Query 006037
Match_columns 663
No_of_seqs 165 out of 231
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:17:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tw8_A DENN domain-containing 99.9 6.3E-24 2.2E-28 230.2 22.1 242 26-355 14-257 (391)
2 2kwv_A RAD30 homolog B, DNA po 30.6 17 0.00057 27.7 1.1 25 626-651 19-43 (48)
3 3ghg_A Fibrinogen alpha chain; 24.9 59 0.002 36.3 4.5 18 612-629 173-190 (562)
4 1v54_E Cytochrome C oxidase po 23.0 81 0.0028 28.0 4.2 47 535-598 13-59 (109)
5 2krx_A ASL3597 protein; struct 21.4 52 0.0018 28.6 2.6 29 610-638 23-52 (94)
6 2y69_E Cytochrome C oxidase su 16.0 1.8E+02 0.0063 27.1 5.1 83 535-635 56-147 (152)
7 3v42_A Folliculin; tumor suppr 15.9 1.7E+02 0.0059 29.1 5.4 40 271-311 19-58 (226)
8 4aqn_A Pesticin; toxin, bacter 15.4 3.1E+02 0.01 29.0 7.2 54 509-564 291-351 (357)
9 2afr_A Cobalamin biosynthesis 14.0 1.1E+02 0.0038 30.6 3.4 32 273-308 123-154 (231)
10 1jhg_A Trp operon repressor; c 12.0 3E+02 0.01 23.9 5.2 88 548-639 2-93 (101)
No 1
>3tw8_A DENN domain-containing protein 1B; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.92 E-value=6.3e-24 Score=230.16 Aligned_cols=242 Identities=16% Similarity=0.212 Sum_probs=179.3
Q ss_pred hheeEEEEee--CCCCccceeeCCCCCCChhhhhhcccccCCCccccccCcccCCeeEEEEEecCCCCCCCCCCCCcccc
Q 006037 26 VVAFCTIRFD--LEQGQLIEDCYPPGCLTQDEELEVAYSSFPDSVSQHQNRSSIHDCIFFFRFQRHKNLPQGNVTPSEIT 103 (663)
Q Consensus 26 v~~icVV~FD--le~Gq~vE~~YP~~~Ls~~Ek~~Ia~lsFPDs~~~~~n~~~~~Dt~F~Frir~~~~~~~~~~~~~~~~ 103 (663)
..|+|+|.=- .+.++.|.+.||++.-.++--+.|...+|||+..-. +.......|+|=+.+.
T Consensus 14 f~~~~~v~~p~~~~~~p~i~~~fP~~~~d~~~l~~ip~FCfP~~~~~~--~~~~~~~~fsFVLTd~-------------- 77 (391)
T 3tw8_A 14 FDLVLKVKCHASENEDPVVLWKFPEDFGDQEILQSVPKFCFPFDVERV--SQNQVGQHFTFVLTDI-------------- 77 (391)
T ss_dssp CSEEEEEEC-----CCCEEEEEESTTCCCHHHHHHHHHHHSCSCHHHH--GGGCCSEEEEEEEECT--------------
T ss_pred EEEEEEEeCCCCCCCCCeeeEeCCCCcccchhhhccccccCCCccccC--ccCCCCceEEEEEecC--------------
Confidence 3466676553 456799999999976444445679999999997532 1123457888877653
Q ss_pred ccccccCcchhHHHHHhhhccCCCCCCCCceEEEEEeeeeecCCCccCcceeeEEEEeeCCCchhhHHHHHHHhchhhhc
Q 006037 104 EINDKITSSELTEEKLLKRSKSFSSSKGSRYFYGYVFNRQRHDERLKRGGEQKSLVILSHGPFSSVFRPLLQIMGPLYFD 183 (663)
Q Consensus 104 ~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~lYG~v~FRQ~kD~svkRGy~QKSlVIlS~lPy~~lF~~lL~~i~p~yF~ 183 (663)
++...|||+.- +. +.||++|||||+||+++|+.+|..+.+.|++
T Consensus 78 ---------------------------dG~r~yg~Cr~----~~-----~~~k~icilS~lp~f~~F~k~L~~l~~~~~~ 121 (391)
T 3tw8_A 78 ---------------------------ESKQRFGFCRL----TS-----GGTICLCILSYLPWFEVYYKLLNTLADYLAK 121 (391)
T ss_dssp ---------------------------TSCEEEEEEEE----CT-----TSSEEEEEEESSCCHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------CCCEEEEEEEc----cC-----CCceEEEEEeCChHHHHHHHHHHHHHHHHhc
