Query 006041
Match_columns 663
No_of_seqs 256 out of 1118
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 17:30:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08866 SRPBCC_11 Ligand-bindi 99.9 2E-22 4.2E-27 184.8 19.4 141 277-419 1-144 (144)
2 cd07813 COQ10p_like Coenzyme Q 99.8 2.6E-20 5.5E-25 170.9 16.6 135 278-419 2-137 (138)
3 PRK10724 hypothetical protein; 99.8 1.1E-19 2.3E-24 175.0 18.2 141 276-423 16-157 (158)
4 cd08861 OtcD1_ARO-CYC_like N-t 99.8 1.5E-17 3.2E-22 152.2 17.8 137 277-419 1-142 (142)
5 cd08860 TcmN_ARO-CYC_like N-te 99.7 1E-16 2.2E-21 151.9 18.1 139 277-420 3-145 (146)
6 PF03364 Polyketide_cyc: Polyk 99.7 4.6E-17 1E-21 147.1 14.6 125 283-414 1-130 (130)
7 cd07819 SRPBCC_2 Ligand-bindin 99.7 2E-16 4.3E-21 142.9 17.6 134 276-417 3-140 (140)
8 COG2867 Oligoketide cyclase/li 99.7 7.5E-16 1.6E-20 146.0 13.4 141 276-423 3-145 (146)
9 cd07817 SRPBCC_8 Ligand-bindin 99.6 9.3E-15 2E-19 132.2 14.8 133 277-418 2-138 (139)
10 cd08876 START_1 Uncharacterize 99.6 7.7E-14 1.7E-18 135.8 19.4 164 239-417 17-194 (195)
11 cd08865 SRPBCC_10 Ligand-bindi 99.6 1.4E-13 3.1E-18 123.2 15.9 136 277-419 1-140 (140)
12 cd05018 CoxG Carbon monoxide d 99.5 2.4E-13 5.3E-18 123.4 16.5 138 275-418 1-144 (144)
13 cd07821 PYR_PYL_RCAR_like Pyra 99.5 2.8E-13 6.2E-18 121.5 16.6 132 276-418 2-140 (140)
14 PF10604 Polyketide_cyc2: Poly 99.5 1.9E-12 4.2E-17 116.3 21.7 136 276-418 3-139 (139)
15 cd07818 SRPBCC_1 Ligand-bindin 99.5 4.9E-13 1.1E-17 123.7 16.7 137 276-419 3-150 (150)
16 cd08862 SRPBCC_Smu440-like Lig 99.5 7.7E-13 1.7E-17 119.5 17.3 137 275-419 1-138 (138)
17 cd08906 START_STARD3-like Chol 99.4 1.8E-12 3.9E-17 130.0 15.8 158 239-419 25-208 (209)
18 cd07824 SRPBCC_6 Ligand-bindin 99.4 3.6E-12 7.8E-17 118.9 15.8 132 277-416 3-145 (146)
19 cd07822 SRPBCC_4 Ligand-bindin 99.4 1.7E-11 3.7E-16 110.1 17.2 137 277-418 2-141 (141)
20 cd08905 START_STARD1-like Chol 99.4 1E-11 2.3E-16 124.3 16.0 164 239-419 25-208 (209)
21 cd08877 START_2 Uncharacterize 99.4 1.6E-11 3.5E-16 122.6 15.4 163 238-419 21-214 (215)
22 cd08874 START_STARD9-like C-te 99.3 2.4E-11 5.2E-16 122.0 16.0 166 236-417 19-203 (205)
23 cd07823 SRPBCC_5 Ligand-bindin 99.3 5.4E-11 1.2E-15 111.0 16.0 133 278-418 2-145 (146)
24 cd07814 SRPBCC_CalC_Aha1-like 99.3 7.3E-11 1.6E-15 106.5 15.4 134 277-419 2-139 (139)
25 cd07820 SRPBCC_3 Ligand-bindin 99.3 8.8E-11 1.9E-15 108.4 15.8 106 278-388 2-112 (137)
26 cd07812 SRPBCC START/RHO_alpha 99.3 2.2E-10 4.7E-15 99.1 16.3 136 278-416 2-140 (141)
27 cd08868 START_STARD1_3_like Ch 99.3 1.9E-10 4.2E-15 114.3 18.1 163 239-419 24-207 (208)
28 cd08871 START_STARD10-like Lip 99.3 3.2E-10 7E-15 113.8 18.8 165 239-425 23-208 (222)
29 cd08903 START_STARD5-like Lipi 99.2 4.2E-10 9.1E-15 112.7 18.5 166 238-419 21-207 (208)
30 cd08911 START_STARD7-like Lipi 99.2 2.6E-10 5.7E-15 114.0 16.6 160 239-419 21-206 (207)
31 cd08870 START_STARD2_7-like Li 99.2 1.4E-09 3.1E-14 108.6 18.4 159 239-419 22-208 (209)
32 cd08869 START_RhoGAP C-termina 99.2 8.1E-10 1.8E-14 109.7 15.7 164 236-416 16-193 (197)
33 cd08910 START_STARD2-like Lipi 99.1 5.3E-10 1.2E-14 112.0 14.1 159 239-419 25-206 (207)
34 cd07825 SRPBCC_7 Ligand-bindin 99.1 7.6E-10 1.6E-14 101.6 13.9 135 276-418 1-144 (144)
35 cd08913 START_STARD14-like Lip 99.1 1.2E-09 2.6E-14 112.4 16.1 162 238-416 58-236 (240)
36 cd08872 START_STARD11-like Cer 99.1 1.4E-09 3.1E-14 111.3 15.7 172 240-425 27-232 (235)
37 cd08866 SRPBCC_11 Ligand-bindi 99.1 2.9E-10 6.3E-15 104.3 9.5 78 96-173 1-144 (144)
38 cd00177 START Lipid-binding ST 99.1 1.5E-08 3.2E-13 96.5 19.3 160 239-416 15-191 (193)
39 cd08914 START_STARD15-like Lip 99.0 1.7E-09 3.7E-14 111.0 12.9 161 238-417 55-233 (236)
40 COG5637 Predicted integral mem 99.0 2E-09 4.3E-14 105.6 12.1 138 274-419 69-210 (217)
41 cd08873 START_STARD14_15-like 99.0 6.9E-09 1.5E-13 106.5 16.6 137 238-388 54-205 (235)
42 cd08867 START_STARD4_5_6-like 99.0 2.1E-08 4.6E-13 99.7 19.5 162 239-417 22-205 (206)
43 smart00234 START in StAR and p 99.0 2.5E-08 5.4E-13 97.7 17.7 167 239-420 19-203 (206)
44 cd07813 COQ10p_like Coenzyme Q 98.9 2.4E-09 5.3E-14 98.3 7.3 77 97-173 2-137 (138)
45 cd07819 SRPBCC_2 Ligand-bindin 98.8 1.7E-08 3.7E-13 91.2 9.0 77 95-171 3-140 (140)
46 PF01852 START: START domain; 98.8 7E-07 1.5E-11 87.2 20.3 168 237-420 17-203 (206)
47 cd07816 Bet_v1-like Ligand-bin 98.8 7E-07 1.5E-11 84.8 18.3 112 276-390 2-122 (148)
48 PF03364 Polyketide_cyc: Polyk 98.7 2.2E-08 4.9E-13 90.5 7.3 67 102-168 1-130 (130)
49 cd08908 START_STARD12-like C-t 98.7 2.8E-07 6.1E-12 93.0 14.7 163 235-416 23-200 (204)
50 KOG3177 Oligoketide cyclase/li 98.7 1.9E-07 4.2E-12 93.6 11.4 145 274-425 67-216 (227)
51 cd08861 OtcD1_ARO-CYC_like N-t 98.6 9.3E-08 2E-12 87.6 8.3 78 96-173 1-142 (142)
52 COG3427 Carbon monoxide dehydr 98.6 1.5E-06 3.3E-11 83.5 16.1 133 276-415 2-137 (146)
53 PF06240 COXG: Carbon monoxide 98.6 3.7E-06 8.1E-11 78.9 18.2 133 279-419 1-137 (140)
54 cd08893 SRPBCC_CalC_Aha1-like_ 98.6 1.1E-06 2.5E-11 79.3 13.8 129 277-419 2-136 (136)
55 cd08904 START_STARD6-like Lipi 98.5 8E-06 1.7E-10 82.4 19.1 162 239-417 22-203 (204)
56 cd07817 SRPBCC_8 Ligand-bindin 98.5 4.2E-07 9.1E-12 82.2 8.6 77 96-172 2-138 (139)
57 cd08876 START_1 Uncharacterize 98.5 1E-06 2.2E-11 86.0 11.7 94 78-171 24-194 (195)
58 cd08899 SRPBCC_CalC_Aha1-like_ 98.5 1.4E-06 3.1E-11 82.9 12.0 129 274-421 10-139 (157)
59 cd08865 SRPBCC_10 Ligand-bindi 98.4 7.2E-07 1.6E-11 79.8 8.3 77 96-172 1-139 (140)
60 cd05018 CoxG Carbon monoxide d 98.4 1.1E-06 2.3E-11 79.9 8.8 77 95-171 2-143 (144)
61 cd08909 START_STARD13-like C-t 98.4 1.2E-05 2.6E-10 81.4 16.2 158 236-416 24-201 (205)
62 cd08862 SRPBCC_Smu440-like Lig 98.3 2.7E-06 5.9E-11 76.8 8.6 78 95-172 2-137 (138)
63 cd08894 SRPBCC_CalC_Aha1-like_ 98.3 3.9E-05 8.5E-10 71.2 16.5 134 277-419 2-139 (139)
64 cd07821 PYR_PYL_RCAR_like Pyra 98.3 3.9E-06 8.4E-11 75.3 9.3 78 95-172 2-140 (140)
65 cd08898 SRPBCC_CalC_Aha1-like_ 98.3 2.2E-05 4.7E-10 71.9 14.3 131 276-419 2-145 (145)
66 cd08897 SRPBCC_CalC_Aha1-like_ 98.2 2.2E-05 4.7E-10 72.4 13.3 127 277-419 2-133 (133)
67 PRK10724 hypothetical protein; 98.2 7.1E-06 1.5E-10 79.5 8.6 83 95-177 16-157 (158)
68 cd08896 SRPBCC_CalC_Aha1-like_ 98.1 0.00019 4.1E-09 67.2 17.2 134 277-418 2-145 (146)
69 cd07818 SRPBCC_1 Ligand-bindin 98.1 9.8E-06 2.1E-10 75.1 8.2 79 95-173 3-150 (150)
70 cd08901 SRPBCC_CalC_Aha1-like_ 98.1 6.5E-05 1.4E-09 69.7 13.6 130 277-419 2-132 (136)
71 cd07823 SRPBCC_5 Ligand-bindin 98.1 9.5E-06 2.1E-10 75.8 7.0 77 96-172 1-145 (146)
72 cd08902 START_STARD4-like Lipi 98.0 0.00018 3.8E-09 72.8 16.3 162 239-417 23-201 (202)
73 cd08860 TcmN_ARO-CYC_like N-te 98.0 2.3E-05 5E-10 74.6 9.4 79 95-173 2-144 (146)
74 PF10604 Polyketide_cyc2: Poly 98.0 4.5E-05 9.7E-10 68.5 10.6 78 95-172 3-139 (139)
75 cd08895 SRPBCC_CalC_Aha1-like_ 98.0 0.00037 8E-09 65.3 16.5 130 277-418 2-145 (146)
76 cd07824 SRPBCC_6 Ligand-bindin 98.0 1.6E-05 3.4E-10 74.3 7.2 74 97-170 4-145 (146)
77 PF08327 AHSA1: Activator of H 98.0 0.00031 6.7E-09 62.6 15.1 121 284-418 1-124 (124)
78 cd08900 SRPBCC_CalC_Aha1-like_ 97.9 0.00072 1.6E-08 63.0 16.6 133 277-419 2-143 (143)
79 cd08891 SRPBCC_CalC Ligand-bin 97.9 0.00047 1E-08 64.8 15.2 134 277-419 2-149 (149)
80 cd07826 SRPBCC_CalC_Aha1-like_ 97.9 0.0011 2.4E-08 62.1 17.4 134 277-418 2-141 (142)
81 cd07812 SRPBCC START/RHO_alpha 97.9 7.4E-05 1.6E-09 64.5 8.7 75 96-170 1-140 (141)
82 PF00407 Bet_v_1: Pathogenesis 97.8 0.001 2.2E-08 64.1 16.8 135 276-418 5-149 (151)
83 cd07814 SRPBCC_CalC_Aha1-like 97.5 0.00029 6.3E-09 63.6 7.4 77 96-173 2-139 (139)
84 cd07822 SRPBCC_4 Ligand-bindin 97.5 0.00037 8E-09 62.6 7.6 77 96-172 2-141 (141)
85 cd08906 START_STARD3-like Chol 97.5 0.00092 2E-08 67.6 11.1 95 79-173 34-208 (209)
86 cd08907 START_STARD8-like C-te 97.4 0.0053 1.2E-07 62.4 14.8 164 234-416 22-201 (205)
87 COG3832 Uncharacterized conser 97.3 0.0079 1.7E-07 57.5 14.2 136 273-418 6-148 (149)
88 cd08905 START_STARD1-like Chol 97.3 0.0026 5.7E-08 64.1 11.4 94 79-172 34-207 (209)
89 PF06240 COXG: Carbon monoxide 97.2 0.00097 2.1E-08 62.7 7.4 31 98-128 1-31 (140)
90 COG3427 Carbon monoxide dehydr 97.2 0.00086 1.9E-08 64.8 6.8 34 95-128 2-35 (146)
91 cd08892 SRPBCC_Aha1 Putative h 97.1 0.0087 1.9E-07 55.1 12.6 120 277-418 2-125 (126)
92 cd08871 START_STARD10-like Lip 97.1 0.005 1.1E-07 62.1 12.0 101 78-178 30-207 (222)
93 cd07820 SRPBCC_3 Ligand-bindin 97.0 0.0026 5.6E-08 58.8 7.6 32 97-128 2-33 (137)
94 cd08868 START_STARD1_3_like Ch 96.9 0.0045 9.8E-08 61.8 9.7 93 81-173 35-207 (208)
95 PTZ00220 Activator of HSP-90 A 96.8 0.0078 1.7E-07 56.3 9.5 122 283-417 1-126 (132)
96 cd08911 START_STARD7-like Lipi 96.4 0.046 1E-06 55.1 12.4 96 78-173 28-206 (207)
97 cd08877 START_2 Uncharacterize 96.3 0.018 4E-07 57.8 8.8 96 78-173 29-214 (215)
98 KOG2761 START domain-containin 96.1 0.25 5.4E-06 50.9 16.0 170 236-421 26-216 (219)
99 PLN00188 enhanced disease resi 96.0 0.81 1.8E-05 54.3 21.7 171 238-420 197-393 (719)
100 cd08910 START_STARD2-like Lipi 95.9 0.06 1.3E-06 54.4 10.3 96 78-173 32-206 (207)
101 cd08903 START_STARD5-like Lipi 95.6 0.13 2.7E-06 52.0 11.6 96 78-173 29-207 (208)
102 cd08899 SRPBCC_CalC_Aha1-like_ 95.4 0.067 1.5E-06 51.0 8.2 78 92-174 9-138 (157)
103 cd00177 START Lipid-binding ST 95.3 0.22 4.7E-06 47.5 11.2 90 79-168 23-189 (193)
104 cd08870 START_STARD2_7-like Li 95.2 0.21 4.6E-06 50.2 11.5 92 82-173 37-208 (209)
105 cd08869 START_RhoGAP C-termina 95.1 0.094 2E-06 52.4 8.7 89 78-169 26-192 (197)
106 cd07825 SRPBCC_7 Ligand-bindin 95.1 0.035 7.6E-07 50.9 5.3 47 95-141 1-56 (144)
107 cd08893 SRPBCC_CalC_Aha1-like_ 95.1 0.092 2E-06 47.3 7.9 30 96-125 2-31 (136)
108 PF10698 DUF2505: Protein of u 95.1 0.82 1.8E-05 44.2 14.6 138 278-418 2-156 (159)
109 cd08867 START_STARD4_5_6-like 94.3 0.4 8.7E-06 47.9 10.9 93 79-171 30-205 (206)
110 cd08874 START_STARD9-like C-te 94.0 0.3 6.4E-06 49.7 9.3 89 78-167 29-199 (205)
111 cd08913 START_STARD14-like Lip 93.9 0.29 6.4E-06 51.0 9.1 80 78-159 66-224 (240)
