Query 006037
Match_columns 663
No_of_seqs 165 out of 231
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 17:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2432 Uncharacterized conser 100.0 1E-163 3E-168 1286.7 43.4 561 1-641 1-565 (565)
2 PF09794 Avl9: Transport prote 100.0 1.1E-39 2.4E-44 351.2 19.9 251 26-367 1-313 (379)
3 PF08616 SPA: Stabilization of 99.9 8.8E-25 1.9E-29 200.1 10.1 100 261-368 3-108 (113)
4 KOG3823 Uncharacterized conser 99.9 1.6E-23 3.4E-28 223.1 17.7 247 25-367 10-317 (630)
5 PF07792 Afi1: Docking domain 99.8 4.2E-20 9E-25 175.9 10.4 143 26-178 2-144 (145)
6 smart00799 DENN Domain found i 99.8 1.2E-17 2.5E-22 165.1 15.9 166 155-356 2-169 (183)
7 PF02141 DENN: DENN (AEX-3) do 99.6 8E-15 1.7E-19 144.4 11.7 165 153-352 1-168 (185)
8 PF09804 DUF2347: Uncharacteri 99.2 1.3E-09 2.8E-14 114.8 21.2 250 29-368 1-275 (280)
9 KOG3569 RAS signaling inhibito 99.1 2.9E-09 6.3E-14 113.3 19.7 252 18-354 6-263 (425)
10 KOG4704 Uncharacterized conser 98.1 8E-05 1.7E-09 79.1 15.3 266 26-367 3-290 (431)
11 KOG3570 MAPK-activating protei 97.9 3.5E-05 7.5E-10 89.2 10.0 81 270-355 306-386 (1588)
12 KOG1090 Predicted dual-specifi 96.8 0.012 2.6E-07 70.1 12.2 181 136-356 85-268 (1732)
13 KOG2432 Uncharacterized conser 95.3 0.002 4.4E-08 71.0 -2.7 114 535-658 213-332 (565)
14 KOG2080 Uncharacterized conser 94.7 0.14 3.1E-06 60.5 9.7 271 17-324 61-377 (1295)
15 smart00800 uDENN Domain always 90.2 0.98 2.1E-05 39.6 6.7 65 24-88 3-75 (89)
16 KOG2127 Calmodulin-binding pro 90.1 1.1 2.3E-05 55.1 8.9 76 271-354 33-108 (1020)
17 PF03456 uDENN: uDENN domain; 77.0 4.1 8.9E-05 33.5 4.3 49 40-89 2-52 (65)
18 PF03455 dDENN: dDENN domain; 61.4 7.7 0.00017 32.1 2.8 66 465-553 3-68 (68)
19 smart00801 dDENN Domain always 58.9 14 0.0003 30.6 3.9 67 466-553 3-69 (69)
20 PF03808 Glyco_tran_WecB: Glyc 44.0 49 0.0011 32.5 5.7 87 279-367 44-136 (172)
21 PF12095 DUF3571: Protein of u 41.2 29 0.00062 30.8 3.1 28 610-638 23-50 (83)
22 TIGR03209 P21_Cbot clostridium 38.9 96 0.0021 28.7 6.6 22 620-641 97-118 (142)
23 cd06533 Glyco_transf_WecG_TagA 35.5 1.3E+02 0.0028 29.6 7.1 79 283-366 46-133 (171)
24 cd00923 Cyt_c_Oxidase_Va Cytoc 33.7 2E+02 0.0043 26.6 7.3 49 535-600 10-58 (103)
25 PF10906 DUF2697: Protein of u 31.6 45 0.00097 28.5 2.7 24 536-559 4-27 (68)
26 PRK09644 RNA polymerase sigma 29.0 1.7E+02 0.0037 27.8 6.7 26 616-641 94-119 (165)
27 PF12126 DUF3583: Protein of u 25.7 1.8E+02 0.004 31.5 6.6 51 581-632 101-152 (324)
28 PF05347 Complex1_LYR: Complex 23.4 67 0.0015 25.5 2.3 40 533-573 3-42 (59)
29 PF15320 RAM: mRNA cap methyla 23.1 47 0.001 29.3 1.4 15 319-333 10-24 (81)
30 PRK12537 RNA polymerase sigma 21.6 1.7E+02 0.0037 28.3 5.2 127 506-641 7-144 (182)
31 PRK11922 RNA polymerase sigma 20.9 2.4E+02 0.0052 28.7 6.3 134 497-641 5-160 (231)
32 PRK09643 RNA polymerase sigma 20.8 1.6E+02 0.0035 28.9 4.9 26 616-641 120-145 (192)
33 COG4220 Phage DNA packaging pr 20.6 5.2E+02 0.011 26.0 8.1 46 470-518 11-56 (174)
No 1
>KOG2432 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.2e-163 Score=1286.73 Aligned_cols=561 Identities=40% Similarity=0.674 Sum_probs=509.4
Q ss_pred CCCCCCcccccccCCCC---ChhhhHhHhheeEEEEeeCCCCccceeeCCCCC-CChhhhhhcccccCCCccccccCccc
Q 006037 1 MSRSPSFSVKSELSLKP---DPERMQRWVVAFCTIRFDLEQGQLIEDCYPPGC-LTQDEELEVAYSSFPDSVSQHQNRSS 76 (663)
Q Consensus 1 ~~~~~~~~~~~~~~~~~---~~~~~~~Wv~~icVV~FDle~Gq~vE~~YP~~~-Ls~~Ek~~Ia~lsFPDs~~~~~n~~~ 76 (663)
|+|++++.|+.+++... ||++|++|+||||||+||||+||++|+|||+++ ||++|+.||||+||||| |++|
T Consensus 1 ~~re~~~~va~~~~~epd~e~w~~f~~WlHc~Cvv~FDLelGQalE~iYP~~~~ls~~E~~nicy~aFPDS-----Ns~~ 75 (565)
T KOG2432|consen 1 REREHQNVVATNSNSEPDAEDWDNFSQWLHCFCVVTFDLELGQALEVIYPPDFMLSDQEKINICYLAFPDS-----NSSC 75 (565)
T ss_pred CCCcccccccCCCCCCCCchhHHHHHHhheeeEEEEechhhcceeeeecCCccccccchheeeeEeecCCC-----Cccc
Confidence 79999999998887755 588899999999999999999999999999999 99999999999999999 8999
Q ss_pred CCeeEEEEEecCCCCCCCCCCCCccccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCCCccCcceee
Q 006037 77 IHDCIFFFRFQRHKNLPQGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQK 156 (663)
Q Consensus 77 ~~Dt~F~Frir~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~FRQ~kD~svkRGy~QK 156 (663)
+|||+||||+|+..+...-. .+ +++ |.++..+..|+||||||||++|++++|||+||
T Consensus 76 ~~Dt~F~fR~R~~~~~~~~~-------~~---------------dkd-~~~l~~d~~ylyG~VffRQ~~Dk~l~RGy~QK 132 (565)
T KOG2432|consen 76 MGDTKFHFRFRRTTRRDSLP-------GY---------------DKD-PPALRQDGMYLYGFVFFRQTRDKTLKRGYFQK 132 (565)
T ss_pred cccceEEEEEeccccccccc-------cc---------------cCC-CcccCCCCceeEEEEeeeeechhhhhhhhhhh
Confidence 99999999999975433310 11 223 66788999999999999999999999999999
Q ss_pred EEEEeeCCCchhhHHHHHHHhchhhhcccHHHHHHHHHHhccCCCCCCCCceeecccceeEEEeCCCCCCCCCccCcccc
Q 006037 157 SLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSE 236 (663)
Q Consensus 157 SlVIlS~lPy~~lF~~lL~~i~p~yF~~g~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~ 236 (663)
||||+|++||+++|++++..|+|.||+.|+.++|+||+.|+.||.|++|.++|||++|.+++++||+.++.|.+.+.
T Consensus 133 Svviis~LPf~~lf~tvl~~iap~yFe~gt~~ieaa~~~i~~Wp~p~~Gk~LELPll~c~~KI~lP~a~~~p~~ar~--- 209 (565)
T KOG2432|consen 133 SVVIISFLPFFSLFYTVLFQIAPFYFELGTNAIEAACCGIDRWPAPVPGKTLELPLLGCKKKIRLPTAHSLPFEARK--- 209 (565)
T ss_pred ceEEEEecccccccchHHhhhchHHHhcccchhhhhhccccCCCCccCCceeeecccceeeeeeccccccCcccccc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999977541
Q ss_pred ccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcc
Q 006037 237 ESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDF 316 (663)
Q Consensus 237 ~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~ 316 (663)
+.+.. ....++..+++.+||+|||+++..+..|||+|||+||+||||+|+|++|++|||+|.++++||+||.||.|+
T Consensus 210 ~~~~e---~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLWELvL~gEPilivaptPs~~Se~V~~lv~liaPL~~c~df 286 (565)
T KOG2432|consen 210 TGAVE---LRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLWELVLLGEPILIVAPTPSHCSEIVQLLVRLIAPLIYCPDF 286 (565)
T ss_pred cceee---eccCccccccCCcchhHHHHhhHHHHHHHHHHHHHHHhCCCeEEecCCchhhHHHHHHHHHHhhcceeCCCC
Confidence 11111 223466778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcchhhhhcccCCCCCCCeEEecchHHHHHhhcCCCeEEEcCCCCCCCcccccccccCCCCCCCCCCCccccc
Q 006037 317 RPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPAPNSNRVAFASRASSGKISGRPEGFGLQQ 396 (663)
Q Consensus 317 RPYFTIhD~dF~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 396 (663)
||||||||++|++|++.. ..+|.+|||||||||.|+++|||||++||+++++.++. ++
T Consensus 287 RPYFTIHDseF~e~tS~~--~sdP~~iLGVTNpFF~K~L~~wPHilrv~~~~~n~~~~--------------------~~ 344 (565)
T KOG2432|consen 287 RPYFTIHDSEFREYTSNV--DSDPLVILGVTNPFFRKALAHWPHILRVGDNQPNMQQQ--------------------QQ 344 (565)
T ss_pred CceeeeccHHHHHHHhcc--CCCCceEEecCCHHHHHHHhcCcceeeecCCCccccch--------------------hh
Confidence 999999999999999865 56699999999999999999999999999998764321 11
Q ss_pred cccccCccchhhHhhhccCCCccccccccchhhhhcccCCCCChHHHHHHHhcCCCCCccchhhhhchHHHHHHHHHHHH
Q 006037 397 LSLKFSPSSLLNVVKLRREGPLCLMTEHKEAIWSSYAATTKPDTSILNRLIDAGMSPRVEESMSVVNNEILRRHFLELTT 476 (663)
Q Consensus 397 ~~~k~~~~~~~~~~k~~~~~~~~~~~~~k~~~~t~y~~~l~~Dk~~lk~L~~~~~~~~~~e~~~~v~~~iLRRHF~eLT~ 476 (663)
.+ .+|.....-++++|+|+||+|+||++|||+++|||++|++++|++| |||++|||||+||||
T Consensus 345 k~-------------~~kl~~~~~~Lns~~gl~t~Ykp~lkkD~slikkll~g~~~krpee----vqs~ilrrhfLElt~ 407 (565)
T KOG2432|consen 345 KK-------------AKKLASANTTLNSKAGLYTKYKPYLKKDKSLIKKLLLGMKTKRPEE----VQSAILRRHFLELTQ 407 (565)
T ss_pred hh-------------hhhhhhhccccCCCccceeccccccCccHHHHHHHHHhcccCChHH----HHHHHHHHHHHHhcc
Confidence 11 1111111227899999999999999999999999999999999999 999999999999999
Q ss_pred HhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCCCChHHHHHHHHH
Q 006037 477 NFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAA 556 (663)
Q Consensus 477 ~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~spnF~~Wl~~r~~~ 556 (663)
+||+||+|||+++||.+++|||++||.+..|..||||.+||++|+ |||+++||||.||||||+|||||.|||..||+|
T Consensus 408 ~f~~p~~~Y~a~l~pqk~isP~~s~p~~~sF~~defl~~le~~Gp--~lt~r~kgdw~glyrrflrspnf~gwf~~rr~e 485 (565)
T KOG2432|consen 408 SFMIPLERYMASLMPQKDISPFKSPPNLNSFKLDEFLGTLEKAGP--QLTSRLKGDWKGLYRRFLRSPNFRGWFGARRRE 485 (565)
T ss_pred ceeecchHHHHhhCCccCCCcccCCCcccccCHHHHHHHHhhcCc--cccccccCCcHHHHHHHccCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999996 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHhcCcHHHH
Q 006037 557 AEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQEIQLQQSGCAATDSAEICQKLKGDLLAVFNVLPKDVQ 636 (663)
Q Consensus 557 ~~~~~~~l~~~a~~~~d~~~~~~~~~eve~vDl~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~lp~dlq 636 (663)
|+|+|++||++|+|.+|+.+|+++|+|||+||||+|||+|| +|... .+.+ ++..|.+||+.||++|++.||+|||
T Consensus 486 ~~q~l~~l~l~al~~~dl~~w~~~~~eve~vd~~lklk~kl-l~~d~---~~~~-~~~~t~qklr~~i~a~~~~lp~dlq 560 (565)
T KOG2432|consen 486 LQQTLQDLQLQALSVADLEHWAHDKQEVEIVDMILKLKQKL-LYGDK---ATQL-NNGSTQQKLRAQIEAMKGLLPPDLQ 560 (565)
T ss_pred HHHHHHHHHHHHHhHHhHHHHHhhcchHHHHHHHHHHHHHH-Hhhhh---hhcC-CCcchHHHHHHHHHHHHhhCCHhHH
Confidence 99999999999999999999999999999999999999999 44432 1222 6789999999999999999999999
Q ss_pred HHHhc
Q 006037 637 QLLLF 641 (663)
Q Consensus 637 ~~l~~ 641 (663)
+||+.
