BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006039
(663 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q76PD2|YJ01_SCHPO LIM domain and RING finger protein C1223.01 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC1223.01 PE=1 SV=2
Length = 732
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
Query: 3 GRTKGDSVVD-GTESERGGFMGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQ 61
G TK + V D G++ E GF GHP CEFC T FY D+EL+ H +H C+IC Q G+
Sbjct: 222 GLTKHNEVGDQGSDLEITGFKGHPKCEFCNTHFYDDDELFKHCREKHERCYICD-QVAGR 280
Query: 62 --YEYYKNYDDLEIHFRRDHFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRMSRAKRN 119
++Y+KNYD LE HF +DH++C + CL +KFVVF +E ++K H EH ++ +
Sbjct: 281 PTHQYFKNYDSLERHFEKDHYICRERECLERKFVVFGTEIDLKAHQLDEHPHNFTQRELR 340
Query: 120 AALQIPICFRY 130
A +I F Y
Sbjct: 341 EARRIIPQFSY 351
Score = 34.7 bits (78), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 385 APSVENIQAANRSLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQY---- 440
+P + QA ++ +++RM+ YD+ K FK + +R ++ R+ + + +
Sbjct: 489 SPMASSEQAQHQQVIDRMQKLTNYDDHKINDFKFAVSSFRGNVMPAREAVARITKLVAKP 548
Query: 441 --GLSHLVLELARLCPDALKQKELIETY 466
LS + ++A L + K +EL+E +
Sbjct: 549 HEQLSGVFNQIANLLENKEKSRELLEAW 576
>sp|Q05580|YD266_YEAST LIM domain and RING finger protein YDR266C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YDR266C PE=1
SV=1
Length = 639
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 20 GFMGHPMCEFCRTP-FYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRD 78
GF GHPMC FC FY D+ELY HM +H CHIC + +P +Y+K+Y+ L HF+
Sbjct: 217 GFKGHPMCAFCSGKRFYSDDELYIHMRNQHEKCHICDKMNPASPQYFKDYNQLFDHFKHS 276
Query: 79 HFLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRM 113
H++C + CL KFVVF+ E E++ H EHG +
Sbjct: 277 HYVCTVQTCLDNKFVVFKDELELQAHILQEHGNIL 311
>sp|Q6PFK1|ZN598_DANRE Zinc finger protein 598 OS=Danio rerio GN=znf598 PE=1 SV=2
Length = 953
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 10/118 (8%)
Query: 23 GHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRDHFLC 82
GHP+C+FC + ++EL H+ +HY CH C G EYY +Y L HFR H+LC
Sbjct: 213 GHPLCKFCDDRYLDNDELLKHLRRDHYFCHFCDAD--GAQEYYSDYQYLSEHFRESHYLC 270
Query: 83 EDEACLAKKFV-VFQSEAEMKRHNAIEHGGRMSRAKRNAALQIPICFRY-----RRNN 134
E+ C ++F F++E + K H A H + A++N QI I F Y RRN+
Sbjct: 271 EEGRCSTEQFTHAFRTEIDYKAHKAAAHSKNRAEARQNR--QIDIQFNYAPRQQRRND 326
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 362 PSVSDFPPVSAMRTDKMPSISQPAPSV------ENIQAANRSLVERMRAAFEYDEDKYTA 415
P + P S + + ++++P P++ ++ Q N L++ ++ + DE K+
Sbjct: 764 PGFTGVPLNSNVEDSSVSAVNRPTPAIGSYLIPDHFQQRNMDLIQSIKNFLQNDETKFNE 823
Query: 416 FKDITAQYRQGLIDTRKYLEYVKQY---GLSHLVLELARLCPDALKQKELIETY 466
FK+ + Q+RQG + +Y + ++ + + EL L PD KQ+EL+ +
Sbjct: 824 FKNYSGQFRQGALPAVQYYKSCQELLGENFNRVFNELLVLLPDTRKQQELLTAH 877
>sp|Q80YR4|ZN598_MOUSE Zinc finger protein 598 OS=Mus musculus GN=Znf598 PE=2 SV=1
Length = 908
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 23 GHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRDHFLC 82
GHP+C+FC + ++EL H+ +HY CH C G +YY +Y L HFR HFLC