112 cd08872 START_STARD11-like Cer 93.7 0.8 1.7E-05 47.5 11.9 97 78-174 33-227 (235)
113 COG4276 Uncharacterized conser 93.4 1.8 4E-05 41.9 12.7 128 277-410 4-139 (153)
114 PF01852 START: START domain; 92.1 1.6 3.5E-05 42.7 11.1 44 131-174 160-203 (206)
115 cd08898 SRPBCC_CalC_Aha1-like_ 92.0 0.15 3.3E-06 46.6 3.5 32 95-126 2-33 (145)
116 cd08904 START_STARD6-like Lipi 91.5 2.2 4.7E-05 43.5 11.5 92 78-169 29-201 (204)
117 smart00234 START in StAR and p 90.9 1.8 4E-05 42.5 10.0 83 92-174 43-203 (206)
118 cd08908 START_STARD12-like C-t 89.8 1.4 3.1E-05 45.0 8.4 75 78-154 34-185 (204)
119 cd08864 SRPBCC_DUF3074 DUF3074 89.2 2.2 4.7E-05 43.6 9.2 53 362-416 149-205 (208)
120 cd08901 SRPBCC_CalC_Aha1-like_ 88.4 0.42 9E-06 44.4 3.2 30 96-125 2-31 (136)
121 PF08982 DUF1857: Domain of un 87.6 30 0.00065 33.9 16.0 123 285-419 18-147 (149)
122 COG2867 Oligoketide cyclase/li 87.4 2.4 5.1E-05 41.5 7.6 82 95-176 3-144 (146)
123 cd08873 START_STARD14_15-like 86.0 2.9 6.3E-05 43.7 8.0 50 78-128 62-111 (235)
124 cd08914 START_STARD15-like Lip 85.7 1.8 3.9E-05 45.3 6.4 50 78-128 63-112 (236)
125 cd08902 START_STARD4-like Lipi 82.3 14 0.0003 38.0 10.9 92 79-170 31-200 (202)
126 PF01388 ARID: ARID/BRIGHT DNA 81.8 5.4 0.00012 34.9 6.8 52 481-536 5-60 (92)
127 cd08897 SRPBCC_CalC_Aha1-like_ 79.2 1.9 4.2E-05 39.6 3.3 30 96-125 2-31 (133)
128 cd08891 SRPBCC_CalC Ligand-bin 79.2 1.9 4.1E-05 40.5 3.3 26 96-123 2-27 (149)
129 cd08895 SRPBCC_CalC_Aha1-like_ 78.3 2.1 4.7E-05 40.0 3.4 29 96-124 2-30 (146)
130 COG3832 Uncharacterized conser 78.3 3.4 7.3E-05 39.6 4.8 53 92-144 6-63 (149)
131 cd08863 SRPBCC_DUF1857 DUF1857 77.0 77 0.0017 31.0 14.9 91 285-387 17-109 (141)
132 PF00730 HhH-GPD: HhH-GPD supe 76.2 8.2 0.00018 34.3 6.3 44 480-527 8-51 (108)
133 COG2005 ModE N-terminal domain 75.4 1.4 3.1E-05 42.2 1.3 47 508-561 15-61 (130)
134 COG5637 Predicted integral mem 75.3 15 0.00033 37.4 8.4 36 93-128 69-104 (217)
135 cd08894 SRPBCC_CalC_Aha1-like_ 72.0 3.9 8.4E-05 37.9 3.3 29 96-124 2-30 (139)
136 cd08907 START_STARD8-like C-te 71.6 35 0.00076 35.3 10.2 88 78-169 34-200 (205)
137 PF00126 HTH_1: Bacterial regu 71.5 2 4.2E-05 35.0 1.1 38 515-559 4-41 (60)
138 cd08892 SRPBCC_Aha1 Putative h 71.4 7.4 0.00016 35.7 5.0 38 96-133 2-42 (126)
139 cd07816 Bet_v1-like Ligand-bin 71.2 4.4 9.5E-05 38.6 3.5 34 95-128 2-37 (148)
140 COG4891 Uncharacterized conser 70.4 16 0.00034 33.4 6.6 71 347-419 20-92 (93)
141 cd08896 SRPBCC_CalC_Aha1-like_ 70.0 4.3 9.4E-05 37.9 3.2 29 96-124 2-30 (146)
142 PF09366 DUF1997: Protein of u 66.2 1.2E+02 0.0026 29.5 12.3 101 316-419 28-146 (158)
143 cd08909 START_STARD13-like C-t 66.0 36 0.00078 35.0 9.1 39 78-116 34-74 (205)
144 cd08875 START_ArGLABRA2_like C 64.7 1.9E+02 0.0041 30.4 14.8 39 276-314 61-100 (229)
145 PF08327 AHSA1: Activator of H 64.5 3.9 8.6E-05 36.2 1.7 20 103-122 1-20 (124)
146 cd07826 SRPBCC_CalC_Aha1-like_ 63.7 7.1 0.00015 36.5 3.3 30 96-125 2-31 (142)
147 TIGR00637 ModE_repress ModE mo 62.1 4.6 0.0001 36.6 1.6 39 516-561 8-46 (99)
148 smart00501 BRIGHT BRIGHT, ARID 60.2 7.7 0.00017 34.3 2.7 45 482-530 2-50 (93)
149 PF10698 DUF2505: Protein of u 59.5 37 0.0008 32.9 7.5 42 130-171 114-155 (159)
150 cd08805 Death_ank1 Death domai 59.4 4.6 0.0001 35.9 1.1 64 526-592 17-84 (84)
151 PRK10676 DNA-binding transcrip 56.2 4.9 0.00011 42.4 0.9 44 511-561 18-61 (263)
152 cd08900 SRPBCC_CalC_Aha1-like_ 53.3 14 0.00029 34.4 3.3 26 99-124 5-30 (143)
153 PF01471 PG_binding_1: Putativ 51.5 34 0.00073 27.1 4.8 36 543-580 20-55 (57)
154 smart00501 BRIGHT BRIGHT, ARID 49.4 15 0.00033 32.4 2.8 47 554-601 5-51 (93)
155 PF13309 HTH_22: HTH domain 45.0 18 0.00039 30.3 2.4 47 554-606 2-54 (64)
156 cd08317 Death_ank Death domain 42.1 22 0.00047 31.1 2.5 64 526-592 17-84 (84)
157 cd08803 Death_ank3 Death domai 41.2 20 0.00042 31.9 2.1 64 526-592 17-84 (84)
158 KOG3177 Oligoketide cyclase/li 39.8 1E+02 0.0022 32.3 7.1 28 101-128 75-102 (227)
159 PTZ00220 Activator of HSP-90 A 39.3 16 0.00034 34.2 1.3 21 102-122 1-21 (132)
160 PF11687 DUF3284: Domain of un 38.6 1.9E+02 0.0041 27.0 8.4 41 347-388 63-103 (120)
161 PF01388 ARID: ARID/BRIGHT DNA 37.7 44 0.00096 29.1 3.9 50 553-603 8-57 (92)
162 PF02954 HTH_8: Bacterial regu 37.7 43 0.00094 25.5 3.3 31 579-609 2-33 (42)
163 PRK03601 transcriptional regul 37.1 21 0.00046 36.6 2.0 23 516-538 7-29 (275)
164 cd08804 Death_ank2 Death domai 37.0 29 0.00064 30.6 2.6 62 527-592 18-84 (84)
165 KOG1739 Serine/threonine prote 35.1 85 0.0018 36.5 6.3 173 238-425 402-608 (611)
166 PF09862 DUF2089: Protein of u 34.6 85 0.0018 29.7 5.3 71 482-593 30-100 (113)
167 cd08779 Death_PIDD Death Domai 34.5 43 0.00094 29.6 3.3 64 526-592 15-83 (86)
168 PF00730 HhH-GPD: HhH-GPD supe 34.3 77 0.0017 28.1 4.9 41 552-597 11-51 (108)
169 PRK10236 hypothetical protein; 33.0 2.8E+02 0.0061 29.5 9.3 64 476-561 56-119 (237)
170 PF00407 Bet_v_1: Pathogenesis 32.1 85 0.0019 30.4 5.1 46 94-139 4-59 (151)
171 PRK10837 putative DNA-binding 31.3 35 0.00075 34.8 2.5 21 517-537 10-30 (290)
172 PRK09986 DNA-binding transcrip 30.6 37 0.00081 34.6 2.5 40 514-560 11-50 (294)
173 PF00249 Myb_DNA-binding: Myb- 29.8 50 0.0011 25.5 2.6 20 516-535 11-32 (48)
174 PF03444 HrcA_DNA-bdg: Winged 29.3 1.2E+02 0.0026 27.0 5.0 47 525-585 24-76 (78)
175 PRK11242 DNA-binding transcrip 28.2 39 0.00085 34.5 2.2 21 517-537 8-28 (296)
176 TIGR03339 phn_lysR aminoethylp 27.4 42 0.0009 33.8 2.2 21 517-537 4-24 (279)
177 PRK01905 DNA-binding protein F 27.1 2E+02 0.0042 24.8 6.0 34 576-609 31-65 (77)
178 PRK09791 putative DNA-binding 26.1 43 0.00093 34.6 2.1 22 517-538 12-33 (302)
179 PRK11139 DNA-binding transcrip 26.0 40 0.00087 34.7 1.9 21 517-537 13-33 (297)
180 TIGR02424 TF_pcaQ pca operon t 25.0 46 0.001 34.2 2.1 22 517-538 10-31 (300)
181 PF00531 Death: Death domain; 24.7 49 0.0011 27.7 1.8 66 524-593 12-81 (83)
182 CHL00180 rbcR LysR transcripti 24.7 52 0.0011 34.2 2.4 22 517-538 12-33 (305)
183 PRK13348 chromosome replicatio 24.6 51 0.0011 33.9 2.3 22 516-537 8-29 (294)
184 PF14549 P22_Cro: DNA-binding 24.6 64 0.0014 27.1 2.4 21 518-538 3-23 (60)
185 PRK00430 fis global DNA-bindin 23.8 1.5E+02 0.0032 26.9 4.8 55 553-608 26-82 (95)
186 PRK11482 putative DNA-binding 22.4 2E+02 0.0042 30.5 6.2 47 516-576 35-87 (317)
187 PF14549 P22_Cro: DNA-binding 21.6 80 0.0017 26.5 2.4 21 589-609 4-24 (60)
188 cd00056 ENDO3c endonuclease II 21.1 1.8E+02 0.0039 27.5 5.2 49 480-534 12-60 (158)
189 PF01955 CbiZ: Adenosylcobinam 20.9 37 0.00081 34.4 0.4 48 524-579 17-67 (191)
190 cd08777 Death_RIP1 Death Domai 20.7 1.4E+02 0.0029 26.6 3.9 66 526-593 15-85 (86)
191 smart00005 DEATH DEATH domain, 20.0 82 0.0018 26.9 2.3 66 525-593 18-87 (88)
No 1
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.90 E-value=2e-22 Score=184.76 Aligned_cols=141 Identities=44% Similarity=0.737 Sum_probs=124.1
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeC--CCeEEEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH--EQEISFE 354 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~p--prrIsfr 354 (663)
|++++.|+|||++||++|+|+++||+|+|.|.+++++++.++..++++.+..+++...+..++++++.+.+ ++.+.|.
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~ 80 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFE 80 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEE
Confidence 46899999999999999999999999999999999998877777777766665555456666677766644 6899999
Q ss_pred EEecCCceeEEEEEEEEcCC-CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 355 QVEGDFDSFQGKWLFEQLGS-HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 355 ~VeGdFr~f~G~WtLeplgd-GgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
+++|+|..+.|.|+|++.++ ++|+|+|+++++|. +++|.++++.++++.+..+|++||++||+
T Consensus 81 ~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~--~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 81 MVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPD--FFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999987 68999999999985 57999999999999999999999999985
No 2
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.85 E-value=2.6e-20 Score=170.87 Aligned_cols=135 Identities=22% Similarity=0.380 Sum_probs=114.5
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEE-eccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041 278 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQEISFEQV 356 (663)
Q Consensus 278 rasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~-g~~gll~~~~~~rvVLDV~E~pprrIsfr~V 356 (663)
+.++.|+||+++||++++|+++||+|+|+|.+++++++.++...++.. +..+ +-..+..+ +...++++|.|.++
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~i~~~~~ 76 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGG-IRESFTSR----VTLVPPESIEAELV 76 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeecc-ccEEEEEE----EEecCCCEEEEEec
Confidence 578999999999999999999999999999999999988776544432 3222 12334443 33346889999999
Q ss_pred ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 357 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 357 eGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
+|+|+.++|.|+|++.++|+|+|+|.++++|+ +++|.++++.++.+.+..+|.+|+++|++
T Consensus 77 ~g~~~~~~g~w~~~p~~~~~T~v~~~~~~~~~--~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 77 DGPFKHLEGEWRFKPLGENACKVEFDLEFEFK--SRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred CCChhhceeEEEEEECCCCCEEEEEEEEEEEC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999889999999999995 78999999999999999999999999976
No 3
>PRK10724 hypothetical protein; Provisional
Probab=99.84 E-value=1.1e-19 Score=175.00 Aligned_cols=141 Identities=15% Similarity=0.272 Sum_probs=125.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEE-EEeccceeEEEEEEEEEEEEeeeCCCeEEEE
Q 006041 276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQHEQEISFE 354 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~-q~g~~gll~~~~~~rvVLDV~E~pprrIsfr 354 (663)
+++.+++|++|+++||+++.|+++||+|+|+|++++|+++.++..+.. ..++.++ ...|++++++ .++++|.|.
