Query 006037
Match_columns 663
No_of_seqs 165 out of 231
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 14:17:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006037.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006037hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54e_ a.118.11.1 (E:) Cytoch 17.0 86 0.0063 25.6 5.1 47 535-598 9-55 (105)
2 d2gyc31 a.108.1.1 (3:2-48) Rib 16.2 29 0.0021 24.5 1.6 27 571-597 3-29 (47)
3 d1gkub1 c.37.1.16 (B:1-250) He 10.3 2.5E+02 0.018 24.3 7.0 34 280-313 83-116 (237)
4 d1f2va_ c.23.17.1 (A:) Precorr 9.9 1.3E+02 0.0097 27.2 4.8 57 282-368 127-192 (209)
5 d1h3ga2 b.71.1.1 (A:518-600) C 7.7 1.1E+02 0.0083 23.5 2.8 21 137-165 11-31 (83)
6 d1io1a_ e.32.1.1 (A:) Phase 1 7.5 1.7E+02 0.012 26.5 4.5 41 584-631 27-67 (395)
7 d1v9va1 a.29.10.1 (A:8-108) Mi 6.8 2.2E+02 0.016 22.8 4.2 33 556-598 61-93 (101)
8 d2p6va1 a.277.1.1 (A:582-678) 6.6 3.7E+02 0.027 21.3 5.5 57 585-644 6-68 (97)
9 d2zjrv1 a.2.2.1 (V:1-66) Ribos 6.5 2.8E+02 0.02 20.1 4.5 50 578-629 6-55 (66)
10 d1vqov1 a.2.2.1 (V:1-65) Ribos 6.2 4.6E+02 0.034 18.8 6.1 51 578-629 8-58 (65)
No 1
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.04 E-value=86 Score=25.61 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHH
Q 006037 535 DLYRRFLKGPNFMPWFQRRRAAAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLI 598 (663)
Q Consensus 535 ~LYrrF~~spnF~~Wl~~r~~~~~~~~~~l~~~a~~~~d~~~~~~~~~eve~vDl~~~l~~~l~ 598 (663)
.=|..||..|+-++| |+.+-+.+++..=+ -.|-+||+--||=-++|+
T Consensus 9 aRy~~~F~~~~iD~w------e~rrgmN~l~~~Dl-----------VPeP~Ii~aALrAcRRvN 55 (105)
T d1v54e_ 9 ARWVTYFNKPDIDAW------ELRKGMNTLVGYDL-----------VPEPKIIDAALRACRRLN 55 (105)
T ss_dssp HHHHHHHTCTTCCHH------HHHHHHHHHTTSSB-----------CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCcCccHH------HHHHHHHHHhcccc-----------CCCcHHHHHHHHHHHHhh
Confidence 348999999999999 66666666554333 478888888777777665
No 2
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=16.22 E-value=29 Score=24.49 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=21.6
Q ss_pred hccHHHHhccCCcchhhhHHHHHHHHH
Q 006037 571 RTDIQQLIAKMSELESVDTFNAVERHL 597 (663)
Q Consensus 571 ~~d~~~~~~~~~eve~vDl~~~l~~~l 597 (663)
+.||..-+..++=.|+|||+-.+++|.
T Consensus 3 ke~Ileaia~MSVmdvveLi~amEEKF 29 (47)
T d2gyc31 3 KDQIIEAVAAMSVMDVVELISAMEEKF 29 (47)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 345666667799999999999999883
No 3
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=10.26 E-value=2.5e+02 Score=24.30 Aligned_cols=34 Identities=21% Similarity=0.170 Sum_probs=26.6
Q ss_pred HHhCCcEEEECCChhHHHHHHHHHHHhhcCCCCC
Q 006037 280 LLIGEPILVIAPTPPQCCEAVASLVSLIAPLLCS 313 (663)
Q Consensus 280 lLt~epIlVia~sP~~~S~aVlaL~SLI~PL~y~ 313 (663)
+.-|..+||++|+-..+.+..-.+..+..-+...