Confidence 35678999852 21 3579999999999999999999999999999
Q ss_pred ccHHHHHHHHHHhccCCCCCCCCceeecccceeEEEeCCCCCCCCCccCccccccccccCCCCCCCCCCCCccccccchh
Q 006037 184 VGKKAIEHIASYVSIWPSPVPGKLMELPIGNAMLKVNLPPAHSLPLESGMLSEESAASVAPFLPYNQSIPQGLFHDSDLF 263 (663)
Q Consensus 184 ~g~~~LE~a~~~I~~WP~p~pg~~l~Lp~lg~vl~v~iP~~~~~p~~~~~~~~~~~~~~~p~~~~~~~~P~~~~~~~~lf 263 (663)
.+...||++++.|.+||.|.||++++++..+ +++ .|....+| . .| ...+..+||
T Consensus 122 ~~~~~le~~~~~l~~~P~P~pG~~v~l~~~~-~~~--~P~~~~Lp----------------~------~~-~~~~~~~Lf 175 (391)
T 3tw8_A 122 ELENDLNETLRSLYNHPVPKANTPVNLSVHS-YFI--APDVTGLP----------------T------IP-ESRNLTEYF 175 (391)
T ss_dssp TCHHHHHHHHHHHHHSCCCCSCC-------------------CCC----------------C------BT-TSHHHHHHH
T ss_pred CCchHHHHHHHHHhhCCCCCCCCeEEEeccc-eee--CCCCCCCC----------------C------CC-CCCCHHHHH
Confidence 8888999999999999999999998887754 221 23211111 0 01 113344566
Q ss_pred hhhHhhhHHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeE
Q 006037 264 GTFRGLLLQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMV 343 (663)
Q Consensus 264 ~~f~~~l~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYFTIhD~dF~~~~~~~~~~~~p~~I 343 (663)
+++. ..++..||+++|++++|||++.+++.+|.+|.|+++||.|+.|.+.|.|+++.|..|| . .+|.++|
T Consensus 176 ~~L~--~~~il~l~~~~LlE~rIl~~S~~~~~Ls~~~~al~~Ll~Pf~w~~~~IPvLP~~l~d~---l-----~aP~Pfi 245 (391)
T 3tw8_A 176 VAVD--VNNMLQLYASMLHERRIVIISSKLSTLTACIHGSAALLYPMYWQHIYIPVLPPHLLDY---C-----CAPMPYL 245 (391)
T ss_dssp HHSC--HHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTTTSCCCSEEESSCCGGGGGG---G-----GCSSCEE
T ss_pred HhCC--HHHHHHHHHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhcCcccCcceEeecCHHHHhH---h-----cCCCCEE
Confidence 6663 6999999999999999999999999999999999999999999999999999998776 3 3789999
Q ss_pred EecchHHHHHhh
Q 006037 344 LGVTNLFFLKAL 355 (663)
Q Consensus 344 lGVTNPfF~k~~ 355 (663)
+||++.++.+..
T Consensus 246 iGv~~~~~~~~~ 257 (391)
T 3tw8_A 246 IGIHSSLIERVK 257 (391)
T ss_dssp EEEETTTHHHHH
T ss_pred EEecchhHHHhh
Confidence 999999987654
No 2
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=30.65 E-value=17 Score=27.67 Aligned_cols=25 Identities=36% Similarity=0.577 Sum_probs=19.6
Q ss_pred HHHhcCcHHHHHHHhcCchhhhhccC
Q 006037 626 AVFNVLPKDVQQLLLFNPERAALLQR 651 (663)
Q Consensus 626 ~i~~~lp~dlq~~l~~~~~~~~~~~~ 651 (663)
.+|+.||.|+|+=|+++=.|+. +||
T Consensus 19 eVF~~LP~dIQ~Ells~~~~e~-~~g 43 (48)
T 2kwv_A 19 EVFKQLPADIQEEILSGKSREN-LKG 43 (48)
T ss_dssp GGTTTSCHHHHHHHTTCCCSCC-CC-
T ss_pred HHHHHCcHHHHHHHHhcchHHh-hcc
Confidence 4789999999999999877663 444
No 3
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.92 E-value=59 Score=36.28 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=13.4
Q ss_pred ChHHHHHHHHHHHHHHHh
Q 006037 612 DSAEICQKLKGDLLAVFN 629 (663)
Q Consensus 612 ~~~~~~~~l~~~l~~i~~ 629 (663)
++-+.-+.+|.||+.++.
