Query 006036
Match_columns 663
No_of_seqs 332 out of 1920
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 17:25:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03133 beta-1,3-galactosyltr 100.0 8E-158 2E-162 1322.9 58.7 611 13-663 1-634 (636)
2 KOG2287 Galactosyltransferases 100.0 1.3E-59 2.8E-64 504.5 27.8 332 327-663 6-347 (349)
3 PLN03193 beta-1,3-galactosyltr 100.0 1.1E-49 2.3E-54 427.6 20.5 245 365-632 103-362 (408)
4 PF01762 Galactosyl_T: Galacto 100.0 4.5E-44 9.7E-49 353.7 16.4 184 429-614 1-190 (195)
5 PTZ00210 UDP-GlcNAc-dependent 100.0 1.1E-36 2.3E-41 323.3 20.5 229 412-657 77-359 (382)
6 KOG2288 Galactosyltransferases 100.0 3.3E-35 7.2E-40 296.0 18.3 241 412-662 8-270 (274)
7 smart00276 GLECT Galectin. Gal 100.0 1.8E-30 3.9E-35 241.8 16.6 127 182-387 1-127 (128)
8 cd00070 GLECT Galectin/galacto 100.0 2.8E-29 6E-34 233.2 16.0 126 182-386 2-127 (127)
9 PF00337 Gal-bind_lectin: Gala 100.0 2E-29 4.4E-34 235.0 14.6 133 181-387 1-133 (133)
10 KOG3587 Galectin, galactose-bi 99.9 7.1E-25 1.5E-29 208.4 15.2 135 181-389 5-140 (143)
11 PF02434 Fringe: Fringe-like; 99.7 4E-17 8.7E-22 168.8 9.7 180 416-612 7-196 (252)
12 KOG2246 Galactosyltransferases 99.6 1.7E-14 3.6E-19 156.4 12.2 164 412-613 88-263 (364)
13 PLN03153 hypothetical protein; 99.0 4.1E-09 8.8E-14 117.4 12.2 104 502-622 207-313 (537)
14 KOG3708 Uncharacterized conser 97.2 0.0012 2.7E-08 73.6 9.3 198 414-655 25-245 (681)
15 cd02520 Glucosylceramide_synth 94.2 2.2 4.9E-05 41.6 15.9 128 449-611 31-162 (196)
16 PF13641 Glyco_tranf_2_3: Glyc 93.9 0.83 1.8E-05 45.2 12.3 185 416-620 2-201 (228)
17 TIGR03472 HpnI hopanoid biosyn 92.9 1.7 3.8E-05 47.5 13.8 186 415-612 41-239 (373)
18 PF01755 Glyco_transf_25: Glyc 92.1 1.8 4E-05 42.6 11.6 35 419-459 4-38 (200)
19 cd04186 GT_2_like_c Subfamily 91.5 5.9 0.00013 36.3 13.7 84 501-620 70-156 (166)
20 cd04196 GT_2_like_d Subfamily 91.1 2 4.4E-05 41.5 10.6 153 448-611 27-189 (214)
21 cd04192 GT_2_like_e Subfamily 90.9 5.6 0.00012 38.8 13.6 152 449-609 29-191 (229)
22 cd06439 CESA_like_1 CESA_like_ 90.5 12 0.00027 37.4 16.0 180 414-611 28-214 (251)
23 cd06423 CESA_like CESA_like is 89.9 6.7 0.00014 35.5 12.3 90 498-587 71-171 (180)
24 cd06421 CESA_CelA_like CESA_Ce 88.6 2.4 5.1E-05 41.8 8.9 117 499-623 78-205 (234)
25 cd06433 GT_2_WfgS_like WfgS an 88.3 6 0.00013 37.5 11.2 110 497-611 67-179 (202)
26 PF00535 Glycos_transf_2: Glyc 87.5 3.5 7.7E-05 37.4 8.8 155 418-585 3-168 (169)
27 cd06435 CESA_NdvC_like NdvC_li 87.5 8.1 0.00018 38.4 12.1 176 448-652 28-220 (236)
28 PRK11204 N-glycosyltransferase 87.5 26 0.00057 38.6 17.1 186 414-623 53-254 (420)
29 cd02525 Succinoglycan_BP_ExoA 87.4 32 0.00068 34.0 17.9 159 448-620 31-199 (249)
30 cd06434 GT2_HAS Hyaluronan syn 87.3 14 0.00031 36.5 13.7 156 449-620 29-204 (235)
31 cd02510 pp-GalNAc-T pp-GalNAc- 86.8 32 0.00069 36.1 16.5 113 497-611 75-210 (299)
32 COG1215 Glycosyltransferases, 86.6 25 0.00055 38.5 16.4 194 415-624 54-260 (439)
33 PRK14583 hmsR N-glycosyltransf 86.3 20 0.00043 40.3 15.6 183 415-622 75-274 (444)
34 cd04184 GT2_RfbC_Mx_like Myxoc 85.0 37 0.00081 32.5 16.3 158 448-622 31-194 (202)
35 PF13506 Glyco_transf_21: Glyc 84.8 1.2 2.5E-05 44.0 4.4 104 504-612 30-140 (175)
36 cd04185 GT_2_like_b Subfamily 84.7 11 0.00023 36.6 11.0 87 497-612 72-160 (202)
37 cd06532 Glyco_transf_25 Glycos 84.2 6.2 0.00014 36.7 8.7 109 419-589 2-117 (128)
38 PF13632 Glyco_trans_2_3: Glyc 81.5 5.5 0.00012 38.5 7.5 108 508-624 1-119 (193)
39 cd04195 GT2_AmsE_like GT2_AmsE 81.1 11 0.00024 36.3 9.5 157 449-622 30-194 (201)
40 cd06420 GT2_Chondriotin_Pol_N 81.0 25 0.00055 33.1 11.8 96 497-612 71-166 (182)
41 COG1216 Predicted glycosyltran 80.5 83 0.0018 33.3 17.1 134 474-612 55-206 (305)
42 TIGR03111 glyc2_xrt_Gpos1 puta 80.0 45 0.00097 37.5 15.1 184 415-611 49-251 (439)
43 TIGR03469 HonB hopene-associat 79.2 69 0.0015 35.3 16.0 189 414-612 39-248 (384)
44 cd04187 DPM1_like_bac Bacteria 76.9 9.5 0.00021 36.3 7.5 134 448-587 29-164 (181)
45 PLN02726 dolichyl-phosphate be 76.4 53 0.0011 33.2 13.2 133 448-588 40-184 (243)
46 cd02526 GT2_RfbF_like RfbF is 75.9 74 0.0016 31.4 13.9 105 505-612 75-190 (237)
47 PF04646 DUF604: Protein of un 75.9 3.3 7.2E-05 43.6 4.2 42 571-612 12-55 (255)
48 cd04179 DPM_DPG-synthase_like 73.5 8.3 0.00018 36.4 6.1 119 462-586 41-167 (185)
49 cd06427 CESA_like_2 CESA_like_ 73.4 42 0.0009 33.8 11.5 116 496-620 75-203 (241)
50 PRK14716 bacteriophage N4 adso 65.3 98 0.0021 36.0 13.5 194 414-623 65-283 (504)
51 cd00761 Glyco_tranf_GTA_type G 64.3 97 0.0021 26.9 13.0 77 499-611 71-150 (156)
52 TIGR03030 CelA cellulose synth 61.8 83 0.0018 38.0 12.5 126 488-622 212-351 (713)
53 cd06437 CESA_CaSu_A2 Cellulose 61.7 1.7E+02 0.0038 28.9 15.9 104 497-611 79-198 (232)
54 cd04191 Glucan_BSP_ModH Glucan 58.6 71 0.0015 33.4 10.0 193 419-622 3-224 (254)
55 cd06438 EpsO_like EpsO protein 56.9 82 0.0018 30.1 9.5 76 504-584 80-169 (183)
56 cd06442 DPM1_like DPM1_like re 53.2 96 0.0021 30.2 9.5 87 499-586 72-167 (224)
57 PF10111 Glyco_tranf_2_2: Glyc 51.9 91 0.002 32.7 9.6 160 447-613 33-209 (281)
58 PRK10714 undecaprenyl phosphat 49.1 93 0.002 33.6 9.3 132 448-587 38-174 (325)
59 cd02522 GT_2_like_a GT_2_like_ 48.2 2.6E+02 0.0057 27.0 14.1 104 498-611 65-172 (221)
60 PRK11234 nfrB bacteriophage N4 45.7 5.4E+02 0.012 31.4 15.8 193 414-622 62-279 (727)
61 PRK11498 bcsA cellulose syntha 42.7 1.8E+02 0.0039 36.1 11.2 125 488-622 323-462 (852)
62 TIGR01556 rhamnosyltran L-rham 42.6 1.7E+02 0.0038 30.1 9.9 111 497-611 66-186 (281)
63 cd02514 GT13_GLCNAC-TI GT13_GL 35.8 2.2E+02 0.0049 31.3 9.7 80 496-585 88-174 (334)
64 cd04188 DPG_synthase DPG_synth 31.5 3.8E+02 0.0081 26.1 9.8 88 448-541 30-120 (211)
65 PRK05454 glucosyltransferase M 25.6 5.2E+02 0.011 31.4 11.2 198 413-623 122-350 (691)
66 PF13704 Glyco_tranf_2_4: Glyc 23.4 3.8E+02 0.0081 22.9 7.3 49 474-522 40-88 (97)
67 COG3306 Glycosyltransferase in 22.4 2.3E+02 0.005 30.0 6.7 37 419-460 5-41 (255)
68 PLN03181 glycosyltransferase; 22.4 4.6E+02 0.01 30.0 9.2 88 432-519 109-212 (453)
69 PF05679 CHGN: Chondroitin N-a 20.1 1.3E+02 0.0028 34.9 4.6 58 596-655 10-82 (499)
70 PF06439 DUF1080: Domain of Un 20.1 2.5E+02 0.0054 26.9 6.0 39 327-365 120-158 (185)
No 1
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=8.4e-158 Score=1322.85 Aligned_cols=611 Identities=50% Similarity=0.950 Sum_probs=573.7
Q ss_pred ccccchhHHHHHHHHHHHHHhhcccccccccccchhhhhccccccCccccCC--------CCCCCcccCCccchhhhhhc
Q 006036 13 MRNWSGGLLIMALAIILVMSYSFMGTQTQTQHRTQTQKQKHKQSANDFFRNH--------PSNDSDMKGSQGVKEVKKTQ 84 (663)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 84 (663)
||||+||+||++|||+|+|||. ++++|.+.++++ ..|+.|+ ++.++++++| +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~------~--- 60 (636)
T PLN03133 1 MKKWYGGVLVVSLFMLLVLRYV-LLKNPIGESYLQ----------SVFPSNTTNPLEWLDPTNPPAVQNP------E--- 60 (636)
T ss_pred CceeeeeehHHHHHHHHHHHHH-HhcCCCCCCCcc----------cccccccCCchhhcccCCCccccCC------C---
Confidence 9999999999999999999998 999999988773 4666665 4556666665 5
Q ss_pred cccCCCeeeecC-CCcccccCCCCCCCCCcccccchhhhhhhhccccchhhHHHHHHHHHHHHHHHhhhHHhhhccC---
Q 006036 85 KLFEKPHIINVQ-GLGDLYSLKNMLGEDSRPLLVWGHMRLLLSRSDALPETAQGVKEAAIAWKDLLSVIEEEKASKF--- 160 (663)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--- 160 (663)
|++++++.+ ++|+||+++|+|+|++++|++|++||+|++|||+||+|++||+||+.||++|++++++++++..
T Consensus 61 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~aw~~~~~~~~~~~~~~~~~~ 137 (636)
T PLN03133 61 ---NSSQVISTDTIVSSLFATRNISNEEQQSLLTWNHLKHLVDHAQVLPNGVEAIKEAGVAWESLMASVEEEKLGYTNES 137 (636)
T ss_pred ---ccceeeccccchhhccccccCchhhhhhhhHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 778888888 9999999999999999999999999999999999999999999999999999999996555322
Q ss_pred ----CCCCCCCcceecccccccCCc-eEEeeCCCCCCCcEEEEEEEeCCCCCceEEEcccCCCCCCCCCCeeEEEeeeCC
Q 006036 161 ----SRRKNCPPFVSNLSKSLSSGR-LIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLP 235 (663)
Q Consensus 161 ----~~~~~cp~~v~~~~~~~~~~~-~~~~lpcGL~~Gs~itv~G~p~~~~~~F~i~L~~~~~~~~~~~~i~LH~NpR~~ 235 (663)
.++++||+||+.+++++++++ |++.|||||.+|++|||+|+|+++++||+|||+|+..+|++++||||||||||+
T Consensus 138 ~~~~~~~~~cp~~~~~~~~~~~~~~~~~~~iP~GL~~Gs~ItI~G~p~~~~~~F~InL~g~~~~g~~~~~iaLHfNpRf~ 217 (636)
T PLN03133 138 SLRKSKEKQCPYFLNKMNATELGDSGYKLKIPCGLTQGSSITIIGIPDGLLGNFRIDLTGEPLPGEPDPPIILHYNVRLL 217 (636)
T ss_pred ccccCCCCCCchhhhhcccccccCCceEEecCCcCCCCCEEEEEEEeCCCCCeEEEEEeecCcCCCCCCCEEEEEcCccC
Confidence 256899999999999987655 999999999999999999999999999999999998888888999999999999
Q ss_pred CCCCCCCCeEEEcCccCCCCCccceecCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCcchh
Q 006036 236 GDNMTEEPFIIQNSWTNELGWGKEERCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDML 315 (663)
Q Consensus 236 gd~~~~~pvIv~Ns~~~~~~WG~eeR~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (663)
|||+|++|+||||||+.+|+||.||||++|+|.++++||||++||||+|+|++++++++++ ||
T Consensus 218 gd~~t~~~vIV~NT~~~~~~WG~EERc~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~-----------------~~ 280 (636)
T PLN03133 218 GDKITEDPVIVQNTWTAAHDWGEEERCPSPDPDKNKKVDDLDQCNKMVGRDDKRVLSTSLH-----------------SN 280 (636)
T ss_pred CCccccCCEEEeCCCcCCCcccHhhhcCCCCccccccccchhhhhhhhccccccccccccc-----------------cc
Confidence 9999999999999999338999999999999999999999999999999999999999877 88
Q ss_pred ccc----ccccCCCCcCCCCCCCCcEEEEEEEecCeEEEEeCCeEeEEeeccccCCCCceEEEEEECCeeeeecccCCCC
Q 006036 316 ANA----SRVGAHETSNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEGLP 391 (663)
Q Consensus 316 ~~~----~~~~~~~~~~fPF~~G~~F~l~i~~~~~gf~v~VnG~h~~sF~yR~~l~~~~v~~l~i~Gdv~l~sV~a~~lP 391 (663)
+|| ++++++.+++|||++|++|++||+||.|||||+|||+|+|+|+||++++||.|++|+|+|||+|+||.|.++|
T Consensus 281 ~~~~~~~~~~~~~~~~~fPF~~G~~F~lti~~g~egf~v~VnG~H~tsF~yR~~lep~~V~~l~V~GDv~l~SV~a~~~p 360 (636)
T PLN03133 281 GSRRSPMSQEATKARRYFPFKQGYLSVATLRVGTEGIQMTVDGKHITSFAYRETLEPWLVSEVRISGDLKLISVLASGLP 360 (636)
T ss_pred ccccccccccccccccCCCCCCCCcEEEEEEecCCEEEEEECCeEEEeeeCCCCCCccceeEEEEeCcEEEEEEEeeCCC
Confidence 887 7888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchhhhcCCCCC-CCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHH
Q 006036 392 VSEDFDFIVDVEHLKAPLIS-RKRLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKE 470 (663)
Q Consensus 392 ~~~~~~~~~~~~~l~~p~~~-~~~v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~E 470 (663)
++|+++++++++.|++|+++ +++++|||+|+|+++|++||+|||+|||+....++..++++|++|.+.++.++..|++|
T Consensus 361 ~~~~~~~~~d~e~lkAppL~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~E 440 (636)
T PLN03133 361 TSEDSEHVIDLEALKSPPLSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNE 440 (636)
T ss_pred CCCchhcccchHHhcCCCCCCCCceEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHH
Confidence 99999999999999999988 56899999999999999999999999999876667789999999999999999999999
Q ss_pred HhhcCCEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeeEEeeeCCCCCccC
Q 006036 471 AQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRD 549 (663)
Q Consensus 471 a~~ygDII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~-~~~~~ly~G~v~~~~~P~Rd 549 (663)
+++|||||++||.|+|+|+|+||+++++|+.+|++++|+||+|||+|||+++|+++|+. ...+.+|+|++..+..|+|+
T Consensus 441 a~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd 520 (636)
T PLN03133 441 ARTYGDIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRN 520 (636)
T ss_pred HHHcCCeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999987 66778999999999999999
Q ss_pred CCCCcccCCCCCCCCCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeeeccCCccccC
Q 006036 550 KDSKWYISNEEWPHSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHYMSDDRFYNA 629 (663)
Q Consensus 550 ~~~KwyVs~eeyp~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~~~rf~~~ 629 (663)
+.+|||||+++||++.|||||+|+|||||+|+|++|+.+++...+++|++||||||+|++++++.|+++.|.++.+++..
T Consensus 521 ~~sKWYVs~~eyp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~ 600 (636)
T PLN03133 521 PDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNE 600 (636)
T ss_pred CCCCCCCCHHHCCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCC
Confidence 99999999999999999999999999999999999999765568999999999999999999999999999999999999
Q ss_pred CcccceEEEEecCHHHHHHHHHHhhcCCcCCCCC
Q 006036 630 GCESDYILAHYQGPRMVLCLWEKLQKDHRAFCCE 663 (663)
Q Consensus 630 ~C~~~~I~~Hy~sP~~M~~lW~~l~~~~~~~Cc~ 663 (663)
+|..++|++|+++|++|.++|++++++++++||+
T Consensus 601 ~C~~~~i~~H~~sP~eM~~lW~~l~~~~~~~Cc~ 634 (636)
T PLN03133 601 GCKDGYVVAHYQSPREMLCLWQKLQEGKRATCCG 634 (636)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHHhccCCCCccC
Confidence 9999999999999999999999999999999997
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-59 Score=504.54 Aligned_cols=332 Identities=33% Similarity=0.530 Sum_probs=292.8
Q ss_pred cCCCCCCCCcEEEEEEEecCeEEEEeCCeEeEEeeccccCCCCceEEEEEECCeeeeecccCCCCCCCCcccccchhhhc
Q 006036 327 SNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEGLPVSEDFDFIVDVEHLK 406 (663)
Q Consensus 327 ~~fPF~~G~~F~l~i~~~~~gf~v~VnG~h~~sF~yR~~l~~~~v~~l~i~Gdv~l~sV~a~~lP~~~~~~~~~~~~~l~ 406 (663)
+.+|+..+..|+.++.++.+++++.+++++.++|.++...+.+..++...++.+..++......+++...-. .....+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 84 (349)
T KOG2287|consen 6 FLFPLLPGKRFVSTLRLVLEGLQISEPLRLLTSFLLLPTIKNCLATGWAFSTPLLLTGDFGSSFPLSFADFQ-KFFYLLY 84 (349)
T ss_pred ccccccccchhhhhhhhhheeeeeccccccCCcccccCCCcccccccccccCCccccCcccccccccchhhc-cChhhhc
Confidence 578999999999999999999999999999999999998788899999999999888888777777654211 1234445
Q ss_pred CCCCCCC--CeEEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCCh-hhhHHHHHHHhhcCCEEEEeec
Q 006036 407 APLISRK--RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNR-QVNFELWKEAQAYGDIQIMPFV 483 (663)
Q Consensus 407 ~p~~~~~--~v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~-~~~~~L~~Ea~~ygDII~ldf~ 483 (663)
.|+.+.. .++|+|+|.|+++|++||++||+|||+...+++++|+++|++|.+.++ .++..|.+|++.|||||++||.