T Consensus 561 ~~lll 565 (565)
T KOG2432|consen 561 NVLLL 565 (565)
T ss_pred hhhcC
Confidence 99873
No 2
>PF09794 Avl9: Transport protein Avl9; InterPro: IPR018307 This entry represents the late secretory protein Avl9, which is required for the generation of secretory vesicles as well as for actin polarization and polarized growth. Avl9 is involved in exocytic transport from the Golgi. It has been speculated that Avl9 could play a role in deforming membranes for vesicle fission and/or in recruiting cargo [].
Probab=100.00 E-value=1.1e-39 Score=351.15 Aligned_cols=251 Identities=25% Similarity=0.427 Sum_probs=206.1
Q ss_pred hheeEEEEeeCCCCccceeeCCCC---C-CChhhhhhcccccCCCccccccCcccCCeeEEEEEecCCCCCCCCCCCCcc
Q 006037 26 VVAFCTIRFDLEQGQLIEDCYPPG---C-LTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSE 101 (663)
Q Consensus 26 v~~icVV~FDle~Gq~vE~~YP~~---~-Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~ 101 (663)
|+|||||+|||++||+||++|||+ . ..++||.+|||+|||||+ ++|++|++| |+++...
T Consensus 1 i~~i~vV~Fhh~~G~~vE~~ypp~~~~~~~~~~~~~~LpflAlPDg~-----h~~~ed~~y-F~l~~~~----------- 63 (379)
T PF09794_consen 1 ILCICVVGFHHERGPEVEYWYPPDSSDDPLSPQEWSNLPFLALPDGA-----HNSEEDFSY-FTLPYDA----------- 63 (379)
T ss_pred CeEEEEEecccccCCeEEEEeCCCCCccccchhhHhhCCccccCCcc-----ccCCCceEE-EEeccCC-----------
Confidence 689999999999999999999953 3 678899999999999995 568999988 7887642
Q ss_pred ccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeec-------CCCccCcceeeEEEEeeCCCchhhHHHHH
Q 006037 102 ITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRH-------DERLKRGGEQKSLVILSHGPFSSVFRPLL 174 (663)
Q Consensus 102 ~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~FRQ~k-------D~svkRGy~QKSlVIlS~lPy~~lF~~lL 174 (663)
....+..++||++||||.+ |++++|||+||||||||+.||+++|+..|
T Consensus 64 -------------------------~~~~~~~~lfGisc~RQi~~~~L~~~~~dvtRs~vQKsVvViS~~P~fg~~~~kL 118 (379)
T PF09794_consen 64 -------------------------SLNRDATTLFGISCFRQIKSSDLKNRDPDVTRSTVQKSVVVISRLPFFGLIKEKL 118 (379)
T ss_pred -------------------------CCCCCCceeeceeeHhhcCHHHhccCCCcccchheEEEEEEEECCCcHHHHHHHH
Confidence 1234578999999999965 79999999999999999999999999999
Q ss_pred HHhchhhhcccH----HHHHHHHHHhccCCCCCCCCceeecccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCC
Q 006037 175 QIMGPLYFDVGK----KAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQ 250 (663)
Q Consensus 175 ~~i~p~yF~~g~----~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~ 250 (663)
++++++||++++ ..|+.+++++++|.....++.+ + +
T Consensus 119 ~~vt~ayF~q~dF~~~~iL~~~~~~L~~~~~~~~~~~~-----~----------------------~------------- 158 (379)
T PF09794_consen 119 SIVTPAYFEQGDFSDTEILEDFYENLNNSFKSKNGESL-----Q----------------------E------------- 158 (379)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHhhccccccc-----c----------------------c-------------
Confidence 999999999884 8999999999998665544311 0 0
Q ss_pred CCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCC----CC-------------
Q 006037 251 SIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLL----CS------------- 313 (663)
Q Consensus 251 ~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~----y~------------- 313 (663)
...|..+++-..+..+-+++++||+|+|++++|||+|++...+|++++||+|||..+- .|
T Consensus 159 ---~~~y~glslr~lv~~fr~~~LvL~K~LLLekKIlfy~s~ve~l~~~~~sLiSLiPgli~~L~d~~~p~~~~~~~~~~ 235 (379)
T PF09794_consen 159 ---SDLYVGLSLRELVHNFRHKTLVLFKALLLEKKILFYGSPVERLCNFQLSLISLIPGLINNLQDSASPLLDSYESNWP 235 (379)
T ss_pred ---hhhhcCCCHHHHHHHHhHHHHHHHHHHHhcCCeEEEcCCHHHHHHHHHHHHHHhHHHHHhHhhccCcccchhhhccc
Confidence 0124445555566666789999999999999999999999999999999999997652 11
Q ss_pred -----------------------------CcccccccccCcchhhhhcccCCCCCCCeEEecchHHHHHhhcC-CCeEEE
Q 006037 314 -----------------------------IDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRK-IPHIVS 363 (663)
Q Consensus 314 -----------------------------gd~RPYFTIhD~dF~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~-WPhil~ 363 (663)
+-|-||++++--|. +++ ....++++|+||.+|.+.-+. -+.||+
T Consensus 236 ~~~~~sl~ts~r~s~l~~~GlPL~IF~kg~~f~PYlpLQqld~--L~~----~~~~s~lvGtTN~Lf~qqk~~~~DvlVd 309 (379)
T PF09794_consen 236 LSKPTSLKTSDRKSLLRFYGLPLQIFGKGSLFQPYLPLQQLDL--LSD----PNTKSYLVGTTNSLFLQQKDLYADVLVD 309 (379)
T ss_pred cCCCcccccCcccchHHHcCCCeeecCCCceecCcccHHHHHH--hhc----cCccEEEEeeChHHHHhCcccccCEEEE
Confidence 33789999887444 221 356789999999999998877 888899
Q ss_pred cCCC
Q 006037 364 VGSP 367 (663)
Q Consensus 364 l~~~ 367 (663)
+...
T Consensus 310 ld~~ 313 (379)
T PF09794_consen 310 LDTG 313 (379)
T ss_pred ecCC
Confidence 8753
No 3
>PF08616 SPA: Stabilization of polarity axis
Probab=99.91 E-value=8.8e-25 Score=200.06 Aligned_cols=100 Identities=37% Similarity=0.615 Sum_probs=87.7
Q ss_pred chhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhH--HHHHHHHHHHhhcC---CC-CCCcccccccccCcchhhhhccc
Q 006037 261 DLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQ--CCEAVASLVSLIAP---LL-CSIDFRPYFTIHDPQFAHLNSLQ 334 (663)
Q Consensus 261 ~lf~~f~~~l~~L~~LWEllLt~epIlVia~sP~~--~S~aVlaL~SLI~P---L~-y~gd~RPYFTIhD~dF~~~~~~~ 334 (663)
++++.+..+.+++|.|||++|++|||||+|++|+. ||++|+||++||+| +. |.+++|||||||| ++++
T Consensus 3 ~l~~~~~~f~~~i~~L~~alL~~krivv~s~~~~~~~~s~~Vlal~~Li~p~~~~~~~~~~~~PY~~i~~--~~~l---- 76 (113)
T PF08616_consen 3 SLLHLFQQFGPEIILLWEALLLGKRIVVYSPSPSAGEVSEFVLALCSLISPGQDLRYFSNRYFPYFTISD--LDEL---- 76 (113)
T ss_pred cHHHHHHhhhhHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHHHHHHHCcccchhcccccccceeechh--hhhh----
Confidence 45677778899999999999999999999999888 99999999999999 33 4588899999999 3333
Q ss_pred CCCCCCCeEEecchHHHHHhhcCCCeEEEcCCCC
Q 006037 335 EGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPA 368 (663)
Q Consensus 335 ~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~~ 368 (663)
...|++|+|||||||+++.++|||++++++..
T Consensus 77 --~~~~~~I~GvtNP~F~~~~~~wD~~~~l~~~~ 108 (113)
T PF08616_consen 77 --KSCPGYIAGVTNPIFEKRLDWWDHLCDLDTGE 108 (113)
T ss_pred --ccCCCEEEEeCCHHHHhccccCCEEEEcCCCe
Confidence 35678999999999999999999999998753
No 4
>KOG3823 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.91 E-value=1.6e-23 Score=223.09 Aligned_cols=247 Identities=20% Similarity=0.285 Sum_probs=190.9
Q ss_pred HhheeEEEEeeCCCCccceeeCCCC--CCChhhhhhcccccCCCccccccCcccCCeeEEEEEecCCCCCCCCCCCCccc
Q 006037 25 WVVAFCTIRFDLEQGQLIEDCYPPG--CLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEI 102 (663)
Q Consensus 25 Wv~~icVV~FDle~Gq~vE~~YP~~--~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~ 102 (663)
.+.|++||+|++.+||.||+.||.. .-.+++|.+++|+|+||++| +..+|++|| .+.-.