T Consensus 83 ~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~ 116 (237)
T d1gkub1 83 ALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 116 (237)
T ss_dssp HTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred HHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCc
Confidence 3458899999999989999888888877654443
No 4
>d1f2va_ c.23.17.1 (A:) Precorrin-8x methylmutase {Pseudomonas denitrificans [TaxId: 43306]}
Probab=9.87 E-value=1.3e+02 Score=27.20 Aligned_cols=57 Identities=19% Similarity=0.381 Sum_probs=35.2
Q ss_pred hCCcEEEECCChhHHHHHHHHHHHhhcCCCCCCcccccccccCcchhhhhcccCCCCCCCeEEec----chHHHHHh-h-
Q 006037 282 IGEPILVIAPTPPQCCEAVASLVSLIAPLLCSIDFRPYFTIHDPQFAHLNSLQEGDTFPPMVLGV----TNLFFLKA-L- 355 (663)
Q Consensus 282 t~epIlVia~sP~~~S~aVlaL~SLI~PL~y~gd~RPYFTIhD~dF~~~~~~~~~~~~p~~IlGV----TNPfF~k~-~- 355 (663)
.+..|+|+|+.|+- .+.|+.||. ++...|..|+|+ .|--=.|. |
T Consensus 127 ~~gaIvvIGNAPTA----L~~lleli~--------------------------~g~~~PalVIG~PVGFVgaaESK~~L~ 176 (209)
T d1f2va_ 127 LAGSVVAIGNAPTA----LFFLLEMLR--------------------------DGAPKPAAILGMPVGFVGAAESKDALA 176 (209)
T ss_dssp HTTCEEEECSCHHH----HHHHHHHHH--------------------------TTCCCCSEEEECCCSSSSHHHHHHHHH
T ss_pred CCCCEEEEcCChHH----HHHHHHHHh--------------------------cCCCCCcEEEECCccccChHHHHHHHH
Confidence 47899999999974 344555554 234456677665 33322232 2
Q ss_pred ---cCCCeEEEcCCCC
Q 006037 356 ---RKIPHIVSVGSPA 368 (663)
Q Consensus 356 ---~~WPhil~l~~~~ 368 (663)
..-|+|...|..+
T Consensus 177 ~s~~~vP~It~~GrkG 192 (209)
T d1f2va_ 177 ENSYGVPFAIVRGRLG 192 (209)
T ss_dssp HCCTTCCEEEECTTCC
T ss_pred hCCCCCCEEEEecCCC
Confidence 2579988887653
No 5
>d1h3ga2 b.71.1.1 (A:518-600) Cyclomaltodextrinase {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=7.66 E-value=1.1e+02 Score=23.55 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=15.4
Q ss_pred EEEeeeeecCCCccCcceeeEEEEeeCCC
Q 006037 137 GYVFNRQRHDERLKRGGEQKSLVILSHGP 165 (663)
Q Consensus 137 G~v~FRQ~kD~svkRGy~QKSlVIlS~lP 165 (663)
.|||||.-.|+ +-+||+-.-.
T Consensus 11 vYvyfR~~~~~--------~VmVi~N~n~ 31 (83)
T d1h3ga2 11 TWVYFRYNKDK--------RIMVAMNNND 31 (83)
T ss_dssp EEEEEEECSSE--------EEEEEEECSS
T ss_pred EEEEEEEeCCC--------EEEEEECCCC
Confidence 37999998885 5577776644
No 6
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=7.47 E-value=1.7e+02 Score=26.49 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=28.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHhcC
Q 006037 584 LESVDTFNAVERHLIQEIQLQQSGCAATDSAEICQKLKGDLLAVFNVL 631 (663)
Q Consensus 584 ve~vDl~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l 631 (663)
-|+.|++.|+|++-. |...+. .++.=|+.|+.+++.++..|
T Consensus 27 ~~~~~iL~r~reLav-----qaan~t--~~~~dr~ai~~E~~~l~~ei 67 (395)
T d1io1a_ 27 NEINNNLQRVRELAV-----QSANST--NSQSDLDSIQAEITQRLNEI 67 (395)
T ss_dssp HHHHHHHHHHHHHHH-----HHTCTT--CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HhccCC--CCHHHHHHHHHHHHHHHHHH
Confidence 478899999997744 444322 35778888888888877543
No 7
>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated serine/threonine-protein kinase 3, MAST3 (KIAA0561) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.84 E-value=2.2e+02 Score=22.83 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHhhccHHHHhccCCcchhhhHHHHHHHHHH
Q 006037 556 AAEQEQHRLWRQARMRTDIQQLIAKMSELESVDTFNAVERHLI 598 (663)
Q Consensus 556 ~~~~~~~~l~~~a~~~~d~~~~~~~~~eve~vDl~~~l~~~l~ 598 (663)
|+.++++.|..+|. .++|.|-|-.+.++-+||.
