Query 006035
Match_columns 663
No_of_seqs 531 out of 4051
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 14:14:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006035.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006035hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.9 1.1E-26 3.6E-31 223.2 5.9 154 232-403 5-171 (174)
2 2jwp_A Malectin, MGC80075; sug 99.8 3.7E-20 1.3E-24 177.6 16.1 141 65-215 6-172 (174)
3 1ogq_A PGIP-2, polygalacturona 99.7 2.5E-17 8.4E-22 172.9 9.8 155 409-569 2-162 (313)
4 4ecn_A Leucine-rich repeat pro 99.6 3.5E-16 1.2E-20 184.8 10.2 148 411-567 267-526 (876)
5 4eco_A Uncharacterized protein 99.6 6.7E-16 2.3E-20 177.7 9.5 146 411-567 28-284 (636)
6 1w8a_A SLIT protein; signaling 99.5 1.4E-14 4.7E-19 140.8 9.7 129 443-572 8-142 (192)
7 3rgz_A Protein brassinosteroid 99.5 1.3E-14 4.3E-19 170.6 5.4 119 460-581 633-751 (768)
8 2o6r_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 132.4 10.6 129 443-572 7-140 (177)
9 2wfh_A SLIT homolog 2 protein 99.5 1E-13 3.5E-18 134.9 10.4 128 443-572 10-142 (193)
10 3rgz_A Protein brassinosteroid 99.5 6.3E-14 2.2E-18 164.7 10.1 148 409-566 8-188 (768)
11 2v70_A SLIT-2, SLIT homolog 2 99.4 1.8E-13 6.3E-18 135.8 9.3 106 461-567 34-140 (220)
12 3e6j_A Variable lymphocyte rec 99.4 7.6E-13 2.6E-17 132.1 12.4 124 444-569 20-148 (229)
13 2v9t_B SLIT homolog 2 protein 99.4 5.9E-13 2E-17 132.1 10.5 124 443-567 11-139 (220)
14 4fcg_A Uncharacterized protein 99.4 7.5E-14 2.6E-18 147.3 2.8 157 408-567 22-194 (328)
15 2v9t_B SLIT homolog 2 protein 99.4 1.4E-12 4.8E-17 129.4 11.1 112 460-572 57-168 (220)
16 2o6s_A Variable lymphocyte rec 99.4 2.3E-12 7.7E-17 126.3 11.7 126 443-569 7-137 (208)
17 3g39_A Variable lymphocyte rec 99.4 2.7E-12 9.1E-17 122.2 11.4 107 462-572 12-118 (170)
18 2v70_A SLIT-2, SLIT homolog 2 99.3 2.5E-12 8.7E-17 127.6 10.6 112 460-572 58-169 (220)
19 3e6j_A Variable lymphocyte rec 99.3 3.8E-12 1.3E-16 127.1 11.1 111 460-572 65-175 (229)
20 2o6s_A Variable lymphocyte rec 99.3 6.5E-12 2.2E-16 123.0 12.3 113 460-573 53-165 (208)
21 2r9u_A Variable lymphocyte rec 99.3 5.7E-12 1.9E-16 120.4 11.5 106 462-572 15-121 (174)
22 1ogq_A PGIP-2, polygalacturona 99.3 4.4E-13 1.5E-17 140.4 3.7 114 461-578 199-312 (313)
23 3rfs_A Internalin B, repeat mo 99.3 6.7E-12 2.3E-16 128.5 12.3 113 460-573 110-222 (272)
24 3m19_A Variable lymphocyte rec 99.3 8.8E-12 3E-16 125.9 11.7 111 460-571 84-194 (251)
25 4g8a_A TOLL-like receptor 4; l 99.3 4E-12 1.4E-16 144.8 9.5 113 460-572 470-583 (635)
26 1p9a_G Platelet glycoprotein I 99.3 1.6E-11 5.4E-16 127.1 11.5 111 460-572 101-211 (290)
27 2je0_A Acidic leucine-rich nuc 99.2 1.1E-11 3.9E-16 114.5 7.5 105 460-567 18-124 (149)
28 4fcg_A Uncharacterized protein 99.2 1.8E-11 6.2E-16 129.0 9.7 110 461-573 185-294 (328)
29 2o6q_A Variable lymphocyte rec 99.2 3.9E-11 1.3E-15 122.6 11.8 112 460-572 110-221 (270)
30 2ifg_A High affinity nerve gro 99.2 1.8E-11 6.3E-16 129.5 9.6 104 465-572 14-119 (347)
31 3m19_A Variable lymphocyte rec 99.2 4.5E-11 1.6E-15 120.7 11.6 107 461-568 61-167 (251)
32 3v47_A TOLL-like receptor 5B a 99.2 2E-11 6.9E-16 133.8 9.7 113 460-573 300-412 (455)
33 1w8a_A SLIT protein; signaling 99.2 2.4E-11 8.2E-16 117.8 8.9 90 460-549 55-144 (192)
34 3g39_A Variable lymphocyte rec 99.2 2.9E-11 9.8E-16 115.0 8.9 106 443-548 9-119 (170)
35 1ozn_A Reticulon 4 receptor; N 99.2 2.6E-11 8.8E-16 124.7 8.8 112 460-572 130-241 (285)
36 2z66_A Variable lymphocyte rec 99.2 2.3E-11 7.9E-16 126.3 8.2 113 460-572 151-264 (306)
37 2z81_A CD282 antigen, TOLL-lik 99.2 3.7E-11 1.3E-15 135.0 9.4 126 443-570 4-137 (549)
38 2xot_A Amphoterin-induced prot 99.2 4.8E-11 1.6E-15 127.4 9.6 126 443-569 18-149 (361)
39 2o6q_A Variable lymphocyte rec 99.2 1E-10 3.5E-15 119.4 11.6 133 432-566 6-143 (270)
40 2ell_A Acidic leucine-rich nuc 99.2 3.7E-11 1.3E-15 113.4 7.2 103 461-567 26-131 (168)
41 3vq2_A TLR4, TOLL-like recepto 99.2 3.9E-11 1.3E-15 136.6 8.7 113 460-573 449-562 (606)
42 4g8a_A TOLL-like receptor 4; l 99.1 5.4E-11 1.9E-15 135.3 9.7 108 460-568 53-160 (635)
43 3rfs_A Internalin B, repeat mo 99.1 1.4E-10 4.8E-15 118.6 11.5 109 460-569 86-194 (272)
44 1dce_A Protein (RAB geranylger 99.1 8.6E-11 3E-15 133.0 10.1 102 461-568 443-545 (567)
45 2xot_A Amphoterin-induced prot 99.1 1.2E-10 4.3E-15 124.1 10.2 106 461-567 66-174 (361)
46 2z63_A TOLL-like receptor 4, v 99.1 1.1E-10 3.7E-15 131.7 10.2 113 460-573 422-535 (570)
47 2id5_A Lingo-1, leucine rich r 99.1 2.4E-10 8.1E-15 126.3 11.8 123 444-567 12-139 (477)
48 1p9a_G Platelet glycoprotein I 99.1 2.8E-10 9.5E-15 117.7 11.5 108 460-569 78-185 (290)
49 2z62_A TOLL-like receptor 4, v 99.1 1.7E-10 5.8E-15 117.9 9.5 106 461-567 54-160 (276)
50 1ozn_A Reticulon 4 receptor; N 99.1 3.3E-10 1.1E-14 116.3 11.2 106 461-567 58-164 (285)
51 3zyj_A Leucine-rich repeat-con 99.1 1.7E-10 5.8E-15 126.4 9.5 110 460-572 186-295 (440)
52 2z62_A TOLL-like receptor 4, v 99.1 3.6E-10 1.2E-14 115.5 11.3 108 460-568 77-189 (276)
53 3zyi_A Leucine-rich repeat-con 99.1 1.4E-10 4.7E-15 127.6 8.7 110 460-572 197-306 (452)
54 4b8c_D Glucose-repressible alc 99.1 1.5E-10 5.3E-15 134.9 9.4 103 461-568 226-328 (727)
55 3j0a_A TOLL-like receptor 5; m 99.1 5.2E-11 1.8E-15 141.4 5.2 107 460-572 452-563 (844)
56 2z80_A TOLL-like receptor 2, v 99.1 1.9E-10 6.5E-15 122.0 9.0 109 460-569 53-162 (353)
57 3v47_A TOLL-like receptor 5B a 99.1 2.3E-10 7.8E-15 125.4 9.5 109 460-569 276-384 (455)
58 2r9u_A Variable lymphocyte rec 99.1 2.9E-10 1E-14 108.4 8.9 87 460-546 34-120 (174)
59 3zyi_A Leucine-rich repeat-con 99.1 3.8E-10 1.3E-14 124.0 10.8 120 445-565 56-180 (452)
60 2je0_A Acidic leucine-rich nuc 99.0 7.7E-11 2.6E-15 108.9 4.3 103 460-565 43-149 (149)
61 2z66_A Variable lymphocyte rec 99.0 4.5E-10 1.5E-14 116.5 10.6 111 460-571 127-238 (306)
62 3vq2_A TLR4, TOLL-like recepto 99.0 5.4E-10 1.9E-14 127.1 11.6 105 461-566 58-163 (606)
63 4ezg_A Putative uncharacterize 99.0 2.7E-10 9.1E-15 110.6 7.6 103 461-567 68-170 (197)
64 3t6q_A CD180 antigen; protein- 99.0 2.3E-10 7.8E-15 130.2 8.2 111 460-572 450-563 (606)
65 2ell_A Acidic leucine-rich nuc 99.0 1.7E-10 5.7E-15 108.9 5.7 106 460-568 50-159 (168)
66 2ifg_A High affinity nerve gro 99.0 3.7E-10 1.3E-14 119.4 8.9 103 443-546 8-118 (347)
67 3t6q_A CD180 antigen; protein- 99.0 5.5E-10 1.9E-14 127.0 10.9 109 460-569 34-142 (606)
68 2wfh_A SLIT homolog 2 protein 99.0 8.9E-10 3E-14 106.8 10.3 103 462-569 13-115 (193)
69 2id5_A Lingo-1, leucine rich r 99.0 2.7E-10 9.2E-15 125.8 7.4 112 460-572 225-336 (477)
70 4eco_A Uncharacterized protein 99.0 1.6E-10 5.5E-15 132.8 5.5 108 460-569 207-343 (636)
71 1a9n_A U2A', U2A'; complex (nu 99.0 3.3E-10 1.1E-14 107.9 6.0 101 461-567 21-124 (176)
72 1wwl_A Monocyte differentiatio 99.0 1.4E-10 4.9E-15 121.0 3.6 110 460-570 122-242 (312)
73 3oja_B Anopheles plasmodium-re 99.0 1E-09 3.5E-14 125.0 11.0 104 460-567 100-203 (597)
74 2xwt_C Thyrotropin receptor; s 99.0 2.8E-10 9.5E-15 113.8 5.5 109 460-571 32-145 (239)
75 1a9n_A U2A', U2A'; complex (nu 99.0 7.1E-10 2.4E-14 105.6 8.0 103 460-567 43-151 (176)
76 3zyj_A Leucine-rich repeat-con 99.0 1.1E-09 3.7E-14 119.9 10.4 122 444-566 44-170 (440)
77 2z7x_B TOLL-like receptor 1, v 99.0 4.6E-10 1.6E-14 125.3 7.5 103 461-567 23-126 (520)
78 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 1E-09 3.5E-14 124.0 10.0 105 460-568 53-158 (562)
79 1ziw_A TOLL-like receptor 3; i 99.0 1.4E-09 4.6E-14 125.6 11.2 114 460-573 505-626 (680)
80 2ft3_A Biglycan; proteoglycan, 99.0 1.3E-09 4.5E-14 114.5 10.0 122 443-568 33-159 (332)
81 4ezg_A Putative uncharacterize 99.0 7.7E-10 2.6E-14 107.4 7.5 104 460-567 89-192 (197)
82 3o6n_A APL1; leucine-rich repe 99.0 1.6E-09 5.5E-14 116.4 10.7 104 460-567 94-197 (390)
83 1ziw_A TOLL-like receptor 3; i 99.0 1.3E-09 4.3E-14 125.9 10.5 105 461-566 27-131 (680)
84 1dce_A Protein (RAB geranylger 99.0 9.3E-10 3.2E-14 124.6 9.1 101 460-563 464-567 (567)
85 1xku_A Decorin; proteoglycan, 99.0 1.9E-09 6.6E-14 113.0 10.8 121 443-567 31-156 (330)
86 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 1.1E-09 3.9E-14 123.6 9.4 107 461-571 405-512 (562)
87 4ecn_A Leucine-rich repeat pro 98.9 3.5E-10 1.2E-14 133.7 5.0 108 460-569 449-586 (876)
88 3j0a_A TOLL-like receptor 5; m 98.9 1.2E-09 4.2E-14 129.5 9.7 106 461-567 50-159 (844)
89 4b8c_D Glucose-repressible alc 98.9 1.4E-10 4.8E-15 135.2 1.5 91 460-553 248-338 (727)
90 2z7x_B TOLL-like receptor 1, v 98.9 1.4E-09 4.7E-14 121.4 9.4 103 461-567 350-455 (520)
91 2o6r_A Variable lymphocyte rec 98.9 1.3E-09 4.5E-14 103.6 7.9 89 460-548 53-141 (177)
92 3oja_A Leucine-rich immune mol 98.9 8E-10 2.7E-14 122.8 7.1 107 460-571 145-252 (487)
93 2z63_A TOLL-like receptor 4, v 98.9 2.6E-09 9E-14 120.2 11.4 105 461-566 54-159 (570)
94 2ft3_A Biglycan; proteoglycan, 98.9 1.4E-09 4.8E-14 114.2 8.1 110 460-570 194-308 (332)
95 1xku_A Decorin; proteoglycan, 98.9 2.4E-09 8.3E-14 112.3 9.9 110 460-570 193-307 (330)
96 3oja_B Anopheles plasmodium-re 98.9 2.1E-09 7.3E-14 122.4 10.0 107 461-568 77-183 (597)
97 1wwl_A Monocyte differentiatio 98.9 4.7E-10 1.6E-14 117.1 3.9 110 460-569 150-266 (312)
98 4glp_A Monocyte differentiatio 98.9 1.7E-09 5.8E-14 112.6 6.0 110 460-570 118-238 (310)
99 3o53_A Protein LRIM1, AGAP0063 98.9 2.3E-09 7.9E-14 112.0 7.0 107 460-571 145-252 (317)
100 2z81_A CD282 antigen, TOLL-lik 98.8 1.6E-09 5.5E-14 121.6 5.8 106 461-567 52-159 (549)
101 3oja_A Leucine-rich immune mol 98.8 3.1E-09 1.1E-13 118.0 7.4 106 460-569 121-227 (487)
102 3o6n_A APL1; leucine-rich repe 98.8 5.5E-09 1.9E-13 112.2 8.2 108 460-568 70-177 (390)
103 4glp_A Monocyte differentiatio 98.8 1.6E-09 5.6E-14 112.8 3.9 104 460-568 170-284 (310)
104 2xwt_C Thyrotropin receptor; s 98.8 3.2E-09 1.1E-13 106.1 5.8 104 461-567 57-167 (239)
105 2z80_A TOLL-like receptor 2, v 98.8 4.2E-09 1.4E-13 111.6 6.0 105 461-567 78-185 (353)
106 3o53_A Protein LRIM1, AGAP0063 98.7 9.8E-09 3.4E-13 107.2 7.2 105 461-569 122-227 (317)
107 3cvr_A Invasion plasmid antige 98.7 7.7E-09 2.6E-13 116.8 6.5 90 461-567 82-171 (571)
108 1h6t_A Internalin B; cell adhe 98.7 1.9E-08 6.4E-13 104.0 8.1 99 461-568 114-212 (291)
109 1xeu_A Internalin C; cellular 98.7 4.9E-08 1.7E-12 99.3 10.2 99 460-568 64-162 (263)
110 1h6t_A Internalin B; cell adhe 98.7 4.6E-08 1.6E-12 101.0 9.8 98 461-567 92-189 (291)
111 4fmz_A Internalin; leucine ric 98.7 2.1E-08 7.3E-13 105.6 7.4 100 461-567 245-344 (347)
112 1h6u_A Internalin H; cell adhe 98.7 4.1E-08 1.4E-12 102.2 9.2 99 461-568 131-229 (308)
113 1h6u_A Internalin H; cell adhe 98.6 6.2E-08 2.1E-12 100.8 9.8 98 461-567 87-184 (308)
114 1m9s_A Internalin B; cell inva 98.6 4.1E-08 1.4E-12 111.8 9.1 99 460-567 110-208 (605)
115 1m9s_A Internalin B; cell inva 98.6 5.6E-08 1.9E-12 110.7 9.8 99 460-567 88-186 (605)
116 3cvr_A Invasion plasmid antige 98.6 5.8E-08 2E-12 109.6 9.4 94 461-568 142-242 (571)
117 4fmz_A Internalin; leucine ric 98.6 7.6E-08 2.6E-12 101.3 9.1 104 460-570 222-325 (347)
118 1xeu_A Internalin C; cellular 98.6 1.1E-07 3.8E-12 96.6 9.8 99 460-568 42-140 (263)
119 1ds9_A Outer arm dynein; leuci 98.6 4.5E-10 1.5E-14 109.1 -7.7 103 460-569 49-153 (198)
120 3bz5_A Internalin-J, INLJ; leu 98.6 1.2E-07 4E-12 104.5 10.4 98 460-570 65-162 (457)
121 4ay9_X Follicle-stimulating ho 98.6 3.7E-08 1.3E-12 104.4 5.7 106 443-548 9-121 (350)
122 1ds9_A Outer arm dynein; leuci 98.6 6.9E-10 2.3E-14 107.8 -7.3 102 461-568 20-127 (198)
123 1o6v_A Internalin A; bacterial 98.6 6.8E-08 2.3E-12 106.4 7.5 102 460-570 288-389 (466)
124 2ca6_A RAN GTPase-activating p 98.6 9.4E-09 3.2E-13 110.3 0.5 110 460-569 188-316 (386)
125 1o6v_A Internalin A; bacterial 98.5 1.6E-07 5.4E-12 103.4 9.5 99 461-568 267-365 (466)
126 2ast_B S-phase kinase-associat 98.5 2.2E-08 7.4E-13 104.9 1.8 104 461-566 72-178 (336)
127 2ast_B S-phase kinase-associat 98.5 8.9E-09 3.1E-13 107.9 -1.4 84 461-544 95-182 (336)
128 3goz_A Leucine-rich repeat-con 98.5 2.8E-08 9.5E-13 105.8 0.9 109 460-568 52-179 (362)
129 1jl5_A Outer protein YOPM; leu 98.4 6.3E-07 2.2E-11 98.5 11.7 94 461-567 155-248 (454)
130 3bz5_A Internalin-J, INLJ; leu 98.4 5.7E-07 1.9E-11 99.0 10.7 80 460-548 171-250 (457)
131 1jl5_A Outer protein YOPM; leu 98.4 5.8E-08 2E-12 106.8 2.6 84 460-549 12-108 (454)
132 3g06_A SSPH2 (leucine-rich rep 98.4 5.6E-07 1.9E-11 102.7 10.7 95 461-569 203-297 (622)
133 3goz_A Leucine-rich repeat-con 98.4 7.1E-08 2.4E-12 102.6 1.4 110 460-569 23-151 (362)
134 2ca6_A RAN GTPase-activating p 98.4 4.6E-08 1.6E-12 104.9 -0.1 109 460-568 61-199 (386)
135 3rw6_A Nuclear RNA export fact 98.2 2E-07 6.7E-12 94.9 0.9 81 480-562 167-257 (267)
136 4ay9_X Follicle-stimulating ho 98.2 1E-06 3.5E-11 93.2 6.1 102 463-568 13-116 (350)
137 3g06_A SSPH2 (leucine-rich rep 98.2 1.6E-06 5.4E-11 99.0 6.6 85 460-553 222-306 (622)
138 1z7x_W Ribonuclease inhibitor; 98.0 2.6E-07 8.8E-12 101.0 -3.5 83 484-567 314-409 (461)
139 1z7x_W Ribonuclease inhibitor; 97.9 3.9E-07 1.3E-11 99.6 -3.8 108 460-567 257-381 (461)
140 3rw6_A Nuclear RNA export fact 97.8 5.4E-06 1.9E-10 84.2 2.6 76 460-537 171-257 (267)
141 3un9_A NLR family member X1; l 97.8 2.1E-06 7.1E-11 91.8 -0.8 109 460-568 127-251 (372)
142 3sb4_A Hypothetical leucine ri 97.6 6.3E-05 2.1E-09 78.5 6.9 99 461-562 228-327 (329)
143 3un9_A NLR family member X1; l 97.6 5.2E-06 1.8E-10 88.7 -2.2 108 460-568 102-223 (372)
144 3ogk_B Coronatine-insensitive 97.5 7.7E-06 2.6E-10 92.3 -2.7 107 461-567 405-524 (592)
145 1io0_A Tropomodulin; LRR prote 97.4 1.5E-05 5.3E-10 76.2 -0.9 107 461-567 38-162 (185)
146 3sb4_A Hypothetical leucine ri 97.3 0.00026 8.7E-09 73.8 6.4 35 461-496 103-137 (329)
147 2p1m_B Transport inhibitor res 97.1 2.3E-05 7.9E-10 88.3 -4.3 38 506-543 455-493 (594)
148 2p1m_B Transport inhibitor res 97.0 7.4E-05 2.5E-09 84.1 -0.8 83 481-566 154-245 (594)
149 3ogk_B Coronatine-insensitive 96.9 0.00035 1.2E-08 78.6 3.4 102 461-564 194-326 (592)
150 3rfe_A Platelet glycoprotein I 96.8 0.0021 7.1E-08 57.6 6.9 59 511-572 12-71 (130)
151 1io0_A Tropomodulin; LRR prote 96.5 0.0002 7E-09 68.3 -2.1 85 460-544 66-164 (185)
152 2ra8_A Uncharacterized protein 96.1 0.00064 2.2E-08 72.1 -1.2 40 506-545 251-293 (362)
153 3rfe_A Platelet glycoprotein I 95.9 0.01 3.6E-07 53.0 6.0 37 508-544 32-68 (130)
154 3e4g_A ATP synthase subunit S, 95.8 0.001 3.5E-08 62.9 -1.1 83 460-542 62-150 (176)
155 4fdw_A Leucine rich hypothetic 95.6 0.015 5.2E-07 62.3 6.9 102 461-567 250-356 (401)
156 4fdw_A Leucine rich hypothetic 95.0 0.036 1.2E-06 59.3 7.6 81 461-544 273-358 (401)
157 3e4g_A ATP synthase subunit S, 94.8 0.0066 2.3E-07 57.2 1.0 87 483-570 61-153 (176)
158 2ra8_A Uncharacterized protein 94.8 0.0087 3E-07 63.3 1.7 104 460-567 173-290 (362)
159 1pgv_A TMD-1, tropomodulin TMD 91.8 0.036 1.2E-06 53.1 0.5 81 461-541 43-136 (197)
160 2ks1_B Epidermal growth factor 89.9 0.057 1.9E-06 38.2 -0.1 17 598-614 24-40 (44)
161 1pgv_A TMD-1, tropomodulin TMD 89.4 0.11 3.9E-06 49.6 1.6 88 480-567 38-137 (197)
162 4gt6_A Cell surface protein; l 88.5 1.4 4.8E-05 46.4 9.5 86 477-566 282-367 (394)
163 4h09_A Hypothetical leucine ri 88.4 0.66 2.2E-05 48.5 6.8 78 461-540 242-319 (379)
164 2l2t_A Receptor tyrosine-prote 86.3 0.2 7E-06 35.3 0.9 18 598-615 23-40 (44)
165 4fs7_A Uncharacterized protein 85.1 1.1 3.7E-05 47.3 6.3 59 478-538 315-373 (394)
166 4fs7_A Uncharacterized protein 84.4 1.1 3.7E-05 47.3 5.9 85 478-566 292-376 (394)
167 2jwa_A Receptor tyrosine-prote 84.1 0.14 4.9E-06 36.0 -0.8 18 598-615 24-41 (44)
168 4gt6_A Cell surface protein; l 82.5 2.1 7.3E-05 45.0 7.2 80 461-543 290-369 (394)
169 2w3j_A Carbohydrate binding mo 78.5 36 0.0012 30.2 13.4 90 121-216 38-131 (145)
170 2vzp_A Aocbm35, EXO-beta-D-glu 77.7 7.2 0.00025 33.8 7.9 72 308-387 40-113 (127)
171 4h09_A Hypothetical leucine ri 76.3 4.9 0.00017 41.7 7.6 93 471-566 228-320 (379)
172 2w47_A Lipolytic enzyme, G-D-S 76.2 7.9 0.00027 34.5 7.9 85 308-400 41-128 (144)
173 2k1k_A Ephrin type-A receptor 75.9 0.41 1.4E-05 32.7 -0.6 29 583-611 9-37 (38)
174 2w47_A Lipolytic enzyme, G-D-S 70.6 55 0.0019 28.8 14.6 90 121-216 39-133 (144)
175 2wz8_A Cellulosome protein doc 70.1 62 0.0021 29.1 13.0 90 124-215 49-150 (156)
176 2w3j_A Carbohydrate binding mo 69.5 14 0.00048 33.0 7.9 71 308-387 40-112 (145)
177 2o14_A Hypothetical protein YX 65.9 43 0.0015 34.8 12.0 79 124-216 78-157 (375)
178 2vzp_A Aocbm35, EXO-beta-D-glu 63.7 69 0.0024 27.3 12.7 87 120-211 37-127 (127)
179 2w87_A Esterase D, XYL-CBM35; 63.4 18 0.00061 32.0 7.3 72 308-387 40-114 (139)
180 2w87_A Esterase D, XYL-CBM35; 56.5 1E+02 0.0035 26.9 11.9 87 121-213 38-130 (139)
181 2wz8_A Cellulosome protein doc 52.2 61 0.0021 29.2 8.9 79 308-388 48-132 (156)
182 2knc_B Integrin beta-3; transm 32.6 20 0.0007 28.5 2.0 17 592-608 15-31 (79)
183 2ks1_B Epidermal growth factor 29.9 24 0.00083 24.7 1.7 28 590-617 13-40 (44)
184 1iij_A ERBB-2 receptor protein 29.2 10 0.00036 25.2 -0.2 7 606-612 28-34 (35)
185 2bgo_A Endo-B1,4-mannanase 5C; 27.4 3.2E+02 0.011 24.0 11.2 89 121-217 35-125 (140)
186 2knc_B Integrin beta-3; transm 25.4 66 0.0022 25.5 3.8 30 577-606 3-32 (79)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.93 E-value=1.1e-26 Score=223.22 Aligned_cols=154 Identities=18% Similarity=0.202 Sum_probs=114.1
Q ss_pred EEEEeeccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCccccccccceecCCCCCCCChHHHHhhccccCCCCCceEE
Q 006035 232 RTATRLSCGNGKPKFDVDYSGDHWGGDRFWNPILSFGQNADQRRSTESSIKQASKAPNFYPEALYQTALVSTDSQPDLQY 311 (663)
Q Consensus 232 ~~~~RiN~Gg~~~~~~~~~~~D~~~~DR~W~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~TAr~~~~~~~nlt~ 311 (663)
|++|||||||+... | . .+|.|.+|..+...+... .....+.. .....+|..||||||.+.. +++|
T Consensus 5 ~~~~~INcGg~~~~---d----~--~gr~w~~D~~~~~~g~~~-~~~~~~~~--~~~~~~~~~lY~TaR~~~~---~~tY 69 (174)
T 2jwp_A 5 KVIWAVNAGGESHV---D----V--HGIHYRKDPLEGRVGRAS-DYGMKLPI--LRSNPEDQVLYQTERYNED---SFGY 69 (174)
T ss_dssp HEEEEEEETSSSEE---E----T--TTEEECSSCSSTTCCCCC-CCCTTSCC--SSSCHHHHHTTTCCCCCCS---CEEE
T ss_pred cEEEEEECCCCCcc---C----C--CCCEEcCCcCcccCCccc-ccccceEe--cccCCCCchhhhhhccCCC---CeEE
Confidence 67999999998642 2 2 278888876432111110 00111111 1123468899999999764 4999
Q ss_pred EEecCCCCcEEEEEEEeeccCCCCCcceEEEEEEECCeecccCCccccccCCceEEEEEEEEEe-------------ecC
Q 006035 312 TMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVA-------------VNG 378 (663)
Q Consensus 312 ~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~v~-------------~~~ 378 (663)
.|+++++|+|+|||||||+.. .+.++|+|||+|||++++++|||..++|+ ..++++++.+. +.+
T Consensus 70 ~f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~-~~~~~~~~~~~v~~~~l~i~~~~~~~~ 146 (174)
T 2jwp_A 70 DIPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGH-STAHDEIIPISIKKGKLSVQGEVSTFT 146 (174)
T ss_dssp EEECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSS-SSCEEEEEEEEEETTEEEETTEEEECC
T ss_pred EEEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCC-CeeEEEEEEEEEecCceeeeeeecccC
Confidence 999999999999999999975 45799999999999999999999998876 45666766654 356
Q ss_pred eeEEEEEccCCCCHHHHHHHhhhhh
Q 006035 379 RTLTVTLHPKGGSHAIINAIEVFEI 403 (663)
Q Consensus 379 ~~l~i~~~p~~~s~piLNaiEi~~~ 403 (663)
++|+|+|.|.....|+||||||++.