T Consensus 10 ~~KOG~~vgFHHkrGpeIE~~~~~pe~~~~p~~W~~LPflaLPDGsH-----sfeedfvyF-tLp~~------------- 70 (630)
T KOG3823|consen 10 PILCLLVVGFHHKRGPEIEFSHPSPERNECPSGWKYLPFLALPDGSH-----SFEEDFVYF-TLPSL------------- 70 (630)
T ss_pred ceEEEEeeecccccCCceeeecCCCCcCcCccccccCcceecCCCcc-----ccccceEEE-ecccc-------------
Confidence 4689999999999999999999643 35677999999999999976 368898884 55431
Q ss_pred cccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeee-------cCCCccCcceeeEEEEeeCCCchhhHHHHHH
Q 006037 103 TEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQR-------HDERLKRGGEQKSLVILSHGPFSSVFRPLLQ 175 (663)
Q Consensus 103 ~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~FRQ~-------kD~svkRGy~QKSlVIlS~lPy~~lF~~lL~ 175 (663)
....+.+.+||.+|+||. ||++++|..+|||||||+|+|.++..+..|.
T Consensus 71 ------------------------~~PnDegtifgvSC~RQi~~~~Lk~~~~DvTRStVQKavvVi~r~PifG~IkdkL~ 126 (630)
T KOG3823|consen 71 ------------------------YEPNDEGTIFGVSCYRQIRVEKLKIRTADVTRSTVQKAVVVIARLPIFGYIKDKLA 126 (630)
T ss_pred ------------------------cCCCCCccEEEEEeehhhhhhhhcccccccchhhhheeEEEEEcCCccceehhhhH
Confidence 112246799999999995 6899999999999999999999999999999
Q ss_pred Hhchhhhccc----HHHHHHHHHHhccCCCCCCCCceeecccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCC
Q 006037 176 IMGPLYFDVG----KKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQS 251 (663)
Q Consensus 176 ~i~p~yF~~g----~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~ 251 (663)
+++.+||++| ..+|..+|++++.+=.|.-.. -
T Consensus 127 iVtnAfF~QgDFs~~~~l~~~y~~l~a~~~~~l~R--------------~------------------------------ 162 (630)
T KOG3823|consen 127 IVTNAFFDQGDFSGTELLAKAYQQLNACLQDDLSR--------------R------------------------------ 162 (630)
T ss_pred HhhhhhhcccCcccHHHHHHHHHHHHhhcchhhhc--------------c------------------------------
Confidence 9999999976 489999999998863221000 0
Q ss_pred CCCccccccchhhhhHh----hhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCC-----------------
Q 006037 252 IPQGLFHDSDLFGTFRG----LLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPL----------------- 310 (663)
Q Consensus 252 ~P~~~~~~~~lf~~f~~----~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL----------------- 310 (663)
|.-.+| |-| .+++. .-++-.+|.+++|++++|||+|.+..+.|+..++|+|||.-+
T Consensus 163 -~e~~~h-IgL-~nLr~il~~wr~naLvLlK~~lL~krIvvyg~~ve~lcnlq~gl~SLIP~~Ms~lqDs~sp~a~~~e~ 239 (630)
T KOG3823|consen 163 -PERHFH-IGL-SNLREILLHWRHNALVLLKLMLLQKRIVVYGSPVEQLCNLQLGLASLIPSPMSDLQDSLSPEAQEAEA 239 (630)
T ss_pred -hhhhee-ehH-HHHHHHHHHHHHhHHHHHHHHHhcceEEEeCCcHHHHHHHHHHHHHhcCCcchhhhcccChhHHHHHH
Confidence 001111 111 13333 356688999999999999999999999999999999999533
Q ss_pred -----------------CC----------CCcccccccccCcchhhhhcccCCCCCCCeEEecchHHHHHhhcCCCeEEE
Q 006037 311 -----------------LC----------SIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVS 363 (663)
Q Consensus 311 -----------------~y----------~gd~RPYFTIhD~dF~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~ 363 (663)
.| ++-|-||...+-- ++. .....-.+++|+||-.|...-+--.||+-
T Consensus 240 ~L~~vaS~~~sd~~slla~~GfPl~IF~~G~lfsPYtpLq~m---~~l---~~~~~ls~~iGtsNtL~~~~~~~~~~~vv 313 (630)
T KOG3823|consen 240 ELEAVASVAASDEQSLLASAGFPLSIFASGNLFSPYTPLQYM---DLL---SDPMVLSYVIGTSNTLFQQKRQLADVLVV 313 (630)
T ss_pred hhccchhhhcccHHHHHHhcCCceeeeccCcccCCCCchHHH---hhh---cccceeEeeecCchHHHHHhhhhccEEEE
Confidence 01 2447888877642 222 12345679999999999999999999998
Q ss_pred cCCC
Q 006037 364 VGSP 367 (663)
Q Consensus 364 l~~~ 367 (663)
+.+.
T Consensus 314 ~~dt 317 (630)
T KOG3823|consen 314 IEDT 317 (630)
T ss_pred ecCc
Confidence 7664
No 5
>PF07792 Afi1: Docking domain of Afi1 for Arf3 in vesicle trafficking; InterPro: IPR012860 This domain occurs at the N terminus of Afi1, a protein necessary for vesicle trafficking in yeast. This domain is the interacting region of the protein which binds to Arf3. Afi1 is distributed asymmetrically at the plasma membrane and is required for polarized distribution of Arf3 but not of an Arf3 guanine nucleotide-exchange factor, Yel1p. However, Afi1 is not required for targeting of Arf3 or Yel1p to the plasma membrane. Afi1 functions as an Arf3 polarization-specific adapter and participates in development of polarity. Although Arf3 is the homologue of human Arf6 it does not function in the same way, not being necessary for endocytosis or for mating factor receptor internalisation. In the S phase, however, it is concentrated at the plasma membrane of the emerging bud. Because of its polarized localisation and its critical function in the normal budding pattern of yeast, Arf3 is probably a regulator of vesicle trafficking, which is important for polarized growth.
Probab=99.82 E-value=4.2e-20 Score=175.89 Aligned_cols=143 Identities=21% Similarity=0.346 Sum_probs=97.9
Q ss_pred hheeEEEEeeCCCCccceeeCCCCCCChhhhhhcccccCCCccccccCcccCCeeEEEEEecCCCCCCCCCCCCcccccc
Q 006037 26 VVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEI 105 (663)
Q Consensus 26 v~~icVV~FDle~Gq~vE~~YP~~~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~~~ 105 (663)
|++|++++||++.|++|+|+||...-+.+++.+||.+|+||++|. ..+|+++||--+............+.
T Consensus 2 veyIL~AEFDid~Gp~l~hQYP~~i~g~~de~~LAelMLPDg~h~-----r~~DwTvFfL~~~~~~~~~~~~~~~~---- 72 (145)
T PF07792_consen 2 VEYILLAEFDIDKGPVLKHQYPSPIPGLEDEHMLAELMLPDGAHK-----RSEDWTVFFLNRDKSTEEFQLFKNKK---- 72 (145)
T ss_pred eeEEEEEEEecCcCCEEEEeCCCCccCCccHHHHHHhhCCccccc-----ccCCEEEEEEccCCCCchhhhccccc----
Confidence 689999999999999999999998633228999999999999985 35695555533333211111000000
Q ss_pred ccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCCCccCcceeeEEEEeeCCCchhhHHHHHHHhc
Q 006037 106 NDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMG 178 (663)
Q Consensus 106 ~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~FRQ~kD~svkRGy~QKSlVIlS~lPy~~lF~~lL~~i~ 178 (663)
+.. .++...+.+..+.+.......+...+|+++++|+++|++++||..+|||+|+|++||+.+|+++|.++.
T Consensus 73 ~~~-~~~~~n~~~~~~~~~~~~~~~~~~~ly~ln~v~~k~D~~~rRGA~vKa~aI~T~~~~~~ifKPlL~laL 144 (145)
T PF07792_consen 73 SPS-NSSDNNSNNIEESSNDDENQEGPPPLYVLNLVNTKHDKTVRRGAVVKAMAICTRHPFFHIFKPLLLLAL 144 (145)
T ss_pred ccc-ccccccccccccccccccccCCCCceEEEEeeccccCcccccccceeEEEEEcccHHHHHHhHHHHHhh
Confidence 000 000000000001112223455678999999999999999999999999999999999999999997754
No 6
>smart00799 DENN Domain found in a variety of signalling proteins, always encircled by uDENN and dDENN. The DENN domain is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=99.76 E-value=1.2e-17 Score=165.13 Aligned_cols=166 Identities=21% Similarity=0.329 Sum_probs=135.3
Q ss_pred eeEEEEeeCCCchhhHHHHHHHhchhhhcccHHHHHHHHHHhccCCCCCCCCceeecccceeEE--EeCCCCCCCCCccC
Q 006037 155 QKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLK--VNLPPAHSLPLESG 232 (663)
Q Consensus 155 QKSlVIlS~lPy~~lF~~lL~~i~p~yF~~g~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~--v~iP~~~~~p~~~~ 232 (663)
-|++||+||+||++.|+.+|..+...|+...+..+|.+++++. ||.|.||.++.+..+|.... +.-|..
T Consensus 2 p~~icilS~~P~~~~f~~~L~~l~~~~~~~~~~~~e~~~~~~~-~p~P~pg~~~~~~~~~~~~~~~~~~p~~-------- 72 (183)
T smart00799 2 PKCICILSRLPFFELFRKILNELYRLLPSSSNLPLELLISLLL-YPVPPPGGSLVLVSLGPGDLIELQRPLD-------- 72 (183)
T ss_pred CeEEEEEeCCcHHHHHHHHHHHHHHHHccCccchHHHHHHHhC-CCCCcCCCeEEEEEcCCCCcEEEECCCC--------
Confidence 4899999999999999999999999999877888898888886 89999999988876663322 112211
Q ss_pred ccccccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCC
Q 006037 233 MLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLC 312 (663)
Q Consensus 233 ~~~~~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y 312 (663)
...|...++...+|++|. ..++..||+++|++++|+|+|.+++.+|.+|.|+++||.|++|
T Consensus 73 -----------------~~lp~~~~~~~~lf~~l~--~~~i~~l~~~~LlE~~Ii~~s~~~~~ls~~~~~l~~ll~Pf~w 133 (183)
T smart00799 73 -----------------SSLPLIDFSLHELFECLG--VENILQLFAALLLERRIIFTSSNLSTLSAVIEALLALLYPFVW 133 (183)
T ss_pred -----------------CCCCCCCccHHHHHHhCC--HHHHHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHHhCCccC
Confidence 111333455556777764 7999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCcchhhhhcccCCCCCCCeEEecchHHHHHhhc
Q 006037 313 SIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALR 356 (663)
Q Consensus 313 ~gd~RPYFTIhD~dF~~~~~~~~~~~~p~~IlGVTNPfF~k~~~ 356 (663)
.+.|.|....+. .++. ++|.++|+||++.++.+.-+
T Consensus 134 ~~~~iP~lp~~l---~~~l-----~aP~P~iiGv~~~~~~~~~~ 169 (183)
T smart00799 134 QHIYIPILPASL---LDVL-----SAPTPFIIGVHSSYFEEVKE 169 (183)
T ss_pred CceEEEECCHHH---HHHh-----cCCCCEEEEechhHhHHhhc
Confidence 999999776654 4544 47899999999999987654
No 7
>PF02141 DENN: DENN (AEX-3) domain; InterPro: IPR001194 The human serine- and leucine-rich DENN protein possesses a RGD cellular adhesion motif and a leucine-zipper-like motif associated with protein dimerization, and shows partial homology to the receptor binding domain of tumor necrosis factor alpha. DENN is virtually identical to MADD, a human MAP kinase-activating death domain protein that interacts with type I tumor necrosis factor receptor. DENN displays significant homology to Rab3 GEP, a rat GDP/GTP exchange protein specific for Rab3 small G proteins implicated in intracellular vesicle trafficking. DENN also exhibits strong similarity to Caenorhabditis elegans AEX-3, which interacts with Rab3 to regulate synaptic vesicle release []. The DENN domain is always encircled on both sides by more divergent domains, known as uDENN (IPR005113 from INTERPRO) and dDENN (IPR005112 from INTERPRO), which could play a key role in DENN function.; PDB: 3TW8_A.