T Consensus 61 Else~LekLl~ea~----------erSe~~~~~~i~~lvkkLL 93 (101)
T d1v9va1 61 EMQEKLERLLQDAH----------ERSDSEEVSFIVQLVRKLL 93 (101)
T ss_dssp HHHHHHHHHHHHHH----------HTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------hccCHHHHHHHHHHHHHHH
Confidence 67777777777766 3677777777777766654
No 8
>d2p6va1 a.277.1.1 (A:582-678) Transcription initiation factor TFIID subunit 4, TAF4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.56 E-value=3.7e+02 Score=21.28 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHhc-C-c----HHHHHHHhcCch
Q 006037 585 ESVDTFNAVERHLIQEIQLQQSGCAATDSAEICQKLKGDLLAVFNV-L-P----KDVQQLLLFNPE 644 (663)
Q Consensus 585 e~vDl~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~-l-p----~dlq~~l~~~~~ 644 (663)
|.+|.+.|+|+=|.-=+++..+. ..++++-++++.-|..+++. + | ..||..|.+.||
T Consensus 6 ~~~~nv~Kck~FL~tLi~l~s~~---~~spe~~~~Vr~LV~~L~~~~i~~EEF~~~Lq~~lns~pq 68 (97)
T d2p6va1 6 ETMENVKKCKNFLSTLIKLASSG---KQSTETAANVKELVQNLLDGKIEAEDFTSRLYRELNSSPQ 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSS---SSCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCCchHHHHHHHHHHHHHhCCcCHHHHHHHHHHHhcCCCC
Confidence 55677777777765433333222 23567777777777777762 2 2 346666666665
No 9
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.54 E-value=2.8e+02 Score=20.13 Aligned_cols=50 Identities=8% Similarity=0.249 Sum_probs=34.0
Q ss_pred hccCCcchhhhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHh
Q 006037 578 IAKMSELESVDTFNAVERHLIQEIQLQQSGCAATDSAEICQKLKGDLLAVFN 629 (663)
Q Consensus 578 ~~~~~eve~vDl~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~l~~~l~~i~~ 629 (663)
+++++.-|+.+.+..+++.|.. +..+...++. ..+.-..+++.+|.-|.-
T Consensus 6 lr~~s~~eL~~~l~~lk~elf~-LRfq~~tgql-~n~~~ik~~Rk~IARi~T 55 (66)
T d2zjrv1 6 MRNLQATDFAKEIDARKKELME-LRFQAAAGQL-AQPHRVRQLRREVAQLNT 55 (66)
T ss_dssp TTTSCHHHHHHHHHTHHHHHHH-HHHHHHHSCC-CCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHH-HHHHHHHCCC-cchHHHHHHHHHHHHHHH
Confidence 4677888889999988877653 4444444444 356777778877776654
No 10
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=6.18 E-value=4.6e+02 Score=18.81 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=32.8
Q ss_pred hccCCcchhhhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHh
Q 006037 578 IAKMSELESVDTFNAVERHLIQEIQLQQSGCAATDSAEICQKLKGDLLAVFN 629 (663)
Q Consensus 578 ~~~~~eve~vDl~~~l~~~l~~e~~~~~~~~~~~~~~~~~~~l~~~l~~i~~ 629 (663)
+++++.-|..+.+..+++.|-. +...+..++...++.-..+++.+|.-|.-
T Consensus 8 lr~ls~~eL~~~l~elk~El~~-LR~~q~~~gql~~~~~ik~~Rk~IARi~T 58 (65)
T d1vqov1 8 IRDMTPAEREAELDDLKTELLN-ARAVQAAGGAPENPGRIKELRKAIARIKT 58 (65)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHH-HHHHHHTTCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 4567888888888888877653 32223333444567777778877776653
Done!