T Consensus 147 g~L~I~f~p~~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 147 GKLSVEFVKGYYDNPKVCALFIMKG 171 (174)
T ss_dssp SEEEEEEECSSSCSSSEEEEEEESS
T ss_pred CeEEEEEeccCCCCcEEEEEEEEeC
Confidence 7899999987666799999999874
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.83 E-value=3.7e-20 Score=177.59 Aligned_cols=141 Identities=17% Similarity=0.163 Sum_probs=106.1
Q ss_pred CcEEEccCCCCCCcCCCCCceeeccCCcc-CCcccccc-C---C--C-CCCCCcceeeeccCCCCCCceEEEeecCCceE
Q 006035 65 FAMRISCGARQNIHSPPTNTLWFKDFAYT-GGIPANAT-R---P--S-FITPPLKTLRYFPLSEGPENCYIINRVPKGHY 136 (663)
Q Consensus 65 ~~~~IdCG~~~~~~~d~~g~~w~~D~~~~-~g~~~~~~-~---~--~-~~~~~y~t~R~F~~~~g~~~cY~~~~~~~g~y 136 (663)
..++||||++.. +|..||+|.+|..|. .|...... . . . .+..+|+|+|+|+. ..+|.||+.++|+|
T Consensus 6 ~~~~INcGg~~~--~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y 79 (174)
T 2jwp_A 6 VIWAVNAGGESH--VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEY 79 (174)
T ss_dssp EEEEEEETSSSE--EETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEE
T ss_pred EEEEEECCCCCc--cCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEE
Confidence 358999998764 356899999998764 23221111 0 0 0 12247999999984 68999999888999
Q ss_pred EEEEEEeCcCCCCCCCCCcEEEEECCeEEEEeecCCCC-----CCCceEEEEEEEe-------------eCCeEEEEEEe
Q 006035 137 NVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSD-----HDDRAFAEALVFL-------------RDGTVSICFHS 198 (663)
Q Consensus 137 lvRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~-----~~~~~~~E~i~~~-------------~~~~l~vcf~~ 198 (663)
+|||||.+..+.. ...+.|||+++| .+++.+|+. ...++.||+.+.+ .++.|.|+|.|
T Consensus 80 ~VrLhF~ei~~~~-~~~rvFdV~ing---~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p 155 (174)
T 2jwp_A 80 VLVLKFAEVYFAQ-SQQKVFDVRVNG---HTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVK 155 (174)
T ss_dssp EEEEEEECCSCCC-SSSSCEEEEETT---EEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEEC
T ss_pred EEEEEEeccccCC-CCCeEeEEEECC---EEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEec
Confidence 9999999987764 467789999999 677777653 2347888888764 56789999998
Q ss_pred CCCCCceEEEEEEEEcC
Q 006035 199 TGHGDPAILSLEILQVD 215 (663)
Q Consensus 199 ~~~~~pfIsaIEl~~l~ 215 (663)
.....||||||||++.+
T Consensus 156 ~~~~~a~inaIEI~~~~ 172 (174)
T 2jwp_A 156 GYYDNPKVCALFIMKGT 172 (174)
T ss_dssp SSSCSSSEEEEEEESSC
T ss_pred cCCCCcEEEEEEEEeCc
Confidence 65678999999999654
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=2.5e-17 Score=172.86 Aligned_cols=155 Identities=26% Similarity=0.493 Sum_probs=129.9
Q ss_pred cCchHHHHHHHHhhhcCCCCC-CCCCCC--CCCCCCCCCCCCcccccCCCCccceEeEEEccCCCCcc--cCCccccCCC
Q 006035 409 KTLPEEVRALQVLKNSLDLPH-RFGWNG--DPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRG--FLPNGISKLR 483 (663)
Q Consensus 409 ~~~~~d~~aL~~~k~~~~~~~-~~~W~~--~pC~p~~~~w~gv~C~~~~~~~~~~l~~L~Ls~n~l~g--~~p~~~~~L~ 483 (663)
.+.+.|..||++||.++.++. ..+|.. ++|. +.|.||+|.... ...+|+.|+|++|++.| .+|..|.+++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~---~~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~~~~~~~l~~l~ 76 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN---RTWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSSLANLP 76 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT---TCSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc---CCCcceEeCCCC--CCceEEEEECCCCCccCCcccChhHhCCC
Confidence 367789999999999987663 247863 4553 359999997432 11369999999999999 8999999999
Q ss_pred cCCcccCcC-ccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEe
Q 006035 484 HLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFN 562 (663)
Q Consensus 484 ~L~~L~Ls~-N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~ 562 (663)
+|+.|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..+.++++|++|+|++|++++.+|..+.. +.+|+.|+
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~ 155 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGIT 155 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEE
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc-CCCCCeEE
Confidence 999999995 9999999999999999999999999999899999999999999999999999888888876 78889999
Q ss_pred ccCCCCC
Q 006035 563 FTDNAGL 569 (663)
Q Consensus 563 l~~N~~l 569 (663)
+++|...
T Consensus 156 L~~N~l~ 162 (313)
T 1ogq_A 156 FDGNRIS 162 (313)
T ss_dssp CCSSCCE
T ss_pred CcCCccc
Confidence 9888743
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=3.5e-16 Score=184.85 Aligned_cols=148 Identities=21% Similarity=0.328 Sum_probs=125.5
Q ss_pred chHHHHHHHHhhhcCCCCCCCCCCCCC----CCCCCCCC------------CCcccccCCCCccceEeEEEccCCCCccc
Q 006035 411 LPEEVRALQVLKNSLDLPHRFGWNGDP----CVPQQHPW------------SGADCQFDRTSHKWVIDGLGLDNQGLRGF 474 (663)
Q Consensus 411 ~~~d~~aL~~~k~~~~~~~~~~W~~~p----C~p~~~~w------------~gv~C~~~~~~~~~~l~~L~Ls~n~l~g~ 474 (663)
...|+.||++||.++.++ +|+.+. +.|..|.| .||+|+.. .+|+.|+|++|+|.|.
T Consensus 267 ~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDGK---NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAKGR 338 (876)
T ss_dssp HHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCEEE
T ss_pred chHHHHHHHHHHHHcCCC---CCCcCCCcccccCCccccccccccccccCcCceEecCC-----CCEEEEECccCCCCCc
Confidence 456899999999999876 675322 22223689 99999742 3699999999999999
Q ss_pred CCccccCCCcCCcccC-cCcccccc-------------------------------------------------------
Q 006035 475 LPNGISKLRHLQSINL-SGNSIRGA------------------------------------------------------- 498 (663)
Q Consensus 475 ~p~~~~~L~~L~~L~L-s~N~l~g~------------------------------------------------------- 498 (663)
+|+.|++|++|+.|+| ++|.++|.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 88776655
Q ss_pred ---------------------CCCCCCCCCCCcEEeCCCCCCCC-----------------CCccccc--CCCCCCEEec
Q 006035 499 ---------------------IPSSLGTIASLEVLDLSYNFFNG-----------------SIPESLG--QLTALRRLNL 538 (663)
Q Consensus 499 ---------------------ip~~~~~L~~L~~LdLs~N~l~g-----------------~iP~~l~--~l~~L~~L~L 538 (663)
||..|++|++|+.|+|++|+|+| .+|+.++ ++++|+.|+|
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 78889999999999999999998 3899988 9999999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
++|++.|.+|..+.. +.+|+.|++++|.
T Consensus 499 s~N~l~~~iP~~l~~-L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYD-LPELQSLNIACNR 526 (876)
T ss_dssp ESCTTCCSCCGGGGG-CSSCCEEECTTCT
T ss_pred cCCCCCccChHHHhC-CCCCCEEECcCCC
Confidence 999999999988876 7888999999887
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=6.7e-16 Score=177.67 Aligned_cols=146 Identities=20% Similarity=0.301 Sum_probs=117.2
Q ss_pred chHHHHHHHHhhhcCCCCCCC----------CCCCC-CCCCCCCCC---CCcccccCCCCccceEeEEEccCCCCcccCC
Q 006035 411 LPEEVRALQVLKNSLDLPHRF----------GWNGD-PCVPQQHPW---SGADCQFDRTSHKWVIDGLGLDNQGLRGFLP 476 (663)
Q Consensus 411 ~~~d~~aL~~~k~~~~~~~~~----------~W~~~-pC~p~~~~w---~gv~C~~~~~~~~~~l~~L~Ls~n~l~g~~p 476 (663)
...|+.||.+++.++..+.|. +|+.+ +| |.| .||+|+.. .+|+.|+|+++++.|.+|
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~lp 98 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGRVP 98 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc----ccccCCCCeEEcCC-----CCEEEEEecCcccCCcCC
Confidence 346889999999887655432 68632 23 369 99999643 369999999999999999
Q ss_pred ccccCCCcCCcccCcCc---------------------------------------------------------------
Q 006035 477 NGISKLRHLQSINLSGN--------------------------------------------------------------- 493 (663)
Q Consensus 477 ~~~~~L~~L~~L~Ls~N--------------------------------------------------------------- 493 (663)
+.+++|++|+.|+|++|
T Consensus 99 ~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 178 (636)
T 4eco_A 99 DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKS 178 (636)
T ss_dssp GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCC
T ss_pred hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccc
Confidence 99999999999999888
Q ss_pred ---------------cccccCCCCCCCCCCCcEEeCCCCCCCCC-----------------Cccccc--CCCCCCEEecc
Q 006035 494 ---------------SIRGAIPSSLGTIASLEVLDLSYNFFNGS-----------------IPESLG--QLTALRRLNLN 539 (663)
Q Consensus 494 ---------------~l~g~ip~~~~~L~~L~~LdLs~N~l~g~-----------------iP~~l~--~l~~L~~L~Ls 539 (663)
+++| ||..++++++|+.|+|++|+++|. +|+.++ ++++|++|+|+
T Consensus 179 ~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred cccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 4445 788888888888888888888875 888888 88888888888
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+|++.|.+|..+.. +.+|+.|++++|.
T Consensus 258 ~n~l~~~~p~~l~~-l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 258 NCPNLTKLPTFLKA-LPEMQLINVACNR 284 (636)
T ss_dssp CCTTCSSCCTTTTT-CSSCCEEECTTCT
T ss_pred CCcCCccChHHHhc-CCCCCEEECcCCC
Confidence 88888888887766 6778888888776
No 6
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.53 E-value=1.4e-14 Score=140.83 Aligned_cols=129 Identities=22% Similarity=0.262 Sum_probs=112.9
Q ss_pred CCCCCcccccCCCC-----ccceEeEEEccCCCCcccCCc-cccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCC
Q 006035 443 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 516 (663)
Q Consensus 443 ~~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~-~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~ 516 (663)
|.|..+.|+..... ....++.|+|++|.|.+..+. .|..+++|+.|+|++|++++..|..|.++++|+.|+|++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 57888888743221 112588999999999988775 489999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 517 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 517 N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
|++++..|..+.++++|+.|+|++|++++.+|..+.. +.+|+.|++++|++.|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc-CCCCCEEEeCCCCccCcC
Confidence 9999988888999999999999999999988887766 788999999999988864
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.48 E-value=1.3e-14 Score=170.65 Aligned_cols=119 Identities=34% Similarity=0.627 Sum_probs=107.8
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|+++|.+|..|++|+.|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+.++++|+.|+|+
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCCCCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPH 581 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~p~~~~c~~~ 581 (663)
+|+++|.||..- .+..+....+.+|+.+||.|- ..|...
T Consensus 713 ~N~l~g~iP~~~--~~~~~~~~~~~gN~~Lcg~~l-~~C~~~ 751 (768)
T 3rgz_A 713 NNNLSGPIPEMG--QFETFPPAKFLNNPGLCGYPL-PRCDPS 751 (768)
T ss_dssp SSEEEEECCSSS--SGGGSCGGGGCSCTEEESTTS-CCCCSC
T ss_pred CCcccccCCCch--hhccCCHHHhcCCchhcCCCC-cCCCCC
Confidence 999999999752 133455667889999999874 488753
No 8
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=1.1e-13 Score=132.37 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=109.0
Q ss_pred CCCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCC
Q 006035 443 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 517 (663)
Q Consensus 443 ~~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N 517 (663)
|.|.++.|...... ....++.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 57999999753321 1235899999999999887778899999999999999999777777899999999999999
Q ss_pred CCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 518 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 518 ~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
++++..+..+..+++|+.|+|++|+++ .+|......+.+|+.|++++|++.|.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccC
Confidence 999877777899999999999999999 456554444788999999999988754
No 9
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=1e-13 Score=134.85 Aligned_cols=128 Identities=27% Similarity=0.330 Sum_probs=108.7
Q ss_pred CCCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCC
Q 006035 443 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 517 (663)
Q Consensus 443 ~~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N 517 (663)
|.|..+.|+..... ....++.|+|++|.|+ .+|..|.++++|+.|+|++|.+++..+..|.++++|+.|+|++|
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46777788643211 1235889999999998 67889999999999999999999888889999999999999999
Q ss_pred CCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 518 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 518 ~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
++++..|..+.++++|+.|+|++|++++ +|......+.+|+.|++++|++.|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeecCC
Confidence 9998888899999999999999999994 55543334789999999999998864
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.47 E-value=6.3e-14 Score=164.69 Aligned_cols=148 Identities=24% Similarity=0.326 Sum_probs=112.0
Q ss_pred cCchHHHHHHHHhhhcCCCCC-CCCCC-CCCCCCCCCCCCCcccccCCCCccceEeEEEccCCCCccc---CC-------
Q 006035 409 KTLPEEVRALQVLKNSLDLPH-RFGWN-GDPCVPQQHPWSGADCQFDRTSHKWVIDGLGLDNQGLRGF---LP------- 476 (663)
Q Consensus 409 ~~~~~d~~aL~~~k~~~~~~~-~~~W~-~~pC~p~~~~w~gv~C~~~~~~~~~~l~~L~Ls~n~l~g~---~p------- 476 (663)
...++|..||++||+++.+|. ..+|+ +..|+ .|.||+|+ . .+|+.|+|+++++.|. +|
T Consensus 8 ~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C----~w~gv~C~-~-----~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKNLLPDWSSNKNPC----TFDGVTCR-D-----DKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGG----GSTTEEEE-T-----TEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred cCCHHHHHHHHHHHhhCCCcccccCCCCCCCCc----CCcceEEC-C-----CcEEEEECCCCCcCCccCccChhHhccC
Confidence 346678999999999988764 34896 33343 69999997 2 3699999999998886 43
Q ss_pred ----------------ccccCCCcCCcccCcCccccccCCC--CCCCCCCCcEEeCCCCCCCCCCcccc-cCCCCCCEEe
Q 006035 477 ----------------NGISKLRHLQSINLSGNSIRGAIPS--SLGTIASLEVLDLSYNFFNGSIPESL-GQLTALRRLN 537 (663)
Q Consensus 477 ----------------~~~~~L~~L~~L~Ls~N~l~g~ip~--~~~~L~~L~~LdLs~N~l~g~iP~~l-~~l~~L~~L~ 537 (663)
..|++|++|+.|+|++|.++|.+|. .++++++|++|||++|.+++.+|..+ .++++|++|+
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 5777888889999999999888888 88888899999999988888888765 7788888888
Q ss_pred ccCCcCCccCCchh--hhccCCCCEEeccCC
Q 006035 538 LNGNTLSGRVPAAL--GGRLLHRASFNFTDN 566 (663)
Q Consensus 538 Ls~N~lsg~iP~~~--~~~l~~L~~l~l~~N 566 (663)
|++|++++..|..+ ...+.+|+.|++++|
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 88888887766552 111344444444444
No 11
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=135.83 Aligned_cols=106 Identities=21% Similarity=0.227 Sum_probs=56.6
Q ss_pred EeEEEccCCCCcccCCc-cccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 461 IDGLGLDNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~-~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
++.|+|++|+|++..+. .|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 44555555555555432 34555555555555555555544455555555555555555555545555555555555555
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+|++++..|..+.. +.+|+.|++++|.
T Consensus 114 ~N~l~~~~~~~~~~-l~~L~~L~L~~N~ 140 (220)
T 2v70_A 114 SNRITCVGNDSFIG-LSSVRLLSLYDNQ 140 (220)
T ss_dssp TSCCCCBCTTSSTT-CTTCSEEECTTSC
T ss_pred CCcCCeECHhHcCC-CccCCEEECCCCc
Confidence 55555444444433 4455555555554
No 12
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=7.6e-13 Score=132.14 Aligned_cols=124 Identities=20% Similarity=0.261 Sum_probs=106.3
Q ss_pred CCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCC
Q 006035 444 PWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 518 (663)
Q Consensus 444 ~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~ 518 (663)
.|.++.|+..... ....++.|+|++|.|++..|..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 20 s~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 6999999754221 12358899999999999999999999999999999999986666778999999999999999
Q ss_pred CCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 519 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 519 l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
+++..+..+..+++|+.|+|++|+++ .+|..+.. +.+|+.|++++|...
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIER-LTHLTHLALDQNQLK 148 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGG-CTTCSEEECCSSCCC
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCccccc-CCCCCEEECCCCcCC
Confidence 99777777899999999999999999 88888865 788999999998643
No 13
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=5.9e-13 Score=132.15 Aligned_cols=124 Identities=23% Similarity=0.235 Sum_probs=79.6
Q ss_pred CCCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCC
Q 006035 443 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 517 (663)
Q Consensus 443 ~~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N 517 (663)
|.|..+.|...... ....++.|+|++|+|++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred ECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666667532211 1124667777777777666666777777777777777777666777777777777777777
Q ss_pred CCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 518 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 518 ~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+++...+..+.++++|+.|+|++|++++..|..+.. +.+|+.|++++|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~ 139 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQD-LHNLNLLSLYDNK 139 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCC-CCCCCEEECCCCc
Confidence 777444444566777777777777776555555544 5566666666665
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.38 E-value=7.5e-14 Score=147.32 Aligned_cols=157 Identities=21% Similarity=0.311 Sum_probs=103.5
Q ss_pred ccCchHHHHHHHHhhhcCC-CCCC--CCCC-CCCCCCCCCCCCCcccccCCC----CccceEeEEEccCCCCcccCCccc
Q 006035 408 SKTLPEEVRALQVLKNSLD-LPHR--FGWN-GDPCVPQQHPWSGADCQFDRT----SHKWVIDGLGLDNQGLRGFLPNGI 479 (663)
Q Consensus 408 ~~~~~~d~~aL~~~k~~~~-~~~~--~~W~-~~pC~p~~~~w~gv~C~~~~~----~~~~~l~~L~Ls~n~l~g~~p~~~ 479 (663)
.....++..+|++||..+. ++.. ..|. ...|.+..|.|.|+.|..... ....+++.|+|++|++. .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 3456678999999998763 3321 2562 112233335799999952100 00124777888888877 667777
Q ss_pred cCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhh------
Q 006035 480 SKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGG------ 553 (663)
Q Consensus 480 ~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~------ 553 (663)
.+|++|+.|+|++|.++ .+|..++++++|+.|+|++|+++ .+|..+.++++|+.|+|++|++.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 77778888888888777 77777777777777777777777 67777777777777777777777777765432
Q ss_pred --ccCCCCEEeccCCC
Q 006035 554 --RLLHRASFNFTDNA 567 (663)
Q Consensus 554 --~l~~L~~l~l~~N~ 567 (663)
.+.+|+.|++++|.
T Consensus 179 ~~~l~~L~~L~L~~n~ 194 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTG 194 (328)
T ss_dssp EEESTTCCEEEEEEEC
T ss_pred hccCCCCCEEECcCCC
Confidence 14455666666554
No 15
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=1.4e-12 Score=129.40 Aligned_cols=112 Identities=24% Similarity=0.312 Sum_probs=101.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|++..|..|.++++|+.|+|++|.|+...+..|..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 57 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 57 KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECC
Confidence 58999999999999999999999999999999999996666668999999999999999999989999999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|++++..+..+.. +.+|+.+++++|++.|.+
T Consensus 137 ~N~l~~~~~~~~~~-l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 137 DNKLQTIAKGTFSP-LRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp SSCCSCCCTTTTTT-CTTCCEEECCSSCEECSG
T ss_pred CCcCCEECHHHHhC-CCCCCEEEeCCCCcCCCC
Confidence 99999665555654 788999999999998864
No 16
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=2.3e-12 Score=126.33 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=98.5
Q ss_pred CCCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCC
Q 006035 443 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 517 (663)
Q Consensus 443 ~~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N 517 (663)
|.|.++.|...+.. ....++.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 57999999753221 1225888999999999777777889999999999999998666667788999999999999
Q ss_pred CCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 518 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 518 ~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
++++..+..+.++++|+.|+|++|++++..+..+.. +.+|+.|++++|...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK-LTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCS
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhcc-CCcCCEEECCCCccc
Confidence 998666666788899999999999988554444444 678888888888643
No 17
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=2.7e-12 Score=122.15 Aligned_cols=107 Identities=24% Similarity=0.305 Sum_probs=91.9
Q ss_pred eEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCC
Q 006035 462 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 541 (663)
Q Consensus 462 ~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N 541 (663)
+.+++++|+|+. +|..+. +.|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..|..+.++++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 458889999886 666553 88999999999999888999999999999999999999777777899999999999999
Q ss_pred cCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 542 TLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 542 ~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|++..|..+.. +.+|+.|++++|++.|.+
T Consensus 89 ~l~~~~~~~~~~-l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDN-LKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTT-CTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcC-CCCCCEEEeCCCCCCCCc
Confidence 999654444554 789999999999998864
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=2.5e-12 Score=127.56 Aligned_cols=112 Identities=19% Similarity=0.235 Sum_probs=104.6
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|++..+..|.++++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 48899999999999988899999999999999999998888889999999999999999999989999999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|++++..|..+.. +.+|+.|++++|++.|.+
T Consensus 138 ~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 138 DNQITTVAPGAFDT-LHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp TSCCCCBCTTTTTT-CTTCCEEECCSCCEECSG
T ss_pred CCcCCEECHHHhcC-CCCCCEEEecCcCCcCCC
Confidence 99999887887776 789999999999998864
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=3.8e-12 Score=127.06 Aligned_cols=111 Identities=20% Similarity=0.233 Sum_probs=98.9
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|....+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 4889999999998777778899999999999999999877778899999999999999999 889999999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|++++..+..+.. +.+|+.|++++|++.|.+
T Consensus 144 ~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 144 QNQLKSIPHGAFDR-LSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTT-CTTCCEEECTTSCBCTTB
T ss_pred CCcCCccCHHHHhC-CCCCCEEEeeCCCccCCc
Confidence 99999544444444 789999999999998864
No 20
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=6.5e-12 Score=123.01 Aligned_cols=113 Identities=23% Similarity=0.262 Sum_probs=98.9
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence 48899999999998777788999999999999999997777778999999999999999997777778999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 573 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~p 573 (663)
+|++++..+..+.. +.+|+.|++++|++.|.++
T Consensus 133 ~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 133 QNQLKSVPDGVFDR-LTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp SSCCSCCCTTTTTT-CTTCCEEECCSCCBCCCTT
T ss_pred CCccceeCHHHhcc-CCCccEEEecCCCeecCCC
Confidence 99999554444444 7899999999999887653
No 21
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=5.7e-12 Score=120.40 Aligned_cols=106 Identities=24% Similarity=0.319 Sum_probs=92.0
Q ss_pred eEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCC
Q 006035 462 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 541 (663)
Q Consensus 462 ~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N 541 (663)
+.+++++|+|. .+|..+. ++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..+.++++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45899999995 6777664 89999999999999998999999999999999999999766666799999999999999
Q ss_pred cCCccCCch-hhhccCCCCEEeccCCCCCCCC
Q 006035 542 TLSGRVPAA-LGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 542 ~lsg~iP~~-~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|++ +|.. +.. +.+|+.|++++|++.|.+
T Consensus 92 ~l~~-l~~~~~~~-l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKS-IPRGAFDN-LKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCC-CCTTTTTT-CTTCSEEECCSSCBCTTB
T ss_pred ccce-eCHHHhcc-ccCCCEEEeCCCCccccc
Confidence 9995 5554 544 789999999999988864
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.32 E-value=4.4e-13 Score=140.35 Aligned_cols=114 Identities=31% Similarity=0.432 Sum_probs=102.0
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+.+.+|..|..+++|+.|+|++|.+++.+|. +..+++|+.|+|++|+++|.+|..+..+++|+.|+|++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 78899999999999999999999999999999999987776 88899999999999999999999999999999999999
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCCCCCCCCCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 578 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~p~~~~c 578 (663)
|+++|.+|.. . .+.+|+.+++++|+.+|+.|. ..|
T Consensus 278 N~l~~~ip~~-~-~l~~L~~l~l~~N~~lc~~p~-~~C 312 (313)
T 1ogq_A 278 NNLCGEIPQG-G-NLQRFDVSAYANNKCLCGSPL-PAC 312 (313)
T ss_dssp SEEEEECCCS-T-TGGGSCGGGTCSSSEEESTTS-SCC
T ss_pred CcccccCCCC-c-cccccChHHhcCCCCccCCCC-CCC
Confidence 9999999986 3 367889999999999999763 356
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.32 E-value=6.7e-12 Score=128.48 Aligned_cols=113 Identities=25% Similarity=0.302 Sum_probs=93.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+++..+..|..+++|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence 37889999999988777778889999999999999987777778889999999999999987777778888999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 573 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~p 573 (663)
+|++++..|..+.. +.+|+.|++++|++.|.+|
T Consensus 190 ~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 190 QNQLKSVPDGVFDR-LTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp SSCCSCCCTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred CCcCCccCHHHHhC-CcCCCEEEccCCCccccCc
Confidence 99998765555554 6788899999998887653
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.30 E-value=8.8e-12 Score=125.94 Aligned_cols=111 Identities=23% Similarity=0.304 Sum_probs=87.9
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 37778888888887777778888888888888888886666667888888888888888886666678888888888888
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 571 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~ 571 (663)
+|++++..|..+.. +.+|+.|++++|++.|.