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~-~~~f~srv~~----~~~~~I~~~ 90 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGI-SKTFTTRNQL----TSNQSILMQ 90 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCc-cEEEEEEEEe----cCCCEEEEE
Confidence 689999999999999999999999999999999999999988876554 4566664 4677776554 477899999
Q ss_pred EEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041 355 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 423 (663)
Q Consensus 355 ~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~ 423 (663)
+++|+|+.+.|.|+|+|.++++|+|+|.++++++ .+++..+++.++.+....+++||++||+++|+.
T Consensus 91 ~~~GpF~~l~g~W~f~p~~~~~t~V~~~l~fef~--s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg~ 157 (158)
T PRK10724 91 LVDGPFKKLIGGWKFTPLSQEACRIEFHLDFEFT--NKLIELAFGRVFKELASNMVQAFTVRAKEVYSA 157 (158)
T ss_pred ecCCChhhccceEEEEECCCCCEEEEEEEEEEEc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998778999999999984 789999999999999999999999999999874
No 4
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.77 E-value=1.5e-17 Score=152.18 Aligned_cols=137 Identities=23% Similarity=0.357 Sum_probs=109.9
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEE--EEEeccceeEEEEEEEEEEEEeeeC-CCeEEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI--LQEGCKGLLYMVLHARVVMDICEQH-EQEISF 353 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv--~q~g~~gll~~~~~~rvVLDV~E~p-prrIsf 353 (663)
++.+++|+||+++||++|+|+++||+|+|+ .+++++...++...+ +..+..+.. +.+... ....+ +++|.|
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~----~~~~~~~~~i~~ 74 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSV-HTWTSR----RVLDPEGRRIVF 74 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcE-EEEEEE----EEEcCCCCEEEE
Confidence 357899999999999999999999999999 888888765554323 344434432 334322 12234 789999
Q ss_pred EEEe--cCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 354 EQVE--GDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 354 r~Ve--GdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
.+.. |+|..+.|.|+|++.++++|+|+|++++++....+++..++.+.+.+.+..+|++||+++|.
T Consensus 75 ~~~~~~~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 75 RQEEPPPPVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred EEeeCCCChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 9987 88899999999999987789999999999864456788899999999999999999999984
No 5
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.74 E-value=1e-16 Score=151.92 Aligned_cols=139 Identities=17% Similarity=0.375 Sum_probs=110.3
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEE---EeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ---EGCKGLLYMVLHARVVMDICEQHEQEISF 353 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q---~g~~gll~~~~~~rvVLDV~E~pprrIsf 353 (663)
++.+|+|+|||++||++++|+++||+|+|.|++++++++.+....... ....+. ...|+++++++ .+..+|.|
T Consensus 3 ~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~-~~~w~s~~~~~---~~~~~i~~ 78 (146)
T cd08860 3 TDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGT-VWSWVSERTLD---PVNRTVRA 78 (146)
T ss_pred ceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCE-EEEEEEEEEec---CCCcEEEE
Confidence 567999999999999999999999999999999999998766543321 111333 35565543332 23456888
Q ss_pred EEE-ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041 354 EQV-EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 420 (663)
Q Consensus 354 r~V-eGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr 420 (663)
+.. .|+|..+.|.|+|++.++| |+|+|.++++...+.+++..++.+.+.+++...|++||++||+.
T Consensus 79 ~~~~~~p~~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~~ 145 (146)
T cd08860 79 RRVETGPFAYMNIRWEYTEVPEG-TRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEAA 145 (146)
T ss_pred EEecCCCcceeeeeEEEEECCCC-EEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhhc
Confidence 433 4789999999999999775 99999999997644577788999999999999999999999974
No 6
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.73 E-value=4.6e-17 Score=147.07 Aligned_cols=125 Identities=34% Similarity=0.581 Sum_probs=102.7
Q ss_pred EcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEE-eccceeEEEEEEEEEEEEeeeCCCeEEEEEEecCCc
Q 006041 283 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFD 361 (663)
Q Consensus 283 I~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~-g~~gll~~~~~~rvVLDV~E~pprrIsfr~VeGdFr 361 (663)
|+||+++||++++||++||+|+|+|.+++++++.++.+++... ...+ ....|..+ +.+.++..|.+.++.|+|+
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~g~~~ 75 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGG-IKRSWTSR----VTEDPPERIRFEQISGPFK 75 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTT-TCEEEEEE----EEEECTTTEEEESSETTEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCC-EEEEEEEE----EEEEEeeeeeeeecCCCch
Confidence 7899999999999999999999999999999998886655433 3333 23455554 3344566699999999999
Q ss_pred eeEEEEEEEEcCC----CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHH
Q 006041 362 SFQGKWLFEQLGS----HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIR 414 (663)
Q Consensus 362 ~f~G~WtLeplgd----GgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR 414 (663)
.+.|.|+|++.++ .+|+|+|.++++| ++++|.++++.++++.++.++++||
T Consensus 76 ~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 76 SFEGSWRFEPLGGNEGGTRTRVTYDYEVDP--PGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEEEEETTECCEEEEEEEEEEEEET--SSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEEECCCCcCCCEEEEEEEEEEec--CcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999984 3578888888877 4789999999999999999999986
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.73 E-value=2e-16 Score=142.92 Aligned_cols=134 Identities=19% Similarity=0.295 Sum_probs=106.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEE--EEEE-EeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041 276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV--RILQ-EGCKGLLYMVLHARVVMDICEQHEQEIS 352 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~v--rv~q-~g~~gll~~~~~~rvVLDV~E~pprrIs 352 (663)
+++.++.|+||+++||++|+|+++||+|+|+|.+++++...++.. ..+. .+..+ . ...++.++...++.+|.
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~i~ 77 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYG---I--KDTYALEYTWDGAGSVS 77 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeee---E--EEEEEEEEEEcCCCcEE
Confidence 478999999999999999999999999999999999986543322 1121 12111 1 22333445444567899
Q ss_pred EEEEecC-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041 353 FEQVEGD-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 417 (663)
Q Consensus 353 fr~VeGd-Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA 417 (663)
|+..+|. +..+.|.|+|++.++ +|+|+|++++++. +++|.++++.+.+.....++++|+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~-~t~vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 78 WTLVEGEGNRSQEGSYTLTPKGD-GTRVTFDLTVELT--VPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred EEEecccceeEEEEEEEEEECCC-CEEEEEEEEEEec--CCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 9999876 668899999999987 6999999999984 689999999999999999999999864
No 8
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=99.67 E-value=7.5e-16 Score=146.04 Aligned_cols=141 Identities=20% Similarity=0.361 Sum_probs=121.6
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEE-EEEeccceeEEEEEEEEEEEEeeeCCC-eEEE
Q 006041 276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRI-LQEGCKGLLYMVLHARVVMDICEQHEQ-EISF 353 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv-~q~g~~gll~~~~~~rvVLDV~E~ppr-rIsf 353 (663)
++..+..|+++|+++|+++.|++.||+|+|+|..++|+++.+..+.. ..++.+++- ..|++++++. ++. .|..
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~-e~F~Trv~~~----~~~~~I~~ 77 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIR-ETFTTRVTLK----PTARSIDM 77 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhhee-eeeeeeeeec----Cchhhhhh
Confidence 47788999999999999999999999999999999999998877644 334666642 5566665543 554 8999
Q ss_pred EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCC
Q 006041 354 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGD 423 (663)
Q Consensus 354 r~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~ 423 (663)
..++|+|+.+.|.|+|.|+++++|.|++.+++++. ..+.+.++...+......+.+|+.+||...++.
T Consensus 78 ~l~~GPFk~L~~~W~F~pl~~~~ckV~f~ldfeF~--s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~~ 145 (146)
T COG2867 78 KLIDGPFKYLKGGWQFTPLSEDACKVEFFLDFEFK--SRLLGALIGPVFKRLASKMVEAFEKRAKEVYGL 145 (146)
T ss_pred hhhcCChhhhcCceEEEECCCCceEEEEEEEeeeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999998889999999999985 668888999999999999999999999988764
No 9
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.62 E-value=9.3e-15 Score=132.18 Aligned_cols=133 Identities=22% Similarity=0.311 Sum_probs=102.9
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 356 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~V 356 (663)
|+.++.|+||+++||++++|+++||+|+|++.+++++.+.+....+ ....+ ....+..+++ ...+++.|.|...
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~g-~~~~~~~~v~---~~~~~~~i~~~~~ 75 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKA--KGPAG-LSVEWDAEIT---EQVPNERIAWRSV 75 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEE--ecCCC-CcEEEEEEEe---ccCCCCEEEEEEC
Confidence 6789999999999999999999999999999999988653222222 11112 1233444321 1246778999988
Q ss_pred ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccch----HHHHHHHHHhhHHHHHHHHHHHHH
Q 006041 357 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLS----EAIMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 357 eGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP----~~L~er~vre~L~~~L~ALR~RAE 418 (663)
.|.+ .+.|.|+|++.++++|+|+|+++++|. .+++ ..+++..+++.+...|+.||+.||
T Consensus 76 ~~~~-~~~~~~~f~~~~~~~T~vt~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 76 EGAD-PNAGSVRFRPAPGRGTRVTLTIEYEPP--GGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred CCCC-CcceEEEEEECCCCCeEEEEEEEEECC--cchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 8887 889999999988778999999999985 3333 456889999999999999999987
No 10
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.59 E-value=7.7e-14 Score=135.77 Aligned_cols=164 Identities=15% Similarity=0.248 Sum_probs=119.3
Q ss_pred CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCC
Q 006041 239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN 318 (663)
Q Consensus 239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn 318 (663)
-+|++.++.+|+ +||.+... +++.+.++++++|++|+++||+++.|++.||+|.|+|..++++++.++
T Consensus 17 ~~W~~~~~~~~v-------~v~~~~~~-----~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~ 84 (195)
T cd08876 17 GDWQLVKDKDGI-------KVYTRDVE-----GSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDD 84 (195)
T ss_pred CCCEEEecCCCe-------EEEEEECC-----CCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCC
Confidence 369999999999 99999422 233477999999999999999999999999999999999999998665
Q ss_pred -EEEEEEEeccce-e-EEEEEEEEEEEEeeeCCCeEEEEEEe--c--C-------CceeEEEEEEEEcCCCeEEEEEEEE
Q 006041 319 -KVRILQEGCKGL-L-YMVLHARVVMDICEQHEQEISFEQVE--G--D-------FDSFQGKWLFEQLGSHHTLLKYSVE 384 (663)
Q Consensus 319 -~vrv~q~g~~gl-l-~~~~~~rvVLDV~E~pprrIsfr~Ve--G--d-------Fr~f~G~WtLeplgdGgTrVtYtve 384 (663)
....+....... + ...|........ ...+..+.+...+ . + +..+.|.|.|++.++++|+|+|..+
T Consensus 85 ~~~i~~~~~~~p~pvs~Rdfv~~~~~~~-~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~ 163 (195)
T cd08876 85 NERSVYTVIDLPWPVKDRDMVLRSTTEQ-DADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAY 163 (195)
T ss_pred CcEEEEEEEecccccCCceEEEEEEEEE-cCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEE
Confidence 333332211110 0 011111111111 0112333333222 1 1 3577899999999888999999999
Q ss_pred EEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041 385 SKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 417 (663)
Q Consensus 385 ~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA 417 (663)
++|+ +++|.++++.++++.+..++++|+++|
T Consensus 164 ~dp~--g~iP~~lv~~~~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 164 ADPG--GSIPGWLANAFAKDAPYNTLENLRKQL 194 (195)
T ss_pred eCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9985 789999999999999999999999987
No 11
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.55 E-value=1.4e-13 Score=123.16 Aligned_cols=136 Identities=21% Similarity=0.346 Sum_probs=99.7
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCC--EEEEE-EEeccceeEEEEEEEEEEEEee-eCCCeEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN--KVRIL-QEGCKGLLYMVLHARVVMDICE-QHEQEIS 352 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn--~vrv~-q~g~~gll~~~~~~rvVLDV~E-~pprrIs 352 (663)
|+.++.|+||+++||++|+|+++|++|+|.+.+++++...+. +..+. .....+. .+.+..+ +++ .+++.+.
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~-~~~~~~~----v~~~~p~~~~~ 75 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGR-RIELTYE----ITEYEPGRRVV 75 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCc-eEEEEEE----EEEecCCcEEE
Confidence 356889999999999999999999999999999998864322 11221 2222221 1223332 232 4778999
Q ss_pred EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 353 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 353 fr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
|....|++. +.+.|+|++.++ +|+|+|+.++++.....+...++...++..+...|++|++++|+
T Consensus 76 ~~~~~~~~~-~~~~~~~~~~~~-~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 76 FRGSSGPFP-YEDTYTFEPVGG-GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred EEecCCCcc-eEEEEEEEEcCC-ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 998777664 699999999876 69999999998632122345678889999999999999999884
No 12
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.54 E-value=2.4e-13 Score=123.37 Aligned_cols=138 Identities=12% Similarity=0.195 Sum_probs=100.7
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEE-EeccceeEEEEEEEEEEEEee-eCCCeEE
Q 006041 275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICE-QHEQEIS 352 (663)
Q Consensus 275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q-~g~~gll~~~~~~rvVLDV~E-~pprrIs 352 (663)
++++.++.|+|||++||++|+|+++|++|+|+|.+++++.. +...+.. .+..+ +...+... ..+.+ .+++++.