Probab=99.58 E-value=8e-15 Score=144.44 Aligned_cols=165 Identities=24% Similarity=0.381 Sum_probs=104.9
Q ss_pred ceeeEEEEeeCCCchhhHHHHHHHhchhhhcccHHHHHHHHHH-hccCCCCCCCCceeecc--cceeEEEeCCCCCCCCC
Q 006037 153 GEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASY-VSIWPSPVPGKLMELPI--GNAMLKVNLPPAHSLPL 229 (663)
Q Consensus 153 y~QKSlVIlS~lPy~~lF~~lL~~i~p~yF~~g~~~LE~a~~~-I~~WP~p~pg~~l~Lp~--lg~vl~v~iP~~~~~p~ 229 (663)
|++|++|++|++||+.+|+.+|+.+...+.+.....+|..+.+ +.++|.|.+|.+..... .+..+.+..|...+.
T Consensus 1 y~p~~~clvS~~p~~~~f~~~L~~i~~~~~~~~~~~l~~~i~~~~~~~~~P~~g~~~~~~~~~~~~~~~~~~p~~~~l-- 78 (185)
T PF02141_consen 1 YVPKAICLVSRYPFFDLFREILKIIYNLYKSSRINPLEQFISNLLYSIPLPPPGSTIVFFSPFKNEKIIFQRPSNNDL-- 78 (185)
T ss_dssp ----EEEEEESS--HHHHHHHHHHHHHHHHTT-HHHHHHHHHH-HHHS----TT-B--------------B---SSS---
T ss_pred CCceEEEEECCCcHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCCCcceeeecccccccccccCCCccCC--
Confidence 7899999999999999999999999999998877888888888 78899999999888744 233333434432111
Q ss_pred ccCccccccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcC
Q 006037 230 ESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAP 309 (663)
Q Consensus 230 ~~~~~~~~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~P 309 (663)
|...+.-..+|+++. ..++..+|+++|++++|+|+|.+++..|.+|.|+.+||.|
T Consensus 79 -----------------------p~~~~~~~~lf~~l~--~~~i~~l~~~lL~E~~Ii~~S~~~~~ls~~~~~l~~ll~P 133 (185)
T PF02141_consen 79 -----------------------PLSDFSLSPLFSCLS--IDNILKLFSALLLERRIIFVSSNLSLLSSCVEALLSLLYP 133 (185)
T ss_dssp -------------------------TSHHHHHHHHHS---HHHHHHHHHHHTTT-EEEEEES-HHHHHHHHHHHHHTTTT
T ss_pred -----------------------CccccchhHHHhcCC--HHHHHHHHHHHHHhCCEEEEeCchhhHHHHHHHHHHHccC
Confidence 221122223444442 6899999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccCcchhhhhcccCCCCCCCeEEecchHHHH
Q 006037 310 LLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFL 352 (663)
Q Consensus 310 L~y~gd~RPYFTIhD~dF~~~~~~~~~~~~p~~IlGVTNPfF~ 352 (663)
+.+.+.|.|+...+-.|+ . ++|.|+|+||+-.++.
T Consensus 134 f~w~~~~ip~LP~~l~~~---l-----~aP~P~iiGv~~~~~~ 168 (185)
T PF02141_consen 134 FQWQHVYIPVLPPSLLDY---L-----EAPTPFIIGVHSSFFE 168 (185)
T ss_dssp S---SEEESS--GGGGGG---G-----G-SS-EEEEEECCCHH
T ss_pred cccCceEEeecCHHHHhh---c-----CCCCCEEEEEechhhh
Confidence 999999999998765444 3 3788999999998887
No 8
>PF09804 DUF2347: Uncharacterized conserved protein (DUF2347); InterPro: IPR018626 Members of this family of hypothetical proteins have no known function.
Probab=99.21 E-value=1.3e-09 Score=114.78 Aligned_cols=250 Identities=20% Similarity=0.289 Sum_probs=163.4
Q ss_pred eEEEEeeCCCCccceeeCC-CCCCChhhhhhcccccCCCccccccCcccCCeeEEEEEecCCCCCCCCCCCCcccccccc
Q 006037 29 FCTIRFDLEQGQLIEDCYP-PGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEIND 107 (663)
Q Consensus 29 icVV~FDle~Gq~vE~~YP-~~~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~~~~~ 107 (663)
|.+|.||...|-+|+.++| ++. +..+|=|-|+|-|.|. ..+|++|| + +
T Consensus 1 lFl~~FD~k~Gn~i~W~~~~~~i----~L~gVEfKsLPSGlH~-----v~~D~VyF-~--~------------------- 49 (280)
T PF09804_consen 1 LFLVKFDVKKGNTIVWSRPAPDI----DLEGVEFKSLPSGLHE-----VDEDVVYF-V--H------------------- 49 (280)
T ss_pred CEEEEecCCCCcEEEEeccCCCC----ccCCeeEecCCccccc-----ccccEEEE-e--c-------------------
Confidence 4689999999999999999 554 4555889999999872 57889984 4 1
Q ss_pred ccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCC-CccCcceeeEEEEeeCCCchh-----hHHHHHHHhchhh
Q 006037 108 KITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDE-RLKRGGEQKSLVILSHGPFSS-----VFRPLLQIMGPLY 181 (663)
Q Consensus 108 ~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~FRQ~kD~-svkRGy~QKSlVIlS~lPy~~-----lF~~lL~~i~p~y 181 (663)
..+||.++|+|.+.. ...||..-+||=||+..|+-- -|...|+.++..+
T Consensus 50 -------------------------~~~~Gls~F~~~~~~~~~~r~arM~SvGVL~~~~~~~~~~~w~h~~~L~~l~~~~ 104 (280)
T PF09804_consen 50 -------------------------DGYYGLSCFRQNPADEEEERGARMYSVGVLVPPPNGFYGRLWRHAEFLEELARHL 104 (280)
T ss_pred -------------------------CCEEEEEEEEeCCCCcccccCcEEEEEEEEecccchhhhHHHHHHHHHHHHHHHH
Confidence 367999999999877 899999999999998875332 2445566666666
Q ss_pred hccc--HHHHHHHHHHhcc-----CCCCCCCCceeecccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCCCCC
Q 006037 182 FDVG--KKAIEHIASYVSI-----WPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQ 254 (663)
Q Consensus 182 F~~g--~~~LE~a~~~I~~-----WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~P~ 254 (663)
...+ ...||+.++.-.. |..|..+. .. ... .........+. .+.
T Consensus 105 ~~~~~~~~~le~~~e~~~~~~~~~~~~~~~~~----------------~~---~~~----~~~~~~~~~~~------~~~ 155 (280)
T PF09804_consen 105 LKDPGDYSPLEAYWEKNKADENSSSSSPPDSH----------------SR---NRS----LSDATALIPPD------PPL 155 (280)
T ss_pred HhCCCcchHHHHHHHHhcccccccccCCcccc----------------cc---ccc----cccccccCCCc------cCC
Confidence 6443 3678887654432 22221000 00 000 00000000000 011
Q ss_pred ccccccc-hhhhhHhhhHHHHHHHHHHHhCCcEEEECCCh-hHHHHHHHHHHHhhcCCCCCC---------ccccccccc
Q 006037 255 GLFHDSD-LFGTFRGLLLQLWVLWELLLIGEPILVIAPTP-PQCCEAVASLVSLIAPLLCSI---------DFRPYFTIH 323 (663)
Q Consensus 255 ~~~~~~~-lf~~f~~~l~~L~~LWEllLt~epIlVia~sP-~~~S~aVlaL~SLI~PL~y~g---------d~RPYFTIh 323 (663)
...|.+. |-..+..+-+.|-.||++.|+.++|||+++-| ..||..|.++. +++=++... ..||.|+|.
T Consensus 156 ~~~Hp~~~Lp~~l~~fGPlIF~L~K~aLLRKRILi~~~~pv~~~c~~vY~ls-~Ls~ip~~~~~~~~~~~~~~~Plf~Ig 234 (280)
T PF09804_consen 156 SPYHPAGSLPQLLDTFGPLIFPLWKAALLRKRILIFSPPPVEVACSFVYCLS-LLSSIPQSLSGSLPPELQRSQPLFNIG 234 (280)
T ss_pred CCCCHHHHHHHHHHHhCcHHHHHHHHHhhcCcEEEecCCChHHHHHHHHHHH-hhccCCccccccCCcccccccceeEEe
Confidence 1122211 11122223577899999999999999998776 77777775544 333344332 379999987
Q ss_pred CcchhhhhcccCCCCCCCeEEecchHHHHHhhcCCCeEEEcCCCC
Q 006037 324 DPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSPA 368 (663)
Q Consensus 324 D~dF~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~~ 368 (663)
=.|-..+.+.. ..++|.-+|--.|+..-+-|+..|.+....
T Consensus 235 v~Di~~L~~~~----~~g~IAcTtD~IL~~K~~LYDv~V~l~~~~ 275 (280)
T PF09804_consen 235 VHDIDYLESEV----KAGWIACTTDEILLEKPELYDVLVDLPPNS 275 (280)
T ss_pred ecchHHHhhcc----CCcEEEEccHHHHhcCccceEEEEECCCCc
Confidence 77776665432 128999999999998889999999997653
No 9
>KOG3569 consensus RAS signaling inhibitor ST5 [Signal transduction mechanisms]
Probab=99.14 E-value=2.9e-09 Score=113.31 Aligned_cols=252 Identities=18% Similarity=0.272 Sum_probs=180.6
Q ss_pred ChhhhHhHhheeEEEEeeCC----CCccceeeCCCCCCChhhhhhcccccCCCccccccCcccCCeeEEEEEecCCCCCC
Q 006037 18 DPERMQRWVVAFCTIRFDLE----QGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLP 93 (663)
Q Consensus 18 ~~~~~~~Wv~~icVV~FDle----~Gq~vE~~YP~~~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~ 93 (663)
.|+.-..-..++|+|..--. .-|.|.++||++.-.++-.+.|.--||||.+--.. -..-+--.|+|=+.+.