T Consensus 164 ~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDR-LGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTT-CTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhC-CCCCCEEEeeCCceeCC
Confidence 88888555545544 67788888888887775
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.28 E-value=4e-12 Score=144.77 Aligned_cols=113 Identities=24% Similarity=0.302 Sum_probs=103.8
Q ss_pred eEeEEEccCCCC-cccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGL-RGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l-~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++.|+|++|++ .+.+|..|..+++|+.|+|++|+|++.+|..|.++++|+.|+|++|+|++..|..+.++++|+.|+|
T Consensus 470 ~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 549 (635)
T 4g8a_A 470 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 549 (635)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEEC
T ss_pred hhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEEC
Confidence 478899999985 4567889999999999999999999999999999999999999999999988999999999999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
++|++++..|..+.....+|+.|++++|++.|.|
T Consensus 550 s~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 550 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999999988888775578999999999999975
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.26 E-value=1.6e-11 Score=127.13 Aligned_cols=111 Identities=24% Similarity=0.269 Sum_probs=97.5
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+.++++|+.|+|+
T Consensus 101 ~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 101 ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 37889999999998888889999999999999999997777778899999999999999996555667889999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|+++ .+|..+.. ...|+.+++++|++.|.+
T Consensus 181 ~N~l~-~ip~~~~~-~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 181 ENSLY-TIPKGFFG-SHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SSCCC-CCCTTTTT-TCCCSEEECCSCCBCCSG
T ss_pred CCcCC-ccChhhcc-cccCCeEEeCCCCccCcC
Confidence 99998 78888776 568999999999998864
No 27
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=1.1e-11 Score=114.52 Aligned_cols=105 Identities=22% Similarity=0.259 Sum_probs=91.2
Q ss_pred eEeEEEccCCCCc-ccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++.|++++|.++ +.+|..+..+++|+.|+|++|.+++. ..++.+++|+.|+|++|++++.+|..+..+++|+.|+|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 4788999999998 88898889999999999999999866 78889999999999999999888888888999999999
Q ss_pred cCCcCCcc-CCchhhhccCCCCEEeccCCC
Q 006035 539 NGNTLSGR-VPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 539 s~N~lsg~-iP~~~~~~l~~L~~l~l~~N~ 567 (663)
++|++++. .|..+.. +++|+.|++++|+
T Consensus 96 s~N~i~~~~~~~~~~~-l~~L~~L~l~~N~ 124 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKK-LENLKSLDLFNCE 124 (149)
T ss_dssp TTSCCCSHHHHGGGGG-CTTCCEEECTTCG
T ss_pred CCCcCCChHHHHHHhh-CCCCCEEeCcCCc
Confidence 99999863 3355555 7889999999986
No 28
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.22 E-value=1.8e-11 Score=128.97 Aligned_cols=110 Identities=23% Similarity=0.374 Sum_probs=83.9
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.++ .+|..+.++++|+.|+|++|.+++ +|..++.+++|+.|+|++|++.+.+|..+.++++|+.|+|++
T Consensus 185 L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 185 LQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp CCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 677788888777 677777788888888888888874 555677788888888888887778887777888888888888
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 573 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~p 573 (663)
|++.+.+|..+.. +.+|+.|++++|+.+...|
T Consensus 263 n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 263 CSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp CTTCCBCCTTGGG-CTTCCEEECTTCTTCCCCC
T ss_pred CCchhhcchhhhc-CCCCCEEeCCCCCchhhcc
Confidence 7777777777665 6777888888777665544
No 29
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.22 E-value=3.9e-11 Score=122.57 Aligned_cols=112 Identities=23% Similarity=0.310 Sum_probs=98.3
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+++..+..|..+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..+.++++|+.|+|+
T Consensus 110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 48889999999999888889999999999999999997767778999999999999999997777778999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|++++ +|......+.+|+.|++++|++.|.+
T Consensus 190 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 190 NNQLKR-VPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SSCCSC-CCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcCCc-CCHHHhccccCCCEEEecCCCeeCCC
Confidence 999995 45443334788999999999998865
No 30
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=1.8e-11 Score=129.51 Aligned_cols=104 Identities=16% Similarity=0.177 Sum_probs=81.2
Q ss_pred EccCC-CCcccCCccccCCCcCCcccCcC-ccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCc
Q 006035 465 GLDNQ-GLRGFLPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNT 542 (663)
Q Consensus 465 ~Ls~n-~l~g~~p~~~~~L~~L~~L~Ls~-N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 542 (663)
+++++ +|+. +|. |..+++|+.|+|++ |+|++..+..|.+|++|+.|+|++|+|++..|..|.++++|+.|+|++|+
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44455 5664 677 88888888888886 88887777888888888888888888888888888888888888888888
Q ss_pred CCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 543 LSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 543 lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
|++ +|......+. |+.|++.+|++.|.+
T Consensus 92 l~~-~~~~~~~~~~-L~~l~l~~N~~~c~c 119 (347)
T 2ifg_A 92 LES-LSWKTVQGLS-LQELVLSGNPLHCSC 119 (347)
T ss_dssp CSC-CCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred cce-eCHHHcccCC-ceEEEeeCCCccCCC
Confidence 884 4554444333 888888888887754
No 31
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.21 E-value=4.5e-11 Score=120.68 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=75.4
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus 61 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 61 LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140 (251)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC
Confidence 66777777777776666677777777777777777766666677777777777777777755555567777777777777
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
|++++..|..+.. +.+|+.|++++|..
T Consensus 141 N~l~~~~~~~~~~-l~~L~~L~L~~N~l 167 (251)
T 3m19_A 141 NQLQSIPAGAFDK-LTNLQTLSLSTNQL 167 (251)
T ss_dssp SCCCCCCTTTTTT-CTTCCEEECCSSCC
T ss_pred CcCCccCHHHcCc-CcCCCEEECCCCcC
Confidence 7777444434444 56777777777763
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.21 E-value=2e-11 Score=133.83 Aligned_cols=113 Identities=29% Similarity=0.360 Sum_probs=86.3
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+.+..|..|.++++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 37778888888887777778888888888888888877777777888888888888888887777778888888888888
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 573 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~p 573 (663)
+|++++ +|......+++|+.|++++|+..|.+|
T Consensus 380 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 380 TNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcccc-CCHhHhccCCcccEEEccCCCcccCCC
Confidence 888875 444333336778888888888777654
No 33
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=2.4e-11 Score=117.79 Aligned_cols=90 Identities=26% Similarity=0.352 Sum_probs=85.8
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|++..|..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 48899999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred CCcCCccCCc
Q 006035 540 GNTLSGRVPA 549 (663)
Q Consensus 540 ~N~lsg~iP~ 549 (663)
+|++++..+.
T Consensus 135 ~N~l~c~c~l 144 (192)
T 1w8a_A 135 SNPFNCNCHL 144 (192)
T ss_dssp TCCBCCSGGG
T ss_pred CCCccCcCcc
Confidence 9999988764
No 34
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=2.9e-11 Score=114.95 Aligned_cols=106 Identities=16% Similarity=0.181 Sum_probs=91.2
Q ss_pred CCCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCC
Q 006035 443 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 517 (663)
Q Consensus 443 ~~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N 517 (663)
|.|..+.|+..... ....++.|+|++|.|++..|..|..|++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46788888643221 1135889999999999999999999999999999999999777777899999999999999
Q ss_pred CCCCCCcccccCCCCCCEEeccCCcCCccCC
Q 006035 518 FFNGSIPESLGQLTALRRLNLNGNTLSGRVP 548 (663)
Q Consensus 518 ~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP 548 (663)
+|++..|..+..+++|+.|+|++|++++.-+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9997777789999999999999999986644
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.19 E-value=2.6e-11 Score=124.70 Aligned_cols=112 Identities=25% Similarity=0.288 Sum_probs=98.1
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+.+..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 38889999999998777789999999999999999997777779999999999999999998889999999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|++++..+..+.. +.+|+.+++++|++.|.+
T Consensus 210 ~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 210 ANNLSALPTEALAP-LRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp SSCCSCCCHHHHTT-CTTCCEEECCSSCEECSG
T ss_pred CCcCCcCCHHHccc-CcccCEEeccCCCccCCC
Confidence 99999654444554 788999999999988864
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.19 E-value=2.3e-11 Score=126.31 Aligned_cols=113 Identities=24% Similarity=0.302 Sum_probs=98.1
Q ss_pred eEeEEEccCCCCcc-cCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.+.+ .+|..+..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|+.|+|
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 37889999999987 67888999999999999999999888888999999999999999999777778888999999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
++|++++..|..+.....+|+.|++++|+..|.+
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 9999998888877764458899999999987754
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.17 E-value=3.7e-11 Score=134.97 Aligned_cols=126 Identities=21% Similarity=0.244 Sum_probs=106.2
Q ss_pred CCCCCcccccCCC-------CccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCC
Q 006035 443 HPWSGADCQFDRT-------SHKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLS 515 (663)
Q Consensus 443 ~~w~gv~C~~~~~-------~~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs 515 (663)
|+|.|+ |+.... .....++.|+|++|.+++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||+
T Consensus 4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 468776 753211 111358999999999999999999999999999999999999888999999999999999
Q ss_pred CCCCCCCCcccccCCCCCCEEeccCCcCCc-cCCchhhhccCCCCEEeccCCCCCC
Q 006035 516 YNFFNGSIPESLGQLTALRRLNLNGNTLSG-RVPAALGGRLLHRASFNFTDNAGLC 570 (663)
Q Consensus 516 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg-~iP~~~~~~l~~L~~l~l~~N~~lc 570 (663)
+|++++..|..++++++|++|+|++|++++ .+|..+.. +.+|+.|++++|....
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~-l~~L~~L~L~~n~~~~ 137 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN-LTNLQTLRIGNVETFS 137 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT-CTTCCEEEEEESSSCC
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc-cCCccEEECCCCcccc
Confidence 999998888889999999999999999986 45666655 7789999999887443
No 38
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.16 E-value=4.8e-11 Score=127.38 Aligned_cols=126 Identities=19% Similarity=0.137 Sum_probs=100.3
Q ss_pred CCCCCcccccCCCC-----ccceEeEEEccCCCCcccCCcccc-CCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCC
Q 006035 443 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSY 516 (663)
Q Consensus 443 ~~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~ 516 (663)
|.+..+.|...... ....++.|+|++|+|++..+..+. ++++|+.|+|++|+|++..+..|.++++|+.|+|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45667777643211 112477899999999988888787 899999999999999987778899999999999999
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 517 NFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 517 N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
|+|++..+..+.++++|+.|+|++|++++..|..+.. +.+|+.|++++|...
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-MAQLQKLYLSQNQIS 149 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC-cccCCEEECCCCcCC
Confidence 9998777777888999999999999998766666665 678888999888643
No 39
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.16 E-value=1e-10 Score=119.38 Aligned_cols=133 Identities=19% Similarity=0.243 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCC
Q 006035 432 GWNGDPCVPQQHPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTI 506 (663)
Q Consensus 432 ~W~~~pC~p~~~~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L 506 (663)
.|.+..|... ..|..+.|+..... .+..++.|+|++|++.+..+..|.++++|+.|+|++|.++...+..|.++
T Consensus 6 ~~~~~~C~c~-~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l 84 (270)
T 2o6q_A 6 KKDGGVCSCN-NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL 84 (270)
T ss_dssp GGGTCSBEEE-TTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSC
T ss_pred CCCCCCCEeC-CCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCC
Confidence 4555555311 13555666532211 11236777888887777666677777777777777777774444445666
Q ss_pred CCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCC
Q 006035 507 ASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 566 (663)
Q Consensus 507 ~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N 566 (663)
++|+.|+|++|++++..+..+.++++|+.|+|++|++++..|..+.. +.+|+.|++++|
T Consensus 85 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n 143 (270)
T 2o6q_A 85 KNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYN 143 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSS
T ss_pred CCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-CcCCCEEECCCC
Confidence 67777777766666544455556666666666666665433333322 344445554444
No 40
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.15 E-value=3.7e-11 Score=113.41 Aligned_cols=103 Identities=25% Similarity=0.303 Sum_probs=49.3
Q ss_pred EeEEEccCCCCc-ccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 461 IDGLGLDNQGLR-GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 461 l~~L~Ls~n~l~-g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
++.|+|++|.+. +.+|..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++.+|..+..+++|+.|+|+
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 103 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS 103 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence 444555555554 44444445555555555555555433 344455555555555555554444444445555555555
Q ss_pred CCcCCccCC--chhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVP--AALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP--~~~~~~l~~L~~l~l~~N~ 567 (663)
+|++++ +| ..+.. +++|+.|++++|+
T Consensus 104 ~N~l~~-~~~~~~l~~-l~~L~~L~l~~N~ 131 (168)
T 2ell_A 104 GNKLKD-ISTLEPLKK-LECLKSLDLFNCE 131 (168)
T ss_dssp SSSCCS-SGGGGGGSS-CSCCCEEECCSSG
T ss_pred CCccCc-chhHHHHhc-CCCCCEEEeeCCc
Confidence 555542 12 22222 3445555555443
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.15 E-value=3.9e-11 Score=136.56 Aligned_cols=113 Identities=20% Similarity=0.193 Sum_probs=98.9
Q ss_pred eEeEEEccCCCCcc-cCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRG-FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g-~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.+.+ .+|..+..+++|+.|+|++|++++.+|..+.++++|+.|+|++|++++.+|..+.++++|+.|+|
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 48889999999988 47888999999999999999999888888999999999999999999888999999999999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 573 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~p 573 (663)
++|+++ .+|..+.....+|+.+++++|++.|.++
T Consensus 529 ~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 529 SFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp TTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999998 7788776643469999999999998763
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.15 E-value=5.4e-11 Score=135.33 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=91.2
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|+|++..+..|.+|++|+.|+|++|+|++..|..|.+|++|++|+|++|+|++..|..+.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 58899999999998888899999999999999999998778889999999999999999987666778889999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
+|++++..+..+.. +.+|+.|++++|..
T Consensus 133 ~N~l~~l~~~~~~~-L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 133 ETNLASLENFPIGH-LKTLKELNVAHNLI 160 (635)
T ss_dssp TSCCCCSTTCCCTT-CTTCCEEECCSSCC
T ss_pred CCcCCCCChhhhhc-CcccCeeccccCcc
Confidence 99988544444544 67788888888764
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.14 E-value=1.4e-10 Score=118.56 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=93.6
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+++..+..|.++++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS 165 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence 48889999999998888888999999999999999998777778999999999999999997777778899999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
+|++++..|..+.. +.+|+.|++++|...
T Consensus 166 ~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 166 YNQLQSLPEGVFDK-LTQLKDLRLYQNQLK 194 (272)
T ss_dssp SSCCCCCCTTTTTT-CTTCCEEECCSSCCS
T ss_pred CCCcCccCHHHhcC-CccCCEEECCCCcCC
Confidence 99999655544444 788999999998744
No 44
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=8.6e-11 Score=133.02 Aligned_cols=102 Identities=26% Similarity=0.341 Sum_probs=93.1
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.|++ +|. |+.|++|+.|+|++|.|+ .+|..|++|++|+.|+|++|+|++ +| .++++++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 6789999999997 565 999999999999999999 889999999999999999999996 78 899999999999999
Q ss_pred CcCCccC-CchhhhccCCCCEEeccCCCC
Q 006035 541 NTLSGRV-PAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 541 N~lsg~i-P~~~~~~l~~L~~l~l~~N~~ 568 (663)
|++++.. |..+.. +.+|+.|++++|+.
T Consensus 518 N~l~~~~~p~~l~~-l~~L~~L~L~~N~l 545 (567)
T 1dce_A 518 NRLQQSAAIQPLVS-CPRLVLLNLQGNSL 545 (567)
T ss_dssp SCCCSSSTTGGGGG-CTTCCEEECTTSGG
T ss_pred CCCCCCCCcHHHhc-CCCCCEEEecCCcC
Confidence 9999876 888876 78999999999974
No 45
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.12 E-value=1.2e-10 Score=124.13 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=70.0
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|+|++..+..|.+|++|+.|+|++|+|++..+..|..+++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 66677777777766666677777777777777777665566667777777777777777766666667777777777777
Q ss_pred CcCCccCCchhh---hccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALG---GRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~---~~l~~L~~l~l~~N~ 567 (663)
|+++ .+|..+. ..+.+|+.|++++|.
T Consensus 146 N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 146 NQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SCCC-SCCGGGTC----CTTCCEEECCSSC
T ss_pred CcCC-eeCHHHhcCcccCCcCCEEECCCCC
Confidence 7776 3454432 225566666666665
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.12 E-value=1.1e-10 Score=131.66 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=103.9
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCcccc-ccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~-g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.+.+..|..+.++++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++..|..+.++++|+.|+|
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 4889999999999999999999999999999999998 689999999999999999999999988999999999999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 573 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~p 573 (663)
++|++++..|..+.. +.+|+.+++++|+..|.++
T Consensus 502 ~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 502 ASNQLKSVPDGIFDR-LTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CSSCCSCCCTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred CCCcCCCCCHHHhhc-ccCCcEEEecCCcccCCCc
Confidence 999999776666655 7889999999999988764
No 47
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.10 E-value=2.4e-10 Score=126.30 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=95.3
Q ss_pred CCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCC
Q 006035 444 PWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 518 (663)
Q Consensus 444 ~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~ 518 (663)
.|..+.|...... .+..++.|+|++|+|++..+..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|+
T Consensus 12 ~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 12 QDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4667777643211 12257889999999998888888899999999999999988888888888899999999988
Q ss_pred CCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 519 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 519 l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+++..+..+.++++|+.|+|++|++++..|..+.. +.+|+.|++++|.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~l~~n~ 139 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD-LYNLKSLEVGDND 139 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEEECCTT
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccc-cccCCEEECCCCc
Confidence 88655566788888888888888888776666654 5677777777765
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.10 E-value=2.8e-10 Score=117.73 Aligned_cols=108 Identities=25% Similarity=0.264 Sum_probs=96.4
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|. .+|..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 4889999999998 678889999999999999999998878889999999999999999997777778999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
+|+++ .+|......+.+|+.|++++|...
T Consensus 157 ~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 157 NNNLT-ELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp TSCCS-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCcCC-ccCHHHhcCcCCCCEEECCCCcCC
Confidence 99999 566655445789999999999754
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.09 E-value=1.7e-10 Score=117.93 Aligned_cols=106 Identities=20% Similarity=0.323 Sum_probs=51.6
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+.+..+..|.++++|+.|+|++|.+++..+..|.++++|+.|+|++|++++..+..+.++++|+.|+|++
T Consensus 54 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 133 (276)
T 2z62_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (276)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC
Confidence 44444444444444444444444555555555554444444444555555555555555444333445555555555555
Q ss_pred CcCCc-cCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSG-RVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg-~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|++++ .+|..+.. +.+|+.|++++|.
T Consensus 134 n~l~~~~l~~~~~~-l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 134 NLIQSFKLPEYFSN-LTNLEHLDLSSNK 160 (276)
T ss_dssp SCCCCCCCCGGGGG-CTTCCEEECCSSC
T ss_pred CccceecCchhhcc-CCCCCEEECCCCC
Confidence 55543 23444443 4455555555553
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.08 E-value=3.3e-10 Score=116.31 Aligned_cols=106 Identities=22% Similarity=0.235 Sum_probs=55.3
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCcc-ccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
++.|+|++|.+.+..|..|.++++|+.|+|++|. +....|..+..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 4455555555555445555555555555555554 443334455555555555555555555445555555555555555
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+|++++..+..+.. +.+|+.|++++|.
T Consensus 138 ~n~l~~~~~~~~~~-l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 138 DNALQALPDDTFRD-LGNLTHLFLHGNR 164 (285)
T ss_dssp SSCCCCCCTTTTTT-CTTCCEEECCSSC
T ss_pred CCcccccCHhHhcc-CCCccEEECCCCc
Confidence 55555332222332 4556666666554
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.08 E-value=1.7e-10 Score=126.35 Aligned_cols=110 Identities=25% Similarity=0.311 Sum_probs=98.2
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|+++. +| .+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 186 ~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 186 NLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT
T ss_pred ccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC
Confidence 48899999999985 44 58899999999999999999999999999999999999999999889999999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|++++. |......+.+|+.|++++|++.|.+
T Consensus 264 ~N~l~~~-~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 264 HNNLTLL-PHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TSCCCCC-CTTTTSSCTTCCEEECCSSCEECSS
T ss_pred CCCCCcc-ChhHhccccCCCEEEcCCCCccCCC
Confidence 9999954 5444344788999999999999975
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.08 E-value=3.6e-10 Score=115.51 Aligned_cols=108 Identities=20% Similarity=0.287 Sum_probs=90.4
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCC-CCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.+.+..+..|.++++|+.|+|++|.+.+..+..+..+++|+.|+|++|++++ .+|..+.++++|+.|+|
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 77 HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEEC
Confidence 48889999999998888889999999999999999997777788999999999999999986 46888999999999999
Q ss_pred cCCcCCccCCchhhhccCCCC----EEeccCCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRA----SFNFTDNAG 568 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~----~l~l~~N~~ 568 (663)
++|++++..+..+.. +..++ .+++++|..
T Consensus 157 s~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~l 189 (276)
T 2z62_A 157 SSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPM 189 (276)
T ss_dssp CSSCCCEECGGGGHH-HHTCTTCCEEEECCSSCC
T ss_pred CCCCCCcCCHHHhhh-hhhccccceeeecCCCcc
Confidence 999998765555554 44454 788888864
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.08 E-value=1.4e-10 Score=127.56 Aligned_cols=110 Identities=23% Similarity=0.256 Sum_probs=98.2
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|++++. +.+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 197 ~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 274 (452)
T 3zyi_A 197 NLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274 (452)
T ss_dssp TCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECC
Confidence 388899999999875 368899999999999999999999999999999999999999999889999999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|++++. |......+.+|+.|++++|++.|.+
T Consensus 275 ~N~l~~~-~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 275 HNNLSSL-PHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp SSCCSCC-CTTSSTTCTTCCEEECCSSCEECST
T ss_pred CCcCCcc-ChHHhccccCCCEEEccCCCcCCCC
Confidence 9999954 5444344788999999999999875
No 54
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.08 E-value=1.5e-10 Score=134.86 Aligned_cols=103 Identities=27% Similarity=0.410 Sum_probs=60.8
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+. .+|..+.+|++|+.|+|++|.|+ .+|..|++|++|+.|||++|+|+ .+|..+++|++|+.|+|++
T Consensus 226 L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~ 302 (727)
T 4b8c_D 226 WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFD 302 (727)
T ss_dssp CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCS
T ss_pred CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCC
Confidence 555666666655 45555556666666666666665 55555666666666666666666 5565566666666666666
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
|.|+ .+|..+.. +.+|+.|++++|+.
T Consensus 303 N~l~-~lp~~~~~-l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 303 NMVT-TLPWEFGN-LCNLQFLGVEGNPL 328 (727)
T ss_dssp SCCC-CCCSSTTS-CTTCCCEECTTSCC
T ss_pred CCCC-ccChhhhc-CCCccEEeCCCCcc
Confidence 6654 55555443 45566666666553
No 55
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.07 E-value=5.2e-11 Score=141.35 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=94.3
Q ss_pred eEeEEEccCCCCc-----ccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCC
Q 006035 460 VIDGLGLDNQGLR-----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 534 (663)
Q Consensus 460 ~l~~L~Ls~n~l~-----g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~ 534 (663)
.++.|+|++|.++ +..+..|.+|++|+.|+|++|++++.+|..|..+++|+.|+|++|+|++..|..+. ++|+
T Consensus 452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~ 529 (844)
T 3j0a_A 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLE 529 (844)
T ss_dssp TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCC
T ss_pred ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cccc
Confidence 3788999999987 45556789999999999999999999999999999999999999999977666665 8999
Q ss_pred EEeccCCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 535 RLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 535 ~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
.|+|++|+++|.+|..+ .+++.+++++|++.|.+
T Consensus 530 ~L~Ls~N~l~~~~~~~~----~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 530 ILDISRNQLLAPNPDVF----VSLSVLDITHNKFICEC 563 (844)
T ss_dssp EEEEEEECCCCCCSCCC----SSCCEEEEEEECCCCSS
T ss_pred EEECCCCcCCCCChhHh----CCcCEEEecCCCccccc
Confidence 99999999999988754 46899999999999965
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.07 E-value=1.9e-10 Score=122.01 Aligned_cols=109 Identities=25% Similarity=0.338 Sum_probs=94.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|++++..+..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..+.++++|++|+|+
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 58999999999998877799999999999999999998888899999999999999999996555668999999999999
Q ss_pred CCcCCccCCc-hhhhccCCCCEEeccCCCCC
Q 006035 540 GNTLSGRVPA-ALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 540 ~N~lsg~iP~-~~~~~l~~L~~l~l~~N~~l 569 (663)
+|+++ .+|. .....+.+|+.|++++|..+
T Consensus 133 ~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 133 GNPYK-TLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp TCCCS-SSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred CCCCc-ccCchhhhccCCCCcEEECCCCccc
Confidence 99998 5665 33333788999999988533
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.06 E-value=2.3e-10 Score=125.37 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=102.3
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 48899999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
+|++++..|..+.. +++|+.|++++|...