T Consensus 1 m~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~ 75 (144)
T cd05018 1 MKISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP--NEYEATVKLKVGP-VKGTFKGK--VELSDLDPPESYT 75 (144)
T ss_pred CeeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC--CeEEEEEEEEEcc-EEEEEEEE--EEEEecCCCcEEE
Confidence 35889999999999999999999999999999999988752 3332221 12221 11233322 23333 3457888
Q ss_pred EEEEe-cC--CceeEEEEEEEEcCCCeEEEEEEEEEEeccC-ccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041 353 FEQVE-GD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKN-SLLSEAIMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 353 fr~Ve-Gd--Fr~f~G~WtLeplgdGgTrVtYtve~eP~~g-g~LP~~L~er~vre~L~~~L~ALR~RAE 418 (663)
+.... |. +..+.+.|+|++. +++|+|+|++++++++. ..++.++++..+++.+...+++||++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~-~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (144)
T cd05018 76 ITGEGKGGAGFVKGTARVTLEPD-GGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKIG 144 (144)
T ss_pred EEEEEcCCCceEEEEEEEEEEec-CCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 87653 22 5688999999998 56799999999997521 1247888999999999999999998863
No 13
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.54 E-value=2.8e-13 Score=121.52 Aligned_cols=132 Identities=19% Similarity=0.333 Sum_probs=103.4
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC--CEEE-EEEEeccceeEEEEEEEEEEEEee-eCC-Ce
Q 006041 276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN--NKVR-ILQEGCKGLLYMVLHARVVMDICE-QHE-QE 350 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g--n~vr-v~q~g~~gll~~~~~~rvVLDV~E-~pp-rr 350 (663)
+++.++.|+||+++||++++|+++|+.|+|.+.+++++...+ +..+ ++.. .+ ..+..+ +.+ .++ ++
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~--~g---~~~~~~----i~~~~~~~~~ 72 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLK--DG---GTVRER----LLALDDAERR 72 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeC--CC---CEEEEE----ehhcCccCCE
Confidence 478899999999999999999999999999999999887542 2222 2222 11 112222 222 355 89
Q ss_pred EEEEEEec--CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041 351 ISFEQVEG--DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 351 Isfr~VeG--dFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE 418 (663)
|.|....| ++..+.|.|+|++.++++|+|+|++.+++. ++++.++++..+.+.+...|++|+++++
T Consensus 73 i~~~~~~~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 73 YSYRIVEGPLPVKNYVATIRVTPEGDGGTRVTWTAEFDPP--EGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred EEEEecCCCCCcccceEEEEEEECCCCccEEEEEEEEecC--CCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999875 345789999999998878999999999985 3477889999999999999999999875
No 14
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.54 E-value=1.9e-12 Score=116.27 Aligned_cols=136 Identities=21% Similarity=0.332 Sum_probs=103.2
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeC-CCeEEEE
Q 006041 276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQH-EQEISFE 354 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~p-prrIsfr 354 (663)
+++.++.|+||+++||++|+|++++++|.|.+..++++...+......... .+. ..++.++ +++ .+ ++.+.|+
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~g~--~~~~~~i-~~~--~~~~~~~~~~ 76 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRV-AGR--GTVREEI-TEY--DPEPRRITWR 76 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEE-CSC--SEEEEEE-EEE--ETTTTEEEEE
T ss_pred EEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEe-ccc--cceeEEE-EEe--cCCCcEEEEE
Confidence 588999999999999999999999999999999999887444433111111 111 1122221 122 35 7999999
Q ss_pred EEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041 355 QVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 355 ~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE 418 (663)
...+.+..+.+.|+|++.++| |+|+++.++++...+++...++...++..+...|++|++.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~g-t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 77 FVPSGFTNGTGRWRFEPVGDG-TRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EESSSSCEEEEEEEEEEETTT-EEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecceeEEEEEEEEEEcCCC-EEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 864555677999999999876 999999999973345677778999999999999999999987
No 15
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.52 E-value=4.9e-13 Score=123.69 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=99.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee------cCCEEEEEEEeccceeEEEEEEEEEEEEee-eCC
Q 006041 276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR------ENNKVRILQEGCKGLLYMVLHARVVMDICE-QHE 348 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer------~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~pp 348 (663)
.++.++.|+||+++||++++|+++||+|+|++..+..+.. .+.+.++...+........+ .+.+ .++
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~------~v~~~~p~ 76 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEM------EITESVPN 76 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEE------EEEecCCC
Confidence 5889999999999999999999999999999987654322 11122222222221100111 1222 367
Q ss_pred CeEEEEEEe-cCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc--chHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 349 QEISFEQVE-GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL--LSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 349 rrIsfr~Ve-GdFr-~f~G~WtLeplgdGgTrVtYtve~eP~~gg~--LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
+++.|+... |++. .+.+.|+|++.++ +|+|+|++++++....+ +...++.+.+++++...|++||+++|+
T Consensus 77 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~-gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 77 ERIEYELRFIKPFEATNDVEFTLEPVGG-GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred cEEEEEEEecCCccccceEEEEEEEcCC-ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 899999885 6775 7899999999955 69999999998642211 345678999999999999999999985
No 16
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.51 E-value=7.7e-13 Score=119.51 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=100.1
Q ss_pred EEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeec-CCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041 275 RCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRE-NNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF 353 (663)
Q Consensus 275 r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~-gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsf 353 (663)
++++.++.|+||++.||++++|+++|++|+|++.+++++... +.+.++......+ ..+...+ .+ ..+++++.|
T Consensus 1 ~~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~i-~~--~~p~~~~~~ 74 (138)
T cd08862 1 MKFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGL---VRSTFTV-TE--LRPGHSFTW 74 (138)
T ss_pred CEEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCC---CceEEEE-EE--ecCCCEEEE
Confidence 368899999999999999999999999999999999988654 2222332222111 1122221 12 236789999
Q ss_pred EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 354 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 354 r~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
.... +.....+.|+|++.++++|+|+|+.++... ..++...++.+.++..+...|++||+.+|.
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 138 (138)
T cd08862 75 TGPA-PGISAVHRHEFEAKPDGGVRVTTSESLSGP-LAFLFGLFVGKKLRALLPEWLEGLKAAAEQ 138 (138)
T ss_pred EecC-CCEEEEEEEEEEEcCCCcEEEEEEEEeecc-hHHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 8654 333557899999987678999999888742 123446789999999999999999999874
No 17
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=99.45 E-value=1.8e-12 Score=129.99 Aligned_cols=158 Identities=8% Similarity=0.073 Sum_probs=113.9
Q ss_pred CCceeeccc-ccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEeec
Q 006041 239 SKWGVFGQV-CRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRE 316 (663)
Q Consensus 239 ~~W~~~~~~-~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVW-aVLTDyEnyPeWiP~V~sSrVLer~ 316 (663)
++|++.++. +|| +||.+. +.+....+++++.|++|++++| ++|.|.+.+++|+++|.+++++++-
T Consensus 25 ~~W~l~~~~~~gi-------~V~s~~------~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~ 91 (209)
T cd08906 25 ENWKFEKNNDNGD-------TVYTLE------VPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRV 91 (209)
T ss_pred cCCEEEEecCCCC-------EEEEec------cCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeec
Confidence 589999876 999 999984 3332366799999999999998 6999999999999999999999874
Q ss_pred C-CEEEEEEE----------eccceeEEEEEEEEEEEEeeeCCCeEEEE---------EEecCCc---eeEEEEEEEE-c
Q 006041 317 N-NKVRILQE----------GCKGLLYMVLHARVVMDICEQHEQEISFE---------QVEGDFD---SFQGKWLFEQ-L 372 (663)
Q Consensus 317 g-n~vrv~q~----------g~~gll~~~~~~rvVLDV~E~pprrIsfr---------~VeGdFr---~f~G~WtLep-l 372 (663)
+ +...+|.. .++.+....+. ...+..+... ..+|.++ .+.|.|.+.+ .
T Consensus 92 ~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~--------~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~ 163 (209)
T cd08906 92 DDNTLVSYDVAAGAAGGVVSPRDFVNVRRIE--------RRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSAS 163 (209)
T ss_pred cCCcEEEEEEccccccCCCCCCceEEEEEEE--------ecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCC
Confidence 4 33323332 11211111110 1111222111 1112232 4578888776 6
Q ss_pred CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 373 GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 373 gdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
+++.|+|+|.++++|+ |.+|.|++|.++.+.+..++.+||++++.
T Consensus 164 ~~~~t~vt~~~~~Dp~--G~lP~~lvN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 164 NPSVCTFIWILNTDLK--GRLPRYLIHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred CCCceEEEEEEecCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7778999999999995 78999999999999999999999999864
No 18
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.43 E-value=3.6e-12 Score=118.86 Aligned_cols=132 Identities=17% Similarity=0.271 Sum_probs=93.6
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee-cCCE--EEE--EEEeccceeEEEEEEEEEEEEee-eCCCe
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-ENNK--VRI--LQEGCKGLLYMVLHARVVMDICE-QHEQE 350 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer-~gn~--vrv--~q~g~~gll~~~~~~rvVLDV~E-~pprr 350 (663)
+.-+..|+||+++||++++|+++||+|+|+|.+++++.. .+.. .++ ...+..+. ...++. .+++ .+++.
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~----~v~~~~p~~~ 77 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPY-RLRFEL----RVTRIEPLSL 77 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCc-EEEEEE----EEEeecCCcE
Confidence 556788999999999999999999999999999999873 2211 222 11222221 122222 3334 47789
Q ss_pred EEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEecc-----CccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041 351 ISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQK-----NSLLSEAIMEEVIYEDLPSNLCAIRDY 416 (663)
Q Consensus 351 Isfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~-----gg~LP~~L~er~vre~L~~~L~ALR~R 416 (663)
+.|. ..|++.. .++|+|++.++ +|+|+|+.++++.. -.+++..++...+++.+..++++||++
T Consensus 78 ~~~~-~~g~~~~-~~~~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 78 LEVR-ASGDLEG-VGRWTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EEEE-EEEeeeE-EEEEEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 9997 4677765 79999999765 69999999999631 124556677777778888888888875
No 19
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.40 E-value=1.7e-11 Score=110.11 Aligned_cols=137 Identities=16% Similarity=0.147 Sum_probs=99.2
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEE-eecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKIL-SRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 355 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVL-er~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~ 355 (663)
|+.++.|+||+++||++++|+++++.|+|.+..++.. -..|.+.........+.. ..+...+ ++ .+++++|.|..
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~~~-~~~~~~v-~~--~~p~~~~~~~~ 77 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGGPP-RSFKPRV-TE--VEPPRRLAWRG 77 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCCCc-EEEEEEE-EE--EcCCCEeEEEe
Confidence 6789999999999999999999999999999888775 345555544433222111 2222221 12 24679999998
Q ss_pred EecCCc--eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041 356 VEGDFD--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 356 VeGdFr--~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE 418 (663)
..++.. ...+.|+|++.++++|+|+++..+... ..++..+++...+.+++...+++|+..||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 78 GLPFPGLLDGEHSFELEPLGDGGTRFVHRETFSGL-LAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred cCCCCcEeeEEEEEEEEEcCCCcEEEEEeeEEEEE-EhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 776533 467899999986678999998776531 22344567889999999999999999886
No 20
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.38 E-value=1e-11 Score=124.27 Aligned_cols=164 Identities=13% Similarity=0.133 Sum_probs=116.1
Q ss_pred CCceeec-ccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHH-HHHhccCcccccCcCCcEEEEEeec
Q 006041 239 SKWGVFG-QVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVW-NVMTAYETLPEIVPNLAISKILSRE 316 (663)
Q Consensus 239 ~~W~~~~-~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVW-aVLTDyEnyPeWiP~V~sSrVLer~ 316 (663)
++|++.+ +.+|| .||.+..++ ++ ..++++..|++|+++|+ .++.|++++++|+++|.+++++++-
T Consensus 25 ~~W~~~~~~~~gi-------~v~s~~~~~----~~--k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~i 91 (209)
T cd08905 25 EGWKTEIVAENGD-------KVLSKVVPD----IG--KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRI 91 (209)
T ss_pred cCCEEEEecCCCC-------EEEEEEcCC----CC--cEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhc
Confidence 4899996 58999 999986542 33 66889999999999999 8888999999999999999999874
Q ss_pred C-CEEEEEEEeccc----eeEEEEEEEEEEEEeeeCCCeEEE-E--------EEecCCc--eeEEEEEEEEcCC--CeEE
Q 006041 317 N-NKVRILQEGCKG----LLYMVLHARVVMDICEQHEQEISF-E--------QVEGDFD--SFQGKWLFEQLGS--HHTL 378 (663)
Q Consensus 317 g-n~vrv~q~g~~g----ll~~~~~~rvVLDV~E~pprrIsf-r--------~VeGdFr--~f~G~WtLeplgd--GgTr 378 (663)
+ +...+++..... +-..-|...... .......+.. . ..+|.++ ...|.|.|+|+++ +.|+
T Consensus 92 d~~~~i~y~~~~p~p~~~vs~RD~V~~~~~--~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~ 169 (209)
T cd08905 92 GKDTLITHEVAAETAGNVVGPRDFVSVRCA--KRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTK 169 (209)
T ss_pred CCCceEEEEEeccCCCCccCccceEEEEEE--EEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceE
Confidence 4 333334321110 000001110000 0011111111 1 1123333 5689999999965 7899
Q ss_pred EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 379 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 379 VtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
|+|.+.++|+ |.+|.+++|.++.+.+..+|.+||++++.
T Consensus 170 v~~~~~~Dpk--G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 170 LTWLLSIDLK--GWLPKSIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEEEeecCC--CCCCHHHHHHHhHHhHHHHHHHHHHHHhc
Confidence 9999999995 78999999999999999999999999863
No 21
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.35 E-value=1.6e-11 Score=122.62 Aligned_cols=163 Identities=10% Similarity=0.092 Sum_probs=120.1
Q ss_pred CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041 238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN 317 (663)
Q Consensus 238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g 317 (663)
.++|++.++.+|| +||.|... ++....++++..|++|++.+.++|.|.+.|++|+|.|.++++++..+
T Consensus 21 ~~~W~~~~~~~~i-------~v~~r~~~-----~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~ 88 (215)
T cd08877 21 SDGWTLQKESEGI-------RVYYKFEP-----DGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLG 88 (215)
T ss_pred CCCcEEeccCCCe-------EEEEEeCC-----CCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecC
Confidence 3589999999999 99999533 33477899999999999999999999999999999999999887644
Q ss_pred C-EEEEEEE--------eccceeEEEEEEEEEEEEeeeCCCeE--EE-----------------EEEe-cCCc--eeEEE
Q 006041 318 N-KVRILQE--------GCKGLLYMVLHARVVMDICEQHEQEI--SF-----------------EQVE-GDFD--SFQGK 366 (663)
Q Consensus 318 n-~vrv~q~--------g~~gll~~~~~~rvVLDV~E~pprrI--sf-----------------r~Ve-GdFr--~f~G~ 366 (663)
. ...+++. .++.+++ .+.. +..+ .+..+ .. ...+ |..+ .+.|.