T Consensus 6 ~~~~~~~lfe~f~evs~pk~~~~~~~P~v~~QFP~d~~dee~lkaipqFCFP~~~e~~~-vs~~~~q~FsFvLTd~---- 80 (425)
T KOG3569|consen 6 ERQGVRTLFEYFVEVSLPKKPGNTYLPEVTYQFPPDFQDEEILKAIPQFCFPDAVEWLP-VSEYGSQTFSFVLTDE---- 80 (425)
T ss_pred hccCcccceeEEEEEecCCCCCCccCccchhhCCCccccHHHHhhchhccCCccccccc-ccccccceEEEEEEcC----
Confidence 44555566778899887755 44789999999877776788999999999852100 0012224688877653
Q ss_pred CCCCCCccccccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCCCccCcceeeEEEEeeCCCchhhHHHH
Q 006037 94 QGNVTPSEITEINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPL 173 (663)
Q Consensus 94 ~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~FRQ~kD~svkRGy~QKSlVIlS~lPy~~lF~~l 173 (663)
++..=|||+ | ++ +..++.+||||++|.+++|..+
T Consensus 81 -------------------------------------dg~rrFGfC--R------L~-~G~~~c~CilS~l~wF~vF~Kl 114 (425)
T KOG3569|consen 81 -------------------------------------DGSRRFGFC--R------LP-SGLPECYCILSRLGWFGVFSKL 114 (425)
T ss_pred -------------------------------------CCceeeeeE--e------cC-CCCCeEEEEeeCCChHHHHHHH
Confidence 234558888 3 33 3388999999999999999999
Q ss_pred HHHhchhhhcccHHHHHHHHHHhccCCCCCCCCceeecccc-eeEEEeCCCCCCCCCccCccccccccccCCCCCCCCCC
Q 006037 174 LQIMGPLYFDVGKKAIEHIASYVSIWPSPVPGKLMELPIGN-AMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSI 252 (663)
Q Consensus 174 L~~i~p~yF~~g~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg-~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~ 252 (663)
|..++..-=..-+..+|-....+-.-|-|.||+++.|-... ..-..-||... ++
T Consensus 115 Ln~v~~~~~~~q~~~v~~~l~~l~~~p~P~pg~tv~l~~~~~~~~~e~ipd~r------------------~L------- 169 (425)
T KOG3569|consen 115 LNEVEDRRGISQEADVEPFLRSLYEAPFPAPGKTVKLKVFSPGSGTEVIPDTR------------------PL------- 169 (425)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhcCCCCCCCCeEEEEecCCCCceEECcCCC------------------CC-------
Confidence 99887654333345566666666677999999988875432 11112233221 11
Q ss_pred CCccccccchhhhhHhh-hHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhh
Q 006037 253 PQGLFHDSDLFGTFRGL-LLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLN 331 (663)
Q Consensus 253 P~~~~~~~~lf~~f~~~-l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYFTIhD~dF~~~~ 331 (663)
| +.-...|+-..|..+ ..|+..|+-.+|.+++||++|.--+..|..+.|.++|+.|......|.|-+.-|--|+ .
T Consensus 170 p-S~~E~~~f~elf~als~~qml~ifASlL~ERRIifia~KLStLssCiHa~~ALLYPm~WqH~yIPvLPpsLlD~---v 245 (425)
T KOG3569|consen 170 P-SILEHVDFTELFVALSVRQMLQIFASLLLERRIIFIASKLSTLSSCIHAVAALLYPMSWQHTYIPVLPPSLLDY---V 245 (425)
T ss_pred C-CcccccCHHHHHhhcCHHHHHHHHHHHHhhceeEeeccchhHHHHHHHHHHHHhhhhhhheeeeccCCHHHHhH---h
Confidence 1 112234554555443 6889999999999999999999999999999999999999999999999998887555 2
Q ss_pred cccCCCCCCCeEEecchHHHHHh
Q 006037 332 SLQEGDTFPPMVLGVTNLFFLKA 354 (663)
Q Consensus 332 ~~~~~~~~p~~IlGVTNPfF~k~ 354 (663)
-+|.|++|||---+.++.
T Consensus 246 -----CaPmPyLIGv~~s~lerv 263 (425)
T KOG3569|consen 246 -----CAPMPYLIGVHSSLLERV 263 (425)
T ss_pred -----cCCcceeecchHHHHHHH
Confidence 268899999999888754
No 10
>KOG4704 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=8e-05 Score=79.11 Aligned_cols=266 Identities=19% Similarity=0.178 Sum_probs=159.4
Q ss_pred hheeEEEEeeCCCCccceeeCCCCCCChhhhhhcccccCCCccccccCcccCCeeEEEEEecCCCCCCCCCCCCcccccc
Q 006037 26 VVAFCTIRFDLEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEITEI 105 (663)
Q Consensus 26 v~~icVV~FDle~Gq~vE~~YP~~~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~~~ 105 (663)
|.||.+.+||-..|-.||.+||.+. +.++|-|.+||-|.|- -..|++| ||+.+.-.. +
T Consensus 3 i~~i~l~~fd~k~g~~Vew~~p~di----dlegIEfks~psGihe-----~~~d~I~-Fr~~~~l~~--~---------- 60 (431)
T KOG4704|consen 3 IQAIVLATFDAKEGYNVEWYYPGDI----DLEGIEFKSFPSGIHE-----LDNDTIF-FRFQDQLCL--S---------- 60 (431)
T ss_pred eeEEEeeeeccccCceEEEeccccc----cccceeeecccccccc-----ccCceEE-EEecchhhh--h----------
Confidence 5799999999999999999999995 5678999999999763 3456777 687653100 0
Q ss_pred ccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeee------ecCCCccCccee-eEEEEeeC--CCchhhHHHHHHH
Q 006037 106 NDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQ------RHDERLKRGGEQ-KSLVILSH--GPFSSVFRPLLQI 176 (663)
Q Consensus 106 ~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~FRQ------~kD~svkRGy~Q-KSlVIlS~--lPy~~lF~~lL~~ 176 (663)
...+-..+-||-.+|-| -.|.+.-||-+| +|+-|+.- .-...+.+.+.+-
T Consensus 61 ---------------------~~~k~~~~~~~~~~F~~~~f~il~~d~~~~r~~vkm~s~g~~i~~~~~l~~~k~hF~e~ 119 (431)
T KOG4704|consen 61 ---------------------VFSKLQHPSFERSAFFTSVFLILSDDINFGRAVVKMGSTGLYIANGLSLATLKYHFGED 119 (431)
T ss_pred ---------------------hhhcccCcccccchHhhhhhhhccccchhhhhhheecceEEEeccchhHHHHHHHHHHH
Confidence 01112345577777777 468889999444 45554443 3455556666776
Q ss_pred hchhhhccc-HHHHHHHHHHhccCC--CCCCCCceeecccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCCCC
Q 006037 177 MGPLYFDVG-KKAIEHIASYVSIWP--SPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIP 253 (663)
Q Consensus 177 i~p~yF~~g-~~~LE~a~~~I~~WP--~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~P 253 (663)
+...|-..+ ..-|++...+...-- .+..++...+ ++- ++ ++.+. -+.+.....+
T Consensus 120 ~~h~ya~~~~~Shl~s~~rD~~k~l~~~~~~~e~~~~-~~~------l~---------s~~~~-------~~~~~~~~h~ 176 (431)
T KOG4704|consen 120 ASHTYASEKCTSHLLSDSRDFFKSLQTSAVNLEFDSL-FEK------LQ---------SNKFA-------ILGANSKEHS 176 (431)
T ss_pred HHHHHhcccchHHHHHHHHHhhhhhhccccccccCch-hhh------cc---------cceEE-------ecCchhhhhh
Confidence 666665443 355666665554321 1111110000 000 00 00000 0000000001
Q ss_pred Cccccccchhhhh-HhhhHHHHHHHHHHHhCCcEEEECCC-h--hHHHHHHHHHHHhhcCCCC------CCccccccccc
Q 006037 254 QGLFHDSDLFGTF-RGLLLQLWVLWELLLIGEPILVIAPT-P--PQCCEAVASLVSLIAPLLC------SIDFRPYFTIH 323 (663)
Q Consensus 254 ~~~~~~~~lf~~f-~~~l~~L~~LWEllLt~epIlVia~s-P--~~~S~aVlaL~SLI~PL~y------~gd~RPYFTIh 323 (663)
+ .--..| ..+-+.+.-||+..|+.++||+++|- + ..|-.+|.+++++ +=++- -.|-.|+|++.
T Consensus 177 ~------~y~~~~~~~lGp~i~~LwKfaLlrkRILi~sp~~~~~~~c~~~iyc~~~i-~~~s~~~Ig~~~sd~kPff~V~ 249 (431)
T KOG4704|consen 177 Q------SYATILLDHLGPAIYCLWKFALLRKRILIISPHDDQLYSCIDMIYCLSSI-KRSSDASIGILLSDLKPFFSVG 249 (431)
T ss_pred H------HHHHHHHHHhccHHHHHHHHHHHhheEEEEeCCCCceeehhhhHHHHHhh-hcCCccccCcccccCCceEEEE
Confidence 1 111112 22346799999999999999999987 3 2343555555443 22222 24779999998
Q ss_pred CcchhhhhcccCCCCCCCeEEecchHHHHHhhcCCCeEEEcCCC
Q 006037 324 DPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALRKIPHIVSVGSP 367 (663)
Q Consensus 324 D~dF~~~~~~~~~~~~p~~IlGVTNPfF~k~~~~WPhil~l~~~ 367 (663)
-.|-.-+-+. ...-++|.-+|--.++..-+-.+.++...+.
T Consensus 250 ~adi~~les~---~~e~gyVAcTte~Ill~K~elYD~~v~~~~~ 290 (431)
T KOG4704|consen 250 LADISTLESN---DLEEGYVACTTETILLSKSELYDLAVYWPDN 290 (431)
T ss_pred cccccchhhc---ccccceEEechHHHHhcchhhheeEEeCCCC
Confidence 7666544332 3446799999999999988888888887654
No 11
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=97.94 E-value=3.5e-05 Score=89.24 Aligned_cols=81 Identities=19% Similarity=0.244 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeEEecchH
Q 006037 270 LLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNL 349 (663)
Q Consensus 270 l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYFTIhD~dF~~~~~~~~~~~~p~~IlGVTNP 349 (663)
+.--...|-+++++..||+-+.+-..+|-.|+|.+.||.||.|--...|.+.-.-+.=..+. -+|.++||||-.-
T Consensus 306 vd~cL~VlT~imlE~Kvv~QSRdYNAlSMsvmafVamlYPLEYMFPVIPLLPtcm~sAEQLL-----LAPTPfiIGVPaS 380 (1588)
T KOG3570|consen 306 VDACLQVLTCILLEHKVVLQSRDYNALSMSVMAFVAMIYPLEYMFPVIPLLPTCMASAEQLL-----LAPTPYIIGVPAS 380 (1588)
T ss_pred HHHHHHHHHHHHHhceeeeeeccccHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHh-----cCCCCeEeccchH
Confidence 34456789999999999999999999999999999999999999999999876644333332 4788999999999
Q ss_pred HHHHhh
Q 006037 350 FFLKAL 355 (663)
Q Consensus 350 fF~k~~ 355 (663)
||.-..