T Consensus 356 ~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 356 YNHIRALGDQSFLG-LPNLKELALDTNQLK 384 (455)
T ss_dssp SSCCCEECTTTTTT-CTTCCEEECCSSCCS
T ss_pred CCcccccChhhccc-cccccEEECCCCccc
Confidence 99999888888876 789999999999754
No 58
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=2.9e-10 Score=108.40 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=79.9
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|++..|..|.++++|+.|+|++|+|++..+..|.++++|+.|+|++|+|++..+..+..+++|+.|+|+
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 58899999999999999999999999999999999997666678999999999999999997666679999999999999
Q ss_pred CCcCCcc
Q 006035 540 GNTLSGR 546 (663)
Q Consensus 540 ~N~lsg~ 546 (663)
+|++...
T Consensus 114 ~N~~~c~ 120 (174)
T 2r9u_A 114 NNPWDCE 120 (174)
T ss_dssp SSCBCTT
T ss_pred CCCcccc
Confidence 9999854
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.05 E-value=3.8e-10 Score=124.02 Aligned_cols=120 Identities=23% Similarity=0.277 Sum_probs=93.8
Q ss_pred CCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCC
Q 006035 445 WSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFF 519 (663)
Q Consensus 445 w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l 519 (663)
|..+.|...+.. .+..++.|+|++|+|++..|..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 566777643211 123588999999999999999999999999999999999988889999999999999999999
Q ss_pred CCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccC
Q 006035 520 NGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTD 565 (663)
Q Consensus 520 ~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~ 565 (663)
++..+..+..+++|+.|+|++|++++ +|......+.+|+.|++++
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~ 180 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGE 180 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCC
T ss_pred CccChhhhcccCCCCEEECCCCCcce-eCHhHHhcCCcccEEeCCC
Confidence 97777778899999999999999984 4442222244455555444
No 60
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.05 E-value=7.7e-11 Score=108.87 Aligned_cols=103 Identities=23% Similarity=0.252 Sum_probs=89.3
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCC-CcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS-IPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~-iP~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.+.+. ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++. .|..+..+++|+.|++
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 488999999999987 7899999999999999999988888888899999999999999963 4588999999999999
Q ss_pred cCCcCCccCC---chhhhccCCCCEEeccC
Q 006035 539 NGNTLSGRVP---AALGGRLLHRASFNFTD 565 (663)
Q Consensus 539 s~N~lsg~iP---~~~~~~l~~L~~l~l~~ 565 (663)
++|++++..+ ..+.. +++|+.|++++
T Consensus 121 ~~N~l~~~~~~~~~~~~~-l~~L~~L~l~d 149 (149)
T 2je0_A 121 FNCEVTNLNDYRENVFKL-LPQLTYLDGYD 149 (149)
T ss_dssp TTCGGGGSTTHHHHHHHH-CTTCCEETTBC
T ss_pred cCCcccchHHHHHHHHHH-CCCcccccCCC
Confidence 9999996544 24444 78899988763
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.05 E-value=4.5e-10 Score=116.52 Aligned_cols=111 Identities=19% Similarity=0.235 Sum_probs=100.0
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccc-cCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRG-AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g-~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.+.+..+..+..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|++++..|..+..+++|+.|+|
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 38889999999999999999999999999999999997 68999999999999999999999888999999999999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCCCCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 571 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~ 571 (663)
++|++++..+..+.. +.+|+.|++++|.....
T Consensus 207 ~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 207 SHNNFFSLDTFPYKC-LNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TTSCCSBCCSGGGTT-CTTCCEEECTTSCCCBC
T ss_pred CCCccCccChhhccC-cccCCEeECCCCCCccc
Confidence 999999665555554 78999999999986543
No 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.04 E-value=5.4e-10 Score=127.08 Aligned_cols=105 Identities=25% Similarity=0.346 Sum_probs=44.2
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+++..|..|.++++|+.|+|++|.+++..|..|+++++|++|+|++|++++..|..++++++|++|+|++
T Consensus 58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC
Confidence 33444444444444344444444444444444444433344444444444444444444433333344444444444444
Q ss_pred CcCCc-cCCchhhhccCCCCEEeccCC
Q 006035 541 NTLSG-RVPAALGGRLLHRASFNFTDN 566 (663)
Q Consensus 541 N~lsg-~iP~~~~~~l~~L~~l~l~~N 566 (663)
|++++ .+|..+.. +.+|+.|++++|
T Consensus 138 n~l~~~~lp~~~~~-l~~L~~L~Ls~n 163 (606)
T 3vq2_A 138 NFIHSCKLPAYFSN-LTNLVHVDLSYN 163 (606)
T ss_dssp SCCCCCCCCGGGGT-CTTCCEEECCSS
T ss_pred CcccceechHhHhh-cCCCCEEEccCC
Confidence 44432 33444333 344444444444
No 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.03 E-value=2.7e-10 Score=110.65 Aligned_cols=103 Identities=23% Similarity=0.288 Sum_probs=54.9
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|++++|.+. .++.+..+++|+.|+|++|.+++..|..++.+++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus 68 L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 68 IKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp CSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred CCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence 555555555433 223455555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|++.+.+| .+.. +++|+.|++++|.
T Consensus 146 n~~i~~~~-~l~~-l~~L~~L~l~~n~ 170 (197)
T 4ezg_A 146 NGAITDIM-PLKT-LPELKSLNIQFDG 170 (197)
T ss_dssp CTBCCCCG-GGGG-CSSCCEEECTTBC
T ss_pred CCCccccH-hhcC-CCCCCEEECCCCC
Confidence 55222444 2332 4555555555554
No 64
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.03 E-value=2.3e-10 Score=130.23 Aligned_cols=111 Identities=23% Similarity=0.272 Sum_probs=94.5
Q ss_pred eEeEEEccCCCCccc---CCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEE
Q 006035 460 VIDGLGLDNQGLRGF---LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRL 536 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~---~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L 536 (663)
.++.|+|++|.+.+. .+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+.+++.| .|
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L 528 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YL 528 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EE
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EE
Confidence 478899999988772 33568888999999999999998888889999999999999999998888899999999 99
Q ss_pred eccCCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 537 NLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 537 ~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|++|++++..|..+.. +.+|+.+++++|++.|.+
T Consensus 529 ~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 529 NLASNHISIILPSLLPI-LSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp ECCSSCCCCCCGGGHHH-HHTSSEEECTTCCEECSG
T ss_pred ECcCCcccccCHhhccc-CCCCCEEeCCCCCccccC
Confidence 99999999776766665 678899999999988864
No 65
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.03 E-value=1.7e-10 Score=108.86 Aligned_cols=106 Identities=25% Similarity=0.268 Sum_probs=91.8
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCC-cccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~i-P~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.+++. ..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.. +..+..+++|+.|+|
T Consensus 50 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l 127 (168)
T 2ell_A 50 NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127 (168)
T ss_dssp GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEEC
T ss_pred CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEe
Confidence 488999999999987 88999999999999999999888888888999999999999999542 278999999999999
Q ss_pred cCCcCCccCC---chhhhccCCCCEEeccCCCC
Q 006035 539 NGNTLSGRVP---AALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 539 s~N~lsg~iP---~~~~~~l~~L~~l~l~~N~~ 568 (663)
++|++++..+ ..+. .+++|+.|++++|..
T Consensus 128 ~~N~l~~~~~~~~~~~~-~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 128 FNCEVTNLNDYRESVFK-LLPQLTYLDGYDRED 159 (168)
T ss_dssp CSSGGGTSTTHHHHHHT-TCSSCCEETTEETTS
T ss_pred eCCcCcchHHHHHHHHH-hCccCcEecCCCCCh
Confidence 9999995533 2444 478999999999864
No 66
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=3.7e-10 Score=119.39 Aligned_cols=103 Identities=24% Similarity=0.323 Sum_probs=87.2
Q ss_pred CCCCCcccccC-CCC------ccceEeEEEccC-CCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeC
Q 006035 443 HPWSGADCQFD-RTS------HKWVIDGLGLDN-QGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDL 514 (663)
Q Consensus 443 ~~w~gv~C~~~-~~~------~~~~l~~L~Ls~-n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdL 514 (663)
|.|..+.|... ... ....|+.|+|++ |.|++..+..|.+|++|+.|+|++|+|++..|..|.+|++|+.|||
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 56888888754 111 112489999996 9999998899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccCCCCCCEEeccCCcCCcc
Q 006035 515 SYNFFNGSIPESLGQLTALRRLNLNGNTLSGR 546 (663)
Q Consensus 515 s~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~ 546 (663)
++|+|++..|..+..++ |+.|+|.+|+|...
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 99999966666666665 99999999999854
No 67
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.02 E-value=5.5e-10 Score=127.03 Aligned_cols=109 Identities=17% Similarity=0.061 Sum_probs=95.6
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|++..|..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++|++++..|..++++++|++|+|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence 58899999999999889999999999999999999998889999999999999999999998888899999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
+|++++..|..+.. +.+|+.|++++|...
T Consensus 114 ~n~i~~l~~~~~~~-l~~L~~L~L~~n~l~ 142 (606)
T 3t6q_A 114 QTGISSIDFIPLHN-QKTLESLYLGSNHIS 142 (606)
T ss_dssp TSCCSCGGGSCCTT-CTTCCEEECCSSCCC
T ss_pred ccCcccCCcchhcc-CCcccEEECCCCccc
Confidence 99998654555554 678899999988744
No 68
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.01 E-value=8.9e-10 Score=106.85 Aligned_cols=103 Identities=28% Similarity=0.398 Sum_probs=90.4
Q ss_pred eEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCC
Q 006035 462 DGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGN 541 (663)
Q Consensus 462 ~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N 541 (663)
+.+++++|+|. .+|..+. ..|+.|+|++|+++ .+|..|..+++|+.|+|++|++++..|..+.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35899999988 4666553 68999999999998 78899999999999999999999888889999999999999999
Q ss_pred cCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 542 TLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 542 ~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
++++..|..+.. +.+|+.|++++|...
T Consensus 89 ~l~~i~~~~f~~-l~~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 89 RLRCIPPRTFDG-LKSLRLLSLHGNDIS 115 (193)
T ss_dssp CCCBCCTTTTTT-CTTCCEEECCSSCCC
T ss_pred ccCEeCHHHhCC-CCCCCEEECCCCCCC
Confidence 999776666665 789999999999754
No 69
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.01 E-value=2.7e-10 Score=125.83 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=98.2
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|++++..+..+.++++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 48889999999997666789999999999999999998888889999999999999999999889999999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
+|++++ +|......+.+|+.|++++|++.|.+
T Consensus 305 ~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 305 GNQLTT-LEESVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp SSCCSC-CCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred CCcCce-eCHhHcCCCcccCEEEccCCCccCcc
Confidence 999995 45444334678999999999988864
No 70
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.00 E-value=1.6e-10 Score=132.78 Aligned_cols=108 Identities=12% Similarity=0.219 Sum_probs=86.5
Q ss_pred eEeEEEccCCCCccc-----------------CCcccc--CCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCC-C
Q 006035 460 VIDGLGLDNQGLRGF-----------------LPNGIS--KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-F 519 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~-----------------~p~~~~--~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~-l 519 (663)
.++.|+|++|.++|. +|..++ +|++|+.|+|++|.+.|.+|..|+++++|+.|+|++|+ +
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l 286 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence 478888888888886 888888 88888888888888888888888888888888888887 8
Q ss_pred CC-CCcccccCC------CCCCEEeccCCcCCccCCc--hhhhccCCCCEEeccCCCCC
Q 006035 520 NG-SIPESLGQL------TALRRLNLNGNTLSGRVPA--ALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 520 ~g-~iP~~l~~l------~~L~~L~Ls~N~lsg~iP~--~~~~~l~~L~~l~l~~N~~l 569 (663)
+| .+|..++.+ ++|+.|+|++|+++ .+|. .+.. +.+|+.|++++|...
T Consensus 287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~-l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK-MKKLGMLECLYNQLE 343 (636)
T ss_dssp CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT-CTTCCEEECCSCCCE
T ss_pred ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc-CCCCCEEeCcCCcCc
Confidence 87 788777665 77888888888887 7777 6655 567777777777643
No 71
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.99 E-value=3.3e-10 Score=107.93 Aligned_cols=101 Identities=19% Similarity=0.165 Sum_probs=45.8
Q ss_pred EeEEEccCCCCcccCCccccCCC-cCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLR-HLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~-~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
++.|+|++|++.. +| .+..+. +|+.|+|++|.+++. ..+..+++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 21 L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 21 DRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred ceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence 4445555555542 22 233332 555555555555433 344455555555555555543222223445555555555
Q ss_pred CCcCCccCCc--hhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVPA--ALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP~--~~~~~l~~L~~l~l~~N~ 567 (663)
+|+++ .+|. .+.. +++|+.|++++|+
T Consensus 97 ~N~i~-~~~~~~~l~~-l~~L~~L~l~~N~ 124 (176)
T 1a9n_A 97 NNSLV-ELGDLDPLAS-LKSLTYLCILRNP 124 (176)
T ss_dssp SCCCC-CGGGGGGGGG-CTTCCEEECCSSG
T ss_pred CCcCC-cchhhHhhhc-CCCCCEEEecCCC
Confidence 55553 3343 2322 3445555555554
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.98 E-value=1.4e-10 Score=120.97 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=90.9
Q ss_pred eEeEEEccCCCCcccCCccccCC-----CcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCC--Ccccc--cCC
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IPESL--GQL 530 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~--iP~~l--~~l 530 (663)
.++.|+|++|.+++. |..+..+ ++|+.|+|++|++++..|..|+.+++|+.|+|++|++.|. +|..+ ..+
T Consensus 122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 488899999999988 8888877 8999999999999988889999999999999999998876 34455 788
Q ss_pred CCCCEEeccCCcCCc--cCCchhhhccCCCCEEeccCCCCCC
Q 006035 531 TALRRLNLNGNTLSG--RVPAALGGRLLHRASFNFTDNAGLC 570 (663)
Q Consensus 531 ~~L~~L~Ls~N~lsg--~iP~~~~~~l~~L~~l~l~~N~~lc 570 (663)
++|+.|+|++|++++ .++..+...+.+|+.|++++|....
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 242 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence 999999999999983 3444444446789999999997443
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.98 E-value=1e-09 Score=125.02 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=74.9
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|.+..|..|++|++|+.|+|++|.+++..+..|+++++|+.|+|++|.+++..|..+.++++|+.|+|+
T Consensus 100 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 179 (597)
T 3oja_B 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred CCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence 37778888888887777777888888888888888875555556778888888888888887777777888888888888
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+|.+++. +. . .+.+|+.+++++|.
T Consensus 180 ~N~l~~~-~~--~-~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 180 SNRLTHV-DL--S-LIPSLFHANVSYNL 203 (597)
T ss_dssp TSCCSBC-CG--G-GCTTCSEEECCSSC
T ss_pred CCCCCCc-Ch--h-hhhhhhhhhcccCc
Confidence 8887753 31 1 24455555555553
No 74
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.98 E-value=2.8e-10 Score=113.81 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=92.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCcc-ccccCCCCCCCCCCCcEEeCCC-CCCCCCCcccccCCCCCCEEe
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTIASLEVLDLSY-NFFNGSIPESLGQLTALRRLN 537 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~g~ip~~~~~L~~L~~LdLs~-N~l~g~iP~~l~~l~~L~~L~ 537 (663)
.++.|+|++|++++..+..|.++++|+.|+|++|. +++..+..|.++++|+.|+|++ |++++..+..+.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 58899999999998888899999999999999997 8866667899999999999998 999976667889999999999
Q ss_pred ccCCcCCccCCchhhhccCCCC---EEeccCCCCCCC
Q 006035 538 LNGNTLSGRVPAALGGRLLHRA---SFNFTDNAGLCG 571 (663)
Q Consensus 538 Ls~N~lsg~iP~~~~~~l~~L~---~l~l~~N~~lc~ 571 (663)
|++|++++ +|. +.. +.+|+ .|++++|+.+..
T Consensus 112 l~~n~l~~-lp~-~~~-l~~L~~L~~L~l~~N~~l~~ 145 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTK-VYSTDIFFILEITDNPYMTS 145 (239)
T ss_dssp EEEECCCS-CCC-CTT-CCBCCSEEEEEEESCTTCCE
T ss_pred CCCCCCcc-ccc-ccc-ccccccccEEECCCCcchhh
Confidence 99999985 776 444 56677 899999844443
No 75
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.98 E-value=7.1e-10 Score=105.56 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=90.0
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcc--cccCCCCCCEEe
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE--SLGQLTALRRLN 537 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~--~l~~l~~L~~L~ 537 (663)
.++.|+|++|.|++. ..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 488999999999986 68999999999999999999654455589999999999999996 6776 889999999999
Q ss_pred ccCCcCCccCCch----hhhccCCCCEEeccCCC
Q 006035 538 LNGNTLSGRVPAA----LGGRLLHRASFNFTDNA 567 (663)
Q Consensus 538 Ls~N~lsg~iP~~----~~~~l~~L~~l~l~~N~ 567 (663)
|++|+++ .+|.. +.. +++|+.+++++|.
T Consensus 120 l~~N~i~-~~~~~~~~~~~~-l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYK-VPQVRVLDFQKVK 151 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHH-CTTCSEETTEECC
T ss_pred ecCCCCC-CcHhHHHHHHHH-CCccceeCCCcCC
Confidence 9999998 66775 444 7889999998875
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.97 E-value=1.1e-09 Score=119.88 Aligned_cols=122 Identities=20% Similarity=0.209 Sum_probs=87.7
Q ss_pred CCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCC
Q 006035 444 PWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF 518 (663)
Q Consensus 444 ~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~ 518 (663)
.|..+.|...... ....++.|+|++|+|++..+..|.++++|+.|+|++|.+++..+..|.++++|+.|+|++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3556777642211 11247788899999888888888888888888888888887777788888888888888888
Q ss_pred CCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCC
Q 006035 519 FNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDN 566 (663)
Q Consensus 519 l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N 566 (663)
++...+..+..+++|+.|+|++|++++..+..+.. +.+|+.|++++|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~l~~~ 170 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR-IPSLRRLDLGEL 170 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTT-CTTCCEEECCCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhh-CcccCEeCCCCC
Confidence 88666667888888888888888887433323332 455555555543
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.97 E-value=4.6e-10 Score=125.32 Aligned_cols=103 Identities=20% Similarity=0.202 Sum_probs=59.1
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+.+..|..|.++++|+.|+|++|++++..|..|.++++|++|||++|+++ .+|.. .+++|++|+|++
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~ 99 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSF 99 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCS
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccC
Confidence 555666666666555555666666666666666666555555666666666666666665 45544 555666666666
Q ss_pred CcCCc-cCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSG-RVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg-~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|++++ .+|..+.. +.+|+.|++++|.
T Consensus 100 N~l~~~~~p~~~~~-l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 100 NAFDALPICKEFGN-MSQLKFLGLSTTH 126 (520)
T ss_dssp SCCSSCCCCGGGGG-CTTCCEEEEEESS
T ss_pred Cccccccchhhhcc-CCcceEEEecCcc
Confidence 66554 34555544 4455555555543
No 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.96 E-value=1e-09 Score=124.00 Aligned_cols=105 Identities=25% Similarity=0.238 Sum_probs=92.6
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+.+..|..|.++++|+.|+|++|++++..|..|.++++|++|||++|+++ .+|.. .+++|++|+|+
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS 129 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence 5889999999999888889999999999999999999888999999999999999999998 67776 88999999999
Q ss_pred CCcCCc-cCCchhhhccCCCCEEeccCCCC
Q 006035 540 GNTLSG-RVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 540 ~N~lsg-~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
+|++++ .+|..+.. +.+|+.|++++|..
T Consensus 130 ~N~l~~l~~p~~~~~-l~~L~~L~L~~n~l 158 (562)
T 3a79_B 130 FNDFDVLPVCKEFGN-LTKLTFLGLSAAKF 158 (562)
T ss_dssp SSCCSBCCCCGGGGG-CTTCCEEEEECSBC
T ss_pred CCCccccCchHhhcc-cCcccEEecCCCcc
Confidence 999986 45677766 77889999988863
No 79
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.96 E-value=1.4e-09 Score=125.65 Aligned_cols=114 Identities=19% Similarity=0.256 Sum_probs=91.2
Q ss_pred eEeEEEccCCCCcccCC--------ccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCC
Q 006035 460 VIDGLGLDNQGLRGFLP--------NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT 531 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p--------~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~ 531 (663)
.++.|+|++|.+++..+ ..|.++++|+.|+|++|+++...+..|.++++|+.|||++|++++..+..+.+++
T Consensus 505 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 584 (680)
T 1ziw_A 505 KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584 (680)
T ss_dssp TCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCC
Confidence 37778888888876421 2377888888888888888844344688999999999999999966666778999
Q ss_pred CCCEEeccCCcCCccCCchhhhccCCCCEEeccCCCCCCCCC
Q 006035 532 ALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 573 (663)
Q Consensus 532 ~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~p 573 (663)
+|+.|+|++|++++..|..+...+.+|+.+++++|++.|.++
T Consensus 585 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 585 SLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred CCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 999999999999976666555346889999999999999864
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.96 E-value=1.3e-09 Score=114.49 Aligned_cols=122 Identities=19% Similarity=0.216 Sum_probs=98.6
Q ss_pred CCCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCC
Q 006035 443 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 517 (663)
Q Consensus 443 ~~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N 517 (663)
|.|..+.|...... ....++.|+|++|.+.+..|..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 46888888643211 1125889999999999988889999999999999999999888999999999999999999
Q ss_pred CCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 518 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 518 ~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
+++ .+|..+. ++|++|+|++|++++..+..+.. +.+|+.|++++|..
T Consensus 113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSG-LRNMNCIEMGGNPL 159 (332)
T ss_dssp CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSS-CSSCCEEECCSCCC
T ss_pred cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCC-CccCCEEECCCCcc
Confidence 998 7776655 78999999999998443333443 77888888888864
No 81
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.96 E-value=7.7e-10 Score=107.37 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=88.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+++..+..+..|++|+.|+|++|.+++..|..+..+++|+.|+|++|.+.+.+| .+..+++|+.|+|+
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 48889999999998888899999999999999999998888889999999999999998444677 68889999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+|++++ ++ .+.. +++|+.|++++|+
T Consensus 168 ~n~i~~-~~-~l~~-l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 168 FDGVHD-YR-GIED-FPKLNQLYAFSQT 192 (197)
T ss_dssp TBCCCC-CT-TGGG-CSSCCEEEECBC-
T ss_pred CCCCcC-hH-Hhcc-CCCCCEEEeeCcc
Confidence 999985 44 4444 6889999999987
No 82
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.96 E-value=1.6e-09 Score=116.38 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=82.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+.+..|..|.++++|+.|+|++|.++...+..|.++++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 94 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 173 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC
T ss_pred CcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC
Confidence 48889999999988888888999999999999999984444446889999999999999988778888889999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+|++++. + +. .+.+|+.+++++|.
T Consensus 174 ~n~l~~~-~--~~-~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 174 SNRLTHV-D--LS-LIPSLFHANVSYNL 197 (390)
T ss_dssp SSCCSBC-C--GG-GCTTCSEEECCSSC
T ss_pred CCcCCcc-c--cc-cccccceeeccccc
Confidence 9998853 3 22 24566666666664
No 83
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.96 E-value=1.3e-09 Score=125.90 Aligned_cols=105 Identities=20% Similarity=0.249 Sum_probs=49.2
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|+++++|+.|+|++|++++..+..++++++|++|+|++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 44555555555554444455555555555555555544444444444555555554444432223344444444444444
Q ss_pred CcCCccCCchhhhccCCCCEEeccCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDN 566 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N 566 (663)
|++++..|..+.. +.+|+.|++++|
T Consensus 107 n~l~~~~~~~~~~-l~~L~~L~Ls~n 131 (680)
T 1ziw_A 107 NSIQKIKNNPFVK-QKNLITLDLSHN 131 (680)
T ss_dssp SCCCCCCSCTTTT-CTTCCEEECCSS
T ss_pred CccCccChhHccc-cCCCCEEECCCC
Confidence 4444332333332 344444444444
No 84
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.95 E-value=9.3e-10 Score=124.55 Aligned_cols=101 Identities=27% Similarity=0.332 Sum_probs=89.3
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCC-cccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSI-PESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~i-P~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.|+ .+|..|+.|++|+.|+|++|.|++ +| .++.|++|+.|+|++|++++.. |..++.+++|+.|+|
T Consensus 464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 4889999999999 889999999999999999999997 67 8999999999999999999887 999999999999999
Q ss_pred cCCcCCccCCch--hhhccCCCCEEec
Q 006035 539 NGNTLSGRVPAA--LGGRLLHRASFNF 563 (663)
Q Consensus 539 s~N~lsg~iP~~--~~~~l~~L~~l~l 563 (663)
++|++++..|.. +...+++|+.|++
T Consensus 541 ~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 541 QGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999765532 2334678887753
No 85
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.95 E-value=1.9e-09 Score=113.02 Aligned_cols=121 Identities=20% Similarity=0.253 Sum_probs=89.4
Q ss_pred CCCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCC
Q 006035 443 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN 517 (663)
Q Consensus 443 ~~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N 517 (663)
|.|..+.|...... ....++.|+|++|++++..+..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 46888888643211 1235788999999999988889999999999999999999888999999999999999999
Q ss_pred CCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 518 FFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 518 ~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+++ .+|..+. ++|+.|++++|++++..+..+.. +.+|+.|++++|.
T Consensus 111 ~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~ 156 (330)
T 1xku_A 111 QLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNG-LNQMIVVELGTNP 156 (330)
T ss_dssp CCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTT-CTTCCEEECCSSC
T ss_pred cCC-ccChhhc--ccccEEECCCCcccccCHhHhcC-CccccEEECCCCc
Confidence 988 5665543 56777777777766443333333 4556666665554
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.94 E-value=1.1e-09 Score=123.56 Aligned_cols=107 Identities=28% Similarity=0.372 Sum_probs=59.2
Q ss_pred EeEEEccCCCCcccCCc-cccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 461 IDGLGLDNQGLRGFLPN-GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~-~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
++.|+|++|.+.+.+|. .+..+++|+.|+|++|++++.+|..+. ++|+.|+|++|+++ .+|..+.++++|+.|+|+
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVA 481 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECC
T ss_pred CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECC
Confidence 45555555555553443 245555555555555555555544333 45666666666665 555555566666666666
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 571 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~ 571 (663)
+|+++ .+|......+.+|+.+++++|++.|.