T Consensus 89 ~~~~v~y~~~~~PwPv~~RD~v~~-~~~~----~~~~-~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~ 162 (215)
T cd08877 89 RADKVCYLRVDLPWPLSNREAVFR-GFGV----DRLE-ENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYG 162 (215)
T ss_pred CceEEEEEEEeCceEecceEEEEE-EEEE----eeec-cCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecce
Confidence 3 2222322 2222211 1110 1010 11212 11 1122 3332 67899
Q ss_pred EEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 367 WLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 367 WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
|.|+|.+++.|.++|.+.++|+ +.++|.|+++.+.++.+..++.+|++.+++
T Consensus 163 ~~i~p~~~~~t~v~~~~~~DP~-g~~IP~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 163 FVITPISPTKCYLRFVANVDPK-MSLVPKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred EEEEEcCCCCeEEEEEEEcCCC-cccCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999995 345999999999999999999999999875
No 22
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.34 E-value=2.4e-11 Score=122.05 Aligned_cols=166 Identities=11% Similarity=0.127 Sum_probs=112.7
Q ss_pred ccCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee
Q 006041 236 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR 315 (663)
Q Consensus 236 ~~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer 315 (663)
++.++|++.++.+|| +||.+ +.++....+.++.+|++|+++||++|.|.+++++|.+.+.++++++.
T Consensus 19 ~~~~gW~l~~~~~gI-------~Vy~k------~~~~~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~ 85 (205)
T cd08874 19 QATAGWSYQCLEKDV-------VIYYK------VFNGTYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKT 85 (205)
T ss_pred hccCCcEEEecCCCE-------EEEEe------cCCCCcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeee
Confidence 445799999999999 99999 33444456888999999999999999999999999999999999987
Q ss_pred cCCEEE-EEEEecccee----EEEEEEEEEEEEeeeCCCeEEEEEEe---------cCCc--eeEEEEEEEEc---CCCe
Q 006041 316 ENNKVR-ILQEGCKGLL----YMVLHARVVMDICEQHEQEISFEQVE---------GDFD--SFQGKWLFEQL---GSHH 376 (663)
Q Consensus 316 ~gn~vr-v~q~g~~gll----~~~~~~rvVLDV~E~pprrIsfr~Ve---------GdFr--~f~G~WtLepl---gdGg 376 (663)
-++... ++++.-.... ..-|....+. ..+....-|..+.++ |.++ .+.|.|.++|+ +++.
T Consensus 86 ~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~-~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~ 164 (205)
T cd08874 86 FTEDICLVYLVHETPLCLLKQPRDFCCLQVE-AKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQY 164 (205)
T ss_pred cCCCeEEEEEEecCCCCCCCCCCeEEEEEEE-EECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCc
Confidence 554433 3432111100 0001111000 001111112222222 2233 67899999999 8889
Q ss_pred EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041 377 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 417 (663)
Q Consensus 377 TrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA 417 (663)
|+|+|.++++|+ |+-+|.|++|.++.+.... +..|+.++
T Consensus 165 t~vty~~q~DPg-gg~iP~~l~N~~~~~~p~~-~~~~~~~~ 203 (205)
T cd08874 165 TRVIYIAQVALC-GPDVPAQLLSSLSKRQPLV-IARLALFL 203 (205)
T ss_pred EEEEEEEEECCC-CCCCCHHHHhHHHHhccHH-HHHHHHHh
Confidence 999999999995 3679999999998876543 34444443
No 23
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.32 E-value=5.4e-11 Score=111.00 Aligned_cols=133 Identities=11% Similarity=0.137 Sum_probs=90.1
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEE-EeccceeEEEEEEEEEEEEeee--CCCeEEEE
Q 006041 278 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQ-EGCKGLLYMVLHARVVMDICEQ--HEQEISFE 354 (663)
Q Consensus 278 rasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q-~g~~gll~~~~~~rvVLDV~E~--pprrIsfr 354 (663)
+.++.|+|||++||++|+|+++|+.|+|++...+++. ++...... ....++ ...|..++ ++.+. +++++.+.
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~--~~~~~~~~~~~~g~~-~~~~~~~~--~~~~~~~~~~~~~~~ 76 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG--DDEYKGTVKVKLGPI-SASFKGTA--RLLEDDEAARRAVLE 76 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC--CCeEEEEEEEEEccE-EEEEEEEE--EEEeccCCCcEEEEE
Confidence 5688999999999999999999999999999988753 23322211 122221 23343333 34443 56788776
Q ss_pred EEecCCc-----eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHH---HHHHHHHhhHHHHHHHHHHHHH
Q 006041 355 QVEGDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEA---IMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 355 ~VeGdFr-----~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~---L~er~vre~L~~~L~ALR~RAE 418 (663)
....+.. .....|+|.+. +++|+|+|.+++++. ++++.. ++.+..++.+...+++|++++|
T Consensus 77 ~~g~~~~~~g~~~~~~~~~l~~~-~~gT~v~~~~~~~~~--g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 77 ATGKDARGQGTAEATVTLRLSPA-GGGTRVTVDTDLALT--GKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred EEEecCCCcceEEEEEEEEEEec-CCcEEEEEEEEEEEe--eEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4431111 35668999984 467999999999874 555443 4777777777888888888876
No 24
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.30 E-value=7.3e-11 Score=106.55 Aligned_cols=134 Identities=17% Similarity=0.147 Sum_probs=96.7
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEee-eCCCeEEEEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQEISFEQ 355 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~pprrIsfr~ 355 (663)
+..++.|+||+++||++|+|++++|+|+|++..+.+....|+..+....+..+.. ..+.. ++++ .++++|.|+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~~~g~~-~~~~~----~i~~~~~~~~i~~~~ 76 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTGPDGEE-GWVSG----EVLEVEPPRRLVFTW 76 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEECCCCCE-EeccE----EEEEEcCCCeEEEEe
Confidence 6788999999999999999999999999985555554445554443333222111 11222 2222 4678999998
Q ss_pred EecC---CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 356 VEGD---FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 356 VeGd---Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
..++ +....+.|+|++.++ +|+|+|+.++.+. ..+...+...+++....+|..||+.+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~-~T~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 77 AFSDETPGPETTVTVTLEETGG-GTRLTLTHSGFPE---EDAEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred cccCCCCCCceEEEEEEEECCC-CEEEEEEEEccCh---HhHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 8763 457789999999984 6999999988763 1224567778888999999999999984
No 25
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.30 E-value=8.8e-11 Score=108.45 Aligned_cols=106 Identities=23% Similarity=0.323 Sum_probs=80.6
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCE----EEEE-EEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041 278 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK----VRIL-QEGCKGLLYMVLHARVVMDICEQHEQEIS 352 (663)
Q Consensus 278 rasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~----vrv~-q~g~~gll~~~~~~rvVLDV~E~pprrIs 352 (663)
+.++.|+||+++||++++|.++++.|+|.+.+++++...++. .++. .....++ .+.|..+++ ...+++.+.
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~-~~~w~~~it---~~~p~~~f~ 77 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGI-PQRWTTEIT---EVEPPRRFV 77 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCC-ceEEEEEEE---EEcCCCeEE
Confidence 568899999999999999999999999999999998644322 1121 1111121 134554432 123578999
Q ss_pred EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEec
Q 006041 353 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQ 388 (663)
Q Consensus 353 fr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~ 388 (663)
|.++.|++..+.++|+|++.++ +|+|+++++++++
T Consensus 78 ~~~~~G~~~~w~h~~~f~~~~~-gT~vt~~v~~~~p 112 (137)
T cd07820 78 DEQVSGPFRSWRHTHRFEAIGG-GTLMTDRVEYRLP 112 (137)
T ss_pred EEeccCCchhCEEEEEEEECCC-ceEEEEEEEEeCC
Confidence 9999999998999999999876 6999999999974
No 26
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.28 E-value=2.2e-10 Score=99.15 Aligned_cols=136 Identities=24% Similarity=0.319 Sum_probs=94.5
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEE-eccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041 278 VASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQE-GCKGLLYMVLHARVVMDICEQHEQEISFEQV 356 (663)
Q Consensus 278 rasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~-g~~gll~~~~~~rvVLDV~E~pprrIsfr~V 356 (663)
+.++.|+||+++||++++|+++|++|+|.+..++++............ .........+...++ . ..++..+.|...
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~-~~~~~~~~~~~~ 78 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVT--E-VDPPRPGRFRVT 78 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCccccceEEEE--E-ecCCCceEEEEe
Confidence 568899999999999999999999999999999988754332211111 100001112222221 1 124578888888
Q ss_pred ecCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc-chHHHHHHHHHhhHHHHHHHHHHH
Q 006041 357 EGDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL-LSEAIMEEVIYEDLPSNLCAIRDY 416 (663)
Q Consensus 357 eGdFr-~f~G~WtLeplgdGgTrVtYtve~eP~~gg~-LP~~L~er~vre~L~~~L~ALR~R 416 (663)
.+++. .+.+.|.|++.++++|+|++.+.+.+..... ++..++.+.+++.+...+.+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 79 GGGGGVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred cCCCCcceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 77655 7899999999976579999999999752111 356678888888888888777654
No 27
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.28 E-value=1.9e-10 Score=114.35 Aligned_cols=163 Identities=15% Similarity=0.218 Sum_probs=115.4
Q ss_pred CCceeecccc-cCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHH-HHhccCcccccCcCCcEEEEEeec
Q 006041 239 SKWGVFGQVC-RLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWN-VMTAYETLPEIVPNLAISKILSRE 316 (663)
Q Consensus 239 ~~W~~~~~~~-gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWa-VLTDyEnyPeWiP~V~sSrVLer~ 316 (663)
++|++.++.+ || .||.|... +..+.++++.+|++|+++|++ ++.|++..++|.+.|.+++++++-
T Consensus 24 ~~W~l~~~~~~~i-------~i~~r~~~------~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~ 90 (208)
T cd08868 24 PGWKLEKNTTWGD-------VVYSRNVP------GVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVI 90 (208)
T ss_pred CCceEEEecCCCC-------EEEEEEcC------CCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEe
Confidence 3899999998 99 99999644 223568899999999999985 778999999999999999999875
Q ss_pred CC-EEEEEEEecc---ceeE-EEEEEEEEEEEeeeCCCe--EEEEEE--------ecCCc--eeEEEEEEEEcCC--CeE
Q 006041 317 NN-KVRILQEGCK---GLLY-MVLHARVVMDICEQHEQE--ISFEQV--------EGDFD--SFQGKWLFEQLGS--HHT 377 (663)
Q Consensus 317 gn-~vrv~q~g~~---gll~-~~~~~rvVLDV~E~pprr--Isfr~V--------eGdFr--~f~G~WtLeplgd--GgT 377 (663)
++ ...++..... .++. .-|.. +......+.. |....+ +|.++ .+.|.|.|+|.++ ++|
T Consensus 91 d~~~~i~y~~~~~~~~~~vs~RDfV~---~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t 167 (208)
T cd08868 91 DDNTDISYQVAAEAGGGLVSPRDFVS---LRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKC 167 (208)
T ss_pred cCCcEEEEEEecCcCCCcccccceEE---EEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCce
Confidence 43 3333332111 0000 00000 0000011111 222222 23343 4679999999864 679
Q ss_pred EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 378 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 378 rVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
.|+|.++++|+ |++|.|++|.++...+..++.+||+++++
T Consensus 168 ~v~~~~~~Dp~--G~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 168 NFTWLLNTDLK--GWLPQYLVDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEEEECCC--CCCcceeeehhhHHHHHHHHHHHHHHHhh
Confidence 99999999995 88999999999999999999999999875
No 28
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.26 E-value=3.2e-10 Score=113.78 Aligned_cols=165 Identities=12% Similarity=0.090 Sum_probs=119.1
Q ss_pred CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041 239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSREN 317 (663)
Q Consensus 239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI-~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g 317 (663)
.+|++..+.+|| .||.+... ++....++++..+ ++|+++++++|.|.+..++|.++|.++++++.-+
T Consensus 23 ~~W~~~~~~~gi-------~iy~r~~~-----~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d 90 (222)
T cd08871 23 DGWKLKYNKNNV-------KVWTKNPE-----NSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLN 90 (222)
T ss_pred CCcEEEEcCCCe-------EEEEeeCC-----CCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcC
Confidence 489999999999 99999422 2345678888887 6999999999999999999999999999997743
Q ss_pred C--EEEEEEE-------eccceeEEEEEEEEEEEEeeeCCC-eEEEEE--------EecCCc--eeEEEEEEEEcCCCeE
Q 006041 318 N--KVRILQE-------GCKGLLYMVLHARVVMDICEQHEQ-EISFEQ--------VEGDFD--SFQGKWLFEQLGSHHT 377 (663)
Q Consensus 318 n--~vrv~q~-------g~~gll~~~~~~rvVLDV~E~ppr-rIsfr~--------VeGdFr--~f~G~WtLeplgdGgT 377 (663)
. .+..+.. +++-++...+ ...... .+.... .+|.++ .+.+.|.|++.++++|
T Consensus 91 ~~~~i~y~~~~~P~pvs~RDfV~~r~~--------~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t 162 (222)
T cd08871 91 PNNDIGYYSAKCPKPLKNRDFVNLRSW--------LEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGC 162 (222)
T ss_pred CCCEEEEEEeECCCCCCCCeEEEEEEE--------EeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCE
Confidence 3 3322211 1221111000 001111 111111 123344 4578899999988889
Q ss_pred EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 006041 378 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS 425 (663)
Q Consensus 378 rVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~~~ 425 (663)
+|+|..+++|+ |++|.+++|.++....+.+|++|++.+++...=+.