T Consensus 85 ~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~ 164 (349)
T KOG2287|consen 85 LPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFE 164 (349)
T ss_pred CChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecc
Confidence 5655522 489999999999999999999999999998889999999999999875 5688999999999999999999
Q ss_pred ccCCcchHHHHHHHHhhh-ccCCCcEEEEeCCceeeeHHHHHHHhhcC--CCCCeeEEeeeCCCCCccCCCCCcccCCCC
Q 006036 484 DYYSLISLKTIAICIFGT-KILPAKYIMKTDDDAFVRIDEVLSNLKEK--PSNGLLFGLMSYDSSPQRDKDSKWYISNEE 560 (663)
Q Consensus 484 DsY~nLtlKtla~l~w~~-~~~~akyvlKvDDDtfVnvd~Ll~~L~~~--~~~~ly~G~v~~~~~P~Rd~~~KwyVs~ee 560 (663)
|+|.|+|+||++++.|+. +|++|+||||+|||+||++++|+.+|.+. +...+|+|++..+..|+|++.+|||||+++
T Consensus 165 Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~ 244 (349)
T KOG2287|consen 165 DTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESE 244 (349)
T ss_pred cchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHH
Confidence 999999999999999985 59999999999999999999999999984 788999999999999999999999999999
Q ss_pred CCCCCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeeeccC----CccccCCcccceE
Q 006036 561 WPHSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHYMSD----DRFYNAGCESDYI 636 (663)
Q Consensus 561 yp~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~~----~rf~~~~C~~~~I 636 (663)
||++.|||||+|+|||+|+|+|++|+++ +.+.+++++|||+||+|+++.. |+.+...+. ...++.+|..+++
T Consensus 245 y~~~~YP~Y~sG~gYvis~~~a~~l~~~--s~~~~~~~iEDV~~g~~l~~~~--gi~~~~~~~~~~~~~~~~~~~~~~~~ 320 (349)
T KOG2287|consen 245 YPCSVYPPYASGPGYVISGDAARRLLKA--SKHLKFFPIEDVFVGGCLAEDL--GIKPVNHPGFFEIPLSFDPCCYRDLL 320 (349)
T ss_pred CCCCCCCCcCCCceeEecHHHHHHHHHH--hcCCCccchHHHHHHHHHHHhc--CCCcccCcccccccccCCCCcccceE
Confidence 9999999999999999999999999997 5789999999999999999974 444432222 1223566778999
Q ss_pred EEEecCHHHHHHHHHHhhcCCcCCCCC
Q 006036 637 LAHYQGPRMVLCLWEKLQKDHRAFCCE 663 (663)
Q Consensus 637 ~~Hy~sP~~M~~lW~~l~~~~~~~Cc~ 663 (663)
++|+++|.+|.++|+.++...+..||+
T Consensus 321 ~~H~~~p~e~~~~w~~~~~~~~~~c~~ 347 (349)
T KOG2287|consen 321 AVHRLSPNEMIYLWKKLKDLANLKCKN 347 (349)
T ss_pred EEecCCHHHHHHHHHHhhccccccccc
Confidence 999999999999999999866678875
No 3
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.1e-49 Score=427.60 Aligned_cols=245 Identities=25% Similarity=0.398 Sum_probs=213.8
Q ss_pred cCCCCceEEEEEECCeeeeecccCCCCCCCCcccccchhhhcCCCCCCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCC
Q 006036 365 KLEPWSVTGVKVAGGVDLFSAFAEGLPVSEDFDFIVDVEHLKAPLISRKRLVMLIGVFSTGNNFERRMALRRSWMQYPAV 444 (663)
Q Consensus 365 ~l~~~~v~~l~i~Gdv~l~sV~a~~lP~~~~~~~~~~~~~l~~p~~~~~~v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v 444 (663)
.||+|.+++.+ +.++.++++|++++++. + |...+++++|+|+|+|+++|++||++||+|||+....
T Consensus 103 ~le~el~~~~~------~~~~~~~~~~~~~~~~~------~--~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~ 168 (408)
T PLN03193 103 NLEMELAAARA------AQESILNGSPISEDLKK------T--QSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEK 168 (408)
T ss_pred HHhHHHHHHHh------hhhhhccCCCccccccc------c--CCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCccc
Confidence 57777887776 67888899999988753 1 4334678999999999999999999999999986432
Q ss_pred -----CCCCeEEEEEEeccC--ChhhhHHHHHHHhhcCCEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCcee
Q 006036 445 -----RSGDLAVRFFIGLHK--NRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAF 517 (663)
Q Consensus 445 -----~~~~V~v~FvvG~~~--~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtf 517 (663)
....++++||+|.+. +..++..|++|+++|||||++||.|+|.|||+||++++.|+..+++++|+||+|||+|
T Consensus 169 ~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvf 248 (408)
T PLN03193 169 RKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVH 248 (408)
T ss_pred ccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCce
Confidence 135799999999987 5689999999999999999999999999999999999999999999999999999999
Q ss_pred eeHHHHHHHhhc-CCCCCeeEEeeeCCCCCccCCCCCcccCCCCC----CCCCCCCCcCCCccccCHHHHHHHHhhhccc
Q 006036 518 VRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWYISNEEW----PHSSYPPWAHGPGYIISRDIAKFIVQGHQER 592 (663)
Q Consensus 518 Vnvd~Ll~~L~~-~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eey----p~~~YPpYc~G~GYVLSrdla~~I~~~~~~~ 592 (663)
||+++|+.+|.. ....++|+|++.. .|+|++.++||+++++| +.+.|||||.|+|||||+|+|+.|+.+ ..
T Consensus 249 Vnv~~L~~~L~~~~~~~rlYiG~m~~--gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n--~~ 324 (408)
T PLN03193 249 VNIATLGETLVRHRKKPRVYIGCMKS--GPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISIN--QH 324 (408)
T ss_pred EcHHHHHHHHHhcCCCCCEEEEeccc--CccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhC--hh
Confidence 999999999987 4445699999975 48898888888888888 568999999999999999999999976 45
Q ss_pred ccCCCCcchhHHHHHHHHhhcCCCeeeeccCCcccc---CCcc
Q 006036 593 DLKLFKLEDVAMGIWIEQFKNTGQEVHYMSDDRFYN---AGCE 632 (663)
Q Consensus 593 ~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~~~rf~~---~~C~ 632 (663)
.++.|++|||+||+|+. |++|+|+|+.+||. ..|.
T Consensus 325 ~L~~y~~EDV~vG~Wl~-----~L~V~~vdd~~fcc~~~~~C~ 362 (408)
T PLN03193 325 VLHKYANEDVSLGSWFI-----GLDVEHIDDRRLCCGTPPDCE 362 (408)
T ss_pred hhcccCcchhhhhhHhc-----cCCceeeecccccCCCCcccc
Confidence 78899999999999996 45799999999985 4575
No 4
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=4.5e-44 Score=353.71 Aligned_cols=184 Identities=38% Similarity=0.633 Sum_probs=171.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEEEeccC--ChhhhHHHHHHHhhcCCEEEEeecccCCcchHHHHHHHHhhh-ccCC
Q 006036 429 ERRMALRRSWMQYPAVRSGDLAVRFFIGLHK--NRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGT-KILP 505 (663)
Q Consensus 429 ~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~--~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtla~l~w~~-~~~~ 505 (663)
+||++||+||++........++++||+|.+. +..++..|.+|+++|+|||++||.|+|.|+|+||+++++|+. +|++
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999998877778999999999998 677888899999999999999999999999999999999984 5777
Q ss_pred CcEEEEeCCceeeeHHHHHHHhhcC---CCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCCCCcCCCccccCHHHH
Q 006036 506 AKYIMKTDDDAFVRIDEVLSNLKEK---PSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYPPWAHGPGYIISRDIA 582 (663)
Q Consensus 506 akyvlKvDDDtfVnvd~Ll~~L~~~---~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YPpYc~G~GYVLSrdla 582 (663)
++|++|+|||+|||+++|.++|... ..+..++|.+....+|+|++.+|||+|+++||.+.|||||+|+||+||+++|
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~~v 160 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSDVV 160 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeecccccCCCcCCCCeEEecHHHH
Confidence 9999999999999999999999884 6678999999988999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccccCCCCcchhHHHHHHHHhhcC
Q 006036 583 KFIVQGHQERDLKLFKLEDVAMGIWIEQFKNT 614 (663)
Q Consensus 583 ~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~ 614 (663)
+.|+.++ ..++.+++|||++|+|+.++++.
T Consensus 161 ~~i~~~~--~~~~~~~~eDv~iGi~~~~~~i~ 190 (195)
T PF01762_consen 161 KRIYKAS--SHTPFFPLEDVFIGILAEKLGIK 190 (195)
T ss_pred HHHHHHh--hcCCCCCchHHHHHHHHHHCCCC
Confidence 9999984 57799999999999999998643
No 5
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=1.1e-36 Score=323.28 Aligned_cols=229 Identities=24% Similarity=0.331 Sum_probs=193.9
Q ss_pred CCCeEEEEEEecCCCc--HHHHHHHHHHhcCCCCCC------CCCeEEEEEEeccCCh--hhhHHHHHHHhhcCCEEEEe
Q 006036 412 RKRLVMLIGVFSTGNN--FERRMALRRSWMQYPAVR------SGDLAVRFFIGLHKNR--QVNFELWKEAQAYGDIQIMP 481 (663)
Q Consensus 412 ~~~v~LlI~V~Sa~~n--~~rR~aIR~TW~~~~~v~------~~~V~v~FvvG~~~~~--~~~~~L~~Ea~~ygDII~ld 481 (663)
.++..++++|+|..++ +.||+++|+||+++..+. .+.+.++||+|.+++. +++++|++|+++|+|||++|
T Consensus 77 ~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilp 156 (382)
T PTZ00210 77 AQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLP 156 (382)
T ss_pred cCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEe
Confidence 5689999999999998 999999999999998876 7889999999999987 89999999999999999999
Q ss_pred e------------------cccCCcchHHHHHHHHhhhc-cCCCcEEEEeCCceeeeHHHHHHHhhcCCCCCeeEEeeeC
Q 006036 482 F------------------VDYYSLISLKTIAICIFGTK-ILPAKYIMKTDDDAFVRIDEVLSNLKEKPSNGLLFGLMSY 542 (663)
Q Consensus 482 f------------------~DsY~nLtlKtla~l~w~~~-~~~akyvlKvDDDtfVnvd~Ll~~L~~~~~~~ly~G~v~~ 542 (663)
| .|+|.++|+||++++.|+.+ |++++||||+|||+|||+++++++|+..+++++|+|++..
T Consensus 157 f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~prr~LY~G~v~~ 236 (382)
T PTZ00210 157 TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVMPRHGLYMGRYNY 236 (382)
T ss_pred cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhCCCCceEEEeeCC
Confidence 9 56667899999999999954 7899999999999999999999999887888899999998
Q ss_pred CCCCccCCCCCcccCCCCCCCCCCCCCcCCCccccCHHHHHHHHhhhccccc---------------CCCCcchhHHHHH
Q 006036 543 DSSPQRDKDSKWYISNEEWPHSSYPPWAHGPGYIISRDIAKFIVQGHQERDL---------------KLFKLEDVAMGIW 607 (663)
Q Consensus 543 ~~~P~Rd~~~KwyVs~eeyp~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l---------------~~f~lEDV~iGi~ 607 (663)
...|.|++ +||||+|+||+||+|+|+.|++.....++ -.+..||+++|.+
T Consensus 237 ~~~p~Rd~---------------~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDiMvG~v 301 (382)
T PTZ00210 237 YNRIWRRN---------------QLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDVMVGMI 301 (382)
T ss_pred CCccccCC---------------CCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHHHHHHH
Confidence 87788863 49999999999999999999997322222 2357899999999
Q ss_pred HHH-hhcCCCeeeecc--CCcccc---CCcc----cceEEEEecCHHHHHHHHHHhhcCC
Q 006036 608 IEQ-FKNTGQEVHYMS--DDRFYN---AGCE----SDYILAHYQGPRMVLCLWEKLQKDH 657 (663)
Q Consensus 608 L~~-l~~~gi~v~~~~--~~rf~~---~~C~----~~~I~~Hy~sP~~M~~lW~~l~~~~ 657 (663)
|+. ++..+ ..++. ..+|++ ..|. .+.|++|...+++...+...+++..
T Consensus 302 Lr~~~k~~~--l~~V~~~~c~Fhd~~~~~~~~~v~~~sVvvHhike~dYa~Lm~~F~n~~ 359 (382)
T PTZ00210 302 LREKVVYRN--LISVEMGRCHFHNAGKFGVRKSVRNMSVVIHHIQEADYEMLMDYFPEGV 359 (382)
T ss_pred HHHhcCcCc--eeeeccccccceecCCCCCccccccceEEEEecCHHHHHHHHHHhcCCC
Confidence 954 44333 32333 345543 3443 5789999999999999999998753
No 6
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-35 Score=296.01 Aligned_cols=241 Identities=25% Similarity=0.447 Sum_probs=206.0
Q ss_pred CCCeEEEEEEecCCCcHHHHHHHHHHhcCCCC-----CCCCCeEEEEEEec-cCChhhhHHHHHHHhhcCCEEEEe-ecc
Q 006036 412 RKRLVMLIGVFSTGNNFERRMALRRSWMQYPA-----VRSGDLAVRFFIGL-HKNRQVNFELWKEAQAYGDIQIMP-FVD 484 (663)
Q Consensus 412 ~~~v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~-----v~~~~V~v~FvvG~-~~~~~~~~~L~~Ea~~ygDII~ld-f~D 484 (663)
.++++++|+|.|+++..+||+++|+|||.... -....|.++|++|. +.+.+...+|++|.++|+|.+.+| ..|
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E 87 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEE 87 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHH
Confidence 56899999999999999999999999999722 23678999999999 667889999999999999999999 999
Q ss_pred cCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeeEEeeeCCCCCccCCCCCcccCCCCCC-
Q 006036 485 YYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWP- 562 (663)
Q Consensus 485 sY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~-~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp- 562 (663)
.|.+|+.||++++.++....+++|++|+|||+|||++.|...|.. .....+|+|++..+ +++-.+++|||-|+ |.
T Consensus 88 ~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg-~v~~~~~~kw~Epe--Wkf 164 (274)
T KOG2288|consen 88 AYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSG-PVLTQPGGKWYEPE--WKF 164 (274)
T ss_pred HHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCC-ccccCCCCcccChh--hhc
Confidence 999999999999999999999999999999999999999999998 44477999998865 45556789999887 43
Q ss_pred CCC--CCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeeeccCCccccCCcc--cceEEE
Q 006036 563 HSS--YPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHYMSDDRFYNAGCE--SDYILA 638 (663)
Q Consensus 563 ~~~--YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~~~rf~~~~C~--~~~I~~ 638 (663)
.+. |.+|+.|++|+||+|+|..|..+ ...+..+..|||.+|-|+. |++|+|+|+.|+|...|. .+.+.+
T Consensus 165 g~~g~YfrhA~G~~YvlS~dLa~yi~in--~~lL~~y~nEDVSlGaW~~-----gldV~h~dd~rlC~~~~~~~~~~~~~ 237 (274)
T KOG2288|consen 165 GDNGNYFRHATGGGYVLSKDLATYISIN--RQLLHKYANEDVSLGAWMI-----GLDVEHVDDPRLCCSTPKALAGMVCA 237 (274)
T ss_pred CcccccchhccCceEEeeHHHHHHHHHh--HHHHHhhccCCcccceeee-----eeeeeEecCCcccccchhhhccceee
Confidence 333 99999999999999999999987 4568889999999999987 567999999999977772 344443
Q ss_pred Ee---------cCHHHHHHHHHHhhcCCcCCCC
Q 006036 639 HY---------QGPRMVLCLWEKLQKDHRAFCC 662 (663)
Q Consensus 639 Hy---------~sP~~M~~lW~~l~~~~~~~Cc 662 (663)
+. .+..+|..+++.=-.+..+.||
T Consensus 238 ~~~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~ 270 (274)
T KOG2288|consen 238 ASFDWKCSGLCKSEDRMLEVHKYDWEGKPATCC 270 (274)
T ss_pred eeecccccccCchHHHHhHHHHhhccCCCcccC
Confidence 32 3456788888776666778888
No 7
>smart00276 GLECT Galectin. Galectin - galactose-binding lectin
Probab=99.97 E-value=1.8e-30 Score=241.79 Aligned_cols=127 Identities=36% Similarity=0.519 Sum_probs=117.6
Q ss_pred eEEeeCCCCCCCcEEEEEEEeCCCCCceEEEcccCCCCCCCCCCeeEEEeeeCCCCCCCCCCeEEEcCccCCCCCcccee
Q 006036 182 LIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKEER 261 (663)
Q Consensus 182 ~~~~lpcGL~~Gs~itv~G~p~~~~~~F~i~L~~~~~~~~~~~~i~LH~NpR~~gd~~~~~pvIv~Ns~~~~~~WG~eeR 261 (663)
|+..||+||.+|+.|+|.|+|..++++|.|||+.+ +++|+|||||||.+ .+||+||+.+ |.||.|||
T Consensus 1 ~~~~lp~~l~~G~~i~i~G~~~~~~~~F~inl~~~------~~di~lH~n~rf~~------~~iV~Ns~~~-g~Wg~Eer 67 (128)
T smart00276 1 FTLPIPGGLKPGQTLTVRGIVLPDAKRFSINLLTG------GDDIALHFNPRFNE------NKIVCNSKLN-GSWGSEER 67 (128)
T ss_pred CcccCCCCCCCCCEEEEEEEECCCCCEEEEEeecC------CCCEEEEEeccCCC------CEEEEeCccC-CccchheE
Confidence 45789999999999999999999999999999983 35999999999984 3799999997 89999999
Q ss_pred cCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCcchhcccccccCCCCcCCCCCCCCcEEEEE
Q 006036 262 CPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTTTI 341 (663)
Q Consensus 262 ~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l~i 341 (663)
+ ..|||++|++|+|+|
T Consensus 68 ~----------------------------------------------------------------~~~Pf~~g~~F~l~i 83 (128)
T smart00276 68 E----------------------------------------------------------------GGFPFQPGQPFDLTI 83 (128)
T ss_pred c----------------------------------------------------------------CCCCCCCCCEEEEEE
Confidence 8 368999999999999
Q ss_pred EEecCeEEEEeCCeEeEEeeccccCCCCceEEEEEECCeeeeeccc
Q 006036 342 WVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFA 387 (663)
Q Consensus 342 ~~~~~gf~v~VnG~h~~sF~yR~~l~~~~v~~l~i~Gdv~l~sV~a 387 (663)
.++.++|+|+|||+|+++|+||.+++ .|+.|.|.||+.|++|.+
T Consensus 84 ~~~~~~f~i~vng~~~~~f~~R~~~~--~i~~l~v~Gdv~l~~v~~ 127 (128)
T smart00276 84 IVQPDHFQIFVNGVHITTFPHRLPLE--SIDYLSINGDVQLTSVSF 127 (128)
T ss_pred EEcCCEEEEEECCEeEEEecCCCCcc--cEeEEEEeCCEEEEEEEE
Confidence 99999999999999999999998765 999999999999999975
No 8
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=99.96 E-value=2.8e-29 Score=233.22 Aligned_cols=126 Identities=36% Similarity=0.505 Sum_probs=116.7
Q ss_pred eEEeeCCCCCCCcEEEEEEEeCCCCCceEEEcccCCCCCCCCCCeeEEEeeeCCCCCCCCCCeEEEcCccCCCCCcccee
Q 006036 182 LIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKEER 261 (663)
Q Consensus 182 ~~~~lpcGL~~Gs~itv~G~p~~~~~~F~i~L~~~~~~~~~~~~i~LH~NpR~~gd~~~~~pvIv~Ns~~~~~~WG~eeR 261 (663)
|...||+||.+|+.|+|.|+|..++++|.|||+++ ..+|+|||||||.. .+||+||+.+ |.||.|||
T Consensus 2 ~~~~l~~~l~~G~~i~i~G~~~~~~~~f~Inl~~~------~~~i~lH~n~rf~~------~~IV~Ns~~~-g~Wg~Eer 68 (127)
T cd00070 2 YKLPLPGGLKPGSTLTVKGRVLPNAKRFSINLGTG------SSDIALHFNPRFDE------NVIVRNSFLN-GNWGPEER 68 (127)
T ss_pred cccccCCCCcCCCEEEEEEEECCCCCEEEEEEecC------CCCEEEEEeeeCCC------CEEEEcCCCC-CEecHhhc
Confidence 56789999999999999999999999999999983 23899999999995 4799999998 89999999
Q ss_pred cCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCcchhcccccccCCCCcCCCCCCCCcEEEEE
Q 006036 262 CPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTTTI 341 (663)
Q Consensus 262 ~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l~i 341 (663)
+. .|||.+|++|+|+|
T Consensus 69 ~~----------------------------------------------------------------~~pf~~g~~F~l~i 84 (127)
T cd00070 69 SG----------------------------------------------------------------GFPFQPGQPFELTI 84 (127)
T ss_pred cC----------------------------------------------------------------CCCCCCCCeEEEEE
Confidence 93 68999999999999
Q ss_pred EEecCeEEEEeCCeEeEEeeccccCCCCceEEEEEECCeeeeecc
Q 006036 342 WVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAF 386 (663)
Q Consensus 342 ~~~~~gf~v~VnG~h~~sF~yR~~l~~~~v~~l~i~Gdv~l~sV~ 386 (663)
.++.++|+|.|||+|+++|+||.++ ++|+.|.|.||+.|++|.