T Consensus 482 ~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 482 SNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 66666 45554222245566666666666554
No 87
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.94 E-value=3.5e-10 Score=133.71 Aligned_cols=108 Identities=16% Similarity=0.245 Sum_probs=89.3
Q ss_pred eEeEEEccCCCCcc-----------------cCCcccc--CCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCC-C
Q 006035 460 VIDGLGLDNQGLRG-----------------FLPNGIS--KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-F 519 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g-----------------~~p~~~~--~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~-l 519 (663)
.++.|+|++|.|+| .+|..++ +|++|+.|+|++|.+.|.+|..|++|++|+.|+|++|+ +
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l 528 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI 528 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc
Confidence 47889999999988 4888877 99999999999999999999889999999999999998 8
Q ss_pred CC-CCcccccCCC-------CCCEEeccCCcCCccCCc--hhhhccCCCCEEeccCCCCC
Q 006035 520 NG-SIPESLGQLT-------ALRRLNLNGNTLSGRVPA--ALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 520 ~g-~iP~~l~~l~-------~L~~L~Ls~N~lsg~iP~--~~~~~l~~L~~l~l~~N~~l 569 (663)
+| .+|..+++++ +|+.|+|++|+++ .+|. .+.. +.+|+.|++++|...
T Consensus 529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~-L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK-MVKLGLLDCVHNKVR 586 (876)
T ss_dssp CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT-CTTCCEEECTTSCCC
T ss_pred ccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc-CCCCCEEECCCCCcc
Confidence 88 7887665554 8888888888888 7887 6665 677888888887643
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.94 E-value=1.2e-09 Score=129.49 Aligned_cols=106 Identities=22% Similarity=0.269 Sum_probs=52.2
Q ss_pred EeEEEccCCCCcccC-CccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCccc--ccCCCCCCEEe
Q 006035 461 IDGLGLDNQGLRGFL-PNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPES--LGQLTALRRLN 537 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~-p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~--l~~l~~L~~L~ 537 (663)
++.|+|++|.+.+.+ |..|.+|++|+.|+|++|.+++..|..|.++++|+.|+|++|.+++.+|.. +.++++|+.|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 444444444333333 334555555555555555555555555555555555555555555444433 55555555555
Q ss_pred ccCCcCCccCCc-hhhhccCCCCEEeccCCC
Q 006035 538 LNGNTLSGRVPA-ALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 538 Ls~N~lsg~iP~-~~~~~l~~L~~l~l~~N~ 567 (663)
|++|.+++..|. .+.. +.+|+.|++++|.
T Consensus 130 Ls~N~l~~~~~~~~~~~-L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGK-LNSLKSIDFSSNQ 159 (844)
T ss_dssp EESCCCCCCCCCGGGGT-CSSCCEEEEESSC
T ss_pred CCCCcccccccchhHhh-CCCCCEEECCCCc
Confidence 555555543332 2322 4555555555554
No 89
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.93 E-value=1.4e-10 Score=135.18 Aligned_cols=91 Identities=27% Similarity=0.445 Sum_probs=85.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.|+.|+|++|.|+ .+|..|++|++|+.|+|++|.|+ .+|..|+.|++|+.|+|++|.|+ .+|..++.+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 4888999999999 89999999999999999999999 88999999999999999999998 889999999999999999
Q ss_pred CCcCCccCCchhhh
Q 006035 540 GNTLSGRVPAALGG 553 (663)
Q Consensus 540 ~N~lsg~iP~~~~~ 553 (663)
+|+|+|.+|..+..
T Consensus 325 ~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 325 GNPLEKQFLKILTE 338 (727)
T ss_dssp TSCCCSHHHHHHHH
T ss_pred CCccCCCChHHHhh
Confidence 99999999887754
No 90
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.93 E-value=1.4e-09 Score=121.43 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=59.7
Q ss_pred EeEEEccCCCCcc--cCCccccCCCcCCcccCcCccccccCCCC-CCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEe
Q 006035 461 IDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSS-LGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLN 537 (663)
Q Consensus 461 l~~L~Ls~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~-~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~ 537 (663)
++.|+|++|.+.+ .+|..+..+++|+.|+|++|.+++.+|.. +..+++|+.|+|++|++++.+|..+. ++|+.|+
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~ 427 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLD 427 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEE
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEE
Confidence 5566666666665 44555666666666666666666544432 55556666666666666555554443 4556666
Q ss_pred ccCCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 538 LNGNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 538 Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|++|+++ .+|..+.. +.+|+.|++++|.
T Consensus 428 Ls~N~l~-~ip~~~~~-l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 428 LHSNKIK-SIPKQVVK-LEALQELNVASNQ 455 (520)
T ss_dssp CCSSCCC-CCCGGGGG-CTTCCEEECCSSC
T ss_pred CCCCccc-ccchhhhc-CCCCCEEECCCCc
Confidence 6666655 55555542 4555566665554
No 91
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.93 E-value=1.3e-09 Score=103.63 Aligned_cols=89 Identities=19% Similarity=0.279 Sum_probs=81.0
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 48899999999998877788999999999999999998777788999999999999999996666667889999999999
Q ss_pred CCcCCccCC
Q 006035 540 GNTLSGRVP 548 (663)
Q Consensus 540 ~N~lsg~iP 548 (663)
+|++++..|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 999998766
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.93 E-value=8e-10 Score=122.84 Aligned_cols=107 Identities=22% Similarity=0.195 Sum_probs=91.8
Q ss_pred eEeEEEccCCCCcccCCcccc-CCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.+++..|..+. .|++|+.|+|++|.+++..+ +..+++|+.|+|++|++++..| .+..+++|+.|+|
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~L 221 (487)
T 3oja_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISL 221 (487)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEEC
T ss_pred CCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEe
Confidence 489999999999998888886 79999999999999997733 4469999999999999996444 5889999999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCCCCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 571 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~ 571 (663)
++|.+++ +|..+.. +.+|+.+++++|+..|+
T Consensus 222 s~N~l~~-lp~~l~~-l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 222 RNNKLVL-IEKALRF-SQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCE-ECTTCCC-CTTCCEEECTTCCBCHH
T ss_pred cCCcCcc-cchhhcc-CCCCCEEEcCCCCCcCc
Confidence 9999995 7877654 67899999999998874
No 93
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.92 E-value=2.6e-09 Score=120.23 Aligned_cols=105 Identities=20% Similarity=0.327 Sum_probs=49.0
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..++++++|++|+|++
T Consensus 54 L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 133 (570)
T 2z63_A 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS
T ss_pred ceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCC
Confidence 44444444444444444444444455555554444444444444444444444444444433333344444555555555
Q ss_pred CcCCc-cCCchhhhccCCCCEEeccCC
Q 006035 541 NTLSG-RVPAALGGRLLHRASFNFTDN 566 (663)
Q Consensus 541 N~lsg-~iP~~~~~~l~~L~~l~l~~N 566 (663)
|.+++ .+|..+.. +.+|+.|++++|
T Consensus 134 n~l~~~~lp~~~~~-l~~L~~L~l~~n 159 (570)
T 2z63_A 134 NLIQSFKLPEYFSN-LTNLEHLDLSSN 159 (570)
T ss_dssp SCCCCCCCCGGGGG-CTTCCEEECTTS
T ss_pred CccceecChhhhcc-cCCCCEEeCcCC
Confidence 54443 23444433 344444444444
No 94
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.91 E-value=1.4e-09 Score=114.24 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=93.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+.+..+..+..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 4778999999999988889999999999999999999888888999999999999999999 889889999999999999
Q ss_pred CCcCCccCCchhhhc-----cCCCCEEeccCCCCCC
Q 006035 540 GNTLSGRVPAALGGR-----LLHRASFNFTDNAGLC 570 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~-----l~~L~~l~l~~N~~lc 570 (663)
+|++++..+..+... ...++.+++.+|+..+
T Consensus 273 ~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp SSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CCCCCccChhHccccccccccccccceEeecCcccc
Confidence 999985544444332 3457889999998663
No 95
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.91 E-value=2.4e-09 Score=112.27 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=95.1
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+.+..|..|..+++|+.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECC
Confidence 3888999999999998999999999999999999999888888999999999999999999 889999999999999999
Q ss_pred CCcCCccCCchhhhc-----cCCCCEEeccCCCCCC
Q 006035 540 GNTLSGRVPAALGGR-----LLHRASFNFTDNAGLC 570 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~-----l~~L~~l~l~~N~~lc 570 (663)
+|++++.-+..+... ...++.+++++|+..+
T Consensus 272 ~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp SSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 999995444444221 3567889999998654
No 96
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.91 E-value=2.1e-09 Score=122.39 Aligned_cols=107 Identities=16% Similarity=0.165 Sum_probs=82.2
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.|.+..|..|..+++|+.|+|++|.+++..|..|+.+++|+.|+|++|.+++..+..+.++++|+.|+|++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 66778888888877777888888888888888888877777778888888888888888854445567888888888888
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
|.+++..|..+.. +.+|+.|++++|..
T Consensus 157 N~l~~~~~~~~~~-l~~L~~L~L~~N~l 183 (597)
T 3oja_B 157 NNLERIEDDTFQA-TTSLQNLQLSSNRL 183 (597)
T ss_dssp SCCCBCCTTTTTT-CTTCCEEECTTSCC
T ss_pred CcCCCCChhhhhc-CCcCcEEECcCCCC
Confidence 8888766666655 67788888888763
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.90 E-value=4.7e-10 Score=117.05 Aligned_cols=110 Identities=19% Similarity=0.141 Sum_probs=88.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccC--CCCC--CCCCCCcEEeCCCCCCCC--CCc-ccccCCCC
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAI--PSSL--GTIASLEVLDLSYNFFNG--SIP-ESLGQLTA 532 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~i--p~~~--~~L~~L~~LdLs~N~l~g--~iP-~~l~~l~~ 532 (663)
.++.|+|++|.+.+..|..|.++++|+.|+|++|++.|.+ |..+ ..+++|+.|+|++|++++ .++ ..+.++++
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence 4889999999999988899999999999999999988763 3344 889999999999999983 223 33457889
Q ss_pred CCEEeccCCcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 533 LRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 533 L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
|+.|+|++|++++.+|......+.+|+.|++++|...
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 9999999999998776443333678999999999743
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.85 E-value=1.7e-09 Score=112.64 Aligned_cols=110 Identities=16% Similarity=0.105 Sum_probs=89.9
Q ss_pred eEeEEEccCCCCcccCC----ccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCC--Cc--ccccCCC
Q 006035 460 VIDGLGLDNQGLRGFLP----NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGS--IP--ESLGQLT 531 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p----~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~--iP--~~l~~l~ 531 (663)
.++.|+|++|.+.+..+ ..+..+++|+.|+|++|.+.+..|..++.+++|+.|||++|++.+. ++ ..+..++
T Consensus 118 ~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~ 197 (310)
T 4glp_A 118 ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFP 197 (310)
T ss_dssp CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSC
T ss_pred CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCC
Confidence 48889999999998766 3556899999999999999988889999999999999999998753 32 3347889
Q ss_pred CCCEEeccCCcCCccCCc---hhhhccCCCCEEeccCCCCCC
Q 006035 532 ALRRLNLNGNTLSGRVPA---ALGGRLLHRASFNFTDNAGLC 570 (663)
Q Consensus 532 ~L~~L~Ls~N~lsg~iP~---~~~~~l~~L~~l~l~~N~~lc 570 (663)
+|++|+|++|+++ .+|. .+...+.+|+.|++++|....
T Consensus 198 ~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~ 238 (310)
T 4glp_A 198 AIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRA 238 (310)
T ss_dssp CCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCC
T ss_pred CCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCc
Confidence 9999999999997 3343 233346889999999998543
No 99
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.85 E-value=2.3e-09 Score=112.01 Aligned_cols=107 Identities=21% Similarity=0.209 Sum_probs=82.9
Q ss_pred eEeEEEccCCCCcccCCcccc-CCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGIS-KLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~-~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.+.+..+..+. .+++|+.|+|++|.+++. | ....+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus 145 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 221 (317)
T 3o53_A 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221 (317)
T ss_dssp SEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEEC
T ss_pred CCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEEC
Confidence 488888888888887777664 688888888888888855 3 23358888888888888884 4555788888888888
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCCCCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNAGLCG 571 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~ 571 (663)
++|+++ .+|..+.. +.+|+.+++++|+..|+
T Consensus 222 ~~N~l~-~l~~~~~~-l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 222 RNNKLV-LIEKALRF-SQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TTSCCC-EECTTCCC-CTTCCEEECTTCCCBHH
T ss_pred cCCccc-chhhHhhc-CCCCCEEEccCCCccCc
Confidence 888888 56776654 67888888888887653
No 100
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.84 E-value=1.6e-09 Score=121.58 Aligned_cols=106 Identities=19% Similarity=0.269 Sum_probs=64.5
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCC-CCcccccCCCCCCEEecc
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNG-SIPESLGQLTALRRLNLN 539 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g-~iP~~l~~l~~L~~L~Ls 539 (663)
++.|+|++|.+.+..|..|.++++|+.|+|++|.+++..|..|+++++|+.|+|++|++++ .+|..+.++++|+.|+|+
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence 5666666666666666666666666666666666665555556666666666666666664 345556666666666666
Q ss_pred CCcCCccCCc-hhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVPA-ALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP~-~~~~~l~~L~~l~l~~N~ 567 (663)
+|++.+.+|. .+.. +.+|+.|++++|.
T Consensus 132 ~n~~~~~~~~~~~~~-l~~L~~L~L~~n~ 159 (549)
T 2z81_A 132 NVETFSEIRRIDFAG-LTSLNELEIKALS 159 (549)
T ss_dssp ESSSCCEECTTTTTT-CCEEEEEEEEETT
T ss_pred CCccccccCHhhhhc-ccccCeeeccCCc
Confidence 6664445543 3332 4555566665554
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.83 E-value=3.1e-09 Score=118.03 Aligned_cols=106 Identities=19% Similarity=0.159 Sum_probs=93.5
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCC-CCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~-~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.++.|+|++|.|++..|..++.+++|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. |. +..+++|+.|+|
T Consensus 121 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L 198 (487)
T 3oja_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDL 198 (487)
T ss_dssp SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEEC
Confidence 388999999999999999999999999999999999999888886 799999999999999965 33 446899999999
Q ss_pred cCCcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 539 NGNTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 539 s~N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
++|.+++. |..+.. +.+|+.|++++|...
T Consensus 199 s~N~l~~~-~~~~~~-l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 199 SSNKLAFM-GPEFQS-AAGVTWISLRNNKLV 227 (487)
T ss_dssp CSSCCCEE-CGGGGG-GTTCSEEECTTSCCC
T ss_pred CCCCCCCC-CHhHcC-CCCccEEEecCCcCc
Confidence 99999964 555665 789999999999743
No 102
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.81 E-value=5.5e-09 Score=112.22 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=79.1
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+.+..+..|..+++|+.|+|++|.+++..|..|+++++|+.|+|++|+++...+..+.++++|+.|+|+
T Consensus 70 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 70 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 36677788887777777777788888888888888877777777788888888888888773333345777888888888
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
+|++++..|..+.. +.+|+.|++++|..
T Consensus 150 ~n~l~~~~~~~~~~-l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 150 NNNLERIEDDTFQA-TTSLQNLQLSSNRL 177 (390)
T ss_dssp SSCCCBCCTTTTSS-CTTCCEEECCSSCC
T ss_pred CCccCccChhhccC-CCCCCEEECCCCcC
Confidence 88887655555544 66778888887763
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.81 E-value=1.6e-09 Score=112.76 Aligned_cols=104 Identities=22% Similarity=0.227 Sum_probs=72.8
Q ss_pred eEeEEEccCCCCccc--C--CccccCCCcCCcccCcCccccccCCC----CCCCCCCCcEEeCCCCCCCCCCcccccCC-
Q 006035 460 VIDGLGLDNQGLRGF--L--PNGISKLRHLQSINLSGNSIRGAIPS----SLGTIASLEVLDLSYNFFNGSIPESLGQL- 530 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~--~--p~~~~~L~~L~~L~Ls~N~l~g~ip~----~~~~L~~L~~LdLs~N~l~g~iP~~l~~l- 530 (663)
.++.|+|++|.+.+. + +..+..+++|+.|+|++|+++ .++. .+..+++|+.|||++|++++.+|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 377788888877652 2 223467777888888888776 2222 24567788888888888887777776666
Q ss_pred --CCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 531 --TALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 531 --~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
++|+.|+|++|+++ .+|..+. .+|+.|++++|..
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l 284 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRL 284 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCC
T ss_pred CcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcC
Confidence 58888888888888 6776553 5778888888863
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.80 E-value=3.2e-09 Score=106.07 Aligned_cols=104 Identities=15% Similarity=0.247 Sum_probs=56.6
Q ss_pred EeEEEccCCC-CcccCCccccCCCcCCcccCcC-ccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCC---E
Q 006035 461 IDGLGLDNQG-LRGFLPNGISKLRHLQSINLSG-NSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR---R 535 (663)
Q Consensus 461 l~~L~Ls~n~-l~g~~p~~~~~L~~L~~L~Ls~-N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~---~ 535 (663)
++.|+|++|. ++...+..|.++++|+.|+|++ |.+++..+..|.++++|+.|+|++|++++ +|+ +..+++|+ .
T Consensus 57 L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~ 134 (239)
T 2xwt_C 57 ISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFI 134 (239)
T ss_dssp CCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEE
T ss_pred CcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccE
Confidence 5556666664 5554444556666666666665 56654444555556666666666666653 444 55555555 5
Q ss_pred EeccCC-cCCccCCchhhhccCCCC-EEeccCCC
Q 006035 536 LNLNGN-TLSGRVPAALGGRLLHRA-SFNFTDNA 567 (663)
Q Consensus 536 L~Ls~N-~lsg~iP~~~~~~l~~L~-~l~l~~N~ 567 (663)
|+|++| ++++..+..+.. +.+|+ .+++++|.
T Consensus 135 L~l~~N~~l~~i~~~~~~~-l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 135 LEITDNPYMTSIPVNAFQG-LCNETLTLKLYNNG 167 (239)
T ss_dssp EEEESCTTCCEECTTTTTT-TBSSEEEEECCSCC
T ss_pred EECCCCcchhhcCcccccc-hhcceeEEEcCCCC
Confidence 666666 555322222332 45555 56655554
No 105
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.77 E-value=4.2e-09 Score=111.57 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=52.5
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcc--cccCCCCCCEEec
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE--SLGQLTALRRLNL 538 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~--~l~~l~~L~~L~L 538 (663)
++.|+|++|.+++..|..|.++++|+.|+|++|++++..+..+.++++|+.|+|++|+++ .+|. .+.++++|+.|++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEE
T ss_pred CCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEEC
Confidence 455555555555555555555555555555555555333333555555555555555555 2332 4555555555555
Q ss_pred cCCc-CCccCCchhhhccCCCCEEeccCCC
Q 006035 539 NGNT-LSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 539 s~N~-lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
++|+ +.+..|..+.. +.+|+.|++++|.
T Consensus 157 ~~n~~~~~~~~~~~~~-l~~L~~L~l~~n~ 185 (353)
T 2z80_A 157 GNMDTFTKIQRKDFAG-LTFLEELEIDASD 185 (353)
T ss_dssp EESSSCCEECTTTTTT-CCEEEEEEEEETT
T ss_pred CCCccccccCHHHccC-CCCCCEEECCCCC
Confidence 5553 33222233332 3445555555543
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.74 E-value=9.8e-09 Score=107.22 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=91.4
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCC-CCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG-TIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~-~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+. .+++|+.|+|++|++++. |. ...+++|+.|+|+
T Consensus 122 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls 199 (317)
T 3o53_A 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLS 199 (317)
T ss_dssp CEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECC
T ss_pred CCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECC
Confidence 88999999999998888999999999999999999988777764 799999999999999854 43 3458999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
+|++++ +|..+.. +.+|+.|++++|...
T Consensus 200 ~N~l~~-l~~~~~~-l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 200 SNKLAF-MGPEFQS-AAGVTWISLRNNKLV 227 (317)
T ss_dssp SSCCCE-ECGGGGG-GTTCSEEECTTSCCC
T ss_pred CCcCCc-chhhhcc-cCcccEEECcCCccc
Confidence 999995 5666665 789999999999744
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.73 E-value=7.7e-09 Score=116.81 Aligned_cols=90 Identities=24% Similarity=0.336 Sum_probs=61.1
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.|+ .+| ..+++|+.|+|++|+|++ +|. +.+ +|+.|+|++|++++ +|. .+++|+.|+|++
T Consensus 82 L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 82 ITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADN 149 (571)
T ss_dssp CSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCC
Confidence 566666666666 445 346677777777777775 665 554 77777777777775 665 567788888888
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|++++ +|. .+.+|+.|++++|.
T Consensus 150 N~l~~-lp~----~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 150 NQLTM-LPE----LPTSLEVLSVRNNQ 171 (571)
T ss_dssp SCCSC-CCC----CCTTCCEEECCSSC
T ss_pred CccCc-CCC----cCCCcCEEECCCCC
Confidence 88875 665 24566666666665
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.71 E-value=1.9e-08 Score=103.95 Aligned_cols=99 Identities=29% Similarity=0.487 Sum_probs=68.9
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+.+. +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCC
Confidence 66777777777763 4567777777777777777754 467777777777777777775444 67777777777777
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
|++++ +|. +.. +.+|+.|++++|+.
T Consensus 188 N~i~~-l~~-l~~-l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 188 NHISD-LRA-LAG-LKNLDVLELFSQEC 212 (291)
T ss_dssp SCCCB-CGG-GTT-CTTCSEEEEEEEEE
T ss_pred CcCCC-Chh-hcc-CCCCCEEECcCCcc
Confidence 77773 443 433 56777777777753
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.68 E-value=4.9e-08 Score=99.28 Aligned_cols=99 Identities=22% Similarity=0.309 Sum_probs=75.9
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|++..+ +..+++|+.|+|++|++++ +|... . ++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus 64 ~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls 136 (263)
T 1xeu_A 64 NLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIR 136 (263)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECT
T ss_pred CCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECC
Confidence 37889999999887655 8888999999999999885 44332 2 788888888888885 34 47888888888888
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
+|++++ +| .+.. +.+|+.|++++|..
T Consensus 137 ~N~i~~-~~-~l~~-l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 137 NNKLKS-IV-MLGF-LSKLEVLDLHGNEI 162 (263)
T ss_dssp TSCCCB-CG-GGGG-CTTCCEEECTTSCC
T ss_pred CCcCCC-Ch-HHcc-CCCCCEEECCCCcC
Confidence 888885 34 3444 67788888888864
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.67 E-value=4.6e-08 Score=100.99 Aligned_cols=98 Identities=30% Similarity=0.428 Sum_probs=49.2
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+.+. +.+..+++|+.|+|++|++++. +.+..+++|+.|+|++|++++. ..+..+++|+.|+|++
T Consensus 92 L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 165 (291)
T 1h6t_A 92 LGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 165 (291)
T ss_dssp CCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred CCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccC
Confidence 44455555554441 2245555555555555555432 2345555555555555555532 3455555555555555
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|++++..| +.. +.+|+.|++++|.
T Consensus 166 N~l~~~~~--l~~-l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 166 NQISDIVP--LAG-LTKLQNLYLSKNH 189 (291)
T ss_dssp SCCCCCGG--GTT-CTTCCEEECCSSC
T ss_pred Cccccchh--hcC-CCccCEEECCCCc
Confidence 55553322 322 4555666666554
No 111
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.67 E-value=2.1e-08 Score=105.55 Aligned_cols=100 Identities=26% Similarity=0.373 Sum_probs=46.8
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|++++|.+.+. +.+..+++|+.|+|++|.+++. +.+..+++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus 245 L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 245 LTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred CCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 44455555544432 2344455555555555555432 2344455555555555555544444445555555555555
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|++++..| +.. ++.|+.+++++|+
T Consensus 321 n~l~~~~~--~~~-l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 321 NHITDIRP--LAS-LSKMDSADFANQV 344 (347)
T ss_dssp SSCCCCGG--GGG-CTTCSEESSSCC-
T ss_pred CccccccC--hhh-hhccceeehhhhc
Confidence 55543333 222 3445555555443
No 112
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.66 E-value=4.1e-08 Score=102.18 Aligned_cols=99 Identities=22% Similarity=0.328 Sum_probs=61.1
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+++..+ +..+++|+.|+|++|.+++..+ +..+++|+.|+|++|++++..+ +..+++|+.|+|++
T Consensus 131 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 131 LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204 (308)
T ss_dssp CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTT
T ss_pred CCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccC
Confidence 6666777766665433 6666667777777776664322 6666677777777777664332 56666777777777
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
|++++..| +.. +.+|+.|++++|+.
T Consensus 205 N~l~~~~~--l~~-l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 205 NQISDVSP--LAN-TSNLFIVTLTNQTI 229 (308)
T ss_dssp SCCCBCGG--GTT-CTTCCEEEEEEEEE
T ss_pred CccCcccc--ccC-CCCCCEEEccCCee
Confidence 77664332 332 55666777766653
No 113
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.64 E-value=6.2e-08 Score=100.78 Aligned_cols=98 Identities=26% Similarity=0.433 Sum_probs=46.9
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+.+. +.+..+++|+.|+|++|.+++ ++ .+..+++|+.|+|++|++++..+ +..+++|+.|+|++
T Consensus 87 L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 87 ITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGN 160 (308)
T ss_dssp CCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCS
T ss_pred CCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccC
Confidence 44455555554432 234455555555555555543 22 14555555555555555553222 44555555555555
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|++++ ++. +.. +.+|+.|++++|.
T Consensus 161 n~l~~-~~~-l~~-l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 161 AQVSD-LTP-LAN-LSKLTTLKADDNK 184 (308)
T ss_dssp SCCCC-CGG-GTT-CTTCCEEECCSSC
T ss_pred CcCCC-Chh-hcC-CCCCCEEECCCCc
Confidence 55553 222 222 4455555555554
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.64 E-value=4.1e-08 Score=111.79 Aligned_cols=99 Identities=29% Similarity=0.488 Sum_probs=74.4
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.|+.|+|++|.|.+. +.+..|++|+.|+|++|.+++. ..+..|++|+.|+|++|++++..| +..+++|+.|+|+
T Consensus 110 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 183 (605)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence 377788888888763 4577888888888888888754 567788888888888888886655 7788888888888
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+|++++ +| .+.. +.+|+.|++++|+
T Consensus 184 ~N~i~~-l~-~l~~-l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 184 KNHISD-LR-ALAG-LKNLDVLELFSQE 208 (605)
T ss_dssp SSCCCB-CG-GGTT-CTTCSEEECCSEE
T ss_pred CCCCCC-Ch-HHcc-CCCCCEEEccCCc
Confidence 888875 34 3444 6778888887775
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.63 E-value=5.6e-08 Score=110.73 Aligned_cols=99 Identities=30% Similarity=0.435 Sum_probs=74.1
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.|+.|+|++|.|.+. +.+..|++|+.|+|++|.+++ + +.+..|++|+.|+|++|++++. ..+..+++|+.|+|+
T Consensus 88 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 88 NLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE 161 (605)
T ss_dssp TCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred CCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence 367777777777652 367777778888888888775 3 3577788888888888888754 567788888888888
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
+|++++..| +.. +.+|+.|++++|.