T Consensus 163 ~vt~~~~~Dp~--G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~ 208 (222)
T cd08871 163 TLTYVTQNDPK--GSLPKWVVNKATTKLAPKVMKKLHKAALKYPEWKA 208 (222)
T ss_pred EEEEEEecCCC--CCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999984 78999999999999999999999999998755433
No 29
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.24 E-value=4.2e-10 Score=112.70 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=113.9
Q ss_pred CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcc--cccCcCCcEEEEEee
Q 006041 238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETL--PEIVPNLAISKILSR 315 (663)
Q Consensus 238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEny--PeWiP~V~sSrVLer 315 (663)
.++|++.++.+|| +||.|.+. ++.|.. ++++.+|++++++|+++|.|.+++ ++|.+.|.+++++++
T Consensus 21 ~~~W~~~~~~~~i-------~v~~~~~~---~~~~~~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~ 88 (208)
T cd08903 21 ESGWKTCRRTNEV-------AVSWRPSA---EFAGNL--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEA 88 (208)
T ss_pred ccCCEEEEcCCCE-------EEEeeecC---CCCCcE--EEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEE
Confidence 3589999999999 99999543 233433 779999999999999999999887 999999999999988
Q ss_pred cCC-EEEEEEEeccc---ee-EEEEEEEEEEEEeeeCCCeEEEE--EEe--------cCCce----eEEEEEEEEcCCCe
Q 006041 316 ENN-KVRILQEGCKG---LL-YMVLHARVVMDICEQHEQEISFE--QVE--------GDFDS----FQGKWLFEQLGSHH 376 (663)
Q Consensus 316 ~gn-~vrv~q~g~~g---ll-~~~~~~rvVLDV~E~pprrIsfr--~Ve--------GdFr~----f~G~WtLeplgdGg 376 (663)
-++ ...++...-.. ++ ..-|....... ...+..+... .++ |.++. +.|.|+..+.++++
T Consensus 89 id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~--~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~ 166 (208)
T cd08903 89 ISDDVSVCRTVTPSAAMKIISPRDFVDVVLVK--RYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDK 166 (208)
T ss_pred ecCCEEEEEEecchhcCCCcCCCceEEEEEEE--ecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCc
Confidence 544 33333311000 00 00011100000 1122223221 222 22332 45666666656678
Q ss_pred EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 377 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 377 TrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
|.|+|.+.++|+ |.+|.++++.++.+.+..++.+||+.+.+
T Consensus 167 t~v~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 167 TQLVSFFQTDLS--GYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred eEEEEEEEeccC--CCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 999999999995 78999999999999999999999998754
No 30
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.23 E-value=2.6e-10 Score=114.00 Aligned_cols=160 Identities=13% Similarity=0.043 Sum_probs=116.3
Q ss_pred CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041 239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKILSREN 317 (663)
Q Consensus 239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI-~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g 317 (663)
++|++..+.+|| +||.|... +.+...+++..++ ++|++++++++.|.+..++|.+.+.+++++++..
T Consensus 21 ~~W~l~~~~~~i-------~Vy~r~~~-----~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~ 88 (207)
T cd08911 21 DGWEPFIEKKDM-------LVWRREHP-----GTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDP 88 (207)
T ss_pred CCcEEEEEcCce-------EEEEeccC-----CCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccC
Confidence 479999999999 99999432 1335568887767 8999999999999999999999999999998742
Q ss_pred --CEEEEEEE--------eccceeEEEEEEEEEEEEeeeCCCe--EEEEEEe--------cCCc--eeEEEEEEEEcC--
Q 006041 318 --NKVRILQE--------GCKGLLYMVLHARVVMDICEQHEQE--ISFEQVE--------GDFD--SFQGKWLFEQLG-- 373 (663)
Q Consensus 318 --n~vrv~q~--------g~~gll~~~~~~rvVLDV~E~pprr--Isfr~Ve--------GdFr--~f~G~WtLeplg-- 373 (663)
+...+++. .++.+ +..+ +.... .... |....++ |.++ .+.|.|.+++.+
T Consensus 89 ~~~~~i~y~~~~~P~P~s~RD~V----~~r~--~~~~~-~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~ 161 (207)
T cd08911 89 ETGSEIIYWEMQWPKPFANRDYV----YVRR--YIIDE-ENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSF 161 (207)
T ss_pred CCCCEEEEEEEECCCCCCCccEE----EEEE--EEEcC-CCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCC
Confidence 32223332 11211 1111 11111 1112 2222222 3444 679999999983
Q ss_pred -CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 374 -SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 374 -dGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
+++|.++|..+.+| +|.+|.+++|.+..+.++.+|+.|++.+.+
T Consensus 162 ~~~~~~~~~~~~~dP--gG~IP~~lvN~~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 162 DEPGFEFVLTYFDNP--GVNIPSYITSWVAMSGMPDFLERLRNAALK 206 (207)
T ss_pred CCCCeEEEEEEEeCC--CCccCHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 56799999999998 488999999999999999999999998865
No 31
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.17 E-value=1.4e-09 Score=108.61 Aligned_cols=159 Identities=8% Similarity=0.048 Sum_probs=116.2
Q ss_pred CCceeeccccc----CCCCcccceEEEEeeccccccCCeeEEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEE
Q 006041 239 SKWGVFGQVCR----LDRPCFVDEVHLRRFDGLLENGGVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKIL 313 (663)
Q Consensus 239 ~~W~~~~~~~g----i~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI-~APpeqVWaVLTDyEnyPeWiP~V~sSrVL 313 (663)
+.|+...+.+| | +||.|... +.+...+++..++ ++|+++|+++|.|.+..++|.+.|.+.+++
T Consensus 22 ~~W~~~~~k~~~~~~i-------~vy~r~~~-----~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~l 89 (209)
T cd08870 22 QAWQQVMDKSTPDMSY-------QAWRRKPK-----GTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETL 89 (209)
T ss_pred CcceEhhhccCCCceE-------EEEecccC-----CCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEE
Confidence 58999999999 9 99999422 2335679999999 569999999999999999999999999999
Q ss_pred eecCC--EEEEEEE--------eccceeEEEEEEEEEEEEeeeCCCe--EEEEEEe-------cCCc--eeEEEEEEEEc
Q 006041 314 SRENN--KVRILQE--------GCKGLLYMVLHARVVMDICEQHEQE--ISFEQVE-------GDFD--SFQGKWLFEQL 372 (663)
Q Consensus 314 er~gn--~vrv~q~--------g~~gll~~~~~~rvVLDV~E~pprr--Isfr~Ve-------GdFr--~f~G~WtLepl 372 (663)
+..++ ...+++. .++-++...+ ....+.. |....+. |.++ .+.|.|.+++.
T Consensus 90 e~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~--------~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~ 161 (209)
T cd08870 90 EEDEKSGTEIVRWVKKFPFPLSDREYVIARRL--------WESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAV 161 (209)
T ss_pred EecCCCCcEEEEEEEECCCcCCCceEEEEEEE--------EEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEe
Confidence 87654 2223322 1221111100 0110111 1111111 3332 78999999998
Q ss_pred --CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 373 --GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 373 --gdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
++++|.++|+...+|+ |.+|.|++|.++...++.+|++|++.+.+
T Consensus 162 ~~~~~~t~~~~~~~~dp~--G~IP~wlvN~~~~~~~~~~l~~l~~a~~~ 208 (209)
T cd08870 162 KGDGQGSACEVTYFHNPD--GGIPRELAKLAVKRGMPGFLKKLENALRK 208 (209)
T ss_pred cCCCCceEEEEEEEECCC--CCCCHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 7788999999999984 77999999999999999999999998854
No 32
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=99.16 E-value=8.1e-10 Score=109.69 Aligned_cols=164 Identities=16% Similarity=0.096 Sum_probs=111.7
Q ss_pred ccCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee
Q 006041 236 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR 315 (663)
Q Consensus 236 ~~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer 315 (663)
+..++|.+..+.+|| +||.+...+ +...+.++++..|+|++++|++++.|.. ++|.+++.+++++++
T Consensus 16 ~~~~~W~~~~~~~gi-------~I~~k~~~~----~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~ 82 (197)
T cd08869 16 DKSKGWVSVSSSDHV-------ELAFKKVDD----GHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVET 82 (197)
T ss_pred hccCCceEEecCCcE-------EEEEEeCCC----CCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEE
Confidence 446799999999999 999995421 2235678999999999999999998863 999999999999987
Q ss_pred cCC-EEEEEEE-ec-cceeEEEEEEEEEEEEeeeCCC--eEEEEEEe-------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 006041 316 ENN-KVRILQE-GC-KGLLYMVLHARVVMDICEQHEQ--EISFEQVE-------GDFD--SFQGKWLFEQLGSHHTLLKY 381 (663)
Q Consensus 316 ~gn-~vrv~q~-g~-~gll~~~~~~rvVLDV~E~ppr--rIsfr~Ve-------GdFr--~f~G~WtLeplgdGgTrVtY 381 (663)
-++ ...+++. .. .++...-|...... ....+.. .|.+..++ |.++ .+.|.|.++|+++++|+|+|
T Consensus 83 id~~~~i~y~~~~~p~pv~~RDfV~~r~~-~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty 161 (197)
T cd08869 83 LDEDTEVYQYVTNSMAPHPTRDYVVLRTW-RTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTH 161 (197)
T ss_pred ecCCcEEEEEEeeCCCCCCCceEEEEEEE-EecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEE
Confidence 543 2233332 11 01100001110000 0001111 23444442 4444 55799999999888999999
Q ss_pred EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041 382 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 416 (663)
Q Consensus 382 tve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R 416 (663)
.++++|+ |.+|.|++|..- .-+...|..||+-
T Consensus 162 ~~~~Dp~--G~iP~wl~N~~~-~~~~~~~~~l~~~ 193 (197)
T cd08869 162 ICRVDLR--GRSPEWYNKVYG-HLCARELLRIRDS 193 (197)
T ss_pred EEEECCC--CCCCceeecchH-hHHHHHHHHHHhh
Confidence 9999995 789999955554 7788999999874
No 33
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.15 E-value=5.3e-10 Score=111.97 Aligned_cols=159 Identities=8% Similarity=0.035 Sum_probs=112.7
Q ss_pred CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEee--
Q 006041 239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSR-- 315 (663)
Q Consensus 239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~-APpeqVWaVLTDyEnyPeWiP~V~sSrVLer-- 315 (663)
++|++..+.+|| +||.|... +.+...+++..+++ ++++++++++.|.+.+++|.+.|.++ ++.
T Consensus 25 ~~W~l~~~~~~i-------~Vy~r~~~-----~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~--~~~~~ 90 (207)
T cd08910 25 AAWELLVESSGI-------SIYRLLDE-----QSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKEL--YEKEC 90 (207)
T ss_pred CCeEEEEecCCe-------EEEEeccC-----CCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhh--eeecC
Confidence 489999999999 99998422 23355799999998 79999999999999999999999873 333
Q ss_pred cCCEEEEEEE-------eccceeEEEEEEEEEEEEeeeCCCeE---E--------EEEEecCCc--eeEEEEEEEEcCCC
Q 006041 316 ENNKVRILQE-------GCKGLLYMVLHARVVMDICEQHEQEI---S--------FEQVEGDFD--SFQGKWLFEQLGSH 375 (663)
Q Consensus 316 ~gn~vrv~q~-------g~~gll~~~~~~rvVLDV~E~pprrI---s--------fr~VeGdFr--~f~G~WtLeplgdG 375 (663)
.+..+..+.. .++-++...+. .. ....+.+ . +...+|.++ .+.|.|.|++.+++
T Consensus 91 ~~~~i~y~~~k~PwPvs~RD~V~~r~~~-----~~-~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~ 164 (207)
T cd08910 91 DGETVIYWEVKYPFPLSNRDYVYIRQRR-----DL-DVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKK 164 (207)
T ss_pred CCCEEEEEEEEcCCCCCCceEEEEEEec-----cc-cCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCC
Confidence 2223322211 12211100000 00 0011111 0 111234444 78999999999888
Q ss_pred eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 376 HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 376 gTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
+|+++|..+.+|+ |.+|.|++|.+..+.++.+|++|+..+.+
T Consensus 165 ~t~i~~~~~~DPg--G~IP~wlvN~~~~~~~~~~l~~l~ka~~~ 206 (207)
T cd08910 165 GSKVFMYYFDNPG--GMIPSWLINWAAKNGVPNFLKDMQKACQN 206 (207)
T ss_pred ceEEEEEEEeCCC--CcchHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 8999999999994 88999999999999999999999998864
No 34
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.15 E-value=7.6e-10 Score=101.56 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=88.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEe-----ecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041 276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS-----RENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQE 350 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLe-----r~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr 350 (663)
+++.++.|+|||+.||++++|+++||+|+|......+.. +.|+..++..... +. .+.+..+++ + ..++++
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-g~-~~~~~~~v~-~--~~p~~~ 75 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRLD-GG-PYRITNHVV-A--FEENRL 75 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEcC-CC-ceEEEEEEE-E--ECCCCE
Confidence 378899999999999999999999999998643322221 2333333332221 21 133443322 2 247789
Q ss_pred EEEEEEe-c-CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHH--HHHHHHhhHHHHHHHHHHHHH
Q 006041 351 ISFEQVE-G-DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAI--MEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 351 Isfr~Ve-G-dFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L--~er~vre~L~~~L~ALR~RAE 418 (663)
|.|.... + ........|+|++.++++|+|+++..+... .....+ +......++...|..|++.+|
T Consensus 76 l~~~~~~~~~~~~~~~~~~~l~~~~~g~T~vt~~~~~~g~---~~~~~~~~~~~~~~~g~~~~l~~L~~~~~ 144 (144)
T cd07825 76 IAWRPGPAGQEPGGHRWRWELEPIGPGRTRVTETYDWSAV---TDLKELLGFPAFPEVQLEASLDRLATLAE 144 (144)
T ss_pred EEEEccCCCCCCCceeEEEEEEECCCCcEEEEEEEeccCC---hhhhhccccCCCCHHHHHHHHHHHHHHhC
Confidence 9998652 2 223557788999988778999999887642 111222 234467788899999998875
No 35
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=99.13 E-value=1.2e-09 Score=112.38 Aligned_cols=162 Identities=7% Similarity=0.032 Sum_probs=106.9
Q ss_pred CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041 238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN 317 (663)
Q Consensus 238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g 317 (663)
.++|.+.++.+|| +||.+. +.....+++++.|++|+++|+++|.|.+++++|.+++.+++++++-+
T Consensus 58 ~~~W~l~~~~~gI-------~Vyt~~-------~s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id 123 (240)
T cd08913 58 KDNWVLSSEKNQV-------RLYTLE-------EDKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVD 123 (240)
T ss_pred cCCCEEEEccCCE-------EEEEEe-------CCCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecC
Confidence 3589999999999 999972 12234678889999999999999999999999999999999998744
Q ss_pred CEEEEEEEeccc----eeEEEEEEEEEEEEeeeCC-C-eEEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 006041 318 NKVRILQEGCKG----LLYMVLHARVVMDICEQHE-Q-EISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY 381 (663)
Q Consensus 318 n~vrv~q~g~~g----ll~~~~~~rvVLDV~E~pp-r-rIsfr~Ve--------GdFr--~f~G~WtLeplgdGgTrVtY 381 (663)
....+++..... +..--|............. . .|.-.++. |.++ .+.|.|.|.+.+++.|+|+|
T Consensus 124 ~~~~vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY 203 (240)
T cd08913 124 EDDAIYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSY 203 (240)
T ss_pred CCcEEEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEE
Confidence 333344421111 0000011100000000001 0 12222222 3333 67899999999988999999
Q ss_pred EEEEEeccCccchHHHHHHHHHhhHH-HHHHHHHHH
Q 006041 382 SVESKMQKNSLLSEAIMEEVIYEDLP-SNLCAIRDY 416 (663)
Q Consensus 382 tve~eP~~gg~LP~~L~er~vre~L~-~~L~ALR~R 416 (663)
..+.+| |.+|.++++.++.+... .++.+--+.