T Consensus 381 Ff~ykk 386 (1588)
T KOG3570|consen 381 FFLYKL 386 (1588)
T ss_pred Hhhhhh
Confidence 997554
No 12
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=96.75 E-value=0.012 Score=70.07 Aligned_cols=181 Identities=14% Similarity=0.150 Sum_probs=112.8
Q ss_pred EEEEeeeeecCCCccCcceeeEEEEeeCCCchhhHHHHHHHhchhhhcccHHHHHHHHHHhccC--CCCCCCCceeeccc
Q 006037 136 YGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGKKAIEHIASYVSIW--PSPVPGKLMELPIG 213 (663)
Q Consensus 136 YG~v~FRQ~kD~svkRGy~QKSlVIlS~lPy~~lF~~lL~~i~p~yF~~g~~~LE~a~~~I~~W--P~p~pg~~l~Lp~l 213 (663)
|.||+---..|+ .+-.|.-+|||++|+..-+.-|+.+|.-|...|-...-..++.+..+|... -.|..|+..... +
T Consensus 85 ~~~~ls~~e~~~-~t~~~~~~~ivlis~~~~~~~fk~~l~~i~~~~~~~~~~~~~~li~~l~~~l~~~~s~~~~~~~t-l 162 (1732)
T KOG1090|consen 85 IAYVLSTWEEDE-KTLNFKAVSIVLISQNFHPKAFKEILLEISNDLRTPEFSSSSELIRFLTYELVEEGSTIEIRTKT-L 162 (1732)
T ss_pred EEEEeehhhhhh-hhhcccceEEEEEecccCHHHHHHHHHHHHHHhcCcccccHHHHHHHhheEEeecCCCCceEEEE-e
Confidence 344433333332 445599999999999999999999998776665443333455555555321 122222211111 1
Q ss_pred ceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCCCCCccccccchhhhhHh-hhHHHHHHHHHHHhCCcEEEECCC
Q 006037 214 NAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRG-LLLQLWVLWELLLIGEPILVIAPT 292 (663)
Q Consensus 214 g~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~-~l~~L~~LWEllLt~epIlVia~s 292 (663)
|+-+.+. ..|.+ |++ .-|.--+|.. -+.++..|..+||+.-+||+.+.+
T Consensus 163 ~~~~~~~---------------------l~p~~------p~t---g~~v~~lfk~lg~qnvi~ii~a~lsd~ri~~~s~~ 212 (1732)
T KOG1090|consen 163 HVELGFE---------------------LIPIS------PVT---GKDVAMLFKMLGFQNVIKIIHALLSDCRIVLASSS 212 (1732)
T ss_pred ecccCce---------------------eeecC------CCC---CccHHHHHHHhhhhHHHHHHHHHHhcceEeeehhH
Confidence 1000000 01111 111 1121123332 268899999999999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeEEecchHHHHHhhc
Q 006037 293 PPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLFFLKALR 356 (663)
Q Consensus 293 P~~~S~aVlaL~SLI~PL~y~gd~RPYFTIhD~dF~~~~~~~~~~~~p~~IlGVTNPfF~k~~~ 356 (663)
-=..|..+-|++||+.|+.|-..|.|.+. ...+|+. .+|.|+|+||-.-|-..--+
T Consensus 213 ~~~ls~~~~ai~sllypf~y~h~~v~ilp---~~l~evl-----~sptpfl~gv~s~~~t~~~d 268 (1732)
T KOG1090|consen 213 LMRLSRCQNAILSLLYPFEYVHSCVTILP---DSLAEVL-----ESPTPFLIGVLSEFVTSFGD 268 (1732)
T ss_pred HHHHHHHHHHHHHHhcchheeeeeeeecc---cHHHHHh-----cCCCceeehhhHHHhhhcCC
Confidence 88889999999999999999888776654 3445555 47889999999987655443
No 13
>KOG2432 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.002 Score=70.96 Aligned_cols=114 Identities=15% Similarity=0.054 Sum_probs=92.2
Q ss_pred HHHHHHhcCCCChH----HHHHHHHHHHHHHHHHHHHHHhhccHHHHh-ccCCcchhhhHHHHHHHHHHHHHHHHhccCC
Q 006037 535 DLYRRFLKGPNFMP----WFQRRRAAAEQEQHRLWRQARMRTDIQQLI-AKMSELESVDTFNAVERHLIQEIQLQQSGCA 609 (663)
Q Consensus 535 ~LYrrF~~spnF~~----Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~-~~~~eve~vDl~~~l~~~l~~e~~~~~~~~~ 609 (663)
-.|++|-.|-||.+ ||-++...+..++.-+|-.++|.+|+.--+ .-+.-+|+||++++|...|. .+
T Consensus 213 ~e~~~~~ts~~~g~vhe~dLf~~~r~v~~QL~tLWELvL~gEPilivaptPs~~Se~V~~lv~liaPL~-----~c---- 283 (565)
T KOG2432|consen 213 VELRDTNTSVNLGGVHEIDLFRSSRDVNLQLKTLWELVLLGEPILIVAPTPSHCSEIVQLLVRLIAPLI-----YC---- 283 (565)
T ss_pred eeeccCccccccCCcchhHHHHhhHHHHHHHHHHHHHHHhCCCeEEecCCchhhHHHHHHHHHHhhcce-----eC----
Confidence 34999999999999 999999999999999999999999985433 45678999999999998876 22
Q ss_pred CCChHHHHHHHHHHHHHHHhcCcHH-HHHHHhcCchhhhhccCCCCccCC
Q 006037 610 ATDSAEICQKLKGDLLAVFNVLPKD-VQQLLLFNPERAALLQRTPELTKP 658 (663)
Q Consensus 610 ~~~~~~~~~~l~~~l~~i~~~lp~d-lq~~l~~~~~~~~~~~~~~~~~~~ 658 (663)
++....+.-.-++...+.+...+| +.++..+||-=+..|+.-|-+.++
T Consensus 284 -~dfRPYFTIHDseF~e~tS~~~sdP~~iLGVTNpFF~K~L~~wPHilrv 332 (565)
T KOG2432|consen 284 -PDFRPYFTIHDSEFREYTSNVDSDPLVILGVTNPFFRKALAHWPHILRV 332 (565)
T ss_pred -CCCCceeeeccHHHHHHHhccCCCCceEEecCCHHHHHHHhcCcceeee
Confidence 233445556666777788888888 889999999988888877765543
No 14
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=94.73 E-value=0.14 Score=60.50 Aligned_cols=271 Identities=17% Similarity=0.171 Sum_probs=153.6
Q ss_pred CChhhhHhHhheeEEEEeeCCCCccce----------------eeCCCCC-CChhhhhhcccccCCCccccccCcccCCe
Q 006037 17 PDPERMQRWVVAFCTIRFDLEQGQLIE----------------DCYPPGC-LTQDEELEVAYSSFPDSVSQHQNRSSIHD 79 (663)
Q Consensus 17 ~~~~~~~~Wv~~icVV~FDle~Gq~vE----------------~~YP~~~-Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~D 79 (663)
.+-+.|.+...|+++..=|++-|-... .-||.++ ..+-++..+|.++.|-+..+.-...|.+
T Consensus 61 ~pde~f~r~~~~f~~~~~dl~~~~~~sr~~g~n~~~~pL~kpla~ypenvpwnPfd~~~~~ml~mP~gl~frtq~~~~E- 139 (1295)
T KOG2080|consen 61 LPDEKFIRLFSCFLLEHQDLLCSKDLSRLMGVNESLLPLSKPLAWYPENVPWNPFDKLDFFMLCMPKGLGFRTQDDVPE- 139 (1295)
T ss_pred CccHHHHHHHHHHHHhhhhccccccchhhhccCcccccccchhhcCccCCCCCcccccceeeeccccccceeccCCCCc-
Confidence 445788888888888777777665432 2388876 6777899999999999976652222222
Q ss_pred eEE-EEEecCCCCCCCCCCCC--------cc------------ccc-cccccCcchhHHHHHhhhccCCCCCCCCceE--
Q 006037 80 CIF-FFRFQRHKNLPQGNVTP--------SE------------ITE-INDKITSSELTEEKLLKRSKSFSSSKGSRYF-- 135 (663)
Q Consensus 80 t~F-~Frir~~~~~~~~~~~~--------~~------------~~~-~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~l-- 135 (663)
-+| +|-+.+..+.+....+- ++ .++ ++.-...|++.-+ .+. +. -..++..+
T Consensus 140 p~FhSfiitredG~r~ygf~l~fyeevrsk~ic~am~tl~~m~~te~~nsl~~~s~sd~~-l~s---sl-drsep~~v~v 214 (1295)
T KOG2080|consen 140 PQFHSFIITREDGSRTYGFDLTFYEEVRSKQICGAMQTLYSMHNTEIYNSLEALSDSDKD-LTS---SL-DRSEPTEVVV 214 (1295)
T ss_pred hhhheeeEEcccCccccCcceeechhhchhhhhhHHHHHHHHHHHHhhhhhhcCccchhh-ccC---cc-ccCCCceeee
Confidence 233 24444433333221100 00 011 1221122222111 111 11 11122222
Q ss_pred EE--EEeeeeecCCCccCcceeeEEEEeeCCCchhhHHHHHHHhchhhhcccH--HHHHHHHHHhc-cCCCCCCCCceee
Q 006037 136 YG--YVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFDVGK--KAIEHIASYVS-IWPSPVPGKLMEL 210 (663)
Q Consensus 136 YG--~v~FRQ~kD~svkRGy~QKSlVIlS~lPy~~lF~~lL~~i~p~yF~~g~--~~LE~a~~~I~-~WP~p~pg~~l~L 210 (663)
-| +.+ +|.+-.-=|+-|||++++.+||-.--+.+|..+...--..+. -.||....||. .-|-|.||..+.
T Consensus 215 ~g~~~~~----ydi~rd~lyvaKsi~li~~lp~~~A~~~fL~~lyr~~trq~~~plpLEsyi~Nilyev~lp~pgrsl~- 289 (1295)
T KOG2080|consen 215 LGRVKNS----YDISRDTLYVAKSICLITPLPFMSACSEFLSQLYRAVTRQQPPPLPLESYIYNILYEVPLPPPGRSLK- 289 (1295)
T ss_pred echhhhc----cccccchHHhhhheeecccchHHHHHHHHHHHHHhccCCCCCCCcCHHHHHhhhheecccCCCCceee-
Confidence 11 222 344444569999999999999988877777766665554443 35777766664 567777777432
Q ss_pred cccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCCCCCccccccchhhhhHhhhHHHHHHHHHHHhCCcEEEEC
Q 006037 211 PIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLFGTFRGLLLQLWVLWELLLIGEPILVIA 290 (663)
Q Consensus 211 p~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~P~~~~~~~~lf~~f~~~l~~L~~LWEllLt~epIlVia 290 (663)
|..+... +. ...++ ..-.|+.+|-.-.+|..+ -+.++..|++|||+.--||.++
T Consensus 290 --------vy~~~~~-------ii------~q~~~---a~elpL~dfplR~~F~~l--gVenviql~tCvLle~qill~s 343 (1295)
T KOG2080|consen 290 --------VYGVYDP-------II------CQRPF---ADELPLDDFPLREYFELL--GVENVIQLFTCVLLENQILLYS 343 (1295)
T ss_pred --------EEecCCc-------cc------ccCCC---CcccccccHhHHHHHHHh--cchHHHHHHHHHHhhhHHHhhh
Confidence 2222110 00 00000 111122222111122111 2788999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhcCCCCCCcccccccccC
Q 006037 291 PTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHD 324 (663)
Q Consensus 291 ~sP~~~S~aVlaL~SLI~PL~y~gd~RPYFTIhD 324 (663)
.+-...--..-++.+|+.|+.....|-|.+.-.-
T Consensus 344 ~dyqrlm~v~e~itsllfpf~w~hvy~pilpa~l 377 (1295)
T KOG2080|consen 344 QDYQRLMTVAECITSLLFPFQWQHVYVPILPASL 377 (1295)
T ss_pred hhHHHHHHHHhhhhhhccccccccccccccHHHH
Confidence 9977766666688999999999999988875543
No 15
>smart00800 uDENN Domain always found upstream of DENN domain, found in a variety of signalling proteins. The uDENN domain is part of the tripartite DENN domain. It is always found upstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=90.17 E-value=0.98 Score=39.61 Aligned_cols=65 Identities=20% Similarity=0.231 Sum_probs=42.5
Q ss_pred hHhheeEEEEeeCCCC-------ccceeeCCCCCC-ChhhhhhcccccCCCccccccCcccCCeeEEEEEecC
Q 006037 24 RWVVAFCTIRFDLEQG-------QLIEDCYPPGCL-TQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQR 88 (663)
Q Consensus 24 ~Wv~~icVV~FDle~G-------q~vE~~YP~~~L-s~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~ 88 (663)
+-+.+++||+.|.+.+ +.|-..||+... ......+|+..+||++..............|+|-+.+
T Consensus 3 rl~d~f~vvg~~~~~~~~~~~~~p~il~~yP~~~~~~~~~~~~i~~FCfP~G~~~~~~~~~~~~~~f~FvLT~ 75 (89)
T smart00800 3 RLFDYFVVVGLDSDTGPLGRSYKPEILQRYPEKDEEDFPLPDSIPLFCFPEGLLFVTQKSSKDPQFFSFVLTD 75 (89)
T ss_pred cceeEEEEEeCCCCCCCcCcccceEEEeECCCCCCccCCCccCCCeeECCCCeEeecccCCCCCcEEEEEEEC
Confidence 4567899999988743 567788998532 2234567888899999654311122333667777754
No 16
>KOG2127 consensus Calmodulin-binding protein CRAG, contains DENN domain [Signal transduction mechanisms]
Probab=90.11 E-value=1.1 Score=55.05 Aligned_cols=76 Identities=20% Similarity=0.311 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeEEecchHH
Q 006037 271 LQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLF 350 (663)
Q Consensus 271 ~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYFTIhD~dF~~~~~~~~~~~~p~~IlGVTNPf 350 (663)
.++..|-+++||...|+|-+..|..|...+=|++|++.||..-+.|.|--... |+++. .+|-++|+||---|
T Consensus 33 e~~l~~ll~~lteqkil~hslr~~~lt~v~e~~~s~~fp~~wq~pyip~~pl~---la~vl-----~aP~pf~~g~~s~~ 104 (1020)
T KOG2127|consen 33 ENVLQLLLLALTEQKILIHSLRPALLTAVAEAFVALLFPFHWQCPYIPLCPLG---LADVL-----HAPLPFLMGVDSRY 104 (1020)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcccceecCCccccccch---hcccc-----cCCcccccCCChhh
Confidence 66888999999999999999999999999999999999999887666655444 34333 46778999999999
Q ss_pred HHHh
Q 006037 351 FLKA 354 (663)
Q Consensus 351 F~k~ 354 (663)
|.-.