T Consensus 162 ~N~l~~~~~--l~~-l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 162 DNQISDIVP--LAG-LTKLQNLYLSKNH 186 (605)
T ss_dssp SSCCCCCGG--GTT-CTTCCEEECCSSC
T ss_pred CCcCCCchh--hcc-CCCCCEEECcCCC
Confidence 888886655 444 6788889988885
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.62 E-value=5.8e-08 Score=109.61 Aligned_cols=94 Identities=24% Similarity=0.353 Sum_probs=44.9
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCC-------
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTAL------- 533 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L------- 533 (663)
++.|+|++|.|++ +|. .+++|+.|+|++|.|++ +|. |. ++|+.|+|++|+|+ .+|. +.. +|
T Consensus 142 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L 209 (571)
T 3cvr_A 142 LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETE 209 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CC
T ss_pred ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccc
Confidence 4445555555554 333 34455555555555553 444 33 45555555555555 4444 332 34
Q ss_pred CEEeccCCcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 534 RRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 534 ~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
+.|+|++|+++ .+|..+.. +.+|+.|++++|+.
T Consensus 210 ~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 210 IFFRCRENRIT-HIPENILS-LDPTCTIILEDNPL 242 (571)
T ss_dssp EEEECCSSCCC-CCCGGGGG-SCTTEEEECCSSSC
T ss_pred eEEecCCCcce-ecCHHHhc-CCCCCEEEeeCCcC
Confidence 55555555555 34554444 44555555555543
No 117
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.60 E-value=7.6e-08 Score=101.29 Aligned_cols=104 Identities=21% Similarity=0.357 Sum_probs=90.0
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+.+..+ +..+++|+.|+|++|.+++. +.+..+++|+.|+|++|++++. | .+..+++|+.|+|+
T Consensus 222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNNLSQLNSLFLN 295 (347)
T ss_dssp TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECC
T ss_pred cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcCCCCCCEEECc
Confidence 48889999999987554 89999999999999999863 4688999999999999999964 4 58889999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC 570 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc 570 (663)
+|++++..|..+.. +++|+.|++++|+..+
T Consensus 296 ~n~l~~~~~~~l~~-l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 296 NNQLGNEDMEVIGG-LTNLTTLFLSQNHITD 325 (347)
T ss_dssp SSCCCGGGHHHHHT-CTTCSEEECCSSSCCC
T ss_pred CCcCCCcChhHhhc-cccCCEEEccCCcccc
Confidence 99999887777766 7899999999998544
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.59 E-value=1.1e-07 Score=96.64 Aligned_cols=99 Identities=24% Similarity=0.334 Sum_probs=83.7
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|++++|+++. ++ .+..+++|+.|+|++|++++..+ +..+++|+.|+|++|++++ +|... . ++|+.|+|+
T Consensus 42 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~ 114 (263)
T 1xeu_A 42 GVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLD 114 (263)
T ss_dssp TCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECC
T ss_pred cCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEcc
Confidence 37889999999985 44 78999999999999999996554 9999999999999999995 55433 3 899999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
+|++++ +| .+.. +.+|+.|++++|..
T Consensus 115 ~N~l~~-~~-~l~~-l~~L~~L~Ls~N~i 140 (263)
T 1xeu_A 115 NNELRD-TD-SLIH-LKNLEILSIRNNKL 140 (263)
T ss_dssp SSCCSB-SG-GGTT-CTTCCEEECTTSCC
T ss_pred CCccCC-Ch-hhcC-cccccEEECCCCcC
Confidence 999996 44 3544 78999999999973
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.59 E-value=4.5e-10 Score=109.13 Aligned_cols=103 Identities=21% Similarity=0.305 Sum_probs=72.1
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+.+ +| .+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .+..+++|+.|+|+
T Consensus 49 ~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 49 ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEES
T ss_pred CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECC
Confidence 36777777777776 55 7777777888888888777 566666667777888888887774 45 46677777888888
Q ss_pred CCcCCccCCc--hhhhccCCCCEEeccCCCCC
Q 006035 540 GNTLSGRVPA--ALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 540 ~N~lsg~iP~--~~~~~l~~L~~l~l~~N~~l 569 (663)
+|++++ +|. .+.. +.+|+.+++++|+..
T Consensus 124 ~N~i~~-~~~~~~l~~-l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 124 NNKITN-WGEIDKLAA-LDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEECCC-HHHHHHHTT-TTTCSEEEECSCHHH
T ss_pred CCcCCc-hhHHHHHhc-CCCCCEEEecCCccc
Confidence 877773 232 3333 567777777777643
No 120
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.58 E-value=1.2e-07 Score=104.48 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=81.2
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+++. | ++.+++|+.|+|++|.+++. | ++++++|+.|+|++|++++ +| ++.+++|+.|+++
T Consensus 65 ~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 65 GLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECT
T ss_pred CCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECC
Confidence 488899999999885 3 88899999999999999874 3 8899999999999999986 45 8889999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC 570 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc 570 (663)
+|++++ +| +.. +.+|+.|++++|....
T Consensus 136 ~N~l~~-l~--l~~-l~~L~~L~l~~n~~~~ 162 (457)
T 3bz5_A 136 RNTLTE-ID--VSH-NTQLTELDCHLNKKIT 162 (457)
T ss_dssp TSCCSC-CC--CTT-CTTCCEEECTTCSCCC
T ss_pred CCccce-ec--ccc-CCcCCEEECCCCCccc
Confidence 999986 44 433 6789999999986443
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.57 E-value=3.7e-08 Score=104.38 Aligned_cols=106 Identities=17% Similarity=0.097 Sum_probs=85.8
Q ss_pred CCCCCcccccCCCC-----ccceEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCC-CCCCCCCCcE-EeCC
Q 006035 443 HPWSGADCQFDRTS-----HKWVIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPS-SLGTIASLEV-LDLS 515 (663)
Q Consensus 443 ~~w~gv~C~~~~~~-----~~~~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~-~~~~L~~L~~-LdLs 515 (663)
|.|..+.|+..+.. -+..++.|+|++|+|+...+..|.+|++|+.|+|++|++.+.+|. .|.++++|+. ++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56888899743211 123588999999999977667899999999999999999877764 6788988775 6677
Q ss_pred CCCCCCCCcccccCCCCCCEEeccCCcCCccCC
Q 006035 516 YNFFNGSIPESLGQLTALRRLNLNGNTLSGRVP 548 (663)
Q Consensus 516 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP 548 (663)
.|+++...|..+..+++|+.|++++|++++..+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCc
Confidence 899997778889999999999999999985433
No 122
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.56 E-value=6.9e-10 Score=107.81 Aligned_cols=102 Identities=22% Similarity=0.338 Sum_probs=84.5
Q ss_pred EeEEEccCCCCcccCCc------cccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCC
Q 006035 461 IDGLGLDNQGLRGFLPN------GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALR 534 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~------~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~ 534 (663)
++.++++.+.+.|.+|. .+..+++|+.|+|++|.+++ +| .+..+++|+.|+|++|+++ .+|..+..+++|+
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~ 96 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE 96 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence 44456666667776666 89999999999999999996 77 8899999999999999998 7888777888999
Q ss_pred EEeccCCcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 535 RLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 535 ~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
.|+|++|++++ +| .+.. +.+|+.|++++|..
T Consensus 97 ~L~L~~N~l~~-l~-~~~~-l~~L~~L~l~~N~i 127 (198)
T 1ds9_A 97 ELWISYNQIAS-LS-GIEK-LVNLRVLYMSNNKI 127 (198)
T ss_dssp EEEEEEEECCC-HH-HHHH-HHHSSEEEESEEEC
T ss_pred EEECcCCcCCc-CC-cccc-CCCCCEEECCCCcC
Confidence 99999999985 55 4554 67899999999864
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.55 E-value=6.8e-08 Score=106.35 Aligned_cols=102 Identities=26% Similarity=0.358 Sum_probs=80.6
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.+.+..+ +..+++|+.|+|++|.+++..| +..+++|+.|++++|++++. ..+.++++|+.|+|+
T Consensus 288 ~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAG 361 (466)
T ss_dssp TCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECC
T ss_pred ccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCC
Confidence 37788888888887544 7788888888888888887665 67888888888888888864 467888888999999
Q ss_pred CCcCCccCCchhhhccCCCCEEeccCCCCCC
Q 006035 540 GNTLSGRVPAALGGRLLHRASFNFTDNAGLC 570 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc 570 (663)
+|++++..| +.. +..|+.|++++|+..+
T Consensus 362 ~n~l~~~~~--~~~-l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 362 HNQISDLTP--LAN-LTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCCBCGG--GTT-CTTCCEEECCCEEEEC
T ss_pred CCccCccch--hhc-CCCCCEEeccCCcccC
Confidence 898887766 433 6788888888887543
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.55 E-value=9.4e-09 Score=110.26 Aligned_cols=110 Identities=16% Similarity=0.297 Sum_probs=93.5
Q ss_pred eEeEEEccCCCCc--c---cCCccccCCCcCCcccCcCcccc----ccCCCCCCCCCCCcEEeCCCCCCCCC----Cccc
Q 006035 460 VIDGLGLDNQGLR--G---FLPNGISKLRHLQSINLSGNSIR----GAIPSSLGTIASLEVLDLSYNFFNGS----IPES 526 (663)
Q Consensus 460 ~l~~L~Ls~n~l~--g---~~p~~~~~L~~L~~L~Ls~N~l~----g~ip~~~~~L~~L~~LdLs~N~l~g~----iP~~ 526 (663)
.++.|+|++|.+. | .+|..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++. +|..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 4889999999998 3 45558889999999999999996 67888899999999999999999865 5666
Q ss_pred c--cCCCCCCEEeccCCcCCc----cCCchhhhccCCCCEEeccCCCCC
Q 006035 527 L--GQLTALRRLNLNGNTLSG----RVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 527 l--~~l~~L~~L~Ls~N~lsg----~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
+ +.+++|+.|+|++|++++ .+|..+...+++|+.|++++|+..
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 6 448999999999999997 488887555789999999999743
No 125
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.53 E-value=1.6e-07 Score=103.44 Aligned_cols=99 Identities=23% Similarity=0.362 Sum_probs=58.0
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|+|++|.+.+..+ +..+++|+.|+|++|++.+..+ +..+++|+.|+|++|++++..| +..+++|+.|++++
T Consensus 267 L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 340 (466)
T 1o6v_A 267 LTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCS
T ss_pred CCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCC
Confidence 5556666666655433 5566666666666666664433 5566666666666666665444 45666666666666
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
|++++. ..+.. +.+|+.|++++|+.
T Consensus 341 n~l~~~--~~l~~-l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 341 NKVSDV--SSLAN-LTNINWLSAGHNQI 365 (466)
T ss_dssp SCCCCC--GGGTT-CTTCCEEECCSSCC
T ss_pred CccCCc--hhhcc-CCCCCEEeCCCCcc
Confidence 666643 23333 45666666666653
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.51 E-value=2.2e-08 Score=104.90 Aligned_cols=104 Identities=19% Similarity=0.162 Sum_probs=61.4
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCcccccc-CCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGA-IPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~-ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
++.|++++|.+.+..+. +..+++|+.|+|++|.+++. +|..+..+++|+.|+|++|++++..|..++++++|+.|+|+
T Consensus 72 l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~ 150 (336)
T 2ast_B 72 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150 (336)
T ss_dssp CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred ceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECC
Confidence 55666666666655444 34566666666666666554 55556666666666666666665556666666666666666
Q ss_pred CC-cCCcc-CCchhhhccCCCCEEeccCC
Q 006035 540 GN-TLSGR-VPAALGGRLLHRASFNFTDN 566 (663)
Q Consensus 540 ~N-~lsg~-iP~~~~~~l~~L~~l~l~~N 566 (663)
+| .+++. +|..+.. +++|+.|++++|
T Consensus 151 ~~~~l~~~~l~~~~~~-~~~L~~L~l~~~ 178 (336)
T 2ast_B 151 GCSGFSEFALQTLLSS-CSRLDELNLSWC 178 (336)
T ss_dssp TCBSCCHHHHHHHHHH-CTTCCEEECCCC
T ss_pred CCCCCCHHHHHHHHhc-CCCCCEEcCCCC
Confidence 66 45542 3333333 455666666665
No 127
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.50 E-value=8.9e-09 Score=107.87 Aligned_cols=84 Identities=24% Similarity=0.283 Sum_probs=42.3
Q ss_pred EeEEEccCCCCccc-CCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCC-CCCC-CCcccccCCCCCCEEe
Q 006035 461 IDGLGLDNQGLRGF-LPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYN-FFNG-SIPESLGQLTALRRLN 537 (663)
Q Consensus 461 l~~L~Ls~n~l~g~-~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N-~l~g-~iP~~l~~l~~L~~L~ 537 (663)
++.|+|++|.+.+. ++..+..+++|+.|+|++|.+++..+..++.+++|+.|+|++| .+++ .+|..+.++++|+.|+
T Consensus 95 L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 95 VQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp CCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 45555555555443 4444555555555555555555444445555555555555555 3443 1344444445555555
Q ss_pred ccCC-cCC
Q 006035 538 LNGN-TLS 544 (663)
Q Consensus 538 Ls~N-~ls 544 (663)
|++| .++
T Consensus 175 l~~~~~l~ 182 (336)
T 2ast_B 175 LSWCFDFT 182 (336)
T ss_dssp CCCCTTCC
T ss_pred CCCCCCcC
Confidence 5555 444
No 128
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.45 E-value=2.8e-08 Score=105.80 Aligned_cols=109 Identities=25% Similarity=0.318 Sum_probs=75.8
Q ss_pred eEeEEEccCCCCcccCCccccCC-----CcCCcccCcCccccccCCCCCCC----C-CCCcEEeCCCCCCCCCCccccc-
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKL-----RHLQSINLSGNSIRGAIPSSLGT----I-ASLEVLDLSYNFFNGSIPESLG- 528 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L-----~~L~~L~Ls~N~l~g~ip~~~~~----L-~~L~~LdLs~N~l~g~iP~~l~- 528 (663)
.++.|+|++|.+.+..+..+..+ ++|+.|+|++|.+++..+..+.. + ++|+.|+|++|++++..+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 37788888888887777766665 78888888888888666554333 3 7888888888888766654433
Q ss_pred ---C-CCCCCEEeccCCcCCccCCchh----hhccCCCCEEeccCCCC
Q 006035 529 ---Q-LTALRRLNLNGNTLSGRVPAAL----GGRLLHRASFNFTDNAG 568 (663)
Q Consensus 529 ---~-l~~L~~L~Ls~N~lsg~iP~~~----~~~l~~L~~l~l~~N~~ 568 (663)
. .++|+.|+|++|+++..-+..+ .....+|+.|++++|..
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 3 2578888888888875433333 22223788888888863
No 129
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.45 E-value=6.3e-07 Score=98.47 Aligned_cols=94 Identities=21% Similarity=0.332 Sum_probs=45.1
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|++++|.+++ +|..+ .+|+.|+|++|.+++ +| .++++++|+.|++++|++++ +|... ++|+.|++++
T Consensus 155 L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~ 224 (454)
T 1jl5_A 155 LKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGN 224 (454)
T ss_dssp CCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCS
T ss_pred CCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcC
Confidence 4444444444443 23221 244444444444443 33 34555555555555555553 33221 3455555555
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
|+++ .+|. +.. +.+|+.|++++|.
T Consensus 225 n~l~-~lp~-~~~-l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 225 NILE-ELPE-LQN-LPFLTTIYADNNL 248 (454)
T ss_dssp SCCS-SCCC-CTT-CTTCCEEECCSSC
T ss_pred CcCC-cccc-cCC-CCCCCEEECCCCc
Confidence 5555 4553 332 5566666666665
No 130
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.43 E-value=5.7e-07 Score=98.96 Aligned_cols=80 Identities=24% Similarity=0.227 Sum_probs=67.3
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|++++|.+++ +| +..+++|+.|+|++|.+++. .++.+++|+.|+|++|++++ +| +..+++|+.|+|+
T Consensus 171 ~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~ 241 (457)
T 3bz5_A 171 QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCS 241 (457)
T ss_dssp TCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECC
T ss_pred cCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEee
Confidence 47889999999887 34 78888999999999999865 48888999999999999997 66 7888999999999
Q ss_pred CCcCCccCC
Q 006035 540 GNTLSGRVP 548 (663)
Q Consensus 540 ~N~lsg~iP 548 (663)
+|++++..+
T Consensus 242 ~N~l~~~~~ 250 (457)
T 3bz5_A 242 VNPLTELDV 250 (457)
T ss_dssp SSCCSCCCC
T ss_pred CCcCCCcCH
Confidence 999987543
No 131
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.43 E-value=5.8e-08 Score=106.83 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=46.2
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCC-------------cEEeCCCCCCCCCCccc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASL-------------EVLDLSYNFFNGSIPES 526 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L-------------~~LdLs~N~l~g~iP~~ 526 (663)
+++.|++++|++ |.+|..+++|++|+.|+|++|.+.|.+|..++++.+| +.|++++|++++ +|..
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 588899999999 8999999999999999999999999999999887754 778888887774 3431
Q ss_pred ccCCCCCCEEeccCCcCCccCCc
Q 006035 527 LGQLTALRRLNLNGNTLSGRVPA 549 (663)
Q Consensus 527 l~~l~~L~~L~Ls~N~lsg~iP~ 549 (663)
.++|+.|++++|++++ +|.
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~ 108 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPE 108 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCC
T ss_pred ---cCCCCEEEccCCcCCc-ccc
Confidence 2456666666666664 453
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.42 E-value=5.6e-07 Score=102.68 Aligned_cols=95 Identities=27% Similarity=0.309 Sum_probs=65.7
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.|++++|.++. +|. .+++|+.|+|++|.+++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|+|++
T Consensus 203 L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 203 LYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp CCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred hhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence 4555555555553 232 23667788888888775 55 45577888888888887 5665 567788888888
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAGL 569 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~l 569 (663)
|+++ .+|..+.. +++|+.|++++|+..
T Consensus 271 N~L~-~lp~~l~~-l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 271 NQLT-RLPESLIH-LSSETTVNLEGNPLS 297 (622)
T ss_dssp SCCC-SCCGGGGG-SCTTCEEECCSCCCC
T ss_pred CCCC-cCCHHHhh-ccccCEEEecCCCCC
Confidence 8888 77777665 677888888888753
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.36 E-value=7.1e-08 Score=102.61 Aligned_cols=110 Identities=24% Similarity=0.248 Sum_probs=91.4
Q ss_pred eEeEEEccCCCCcccCC----ccccCCC-cCCcccCcCccccccCCCCCCCC-----CCCcEEeCCCCCCCCCCccccc-
Q 006035 460 VIDGLGLDNQGLRGFLP----NGISKLR-HLQSINLSGNSIRGAIPSSLGTI-----ASLEVLDLSYNFFNGSIPESLG- 528 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p----~~~~~L~-~L~~L~Ls~N~l~g~ip~~~~~L-----~~L~~LdLs~N~l~g~iP~~l~- 528 (663)
.++.|+|++|.+.+..+ ..+..++ +|+.|+|++|.+++..+..+..+ ++|+.|+|++|++++..+..+.
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 38899999999998877 7788888 89999999999998877777765 9999999999999987776544
Q ss_pred ---CC-CCCCEEeccCCcCCccCCchhhhc----cCCCCEEeccCCCCC
Q 006035 529 ---QL-TALRRLNLNGNTLSGRVPAALGGR----LLHRASFNFTDNAGL 569 (663)
Q Consensus 529 ---~l-~~L~~L~Ls~N~lsg~iP~~~~~~----l~~L~~l~l~~N~~l 569 (663)
.+ ++|+.|+|++|++++..+..+... ..+|+.|++++|...
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 44 899999999999987665555442 258999999999743
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.36 E-value=4.6e-08 Score=104.85 Aligned_cols=109 Identities=17% Similarity=0.167 Sum_probs=71.0
Q ss_pred eEeEEEccCC---CCcccCCccc-------cCCCcCCcccCcCccccc----cCCCCCCCCCCCcEEeCCCCCCCCCCcc
Q 006035 460 VIDGLGLDNQ---GLRGFLPNGI-------SKLRHLQSINLSGNSIRG----AIPSSLGTIASLEVLDLSYNFFNGSIPE 525 (663)
Q Consensus 460 ~l~~L~Ls~n---~l~g~~p~~~-------~~L~~L~~L~Ls~N~l~g----~ip~~~~~L~~L~~LdLs~N~l~g~iP~ 525 (663)
.++.|+|++| .+.+.+|..+ ..+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++..+.
T Consensus 61 ~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~ 140 (386)
T 2ca6_A 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA 140 (386)
T ss_dssp TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH
T ss_pred CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH
Confidence 3677777774 4455666554 577778888888887776 4666677777888888888877643333
Q ss_pred cc----cCC---------CCCCEEeccCCcCC-ccCCch--hhhccCCCCEEeccCCCC
Q 006035 526 SL----GQL---------TALRRLNLNGNTLS-GRVPAA--LGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 526 ~l----~~l---------~~L~~L~Ls~N~ls-g~iP~~--~~~~l~~L~~l~l~~N~~ 568 (663)
.+ ..+ ++|+.|+|++|+++ +.+|.. ....+.+|+.|++++|..
T Consensus 141 ~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 141 KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 33 233 77888888888776 333331 223456778888887753
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=2e-07 Score=94.86 Aligned_cols=81 Identities=25% Similarity=0.373 Sum_probs=64.6
Q ss_pred cCCCcCCcccCcCccccc--cCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCC--CCCEEeccCCcCCccCCch-----
Q 006035 480 SKLRHLQSINLSGNSIRG--AIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLT--ALRRLNLNGNTLSGRVPAA----- 550 (663)
Q Consensus 480 ~~L~~L~~L~Ls~N~l~g--~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~--~L~~L~Ls~N~lsg~iP~~----- 550 (663)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|.+++.+|..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 567899999999999998 5667778899999999999999965 3344444 8999999999999888732
Q ss_pred -hhhccCCCCEEe
Q 006035 551 -LGGRLLHRASFN 562 (663)
Q Consensus 551 -~~~~l~~L~~l~ 562 (663)
+...+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 334477888775
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.21 E-value=1e-06 Score=93.18 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=82.4
Q ss_pred EEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcc-cccCCCCCCE-EeccC
Q 006035 463 GLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPE-SLGQLTALRR-LNLNG 540 (663)
Q Consensus 463 ~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~-~l~~l~~L~~-L~Ls~ 540 (663)
.++.++++|+ .+|..+ .++|+.|+|++|+|+...+..|.+|++|+.|+|++|++.+.+|. .+.++++|+. +.++.
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4788899998 567666 36899999999999965556799999999999999999877774 6788988876 67778
Q ss_pred CcCCccCCchhhhccCCCCEEeccCCCC
Q 006035 541 NTLSGRVPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 541 N~lsg~iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
|+++...|..+.. +.+|+.|++++|..
T Consensus 90 N~l~~l~~~~f~~-l~~L~~L~l~~n~l 116 (350)
T 4ay9_X 90 NNLLYINPEAFQN-LPNLQYLLISNTGI 116 (350)
T ss_dssp TTCCEECTTSBCC-CTTCCEEEEEEECC
T ss_pred CcccccCchhhhh-cccccccccccccc
Confidence 9999655555554 78899999988863
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.16 E-value=1.6e-06 Score=98.97 Aligned_cols=85 Identities=31% Similarity=0.402 Sum_probs=75.8
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
.++.|+|++|.|++ +| ..+++|+.|+|++|.|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|+
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 38889999999997 55 55689999999999999 5676 6789999999999999 889999999999999999
Q ss_pred CCcCCccCCchhhh
Q 006035 540 GNTLSGRVPAALGG 553 (663)
Q Consensus 540 ~N~lsg~iP~~~~~ 553 (663)
+|+++|.+|..+..
T Consensus 293 ~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 293 GNPLSERTLQALRE 306 (622)
T ss_dssp SCCCCHHHHHHHHH
T ss_pred CCCCCCcCHHHHHh
Confidence 99999998887654
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.02 E-value=2.6e-07 Score=101.03 Aligned_cols=83 Identities=24% Similarity=0.199 Sum_probs=39.0
Q ss_pred cCCcccCcCcccccc----CCCCCCCCCCCcEEeCCCCCCCCCCcccccC-----CCCCCEEeccCCcCCc----cCCch
Q 006035 484 HLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGSIPESLGQ-----LTALRRLNLNGNTLSG----RVPAA 550 (663)
Q Consensus 484 ~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~-----l~~L~~L~Ls~N~lsg----~iP~~ 550 (663)
+|+.|+|++|.+++. ++..+..+++|+.|||++|++++..+..+.. .++|+.|+|++|++++ .+|..
T Consensus 314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~ 393 (461)
T 1z7x_W 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT 393 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence 445555555554433 2333344455555555555554333322221 3455555555555553 44444
Q ss_pred hhhccCCCCEEeccCCC
Q 006035 551 LGGRLLHRASFNFTDNA 567 (663)
Q Consensus 551 ~~~~l~~L~~l~l~~N~ 567 (663)
+.. +++|+.|++++|+
T Consensus 394 l~~-~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 394 LLA-NHSLRELDLSNNC 409 (461)
T ss_dssp HHH-CCCCCEEECCSSS
T ss_pred HHh-CCCccEEECCCCC
Confidence 433 4455555555554
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.94 E-value=3.9e-07 Score=99.59 Aligned_cols=108 Identities=19% Similarity=0.110 Sum_probs=72.7
Q ss_pred eEeEEEccCCCCccc----CCccccCCCcCCcccCcCccccccCCCCCCC-----CCCCcEEeCCCCCCCCC----Cccc
Q 006035 460 VIDGLGLDNQGLRGF----LPNGISKLRHLQSINLSGNSIRGAIPSSLGT-----IASLEVLDLSYNFFNGS----IPES 526 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~----~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~-----L~~L~~LdLs~N~l~g~----iP~~ 526 (663)
.++.|+|++|.++.. ++..+..+++|+.|+|++|.+++..+..+.. .++|+.|+|++|.+++. +|..