T Consensus 85 ~~~~~~f~i~vng~~~~~F~~R~~~--~~i~~l~v~Gdv~i~~v~ 127 (127)
T cd00070 85 LVEEDKFQIFVNGQHFFSFPHRLPL--ESIDYLSINGDVSLTSVE 127 (127)
T ss_pred EEcCCEEEEEECCEeEEEecCcCCh--hhEEEEEEeCCEEEEEeC
Confidence 9999999999999999999999866 599999999999999873
No 9
>PF00337 Gal-bind_lectin: Galactoside-binding lectin; InterPro: IPR001079 Galectins (also known as galaptins or S-lectin) are a family of proteins defined by having at least one characteristic carbohydrate recognition domain (CRD) with an affinity for beta-galactosides and sharing certain sequence elements. Members of the galectins family are found in mammals, birds, amphibians, fish, nematodes, sponges, and some fungi. Galectins are known to carry out intra- and extracellular functions through glycoconjugate-mediated recogntion. From the cytosol they may be secreted by non-classical pathways, but they may also be targeted to the nucleus or specific sub-cytosolic sites. Within the same peptide chain some galectins have a CRD with only a few additional amino acids, whereas others have two CRDs joined by a link peptide, and one (galectin-3) has one CRD joined to a different type of domain [, ]. The galectin carbohydrate recognition domain (CRD) is a beta-sandwich of about 135 amino acid. The two sheets are slightly bent with 6 strands forming the concave side and 5 strands forming the convex side. The concave side forms a groove in which carbohydrate is bound, and which is long enough to hold about a linear tetrasaccharide [, ].; GO: 0005529 sugar binding; PDB: 2WSU_B 2WT0_A 2WT1_A 2WT2_B 2WSV_A 1HLC_A 2ZGQ_A 3M3Q_B 1WW5_C 3M3E_A ....
Probab=99.96 E-value=2e-29 Score=235.01 Aligned_cols=133 Identities=34% Similarity=0.530 Sum_probs=119.6
Q ss_pred ceEEeeCCCCCCCcEEEEEEEeCCCCCceEEEcccCCCCCCCCCCeeEEEeeeCCCCCCCCCCeEEEcCccCCCCCccce
Q 006036 181 RLIIEVPCGLVEDSSITLVGIPDGRYGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKEE 260 (663)
Q Consensus 181 ~~~~~lpcGL~~Gs~itv~G~p~~~~~~F~i~L~~~~~~~~~~~~i~LH~NpR~~gd~~~~~pvIv~Ns~~~~~~WG~ee 260 (663)
+|++.||+||.+|+.|+|.|++..++++|.|||+++. .++.++++|||||||+. +.+||+||+.+ |.||.||
T Consensus 1 pf~~~l~~~l~~G~~i~i~G~~~~~~~~f~inl~~~~--~~~~~~i~lH~~~rf~~-----~~~iv~Ns~~~-g~Wg~Ee 72 (133)
T PF00337_consen 1 PFTARLPGGLSPGDSIIIRGTVPPDAKRFSINLQTGP--NDPDDDIALHFNPRFDE-----QNVIVRNSRIN-GKWGQEE 72 (133)
T ss_dssp SEEEEETTEEETTEEEEEEEEEBTTSSBEEEEEEES---STTTTEEEEEEEEECTT-----EEEEEEEEEET-TEE-SEE
T ss_pred CceEEcCCCCCCCcEEEEEEEECCCCCEEEEEecCCC--cCCCCCEEEEEEEEeCC-----CceEEEeceEC-CEeccce
Confidence 4889999999999999999999999999999999964 33578999999999995 24799999998 8899999
Q ss_pred ecCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCcchhcccccccCCCCcCCCCCCCCcEEEE
Q 006036 261 RCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTTT 340 (663)
Q Consensus 261 R~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l~ 340 (663)
|. ..|||.+|++|+|+
T Consensus 73 ~~----------------------------------------------------------------~~~pf~~g~~F~i~ 88 (133)
T PF00337_consen 73 RE----------------------------------------------------------------SPFPFQPGQPFEIR 88 (133)
T ss_dssp EE----------------------------------------------------------------SSTSSTTTSEEEEE
T ss_pred ee----------------------------------------------------------------eeeeecCCceEEEE
Confidence 96 36999999999999
Q ss_pred EEEecCeEEEEeCCeEeEEeeccccCCCCceEEEEEECCeeeeeccc
Q 006036 341 IWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFA 387 (663)
Q Consensus 341 i~~~~~gf~v~VnG~h~~sF~yR~~l~~~~v~~l~i~Gdv~l~sV~a 387 (663)
|.++.++|+|+|||+|+++|+||.++ .+|++|.|.|||+|+||.+
T Consensus 89 I~~~~~~f~I~vng~~~~~F~~R~~~--~~i~~l~i~Gdv~i~~v~~ 133 (133)
T PF00337_consen 89 IRVEEDGFKIYVNGKHFCSFPHRLPL--SSIDYLQIQGDVQIYSVEF 133 (133)
T ss_dssp EEEESSEEEEEETTEEEEEEE-SSCG--GGEEEEEEEESEEEEEEEE
T ss_pred EEEecCeeEEEECCeEEEEeeCcCCH--HHcCEEEEECCEEEEEEEC
Confidence 99999999999999999999999876 5999999999999999964
No 10
>KOG3587 consensus Galectin, galactose-binding lectin [Extracellular structures]
Probab=99.92 E-value=7.1e-25 Score=208.43 Aligned_cols=135 Identities=30% Similarity=0.395 Sum_probs=121.3
Q ss_pred ceEEeeCCCCCCCcEEEEEEEeCCC-CCceEEEcccCCCCCCCCCCeeEEEeeeCCCCCCCCCCeEEEcCccCCCCCccc
Q 006036 181 RLIIEVPCGLVEDSSITLVGIPDGR-YGSFQIELIGSQLSGESNPPIILHYNVSLPGDNMTEEPFIIQNSWTNELGWGKE 259 (663)
Q Consensus 181 ~~~~~lpcGL~~Gs~itv~G~p~~~-~~~F~i~L~~~~~~~~~~~~i~LH~NpR~~gd~~~~~pvIv~Ns~~~~~~WG~e 259 (663)
.+...+++||.+|+.+++.|.+..+ .++|.++++.+..... +.+|+|||||||++. .|||||+.+ |.||.|
T Consensus 5 p~~~~~~~~l~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~dia~Hfnprf~~~------~VVrNs~~~-g~Wg~e 76 (143)
T KOG3587|consen 5 PFPVPIPSGLPPGSQVTIKGLVLYGIPKRFAVNLRFGTNLDS-DSDIALHFNPRFDEK------GVVRNSLIN-GEWGLE 76 (143)
T ss_pred ccccccccCcCCCcEEEEEEEEcccCCCcceeeeEeecccCC-CCcEEEEEeccCCCC------eEEEecccC-CccCch
Confidence 4666789999999999999999865 7899999988655555 677999999999965 399999987 999999
Q ss_pred eecCCCCCCCcccchhhhhhhhhhhccccccccCCCCCCCCCccccCCCCCCcchhcccccccCCCCcCCCCCCCCcEEE
Q 006036 260 ERCPAHGSSNTLKVDELVLCNEQVLRRSVEENQNTSHPTPSSDMLANAPTPSSDMLANASRVGAHETSNFPFVDGNPFTT 339 (663)
Q Consensus 260 eR~~~~~~~~~~~vd~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fPF~~G~~F~l 339 (663)
||.. .+||+.|++|.|
T Consensus 77 E~~~----------------------------------------------------------------~~PF~~g~~F~l 92 (143)
T KOG3587|consen 77 EREG----------------------------------------------------------------GNPFQPGQPFDL 92 (143)
T ss_pred hhcC----------------------------------------------------------------CCCCCCCCeEEE
Confidence 9984 689999999999
Q ss_pred EEEEecCeEEEEeCCeEeEEeeccccCCCCceEEEEEECCeeeeecccCC
Q 006036 340 TIWVGLDGFHMTVNGRHETSLAYREKLEPWSVTGVKVAGGVDLFSAFAEG 389 (663)
Q Consensus 340 ~i~~~~~gf~v~VnG~h~~sF~yR~~l~~~~v~~l~i~Gdv~l~sV~a~~ 389 (663)
+|.++.+.|+|.|||.|+++|+||.+.+ .|..|.|.|||+|.+|.++.
T Consensus 93 ~I~~~~~~~~I~VNg~~f~~y~HR~p~~--~v~~l~i~Gdv~i~~i~~~~ 140 (143)
T KOG3587|consen 93 TILVEEDKFQIFVNGVHFADYPHRIPPS--SVQTLQINGDVQITSIEFSN 140 (143)
T ss_pred EEEEccCeEEEEECCEEEEeecCCCCCh--heeEEEEeeeEEEEEEEEEc
Confidence 9999999999999999999999999765 99999999999999998764
No 11
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.70 E-value=4e-17 Score=168.84 Aligned_cols=180 Identities=17% Similarity=0.203 Sum_probs=95.2
Q ss_pred EEEEEEecCCCcHHHH-HHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHHH
Q 006036 416 VMLIGVFSTGNNFERR-MALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTI 494 (663)
Q Consensus 416 ~LlI~V~Sa~~n~~rR-~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtl 494 (663)
+|+|+|+|++++.+.| .+|++||++... ...|+.....+..+.. + ...+++..+....+...+++.+
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~------~~~~ifsd~~d~~l~~----~--~~~~l~~~~~~~~~~~~~~~~~ 74 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCN------KQTFIFSDAEDPSLPT----V--TGVHLVNPNCDAGHCRKTLSCK 74 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSG------GGEEEEESS--HHHHH----H--HGGGEEE-------------HH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcC------CceEEecCcccccccc----c--cccccccCCCcchhhHHHHHHH
Confidence 4789999998765555 899999999754 1245444444433322 1 3446666666666665566666
Q ss_pred HHHHhhh-ccCCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCCCCc-C
Q 006036 495 AICIFGT-KILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYPPWA-H 571 (663)
Q Consensus 495 a~l~w~~-~~~~akyvlKvDDDtfVnvd~Ll~~L~~-~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YPpYc-~ 571 (663)
+...|.. ..++++|++++||||||++++|+++|.. ++.++.|+|...... |..... + ..........| .|+ +
T Consensus 75 ~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~-~~~~~~-~--~~~~~~~~~~~-~f~~G 149 (252)
T PF02434_consen 75 MAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDR-PIEIIH-R--FNPNKSKDSGF-WFATG 149 (252)
T ss_dssp HHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE---------------------------EE-G
T ss_pred HHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCc-cceeec-c--ccccccCcCce-EeeCC
Confidence 5555543 2468899999999999999999999999 889999999876532 222100 0 00000011112 234 6
Q ss_pred CCccccCHHHHHHHHhhhccccc-CCC----CcchhHHHHHHHH-hh
Q 006036 572 GPGYIISRDIAKFIVQGHQERDL-KLF----KLEDVAMGIWIEQ-FK 612 (663)
Q Consensus 572 G~GYVLSrdla~~I~~~~~~~~l-~~f----~lEDV~iGi~L~~-l~ 612 (663)
|+||+||+.++++|......+.+ ... ..||+.||.|++. ++
T Consensus 150 GaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lg 196 (252)
T PF02434_consen 150 GAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLG 196 (252)
T ss_dssp GG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT-
T ss_pred CeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCC
Confidence 79999999999999654322222 222 3799999999998 54
No 12
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.56 E-value=1.7e-14 Score=156.37 Aligned_cols=164 Identities=16% Similarity=0.222 Sum_probs=123.7
Q ss_pred CCCeEEEEEEecCCCcHHHH-HHHHHHhcCCCCCCCCCeEEEEEE---eccCChhhhHHHHHHHhhcCCEEEEeecccCC
Q 006036 412 RKRLVMLIGVFSTGNNFERR-MALRRSWMQYPAVRSGDLAVRFFI---GLHKNRQVNFELWKEAQAYGDIQIMPFVDYYS 487 (663)
Q Consensus 412 ~~~v~LlI~V~Sa~~n~~rR-~aIR~TW~~~~~v~~~~V~v~Fvv---G~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~ 487 (663)
.++.+++|+|.|.+.+...| ..+-+||++... +..|+- ..... .+. .|..+..|+|+
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~------~~~f~s~~~s~~~~------------~f~-~v~~~~~~g~~ 148 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD------KGIFFSPTLSKDDS------------RFP-TVYYNLPDGYR 148 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccC------cceecCccCCCCCC------------cCc-eeeccCCcchH
Confidence 57899999999998776666 699999998654 123443 22211 111 24678899999
Q ss_pred cchHHHHHHHHhhh--ccCCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCC
Q 006036 488 LISLKTIAICIFGT--KILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHS 564 (663)
Q Consensus 488 nLtlKtla~l~w~~--~~~~akyvlKvDDDtfVnvd~Ll~~L~~-~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~ 564 (663)
++..||..+++|.. .-.+++|++|+|||||+.++||..+|.+ +++++.|+|..... .- ..+ |.
T Consensus 149 ~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~---~~-~~~--y~-------- 214 (364)
T KOG2246|consen 149 SLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKS---YF-QNG--YS-------- 214 (364)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccccc---cc-ccc--cc--------
Confidence 99999999999885 3468999999999999999999999999 99999999986532 11 112 22
Q ss_pred CCCCCcCCCccccCHHHHHHHHhhhcc--cccCCC---CcchhHHHHHHHHhhc
Q 006036 565 SYPPWAHGPGYIISRDIAKFIVQGHQE--RDLKLF---KLEDVAMGIWIEQFKN 613 (663)
Q Consensus 565 ~YPpYc~G~GYVLSrdla~~I~~~~~~--~~l~~f---~lEDV~iGi~L~~l~~ 613 (663)
-+|+||++|+.+.+.+++.... ..++.- ..||+-||.||+.+|+
T Consensus 215 -----~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV 263 (364)
T KOG2246|consen 215 -----SGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGV 263 (364)
T ss_pred -----cCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCC
Confidence 2899999999999998876421 112222 3899999999999965
No 13
>PLN03153 hypothetical protein; Provisional
Probab=98.96 E-value=4.1e-09 Score=117.42 Aligned_cols=104 Identities=18% Similarity=0.154 Sum_probs=75.2
Q ss_pred ccCCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCCCCcCCCccccCHH
Q 006036 502 KILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYPPWAHGPGYIISRD 580 (663)
Q Consensus 502 ~~~~akyvlKvDDDtfVnvd~Ll~~L~~-~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YPpYc~G~GYVLSrd 580 (663)
..++++|++++|||||+.+++|++.|.. +++++.|+|......... ..+. |--.-+|+||+||+.
T Consensus 207 ~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~qn----~~f~----------~~fA~GGAG~~LSrP 272 (537)
T PLN03153 207 GLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSAN----SYFS----------HNMAFGGGGIAISYP 272 (537)
T ss_pred hCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEecccccccccc----cccc----------cccccCCceEEEcHH
Confidence 3689999999999999999999999999 899999999876432100 0000 111237999999999
Q ss_pred HHHHHHhhhccccc--CCCCcchhHHHHHHHHhhcCCCeeeecc
Q 006036 581 IAKFIVQGHQERDL--KLFKLEDVAMGIWIEQFKNTGQEVHYMS 622 (663)
Q Consensus 581 la~~I~~~~~~~~l--~~f~lEDV~iGi~L~~l~~~gi~v~~~~ 622 (663)
+++.|......+.. +...-+|..||.|+.++ |+++....
T Consensus 273 Lae~L~~~~d~C~~rY~~~~~gD~rL~~CL~el---GV~LT~~~ 313 (537)
T PLN03153 273 LAEALSRILDDCLDRYPKLYGSDDRLHACITEL---GVPLSREP 313 (537)
T ss_pred HHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHc---CCCceecC
Confidence 99998886432221 22356899999999987 45555433
No 14
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.0012 Score=73.61 Aligned_cols=198 Identities=14% Similarity=0.146 Sum_probs=120.3
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHH
Q 006036 414 RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT 493 (663)
Q Consensus 414 ~v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKt 493 (663)
+=+|+++|+|.. .---+|-+|=+.+- =++.||.+...-. .|.-++..+..|+.-..|+
T Consensus 25 RErl~~aVmte~---tlA~a~NrT~ahhv------prv~~F~~~~~i~-------------~~~a~~~~vs~~d~r~~~~ 82 (681)
T KOG3708|consen 25 RERLMAAVMTES---TLALAINRTLAHHV------PRVHLFADSSRID-------------NDLAQLTNVSPYDLRGQKT 82 (681)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHhhc------ceeEEeecccccc-------------ccHhhccccCccccCcccc
Confidence 345667788722 45567777766532 1355676654321 1222233334444444555
Q ss_pred H-HHHHhh--hccCCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCCCC
Q 006036 494 I-AICIFG--TKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYPPW 569 (663)
Q Consensus 494 l-a~l~w~--~~~~~akyvlKvDDDtfVnvd~Ll~~L~~-~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YPpY 569 (663)
. +.+.+. ....+++|++-+-||||||...|++++.. +-..++|+|.--.+ - ...
T Consensus 83 ~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~------g------------s~r---- 140 (681)
T KOG3708|consen 83 HSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAED------G------------SGR---- 140 (681)
T ss_pred HHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhC------c------------cCc----
Confidence 4 233443 34568999999999999999999999988 77889999932111 0 011
Q ss_pred c-CCCccccCHHHHHHHHhhhcccccC-CCCcchhHHHHHHHHhhcCCCeeeeccCCcc-------------cc---CCc
Q 006036 570 A-HGPGYIISRDIAKFIVQGHQERDLK-LFKLEDVAMGIWIEQFKNTGQEVHYMSDDRF-------------YN---AGC 631 (663)
Q Consensus 570 c-~G~GYVLSrdla~~I~~~~~~~~l~-~f~lEDV~iGi~L~~l~~~gi~v~~~~~~rf-------------~~---~~C 631 (663)
| .|.||+||+.++.++-.+.+.+.-- .-.=.|+.+|.|+......+-...+..-.++ .. +.-
T Consensus 141 C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~e~~~s~a 220 (681)
T KOG3708|consen 141 CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIPEWEGSPA 220 (681)
T ss_pred cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccchhhcCChH
Confidence 5 5889999999999998875322211 2234689999999875432211111111111 00 112
Q ss_pred ccceEEEE-ecCHHHHHHHHHHhhc
Q 006036 632 ESDYILAH-YQGPRMVLCLWEKLQK 655 (663)
Q Consensus 632 ~~~~I~~H-y~sP~~M~~lW~~l~~ 655 (663)
..+.+++| -++|.+|..+.+.+..
T Consensus 221 Fr~A~tv~pv~~p~d~yrLH~yfsr 245 (681)
T KOG3708|consen 221 FRSALTVHPVLSPADMYRLHKYFSR 245 (681)
T ss_pred HhhhhccCccCCHHHHHHHHHHHHH
Confidence 24667888 5889999999988754
No 15
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.24 E-value=2.2 Score=41.61 Aligned_cols=128 Identities=19% Similarity=0.142 Sum_probs=75.9
Q ss_pred eEEEEEEeccCChhhhHHHHHHHhhcC--CEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHH
Q 006036 449 LAVRFFIGLHKNRQVNFELWKEAQAYG--DIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (663)
Q Consensus 449 V~v~FvvG~~~~~~~~~~L~~Ea~~yg--DII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~ 526 (663)
+.++++...+.+.. .+.+++-.+.|. ++......... ....|.-+ +..+......+|++..|+|+.+..+.|...
T Consensus 31 ~eiivVdd~s~d~t-~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l 107 (196)
T cd02520 31 YEILFCVQDEDDPA-IPVVRKLIAKYPNVDARLLIGGEKV-GINPKVNN-LIKGYEEARYDILVISDSDISVPPDYLRRM 107 (196)
T ss_pred eEEEEEeCCCcchH-HHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhHHHHH
Confidence 56666665555433 334444445555 33222221111 12234322 234445567899999999999988888777
Q ss_pred hhc--CCCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHH
Q 006036 527 LKE--KPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAM 604 (663)
Q Consensus 527 L~~--~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~i 604 (663)
+.. ++.-..+.|. ++.|++.++.+++.+.+--- ........||..+
T Consensus 108 ~~~~~~~~~~~v~~~-----------------------------~~~g~~~~~r~~~~~~~ggf---~~~~~~~~eD~~l 155 (196)
T cd02520 108 VAPLMDPGVGLVTCL-----------------------------CAFGKSMALRREVLDAIGGF---EAFADYLAEDYFL 155 (196)
T ss_pred HHHhhCCCCCeEEee-----------------------------cccCceeeeEHHHHHhccCh---HHHhHHHHHHHHH
Confidence 765 3333333332 57899999999999887432 1112234699999
Q ss_pred HHHHHHh
Q 006036 605 GIWIEQF 611 (663)
Q Consensus 605 Gi~L~~l 611 (663)
++-+.+.