T Consensus 173 vd~~sY~~~QKQLeQv~a 190 (562)
T 3ghg_A 173 VDLKDYEDQQKQLEQVIA 190 (562)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhh
Confidence 566777778888887765
No 4
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=23.00 E-value=81 Score=28.05 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHH
Q 006037 535 DLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLI 598 (663)
Q Consensus 535 ~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~~~eve~vDl~~~l~~~l~ 598 (663)
.=|..||..|+-++| |+.+-+.+++..-+ -.|.+||+--||=-++|+
T Consensus 13 aRy~~~F~~~~iD~~------e~rrglN~l~~~Dl-----------VP~P~ii~aaLrAcRRvN 59 (109)
T 1v54_E 13 ARWVTYFNKPDIDAW------ELRKGMNTLVGYDL-----------VPEPKIIDAALRACRRLN 59 (109)
T ss_dssp HHHHHHHTCTTCCHH------HHHHHHHHHTTSSB-----------CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCcCccHH------HHHHHHHHHhcccc-----------CCCcHHHHHHHHHHHHhh
Confidence 338999999999999 66666666554333 478888888777777765
No 5
>2krx_A ASL3597 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; NMR {Nostoc SP}
Probab=21.36 E-value=52 Score=28.57 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHHHHHH-hcCcHHHHHH
Q 006037 610 ATDSAEICQKLKGDLLAVF-NVLPKDVQQL 638 (663)
Q Consensus 610 ~~~~~~~~~~l~~~l~~i~-~~lp~dlq~~ 638 (663)
....++++++|+..|+..- ..||.|||.+
T Consensus 23 fLT~~Ell~~Lk~~L~~~~~~~LP~dL~~~ 52 (94)
T 2krx_A 23 FLTTIELLEKLKGELEKISFSDLPLELQKL 52 (94)
T ss_dssp EECHHHHHHHHHHHHHHSCTTTSCHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhCccccCCHHHHhC
Confidence 3467899999999999996 9999999875
No 6
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=15.98 E-value=1.8e+02 Score=27.13 Aligned_cols=83 Identities=13% Similarity=0.155 Sum_probs=48.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHHHH---------HHHHh
Q 006037 535 DLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLIQE---------IQLQQ 605 (663)
Q Consensus 535 ~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~~~eve~vDl~~~l~~~l~~e---------~~~~~ 605 (663)
.=|..||..|+-++| |+.+-+++++..-+ -.|.+||+--||=-++|+.- ++..+
T Consensus 56 aRy~~~F~~~~iD~w------ElrrglN~l~~~Dl-----------VPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 56 ARWVTYFNKPDIDAW------ELRKGMNTLVGYDL-----------VPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp HHHHHHHTCTTCCHH------HHHHHHHHHTTSSB-----------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCcCccHH------HHHHHHHHHhcccc-----------CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 338899999999999 66665655544322 47888888888777776532 12122
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHhcCcHHH
Q 006037 606 SGCAATDSAEICQKLKGDLLAVFNVLPKDV 635 (663)
Q Consensus 606 ~~~~~~~~~~~~~~l~~~l~~i~~~lp~dl 635 (663)
+.+ ...=+-+++.|+--++.+==.+||||
T Consensus 119 ~~~-~~iY~y~lqElkPtl~ELGI~t~EeL 147 (152)
T 2y69_E 119 GPH-KEIYPYVIQELRPTLNELGISTPEEL 147 (152)
T ss_dssp TTC-TTHHHHHHHHHHHHHHHHTCCCTTTT
T ss_pred CCc-hhhHHHHHHHHhhHHHHhCCCCHHHh
Confidence 211 11123455555555555444566654
No 7
>3v42_A Folliculin; tumor suppressor, protein binding; 2.00A {Homo sapiens}
Probab=15.93 E-value=1.7e+02 Score=29.10 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhcCCC
Q 006037 271 LQLWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIAPLL 311 (663)
Q Consensus 271 ~~L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~PL~ 311 (663)
....+|-=.+|+|--|+|-|+++..|..+..+|.+|+ |..