T Consensus 105 f~~~ 108 (1020)
T KOG2127|consen 105 FELY 108 (1020)
T ss_pred hhcc
Confidence 9887
No 17
>PF03456 uDENN: uDENN domain; InterPro: IPR005113 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form an all beta domain [].; PDB: 3TW8_A.
Probab=76.99 E-value=4.1 Score=33.48 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=28.9
Q ss_pred ccceeeCCCCC--CChhhhhhcccccCCCccccccCcccCCeeEEEEEecCC
Q 006037 40 QLIEDCYPPGC--LTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRH 89 (663)
Q Consensus 40 q~vE~~YP~~~--Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~ 89 (663)
+.|-..||+.. -......+|+..+||++....... ....+.|.|-+.+.
T Consensus 2 p~il~~yP~~d~~~~~~~~~~i~~FCfP~G~~~~~~~-~~~~~~f~FvLT~~ 52 (65)
T PF03456_consen 2 PEILDRYPPSDHEPDPPLPPSIPMFCFPDGIEISSQS-RPPPQFFSFVLTDE 52 (65)
T ss_dssp -EEEEEEST--T---HHHHHHHHHHHS-S-CCCCGGG--GSSCEEEEEEE-T
T ss_pred CEEEEECCCCccccCCCChhhCCccCCCCCcEeeccc-cCCCeEEEEEEECC
Confidence 45778899954 345567889999999997654221 24457888887653
No 18
>PF03455 dDENN: dDENN domain; InterPro: IPR005112 This region is always found associated with IPR001194 from INTERPRO. It is predicted to form a globular domain that is completely alpha helical []. Although not statistically supported it has been suggested that this domain may be similar to members of the Rho/Rac/Cdc42 GEF family [].; PDB: 3TW8_A.
Probab=61.39 E-value=7.7 Score=32.11 Aligned_cols=66 Identities=23% Similarity=0.419 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCC
Q 006037 465 EILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGP 544 (663)
Q Consensus 465 ~iLRRHF~eLT~~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~sp 544 (663)
..||.-|+..=.+.|.=...|+...... +. .-|+.+.|+++... +-..+|+.|++|-
T Consensus 3 ~~Ir~~Fl~~f~~ll~~Yr~~~~~~~~~--------~~--~~F~~~~Fl~~~~~-------------~~~~Fl~~f~~TQ 59 (68)
T PF03455_consen 3 DQIREAFLRFFVSLLGNYREYLIYDRQS--------PR--VIFDKEAFLKSRPK-------------ESRPFLKAFLETQ 59 (68)
T ss_dssp THHHHHHHHHHHHHHGGGGGG-----------------------HHHHS--SSH-------------HHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCC--------CC--ceeccHHHHhcCCh-------------hHhHHHHHHHHHH
Confidence 3578888877777777777777554221 11 57999999998211 1248999999999
Q ss_pred CChHHHHHH
Q 006037 545 NFMPWFQRR 553 (663)
Q Consensus 545 nF~~Wl~~r 553 (663)
.|..|++.|
T Consensus 60 ~F~~Fi~~R 68 (68)
T PF03455_consen 60 MFEQFIEER 68 (68)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHhcC
Confidence 999999876
No 19
>smart00801 dDENN Domain always found downstream of DENN domain, found in a variety of signalling proteins. The dDENN domain is part of the tripartite DENN domain. It is always found downstream of the DENN domain itself, which is found in a variety of signalling proteins involved in Rab-mediated processes or regulation of MAPKs signalling pathways. The DENN domain is always encircled on both sides by more divergent domains, called uDENN (for upstream DENN) and dDENN (for downstream DENN). The function of the DENN domain remains to date unclear, although it appears to represent a good candidate for a GTP/GDP exchange activity.
Probab=58.92 E-value=14 Score=30.62 Aligned_cols=67 Identities=21% Similarity=0.422 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCCC
Q 006037 466 ILRRHFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPN 545 (663)
Q Consensus 466 iLRRHF~eLT~~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~spn 545 (663)
.||.-|+..=.+.+.-...|+..+ .+.+....-|+.+.||++.+. +...+|+.|+.|-.
T Consensus 3 ~Ir~aFl~~f~~l~~~Y~~~l~~~--------~~~~~~~~~F~~~~Fl~~~~~-------------~~~~Fl~~~~~TQ~ 61 (69)
T smart00801 3 EIREAFLRFFVNLFGGYRNFLREL--------RKEPGPVITFDKESFLKSRPS-------------SERPFLSKFLETQM 61 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HhCCCCCceeCHHHHHHhCCc-------------hhhHHHHHHHHHhh
Confidence 466666666445454455555421 112234568999999997322 22579999999999
Q ss_pred ChHHHHHH
Q 006037 546 FMPWFQRR 553 (663)
Q Consensus 546 F~~Wl~~r 553 (663)
|...++.|
T Consensus 62 F~~Fi~~r 69 (69)
T smart00801 62 FSQFIEER 69 (69)
T ss_pred HHHHHhcC
Confidence 98887654
No 20
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=44.04 E-value=49 Score=32.49 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=60.1
Q ss_pred HHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeEEecchHH----HHHh
Q 006037 279 LLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGVTNLF----FLKA 354 (663)
Q Consensus 279 llLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYFTIhD~dF~~~~~~~~~~~~p~~IlGVTNPf----F~k~ 354 (663)
+---+.+|.++|.++..+.++...|..--..+...|-+-||| ...+-.++.+.-+...+-=+++|.-.|- ..+.
T Consensus 44 ~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f--~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~ 121 (172)
T PF03808_consen 44 AEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF--DEEEEEAIINRINASGPDIVFVGLGAPKQERWIARH 121 (172)
T ss_pred HHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC--ChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHH
Confidence 334468999999999999999999999999999999999999 3334444443222223334789999993 3333
Q ss_pred hcCCC--eEEEcCCC
Q 006037 355 LRKIP--HIVSVGSP 367 (663)
Q Consensus 355 ~~~WP--hil~l~~~ 367 (663)
.+..+ .++.+|..
T Consensus 122 ~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 122 RQRLPAGVIIGVGGA 136 (172)
T ss_pred HHHCCCCEEEEECch
Confidence 34444 45666643
No 21
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=41.24 E-value=29 Score=30.77 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHHHHHHHhcCcHHHHHH
Q 006037 610 ATDSAEICQKLKGDLLAVFNVLPKDVQQL 638 (663)
Q Consensus 610 ~~~~~~~~~~l~~~l~~i~~~lp~dlq~~ 638 (663)
....+++.++|+..|+. ...||.||+.+
T Consensus 23 flt~~Ell~~Lk~~L~~-~~~LP~dL~~~ 50 (83)
T PF12095_consen 23 FLTPEELLEKLKEWLQN-QDDLPPDLAKF 50 (83)
T ss_dssp EE-HHHHHHHHHHHHHH-TTTS-HHHHH-
T ss_pred cCCHHHHHHHHHHHHHc-CCCCCHHHHhC
Confidence 34678999999999999 99999999975
No 22
>TIGR03209 P21_Cbot clostridium toxin-associated regulator BotR. Similarly, tetanus toxin production of Clostridium tetani is regulated by TetR which is a very close relative of BotR. Both BotR and TetR are members of the TIGR02937 subfamily of sigma-70 RNA polymerase sigma factors. Functional complementation experiments have been done for botR and tetR in highly transformable strain of Clostridium perfringens host cells to assess functional interchangeability of sigma factors and it has been confirmed that they are interchangeable in vivo.
Probab=38.91 E-value=96 Score=28.67 Aligned_cols=22 Identities=14% Similarity=0.452 Sum_probs=18.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHhc
Q 006037 620 LKGDLLAVFNVLPKDVQQLLLF 641 (663)
Q Consensus 620 l~~~l~~i~~~lp~dlq~~l~~ 641 (663)
....|..++..||++-++|+.+
T Consensus 97 ~~~~l~~~l~~Lp~~~r~v~~l 118 (142)
T TIGR03209 97 LEFEFNDLISILPNKQKKIIYM 118 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 4556889999999999999765
No 23
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=35.52 E-value=1.3e+02 Score=29.58 Aligned_cols=79 Identities=15% Similarity=0.222 Sum_probs=57.0
Q ss_pred CCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcc--hhhhhcccCCCCCCC-eEEecchHHHH----Hhh
Q 006037 283 GEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQ--FAHLNSLQEGDTFPP-MVLGVTNLFFL----KAL 355 (663)
Q Consensus 283 ~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYFTIhD~d--F~~~~~~~~~~~~p~-~IlGVTNPfF~----k~~ 355 (663)
+.+|.++|.+|..+..++..+...-..+...|.+-|||.--+.+ ..+++ ...|- +++|.-.|--+ +..
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~-----~~~pdiv~vglG~PkQE~~~~~~~ 120 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERIN-----ASGADILFVGLGAPKQELWIARHK 120 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHH-----HcCCCEEEEECCCCHHHHHHHHHH
Confidence 78999999999999999999999988899899899999744422 22222 23344 78999999433 333
Q ss_pred cC--CCeEEEcCC
Q 006037 356 RK--IPHIVSVGS 366 (663)
Q Consensus 356 ~~--WPhil~l~~ 366 (663)
++ -+.++.+|.
T Consensus 121 ~~l~~~v~~~vG~ 133 (171)
T cd06533 121 DRLPVPVAIGVGG 133 (171)
T ss_pred HHCCCCEEEEece
Confidence 33 355666664
No 24
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=33.73 E-value=2e+02 Score=26.57 Aligned_cols=49 Identities=12% Similarity=0.256 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHHHH
Q 006037 535 DLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQE 600 (663)
Q Consensus 535 ~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~~~eve~vDl~~~l~~~l~~e 600 (663)
.=|..||..|+-++| |+.+-+.+++..-+ -.|-+||+--||--++|+..