T Consensus 156 ~~rl~~~ 162 (196)
T cd02520 156 GKLIWRL 162 (196)
T ss_pred HHHHHHc
Confidence 8887765
No 16
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=93.92 E-value=0.83 Score=45.17 Aligned_cols=185 Identities=16% Similarity=0.111 Sum_probs=88.0
Q ss_pred EEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCE--EEEeecccCCcc--hH
Q 006036 416 VMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDI--QIMPFVDYYSLI--SL 491 (663)
Q Consensus 416 ~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDI--I~ldf~DsY~nL--tl 491 (663)
.+.|+|++.-....-++.|+.--.+. ...+.++++... .+....+.+++-.+.|.++ ..+... .|. +.
T Consensus 2 ~v~Vvip~~~~~~~l~~~l~sl~~~~----~~~~~v~vvd~~-~~~~~~~~~~~~~~~~~~~~v~vi~~~---~~~g~~~ 73 (228)
T PF13641_consen 2 RVSVVIPAYNEDDVLRRCLESLLAQD----YPRLEVVVVDDG-SDDETAEILRALAARYPRVRVRVIRRP---RNPGPGG 73 (228)
T ss_dssp -EEEE--BSS-HHHHHHHHHHHTTSH----HHTEEEEEEEE--SSS-GCTTHHHHHHTTGG-GEEEEE-------HHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHcCC----CCCeEEEEEECC-CChHHHHHHHHHHHHcCCCceEEeecC---CCCCcch
Confidence 46677777665556666666655442 134555554433 3333444455555666653 322221 222 23
Q ss_pred HHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCCCCccCC---CC-----CcccCCCCC
Q 006036 492 KTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQRDK---DS-----KWYISNEEW 561 (663)
Q Consensus 492 Ktla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~~P~Rd~---~~-----KwyVs~eey 561 (663)
|.-+ +.++....+.+|++.+|||+.+..+.|...+.. .+.-..+.|.+.... .+.. .. .|+......
T Consensus 74 k~~a-~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 150 (228)
T PF13641_consen 74 KARA-LNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDN--DRNWLTRLQDLFFARWHLRFRSG 150 (228)
T ss_dssp HHHH-HHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETT--CCCEEEE-TT--S-EETTTS-TT
T ss_pred HHHH-HHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecC--CCCHHHHHHHHHHhhhhhhhhhh
Confidence 3332 344444456999999999999998887776665 455555556553321 1100 00 111100000
Q ss_pred CCCCCC-CCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeee
Q 006036 562 PHSSYP-PWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHY 620 (663)
Q Consensus 562 p~~~YP-pYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~ 620 (663)
. ..+. .++.|++.++.+++++.+--- . . ....||..++..+.+. |..+.|
T Consensus 151 ~-~~~~~~~~~G~~~~~rr~~~~~~g~f-d-~---~~~~eD~~l~~r~~~~---G~~~~~ 201 (228)
T PF13641_consen 151 R-RALGVAFLSGSGMLFRRSALEEVGGF-D-P---FILGEDFDLCLRLRAA---GWRIVY 201 (228)
T ss_dssp --B----S-B--TEEEEEHHHHHHH-S----S---SSSSHHHHHHHHHHHT---T--EEE
T ss_pred h-cccceeeccCcEEEEEHHHHHHhCCC-C-C---CCcccHHHHHHHHHHC---CCcEEE
Confidence 0 1111 456899999999999998642 1 1 3445999999888874 455554
No 17
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=92.90 E-value=1.7 Score=47.50 Aligned_cols=186 Identities=14% Similarity=0.042 Sum_probs=96.8
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCC--EEEEeecccCCcchHH
Q 006036 415 LVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGD--IQIMPFVDYYSLISLK 492 (663)
Q Consensus 415 v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygD--II~ldf~DsY~nLtlK 492 (663)
+.+-|+|++.-....-.+.|+.-=.+ . ...+.++++...+++... +.+++=.+.|.+ |..+. .+.-.....|
T Consensus 41 p~VSViiP~~nee~~l~~~L~Sl~~q-~---Yp~~EIivvdd~s~D~t~-~iv~~~~~~~p~~~i~~v~-~~~~~G~~~K 114 (373)
T TIGR03472 41 PPVSVLKPLHGDEPELYENLASFCRQ-D---YPGFQMLFGVQDPDDPAL-AVVRRLRADFPDADIDLVI-DARRHGPNRK 114 (373)
T ss_pred CCeEEEEECCCCChhHHHHHHHHHhc-C---CCCeEEEEEeCCCCCcHH-HHHHHHHHhCCCCceEEEE-CCCCCCCChH
Confidence 44556666554433344555432222 1 123667676665554432 333333455666 43331 1111222346
Q ss_pred HHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCCCCccCCCCC---cccCCCCCCC----
Q 006036 493 TIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQRDKDSK---WYISNEEWPH---- 563 (663)
Q Consensus 493 tla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~~P~Rd~~~K---wyVs~eeyp~---- 563 (663)
.-+..+ +.+..+.+|++.+|+|+.+..+.|...+.. ++.-....|... ..+......+ .++....+|.
T Consensus 115 ~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~ 191 (373)
T TIGR03472 115 VSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYR--GRPVPGFWSRLGAMGINHNFLPSVMVA 191 (373)
T ss_pred HHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEecccc--CCCCCCHHHHHHHHHhhhhhhHHHHHH
Confidence 544333 334457999999999999999888887766 333344444321 1111100000 0111111110
Q ss_pred --CCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhh
Q 006036 564 --SSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFK 612 (663)
Q Consensus 564 --~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~ 612 (663)
..-+.+|.|+++++.+++.+.+--- . .....-.||+.+|.-+.+.+
T Consensus 192 ~~~~~~~~~~G~~~a~RR~~l~~iGGf-~--~~~~~~~ED~~l~~~i~~~G 239 (373)
T TIGR03472 192 RALGRARFCFGATMALRRATLEAIGGL-A--ALAHHLADDYWLGELVRALG 239 (373)
T ss_pred HhccCCccccChhhheeHHHHHHcCCh-H--HhcccchHHHHHHHHHHHcC
Confidence 0113568899999999999888632 1 11222369999999988653
No 18
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=92.08 E-value=1.8 Score=42.65 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=25.6
Q ss_pred EEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccC
Q 006036 419 IGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHK 459 (663)
Q Consensus 419 I~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~ 459 (663)
|.|.|-+...+||..+.+..... .+.+.||-|...
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~------~~~~e~~~Avdg 38 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL------GINFEFFDAVDG 38 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCceEEEEeecc
Confidence 56777888999999999887653 345667766544
No 19
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.54 E-value=5.9 Score=36.28 Aligned_cols=84 Identities=19% Similarity=0.292 Sum_probs=56.0
Q ss_pred hccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCCCCcCCCcccc
Q 006036 501 TKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYPPWAHGPGYII 577 (663)
Q Consensus 501 ~~~~~akyvlKvDDDtfVnvd~Ll~~L~~---~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YPpYc~G~GYVL 577 (663)
....+.+|++..|||..+..+.+...+.. .+.-..+.|. +.|++.++
T Consensus 70 ~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~ 119 (166)
T cd04186 70 IREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------VSGAFLLV 119 (166)
T ss_pred HhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------CceeeEee
Confidence 33448999999999999998888887764 2222233222 68999999
Q ss_pred CHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeee
Q 006036 578 SRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHY 620 (663)
Q Consensus 578 Srdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~ 620 (663)
++++++.+-- +. .... ...||..+.+-+... |..+.+
T Consensus 120 ~~~~~~~~~~-~~-~~~~-~~~eD~~~~~~~~~~---g~~i~~ 156 (166)
T cd04186 120 RREVFEEVGG-FD-EDFF-LYYEDVDLCLRARLA---GYRVLY 156 (166)
T ss_pred eHHHHHHcCC-CC-hhhh-ccccHHHHHHHHHHc---CCeEEE
Confidence 9999887743 11 1111 256999888766644 445543
No 20
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.10 E-value=2 Score=41.48 Aligned_cols=153 Identities=8% Similarity=0.001 Sum_probs=79.5
Q ss_pred CeEEEEEEeccCChhhhHHHHHHHhhcC-CEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHH
Q 006036 448 DLAVRFFIGLHKNRQVNFELWKEAQAYG-DIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (663)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Ea~~yg-DII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~ 526 (663)
.+.++++-..+.+. ....+++-+.+|. .+.......+. ... ..+..+....+.+|++..|+|..+..+.|...
T Consensus 27 ~~eiiVvddgS~d~-t~~~~~~~~~~~~~~~~~~~~~~~~-G~~----~~~n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~ 100 (214)
T cd04196 27 NDELIISDDGSTDG-TVEIIKEYIDKDPFIIILIRNGKNL-GVA----RNFESLLQAADGDYVFFCDQDDIWLPDKLERL 100 (214)
T ss_pred CeEEEEEeCCCCCC-cHHHHHHHHhcCCceEEEEeCCCCc-cHH----HHHHHHHHhCCCCEEEEECCCcccChhHHHHH
Confidence 45565555444433 3344444444554 33333332221 111 12233445568999999999999998877777
Q ss_pred hhc---CCCCCeeEEeeeC--CCCCccCCCCCcccC----CCCCCCCCCCCCcCCCccccCHHHHHHHHhhhcccccCCC
Q 006036 527 LKE---KPSNGLLFGLMSY--DSSPQRDKDSKWYIS----NEEWPHSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLF 597 (663)
Q Consensus 527 L~~---~~~~~ly~G~v~~--~~~P~Rd~~~KwyVs----~eeyp~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f 597 (663)
+.. .+....+.|.... ....... ...+... ...+.......++.|++.++.+++++.+.... . ...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~--~~~ 175 (214)
T cd04196 101 LKAFLKDDKPLLVYSDLELVDENGNPIG-ESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLELALPFP--D--ADV 175 (214)
T ss_pred HHHHhcCCCceEEecCcEEECCCCCCcc-cccccccccCCccCHHHHHHhCccCCceeeEEHHHHHhhcccc--c--ccc
Confidence 764 3333455554321 1111110 0111000 00111112235668999999999999986531 1 114
Q ss_pred CcchhHHHHHHHHh
Q 006036 598 KLEDVAMGIWIEQF 611 (663)
Q Consensus 598 ~lEDV~iGi~L~~l 611 (663)
..||.++.+.+...
T Consensus 176 ~~~D~~~~~~~~~~ 189 (214)
T cd04196 176 IMHDWWLALLASAF 189 (214)
T ss_pred ccchHHHHHHHHHc
Confidence 68898887776653
No 21
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.88 E-value=5.6 Score=38.82 Aligned_cols=152 Identities=16% Similarity=0.040 Sum_probs=79.4
Q ss_pred eEEEEEEeccCChhhhHHHH-HHHhhcCCEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHh
Q 006036 449 LAVRFFIGLHKNRQVNFELW-KEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNL 527 (663)
Q Consensus 449 V~v~FvvG~~~~~~~~~~L~-~Ea~~ygDII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L 527 (663)
+.++.+-..+.+ ...+.++ .....+..+..++... -.+ ..|.. .+.++......+|++.+|+|+.+..+.|...+
T Consensus 29 ~eiivvdd~s~d-~t~~~~~~~~~~~~~~v~~~~~~~-~~~-~g~~~-a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~ 104 (229)
T cd04192 29 FEVILVDDHSTD-GTVQILEFAAAKPNFQLKILNNSR-VSI-SGKKN-ALTTAIKAAKGDWIVTTDADCVVPSNWLLTFV 104 (229)
T ss_pred eEEEEEcCCCCc-ChHHHHHHHHhCCCcceEEeeccC-ccc-chhHH-HHHHHHHHhcCCEEEEECCCcccCHHHHHHHH
Confidence 555544444333 2333343 1222233455555443 122 22332 23455555689999999999999988887777
Q ss_pred hc--CCCCCeeEEeeeCCCCCccCCCCC-----cccCC---CCCCCCCCCCCcCCCccccCHHHHHHHHhhhcccccCCC
Q 006036 528 KE--KPSNGLLFGLMSYDSSPQRDKDSK-----WYISN---EEWPHSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLF 597 (663)
Q Consensus 528 ~~--~~~~~ly~G~v~~~~~P~Rd~~~K-----wyVs~---eeyp~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f 597 (663)
.. ......+.|..... .+ ...... +.... .......++..+.|+++++.+++.+.+--- ......
T Consensus 105 ~~~~~~~~~~v~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf---~~~~~~ 179 (229)
T cd04192 105 AFIQKEQIGLVAGPVIYF-KG-KSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGF---EGNDHI 179 (229)
T ss_pred HHhhcCCCcEEeeeeeec-CC-ccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCC---cccccc
Confidence 64 33445666654432 11 000000 00000 001123356677899999999999988532 111234
Q ss_pred CcchhHHHHHHH
Q 006036 598 KLEDVAMGIWIE 609 (663)
Q Consensus 598 ~lEDV~iGi~L~ 609 (663)
..||..++.-+.
T Consensus 180 ~~eD~~~~~~~~ 191 (229)
T cd04192 180 ASGDDELLLAKV 191 (229)
T ss_pred ccCCHHHHHHHH
Confidence 567877765444
No 22
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=90.52 E-value=12 Score=37.44 Aligned_cols=180 Identities=13% Similarity=0.051 Sum_probs=87.4
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHH
Q 006036 414 RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT 493 (663)
Q Consensus 414 ~v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKt 493 (663)
...+-|+|++.-....-...|+.-..+... ...+.++++...+.+ .....+.+-.+. .+......+ |. .|.
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~~--~~~~eiivvdd~s~d-~t~~~~~~~~~~--~v~~i~~~~---~~-g~~ 98 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDYP--RDRLEIIVVSDGSTD-GTAEIAREYADK--GVKLLRFPE---RR-GKA 98 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcCC--CCcEEEEEEECCCCc-cHHHHHHHHhhC--cEEEEEcCC---CC-ChH
Confidence 345666676655444444556655554211 112445444433333 222333322222 344433222 21 232
Q ss_pred HHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCCCCccCCCCCcccCCC----CCC-CCCC
Q 006036 494 IAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQRDKDSKWYISNE----EWP-HSSY 566 (663)
Q Consensus 494 la~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~e----eyp-~~~Y 566 (663)
- .+..+......+|++.+|+|+++..+.|.+.+.. ++.-..+.|................+.... .+. ....
T Consensus 99 ~-a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (251)
T cd06439 99 A-ALNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGS 177 (251)
T ss_pred H-HHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCC
Confidence 2 2334444446799999999999997777776666 344456666554321110000011110000 000 1112
Q ss_pred CCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHh
Q 006036 567 PPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQF 611 (663)
Q Consensus 567 PpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l 611 (663)
...+.|+++.+.+++.. .. ......||..++.-+...
T Consensus 178 ~~~~~g~~~~~rr~~~~----~~----~~~~~~eD~~l~~~~~~~ 214 (251)
T cd06439 178 TVGANGAIYAIRRELFR----PL----PADTINDDFVLPLRIARQ 214 (251)
T ss_pred eeeecchHHHhHHHHhc----CC----CcccchhHHHHHHHHHHc
Confidence 34567888878887666 21 112346999998877654
No 23
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=89.85 E-value=6.7 Score=35.47 Aligned_cols=90 Identities=10% Similarity=0.042 Sum_probs=49.8
Q ss_pred HhhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeeEEeeeCCCCC---ccCCCC-C---cccCCCCC-CCCCC
Q 006036 498 IFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSYDSSP---QRDKDS-K---WYISNEEW-PHSSY 566 (663)
Q Consensus 498 ~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~---~~~~~ly~G~v~~~~~P---~Rd~~~-K---wyVs~eey-p~~~Y 566 (663)
.++....+.+|++.+|+|.++..+.|...+.. .+.-..+.|........ ...... + ++.....+ ....+
T Consensus 71 n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (180)
T cd06423 71 NAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGG 150 (180)
T ss_pred HHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecc
Confidence 34444558999999999999988777776444 33333444444322110 100000 0 00000000 11234
Q ss_pred CCCcCCCccccCHHHHHHHHh
Q 006036 567 PPWAHGPGYIISRDIAKFIVQ 587 (663)
Q Consensus 567 PpYc~G~GYVLSrdla~~I~~ 587 (663)
.+++.|.++++++++++.+--
T Consensus 151 ~~~~~g~~~~~~~~~~~~~gg 171 (180)
T cd06423 151 VLVLSGAFGAFRREALREVGG 171 (180)
T ss_pred eeecCchHHHHHHHHHHHhCC
Confidence 567889999999999887653
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=88.57 E-value=2.4 Score=41.84 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=65.9
Q ss_pred hhhccCCCcEEEEeCCceeeeHHHHHHHhhc-C--CCCCeeEEeeeCC-CCC----ccCC--CCCcccCCCCCC-CCCCC
Q 006036 499 FGTKILPAKYIMKTDDDAFVRIDEVLSNLKE-K--PSNGLLFGLMSYD-SSP----QRDK--DSKWYISNEEWP-HSSYP 567 (663)
Q Consensus 499 w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~-~--~~~~ly~G~v~~~-~~P----~Rd~--~~KwyVs~eeyp-~~~YP 567 (663)
.+.+..+.+|++.+|+|+++..+.|...+.. . +.-....|..... ... .+.. ....+....... .....
T Consensus 78 ~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (234)
T cd06421 78 NALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGA 157 (234)
T ss_pred HHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3444447899999999999999888887766 2 3223344432211 100 0000 000000000000 01124
Q ss_pred CCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeeeccC
Q 006036 568 PWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHYMSD 623 (663)
Q Consensus 568 pYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~~ 623 (663)
.++.|++.++++++++.+--- . ..+..||..++.-+.+. |..+.+..+
T Consensus 158 ~~~~g~~~~~r~~~~~~ig~~-~----~~~~~eD~~l~~r~~~~---g~~i~~~~~ 205 (234)
T cd06421 158 AFCCGSGAVVRREALDEIGGF-P----TDSVTEDLATSLRLHAK---GWRSVYVPE 205 (234)
T ss_pred ceecCceeeEeHHHHHHhCCC-C----ccceeccHHHHHHHHHc---CceEEEecC
Confidence 567899999999999887532 1 23457999999877765 455655443
No 25
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.29 E-value=6 Score=37.46 Aligned_cols=110 Identities=9% Similarity=-0.047 Sum_probs=65.0
Q ss_pred HHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCCCCcCCC
Q 006036 497 CIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYPPWAHGP 573 (663)
Q Consensus 497 l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~---~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YPpYc~G~ 573 (663)
+..+....+.+|++..|+|.++..+.+...+.. .+...+++|........... ...+.........-....++.|+
T Consensus 67 ~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 145 (202)
T cd06433 67 MNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRV-IGRRRPPPFLDKFLLYGMPICHQ 145 (202)
T ss_pred HHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCc-ccCCCCcchhhhHHhhcCcccCc
Confidence 445555567899999999999998888887733 45566777765421111111 01111111111222235667888
Q ss_pred ccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHh
Q 006036 574 GYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQF 611 (663)
Q Consensus 574 GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l 611 (663)
+.++++++.+.+-. +. .. +...||..+..-+...
T Consensus 146 ~~~~~~~~~~~~~~-f~-~~--~~~~~D~~~~~r~~~~ 179 (202)
T cd06433 146 ATFFRRSLFEKYGG-FD-ES--YRIAADYDLLLRLLLA 179 (202)
T ss_pred ceEEEHHHHHHhCC-Cc-hh--hCchhhHHHHHHHHHc
Confidence 99999999988753 21 11 2345788766665554
No 26
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=87.52 E-value=3.5 Score=37.40 Aligned_cols=155 Identities=16% Similarity=0.133 Sum_probs=74.9
Q ss_pred EEEEecCCCcHHHH-HHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHHHHH
Q 006036 418 LIGVFSTGNNFERR-MALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAI 496 (663)
Q Consensus 418 lI~V~Sa~~n~~rR-~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtla~ 496 (663)
+|.+.-.+....+- ..+++. . .....++++-..+ ++.....+++-.+....+..+...+.. . .-..