T Consensus 204 ~~~~dP---G~LP~~~~N~~~~~~p~~~~~~~~~~~ 236 (240)
T cd08913 204 YNQATP---GVLPYISTDIAGLSSEFYSTFSACSQF 236 (240)
T ss_pred EEEeCC---ccccHHHhhhhhhccchhHHHHHHHHH
Confidence 999987 38999999999887553 444443333
No 36
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.12 E-value=1.4e-09 Score=111.32 Aligned_cols=172 Identities=13% Similarity=0.156 Sum_probs=119.2
Q ss_pred CceeecccccCCCCcccceEEEEeeccccccCCeeE-EEEEEEEEc-CCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041 240 KWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHR-CVVASITVK-APVSEVWNVMTAYETLPEIVPNLAISKILSREN 317 (663)
Q Consensus 240 ~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r-~VrasIvI~-APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g 317 (663)
+|++..+.+|| +||.|..+ .+|..+ .+++..+|+ ++++++.+++.|.+.+.+|..++.+++++++-+
T Consensus 27 ~W~l~~~~~gi-------kVy~r~~~----~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~ 95 (235)
T cd08872 27 GWQLFAEEGEM-------KVYRREVE----EDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLS 95 (235)
T ss_pred CCEEEEeCCce-------EEEEEECC----CCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecC
Confidence 89999999999 99999533 233333 589999999 999999999999999999999999999998743
Q ss_pred -CEEEEEEE--------eccceeEEEEEE--E----------EEEEEee----eCC--CeEEEEEEe-----cCCceeEE
Q 006041 318 -NKVRILQE--------GCKGLLYMVLHA--R----------VVMDICE----QHE--QEISFEQVE-----GDFDSFQG 365 (663)
Q Consensus 318 -n~vrv~q~--------g~~gll~~~~~~--r----------vVLDV~E----~pp--rrIsfr~Ve-----GdFr~f~G 365 (663)
+...+++. .++.++...+.. . +++.... .|+ ..++..... +.+..-.|
T Consensus 96 ~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g 175 (235)
T cd08872 96 QDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDG 175 (235)
T ss_pred CCCEEEEEEccCCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCC
Confidence 33334442 222221111110 0 1110000 011 122222110 11112237
Q ss_pred EEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 006041 366 KWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS 425 (663)
Q Consensus 366 ~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~~~ 425 (663)
.|.|.+ ++++|+|+|..+++| +|++|.|++|.+.++.++..|+.|-.++.+....+.
T Consensus 176 ~~~~t~-~~~~~~ity~~~~dP--gG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~~~~~~ 232 (235)
T cd08872 176 NQEITR-DNILCKITYVANVNP--GGWAPASVLRAVYKREYPKFLKRFTSYVQEKTKGKP 232 (235)
T ss_pred cccccC-CCCeEEEEEEEEeCC--CCCccHHHHHHHHHhhchHHHHHHHHHHHHhcCCCc
Confidence 799988 577999999999999 489999999999999999999999999987766544
No 37
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.11 E-value=2.9e-10 Score=104.31 Aligned_cols=78 Identities=44% Similarity=0.711 Sum_probs=73.1
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------- 128 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------- 128 (663)
|.+++.|++|++.||++|+||+++.+|+|.+.+
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~ 80 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFE 80 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEE
Confidence 578999999999999999999999999999888
Q ss_pred -----------------c-C-CceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041 129 -----------------R-S-STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 173 (663)
Q Consensus 129 -----------------~-~-~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~ 173 (663)
. + ++|+++|++++.|..++|..+++.++++.++.+|++||++||+
T Consensus 81 ~~~g~~~~~~g~w~~~~~~~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 81 MVEGDFKRFEGSWRLEPLADGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EcCCchhceEEEEEEEECCCCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1 2 4899999999999999999999999999999999999999984
No 38
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.07 E-value=1.5e-08 Score=96.47 Aligned_cols=160 Identities=12% Similarity=0.183 Sum_probs=111.8
Q ss_pred CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCC
Q 006041 239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENN 318 (663)
Q Consensus 239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn 318 (663)
.+|+..++.+|+ +||.+..++ .+...++++.+|++|+++|++++.|.+.++.|.+.+..+++++..++
T Consensus 15 ~~W~~~~~~~~v-------~vy~~~~~~-----~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~ 82 (193)
T cd00177 15 EGWKLVKEKDGV-------KIYTKPYED-----SGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDE 82 (193)
T ss_pred CCeEEEEECCcE-------EEEEecCCC-----CCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCC
Confidence 489999999999 999996442 23567999999999999999999999999999999999999987554
Q ss_pred EE-EEEEEe--ccceeE--EEEEEEEEEEEeeeCCCeEEE--EEEe--------cCCc--eeEEEEEEEEcCCCeEEEEE
Q 006041 319 KV-RILQEG--CKGLLY--MVLHARVVMDICEQHEQEISF--EQVE--------GDFD--SFQGKWLFEQLGSHHTLLKY 381 (663)
Q Consensus 319 ~v-rv~q~g--~~gll~--~~~~~rvVLDV~E~pprrIsf--r~Ve--------GdFr--~f~G~WtLeplgdGgTrVtY 381 (663)
.. .++..- -.++-. +.+... .. ...+..+.+ ..++ |.++ .+.+.|.|++.+++.|+++|
T Consensus 83 ~~~i~~~~~~~p~p~~~Rdfv~~~~-~~---~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~ 158 (193)
T cd00177 83 HTDIIYYKTKPPWPVSPRDFVYLRR-RR---KLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTY 158 (193)
T ss_pred CeEEEEEEeeCCCccCCccEEEEEE-EE---EcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEE
Confidence 22 222211 000000 111100 00 011122222 1221 2233 33678999999888999999
Q ss_pred EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041 382 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 416 (663)
Q Consensus 382 tve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R 416 (663)
...++|+ +.+|.++++..+.+.+...++.++..
T Consensus 159 ~~~~D~~--g~iP~~~~~~~~~~~~~~~~~~~~~~ 191 (193)
T cd00177 159 VLQVDPK--GSIPKSLVNSAAKKQLASFLKDLRKA 191 (193)
T ss_pred EEeeCCC--CCccHHHHHhhhhhccHHHHHHHHHh
Confidence 9999985 78999999999998888887777653
No 39
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=99.05 E-value=1.7e-09 Score=110.95 Aligned_cols=161 Identities=13% Similarity=0.151 Sum_probs=103.2
Q ss_pred CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041 238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN 317 (663)
Q Consensus 238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g 317 (663)
.++|.+..+.+|| +||++ + +.....+++++.+++|+++++++|.|++++++|.+++.+++++++.+
T Consensus 55 ~~~W~l~~dkdgI-------kVytr------~-~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld 120 (236)
T cd08914 55 KSGWEVTSTVEKI-------KIYTL------E-EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVS 120 (236)
T ss_pred cCCCEEEEccCCE-------EEEEe------c-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeC
Confidence 4699999999999 99999 2 22245799999999999999999999999999999999999998744
Q ss_pred CEEEEEEEeccceeEEEEEEEEEEEEee--eC-CC---eEEEEEEe--------cCCc--e-eEEEEEEEEcCCCeEEEE
Q 006041 318 NKVRILQEGCKGLLYMVLHARVVMDICE--QH-EQ---EISFEQVE--------GDFD--S-FQGKWLFEQLGSHHTLLK 380 (663)
Q Consensus 318 n~vrv~q~g~~gll~~~~~~rvVLDV~E--~p-pr---rIsfr~Ve--------GdFr--~-f~G~WtLeplgdGgTrVt 380 (663)
....+++.-........-+ .+++.... .. .. .|..+.+. |.++ . +.|. .|.++++++|+|+
T Consensus 121 ~~~~vY~~~~pPw~Pvk~R-D~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~~~~~~Vt 198 (236)
T cd08914 121 EDDQIYHITCPIVNNDKPK-DLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAIDSNSCTVS 198 (236)
T ss_pred CCcCEEEEecCCCCCCCCc-eEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcCCCcEEEE
Confidence 2222444211110000000 11111110 01 11 12223322 3333 3 6787 9999998999999
Q ss_pred EEEEEEeccCccchHHHHHHH-HHhhHHHHHHHHHHHH
Q 006041 381 YSVESKMQKNSLLSEAIMEEV-IYEDLPSNLCAIRDYV 417 (663)
Q Consensus 381 Ytve~eP~~gg~LP~~L~er~-vre~L~~~L~ALR~RA 417 (663)
|.++++| |++|-|.+|-. ....+..++.+-.+++
T Consensus 199 Y~~~~dP---g~lp~~~~n~~~~~~~~~~~~~~~~~~~ 233 (236)
T cd08914 199 YFNQISA---SILPYFAGNLGGWSKSIEETAASCIQFL 233 (236)
T ss_pred EEEEcCC---ccchheEEecchhhhHHHHHHHHHHHHH
Confidence 9999998 67888763321 2334444444444443
No 40
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=99.03 E-value=2e-09 Score=105.62 Aligned_cols=138 Identities=18% Similarity=0.224 Sum_probs=105.1
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEE
Q 006041 274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISF 353 (663)
Q Consensus 274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsf 353 (663)
...++.+++|++|+++||++..|+|++|.||.++.+++|++... ..|...-...+.+.|.++++-+ .+..+|.|
T Consensus 69 ~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr---SrW~~~ap~g~~v~Wea~it~d---~~~e~I~W 142 (217)
T COG5637 69 PIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR---SRWKANAPLGLEVEWEAEITKD---IPGERIQW 142 (217)
T ss_pred ceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc---cceeEcCCCCceEEEeehhhcc---CCCcEEee
Confidence 34578899999999999999999999999999999999996433 2222222233457788875533 36789999
Q ss_pred EEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHH----hhHHHHHHHHHHHHHh
Q 006041 354 EQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIY----EDLPSNLCAIRDYVEK 419 (663)
Q Consensus 354 r~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vr----e~L~~~L~ALR~RAEk 419 (663)
+.++|.--...|.-+|++..++.|.|+.++.+.|+ +++...++++++. +.+...|+.||..+|.
T Consensus 143 ~Sl~Ga~v~NsG~VrF~~~pg~~t~V~v~lsY~~P--gg~~~a~va~~fgeepeqqI~~DL~RFk~~~e~ 210 (217)
T COG5637 143 ESLPGARVENSGAVRFYDAPGDSTEVKVTLSYRPP--GGLLGAVVAKLFGEEPEQQIQDDLERFKEYQEN 210 (217)
T ss_pred ecCCCCcCCCCccEEeeeCCCCceEEEEEEEecCC--ccHHHHHHHHHhccchHHHHHHHHHHHHHHHHc
Confidence 99999544668999999988888999999999985 3444555555554 5677778888888776
No 41
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=99.03 E-value=6.9e-09 Score=106.51 Aligned_cols=137 Identities=13% Similarity=0.063 Sum_probs=93.8
Q ss_pred CCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecC
Q 006041 238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSREN 317 (663)
Q Consensus 238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~g 317 (663)
.++|++..+.+|| +||.+ + +.....++++..|++|+++|+++|.|.+++++|.+++.+++++++-+
T Consensus 54 ~~~W~l~~~k~gI-------kVytr------~-~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id 119 (235)
T cd08873 54 KSDWTVASSTTSV-------TLYTL------E-QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVG 119 (235)
T ss_pred cCCCEEEEcCCCE-------EEEEe------c-CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeC
Confidence 3599999999999 99999 3 33355688999999999999999999999999999999999998755
Q ss_pred CEEE-EEEEecc--ceeEEEEEEEEEEEEeeeCC--CeEEEEEEe--------cCCc--eeEEEEEEEEcCCCeEEEEEE
Q 006041 318 NKVR-ILQEGCK--GLLYMVLHARVVMDICEQHE--QEISFEQVE--------GDFD--SFQGKWLFEQLGSHHTLLKYS 382 (663)
Q Consensus 318 n~vr-v~q~g~~--gll~~~~~~rvVLDV~E~pp--rrIsfr~Ve--------GdFr--~f~G~WtLeplgdGgTrVtYt 382 (663)
+... +++..-. .+-..-|............. -.|.++.+. |.++ .+.|.|.|.|+++++|.|+|.
