~~~~i~~~~~~~~~ 599 (663)
.++.+.|.+|+|+++++|.
T Consensus 363 ~LstgaIaGIsvavvvvVg 381 (397)
T PF03302_consen 363 GLSTGAIAGISVAVVVVVG 381 (397)
T ss_pred cccccceeeeeehhHHHHH
Confidence 4567788888877766554
No 122
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=23.52 E-value=29 Score=39.15 Aligned_cols=62 Identities=27% Similarity=0.221 Sum_probs=40.0
Q ss_pred eEeEEEccCCCCcccC--CccccCCCcCCcccCcCc--cccccCCCCCCCC--CCCcEEeCCCCCCCCCC
Q 006035 460 VIDGLGLDNQGLRGFL--PNGISKLRHLQSINLSGN--SIRGAIPSSLGTI--ASLEVLDLSYNFFNGSI 523 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~--p~~~~~L~~L~~L~Ls~N--~l~g~ip~~~~~L--~~L~~LdLs~N~l~g~i 523 (663)
.|.+++|++|+|...- ..--..-+.|..|+|++| .+. -..++.++ ..|+.|-|.+|.+.-..
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccch
Confidence 4888999999986421 112223468899999999 333 12233332 34788999999887443
No 123
>PF03944 Endotoxin_C: delta endotoxin; InterPro: IPR005638 This family contains insecticidal toxins produced by Bacillus species of bacteria. During spore formation the bacteria produce crystals of this protein. When an insect ingests these proteins, they are activated by proteolytic cleavage. The N terminus is cleaved in all of the proteins and a C-terminal extension is cleaved in some members. Once activated, the endotoxin binds to the gut epithelium and causes cell lysis by the formation of cation-selective channels, which leads to death. The activated region of the delta toxin is composed of three distinct structural domains: an N-terminal helical bundle domain (IPR005639 from INTERPRO) involved in membrane insertion and pore formation; a beta-sheet central domain (IPR001178 from INTERPRO) involved in receptor binding; and a C-terminal beta-sandwich domain that interacts with the N-terminal domain to form a channel [, ]. This entry represents the conserved C-terminal domain.; PDB: 1DLC_A 1JI6_A 1W99_A 1CIY_A 1I5P_A 2C9K_A 3EB7_A.
Probab=21.55 E-value=6.3e+02 Score=23.13 Aligned_cols=80 Identities=18% Similarity=0.297 Sum_probs=43.0
Q ss_pred ecCCceEEEEEEEeCcCCCCCCCCCcEEEEECCeEEE-E--eecCCCC-------CCCceEEEEE--EEeeCCe---EEE
Q 006035 130 RVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIY-S--LKSGWSD-------HDDRAFAEAL--VFLRDGT---VSI 194 (663)
Q Consensus 130 ~~~~g~ylvRl~F~~~~y~~~~~~~~Fdv~~~~~~~~-t--v~~~~~~-------~~~~~~~E~i--~~~~~~~---l~v 194 (663)
.....+|-||+.+.. +....+.+..++.... . +....+. ..+.-+.|+. +...... +.|
T Consensus 48 ~~~~~~YrIRiRYAs------~~~~~~~i~~~~~~~~~~~~~~~T~~~~~~~~~~y~~F~y~~~~~~~~~~~~~~~~~~i 121 (143)
T PF03944_consen 48 NSSSQKYRIRIRYAS------NSNGTLSISINNSSGNLSFNFPSTMSNGDNLTLNYESFQYVEFPTPFTFSSNQSITITI 121 (143)
T ss_dssp SSSTEEEEEEEEEEE------SS-EEEEEEETTEEEECEEEE--SSSTTGGCCETGGG-EEEEESSEEEESTSEEEEEEE
T ss_pred CCCCceEEEEEEEEE------CCCcEEEEEECCccceeeeeccccccCCCccccccceeEeeecCceEEecCCCceEEEE
Confidence 345679999999873 2233677777765432 2 2222221 1123455653 2333433 566
Q ss_pred EEEeCCC-CCceEEEEEEEEcC
Q 006035 195 CFHSTGH-GDPAILSLEILQVD 215 (663)
Q Consensus 195 cf~~~~~-~~pfIsaIEl~~l~ 215 (663)
.+.+... +.=+|--||..|+.
T Consensus 122 ~i~~~~~~~~v~IDkIEFIPv~ 143 (143)
T PF03944_consen 122 SIQNISSNGNVYIDKIEFIPVN 143 (143)
T ss_dssp EEESSTTTS-EEEEEEEEEECT
T ss_pred EEEecCCCCeEEEEeEEEEeCC
Confidence 5555444 55578899999874
No 124
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=21.35 E-value=1.2e+02 Score=31.74 Aligned_cols=17 Identities=18% Similarity=0.036 Sum_probs=9.8
Q ss_pred CCCCceEEEEchhHHHH
Q 006035 581 HLSTSAKIGIGFGVLGL 597 (663)
Q Consensus 581 ~~~~~~~~~i~~~~~~~ 597 (663)
+.....+++|.+++++.
T Consensus 223 ~l~~G~VVlIslAiALG 239 (281)
T PF12768_consen 223 KLSRGFVVLISLAIALG 239 (281)
T ss_pred cccceEEEEEehHHHHH
Confidence 44555666666665544
No 125
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.12 E-value=1.1e+02 Score=24.18 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=14.8
Q ss_pred CCCceEEEEchhHHHHHHHHHHHHHH
Q 006035 582 LSTSAKIGIGFGVLGLIFLLIICSMV 607 (663)
Q Consensus 582 ~~~~~~~~i~~~~~~~~~~~~~~~~~ 607 (663)
.+.+.++.++++..++++++....+.
T Consensus 10 lnPGlIVLlvV~g~ll~flvGnyvlY 35 (69)
T PF04689_consen 10 LNPGLIVLLVVAGLLLVFLVGNYVLY 35 (69)
T ss_pred CCCCeEEeehHHHHHHHHHHHHHHHH
Confidence 34556777777666655544444433
No 126
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.05 E-value=63 Score=43.47 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=28.1
Q ss_pred cCcCccccccCCCCCCCCCCCcEEeCCCCCCC
Q 006035 489 NLSGNSIRGAIPSSLGTIASLEVLDLSYNFFN 520 (663)
Q Consensus 489 ~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~ 520 (663)
||++|+|+-.-+..|..|++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999666677889999999999999876
No 127
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=20.35 E-value=1.9e+02 Score=21.16 Aligned_cols=10 Identities=20% Similarity=0.242 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q 006035 604 CSMVWWKRRQ 613 (663)
Q Consensus 604 ~~~~~~~rr~ 613 (663)
++..++++|+
T Consensus 22 ~~~~~~~~r~ 31 (46)
T PF04995_consen 22 IVWSLRRRRR 31 (46)
T ss_pred HHHHHHHHHH
Confidence 3333444443
Done!