T Consensus 257 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 336 (461)
T 1z7x_W 257 RLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV 336 (461)
T ss_dssp CCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred CceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH
Confidence 367788888877764 5666677778888888888776543333322 25788888888887754 4555
Q ss_pred ccCCCCCCEEeccCCcCCccCCchhhhc----cCCCCEEeccCCC
Q 006035 527 LGQLTALRRLNLNGNTLSGRVPAALGGR----LLHRASFNFTDNA 567 (663)
Q Consensus 527 l~~l~~L~~L~Ls~N~lsg~iP~~~~~~----l~~L~~l~l~~N~ 567 (663)
+..+++|+.|+|++|++++..+..+... ...|+.|++++|.
T Consensus 337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 6677888888888888775544444332 3467888888775
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.83 E-value=5.4e-06 Score=84.18 Aligned_cols=76 Identities=28% Similarity=0.327 Sum_probs=64.1
Q ss_pred eEeEEEccCCCCcc--cCCccccCCCcCCcccCcCccccccCCCCCCCCC--CCcEEeCCCCCCCCCCcc-------ccc
Q 006035 460 VIDGLGLDNQGLRG--FLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIA--SLEVLDLSYNFFNGSIPE-------SLG 528 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g--~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~--~L~~LdLs~N~l~g~iP~-------~l~ 528 (663)
.++.|+|++|.|++ .+|..+..+++|+.|+|++|+|++. ..+..+. .|+.|+|++|.+++.+|+ .+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 48899999999998 6677888999999999999999975 3344454 999999999999988773 367
Q ss_pred CCCCCCEEe
Q 006035 529 QLTALRRLN 537 (663)
Q Consensus 529 ~l~~L~~L~ 537 (663)
.+++|+.||
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 789999886
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.81 E-value=2.1e-06 Score=91.82 Aligned_cols=109 Identities=18% Similarity=0.147 Sum_probs=75.0
Q ss_pred eEeEEEccCCCCcccCCccc-----cCCCcCCcccCcCcccccc----CCCCCCCCCCCcEEeCCCCCCCCC----Cccc
Q 006035 460 VIDGLGLDNQGLRGFLPNGI-----SKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPES 526 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~-----~~L~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~l~g~----iP~~ 526 (663)
.++.|+|++|.|...-...+ ...+.|+.|+|++|.++.. ++..+..++.|+.|||++|.++.. ++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 37788888888765433333 2357788889998888642 344456778899999999988742 3455
Q ss_pred ccCCCCCCEEeccCCcCCccCCchhhh---ccCCCCEEeccCCCC
Q 006035 527 LGQLTALRRLNLNGNTLSGRVPAALGG---RLLHRASFNFTDNAG 568 (663)
Q Consensus 527 l~~l~~L~~L~Ls~N~lsg~iP~~~~~---~l~~L~~l~l~~N~~ 568 (663)
+...++|+.|+|++|.++..-...+.. ..+.|+.|++++|+.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 667788999999999887432222222 146789999999863
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=6.3e-05 Score=78.53 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=80.7
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCc-EEeCCCCCCCCCCcccccCCCCCCEEecc
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLE-VLDLSYNFFNGSIPESLGQLTALRRLNLN 539 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~-~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls 539 (663)
++.|+|++|+++..-+..|.+|.+|+.|+|++| +...-+..|.++.+|+ .++|++ +++..-+..|.++++|+.|+|+
T Consensus 228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC
T ss_pred CeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC
Confidence 788999999998777778999999999999998 7755567899999999 999998 7774556789999999999999
Q ss_pred CCcCCccCCchhhhccCCCCEEe
Q 006035 540 GNTLSGRVPAALGGRLLHRASFN 562 (663)
Q Consensus 540 ~N~lsg~iP~~~~~~l~~L~~l~ 562 (663)
.|+++ .|+...+..+.+|+.+.
T Consensus 306 ~n~i~-~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 306 GDKIT-TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp SSCCC-EECTTTTCTTCCCCEEE
T ss_pred CCccC-ccchhhhcCCcchhhhc
Confidence 99998 55554433356676664
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.57 E-value=5.2e-06 Score=88.72 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=80.0
Q ss_pred eEeEEEccCCCCcccCCccc-cCCCcCCcccCcCccccccCCCCC-----CCCCCCcEEeCCCCCCCC----CCcccccC
Q 006035 460 VIDGLGLDNQGLRGFLPNGI-SKLRHLQSINLSGNSIRGAIPSSL-----GTIASLEVLDLSYNFFNG----SIPESLGQ 529 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~-~~L~~L~~L~Ls~N~l~g~ip~~~-----~~L~~L~~LdLs~N~l~g----~iP~~l~~ 529 (663)
.++.|+|++|.|...-...+ ..+.+|+.|+|++|.++..-...+ ...+.|+.|+|++|.++. .++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 49999999999975433333 346789999999999975443333 346789999999999874 24455678
Q ss_pred CCCCCEEeccCCcCCcc----CCchhhhccCCCCEEeccCCCC
Q 006035 530 LTALRRLNLNGNTLSGR----VPAALGGRLLHRASFNFTDNAG 568 (663)
Q Consensus 530 l~~L~~L~Ls~N~lsg~----iP~~~~~~l~~L~~l~l~~N~~ 568 (663)
+++|++|+|++|.++.. ++..+.. ..+|+.|++++|..
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~-~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDR-NRQLQELNVAYNGA 223 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGG-CSCCCEEECCSSCC
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhc-CCCcCeEECCCCCC
Confidence 89999999999999742 1223333 46899999999864
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.48 E-value=7.7e-06 Score=92.26 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=75.0
Q ss_pred EeEEEcc----CCCCccc-----CCccccCCCcCCcccCcCc--cccccCCCCCC-CCCCCcEEeCCCCCCCC-CCcccc
Q 006035 461 IDGLGLD----NQGLRGF-----LPNGISKLRHLQSINLSGN--SIRGAIPSSLG-TIASLEVLDLSYNFFNG-SIPESL 527 (663)
Q Consensus 461 l~~L~Ls----~n~l~g~-----~p~~~~~L~~L~~L~Ls~N--~l~g~ip~~~~-~L~~L~~LdLs~N~l~g-~iP~~l 527 (663)
++.|+|+ .|.+++. ++..+.++++|+.|+|+.+ .+++..+..+. .+++|+.|+|++|++++ .++..+
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 484 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH
Confidence 6667774 5666653 3344666788888888643 35555444443 37889999999998876 455566
Q ss_pred cCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 528 GQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 528 ~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
.++++|+.|+|++|++++.....+...+++|+.|++++|+
T Consensus 485 ~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 7889999999999998755344444447889999999987
No 145
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.42 E-value=1.5e-05 Score=76.20 Aligned_cols=107 Identities=17% Similarity=0.274 Sum_probs=77.5
Q ss_pred EeEEEccCC-CCcc----cCCccccCCCcCCcccCcCcccccc----CCCCCCCCCCCcEEeCCCCCCCCC----Ccccc
Q 006035 461 IDGLGLDNQ-GLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDLSYNFFNGS----IPESL 527 (663)
Q Consensus 461 l~~L~Ls~n-~l~g----~~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~l~g~----iP~~l 527 (663)
++.|+|++| .|.. .+...+...+.|+.|+|++|.+... +...+...+.|+.|+|++|.++.. +...+
T Consensus 38 L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L 117 (185)
T 1io0_A 38 LEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEAL 117 (185)
T ss_dssp CCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGG
T ss_pred CCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHH
Confidence 788999998 8864 2344566778999999999998643 233445567899999999998843 45567
Q ss_pred cCCCCCCEEec--cCCcCCccCCchhhhc---cCCCCEEeccCCC
Q 006035 528 GQLTALRRLNL--NGNTLSGRVPAALGGR---LLHRASFNFTDNA 567 (663)
Q Consensus 528 ~~l~~L~~L~L--s~N~lsg~iP~~~~~~---l~~L~~l~l~~N~ 567 (663)
...++|+.|+| ++|.+...--..+... ...|+.|++++|.
T Consensus 118 ~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 118 QSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp GGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 77789999999 8899874322222221 3678899988774
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.28 E-value=0.00026 Score=73.83 Aligned_cols=35 Identities=6% Similarity=0.139 Sum_probs=21.8
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCcccc
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR 496 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~ 496 (663)
++.|+|++ +++..-+..|.+|++|+.|+|++|.+.
T Consensus 103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred CcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc
Confidence 55666666 666555556667777777777766653
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.09 E-value=2.3e-05 Score=88.28 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=16.5
Q ss_pred CCCCcEEeCCCCCCCCCCcccc-cCCCCCCEEeccCCcC
Q 006035 506 IASLEVLDLSYNFFNGSIPESL-GQLTALRRLNLNGNTL 543 (663)
Q Consensus 506 L~~L~~LdLs~N~l~g~iP~~l-~~l~~L~~L~Ls~N~l 543 (663)
+++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 4444444444444433222222 3344444455544444
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.04 E-value=7.4e-05 Score=84.11 Aligned_cols=83 Identities=17% Similarity=0.186 Sum_probs=34.5
Q ss_pred CCCcCCcccCcCccccccCCCCC----CCCCCCcEEeCCCCCCCCCCc-c----cccCCCCCCEEeccCCcCCccCCchh
Q 006035 481 KLRHLQSINLSGNSIRGAIPSSL----GTIASLEVLDLSYNFFNGSIP-E----SLGQLTALRRLNLNGNTLSGRVPAAL 551 (663)
Q Consensus 481 ~L~~L~~L~Ls~N~l~g~ip~~~----~~L~~L~~LdLs~N~l~g~iP-~----~l~~l~~L~~L~Ls~N~lsg~iP~~~ 551 (663)
++++|+.|+|++|.+++..+..+ ..+++|+.|+|++|. +.+. . .+..+++|+.|+|++|...+.+|..+
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~ 231 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLL 231 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHH
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHH
Confidence 44555555555555443322222 234455555555554 1111 1 11233555555555542211233333
Q ss_pred hhccCCCCEEeccCC
Q 006035 552 GGRLLHRASFNFTDN 566 (663)
Q Consensus 552 ~~~l~~L~~l~l~~N 566 (663)
.. +++|+.|+++.+
T Consensus 232 ~~-~~~L~~L~l~~~ 245 (594)
T 2p1m_B 232 QR-APQLEELGTGGY 245 (594)
T ss_dssp HH-CTTCSEEECSBC
T ss_pred hc-CCcceEcccccc
Confidence 32 445555554443
No 149
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.93 E-value=0.00035 Score=78.58 Aligned_cols=102 Identities=18% Similarity=0.080 Sum_probs=57.0
Q ss_pred EeEEEccCCCCc----ccCCccccCCCcCCcccCcCccccccCCCC---------------------------CCCCCCC
Q 006035 461 IDGLGLDNQGLR----GFLPNGISKLRHLQSINLSGNSIRGAIPSS---------------------------LGTIASL 509 (663)
Q Consensus 461 l~~L~Ls~n~l~----g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~---------------------------~~~L~~L 509 (663)
++.|+|++|.++ +.++..+.++++|+.|+|++|.+.+ +|.. +..+++|
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L 272 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL 272 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence 566666666665 2333444556666666666666553 3333 4444455
Q ss_pred cEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEecc
Q 006035 510 EVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFT 564 (663)
Q Consensus 510 ~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~ 564 (663)
+.|+++++. .+.+|..+..+++|+.|+|++|.+++.....+...+++|+.|+++
T Consensus 273 ~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 273 CRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 555554432 235555566666777777777776544332322335667777666
No 150
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.81 E-value=0.0021 Score=57.61 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=31.7
Q ss_pred EEeCCCCCCC-CCCcccccCCCCCCEEeccCCcCCccCCchhhhccCCCCEEeccCCCCCCCC
Q 006035 511 VLDLSYNFFN-GSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLHRASFNFTDNAGLCGI 572 (663)
Q Consensus 511 ~LdLs~N~l~-g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~~lc~~ 572 (663)
.+|.++++|+ ..+|..+. .+|+.|+|++|+|+ .+|......+.+|+.|+|.+|++.|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCeeccC
Confidence 3445555543 23443221 24566666666665 445544444566667777777776653
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.51 E-value=0.0002 Score=68.29 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=66.8
Q ss_pred eEeEEEccCCCCcc----cCCccccCCCcCCcccCcCcccccc----CCCCCCCCCCCcEEeC--CCCCCCCC----Ccc
Q 006035 460 VIDGLGLDNQGLRG----FLPNGISKLRHLQSINLSGNSIRGA----IPSSLGTIASLEVLDL--SYNFFNGS----IPE 525 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g----~~p~~~~~L~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdL--s~N~l~g~----iP~ 525 (663)
.++.|+|++|.|.. .+...+...+.|+.|+|++|.+... +...+...+.|+.|+| ++|.++.. +..
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 48899999999964 2344566678999999999999854 4556777889999999 88998743 334
Q ss_pred cccCCCCCCEEeccCCcCC
Q 006035 526 SLGQLTALRRLNLNGNTLS 544 (663)
Q Consensus 526 ~l~~l~~L~~L~Ls~N~ls 544 (663)
.+...++|+.|+|++|.+.
T Consensus 146 ~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEeccCCCCC
Confidence 4556689999999999885
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.12 E-value=0.00064 Score=72.13 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=19.2
Q ss_pred CCCCcEEeCCCCCCCCCCccccc---CCCCCCEEeccCCcCCc
Q 006035 506 IASLEVLDLSYNFFNGSIPESLG---QLTALRRLNLNGNTLSG 545 (663)
Q Consensus 506 L~~L~~LdLs~N~l~g~iP~~l~---~l~~L~~L~Ls~N~lsg 545 (663)
+++|+.|+|++|.+....+..+. .+++|+.|+|+.|.+.+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 45555555555554432222221 34455555555555543
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.90 E-value=0.01 Score=52.96 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=21.5
Q ss_pred CCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCC
Q 006035 508 SLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLS 544 (663)
Q Consensus 508 ~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~ls 544 (663)
+|+.|+|++|+|+..-+..+..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 3556666666665433444556666666666666654
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.83 E-value=0.001 Score=62.87 Aligned_cols=83 Identities=13% Similarity=0.108 Sum_probs=53.1
Q ss_pred eEeEEEccCCCCcccCCccccCCCcCCcccCcCcc-ccccCCCCCCCC----CCCcEEeCCCCC-CCCCCcccccCCCCC
Q 006035 460 VIDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNS-IRGAIPSSLGTI----ASLEVLDLSYNF-FNGSIPESLGQLTAL 533 (663)
Q Consensus 460 ~l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~-l~g~ip~~~~~L----~~L~~LdLs~N~-l~g~iP~~l~~l~~L 533 (663)
.++.|||+++.++..--..+.++++|+.|+|+++. ++..--..+..+ ++|+.|+|+++. ++..--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 58889999888765433456777888888888874 543322234443 367888888764 552222345667777
Q ss_pred CEEeccCCc
Q 006035 534 RRLNLNGNT 542 (663)
Q Consensus 534 ~~L~Ls~N~ 542 (663)
+.|+|++..
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 878777654
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.61 E-value=0.015 Score=62.31 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=76.4
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCcccc-----ccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCE
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIR-----GAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 535 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~-----g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~ 535 (663)
++.+.| .++++..-...|.+|.+|+.++|.+|.+. ..-+..|.++++|+.++|. +.++-.-...+.++.+|+.
T Consensus 250 L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 250 ITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQ 327 (401)
T ss_dssp CSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCE
T ss_pred ccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccE
Confidence 566777 45566666778999999999999988875 2345678899999999999 4576444567888999999
Q ss_pred EeccCCcCCccCCchhhhccCCCCEEeccCCC
Q 006035 536 LNLNGNTLSGRVPAALGGRLLHRASFNFTDNA 567 (663)
Q Consensus 536 L~Ls~N~lsg~iP~~~~~~l~~L~~l~l~~N~ 567 (663)
++|..| ++ .|+...+... +|+.+.+.+|.
T Consensus 328 l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 328 LTIPAN-VT-QINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp EEECTT-CC-EECTTSSSSS-CCCEEEECCSS
T ss_pred EEECcc-cc-EEcHHhCCCC-CCCEEEEcCCC
Confidence 999655 55 4444433335 89999999885
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.03 E-value=0.036 Score=59.34 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=65.0
Q ss_pred EeEEEccCCCCc-----ccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCE
Q 006035 461 IDGLGLDNQGLR-----GFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRR 535 (663)
Q Consensus 461 l~~L~Ls~n~l~-----g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~ 535 (663)
|+.+.+.+|.+. ..-+..|.+|.+|+.++|. +.+.-.-...|.++.+|+.++|..| ++..-+..+.++ +|+.
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~ 349 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKE 349 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCE
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCE
Confidence 777888877765 3445689999999999999 4577555678999999999999765 664445678888 9999
Q ss_pred EeccCCcCC
Q 006035 536 LNLNGNTLS 544 (663)
Q Consensus 536 L~Ls~N~ls 544 (663)
|++++|.+.
T Consensus 350 l~l~~n~~~ 358 (401)
T 4fdw_A 350 VKVEGTTPP 358 (401)
T ss_dssp EEECCSSCC
T ss_pred EEEcCCCCc
Confidence 999999876
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.85 E-value=0.0066 Score=57.24 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=61.5
Q ss_pred CcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCC-CCCCCcccccCC----CCCCEEeccCCc-CCccCCchhhhccC
Q 006035 483 RHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNF-FNGSIPESLGQL----TALRRLNLNGNT-LSGRVPAALGGRLL 556 (663)
Q Consensus 483 ~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~-l~g~iP~~l~~l----~~L~~L~Ls~N~-lsg~iP~~~~~~l~ 556 (663)
..|+.|||+++.++..--..+..+++|+.|+|+++. ++..--..++.+ ++|+.|+|+++. ++-.==..+.. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CC
Confidence 479999999999875544567899999999999995 553222335554 379999999974 65211122333 68
Q ss_pred CCCEEeccCCCCCC
Q 006035 557 HRASFNFTDNAGLC 570 (663)
Q Consensus 557 ~L~~l~l~~N~~lc 570 (663)
+|+.|++++.+.+.
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 89999999876543
No 158
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.76 E-value=0.0087 Score=63.30 Aligned_cols=104 Identities=12% Similarity=0.172 Sum_probs=69.5
Q ss_pred eEeEEEccCCC-CcccCCccccCCCcCCcccCcCccccccCCCCCC--CCCCCcEEeCCC--CCCCCC--C---cccc--
Q 006035 460 VIDGLGLDNQG-LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLG--TIASLEVLDLSY--NFFNGS--I---PESL-- 527 (663)
Q Consensus 460 ~l~~L~Ls~n~-l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~--~L~~L~~LdLs~--N~l~g~--i---P~~l-- 527 (663)
.++.|+|++|. + .++. + .+++|+.|+|..+.++...-..+. .+++|+.|+|+. |...|. + ...+
T Consensus 173 ~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 173 LLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 48889998873 2 2333 3 378999999998887644333333 689999999863 332222 1 1122
Q ss_pred cCCCCCCEEeccCCcCCccCCchhhh--ccCCCCEEeccCCC
Q 006035 528 GQLTALRRLNLNGNTLSGRVPAALGG--RLLHRASFNFTDNA 567 (663)
Q Consensus 528 ~~l~~L~~L~Ls~N~lsg~iP~~~~~--~l~~L~~l~l~~N~ 567 (663)
..+++|+.|+|.+|.+....+..+.. .++.|+.|+++.|.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 25789999999999987544444432 35689999998875
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.81 E-value=0.036 Score=53.14 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=48.8
Q ss_pred EeEEEccCC-CCcc----cCCccccCCCcCCcccCcCccccccCCCC----CCCCCCCcEEeCCCCCCCCC----Ccccc
Q 006035 461 IDGLGLDNQ-GLRG----FLPNGISKLRHLQSINLSGNSIRGAIPSS----LGTIASLEVLDLSYNFFNGS----IPESL 527 (663)
Q Consensus 461 l~~L~Ls~n-~l~g----~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~----~~~L~~L~~LdLs~N~l~g~----iP~~l 527 (663)
++.|+|++| .|.. .+-..+..=+.|+.|+|++|.+...--.. +..-+.|+.|+|+.|+++.. +-+.+
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL 122 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence 666777764 5532 12334444567888888888876332222 22346788888888887632 22334
Q ss_pred cCCCCCCEEeccCC
Q 006035 528 GQLTALRRLNLNGN 541 (663)
Q Consensus 528 ~~l~~L~~L~Ls~N 541 (663)
..-..|+.|+|++|
T Consensus 123 ~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 123 LVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTCCCSEEECCCC
T ss_pred hhCCceeEEECCCC
Confidence 55567888888754
No 160
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=89.92 E-value=0.057 Score=38.20 Aligned_cols=17 Identities=12% Similarity=0.354 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 006035 598 IFLLIICSMVWWKRRQN 614 (663)
Q Consensus 598 ~~~~~~~~~~~~~rr~~ 614 (663)
++++++++++++|||++
T Consensus 24 ~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 24 LLVVALGIGLFMRRRHI 40 (44)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhhhhHh
Confidence 33444444555555543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.42 E-value=0.11 Score=49.64 Aligned_cols=88 Identities=16% Similarity=0.189 Sum_probs=59.0
Q ss_pred cCCCcCCcccCcCc-ccccc----CCCCCCCCCCCcEEeCCCCCCCC----CCcccccCCCCCCEEeccCCcCCccCCch
Q 006035 480 SKLRHLQSINLSGN-SIRGA----IPSSLGTIASLEVLDLSYNFFNG----SIPESLGQLTALRRLNLNGNTLSGRVPAA 550 (663)
Q Consensus 480 ~~L~~L~~L~Ls~N-~l~g~----ip~~~~~L~~L~~LdLs~N~l~g----~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~ 550 (663)
.+-+.|+.|+|++| .+... +-..+..-..|+.|+|++|++.. .+-+.+..-+.|+.|+|+.|++...--..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34468999999986 66421 22344556789999999999872 23334445688999999999997321112
Q ss_pred hhhc---cCCCCEEeccCCC
Q 006035 551 LGGR---LLHRASFNFTDNA 567 (663)
Q Consensus 551 ~~~~---l~~L~~l~l~~N~ 567 (663)
+... -..|+.|++++|.
T Consensus 118 la~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHhhCCceeEEECCCCc
Confidence 2222 2458899998754
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.46 E-value=1.4 Score=46.38 Aligned_cols=86 Identities=14% Similarity=0.253 Sum_probs=47.3
Q ss_pred ccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccC
Q 006035 477 NGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLL 556 (663)
Q Consensus 477 ~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~ 556 (663)
..|.++..|+.+.+. +.++..-...|.++.+|+.++|..+ ++-.-...+.++.+|+.+.|..+ ++ .|+...+....
T Consensus 282 ~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~ 357 (394)
T 4gt6_A 282 GAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCT 357 (394)
T ss_dssp TTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCT
T ss_pred cccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCC
Confidence 355566666666664 3344233445666677777776644 33222345666667777766543 43 44444333355
Q ss_pred CCCEEeccCC
Q 006035 557 HRASFNFTDN 566 (663)
Q Consensus 557 ~L~~l~l~~N 566 (663)
+|+.+.+.+|
T Consensus 358 ~L~~i~~~~~ 367 (394)
T 4gt6_A 358 ALNNIEYSGS 367 (394)
T ss_dssp TCCEEEESSC
T ss_pred CCCEEEECCc
Confidence 6666666655
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.41 E-value=0.66 Score=48.53 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=39.7
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.+.+..+ ++..-...|.++..|+.+.+..+ +...-...|..+.+|+.+++.++.++-.-...+.++.+|+.+.|..
T Consensus 242 L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 242 LDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred ceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 344444432 33333345555566666665433 3322234455666666666666655533334555666666666643
No 164
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=86.33 E-value=0.2 Score=35.30 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 006035 598 IFLLIICSMVWWKRRQNI 615 (663)
Q Consensus 598 ~~~~~~~~~~~~~rr~~~ 615 (663)
++++++++++++|||+++
T Consensus 23 v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 23 LVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHhhhhhhh
Confidence 334444445555555433
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=85.07 E-value=1.1 Score=47.28 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=24.1
Q ss_pred cccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEec
Q 006035 478 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNL 538 (663)
Q Consensus 478 ~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~L 538 (663)
.|.++.+|+.++|..+ ++..-...|.++.+|+.++|..| ++-.-...+.++.+|+.++|
T Consensus 315 aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 315 AFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred hhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 4444444444444322 33122334444444444444433 33112233444444444444
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=84.42 E-value=1.1 Score=47.28 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=57.9
Q ss_pred cccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCchhhhccCC
Q 006035 478 GISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAALGGRLLH 557 (663)
Q Consensus 478 ~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~~~~~l~~ 557 (663)
.|..+.+|+.+.+..+ +...-...|.++.+|+.++|..+ ++-.-...+.++.+|+.++|..| ++ .|+...+....+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCC
Confidence 5667788888888655 44333566888889999988754 55333456788888999888766 54 455443333567
Q ss_pred CCEEeccCC
Q 006035 558 RASFNFTDN 566 (663)
Q Consensus 558 L~~l~l~~N 566 (663)
|+.+++..+
T Consensus 368 L~~i~lp~~ 376 (394)
T 4fs7_A 368 LKKVELPKR 376 (394)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEECCC
Confidence 888877654
No 167
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=84.07 E-value=0.14 Score=36.02 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhH
Q 006035 598 IFLLIICSMVWWKRRQNI 615 (663)
Q Consensus 598 ~~~~~~~~~~~~~rr~~~ 615 (663)
++++++++++++|||+.+
T Consensus 24 ~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 24 VVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHhheehhhhh
Confidence 333444444555555443
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=82.46 E-value=2.1 Score=44.96 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=60.8
Q ss_pred EeEEEccCCCCcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccC
Q 006035 461 IDGLGLDNQGLRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNG 540 (663)
Q Consensus 461 l~~L~Ls~n~l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~ 540 (663)
++.+.+. +++...-...|.++.+|+.++|..+ ++..-...|.++.+|+.+.|..+ ++-.-...+.++.+|+.+++.+
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESS
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECC
Confidence 5666764 4555555568899999999999865 55344567999999999999765 6633356789999999999988
Q ss_pred CcC
Q 006035 541 NTL 543 (663)
Q Consensus 541 N~l 543 (663)
|..