T Consensus 19 ~~F~~l~~~vl~GnQiIVrg~~~~~~~s~~~~L~~lL-P~~ 58 (226)
T 3v42_A 19 PSFRMLAWHVLMGNQVIWKSRDVDLVQSAFEVLRTML-PVG 58 (226)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHHHHHGGGS-CGG
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHHHHHHHHHHHHHhC-CHH
Confidence 4455566677899999999999999999987777776 443
No 8
>4aqn_A Pesticin; toxin, bacteriocin, colicin, three domains, muramidase; 1.98A {Yersinia pestis} PDB: 4epf_A 4arm_B 4arl_A 4arm_A 4arq_B 4arp_A 4arq_A
Probab=15.37 E-value=3.1e+02 Score=29.00 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=35.3
Q ss_pred hHHHHHHHH-hcCC------CccccccccCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 006037 509 ANEFLSSLQ-ARGV------GKFLSKRMRSNWLDLYRRFLKGPNFMPWFQRRRAAAEQEQHRL 564 (663)
Q Consensus 509 ~~~FL~sL~-~~g~------~~~l~~~~k~~w~~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l 564 (663)
++.-|.++- +.|. |.|...-.++||.++++..-.- +.++..||++|+.--++.+
T Consensus 291 ~QTVLvSL~YQyGs~Lssk~PnFw~aV~k~DW~gA~~ELRnf--gd~Y~~RRn~EAdLLq~Gl 351 (357)
T 4aqn_A 291 TRTALVSIGYQKGFKLSRTAPTVWNKVIAKDWNGLVNAFNNI--VDGMSDRRKREGALVQKDI 351 (357)
T ss_dssp HHHHHHHHHHHHCSCHHHHSHHHHHHHHTTCHHHHHHHHHHC--CSSCHHHHHHHHHHHHHHH
T ss_pred HhhHhhhhhhhcCCCccccChHHHHHHHhccHHHHHHHHHHh--ccchhhHhHHHHHHHHhcc
Confidence 455555555 5575 2233334579999998766554 6788899999987655543
No 9
>2afr_A Cobalamin biosynthesis precorrin isomerase; 2.30A {Leptospira interrogans} PDB: 2afv_A*
Probab=13.96 E-value=1.1e+02 Score=30.58 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCcEEEECCChhHHHHHHHHHHHhhc
Q 006037 273 LWVLWELLLIGEPILVIAPTPPQCCEAVASLVSLIA 308 (663)
Q Consensus 273 L~~LWEllLt~epIlVia~sP~~~S~aVlaL~SLI~ 308 (663)
+...|+.+++.+.|+++|+-|+- .+.|+.||.
T Consensus 123 ~~~a~~~l~l~~aIvaIGNAPTA----L~~Lleli~ 154 (231)
T 2afr_A 123 IQKANSFNLLNESIIVIGNAPTA----LLEIEKLIR 154 (231)
T ss_dssp HHHHHHTTCSTTCEEEESSCHHH----HHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEeCcHHH----HHHHHHHHH
Confidence 55556554446699999999974 556666664
No 10
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=11.97 E-value=3e+02 Score=23.87 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHhc-cCCcchh--hhHHHHHHHHHHHH-HHHHhccCCCCChHHHHHHHHHH
Q 006037 548 PWFQRRRAAAEQEQHRLWRQARMRTDIQQLIA-KMSELES--VDTFNAVERHLIQE-IQLQQSGCAATDSAEICQKLKGD 623 (663)
Q Consensus 548 ~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~-~~~eve~--vDl~~~l~~~l~~e-~~~~~~~~~~~~~~~~~~~l~~~ 623 (663)
+|+..+..+.-+.+.+.-........+..++. --+.-|+ +-+=+.|-+.|.+. +....-......|..|+-|++
T Consensus 2 ~~~~~~~~~~~~~l~~~i~~~~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi~-- 79 (101)
T 1jhg_A 2 AAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGS-- 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHH--
T ss_pred ccccccchHHHHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHHH--
Confidence 56767665555555555555555555555653 2344444 33333333322211 110000112335777888774
Q ss_pred HHHHHhcCcHHHHHHH
Q 006037 624 LLAVFNVLPKDVQQLL 639 (663)
Q Consensus 624 l~~i~~~lp~dlq~~l 639 (663)
..+..+++++++.|
T Consensus 80 --r~L~~l~~~~k~~l 93 (101)
T 1jhg_A 80 --NSLKAAPVELRQWL 93 (101)
T ss_dssp --HHHHHSCHHHHHHH
T ss_pred --HHHHHccHHHHHHH
Confidence 45578888888886
Done!