T Consensus 3 vip~~n~~~~l~~~l~sl~~q--~-----~~~~eiivvdd~s-~d~~~~~~~~~~~~~~~i~~i~~~~n~-g----~~~~ 69 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQ--T-----DPDFEIIVVDDGS-TDETEEILEEYAESDPNIRYIRNPENL-G----FSAA 69 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHH--S-----GCEEEEEEEECS--SSSHHHHHHHHHCCSTTEEEEEHCCCS-H----HHHH
T ss_pred EEEeeCCHHHHHHHHHHHhhc--c-----CCCEEEEEecccc-ccccccccccccccccccccccccccc-c----cccc
Confidence 33344344444443 457766 1 1234444444333 444444444444435566655554433 1 1222
Q ss_pred HHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCCCCccCCCCCc---ccCC-----CCCCCCCC
Q 006036 497 CIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQRDKDSKW---YISN-----EEWPHSSY 566 (663)
Q Consensus 497 l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~~P~Rd~~~Kw---yVs~-----eeyp~~~Y 566 (663)
+..+......+|++.+|||.++..+.|..++.. ......++|.........+...... +... .......-
T Consensus 70 ~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
T PF00535_consen 70 RNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWK 149 (169)
T ss_dssp HHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTT
T ss_pred ccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCC
Confidence 334444456679999999999998866666655 3334455555432211111100110 0000 01111223
Q ss_pred CCCcCCCccccCHHHHHHH
Q 006036 567 PPWAHGPGYIISRDIAKFI 585 (663)
Q Consensus 567 PpYc~G~GYVLSrdla~~I 585 (663)
-+|+.|++.++++++.+++
T Consensus 150 ~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 150 ISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp SSEESSSCEEEEEHHHHHC
T ss_pred cccccccEEEEEHHHHHhh
Confidence 4677899999999988764
No 27
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=87.50 E-value=8.1 Score=38.40 Aligned_cols=176 Identities=15% Similarity=0.138 Sum_probs=88.6
Q ss_pred CeEEEEEEeccCChhhhHHHHHHHhhcC-CEEEEeecccCCcchHHHHHHHHhhhcc--CCCcEEEEeCCceeeeHHHHH
Q 006036 448 DLAVRFFIGLHKNRQVNFELWKEAQAYG-DIQIMPFVDYYSLISLKTIAICIFGTKI--LPAKYIMKTDDDAFVRIDEVL 524 (663)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Ea~~yg-DII~ldf~DsY~nLtlKtla~l~w~~~~--~~akyvlKvDDDtfVnvd~Ll 524 (663)
.+.++++-+.+.+......+++=.++++ ++..+... .|.-.|. ..+.++... .+.+|++..|+|+.+..+.|.
T Consensus 28 ~~eiiVvdd~s~D~t~~~~i~~~~~~~~~~i~~i~~~---~~~G~~~-~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~ 103 (236)
T cd06435 28 NFEVIVIDNNTKDEALWKPVEAHCAQLGERFRFFHVE---PLPGAKA-GALNYALERTAPDAEIIAVIDADYQVEPDWLK 103 (236)
T ss_pred CcEEEEEeCCCCchhHHHHHHHHHHHhCCcEEEEEcC---CCCCCch-HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHH
Confidence 4555555555555443333322222333 45443322 2222232 234444333 247999999999999999888
Q ss_pred HHhhc-C-CCCCeeEEeeeCCCCCccCCCCCcccCC--CCC----------CCCCCCCCcCCCccccCHHHHHHHHhhhc
Q 006036 525 SNLKE-K-PSNGLLFGLMSYDSSPQRDKDSKWYISN--EEW----------PHSSYPPWAHGPGYIISRDIAKFIVQGHQ 590 (663)
Q Consensus 525 ~~L~~-~-~~~~ly~G~v~~~~~P~Rd~~~KwyVs~--eey----------p~~~YPpYc~G~GYVLSrdla~~I~~~~~ 590 (663)
..+.. . +.-.++.|... .++....++... ..| ....--.++.|++.++++++.+.+-- +.
T Consensus 104 ~l~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGg-f~ 177 (236)
T cd06435 104 RLVPIFDDPRVGFVQAPQD-----YRDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGG-WD 177 (236)
T ss_pred HHHHHhcCCCeeEEecCcc-----ccCCCccHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHHhCC-CC
Confidence 88766 2 22223333211 111111111000 000 00000135678889999999998743 21
Q ss_pred ccccCCCCcchhHHHHHHHHhhcCCCeeeeccCCccccCCcccceEEEEecCHHHHHHHHHH
Q 006036 591 ERDLKLFKLEDVAMGIWIEQFKNTGQEVHYMSDDRFYNAGCESDYILAHYQGPRMVLCLWEK 652 (663)
Q Consensus 591 ~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~~~rf~~~~C~~~~I~~Hy~sP~~M~~lW~~ 652 (663)
. .+..||+-++.-+.+. |..+.+..+ ...|...|..+..++++
T Consensus 178 -~---~~~~eD~dl~~r~~~~---G~~~~~~~~------------~~~~~~~~~~~~~~~~q 220 (236)
T cd06435 178 -E---WCITEDSELGLRMHEA---GYIGVYVAQ------------SYGHGLIPDTFEAFKKQ 220 (236)
T ss_pred -C---ccccchHHHHHHHHHC---CcEEEEcch------------hhccCcCcccHHHHHHH
Confidence 1 2348999998877765 445554332 12344566666555554
No 28
>PRK11204 N-glycosyltransferase; Provisional
Probab=87.47 E-value=26 Score=38.62 Aligned_cols=186 Identities=13% Similarity=0.048 Sum_probs=97.5
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHH
Q 006036 414 RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT 493 (663)
Q Consensus 414 ~v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKt 493 (663)
.+.+-|+|++.-+...-++.|+.-=.+ ......+ +++....+++..+.+++.+++|..+..+...+ |. .|.
T Consensus 53 ~p~vsViIp~yne~~~i~~~l~sl~~q----~yp~~ei-iVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~~---n~-Gka 123 (420)
T PRK11204 53 YPGVSILVPCYNEGENVEETISHLLAL----RYPNYEV-IAINDGSSDNTGEILDRLAAQIPRLRVIHLAE---NQ-GKA 123 (420)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHhC----CCCCeEE-EEEECCCCccHHHHHHHHHHhCCcEEEEEcCC---CC-CHH
Confidence 345667777654433333333332211 1123343 44544444444555666666677676555332 32 243
Q ss_pred HHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeeEEeeeCCCCCccCCCCCcccC--CCCCCC-----
Q 006036 494 IAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSYDSSPQRDKDSKWYIS--NEEWPH----- 563 (663)
Q Consensus 494 la~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~---~~~~~ly~G~v~~~~~P~Rd~~~KwyVs--~eeyp~----- 563 (663)
- .+..+.+..+.+|++..|+|+.+..+.|...++. ++.-..+.|.... ++.. .|.-. ..+|..
T Consensus 124 ~-aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~-----~~~~-~~~~~~~~~~~~~~~~~~ 196 (420)
T PRK11204 124 N-ALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRI-----RNRS-TLLGRIQVGEFSSIIGLI 196 (420)
T ss_pred H-HHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCcee-----ccch-hHHHHHHHHHHHHhhhHH
Confidence 3 2445555568899999999999999988887765 3322233332211 1110 00000 000100
Q ss_pred ----CC--CCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeeeccC
Q 006036 564 ----SS--YPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHYMSD 623 (663)
Q Consensus 564 ----~~--YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~~ 623 (663)
.. .+..++|++.++.+++++.+--- -...-.||+.++.-+.+. |..+.|..+
T Consensus 197 ~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~-----~~~~~~ED~~l~~rl~~~---G~~i~~~p~ 254 (420)
T PRK11204 197 KRAQRVYGRVFTVSGVITAFRKSALHEVGYW-----STDMITEDIDISWKLQLR---GWDIRYEPR 254 (420)
T ss_pred HHHHHHhCCceEecceeeeeeHHHHHHhCCC-----CCCcccchHHHHHHHHHc---CCeEEeccc
Confidence 00 12234788899999998876321 112346999998887754 556665443
No 29
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=87.40 E-value=32 Score=34.00 Aligned_cols=159 Identities=12% Similarity=0.038 Sum_probs=79.5
Q ss_pred CeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHh
Q 006036 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNL 527 (663)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L 527 (663)
.+.++.+-+.+.+ +....++...+++..+....-... . +. ..+..+....+.+|++.+|||..+..+.|...+
T Consensus 31 ~~evivvd~~s~d-~~~~~~~~~~~~~~~v~~i~~~~~----~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 31 LIEIIVVDGGSTD-GTREIVQEYAAKDPRIRLIDNPKR----I-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred ccEEEEEeCCCCc-cHHHHHHHHHhcCCeEEEEeCCCC----C-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHHHHH
Confidence 4555555444443 334444544444444544432211 1 11 234555555589999999999999987777777
Q ss_pred hc--CCCCCeeEEeeeCC-CCCccC-----CCCCcccCCCCC--CCCCCCCCcCCCccccCHHHHHHHHhhhcccccCCC
Q 006036 528 KE--KPSNGLLFGLMSYD-SSPQRD-----KDSKWYISNEEW--PHSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLF 597 (663)
Q Consensus 528 ~~--~~~~~ly~G~v~~~-~~P~Rd-----~~~KwyVs~eey--p~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f 597 (663)
.. .+......|..... ..+... ....+......+ .....-.++.|++.++++++.+++.-. . . ...
T Consensus 104 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~-~--~~~ 179 (249)
T cd02525 104 EALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGF-D-E--SLV 179 (249)
T ss_pred HHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCC-C-c--ccC
Confidence 55 33333444543221 111100 000000000000 000001145788889999998877431 1 1 233
Q ss_pred CcchhHHHHHHHHhhcCCCeeee
Q 006036 598 KLEDVAMGIWIEQFKNTGQEVHY 620 (663)
Q Consensus 598 ~lEDV~iGi~L~~l~~~gi~v~~ 620 (663)
..||..++.-+.+. |..+.+
T Consensus 180 ~~eD~~l~~r~~~~---G~~~~~ 199 (249)
T cd02525 180 RNEDAELNYRLRKA---GYKIWL 199 (249)
T ss_pred ccchhHHHHHHHHc---CcEEEE
Confidence 46999988766654 445543
No 30
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=87.35 E-value=14 Score=36.47 Aligned_cols=156 Identities=17% Similarity=0.142 Sum_probs=79.3
Q ss_pred eEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhh
Q 006036 449 LAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLK 528 (663)
Q Consensus 449 V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~ 528 (663)
..++++...+.++ ....| ++...+..+....- + + ..|.-+ +..+....+.+|++.+|+|+.+..+.|.+.+.
T Consensus 29 ~eiivvdd~s~d~-~~~~l-~~~~~~~~~~v~~~-~---~-~g~~~a-~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~ 100 (235)
T cd06434 29 LEIIVVTDGDDEP-YLSIL-SQTVKYGGIFVITV-P---H-PGKRRA-LAEGIRHVTTDIVVLLDSDTVWPPNALPEMLK 100 (235)
T ss_pred CEEEEEeCCCChH-HHHHH-HhhccCCcEEEEec-C---C-CChHHH-HHHHHHHhCCCEEEEECCCceeChhHHHHHHH
Confidence 4454454444333 33333 34555666655541 1 1 224332 23344445899999999999999999888776
Q ss_pred c-C-CCCCeeEEeeeCCCCCccCCCCCc------ccCC-------CCCCCCCCCCCcCCCccccCHHHHHHHHhhhc---
Q 006036 529 E-K-PSNGLLFGLMSYDSSPQRDKDSKW------YISN-------EEWPHSSYPPWAHGPGYIISRDIAKFIVQGHQ--- 590 (663)
Q Consensus 529 ~-~-~~~~ly~G~v~~~~~P~Rd~~~Kw------yVs~-------eeyp~~~YPpYc~G~GYVLSrdla~~I~~~~~--- 590 (663)
. . +.-....|...... ...+.| +... ...... --+++.|++.++.+++++.+.-...
T Consensus 101 ~~~~~~v~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~rr~~l~~~~~~~~~~~ 175 (235)
T cd06434 101 PFEDPKVGGVGTNQRILR----PRDSKWSFLAAEYLERRNEEIRAAMSYDG-GVPCLSGRTAAYRTEILKDFLFLEEFTN 175 (235)
T ss_pred hccCCCEeEEcCceEeec----CcccHHHHHHHHHHHHHHHHHHHHHhhCC-CEEEccCcHHHHHHHHHhhhhhHHHhhh
Confidence 6 3 22223333322111 001111 0000 000001 1134578888899998887643210
Q ss_pred --ccccCCCCcchhHHHHHHHHhhcCCCeeee
Q 006036 591 --ERDLKLFKLEDVAMGIWIEQFKNTGQEVHY 620 (663)
Q Consensus 591 --~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~ 620 (663)
-...+...-||..++.-+.+. |..+.|
T Consensus 176 ~~~~~~~~~~~eD~~l~~~~~~~---g~~~~~ 204 (235)
T cd06434 176 ETFMGRRLNAGDDRFLTRYVLSH---GYKTVY 204 (235)
T ss_pred hhhcCCCCCcCchHHHHHHHHHC---CCeEEE
Confidence 001133467999998877654 444544
No 31
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=86.75 E-value=32 Score=36.08 Aligned_cols=113 Identities=14% Similarity=0.150 Sum_probs=60.8
Q ss_pred HHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCC------CCccC---------CCCCcccCCC
Q 006036 497 CIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDS------SPQRD---------KDSKWYISNE 559 (663)
Q Consensus 497 l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~------~P~Rd---------~~~KwyVs~e 559 (663)
...+......+|++..|+|+.+..+-|..++.. ........|.+.... ..... -...|.....
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 445555557899999999999987776666654 222223333221100 00000 0001111000
Q ss_pred -----CCC-CCCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHh
Q 006036 560 -----EWP-HSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQF 611 (663)
Q Consensus 560 -----eyp-~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l 611 (663)
..+ ....-+++.|++.++++++...+-- + ...+.....||+-+..-+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGg-f-De~~~~~~~ED~Dl~~R~~~~ 210 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGG-Y-DEGMDIWGGENLELSFKVWQC 210 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCC-C-CCcccccCchhHHHHHHHHHc
Confidence 001 1223467789999999999998853 2 123333347999876655544
No 32
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=86.65 E-value=25 Score=38.49 Aligned_cols=194 Identities=13% Similarity=0.047 Sum_probs=108.9
Q ss_pred eEEEEEEecCCCcH-HHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHH
Q 006036 415 LVMLIGVFSTGNNF-ERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT 493 (663)
Q Consensus 415 v~LlI~V~Sa~~n~-~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKt 493 (663)
+.+-|+|++--... --.+.++..=.+. -....+..+...+ .++..+.+++-.+++++.+.+... -.....|
T Consensus 54 p~vsviiP~ynE~~~~~~~~l~s~~~~d----yp~~evivv~d~~-~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~gK- 125 (439)
T COG1215 54 PKVSVIIPAYNEEPEVLEETLESLLSQD----YPRYEVIVVDDGS-TDETYEILEELGAEYGPNFRVIYP--EKKNGGK- 125 (439)
T ss_pred CceEEEEecCCCchhhHHHHHHHHHhCC----CCCceEEEECCCC-ChhHHHHHHHHHhhcCcceEEEec--cccCccc-
Confidence 66777888766554 3344444443331 1224554454433 344455566666677644444411 0121222
Q ss_pred HHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCCCCc-cCCCCCc----ccCC----CCCC
Q 006036 494 IAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQ-RDKDSKW----YISN----EEWP 562 (663)
Q Consensus 494 la~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~~P~-Rd~~~Kw----yVs~----eeyp 562 (663)
...+.++.+..+.++++..|.|+.+..+.|.+.+.. .+....+.|.......+. .+..++- |... ..+.
T Consensus 126 ~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (439)
T COG1215 126 AGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAA 205 (439)
T ss_pred hHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhh
Confidence 234566666667999999999999999999999887 222222444332111110 0000010 0000 0001
Q ss_pred -CCCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeeeccCC
Q 006036 563 -HSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHYMSDD 624 (663)
Q Consensus 563 -~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~~~ 624 (663)
......+|.|++.++-+++++.+-. .....--||..+++.+... |..+.|..+.
T Consensus 206 ~~~g~~~~~~G~~~~~rr~aL~~~g~-----~~~~~i~ED~~lt~~l~~~---G~~~~~~~~~ 260 (439)
T COG1215 206 SKGGLISFLSGSSSAFRRSALEEVGG-----WLEDTITEDADLTLRLHLR---GYRVVYVPEA 260 (439)
T ss_pred hhcCCeEEEcceeeeEEHHHHHHhCC-----CCCCceeccHHHHHHHHHC---CCeEEEeecc
Confidence 1125788999999999999999873 2234456999999999843 5667666544
No 33
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=86.33 E-value=20 Score=40.28 Aligned_cols=183 Identities=13% Similarity=0.090 Sum_probs=98.2
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHHH
Q 006036 415 LVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTI 494 (663)
Q Consensus 415 v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtl 494 (663)
+.+-|+|++.-+...-++.|+.- .+. ...+..+ +++..+.++...+.+++..+++..+....... |. .|.
T Consensus 75 p~vsViIP~yNE~~~i~~~l~sl-l~q---~yp~~eI-ivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~---n~-Gka- 144 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHAA-LAQ---TYTNIEV-IAINDGSSDDTAQVLDALLAEDPRLRVIHLAH---NQ-GKA- 144 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHHH-HcC---CCCCeEE-EEEECCCCccHHHHHHHHHHhCCCEEEEEeCC---CC-CHH-
Confidence 45667777665443334444332 121 1124554 44433333444455555566777665554322 22 243
Q ss_pred HHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeeEEeeeCCCCCccCCC---CCcccCCCCCCC-----
Q 006036 495 AICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSYDSSPQRDKD---SKWYISNEEWPH----- 563 (663)
Q Consensus 495 a~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~---~~~~~ly~G~v~~~~~P~Rd~~---~KwyVs~eeyp~----- 563 (663)
..++.+....+.+|++..|+|+.+..+.|...+.. ++.-..+.|.... ++.. ++... .+|..
T Consensus 145 ~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~-----~~~~~~~~~~~~--~e~~~~~~~~ 217 (444)
T PRK14583 145 IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRI-----RTRSTLIGRVQV--GEFSSIIGLI 217 (444)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEcccee-----cCCCcchhhHHH--HHHHHHHHHH
Confidence 23455655668999999999999999988887765 3333333343211 1111 11100 01100
Q ss_pred ----CCC--CCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeeecc
Q 006036 564 ----SSY--PPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHYMS 622 (663)
Q Consensus 564 ----~~Y--PpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~ 622 (663)
..| +..++|.+.++.+++++++--. -...-.||..+|.-+... |..+.|..
T Consensus 218 ~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~-----~~~~i~ED~dl~~rl~~~---G~~i~~~p 274 (444)
T PRK14583 218 KRTQRVYGQVFTVSGVVAAFRRRALADVGYW-----SPDMITEDIDISWKLQLK---HWSVFFEP 274 (444)
T ss_pred HHHHHHhCCceEecCceeEEEHHHHHHcCCC-----CCCcccccHHHHHHHHHc---CCeEEEee
Confidence 011 2235788899999998887421 112346999999998865 44555544
No 34
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=84.97 E-value=37 Score=32.52 Aligned_cols=158 Identities=11% Similarity=0.095 Sum_probs=78.0
Q ss_pred CeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHh
Q 006036 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNL 527 (663)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L 527 (663)
.+.++.+-..+.+..+...+......+..+..... +.-... -..+..+......+|++..|+|..+..+.|...+
T Consensus 31 ~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~~-~~~~g~----~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 31 NWELCIADDASTDPEVKRVLKKYAAQDPRIKVVFR-EENGGI----SAATNSALELATGEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEEc-ccCCCH----HHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHH
Confidence 35555554555454443334433444444433322 211111 1233445455678999999999999988777776
Q ss_pred hc---CCCCCeeEEeeeCCCCCccCCCCCcccCC--CCCCCCC-CCCCcCCCccccCHHHHHHHHhhhcccccCCCCcch
Q 006036 528 KE---KPSNGLLFGLMSYDSSPQRDKDSKWYISN--EEWPHSS-YPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLED 601 (663)
Q Consensus 528 ~~---~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~--eeyp~~~-YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lED 601 (663)
.. .+.-.+++|...... ..+..+-+. ..|.... +..-+.|++-++++++++.+-- +.. .+...||
T Consensus 106 ~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~igg-f~~---~~~~~eD 176 (202)
T cd04184 106 KALNEHPDADLIYSDEDKID-----EGGKRSEPFFKPDWSPDLLLSQNYIGHLLVYRRSLVRQVGG-FRE---GFEGAQD 176 (202)
T ss_pred HHHHhCCCCCEEEccHHhcc-----CCCCEeccccCCCCCHHHhhhcCCccceEeEEHHHHHHhCC-CCc---Ccccchh
Confidence 55 344456655432211 001111000 0111111 1111234555788888877643 111 2335799
Q ss_pred hHHHHHHHHhhcCCCeeeecc
Q 006036 602 VAMGIWIEQFKNTGQEVHYMS 622 (663)
Q Consensus 602 V~iGi~L~~l~~~gi~v~~~~ 622 (663)
..+++-+.+. |..+.+..