T Consensus 367 ~~~ 369 (394)
T 4gt6_A 367 SRS 369 (394)
T ss_dssp CHH
T ss_pred cee
Confidence 754
No 169
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=78.45 E-value=36 Score=30.23 Aligned_cols=90 Identities=19% Similarity=0.224 Sum_probs=56.0
Q ss_pred CCCceEEEeecCCceEEEEEEEeCcCCCCCCCCCcEEEEECCeEEEEeecCCCCCCC---ceEEEEEEEeeCCeEEEEEE
Q 006035 121 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDD---RAFAEALVFLRDGTVSICFH 197 (663)
Q Consensus 121 g~~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~---~~~~E~i~~~~~~~l~vcf~ 197 (663)
|..-.|++.+.+.|.|.|++.+.-+. ......+|++||....++. |....+ .-...+.+..+.+.=.|.|.
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~----~~~r~~~l~VNG~~~~~v~--~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~ 111 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGG----TSARRATVVVNDSQIKTLD--FPTNSNWTQWQTVNVDIPLKAGTNSIKLV 111 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEC--CCCCSCTTSCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCC----CCCeEEEEEECCeEeeEEE--ecCCCCCCeeEEEEEEEEECCCceEEEEE
Confidence 44567888877889999999887432 2356799999996544443 222111 22223333446665566666
Q ss_pred eC-CCCCceEEEEEEEEcCC
Q 006035 198 ST-GHGDPAILSLEILQVDD 216 (663)
Q Consensus 198 ~~-~~~~pfIsaIEl~~l~~ 216 (663)
.. +.+.|-|..|+|.+.+.
T Consensus 112 ~~~~~g~~niD~i~v~~~~~ 131 (145)
T 2w3j_A 112 AETADGLANIDSIRVTGNGI 131 (145)
T ss_dssp ECSTTCCCEEEEEEECSTTE
T ss_pred EecCcCCEEEEEEEEEcCCC
Confidence 53 34668899999976553
No 170
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=77.68 E-value=7.2 Score=33.83 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=45.0
Q ss_pred ceEEEEecCCCCcEEEEEEEeeccCCCCCcceEEEEEEECCeecccCCccccccCC--ceEEEEEEEEEeecCeeEEEEE
Q 006035 308 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGD--RYTALVLNTTVAVNGRTLTVTL 385 (663)
Q Consensus 308 nlt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~--~~~~~~~~~~v~~~~~~l~i~~ 385 (663)
.++|...++..|.|.+.++++--. ...|.++|+|||..+...+.+.. ++. ..... ...+.+..|.-+|+|
T Consensus 40 ~v~~~V~v~~aG~Y~l~~rya~~~-----~~~~~~~l~VnG~~~~~~v~~p~-tg~W~~w~~~--~~~v~L~aG~ntI~l 111 (127)
T 2vzp_A 40 SVEWTVTVPSAGTYDVVVRYANGT-----TTSRPLDFSVNGSISASGVAFGS-TGTWPAWTTK--TVRVTLAAGVNKIKA 111 (127)
T ss_dssp EEEEEEEESSSEEEEEEEEEECCS-----SSCCCEEEEETTEEEEEEECCCC-CSSTTCCEEE--EEEEEECSEEEEEEE
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCC-----CCCeEEEEEECCEEeeeEEEecC-CCCCCceEEE--EEEEEECCCceEEEE
Confidence 489998888889999999998521 24688999999986433233322 222 12222 224556666655555
Q ss_pred cc
Q 006035 386 HP 387 (663)
Q Consensus 386 ~p 387 (663)
..
T Consensus 112 ~~ 113 (127)
T 2vzp_A 112 VA 113 (127)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 171
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=76.25 E-value=4.9 Score=41.66 Aligned_cols=93 Identities=9% Similarity=0.085 Sum_probs=66.7
Q ss_pred CcccCCccccCCCcCCcccCcCccccccCCCCCCCCCCCcEEeCCCCCCCCCCcccccCCCCCCEEeccCCcCCccCCch
Q 006035 471 LRGFLPNGISKLRHLQSINLSGNSIRGAIPSSLGTIASLEVLDLSYNFFNGSIPESLGQLTALRRLNLNGNTLSGRVPAA 550 (663)
Q Consensus 471 l~g~~p~~~~~L~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~l~g~iP~~l~~l~~L~~L~Ls~N~lsg~iP~~ 550 (663)
+...-...|.++..|+.+.+..+ ++..-...|.++.+|+.+++..+ +...-...+.++.+|+.+.+.++.++ .|++.
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~ 304 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPR 304 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTT
T ss_pred eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccc-eehhh
Confidence 33334456778889999998766 55344567888999999999765 44233356788999999999988887 56655
Q ss_pred hhhccCCCCEEeccCC
Q 006035 551 LGGRLLHRASFNFTDN 566 (663)
Q Consensus 551 ~~~~l~~L~~l~l~~N 566 (663)
.+....+|+.+.+..+
T Consensus 305 aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 305 VFMDCVKLSSVTLPTA 320 (379)
T ss_dssp TTTTCTTCCEEECCTT
T ss_pred hhcCCCCCCEEEcCcc
Confidence 4444677888887654
No 172
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=76.20 E-value=7.9 Score=34.47 Aligned_cols=85 Identities=14% Similarity=0.315 Sum_probs=49.0
Q ss_pred ceEEEEecCCCCcEEEEEEEeeccCCCCCcceEEEEEEECCeecccCCccccccCC--ceEEEEEEEEEeecCeeEEEEE
Q 006035 308 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGD--RYTALVLNTTVAVNGRTLTVTL 385 (663)
Q Consensus 308 nlt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~--~~~~~~~~~~v~~~~~~l~i~~ 385 (663)
.++|...++..|.|.+.+.++.- ..+.|.++|+|||..+...+.+.. ++. ..... ...+.+..|.-+|+|
T Consensus 41 ~v~~~V~v~~aG~Y~l~~ryan~-----~~~~~~~~l~VNG~~~~~~v~~p~-Tg~w~~w~~~--~~~v~L~aG~ntI~l 112 (144)
T 2w47_A 41 YIEWNVNAPSSGSYALIFRYANG-----TTANRPMRITVNGNIVKPSMDFVS-TGAWTTWNEA--GIVANLNQGNNVIRA 112 (144)
T ss_dssp EEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEECCCC-CSSTTCCEEE--EEEEEECSEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEEEEECC-----CCCCeEEEEEECCeEeeeEEEecC-CCCCCeeEEE--EEEEEECCCccEEEE
Confidence 48899888888999999999852 124688999999986433333322 222 12222 223555666545555
Q ss_pred ccCCCC-HHHHHHHhh
Q 006035 386 HPKGGS-HAIINAIEV 400 (663)
Q Consensus 386 ~p~~~s-~piLNaiEi 400 (663)
...... .+-|.-|++
T Consensus 113 ~~~~~~g~~niD~i~v 128 (144)
T 2w47_A 113 TAIASDGGPNVDYLKV 128 (144)
T ss_dssp EECSTTCCCEEEEEEE
T ss_pred EEeCCCCCEEEeEEEE
Confidence 532111 244444444
No 173
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=75.87 E-value=0.41 Score=32.72 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=14.6
Q ss_pred CCceEEEEchhHHHHHHHHHHHHHHHHHH
Q 006035 583 STSAKIGIGFGVLGLIFLLIICSMVWWKR 611 (663)
Q Consensus 583 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~r 611 (663)
+...+.++++++++.+++++.+.++++||
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCceeeeehHHHHHHHHHHHHHHHHeec
Confidence 34445555566555555444444444444
No 174
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=70.64 E-value=55 Score=28.76 Aligned_cols=90 Identities=18% Similarity=0.240 Sum_probs=56.8
Q ss_pred CCCceEEEeecCCceEEEEEEEeCcCCCCCCCCCcEEEEECCeEE-EEeecCCCCCC---CceEEEEEEEeeCCeEEEEE
Q 006035 121 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQI-YSLKSGWSDHD---DRAFAEALVFLRDGTVSICF 196 (663)
Q Consensus 121 g~~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~Fdv~~~~~~~-~tv~~~~~~~~---~~~~~E~i~~~~~~~l~vcf 196 (663)
|..-.|++.+.+.|.|.|++.+..+. .....++|++||... .++. |.... .......-+..+.+.=.|.|
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~----~~~~~~~l~VNG~~~~~~v~--~p~Tg~w~~w~~~~~~v~L~aG~ntI~l 112 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGT----TANRPMRITVNGNIVKPSMD--FVSTGAWTTWNEAGIVANLNQGNNVIRA 112 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEEC--CCCCSSTTCCEEEEEEEEECSEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCC----CCCeEEEEEECCeEeeeEEE--ecCCCCCCeeEEEEEEEEECCCccEEEE
Confidence 45568888888889999999987542 234679999999642 2332 22211 11222223445666656666
Q ss_pred EeC-CCCCceEEEEEEEEcCC
Q 006035 197 HST-GHGDPAILSLEILQVDD 216 (663)
Q Consensus 197 ~~~-~~~~pfIsaIEl~~l~~ 216 (663)
... ..+.|-|..|+|.+.+.
T Consensus 113 ~~~~~~g~~niD~i~v~~~~~ 133 (144)
T 2w47_A 113 TAIASDGGPNVDYLKVFSANA 133 (144)
T ss_dssp EECSTTCCCEEEEEEEEECTT
T ss_pred EEeCCCCCEEEeEEEEEeCCC
Confidence 543 34568999999987653
No 175
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=70.14 E-value=62 Score=29.11 Aligned_cols=90 Identities=19% Similarity=0.248 Sum_probs=54.2
Q ss_pred ceEE-EeecCCceEEEEEEEeCcCCC---CC--C-CCCcEEEEECCeEEEEeecCCCCC---CCceEEEEEEEeeCCeEE
Q 006035 124 NCYI-INRVPKGHYNVRIFFGLVTLT---SF--D-HEPLFDISVEGTQIYSLKSGWSDH---DDRAFAEALVFLRDGTVS 193 (663)
Q Consensus 124 ~cY~-~~~~~~g~ylvRl~F~~~~y~---~~--~-~~~~Fdv~~~~~~~~tv~~~~~~~---~~~~~~E~i~~~~~~~l~ 193 (663)
-.++ +.+.+.|.|.|++.|..+... +. + .....+|++||..-.++. |... .......+.+..+.+.=.
T Consensus 49 vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~--fp~Tg~W~~~~~~tv~V~L~aG~Nt 126 (156)
T 2wz8_A 49 LQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHY--FFNTRGWNTYRTDIIDVYLNAGNNT 126 (156)
T ss_dssp EEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEE--ECCCSSTTCCEEEEEEEEECSEEEE
T ss_pred EEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEE--eCCCCCCCcceEEEEEEEECCCceE
Confidence 3555 666678999999999765321 11 1 356799999986522332 2221 122233334455777778
Q ss_pred EEEEeC--CCCCceEEEEEEEEcC
Q 006035 194 ICFHST--GHGDPAILSLEILQVD 215 (663)
Q Consensus 194 vcf~~~--~~~~pfIsaIEl~~l~ 215 (663)
|.|... ....|-|-.|+|.+..
T Consensus 127 I~~~~~~~~~~~pdiD~i~v~~~~ 150 (156)
T 2wz8_A 127 IRFYNGTSGSYAPNIDKIAIAALE 150 (156)
T ss_dssp EEEECCSTTCBCCEEEEEEEEC--
T ss_pred EEEEecCCCCCCcEEEEEEEeccc
Confidence 888876 3445899999987654
No 176
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=69.55 E-value=14 Score=33.01 Aligned_cols=71 Identities=13% Similarity=0.360 Sum_probs=43.7
Q ss_pred ceEEEEecCCCCcEEEEEEEeeccCCCCCcceEEEEEEECCeecccCCccccccCC--ceEEEEEEEEEeecCeeEEEEE
Q 006035 308 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIAFQGVDVVKMSGD--RYTALVLNTTVAVNGRTLTVTL 385 (663)
Q Consensus 308 nlt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~~~--~~~~~~~~~~v~~~~~~l~i~~ 385 (663)
.++|+..++..|.|.+.+.++.- ..+.|.++|+|||... ..+.+.. ++. .+... ...+....|.=+|+|
T Consensus 40 ~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~-~~v~~p~-Tg~W~~w~t~--~~~v~L~aG~ntI~l 110 (145)
T 2w3j_A 40 SIVWSLSAASAKTYTAQIRFGNG-----GTSARRATVVVNDSQI-KTLDFPT-NSNWTQWQTV--NVDIPLKAGTNSIKL 110 (145)
T ss_dssp EEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTEEE-EEECCCC-CSCTTSCEEE--EEEEEECSEEEEEEE
T ss_pred EEEEEEECCCCeEEEEEEEEECC-----CCCCeEEEEEECCeEe-eEEEecC-CCCCCeeEEE--EEEEEECCCceEEEE
Confidence 48899888888999999999831 1246889999999764 2233222 222 12222 224555666545555
Q ss_pred cc
Q 006035 386 HP 387 (663)
Q Consensus 386 ~p 387 (663)
..
T Consensus 111 ~~ 112 (145)
T 2w3j_A 111 VA 112 (145)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 177
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=65.92 E-value=43 Score=34.77 Aligned_cols=79 Identities=20% Similarity=0.390 Sum_probs=54.1
Q ss_pred ceEEEeecCCceEEEEEEEeCcCCCCCCCCCcEEEEECCeEEEEeecCCCCCCCceEEEEEEEeeCCeEEEEEEeCCCC-
Q 006035 124 NCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHSTGHG- 202 (663)
Q Consensus 124 ~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~~~~E~i~~~~~~~l~vcf~~~~~~- 202 (663)
+.+++. .++|.|.|.+.+-.+ +.=.|...+. ..+. +.......+++.+.+.++.+.+.+.....+
T Consensus 78 ~~f~v~-~~~g~Y~v~v~~g~~--------~~~~v~~e~~--~~~~---~~~g~~~~~~~~v~~~~g~~~l~~~~~~~g~ 143 (375)
T 2o14_A 78 NTFNVD-LPNGLYEVKVTLGNT--------ARASVAAEGV--FQVI---NMTGDGAEDTFQIPVTDGQLNLLVTEGKAGT 143 (375)
T ss_dssp CCEEEE-CCSEEEEEEEEESSC--------SEEEEEETTE--EEEE---EEESTTCEEEEEEEECSSEEEEEEEESSTTS
T ss_pred eEEEEE-cCCCceEEEEEecCC--------cceEEEEcce--EEEE---ecCCCcEEEEEEEEeeCCeEEEeeeeccCCC
Confidence 344443 357999999988654 2344556653 3333 344556777888889999999998754334
Q ss_pred CceEEEEEEEEcCC
Q 006035 203 DPAILSLEILQVDD 216 (663)
Q Consensus 203 ~pfIsaIEl~~l~~ 216 (663)
.+++++||+.+.+.
T Consensus 144 ~~~l~~i~v~~~~~ 157 (375)
T 2o14_A 144 AFTLSALKIKKLSD 157 (375)
T ss_dssp CCEEEEEEEEEEES
T ss_pred CcccceEEEeccCC
Confidence 57899999998764
No 178
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=63.74 E-value=69 Score=27.32 Aligned_cols=87 Identities=20% Similarity=0.240 Sum_probs=52.3
Q ss_pred CCCCceEEEeecCCceEEEEEEEeCcCCCCCCCCCcEEEEECCeEEEEeecCCCCCC---CceEEEEEEEeeCCeEEEEE
Q 006035 120 EGPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHD---DRAFAEALVFLRDGTVSICF 196 (663)
Q Consensus 120 ~g~~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~---~~~~~E~i~~~~~~~l~vcf 196 (663)
.|..-.|++.+.+.|.|.|++.+..+. .....++|++||....+-. .|.... ........+..+.+.=.|.|
T Consensus 37 ~g~~v~~~V~v~~aG~Y~l~~rya~~~----~~~~~~~l~VnG~~~~~~v-~~p~tg~W~~w~~~~~~v~L~aG~ntI~l 111 (127)
T 2vzp_A 37 AGSSVEWTVTVPSAGTYDVVVRYANGT----TTSRPLDFSVNGSISASGV-AFGSTGTWPAWTTKTVRVTLAAGVNKIKA 111 (127)
T ss_dssp TTCEEEEEEEESSSEEEEEEEEEECCS----SSCCCEEEEETTEEEEEEE-CCCCCSSTTCCEEEEEEEEECSEEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEEEEEcCC----CCCeEEEEEECCEEeeeEE-EecCCCCCCceEEEEEEEEECCCceEEEE
Confidence 355678898888889999999997653 2346799999996532211 232211 11122223344666556666
Q ss_pred EeC-CCCCceEEEEEE
Q 006035 197 HST-GHGDPAILSLEI 211 (663)
Q Consensus 197 ~~~-~~~~pfIsaIEl 211 (663)
... ..+.|-|..|+|
T Consensus 112 ~~~~~~~~~niD~i~v 127 (127)
T 2vzp_A 112 VATTANGGPNVDKITL 127 (127)
T ss_dssp EECSTTCCCEEEEEEC
T ss_pred EEeCCCCCeEEEEEEC
Confidence 543 345677877764
No 179
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=63.44 E-value=18 Score=31.98 Aligned_cols=72 Identities=17% Similarity=0.260 Sum_probs=43.5
Q ss_pred ceEEEEecCCCCcEEEEEEEeeccCCCCCcceEEEEEEECCeec-ccCCccccccCC--ceEEEEEEEEEeecCeeEEEE
Q 006035 308 DLQYTMDVDPNRNYSIWLHFAEIDNTITGVGQRVFDILINGDIA-FQGVDVVKMSGD--RYTALVLNTTVAVNGRTLTVT 384 (663)
Q Consensus 308 nlt~~~~v~~~~~y~vrLhFaEi~~~~~~~~~R~F~V~ing~~~-~~~~di~~~~~~--~~~~~~~~~~v~~~~~~l~i~ 384 (663)
.++|...++..|.|.+.+.++.- ....|..+|+|||... ...+.+.. ++. ..... ...+....|.-+|+
T Consensus 40 ~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~g~~~v~~p~-Tg~W~~w~t~--~~~v~L~aG~ntI~ 111 (139)
T 2w87_A 40 AVVWAIDATSSGRRTLTIRYANG-----GTANRNGSLVINGGSNGNYTVSLPT-TGAWTTWQTA--TIDVDLVQGNNIVQ 111 (139)
T ss_dssp EEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTTTTCEEEECCCC-CSSTTCCEEE--EEEEEECSEEEEEE
T ss_pred EEEEEEECCCCcEEEEEEEEECC-----CCCCceEEEEECCEEcceeEEEecC-CCCCCccEEE--EEEEEECCCceEEE
Confidence 48888888778999999999752 1235889999999754 12333322 232 12222 23455556654555
Q ss_pred Ecc
Q 006035 385 LHP 387 (663)
Q Consensus 385 ~~p 387 (663)
|..
T Consensus 112 l~~ 114 (139)
T 2w87_A 112 LSA 114 (139)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 180
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=56.55 E-value=1e+02 Score=26.93 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=53.4
Q ss_pred CCCceEEEeecCCceEEEEEEEeCcCCCCCCCCCcEEEEECCeEE--EEeecCCCCCC---CceEEEEEEEeeCCeEEEE
Q 006035 121 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQI--YSLKSGWSDHD---DRAFAEALVFLRDGTVSIC 195 (663)
Q Consensus 121 g~~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~Fdv~~~~~~~--~tv~~~~~~~~---~~~~~E~i~~~~~~~l~vc 195 (663)
|..-.|++.+.+.|.|.|++.+..+. ......+|++||... .++. |.... ..-..+.-+..+.+.=.|.
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang~----~~~r~~~l~VNG~~~g~~~v~--~p~Tg~W~~w~t~~~~v~L~aG~ntI~ 111 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANGG----TANRNGSLVINGGSNGNYTVS--LPTTGAWTTWQTATIDVDLVQGNNIVQ 111 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCS----SSCCCEEEEETTTTTCEEEEC--CCCCSSTTCCEEEEEEEEECSEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCC----CCCceEEEEECCEEcceeEEE--ecCCCCCCccEEEEEEEEECCCceEEE
Confidence 44557888777789999999987542 224579999998653 2332 22211 1122233334456655666
Q ss_pred EEeCC-CCCceEEEEEEEE
Q 006035 196 FHSTG-HGDPAILSLEILQ 213 (663)
Q Consensus 196 f~~~~-~~~pfIsaIEl~~ 213 (663)
|.... .+.|-|.-|+|.+
T Consensus 112 l~~~~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 112 LSATTAEGLPNIDSLSVVG 130 (139)
T ss_dssp EEESSTTCCCEEEEEEEES
T ss_pred EEEcCCCCCEEEEEEEEec
Confidence 65543 4678899999875
No 181
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=52.19 E-value=61 Score=29.17 Aligned_cols=79 Identities=20% Similarity=0.172 Sum_probs=45.2
Q ss_pred ceEEE-EecCCCCcEEEEEEEeeccCC-----CCCcceEEEEEEECCeecccCCccccccCCceEEEEEEEEEeecCeeE
Q 006035 308 DLQYT-MDVDPNRNYSIWLHFAEIDNT-----ITGVGQRVFDILINGDIAFQGVDVVKMSGDRYTALVLNTTVAVNGRTL 381 (663)
Q Consensus 308 nlt~~-~~v~~~~~y~vrLhFaEi~~~-----~~~~~~R~F~V~ing~~~~~~~di~~~~~~~~~~~~~~~~v~~~~~~l 381 (663)
.++|. ..++..|.|.++++|+.-... ......|...|+|||... ..++.. .++.--..-.....+.+..|.=
T Consensus 48 ~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~-~~v~fp-~Tg~W~~~~~~tv~V~L~aG~N 125 (156)
T 2wz8_A 48 YLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPE-KGHYFF-NTRGWNTYRTDIIDVYLNAGNN 125 (156)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCC-EEEEEC-CCSSTTCCEEEEEEEEECSEEE
T ss_pred EEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCcee-eEEEeC-CCCCCCcceEEEEEEEECCCce
Confidence 48888 888888999999999864210 011247999999999752 122221 1222111111122445566655
Q ss_pred EEEEccC
Q 006035 382 TVTLHPK 388 (663)
Q Consensus 382 ~i~~~p~ 388 (663)
+|+|...
T Consensus 126 tI~~~~~ 132 (156)
T 2wz8_A 126 TIRFYNG 132 (156)
T ss_dssp EEEEECC
T ss_pred EEEEEec
Confidence 6666654
No 182
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=32.60 E-value=20 Score=28.51 Aligned_cols=17 Identities=24% Similarity=0.579 Sum_probs=6.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 006035 592 FGVLGLIFLLIICSMVW 608 (663)
Q Consensus 592 ~~~~~~~~~~~~~~~~~ 608 (663)
+++++++++++++++++
T Consensus 15 ~gvi~gilliGllllli 31 (79)
T 2knc_B 15 LSVMGAILLIGLAALLI 31 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444333333333333
No 183
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=29.91 E-value=24 Score=24.73 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=21.2
Q ss_pred EchhHHHHHHHHHHHHHHHHHHHhhHHH
Q 006035 590 IGFGVLGLIFLLIICSMVWWKRRQNILR 617 (663)
Q Consensus 590 i~~~~~~~~~~~~~~~~~~~~rr~~~~~ 617 (663)
|+.+++..+++++++.+.++...|++++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 4566666788888888888888887754
No 184
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=29.21 E-value=10 Score=25.15 Aligned_cols=7 Identities=43% Similarity=0.463 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 006035 606 MVWWKRR 612 (663)
Q Consensus 606 ~~~~~rr 612 (663)
.+++|||
T Consensus 28 ~~~iRRr 34 (35)
T 1iij_A 28 GILIKRR 34 (35)
T ss_dssp THHHHHC
T ss_pred heEEeec
Confidence 3455554
No 185
>2bgo_A Endo-B1,4-mannanase 5C; carbohydrate binding protein, carbohydrate binding module; NMR {Cellvibrio japonicus} PDB: 2bgp_A
Probab=27.38 E-value=3.2e+02 Score=24.05 Aligned_cols=89 Identities=13% Similarity=0.185 Sum_probs=55.9
Q ss_pred CCCceEEEeecCCceEEEEEEEeCcCCCCCCCCCcEEEEECCeEEEEeecCCCCCCCceEEEEEEEeeCCeEEEEEEeC-
Q 006035 121 GPENCYIINRVPKGHYNVRIFFGLVTLTSFDHEPLFDISVEGTQIYSLKSGWSDHDDRAFAEALVFLRDGTVSICFHST- 199 (663)
Q Consensus 121 g~~~cY~~~~~~~g~ylvRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~~~~~~~~E~i~~~~~~~l~vcf~~~- 199 (663)
+.+-.+++.+.+.|.|-+.+.+.. .|. ...=.|.+||. -..+. |......+-+-.++..+.++=.|.|...
T Consensus 35 gdsVtf~VdVP~tG~YdLsI~Ya~-~~G----~k~n~L~VNG~-~~~V~--fP~tt~~~~~~~~V~L~aG~NtI~i~~~~ 106 (140)
T 2bgo_A 35 GSAVIWNVDVPVTGEYRINLTWSS-PYS----SKVNTLVMDGT-ALSYA--FAEATVPVTYVQTKTLSAGNHSFGVRVGS 106 (140)
T ss_dssp TCEEEEEECCCSSEEEEEEEEECC-CSS----EEEEEEEETTE-EEEEE--EESCCSCEEEEEEEEECSSCEEEEEECCS
T ss_pred CCEEEEEEecCCCcEEEEEEEecc-CCC----CceEEEEECCc-eeEEE--ECCcCCcEEEEEEEEecCCccEEEEEecC
Confidence 445567777778899998887632 222 23448899986 34443 2333332222223556788888888863
Q ss_pred -CCCCceEEEEEEEEcCCc
Q 006035 200 -GHGDPAILSLEILQVDDK 217 (663)
Q Consensus 200 -~~~~pfIsaIEl~~l~~~ 217 (663)
.-|.-+|-+|+|.+.+..
T Consensus 107 g~WG~~~iD~I~l~~a~~~ 125 (140)
T 2bgo_A 107 SDWGYMNVHSLKLELLGGL 125 (140)
T ss_dssp SSCCCCEEEEEEEEECC--
T ss_pred CCceeEEEEEEEEEcCCCc
Confidence 357889999999988764
No 186
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.38 E-value=66 Score=25.52 Aligned_cols=30 Identities=13% Similarity=-0.076 Sum_probs=14.6
Q ss_pred CCCCCCCCceEEEEchhHHHHHHHHHHHHH
Q 006035 577 ACGPHLSTSAKIGIGFGVLGLIFLLIICSM 606 (663)
Q Consensus 577 ~c~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 606 (663)
.|........+++.++++++++.+++++++
T Consensus 3 ~Cp~~~n~~~Iv~gvi~gilliGllllliw 32 (79)
T 2knc_B 3 MGSKGPDILVVLLSVMGAILLIGLAALLIW 32 (79)
T ss_dssp SSCSSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 355444555555545555554444444443
Done!