T Consensus 10 aRye~~F~~~~iD~w------e~rr~mN~l~~~Dl-----------VP~P~ii~aaLrAcRRvND~ 58 (103)
T cd00923 10 ARYETYFNRPDIDGW------ELRRGLNNLFGYDL-----------VPEPKVIEAALRACRRVNDF 58 (103)
T ss_pred HHHHHHhCCcCccHH------HHHHHHHHHhcccc-----------CCCcHHHHHHHHHHHHhhhH
Confidence 458899999999999 77777777766444 57889999988888887753
No 25
>PF10906 DUF2697: Protein of unknown function (DUF2697); InterPro: IPR020301 This entry contains proteins with no known function.
Probab=31.57 E-value=45 Score=28.53 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=21.3
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHH
Q 006037 536 LYRRFLKGPNFMPWFQRRRAAAEQ 559 (663)
Q Consensus 536 LYrrF~~spnF~~Wl~~r~~~~~~ 559 (663)
||++-+.||+|-.|-++-++-++.
T Consensus 4 Ly~kLl~SpgFhrfVR~Ih~kVN~ 27 (68)
T PF10906_consen 4 LYRKLLDSPGFHRFVRRIHAKVNG 27 (68)
T ss_pred HHHHHHcChhHHHHHHHHHHHHhC
Confidence 899999999999999988877763
No 26
>PRK09644 RNA polymerase sigma factor SigM; Provisional
Probab=28.98 E-value=1.7e+02 Score=27.77 Aligned_cols=26 Identities=19% Similarity=0.355 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHhc
Q 006037 616 ICQKLKGDLLAVFNVLPKDVQQLLLF 641 (663)
Q Consensus 616 ~~~~l~~~l~~i~~~lp~dlq~~l~~ 641 (663)
....+...+..++..||++-++++.+
T Consensus 94 ~~~~~~~~l~~~l~~L~~~~r~v~~l 119 (165)
T PRK09644 94 VAKNSYEKLIQIIHTLPVIEAQAILL 119 (165)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 34456678899999999999999764
No 27
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=25.66 E-value=1.8e+02 Score=31.53 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=29.9
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHhc-cCCCCChHHHHHHHHHHHHHHHhcCc
Q 006037 581 MSELESVDTFNAVERHLIQEIQLQQS-GCAATDSAEICQKLKGDLLAVFNVLP 632 (663)
Q Consensus 581 ~~eve~vDl~~~l~~~l~~e~~~~~~-~~~~~~~~~~~~~l~~~l~~i~~~lp 632 (663)
-++-|++||---|++.|.+ +..... ..+..+..+-.+..+..|++++++..
T Consensus 101 ASDQEVLdMh~FlreAL~r-LrqeePq~lqa~V~td~F~E~k~rLQ~L~scIt 152 (324)
T PF12126_consen 101 ASDQEVLDMHGFLREALER-LRQEEPQNLQAAVRTDGFDEFKARLQDLVSCIT 152 (324)
T ss_pred cchHHHHHHHHHHHHHHHH-hhhhcCcccccceecccHHHHHHHHHHHHHHHh
Confidence 4889999999999999864 422111 12233444444445555555555544
No 28
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=23.35 E-value=67 Score=25.45 Aligned_cols=40 Identities=30% Similarity=0.414 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006037 533 WLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTD 573 (663)
Q Consensus 533 w~~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d 573 (663)
...|||+++|+..-.+|.. .+..+..+.+..+++-...+|
T Consensus 3 vl~LYR~lLR~~~~~~~~~-~r~~~~~~iR~~Fr~n~~~~d 42 (59)
T PF05347_consen 3 VLSLYRQLLRAARSFPDDS-EREYIRAEIRQEFRKNRNETD 42 (59)
T ss_pred HHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhcCCCCC
Confidence 5789999998875544444 344555566666665554444
No 29
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=23.08 E-value=47 Score=29.30 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=13.0
Q ss_pred cccccCcchhhhhcc
Q 006037 319 YFTIHDPQFAHLNSL 333 (663)
Q Consensus 319 YFTIhD~dF~~~~~~ 333 (663)
=||..|.+|.+|.++
T Consensus 10 RfTe~D~ey~~~~~~ 24 (81)
T PF15320_consen 10 RFTEDDEEYMEYCKR 24 (81)
T ss_pred hccccCHHHHHHHhC
Confidence 389999999999864
No 30
>PRK12537 RNA polymerase sigma factor; Provisional
Probab=21.55 E-value=1.7e+02 Score=28.34 Aligned_cols=127 Identities=13% Similarity=0.124 Sum_probs=59.0
Q ss_pred CCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcC-CCChHHHHHHHHHHHHHHHHHHHHHHhh--------ccHHH
Q 006037 506 PFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKG-PNFMPWFQRRRAAAEQEQHRLWRQARMR--------TDIQQ 576 (663)
Q Consensus 506 pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~s-pnF~~Wl~~r~~~~~~~~~~l~~~a~~~--------~d~~~ 576 (663)
+++-++.+..+.... ...|..||+++-+. =.|..++-.-+.++++-.+..+..+.-. ..+..
T Consensus 7 ~~~~~~l~~~~~~~d---------~~a~~~l~~~~~~~l~~~~~~~~~~~~~AeDivQe~fl~l~~~~~~~~~~~~~~~~ 77 (182)
T PRK12537 7 PFDYEACLLACARGD---------RRALQALYQQESARLLGVARRIVRDRALAEDIVHDAFIKIWTGAASFDPARGSARG 77 (182)
T ss_pred hhhHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHhccccCCcccccHHH
Confidence 355556555554422 23466777665421 1222233333455665555555544311 23566
Q ss_pred HhccCCcchhhhHHHHHHHHHH--HHHHHHhccCCCCChHHHHHHHHHHHHHHHhcCcHHHHHHHhc
Q 006037 577 LIAKMSELESVDTFNAVERHLI--QEIQLQQSGCAATDSAEICQKLKGDLLAVFNVLPKDVQQLLLF 641 (663)
Q Consensus 577 ~~~~~~eve~vDl~~~l~~~l~--~e~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~lp~dlq~~l~~ 641 (663)
|+..-.-=+++|-+-+-++.-. .+...........+.....+.....++..+..||++-++++.+
T Consensus 78 wL~~iarn~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~i~~l 144 (182)
T PRK12537 78 WIYSVTRHLALNVLRDTRREVVLDDDAEETAQTLHEIIDDFDLWANSGKIHRCLEQLEPARRNCILH 144 (182)
T ss_pred HHHHHHHHHHHHHHHhccccCccccchhhhcccccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 7654433344444443321100 0000000000011111123344567889999999999998665
No 31
>PRK11922 RNA polymerase sigma factor; Provisional
Probab=20.86 E-value=2.4e+02 Score=28.70 Aligned_cols=134 Identities=15% Similarity=0.241 Sum_probs=68.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHhcCCCccccccccCCHHHHHHHHhcCCCChHHHHHH---HHHHHHHHHHHHHHHHh---
Q 006037 497 PFVDPPTLPPFNANEFLSSLQARGVGKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRR---RAAAEQEQHRLWRQARM--- 570 (663)
Q Consensus 497 p~~~pp~l~pF~~~~FL~sL~~~g~~~~l~~~~k~~w~~LYrrF~~spnF~~Wl~~r---~~~~~~~~~~l~~~a~~--- 570 (663)
|-..+|.|.+=+.++.+..+...+ ...|..||+++-.. ...+..++ ..++++-.+..+..+..
T Consensus 5 ~~~~~~~~~~~~~~~l~~~~~~gd---------~~a~~~l~~~y~~~--l~~~a~~~~~~~~~AEDlvQE~fi~l~~~~~ 73 (231)
T PRK11922 5 PASRPPPLSAASDRELVARVLAGD---------EAAFEALMRRHNRR--LYRTARAILRNDAEAEDVVQEAYLRAFRALG 73 (231)
T ss_pred CCCCCCCcCcccHHHHHHHHHcCC---------HHHHHHHHHHHHHH--HHHHHHHHhCChhhHHHHHHHHHHHHHHHHH
Confidence 445677788877888777775432 12455665554321 12333322 24444444443333221
Q ss_pred ----hccHHHHhccCCcchhhhHHHHHHHHHHH-HHHHH---h--------ccCCCCChHHHHHHHHHHHHHHHhcCcHH
Q 006037 571 ----RTDIQQLIAKMSELESVDTFNAVERHLIQ-EIQLQ---Q--------SGCAATDSAEICQKLKGDLLAVFNVLPKD 634 (663)
Q Consensus 571 ----~~d~~~~~~~~~eve~vDl~~~l~~~l~~-e~~~~---~--------~~~~~~~~~~~~~~l~~~l~~i~~~lp~d 634 (663)
...+..|+....-=.++|.+-+-+++-.. +.... . .....+......+.+...|..++..||+.
T Consensus 74 ~~~~~~~~~~wL~~iarn~~~d~~Rk~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~~~~l~~~l~~L~~~ 153 (231)
T PRK11922 74 TFRGDASLSTWLSRIVLNEALGRLRRRRRLVNLAEMVMASTIAGGERTPLADPAEDPERAAARREIRALLERAIDALPDA 153 (231)
T ss_pred hcCCCchhHHHHHHHHHHHHHHHHHhhcccccchhcccccccccccccccCcccCChHHHHHHHHHHHHHHHHHHhCCHH
Confidence 23456676655555556655443322100 00000 0 00011112234555667799999999999
Q ss_pred HHHHHhc
Q 006037 635 VQQLLLF 641 (663)
Q Consensus 635 lq~~l~~ 641 (663)
-++|+.+
T Consensus 154 ~r~i~~l 160 (231)
T PRK11922 154 FRAVFVL 160 (231)
T ss_pred Hhhhhee
Confidence 9999865
No 32
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=20.75 E-value=1.6e+02 Score=28.92 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhcCcHHHHHHHhc
Q 006037 616 ICQKLKGDLLAVFNVLPKDVQQLLLF 641 (663)
Q Consensus 616 ~~~~l~~~l~~i~~~lp~dlq~~l~~ 641 (663)
....+...|+..+..||+.-++|+.+
T Consensus 120 ~~~e~~~~l~~~l~~Lp~~~r~i~~l 145 (192)
T PRK09643 120 ARVETALAVQRALMRLPVEQRAALVA 145 (192)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34455677888999999999999854
No 33
>COG4220 Phage DNA packaging protein, Nu1 subunit of terminase [DNA replication, recombination, and repair]
Probab=20.58 E-value=5.2e+02 Score=25.98 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhchhhhhcccCCCCCCCCCCCCCCCCCCChHHHHHHHHh
Q 006037 470 HFLELTTNFLAPFGPYFRTTTPSEGSSPFVDPPTLPPFNANEFLSSLQA 518 (663)
Q Consensus 470 HF~eLT~~FL~PlerY~~sl~P~~~~sp~~~pp~l~pF~~~~FL~sL~~ 518 (663)
-.++|+--=|.-+..|-..-+|+.+-- .-+...+|+...-++.+.+
T Consensus 11 ~Laelf~v~~rtv~~w~~~GiPv~~~r---gkg~e~~fd~a~~i~wyae 56 (174)
T COG4220 11 CLAELFGVSLRTVQKWQEQGIPVSNGR---GKGDEDAFDLAAAISWYAE 56 (174)
T ss_pred HHHHHHcccHHHHHHHHhcCCeeecCC---CCCcchhhhHHHHHHHHHh
Confidence 344444444444455554445541110 1245566666655555553
Done!