T Consensus 177 ~~l~~rl~~~---g~~~~~~~ 194 (202)
T cd04184 177 YDLVLRVSEH---TDRIAHIP 194 (202)
T ss_pred HHHHHHHHhc---cceEEEcc
Confidence 9887766554 44554433
No 35
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=84.85 E-value=1.2 Score=43.97 Aligned_cols=104 Identities=21% Similarity=0.227 Sum_probs=65.8
Q ss_pred CCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCCCCccCCCC---CcccC--CCCCCCCCCCCCcCCCccc
Q 006036 504 LPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQRDKDS---KWYIS--NEEWPHSSYPPWAHGPGYI 576 (663)
Q Consensus 504 ~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~~P~Rd~~~---KwyVs--~eeyp~~~YPpYc~G~GYV 576 (663)
.+.++++..|+|+.|+.+.|...+.. ++.-.+..|... ..|.+.-.+ .-++. ...+..-.-.++|.|+.++
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~G~~m~ 107 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPR--GVPARGFWSRLEAAFFNFLPGVLQALGGAPFAWGGSMA 107 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEeccc--ccCCcCHHHHHHHHHHhHHHHHHHHhcCCCceecceee
Confidence 68899999999999999999988877 445555544222 112221000 01110 0000001246889999999
Q ss_pred cCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhh
Q 006036 577 ISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFK 612 (663)
Q Consensus 577 LSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~ 612 (663)
+.+++++.+-- + ..+...--||.++|..+.+.+
T Consensus 108 ~rr~~L~~~GG-~--~~l~~~ladD~~l~~~~~~~G 140 (175)
T PF13506_consen 108 FRREALEEIGG-F--EALADYLADDYALGRRLRARG 140 (175)
T ss_pred eEHHHHHHccc-H--HHHhhhhhHHHHHHHHHHHCC
Confidence 99999998732 1 123345689999999999864
No 36
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=84.70 E-value=11 Score=36.56 Aligned_cols=87 Identities=20% Similarity=0.141 Sum_probs=54.3
Q ss_pred HHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc-C-CCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCCCCcCCCc
Q 006036 497 CIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE-K-PSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYPPWAHGPG 574 (663)
Q Consensus 497 l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~-~-~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YPpYc~G~G 574 (663)
+.++. ..+.+|++..|||..+..+.|...+.. . +.-..+.|..... + + .++|
T Consensus 72 ~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-----~--~------------------~~~~ 125 (202)
T cd04185 72 VRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDP-----D--G------------------SFVG 125 (202)
T ss_pred HHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcC-----C--C------------------ceEE
Confidence 44444 457899999999999998777666655 3 3333444433221 0 1 3456
Q ss_pred cccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhh
Q 006036 575 YIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFK 612 (663)
Q Consensus 575 YVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~ 612 (663)
.++.+++.+.+--. .... ....||+.++.-+.+.+
T Consensus 126 ~~~~~~~~~~~g~~--~~~~-~~~~eD~~~~~r~~~~G 160 (202)
T cd04185 126 VLISRRVVEKIGLP--DKEF-FIWGDDTEYTLRASKAG 160 (202)
T ss_pred EEEeHHHHHHhCCC--Chhh-hccchHHHHHHHHHHcC
Confidence 78999998877321 1111 23469999988877653
No 37
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=84.16 E-value=6.2 Score=36.68 Aligned_cols=109 Identities=20% Similarity=0.208 Sum_probs=62.9
Q ss_pred EEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHH-----
Q 006036 419 IGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT----- 493 (663)
Q Consensus 419 I~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKt----- 493 (663)
|.|.+-+...+||..+++..... .+...||-|..........+...... .........++.--
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~------~~~~~~~~Avd~~~~~~~~~~~~~~~------~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAAL------GLDFEFFDAVDGKDLSEEELAALYDA------LFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc------CCCeEEEeccccccCCHHHHHHHhHH------HhhhhcCCCCChhhHHHHH
Confidence 45677788899999999865543 34566776654432222222211110 00000011122111
Q ss_pred --HHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhcCCCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCCCCcC
Q 006036 494 --IAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKEKPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYPPWAH 571 (663)
Q Consensus 494 --la~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YPpYc~ 571 (663)
+..++-... .+.++.+-..||+.+..+ +
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------~ 99 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------G 99 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC-------------------------------------------------C
Confidence 111111111 367899999999999887 5
Q ss_pred CCccccCHHHHHHHHhhh
Q 006036 572 GPGYIISRDIAKFIVQGH 589 (663)
Q Consensus 572 G~GYVLSrdla~~I~~~~ 589 (663)
..||++|+..|++++...
T Consensus 100 ~~~Y~vs~~~A~~ll~~~ 117 (128)
T cd06532 100 TAGYLVSRKGAKKLLAAL 117 (128)
T ss_pred ceEEEeCHHHHHHHHHhC
Confidence 668999999999999974
No 38
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=81.45 E-value=5.5 Score=38.52 Aligned_cols=108 Identities=15% Similarity=0.186 Sum_probs=64.8
Q ss_pred EEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCCCCccCCCCCcccCCCC------C---CCCCCCCCcCCCccc
Q 006036 508 YIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQRDKDSKWYISNEE------W---PHSSYPPWAHGPGYI 576 (663)
Q Consensus 508 yvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~ee------y---p~~~YPpYc~G~GYV 576 (663)
||+-+|+|+-+..+.|.+.+.. ++.-...-|.+... +..+.-.++...... . ..-..+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR--NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec--CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 6899999999999888887766 33333444444321 111111111111100 0 112347778999999
Q ss_pred cCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeeeccCC
Q 006036 577 ISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHYMSDD 624 (663)
Q Consensus 577 LSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~~~ 624 (663)
+.+++++++.-- . -.....||..++.-+.+. |..+.+..+.
T Consensus 79 ~r~~~l~~vg~~---~-~~~~~~ED~~l~~~l~~~---G~~~~~~~~~ 119 (193)
T PF13632_consen 79 FRREALREVGGF---D-DPFSIGEDMDLGFRLRRA---GYRIVYVPDA 119 (193)
T ss_pred eeHHHHHHhCcc---c-ccccccchHHHHHHHHHC---CCEEEEeccc
Confidence 999999988532 1 234556999999888755 4556555543
No 39
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=81.10 E-value=11 Score=36.30 Aligned_cols=157 Identities=13% Similarity=0.074 Sum_probs=77.4
Q ss_pred eEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhh
Q 006036 449 LAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLK 528 (663)
Q Consensus 449 V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~ 528 (663)
..++++.-.+.+..+...+++-.+.+. +..+....+ . .+. ..+..+....+.+|++..|+|.++..+.|...+.
T Consensus 30 ~eiiivdd~ss~d~t~~~~~~~~~~~~-i~~i~~~~n---~-G~~-~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~ 103 (201)
T cd04195 30 DEVVLVKDGPVTQSLNEVLEEFKRKLP-LKVVPLEKN---R-GLG-KALNEGLKHCTYDWVARMDTDDISLPDRFEKQLD 103 (201)
T ss_pred cEEEEEECCCCchhHHHHHHHHHhcCC-eEEEEcCcc---c-cHH-HHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHH
Confidence 344333332324444444444455555 544433222 1 111 1234555555889999999999999888877776
Q ss_pred c---CCCCCeeEEeeeCCCCCccCCCCCcccCCC-----CCCCCCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcc
Q 006036 529 E---KPSNGLLFGLMSYDSSPQRDKDSKWYISNE-----EWPHSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLE 600 (663)
Q Consensus 529 ~---~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~e-----eyp~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lE 600 (663)
. ++.-.++.|.+.......+....+. .+.. .+.... -+ ..|++.++.+.+.+.+--- -.....|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~-~~~~~~~~rr~~~~~~g~~-----~~~~~~e 175 (201)
T cd04195 104 FIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LPTSHDDILKFARRR-SP-FNHPTVMFRKSKVLAVGGY-----QDLPLVE 175 (201)
T ss_pred HHHhCCCeEEEcccEEEECCCCCeecccc-CCCCHHHHHHHhccC-CC-CCChHHhhhHHHHHHcCCc-----CCCCCch
Confidence 5 3444455554432110000000000 0000 000000 11 2466778888777665321 1225689
Q ss_pred hhHHHHHHHHhhcCCCeeeecc
Q 006036 601 DVAMGIWIEQFKNTGQEVHYMS 622 (663)
Q Consensus 601 DV~iGi~L~~l~~~gi~v~~~~ 622 (663)
|..+...+... |..+.+..
T Consensus 176 D~~~~~r~~~~---g~~~~~~~ 194 (201)
T cd04195 176 DYALWARMLAN---GARFANLP 194 (201)
T ss_pred HHHHHHHHHHc---CCceeccc
Confidence 99988887654 34454443
No 40
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=80.99 E-value=25 Score=33.06 Aligned_cols=96 Identities=9% Similarity=-0.010 Sum_probs=57.7
Q ss_pred HHhhhccCCCcEEEEeCCceeeeHHHHHHHhhcCCCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCCCCcCCCccc
Q 006036 497 CIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKEKPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYPPWAHGPGYI 576 (663)
Q Consensus 497 l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YPpYc~G~GYV 576 (663)
+..+.+....+|++..|+|..+..+.|...++.......++|.......... .....|+++.
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~------------------~~~~~~~~~~ 132 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEPGVFLSGSRVLLNEKLT------------------ERGIRGCNMS 132 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCCCcEEecceeecccccc------------------eeEeccceEE
Confidence 3445555688999999999999887777766553223344443322111100 0345678888
Q ss_pred cCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhh
Q 006036 577 ISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFK 612 (663)
Q Consensus 577 LSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~ 612 (663)
+.+..+..+.- +. ........||+.++.-+.+.+
T Consensus 133 ~~r~~~~~~gg-f~-~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 133 FWKKDLLAVNG-FD-EEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred EEHHHHHHhCC-CC-cccccCCcchHHHHHHHHHcC
Confidence 88888775433 21 122223479998888777653
No 41
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=80.51 E-value=83 Score=33.34 Aligned_cols=134 Identities=13% Similarity=0.109 Sum_probs=73.7
Q ss_pred cCCEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCC--C--Cc
Q 006036 474 YGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDS--S--PQ 547 (663)
Q Consensus 474 ygDII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~--~--P~ 547 (663)
+.++..+...+++---.. .-.+..++..- ..+|++-.++|+.+..+.|.++++. ......+.|...... . +.
T Consensus 55 ~~~v~~i~~~~NlG~agg-~n~g~~~a~~~-~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLGFAGG-FNRGIKYALAK-GDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCccchhh-hhHHHHHHhcC-CCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 678877665554321000 00122333221 1229999999999999999888877 333334444333211 0 11
Q ss_pred cCC------CCCc-ccCCCCCCC-----CCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhh
Q 006036 548 RDK------DSKW-YISNEEWPH-----SSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFK 612 (663)
Q Consensus 548 Rd~------~~Kw-yVs~eeyp~-----~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~ 612 (663)
+.. ...| +....+.+. ...-.++.|++.++++++.+++-- +. .--....||+-++.=+++.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~-~d--e~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGG-FD--ERFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCC-CC--cccceeehHHHHHHHHHHcC
Confidence 110 1122 222222222 112225799999999999999976 21 22244799999988888764
No 42
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=80.00 E-value=45 Score=37.53 Aligned_cols=184 Identities=11% Similarity=0.005 Sum_probs=90.9
Q ss_pred eEEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHHH
Q 006036 415 LVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTI 494 (663)
Q Consensus 415 v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtl 494 (663)
+.+-|+|++--....-++.|+.--.+. .....+.+ .++.....++..+.+++-.+.+..+...- .+. + ..|.-
T Consensus 49 P~vsVIIP~yNe~~~l~~~l~sl~~q~--yp~~~~eI-iVVDd~StD~T~~il~~~~~~~~~v~v~~-~~~--~-~Gka~ 121 (439)
T TIGR03111 49 PDITIIIPVYNSEDTLFNCIESIYNQT--YPIELIDI-ILANNQSTDDSFQVFCRAQNEFPGLSLRY-MNS--D-QGKAK 121 (439)
T ss_pred CCEEEEEEeCCChHHHHHHHHHHHhcC--CCCCCeEE-EEEECCCChhHHHHHHHHHHhCCCeEEEE-eCC--C-CCHHH
Confidence 445556665443333444555433331 11223444 34433333333333333344555543322 221 1 23433
Q ss_pred HHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeeEEeeeCCCCCccCCCC--CcccCCC---CCC----
Q 006036 495 AICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSYDSSPQRDKDS--KWYISNE---EWP---- 562 (663)
Q Consensus 495 a~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~---~~~~~ly~G~v~~~~~P~Rd~~~--KwyVs~e---eyp---- 562 (663)
.+.++.+..+.+|++..|+|..+..+.|.+.+.. ++.-....|.+.......-...+ .+++... +|.
T Consensus 122 -AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 122 -ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred -HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 3456666668899999999999999988887765 33333444555432111000000 1111110 110
Q ss_pred -------CCCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHh
Q 006036 563 -------HSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQF 611 (663)
Q Consensus 563 -------~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l 611 (663)
....+..++|++.++.++++.++--- . ...-.||..++.-+...
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf-~----~~~i~ED~~l~~rl~~~ 251 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLY-N----SETVGEDTDMTFQIREL 251 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCC-C----CCCcCccHHHHHHHHHh
Confidence 00122346788999999998775321 1 11238999998776543
No 43
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=79.15 E-value=69 Score=35.30 Aligned_cols=189 Identities=15% Similarity=0.051 Sum_probs=92.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcC---CEEEEeecccCCcch
Q 006036 414 RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYG---DIQIMPFVDYYSLIS 490 (663)
Q Consensus 414 ~v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~yg---DII~ldf~DsY~nLt 490 (663)
.+.+-|+|++.-....-.+.|+.--.+. . .....++++-..+.+.. .+.+++-.+.|. .+..+...+.-.+-.
T Consensus 39 ~p~VSVIIpa~Ne~~~L~~~L~sL~~q~-y--p~~~eIIVVDd~StD~T-~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~ 114 (384)
T TIGR03469 39 WPAVVAVVPARNEADVIGECVTSLLEQD-Y--PGKLHVILVDDHSTDGT-ADIARAAARAYGRGDRLTVVSGQPLPPGWS 114 (384)
T ss_pred CCCEEEEEecCCcHhHHHHHHHHHHhCC-C--CCceEEEEEeCCCCCcH-HHHHHHHHHhcCCCCcEEEecCCCCCCCCc
Confidence 3456566665443333334444332221 1 11356665555555433 222222223343 455544322222333
Q ss_pred HHHHH---HHHhhh-ccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCCCCccCCCCCcccC------C
Q 006036 491 LKTIA---ICIFGT-KILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQRDKDSKWYIS------N 558 (663)
Q Consensus 491 lKtla---~l~w~~-~~~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~~P~Rd~~~KwyVs------~ 558 (663)
.|..+ +++.+. ..++.+|++.+|+|+.+..+.|.+.+.. .....+..|...... .....+..++ .
T Consensus 115 Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~---~~~~~~~~~~~~~~~~~ 191 (384)
T TIGR03469 115 GKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRC---ESFWEKLLIPAFVFFFQ 191 (384)
T ss_pred chHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccC---CCHHHHHHHHHHHHHHH
Confidence 45433 233332 2334899999999999999888887766 222233333221100 0000000000 0
Q ss_pred CCCCC------CCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhh
Q 006036 559 EEWPH------SSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFK 612 (663)
Q Consensus 559 eeyp~------~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~ 612 (663)
..||. .....++.|++.++++++.+++--. . .......||+.++.-+.+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf-~--~~~~~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 192 KLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGI-A--AIRGALIDDCTLAAAVKRSG 248 (384)
T ss_pred HhcchhhhcCCCccceeecceEEEEEHHHHHHcCCH-H--HHhhCcccHHHHHHHHHHcC
Confidence 00110 1123456899999999999888332 1 11223589999998888753
No 44
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=76.94 E-value=9.5 Score=36.29 Aligned_cols=134 Identities=12% Similarity=0.107 Sum_probs=70.5
Q ss_pred CeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHh
Q 006036 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNL 527 (663)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L 527 (663)
.+.++.+-..+.+. ....++...+++..+..+.....+. |. ..+..+......+|++.+|+|.....+.|...+
T Consensus 29 ~~eiivvdd~s~d~-t~~~~~~~~~~~~~i~~i~~~~n~G----~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDR-TLEILRELAARDPRVKVIRLSRNFG----QQ-AALLAGLDHARGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCcc-HHHHHHHHHhhCCCEEEEEecCCCC----cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 34555554444433 2333444455566666555433221 22 223344444567999999999999887777766
Q ss_pred hc-CCCCCeeEEeeeCCCCCc-cCCCCCcccCCCCCCCCCCCCCcCCCccccCHHHHHHHHh
Q 006036 528 KE-KPSNGLLFGLMSYDSSPQ-RDKDSKWYISNEEWPHSSYPPWAHGPGYIISRDIAKFIVQ 587 (663)
Q Consensus 528 ~~-~~~~~ly~G~v~~~~~P~-Rd~~~KwyVs~eeyp~~~YPpYc~G~GYVLSrdla~~I~~ 587 (663)
.. .......+|.......+. +.-.++.+...........-+...|+.+++++++++.+..
T Consensus 103 ~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 103 AKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 65 444567777654321110 0000000000000001122345678889999999999875
No 45
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=76.42 E-value=53 Score=33.23 Aligned_cols=133 Identities=14% Similarity=0.098 Sum_probs=68.3
Q ss_pred CeEEEEEEeccCChhhhHHHHHHHhhcCC--EEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHH
Q 006036 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGD--IQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLS 525 (663)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Ea~~ygD--II~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~ 525 (663)
.+.++++-..+.+. ..+.+++-.++|++ +....... |.- |. ..+..+....+.+|++..|+|..+.++.|.+
T Consensus 40 ~~eiivvDdgS~D~-t~~i~~~~~~~~~~~~v~~~~~~~---n~G-~~-~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~ 113 (243)
T PLN02726 40 DFEIIVVDDGSPDG-TQDVVKQLQKVYGEDRILLRPRPG---KLG-LG-TAYIHGLKHASGDFVVIMDADLSHHPKYLPS 113 (243)
T ss_pred CeEEEEEeCCCCCC-HHHHHHHHHHhcCCCcEEEEecCC---CCC-HH-HHHHHHHHHcCCCEEEEEcCCCCCCHHHHHH
Confidence 45666665555443 23334443445553 33322211 211 11 2333444445789999999999999988888
Q ss_pred Hhhc--CCCCCeeEEeeeCCCC--C----ccCCCCC--cccCCCCCCCCCCCCCcCCCccccCHHHHHHHHhh
Q 006036 526 NLKE--KPSNGLLFGLMSYDSS--P----QRDKDSK--WYISNEEWPHSSYPPWAHGPGYIISRDIAKFIVQG 588 (663)
Q Consensus 526 ~L~~--~~~~~ly~G~v~~~~~--P----~Rd~~~K--wyVs~eeyp~~~YPpYc~G~GYVLSrdla~~I~~~ 588 (663)
.+.. .....+++|....... . .|.-.++ .++...... . .-+.+.|+..++++++++.+...