Sbjct: 183 GHPLCKFCDERYLDNDELLKHLRRDHYFCHFCDSD--GAQDYYSDYAYLREHFREKHFLC 240
Query: 83 EDEACLAKKFV-VFQSEAEMKRHNAIEHGGRMSRAKRNAALQIPICFRYRRNNEQE 137
E+ C ++F F++E ++K H H + A++N + + F R + E
Sbjct: 241 EEGRCSTEQFTHAFRTEIDLKAHKTACHSRSRAEARQNRQIDLQFSFAPRHSRRSE 296
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 389 ENIQAANRSLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQY---GLSHL 445
EN + N L++ ++ + DE ++ FK + ++RQG+I +Y + + +
Sbjct: 755 ENFRERNLQLIQSIKDFLQSDEACFSKFKSHSGEFRQGMISAAQYYKSCRDLLGESFQKI 814
Query: 446 VLELARLCPDALKQKELIETYN 467
EL L PD KQ+EL+ +
Sbjct: 815 FSELLALLPDTAKQQELLSAHT 836
>sp|Q86UK7|ZN598_HUMAN Zinc finger protein 598 OS=Homo sapiens GN=ZNF598 PE=1 SV=1
Length = 904
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 23 GHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRRDHFLC 82
GHP+C+FC + ++EL H+ +HY CH C G +YY +Y L HFR HFLC
Sbjct: 185 GHPLCKFCDERYLDNDELLKHLRRDHYFCHFCDSD--GAQDYYSDYAYLREHFREKHFLC 242
Query: 83 EDEACLAKKFV-VFQSEAEMKRHNAIEHGGRMSRAKRN--AALQIPICFRYRRNNE 135
E+ C ++F F++E ++K H H + A++N LQ R+ R NE
Sbjct: 243 EEGRCSTEQFTHAFRTEIDLKAHRTACHSRSRAEARQNRHIDLQFSYAPRHSRRNE 298
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
Query: 384 PAPSV----ENIQAANRSLVERMRAAFEYDEDKYTAFKDITAQYRQGLIDTRKYLEYVKQ 439
PAP EN + N L++ +R + DE +++ FK + ++RQGLI +Y + +
Sbjct: 742 PAPRAYLVPENFRERNLQLIQSIRDFLQSDEARFSEFKSHSGEFRQGLISAAQYYKSCRD 801
Query: 440 Y---GLSHLVLELARLCPDALKQKELIETYN 467
+ EL L PD KQ+EL+ +
Sbjct: 802 LLGENFQKVFNELLVLLPDTAKQQELLSAHT 832
>sp|Q6N043|Z280D_HUMAN Zinc finger protein 280D OS=Homo sapiens GN=ZNF280D PE=1 SV=3
Length = 979
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 15/120 (12%)
Query: 26 MCEFCRTPFYGDNELYTHMSTEH------YTCHICQRQHPGQYEYYKNYDDLEIHFRRDH 79
+C+ C F ++ L HM H Y C +C + ++ D+E HFR H
Sbjct: 389 ICKICELSFETEHVLLQHMKDNHKPGEMPYVCQVCNYR-------SSSFSDVETHFRTSH 441
Query: 80 FLCEDEACLAKKFVVFQSEAEMKRHNAIEHGGRMSRAKRNAALQIPICFRYRRNNEQEHR 139
++ C V+ + M H+ ++H + LQ C + Q HR
Sbjct: 442 ENTKNLLCPFCLKVIKIATPYM--HHYMKHQKKGIHRCTKCRLQFLTCKEKMDHKTQHHR 499
>sp|Q7SY21|TADA3_DANRE Transcriptional adapter 3 OS=Danio rerio GN=tada3 PE=2 SV=1
Length = 429
Score = 35.0 bits (79), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 188 DAEDIDTLIQPFESLATTDSE------LASRYLQALGQNSRTAPLEESSFPPLPMASSSS 241
DA+D+D L++ ES + L+ R LQAL + + +P+E+S P +P +
Sbjct: 231 DAKDVDALLKKSESQHEPPEDGCPFGPLSQRLLQALVEENIISPMEDSPIPDIPGKDDGA 290
Query: 242 QQNPRSNSEGL 252
+PRS +
Sbjct: 291 GTSPRSQGKAF 301
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 247,637,848
Number of Sequences: 539616
Number of extensions: 10697193
Number of successful extensions: 30720
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 28726
Number of HSP's gapped (non-prelim): 1400
length of query: 663
length of database: 191,569,459
effective HSP length: 124
effective length of query: 539
effective length of database: 124,657,075
effective search space: 67190163425
effective search space used: 67190163425
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (29.6 bits)