T Consensus 114 l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~-~~~d~~g~~~~~rr~~~~~i~~~ 184 (243)
T PLN02726 114 FIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLW-P-GVSDLTGSFRLYKRSALEDLVSS 184 (243)
T ss_pred HHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhC-C-CCCcCCCcccceeHHHHHHHHhh
Confidence 7766 3345677775432110 0 0100000 000000111 1 11235788889999999999753
No 46
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=75.90 E-value=74 Score=31.37 Aligned_cols=105 Identities=18% Similarity=0.118 Sum_probs=55.4
Q ss_pred CCcEEEEeCCceeeeHHHHHHHh--hc--C-CCCCeeEEeeeCC-CCCccC---CCCCcccCCCCCCCCC--CCCCcCCC
Q 006036 505 PAKYIMKTDDDAFVRIDEVLSNL--KE--K-PSNGLLFGLMSYD-SSPQRD---KDSKWYISNEEWPHSS--YPPWAHGP 573 (663)
Q Consensus 505 ~akyvlKvDDDtfVnvd~Ll~~L--~~--~-~~~~ly~G~v~~~-~~P~Rd---~~~KwyVs~eeyp~~~--YPpYc~G~ 573 (663)
+++|++..|+|+.+..+.|...+ .. . ...-..+|..... ...... ....|........... -..++.|+
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITS 154 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceecccccCCceEeeeeecc
Confidence 67999999999999988888875 22 1 1222333332211 110000 0001111000010111 12455678
Q ss_pred ccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhh
Q 006036 574 GYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFK 612 (663)
Q Consensus 574 GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~ 612 (663)
|.++.+++.+.+--- . ... ....||+.+++-+.+.+
T Consensus 155 ~~~~rr~~~~~~ggf-d-~~~-~~~~eD~d~~~r~~~~G 190 (237)
T cd02526 155 GSLISLEALEKVGGF-D-EDL-FIDYVDTEWCLRARSKG 190 (237)
T ss_pred ceEEcHHHHHHhCCC-C-HHH-cCccchHHHHHHHHHcC
Confidence 889999998887432 1 111 23468999888877654
No 47
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=75.88 E-value=3.3 Score=43.56 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=32.4
Q ss_pred CCCccccCHHHHHHHHhhhcccc--cCCCCcchhHHHHHHHHhh
Q 006036 571 HGPGYIISRDIAKFIVQGHQERD--LKLFKLEDVAMGIWIEQFK 612 (663)
Q Consensus 571 ~G~GYVLSrdla~~I~~~~~~~~--l~~f~lEDV~iGi~L~~l~ 612 (663)
+|+|++||..+|+.|.+....+. .+.+.--|-.+..|+.+++
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lg 55 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELG 55 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhC
Confidence 89999999999999998754332 2333446888999998874
No 48
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=73.46 E-value=8.3 Score=36.44 Aligned_cols=119 Identities=10% Similarity=0.035 Sum_probs=63.8
Q ss_pred hhhHHHHHHHhhcCCEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEe
Q 006036 462 QVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGL 539 (663)
Q Consensus 462 ~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~ 539 (663)
.....++.-..++..+..+....... | -..+..+......+|++..|+|..+..+.|.+++.. ......++|.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 41 GTAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred ChHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 33444555555666665555444332 1 122334444455699999999999998888888875 4445677776
Q ss_pred eeCCCC----C-ccCCCCCcccCCCCCC-CCCCCCCcCCCccccCHHHHHHHH
Q 006036 540 MSYDSS----P-QRDKDSKWYISNEEWP-HSSYPPWAHGPGYIISRDIAKFIV 586 (663)
Q Consensus 540 v~~~~~----P-~Rd~~~KwyVs~eeyp-~~~YPpYc~G~GYVLSrdla~~I~ 586 (663)
...... + .+. ...+........ ...-.....|+.+++.+++++.+.
T Consensus 116 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 116 RFVRGGGAGMPLLRR-LGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred eecCCCcccchHHHH-HHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 543221 0 000 000000000000 011123346777899999999985
No 49
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=73.39 E-value=42 Score=33.81 Aligned_cols=116 Identities=11% Similarity=0.150 Sum_probs=64.3
Q ss_pred HHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc-CCC-CC-eeE-EeeeCCCCCccCCCCCcccC-C-----CCCC---
Q 006036 496 ICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE-KPS-NG-LLF-GLMSYDSSPQRDKDSKWYIS-N-----EEWP--- 562 (663)
Q Consensus 496 ~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~-~~~-~~-ly~-G~v~~~~~P~Rd~~~KwyVs-~-----eeyp--- 562 (663)
.+.++....+.+||+.+|+|+.+..+.|.+.+.. ... .. .+. |.+.....+ .....+.+.. . ...+
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNAR-ENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCC-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555567899999999999999999888876 211 22 222 222211110 0000010000 0 0001
Q ss_pred CCCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeee
Q 006036 563 HSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHY 620 (663)
Q Consensus 563 ~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~ 620 (663)
....+..++|++.++++++.+.+--. . .....||..+++-+.+. |..+.+
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~-~----~~~~~eD~~l~~rl~~~---G~r~~~ 203 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGW-D----PFNVTEDADLGLRLARA---GYRTGV 203 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCC-C----cccchhhHHHHHHHHHC---CceEEE
Confidence 11233456899999999999887542 1 12346999998877654 444544
No 50
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=65.32 E-value=98 Score=35.95 Aligned_cols=194 Identities=12% Similarity=0.046 Sum_probs=96.2
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHH
Q 006036 414 RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT 493 (663)
Q Consensus 414 ~v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKt 493 (663)
...+-|+|+.--+..--.+.|+..=.+.. ..+..+ ||+....++.+...+++=+++|..+..+-. + ....+-|.
T Consensus 65 ~p~vaIlIPA~NE~~vI~~~l~s~L~~ld---Y~~~eI-iVv~d~ndd~T~~~v~~l~~~~p~v~~vv~-~-~~gp~~Ka 138 (504)
T PRK14716 65 EKRIAIFVPAWREADVIGRMLEHNLATLD---YENYRI-FVGTYPNDPATLREVDRLAARYPRVHLVIV-P-HDGPTSKA 138 (504)
T ss_pred CCceEEEEeccCchhHHHHHHHHHHHcCC---CCCeEE-EEEECCCChhHHHHHHHHHHHCCCeEEEEe-C-CCCCCCHH
Confidence 34455666644333223344443311111 123443 333334444444444433566777643332 2 12234565
Q ss_pred HHHHHhhhc-------c--CCCcEEEEeCCceeeeHHHHHHHhhcCCCCCeeEEeeeCCCCCccCCCCCc----ccCCCC
Q 006036 494 IAICIFGTK-------I--LPAKYIMKTDDDAFVRIDEVLSNLKEKPSNGLLFGLMSYDSSPQRDKDSKW----YISNEE 560 (663)
Q Consensus 494 la~l~w~~~-------~--~~akyvlKvDDDtfVnvd~Ll~~L~~~~~~~ly~G~v~~~~~P~Rd~~~Kw----yVs~ee 560 (663)
-+ +.++.. + .++++++..|-|..+..+.|.......+...++-..+.... + +.+.| |. .+
T Consensus 139 ~a-LN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~~~~~VQ~pv~~~~---~-~~~~~~ag~y~--~e 211 (504)
T PRK14716 139 DC-LNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLPRHDFVQLPVFSLP---R-DWGEWVAGTYM--DE 211 (504)
T ss_pred HH-HHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcCCCCEEecceeccC---C-chhHHHHHHHH--HH
Confidence 43 233321 1 24699999999999999998764322322222211111111 1 11111 11 11
Q ss_pred CCC---------CC--CCCCcCCCccccCHHHHHHHHhhhccccc-CCCCcchhHHHHHHHHhhcCCCeeeeccC
Q 006036 561 WPH---------SS--YPPWAHGPGYIISRDIAKFIVQGHQERDL-KLFKLEDVAMGIWIEQFKNTGQEVHYMSD 623 (663)
Q Consensus 561 yp~---------~~--YPpYc~G~GYVLSrdla~~I~~~~~~~~l-~~f~lEDV~iGi~L~~l~~~gi~v~~~~~ 623 (663)
|.+ +. -+..+.|.|+++++++++++.....-... ...--||.-+|+-+... |..+.|.+.
T Consensus 212 f~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~---G~rv~y~p~ 283 (504)
T PRK14716 212 FAESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRA---GFRQIFVRV 283 (504)
T ss_pred HHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHC---CCEEEEecc
Confidence 211 00 23347899999999999998653100012 22457999999998865 566766554
No 51
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=64.31 E-value=97 Score=26.94 Aligned_cols=77 Identities=19% Similarity=0.140 Sum_probs=50.1
Q ss_pred hhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCCCCcCCCcc
Q 006036 499 FGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYPPWAHGPGY 575 (663)
Q Consensus 499 w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~---~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YPpYc~G~GY 575 (663)
++....+.+|++.+|+|..+..+.+...+.. .+...+..|. +++
T Consensus 71 ~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------------~~~ 117 (156)
T cd00761 71 AGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP---------------------------------GNL 117 (156)
T ss_pred HHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc---------------------------------chh
Confidence 3433448999999999999998888776433 2222233332 789
Q ss_pred ccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHh
Q 006036 576 IISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQF 611 (663)
Q Consensus 576 VLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l 611 (663)
++++++.+.+.-.. ......-||..++..+...
T Consensus 118 ~~~~~~~~~~~~~~---~~~~~~~ed~~~~~~~~~~ 150 (156)
T cd00761 118 LFRRELLEEIGGFD---EALLSGEEDDDFLLRLLRG 150 (156)
T ss_pred eeeHHHHHHhCCcc---hHhcCCcchHHHHHHHHhh
Confidence 99999998886531 1112226888777666654
No 52
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=61.84 E-value=83 Score=37.96 Aligned_cols=126 Identities=15% Similarity=0.076 Sum_probs=66.8
Q ss_pred cchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeeEEeee-CCCCCc-cCCCCCcccCCCC--
Q 006036 488 LISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMS-YDSSPQ-RDKDSKWYISNEE-- 560 (663)
Q Consensus 488 nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~---~~~~~ly~G~v~-~~~~P~-Rd~~~KwyVs~ee-- 560 (663)
|.-.|.-+ +..+.+..+.+|++..|.|+.+..+.|...+.. ++.-.++.+... .+..|. |+-.....++.+.
T Consensus 212 n~~~KAgn-LN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAGN-INNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChHH-HHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 43345432 345555567899999999999998888877655 222111111111 111111 1100000001000
Q ss_pred -C----CC-C-CCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeeecc
Q 006036 561 -W----PH-S-SYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHYMS 622 (663)
Q Consensus 561 -y----p~-~-~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~ 622 (663)
| +. + .-..++.|++.++.+++.+.+--- . ...-.||..+++-+.+. |..+.|..
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf-~----~~~vtED~~l~~rL~~~---G~~~~y~~ 351 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGI-A----GETVTEDAETALKLHRR---GWNSAYLD 351 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCC-C----CCCcCcHHHHHHHHHHc---CCeEEEec
Confidence 0 00 0 012467799999999999877421 1 12247999999988765 44555544
No 53
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=61.66 E-value=1.7e+02 Score=28.93 Aligned_cols=104 Identities=11% Similarity=0.011 Sum_probs=56.5
Q ss_pred HHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCCCCccCCCCCcccCCCC--------------
Q 006036 497 CIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQRDKDSKWYISNEE-------------- 560 (663)
Q Consensus 497 l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~ee-------------- 560 (663)
+..+....+.+|++.+|.|+.+..+.|...+.. ++.-..+.|.+.. .+....|......
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGH-----INANYSLLTRVQAMSLDYHFTIEQVAR 153 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceee-----EcCCCchhhHhhhhhHHhhhhHhHhhH
Confidence 345555568999999999999999888884443 2222233443321 1111111100000
Q ss_pred CCCCCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHh
Q 006036 561 WPHSSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQF 611 (663)
Q Consensus 561 yp~~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l 611 (663)
+....+ ..+.|++-++.+++.+.+-- +.. ....||+.++.-+...
T Consensus 154 ~~~~~~-~~~~g~~~~~rr~~~~~vgg-~~~----~~~~ED~~l~~rl~~~ 198 (232)
T cd06437 154 SSTGLF-FNFNGTAGVWRKECIEDAGG-WNH----DTLTEDLDLSYRAQLK 198 (232)
T ss_pred hhcCCe-EEeccchhhhhHHHHHHhCC-CCC----CcchhhHHHHHHHHHC
Confidence 011111 12356666788888877632 211 2347999998877654
No 54
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=58.56 E-value=71 Score=33.39 Aligned_cols=193 Identities=11% Similarity=0.076 Sum_probs=100.8
Q ss_pred EEEecCCCcHH-HHHHHHHHhcCCC-CCCCCCeEEEEEEeccCChhhhHHHHHH----HhhcCCEEEEeecccCCcchHH
Q 006036 419 IGVFSTGNNFE-RRMALRRSWMQYP-AVRSGDLAVRFFIGLHKNRQVNFELWKE----AQAYGDIQIMPFVDYYSLISLK 492 (663)
Q Consensus 419 I~V~Sa~~n~~-rR~aIR~TW~~~~-~v~~~~V~v~FvvG~~~~~~~~~~L~~E----a~~ygDII~ldf~DsY~nLtlK 492 (663)
|+|++.-.... -...++..+..-. .-....+.+ |++..+.+++.....+++ .+++..-+.+-+...-.|.-.|
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~K 81 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRK 81 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCcc
Confidence 66777666554 5666776664110 000124556 888777665433211111 1224433334444444455567
Q ss_pred HHHHHHhhhcc-CCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeeEEeeeCCCCCccCCCCCcc----------c--
Q 006036 493 TIAICIFGTKI-LPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSYDSSPQRDKDSKWY----------I-- 556 (663)
Q Consensus 493 tla~l~w~~~~-~~akyvlKvDDDtfVnvd~Ll~~L~~---~~~~~ly~G~v~~~~~P~Rd~~~Kwy----------V-- 556 (663)
+-.+-.+.... .+.+|++-.|.|+.+..+.|.+.+.. ++.-.++-+.... .+..+-|. .
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~-----~n~~~~~~~~~~~~~~~~~~~ 156 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKL-----IGAETLFARLQQFANRLYGPV 156 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCcee-----ECCCCHHHHHHHHHHHHHHHH
Confidence 65544443322 46799999999999999999998865 3322222221111 11111000 0
Q ss_pred ---CCCCCCCCCCCCCcCCCccccCHHHHHHHHhhhc---cccc-CCCCcchhHHHHHHHHhhcCCCeeeecc
Q 006036 557 ---SNEEWPHSSYPPWAHGPGYIISRDIAKFIVQGHQ---ERDL-KLFKLEDVAMGIWIEQFKNTGQEVHYMS 622 (663)
Q Consensus 557 ---s~eeyp~~~YPpYc~G~GYVLSrdla~~I~~~~~---~~~l-~~f~lEDV~iGi~L~~l~~~gi~v~~~~ 622 (663)
....|... -.+|.|...++.++++..+...-. .... ...-.||..+|+.+... |..+.|..
T Consensus 157 ~~~~~~~~~~~--~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~---G~ri~~~~ 224 (254)
T cd04191 157 FGRGLAAWQGG--EGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRA---GWEVRLAP 224 (254)
T ss_pred HHHHHHHhcCC--ccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHc---CCEEEEcc
Confidence 00011111 135679999999998877632100 0011 12357999999998865 44555543
No 55
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=56.88 E-value=82 Score=30.15 Aligned_cols=76 Identities=9% Similarity=0.112 Sum_probs=46.3
Q ss_pred CCCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeeEEeeeCCCCCccCCCCCcccCC--CCC-----------CCCCCCCC
Q 006036 504 LPAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWYISN--EEW-----------PHSSYPPW 569 (663)
Q Consensus 504 ~~akyvlKvDDDtfVnvd~Ll~~L~~-~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~--eey-----------p~~~YPpY 569 (663)
.+.+|++.+|.|+.+.++.|...+.. ......+.|.... +++...|.-.. ..| ..-.-+.+
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNS-----KNPDDSWITRLYAFAFLVFNRLRPLGRSNLGLSCQ 154 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEee-----eCCccCHHHHHHHHHHHHHHHHHHHHHHHcCCCee
Confidence 36899999999999998888777766 3333456665432 11112221000 000 00122446
Q ss_pred cCCCccccCHHHHHH
Q 006036 570 AHGPGYIISRDIAKF 584 (663)
Q Consensus 570 c~G~GYVLSrdla~~ 584 (663)
+.|+++++++++++.
T Consensus 155 ~~G~~~~~rr~~l~~ 169 (183)
T cd06438 155 LGGTGMCFPWAVLRQ 169 (183)
T ss_pred ecCchhhhHHHHHHh
Confidence 789999999999888
No 56
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=53.18 E-value=96 Score=30.19 Aligned_cols=87 Identities=13% Similarity=0.012 Sum_probs=49.3
Q ss_pred hhhccCCCcEEEEeCCceeeeHHHHHHHhhc--CCCCCeeEEeeeCCCCCccCCCCCc--ccCC--C---CCCCCCCCCC
Q 006036 499 FGTKILPAKYIMKTDDDAFVRIDEVLSNLKE--KPSNGLLFGLMSYDSSPQRDKDSKW--YISN--E---EWPHSSYPPW 569 (663)
Q Consensus 499 w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~--~~~~~ly~G~v~~~~~P~Rd~~~Kw--yVs~--e---eyp~~~YPpY 569 (663)
.+......+|++.+|+|..+..+.|...+.. ......+.|......... .....+ +.+. . .+....-.+.
T Consensus 72 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (224)
T cd06442 72 EGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVSD 150 (224)
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3333445699999999999998888887775 344456666543221111 000000 0000 0 0000111345
Q ss_pred cCCCccccCHHHHHHHH
Q 006036 570 AHGPGYIISRDIAKFIV 586 (663)
Q Consensus 570 c~G~GYVLSrdla~~I~ 586 (663)
+.|++.++++++++.+.
T Consensus 151 ~~~~~~~~~r~~~~~ig 167 (224)
T cd06442 151 PTSGFRAYRREVLEKLI 167 (224)
T ss_pred CCCccchhhHHHHHHHh
Confidence 67888899999999997
No 57
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=51.92 E-value=91 Score=32.72 Aligned_cols=160 Identities=18% Similarity=0.078 Sum_probs=85.9
Q ss_pred CCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEE--eecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHH
Q 006036 447 GDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIM--PFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVL 524 (663)
Q Consensus 447 ~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~l--df~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll 524 (663)
..+.++++=+.+. ......|.+-.+.++-+..+ +....+-+. . .+...+......+|++..|.|+++..+.+.
T Consensus 33 ~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~---a-~arN~g~~~A~~d~l~flD~D~i~~~~~i~ 107 (281)
T PF10111_consen 33 PDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSR---A-KARNIGAKYARGDYLIFLDADCIPSPDFIE 107 (281)
T ss_pred CCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCH---H-HHHHHHHHHcCCCEEEEEcCCeeeCHHHHH
Confidence 3455544444333 23346677777777766222 222211221 1 123445555699999999999999999999
Q ss_pred HHhh---c--CCCCCeeEEeeeCCCCCccCCC---CCcccCCC----C--CCCCCCC-CCcCCCccccCHHHHHHHHhhh
Q 006036 525 SNLK---E--KPSNGLLFGLMSYDSSPQRDKD---SKWYISNE----E--WPHSSYP-PWAHGPGYIISRDIAKFIVQGH 589 (663)
Q Consensus 525 ~~L~---~--~~~~~ly~G~v~~~~~P~Rd~~---~KwyVs~e----e--yp~~~YP-pYc~G~GYVLSrdla~~I~~~~ 589 (663)
+.+. . .....++.+.+.....+..... .+...... . .....+. ....|++.+++++.-..|-=-
T Consensus 108 ~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGf- 186 (281)
T PF10111_consen 108 KLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGF- 186 (281)
T ss_pred HHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCC-
Confidence 9888 3 2333444443332222111000 00000000 0 0011111 233568899999988777542
Q ss_pred cccccCCCCcchhHHHHHHHHhhc
Q 006036 590 QERDLKLFKLEDVAMGIWIEQFKN 613 (663)
Q Consensus 590 ~~~~l~~f~lEDV~iGi~L~~l~~ 613 (663)
.........||.-++.=|.+.+.
T Consensus 187 -DE~f~G~G~ED~D~~~RL~~~~~ 209 (281)
T PF10111_consen 187 -DERFRGWGYEDIDFGYRLKKAGY 209 (281)
T ss_pred -CccccCCCcchHHHHHHHHHcCC
Confidence 23444567999999888877653
No 58
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=49.14 E-value=93 Score=33.64 Aligned_cols=132 Identities=14% Similarity=0.068 Sum_probs=67.4
Q ss_pred CeEEEEEEeccCChhhhHHHHHHHhhcCC-EEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHH
Q 006036 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGD-IQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (663)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Ea~~ygD-II~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~ 526 (663)
.+.++++-..+.+... +.+++-++.+++ ++......++ -|.- .+..+....+.+|++..|+|.-.+++.+.+.
T Consensus 38 ~~EIIvVDDgS~D~T~-~il~~~~~~~~~~v~~i~~~~n~----G~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 38 EYEILLIDDGSSDNSA-EMLVEAAQAPDSHIVAILLNRNY----GQHS-AIMAGFSHVTGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CEEEEEEeCCCCCcHH-HHHHHHHhhcCCcEEEEEeCCCC----CHHH-HHHHHHHhCCCCEEEEECCCCCCCHHHHHHH
Confidence 4667677665555432 333333344444 4444333332 2221 1223334457899999999999999998888
Q ss_pred hhc-CCCCCeeEEeeeC-CCCCccCCCCCcccCC-CCCCCCCCCCCcCCCcc-ccCHHHHHHHHh
Q 006036 527 LKE-KPSNGLLFGLMSY-DSSPQRDKDSKWYISN-EEWPHSSYPPWAHGPGY-IISRDIAKFIVQ 587 (663)
Q Consensus 527 L~~-~~~~~ly~G~v~~-~~~P~Rd~~~KwyVs~-eeyp~~~YPpYc~G~GY-VLSrdla~~I~~ 587 (663)
++. ....+...|.... ...+.|.-.++.+--. .......++.+ ++|| ++++++++.+..
T Consensus 112 ~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~--~~gfr~~~r~~~~~l~~ 174 (325)
T PRK10714 112 VAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDY--GCMLRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCC--CcCeEEEcHHHHHHHHH
Confidence 877 3223455554321 1122221111111000 00112223333 3444 899999999865
No 59
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=48.24 E-value=2.6e+02 Score=26.99 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=55.2
Q ss_pred HhhhccCCCcEEEEeCCceeeeHHHHHHHhhcCCCCCeeEEeeeCC----CCCccCCCCCcccCCCCCCCCCCCCCcCCC
Q 006036 498 IFGTKILPAKYIMKTDDDAFVRIDEVLSNLKEKPSNGLLFGLMSYD----SSPQRDKDSKWYISNEEWPHSSYPPWAHGP 573 (663)
Q Consensus 498 ~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~~~~~~ly~G~v~~~----~~P~Rd~~~KwyVs~eeyp~~~YPpYc~G~ 573 (663)
..+......+|++.+|+|..+..+.|.+.+..........|..... ....+-...++... ......+ .++.
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~ 139 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRFDDPGPRLRLLELGANLR----SRLFGLP-YGDQ 139 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeeecCCccchhhhhhcccce----ecccCCC-cCCc
Confidence 3444445689999999999999887777665522233333332211 11111000111110 0001112 2356
Q ss_pred ccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHh
Q 006036 574 GYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQF 611 (663)
Q Consensus 574 GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l 611 (663)
|.++++++...+--- . ..+..||.-++.-+.+.
T Consensus 140 ~~~~r~~~~~~~G~f-d----~~~~~ED~d~~~r~~~~ 172 (221)
T cd02522 140 GLFIRRELFEELGGF-P----ELPLMEDVELVRRLRRR 172 (221)
T ss_pred eEEEEHHHHHHhCCC-C----ccccccHHHHHHHHHhC
Confidence 788999988777532 1 12278999887666554
No 60
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=45.72 E-value=5.4e+02 Score=31.44 Aligned_cols=193 Identities=9% Similarity=-0.025 Sum_probs=98.6
Q ss_pred CeEEEEEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCChhhhHHHHHHHhhcCCEEEEeecccCCcchHHH
Q 006036 414 RLVMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKT 493 (663)
Q Consensus 414 ~v~LlI~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDII~ldf~DsY~nLtlKt 493 (663)
...+-|+|+..-...--.+.|...=.+. .-.+..+++++. +.++.+...+++=.++|.++..+-... .. .+.|.
T Consensus 62 ~~~vsIlVPa~nE~~vi~~~i~~ll~~l---dYP~~eI~vi~~-~nD~~T~~~~~~l~~~~p~~~~v~~~~-~g-~~gKa 135 (727)
T PRK11234 62 EKPLAIMVPAWNETGVIGNMAELAATTL---DYENYHIFVGTY-PNDPATQADVDAVCARFPNVHKVVCAR-PG-PTSKA 135 (727)
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHhC---CCCCeEEEEEec-CCChhHHHHHHHHHHHCCCcEEEEeCC-CC-CCCHH
Confidence 3556677776544443444444321111 112355555544 444444555666667888864433333 12 24576
Q ss_pred HHHHHhhhc-------cC--CCcEEEEeCCceeeeHHHHHHHhhc-CCCCCeeEEeeeCCCCCccCCCCCcccCC---CC
Q 006036 494 IAICIFGTK-------IL--PAKYIMKTDDDAFVRIDEVLSNLKE-KPSNGLLFGLMSYDSSPQRDKDSKWYISN---EE 560 (663)
Q Consensus 494 la~l~w~~~-------~~--~akyvlKvDDDtfVnvd~Ll~~L~~-~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~---ee 560 (663)
.+. .++.. +. .++.++-.|-|+.|..+.|. .+.. ......+-+.+. +..|+ .+.| +.. .+
T Consensus 136 ~aL-N~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~---p~~~~-~~~~-~~~~~~~E 208 (727)
T PRK11234 136 DCL-NNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY---PFERE-WTHF-TSGTYIDE 208 (727)
T ss_pred HHH-HHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc---CCCcc-HHHH-HHHHHHHH
Confidence 542 23211 12 34557779999999999997 3333 222233333222 11111 1111 100 12
Q ss_pred CC----C-----CC--CCCCcCCCccccCHHHHHHHHhhhcc-cccCCCCcchhHHHHHHHHhhcCCCeeeecc
Q 006036 561 WP----H-----SS--YPPWAHGPGYIISRDIAKFIVQGHQE-RDLKLFKLEDVAMGIWIEQFKNTGQEVHYMS 622 (663)
Q Consensus 561 yp----~-----~~--YPpYc~G~GYVLSrdla~~I~~~~~~-~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~ 622 (663)
|. . .. -+-.+.|.|..+++..++.+.+.-.. ......--||.-+|+-+... |..+.+..
T Consensus 209 Fa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~---G~~v~f~~ 279 (727)
T PRK11234 209 FAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEK---GMREIFVR 279 (727)
T ss_pred HHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHC---CCEEEEcc
Confidence 21 0 11 24467899999998876666553100 12233457999999999876 45565544
No 61
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=42.67 E-value=1.8e+02 Score=36.11 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=68.0
Q ss_pred cchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeeEEeeeC-CCCC-ccCCCCCc-ccCCCC-
Q 006036 488 LISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSY-DSSP-QRDKDSKW-YISNEE- 560 (663)
Q Consensus 488 nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~---~~~~~ly~G~v~~-~~~P-~Rd~~~Kw-yVs~ee- 560 (663)
|.-.|.- .+..+.+..+.+|++..|.|+.+..+-|...+.. ++.-.++-+.... +..| .|+- +.. ..+.+.
T Consensus 323 n~~gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl-~~~~~~~~e~~ 400 (852)
T PRK11498 323 HEHAKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNL-GRFRKTPNEGT 400 (852)
T ss_pred CCcchHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhh-HHHhhcccchh
Confidence 3334543 2455555568899999999999998888776543 3332222221111 1111 1110 000 000000
Q ss_pred --C----CC--CCCCCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHhhcCCCeeeecc
Q 006036 561 --W----PH--SSYPPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQFKNTGQEVHYMS 622 (663)
Q Consensus 561 --y----p~--~~YPpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l~~~gi~v~~~~ 622 (663)
| +. ..--.+|.|++.++.+++++.+--- .. ....||..+++-+... |..+.|..
T Consensus 401 ~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGf-d~----~titED~dlslRL~~~---Gyrv~yl~ 462 (852)
T PRK11498 401 LFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGI-AV----ETVTEDAHTSLRLHRR---GYTSAYMR 462 (852)
T ss_pred HHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCC-CC----CccCccHHHHHHHHHc---CCEEEEEe
Confidence 0 00 0012457899999999999988532 11 1246999999988865 45565543
No 62
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=42.56 E-value=1.7e+02 Score=30.09 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=54.4
Q ss_pred HHhhhccCCCcEEEEeCCceeeeHHHHHHHhhc-C-CC-CCeeEEeeeCCC-CCccCC---CCCcccCCC--CCCCCC-C
Q 006036 497 CIFGTKILPAKYIMKTDDDAFVRIDEVLSNLKE-K-PS-NGLLFGLMSYDS-SPQRDK---DSKWYISNE--EWPHSS-Y 566 (663)
Q Consensus 497 l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~L~~-~-~~-~~ly~G~v~~~~-~P~Rd~---~~KwyVs~e--eyp~~~-Y 566 (663)
++++.. .+++|++..|||+.+..+.|...+.. . .. .-.++|...... ...+.+ ...+..... ...... -
T Consensus 66 i~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (281)
T TIGR01556 66 LDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTPQK 144 (281)
T ss_pred HHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCcee
Confidence 344432 27899999999999998777776654 2 21 223333222111 000000 000100000 000111 1
Q ss_pred CCCcCCCccccCHHHHHHHHhhhcccccCCCCcchhHHHHHHHHh
Q 006036 567 PPWAHGPGYIISRDIAKFIVQGHQERDLKLFKLEDVAMGIWIEQF 611 (663)
Q Consensus 567 PpYc~G~GYVLSrdla~~I~~~~~~~~l~~f~lEDV~iGi~L~~l 611 (663)
..++.++|.++++++++.+-- +. ..+ ....||+-+.+=+.+.
T Consensus 145 ~~~~~~sg~li~~~~~~~iG~-fd-e~~-fi~~~D~e~~~R~~~~ 186 (281)
T TIGR01556 145 TSFLISSGCLITREVYQRLGM-MD-EEL-FIDHVDTEWSLRAQNY 186 (281)
T ss_pred ccEEEcCcceeeHHHHHHhCC-cc-Hhh-cccchHHHHHHHHHHC
Confidence 235566777899999988843 11 111 2345788765544443
No 63
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=35.79 E-value=2.2e+02 Score=31.34 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=45.4
Q ss_pred HHHhhhccCCCcEEEEeCCceeeeHH---HHHHHhhc---CCCCCeeEEeeeCCCCCccCCCCCcccCCCCCCCCCCC-C
Q 006036 496 ICIFGTKILPAKYIMKTDDDAFVRID---EVLSNLKE---KPSNGLLFGLMSYDSSPQRDKDSKWYISNEEWPHSSYP-P 568 (663)
Q Consensus 496 ~l~w~~~~~~akyvlKvDDDtfVnvd---~Ll~~L~~---~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~eeyp~~~YP-p 568 (663)
++.++....++++++.+|||..+.++ .+.+.|.. +++-..+.|.- . .|+....... |...|- .
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~N-d--------nG~~~~~~~~-~~~lyrs~ 157 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWN-D--------NGKEHFVDDT-PSLLYRTD 157 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeec-c--------CCcccccCCC-cceEEEec
Confidence 44444333479999999999999988 33333433 22222222321 1 1222111111 333333 6
Q ss_pred CcCCCccccCHHHHHHH
Q 006036 569 WAHGPGYIISRDIAKFI 585 (663)
Q Consensus 569 Yc~G~GYVLSrdla~~I 585 (663)
|+.|.|.++.+++-+.+
T Consensus 158 ff~glGWml~r~~W~e~ 174 (334)
T cd02514 158 FFPGLGWMLTRKLWKEL 174 (334)
T ss_pred CCCchHHHHHHHHHHHh
Confidence 78899999999998877
No 64
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=31.52 E-value=3.8e+02 Score=26.05 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=50.8
Q ss_pred CeEEEEEEeccCChhhhHHHHHHHhhcCCE-EEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHHHHHH
Q 006036 448 DLAVRFFIGLHKNRQVNFELWKEAQAYGDI-QIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDEVLSN 526 (663)
Q Consensus 448 ~V~v~FvvG~~~~~~~~~~L~~Ea~~ygDI-I~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~Ll~~ 526 (663)
...++.+-..+.+. ....+++..+.++.. ..+...... .+. ..+..+......+|++.+|+|..+..+.+...
T Consensus 30 ~~eiivvdd~S~D~-t~~~~~~~~~~~~~~i~~i~~~~n~----G~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKDG-TAEVARKLARKNPALIRVLTLPKNR----GKG-GAVRAGMLAARGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCCc-hHHHHHHHHHhCCCcEEEEEcccCC----CcH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence 45555554444443 334455555666664 333322221 111 22333444446799999999999999988888
Q ss_pred hhc--CCCCCeeEEeee
Q 006036 527 LKE--KPSNGLLFGLMS 541 (663)
Q Consensus 527 L~~--~~~~~ly~G~v~ 541 (663)
+.. ......++|...
T Consensus 104 ~~~~~~~~~~~v~g~r~ 120 (211)
T cd04188 104 EEALKTSGYDIAIGSRA 120 (211)
T ss_pred HHHHhccCCcEEEEEee
Confidence 875 444567777644
No 65
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=25.56 E-value=5.2e+02 Score=31.38 Aligned_cols=198 Identities=14% Similarity=0.104 Sum_probs=102.4
Q ss_pred CCeEEEEEEecCCCcHH-HHHHHHHHhcCCCCC-CCCCeEEEEEEeccCChhhhH----HHHHHHhhcC---CEEEEeec
Q 006036 413 KRLVMLIGVFSTGNNFE-RRMALRRSWMQYPAV-RSGDLAVRFFIGLHKNRQVNF----ELWKEAQAYG---DIQIMPFV 483 (663)
Q Consensus 413 ~~v~LlI~V~Sa~~n~~-rR~aIR~TW~~~~~v-~~~~V~v~FvvG~~~~~~~~~----~L~~Ea~~yg---DII~ldf~ 483 (663)
...++.|+|++.-...+ -+..|+.++.+-... ...++.+ |++..+.++++.. .+.+=.++|+ .|.. .
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~y---r 197 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIFY---R 197 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEE---E
Confidence 44567777877665533 235666666532211 1224555 8888877665322 1122233443 3433 3
Q ss_pred ccCCcchHHHHHHHHhhhcc-CCCcEEEEeCCceeeeHHHHHHHhhc---CCCCCeeEEeeeCCCCCccCCCCCcccCCC
Q 006036 484 DYYSLISLKTIAICIFGTKI-LPAKYIMKTDDDAFVRIDEVLSNLKE---KPSNGLLFGLMSYDSSPQRDKDSKWYISNE 559 (663)
Q Consensus 484 DsY~nLtlKtla~l~w~~~~-~~akyvlKvDDDtfVnvd~Ll~~L~~---~~~~~ly~G~v~~~~~P~Rd~~~KwyVs~e 559 (663)
..-+|.-.|.-..-.+.... .+++|++-.|-|+.+..+.|.+.+.. ++. +|-+.....+. +.. .++--..
T Consensus 198 ~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~----vGlVQt~~~~~-n~~-slfaR~q 271 (691)
T PRK05454 198 RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR----AGLIQTLPVAV-GAD-TLFARLQ 271 (691)
T ss_pred ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC----EEEEeCCccCc-CCC-CHHHHHH
Confidence 33345556766555554432 47899999999999999999998865 332 45444221111 111 1110000
Q ss_pred CCCCCCC-C-------------CCcCCCccccCHHHHHHHHhh--h-ccccc-CCCCcchhHHHHHHHHhhcCCCeeeec
Q 006036 560 EWPHSSY-P-------------PWAHGPGYIISRDIAKFIVQG--H-QERDL-KLFKLEDVAMGIWIEQFKNTGQEVHYM 621 (663)
Q Consensus 560 eyp~~~Y-P-------------pYc~G~GYVLSrdla~~I~~~--~-~~~~l-~~f~lEDV~iGi~L~~l~~~gi~v~~~ 621 (663)
.+....| | -.+.|...|+.++....+--- . ....+ ...--||..+|..++.. |..+.|.
T Consensus 272 qf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~---GyrV~~~ 348 (691)
T PRK05454 272 QFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRA---GWGVWLA 348 (691)
T ss_pred HHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHC---CCEEEEc
Confidence 0000000 0 012466677877776554210 0 00011 12356899999998875 4567666
Q ss_pred cC
Q 006036 622 SD 623 (663)
Q Consensus 622 ~~ 623 (663)
.+
T Consensus 349 pd 350 (691)
T PRK05454 349 PD 350 (691)
T ss_pred Cc
Confidence 55
No 66
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=23.35 E-value=3.8e+02 Score=22.93 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=29.9
Q ss_pred cCCEEEEeecccCCcchHHHHHHHHhhhccCCCcEEEEeCCceeeeHHH
Q 006036 474 YGDIQIMPFVDYYSLISLKTIAICIFGTKILPAKYIMKTDDDAFVRIDE 522 (663)
Q Consensus 474 ygDII~ldf~DsY~nLtlKtla~l~w~~~~~~akyvlKvDDDtfVnvd~ 522 (663)
+.++-...+.+.|..-.......-.+......++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQRAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHHHHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 4556666666666543333221112223335899999999999988765
No 67
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=22.40 E-value=2.3e+02 Score=29.99 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=26.7
Q ss_pred EEEecCCCcHHHHHHHHHHhcCCCCCCCCCeEEEEEEeccCC
Q 006036 419 IGVFSTGNNFERRMALRRSWMQYPAVRSGDLAVRFFIGLHKN 460 (663)
Q Consensus 419 I~V~Sa~~n~~rR~aIR~TW~~~~~v~~~~V~v~FvvG~~~~ 460 (663)
+.|.|-.+..+|+..++++-.... + +...||-+..+.
T Consensus 5 ~~vIsL~~s~~R~~~~~~~f~~~~----~-~~f~~~~av~~~ 41 (255)
T COG3306 5 IHVISLKSSQERLEHVAETFEALG----G-LPFQRFDAVNGK 41 (255)
T ss_pred eehhhhhhhHHHHHHHHHHHhhcc----C-CCceEeeccCcc
Confidence 456667778889999999987742 2 566777777664
No 68
>PLN03181 glycosyltransferase; Provisional
Probab=22.40 E-value=4.6e+02 Score=30.05 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=52.0
Q ss_pred HHHHHHhcCCC--CCCCCCeEEEEEEeccC----C---hh-hhHHH---HHHHhhcC-CEEEEee-cc-cCCcchHHHHH
Q 006036 432 MALRRSWMQYP--AVRSGDLAVRFFIGLHK----N---RQ-VNFEL---WKEAQAYG-DIQIMPF-VD-YYSLISLKTIA 495 (663)
Q Consensus 432 ~aIR~TW~~~~--~v~~~~V~v~FvvG~~~----~---~~-~~~~L---~~Ea~~yg-DII~ldf-~D-sY~nLtlKtla 495 (663)
++-|+.|.+.. ...+++-+++.|.|..+ + .. +...+ .+=+++|| ++...+. .| .|...+.|..+
T Consensus 109 D~kR~~Wl~~~p~~~~~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~WaKipa 188 (453)
T PLN03181 109 DEKRAEWLKLHPSFAPGAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWAKLPV 188 (453)
T ss_pred HHHHHHHHHhCCCCCCCCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhhHHHH
Confidence 34455676521 12244555666666541 1 11 22222 23377788 4543332 23 56667778777
Q ss_pred HHHhhhccCCCcEEEEeCCceeee
Q 006036 496 ICIFGTKILPAKYIMKTDDDAFVR 519 (663)
Q Consensus 496 ~l~w~~~~~~akyvlKvDDDtfVn 519 (663)
+..-...+|+++||.-.|.|+++-
T Consensus 189 lRaAM~a~PeAEWfWWLDsDALIM 212 (453)
T PLN03181 189 VRAAMLAHPEAEWIWWVDSDAVFT 212 (453)
T ss_pred HHHHHHHCCCceEEEEecCCceee
Confidence 666557799999999999999873
No 69
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=20.14 E-value=1.3e+02 Score=34.89 Aligned_cols=58 Identities=26% Similarity=0.351 Sum_probs=37.9
Q ss_pred CCCcchhHHHHHHHHhhcCCCeeeeccCCccc-------c-------CCcccceEEEE-ecCHHHHHHHHHHhhc
Q 006036 596 LFKLEDVAMGIWIEQFKNTGQEVHYMSDDRFY-------N-------AGCESDYILAH-YQGPRMVLCLWEKLQK 655 (663)
Q Consensus 596 ~f~lEDV~iGi~L~~l~~~gi~v~~~~~~rf~-------~-------~~C~~~~I~~H-y~sP~~M~~lW~~l~~ 655 (663)
+...||+.+|+|+.+. +|++.......-++ . ..-..+.+|+| -.+|..|+.+...+..
T Consensus 10 ~s~~~Dv~lGRCI~~~--~gi~Ct~~~q~l~y~~~~~~~~~~~~~~~~~~~~~AiTlHPvk~p~~mYrLH~y~~~ 82 (499)
T PF05679_consen 10 YSNHEDVELGRCIKKF--TGISCTWSYQGLFYHNYELNKNDFIGDLKNKEFHNAITLHPVKSPAYMYRLHRYFLS 82 (499)
T ss_pred CCCCchhHHHHHHHHh--cCCCeeecccceEEEeeccCCCcccccccchhhhcceeeccCCCHHHHHHHHHHHHH
Confidence 3467999999999976 45655433321111 0 11124679998 5779999999988764
No 70
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=20.14 E-value=2.5e+02 Score=26.87 Aligned_cols=39 Identities=21% Similarity=0.114 Sum_probs=31.2
Q ss_pred cCCCCCCCCcEEEEEEEecCeEEEEeCCeEeEEeecccc
Q 006036 327 SNFPFVDGNPFTTTIWVGLDGFHMTVNGRHETSLAYREK 365 (663)
Q Consensus 327 ~~fPF~~G~~F~l~i~~~~~gf~v~VnG~h~~sF~yR~~ 365 (663)
....+.+|+=.+++|.|..+.+.+.|||+.+.++.-...
T Consensus 120 ~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~~~ 158 (185)
T PF06439_consen 120 VNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDPSF 158 (185)
T ss_dssp S--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETTSH
T ss_pred ccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcCCC
Confidence 345678999999999999999999999999988876653
Done!