T Consensus 120 ~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~ 199 (235)
T cd08873 120 EDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYY 199 (235)
T ss_pred CCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEE
Confidence 4333 3432111 00000011110000000111 123444444 3333 779999999999889999999
Q ss_pred EEEEec
Q 006041 383 VESKMQ 388 (663)
Q Consensus 383 ve~eP~ 388 (663)
.+++|+
T Consensus 200 ~~~dPg 205 (235)
T cd08873 200 NETNPK 205 (235)
T ss_pred EEcCCC
Confidence 999983
No 42
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.03 E-value=2.1e-08 Score=99.65 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=113.3
Q ss_pred CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhc--cCcccccCcCCcEEEEEeec
Q 006041 239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTA--YETLPEIVPNLAISKILSRE 316 (663)
Q Consensus 239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTD--yEnyPeWiP~V~sSrVLer~ 316 (663)
++|.+.++.+|| +||.+.... .....++++..|++++++|+++|.| .+..+.|.+.+.+++++++-
T Consensus 22 ~~W~~~~~~~~i-------~v~~~~~~~-----~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~i 89 (206)
T cd08867 22 DGWKVLKTVKNI-------TVSWKPSTE-----FTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKI 89 (206)
T ss_pred CCcEEEEcCCCc-------EEEEecCCC-----CCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEe
Confidence 589999999999 999994221 1124589999999999999999999 89999999999999999874
Q ss_pred C-CEEEEEEEecc---ceeE-EEEEEEEEEEEe-eeCCC--eEEEEEE--------ecCCc--eeEEEEEEEEcC--CCe
Q 006041 317 N-NKVRILQEGCK---GLLY-MVLHARVVMDIC-EQHEQ--EISFEQV--------EGDFD--SFQGKWLFEQLG--SHH 376 (663)
Q Consensus 317 g-n~vrv~q~g~~---gll~-~~~~~rvVLDV~-E~ppr--rIsfr~V--------eGdFr--~f~G~WtLeplg--dGg 376 (663)
+ +...++...-. +++. .-|. .+... ...+. .+....+ +|.++ ...|-|.++|.+ +++
T Consensus 90 d~~~~i~~~~~p~~~~~~vs~RDfV---~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~ 166 (206)
T cd08867 90 SEDLCVGRTITPSAAMGLISPRDFV---DLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDK 166 (206)
T ss_pred CCCeEEEEEEccccccCccCCcceE---EEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCc
Confidence 4 33333332100 0000 0000 00000 00111 1222333 24444 457889999874 467
Q ss_pred EEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041 377 TLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 417 (663)
Q Consensus 377 TrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA 417 (663)
|.++|.+.++|+ |.+|.++++.++.+.+...+.+||+++
T Consensus 167 t~~~~~~~~Dpk--G~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 167 SFLVLYVQTDLR--GMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred eEEEEEEEeccC--CCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 999999999995 789999999999999999999999875
No 43
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=98.98 E-value=2.5e-08 Score=97.73 Aligned_cols=167 Identities=15% Similarity=0.082 Sum_probs=114.9
Q ss_pred CCceeecc-cccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHH-HHHHHhccCcccccCcCCcEEEEEeec
Q 006041 239 SKWGVFGQ-VCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSE-VWNVMTAYETLPEIVPNLAISKILSRE 316 (663)
Q Consensus 239 ~~W~~~~~-~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeq-VWaVLTDyEnyPeWiP~V~sSrVLer~ 316 (663)
.+|.+..+ .+|+ .+|-+..++ +.....+++...|++++++ +-+++.|.+..++|.+.|.++++++.-
T Consensus 19 ~~W~~~~~~~~~~-------~~~~~~~~~----~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~ 87 (206)
T smart00234 19 PGWVLSSENENGD-------EVRSILSPG----RSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVI 87 (206)
T ss_pred CccEEccccCCcc-------eEEEEccCC----CCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEE
Confidence 48999997 7888 788874221 1235679999999999996 778999999999999999999999874
Q ss_pred CCE--EEEEEEecc--ceeEEEEEEEEEEEEeeeCCC--eEEEEEE--------ecCCc--eeEEEEEEEEcCCCeEEEE
Q 006041 317 NNK--VRILQEGCK--GLLYMVLHARVVMDICEQHEQ--EISFEQV--------EGDFD--SFQGKWLFEQLGSHHTLLK 380 (663)
Q Consensus 317 gn~--vrv~q~g~~--gll~~~~~~rvVLDV~E~ppr--rIsfr~V--------eGdFr--~f~G~WtLeplgdGgTrVt 380 (663)
++. +..+..... .+...-|....... ...+. .+....+ .|.++ .+.|.|.+++.+++.|+|+
T Consensus 88 ~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~--~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt 165 (206)
T smart00234 88 DNGTVIYHYVSKFVAGPVSPRDFVFVRYWR--ELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVT 165 (206)
T ss_pred CCCCeEEEEEEecccCcCCCCeEEEEEEEE--EcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEE
Confidence 332 222211111 11000011100000 11111 2222222 23333 5688999999988889999
Q ss_pred EEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041 381 YSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 420 (663)
Q Consensus 381 Ytve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr 420 (663)
|..+++|+ |++|.++++.+....+..+++.+++.++..
T Consensus 166 ~~~~~D~~--G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T smart00234 166 WVSHADLK--GWLPHWLVRSLIKSGLAEFAKTWVATLQKH 203 (206)
T ss_pred EEEEEecC--CCccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 99999995 789999999999999999999998887654
No 44
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.92 E-value=2.4e-09 Score=98.29 Aligned_cols=77 Identities=13% Similarity=0.242 Sum_probs=72.6
Q ss_pred EEEEEEccCHHHHHHHhhCchhhhhcccccee------------------------------------------------
Q 006041 97 KAEMLVNADVDSVWNALTDYERLADFVPNLAC------------------------------------------------ 128 (663)
Q Consensus 97 ~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~------------------------------------------------ 128 (663)
+.++.|++|+++||++|+||+++++|+|++.+
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~ 81 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDELEAELTVGFGGIRESFTSRVTLVPPESIEAELVDGPFK 81 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEEEEEEEEeeccccEEEEEEEEecCCCEEEEEecCCChh
Confidence 56899999999999999999999999999988
Q ss_pred -----------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041 129 -----------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 173 (663)
Q Consensus 129 -----------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~ 173 (663)
.+++|+++|++++.|+.++|..++...+++.+..+|.+++++|++
T Consensus 82 ~~~g~w~~~p~~~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 82 HLEGEWRFKPLGENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred hceeEEEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 237899999999999999999999999999999999999999975
No 45
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.81 E-value=1.7e-08 Score=91.21 Aligned_cols=77 Identities=18% Similarity=0.341 Sum_probs=71.8
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------- 128 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------- 128 (663)
.|+.++.|+||++.||++|+||+++++++|.+.+
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 82 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYTWDGAGSVSWTLVE 82 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEEEcCCCcEEEEEec
Confidence 5889999999999999999999999999999886
Q ss_pred ---------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHH
Q 006041 129 ---------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA 171 (663)
Q Consensus 129 ---------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~A 171 (663)
.++||+++|++++.|+.++|..++..+.+..+...+++|++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 83 GEGNRSQEGSYTLTPKGDGTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred ccceeEEEEEEEEEECCCCEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 2368999999999999999999999999999999999999865
No 46
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=98.79 E-value=7e-07 Score=87.23 Aligned_cols=168 Identities=11% Similarity=0.136 Sum_probs=116.8
Q ss_pred cCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee-
Q 006041 237 LNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR- 315 (663)
Q Consensus 237 ~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer- 315 (663)
...+|....+..+. .++.++.+. .+......+++...|++++++++..+-|-.. +|.+.+.++++++.
T Consensus 17 ~~~~W~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~ 85 (206)
T PF01852_consen 17 DEDGWKLYKDKKNG-------DVYYKKVSP--SDSCPIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQI 85 (206)
T ss_dssp TCTTCEEEEEETTT-------CEEEEEEEC--SSSTSCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEE
T ss_pred CCCCCeEeEccCCC-------eEEEEEeCc--cccccceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeec
Confidence 35699999977777 777776442 1112456799999999999977777777666 99999999999987
Q ss_pred cCCEEEEEEE--ecc--ceeEEEEEEEEEEEEeee-CCC--eEEEEEEe---------cCCc--eeEEEEEEEEcCCCeE
Q 006041 316 ENNKVRILQE--GCK--GLLYMVLHARVVMDICEQ-HEQ--EISFEQVE---------GDFD--SFQGKWLFEQLGSHHT 377 (663)
Q Consensus 316 ~gn~vrv~q~--g~~--gll~~~~~~rvVLDV~E~-ppr--rIsfr~Ve---------GdFr--~f~G~WtLeplgdGgT 377 (663)
+++....+.. ... .+...-|.. +..... .+. .+.++.++ |.++ .+.+.|.|++.+++.|
T Consensus 86 ~~~~~i~~~~~~~~~~~p~~~RDfv~---~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~~~~ 162 (206)
T PF01852_consen 86 DEDTDIVYFVMKSPWPGPVSPRDFVF---LRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGDGRT 162 (206)
T ss_dssp ETTEEEEEEEEE-CTTTTSSEEEEEE---EEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETTCEE
T ss_pred CCCCeEEEEEecccCCCCCCCcEEEE---EEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccCCCc
Confidence 4443222221 111 121111111 111111 222 34444443 2233 5679999999999889
Q ss_pred EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhh
Q 006041 378 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKR 420 (663)
Q Consensus 378 rVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr 420 (663)
+|+|..+++|+ |++|.++++.++...+...++.+++++++.
T Consensus 163 ~vt~~~~~D~~--G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 163 RVTYVSQVDPK--GWIPSWLVNMVVKSQPPNFLKNLRKALKKQ 203 (206)
T ss_dssp EEEEEEEEESS--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEECCC--CCChHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999994 789999999999999999999999998874
No 47
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=98.75 E-value=7e-07 Score=84.77 Aligned_cols=112 Identities=17% Similarity=0.423 Sum_probs=81.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCc-c-cccCcCCcEEEEEeecC--CEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041 276 CVVASITVKAPVSEVWNVMTAYET-L-PEIVPNLAISKILSREN--NKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 351 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLTDyEn-y-PeWiP~V~sSrVLer~g--n~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI 351 (663)
.++.++.|+||+++||+++.|+.+ + +.|.|.++++++++.++ +.++.+.-+..+ -...+..+ ++..+...+++
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~~-~~~~~kE~--l~~~D~~~~~~ 78 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPGG-KVKYVKER--IDAVDEENKTY 78 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCCC-cceEEEEE--EEEEcccccEE
Confidence 377899999999999999999994 5 56889999999987642 234443322222 11112333 33334456999
Q ss_pred EEEEEecCC-----ceeEEEEEEEEcCCCeEEEEEEEEEEeccC
Q 006041 352 SFEQVEGDF-----DSFQGKWLFEQLGSHHTLLKYSVESKMQKN 390 (663)
Q Consensus 352 sfr~VeGdF-----r~f~G~WtLeplgdGgTrVtYtve~eP~~g 390 (663)
.|++++|++ +.+.+..+|.+.++++|.++|++.|++..+
T Consensus 79 ~y~vveg~~~~~~~~~y~~t~~v~~~~~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 79 KYTVIEGDVLKDGYKSYKVEIKFVPKGDGGCVVKWTIEYEKKGD 122 (148)
T ss_pred EEEEEecccccCceEEEEEEEEEEECCCCCEEEEEEEEEEECCC
Confidence 999999864 477899999999788999999999998643
No 48
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.74 E-value=2.2e-08 Score=90.50 Aligned_cols=67 Identities=31% Similarity=0.556 Sum_probs=60.8
Q ss_pred EccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------------
Q 006041 102 VNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------------- 128 (663)
Q Consensus 102 i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------------- 128 (663)
|+||++.||++||||++|++|+|.+.+
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 80 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGDGMRARWEVKFGGIKRSWTSRVTEDPPERIRFEQISGPFKSFEGS 80 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECCEEEEEEEECTTTTCEEEEEEEEEECTTTEEEESSETTEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCCeEEEEEEEecCCEEEEEEEEEEEEEeeeeeeeecCCCchhcEEE
Confidence 789999999999999999999999997
Q ss_pred -----cCC-----ceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHH
Q 006041 129 -----RSS-----TTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALA 168 (663)
Q Consensus 129 -----~~~-----gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~ 168 (663)
.++ +|.++|++.++|++++|..++..++++.++.+|++||
T Consensus 81 W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 81 WRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 122 3589999999999999999999999999999999986
No 49
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.71 E-value=2.8e-07 Score=92.95 Aligned_cols=163 Identities=14% Similarity=0.142 Sum_probs=107.1
Q ss_pred cccCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEe
Q 006041 235 SDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILS 314 (663)
Q Consensus 235 ~~~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLe 314 (663)
.+...+|...+..+++ +++..+.+ .+...+.+++++.|+|++++|+++|.|. ++.|.++|.++++++
T Consensus 23 ~~k~k~w~~~~~~~~~-------el~~~k~~----~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe 89 (204)
T cd08908 23 KEKFKGWVSYSTSEQA-------ELSYKKVS----EGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIE 89 (204)
T ss_pred HHHhcCCcccCCCCcE-------EEEEeccC----CCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeE
Confidence 3455688888888888 88888644 2344678999999999999999999888 899999999999998
Q ss_pred ecC-CEEEEEEE--------eccceeEEEEEE-----EEEEEEeeeCCCeEEEEEEecC-CceeEEEEEEEEcCCCeEEE
Q 006041 315 REN-NKVRILQE--------GCKGLLYMVLHA-----RVVMDICEQHEQEISFEQVEGD-FDSFQGKWLFEQLGSHHTLL 379 (663)
Q Consensus 315 r~g-n~vrv~q~--------g~~gll~~~~~~-----rvVLDV~E~pprrIsfr~VeGd-Fr~f~G~WtLeplgdGgTrV 379 (663)
+-+ +.-.+++. .++.++.-.+.. .+++...-..+..+ . +.+- ...+.|.|.|+|.++|+|+|
T Consensus 90 ~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~--P-~~~VR~~~~~~~w~i~P~g~g~t~v 166 (204)
T cd08908 90 ILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRA--P-VAGVRVNVLLSRYLIEPCGSGKSKL 166 (204)
T ss_pred ecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccC--C-cCceEEEEEeeEEEEEECCCCcEEE
Confidence 744 33233332 222221101110 11111110000000 0 0010 12679999999999899999
Q ss_pred EEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041 380 KYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 416 (663)
Q Consensus 380 tYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R 416 (663)
+|..+++|+ |.+|.|++|. +..-+...|..||+-
T Consensus 167 tyi~~~DPg--G~iP~W~~N~-~g~~~~~~~~~~r~s 200 (204)
T cd08908 167 TYMCRIDLR--GHMPEWYTKS-FGHLCAAEVVKIRDS 200 (204)
T ss_pred EEEEEeCCC--CCCcHHHHhh-HHHHHHHHHHHHHhh
Confidence 999999995 7799988664 455566666666653
No 50
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=98.65 E-value=1.9e-07 Score=93.62 Aligned_cols=145 Identities=19% Similarity=0.197 Sum_probs=112.7
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCE-EE-EEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041 274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNK-VR-ILQEGCKGLLYMVLHARVVMDICEQHEQEI 351 (663)
Q Consensus 274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~-vr-v~q~g~~gll~~~~~~rvVLDV~E~pprrI 351 (663)
.+..+....|.++++++|++++|++.|-+|+|+|+.|.|.++.+++ .. -..+|+.++. -.|...++. .++.-+
T Consensus 67 ~k~Y~errligysp~~my~vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l~-E~y~S~Vt~----~~p~l~ 141 (227)
T KOG3177|consen 67 EKAYSERRLIGYSPSEMYSVVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPLD-ERYTSNVTC----VKPHLT 141 (227)
T ss_pred HHHHHHHhhhCCCHHHHHHHHHhHHHhhccccceeccceeecCCCCCceeeEEecCcccc-hhheeeeEE----ecccce
Confidence 3456777789999999999999999999999999999999987432 22 2345777653 456666543 255444
Q ss_pred EEEEEe-cCCceeEEEEEEEEcC--CCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 006041 352 SFEQVE-GDFDSFQGKWLFEQLG--SHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS 425 (663)
Q Consensus 352 sfr~Ve-GdFr~f~G~WtLeplg--dGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~~~ 425 (663)
.-...+ +-|..+...|+|.|-. .+.|.|.|.+.|+.. ..+-..+..-++.+-...++.|+.+||...++--.
T Consensus 142 kt~~~d~rLF~~L~t~Wsf~pg~~~p~tc~ldf~v~FeF~--S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~gp~~ 216 (227)
T KOG3177|consen 142 KTVCADGRLFNHLITIWSFKPGPNIPRTCTLDFSVSFEFK--SLLHSQVATIFFDEVVKQMVNAFEQRARKLYGPES 216 (227)
T ss_pred EEeeccccHHHhhhheeeeccCCCCCCeEEEEEEEEEEeh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 334444 4577999999999876 578999999999974 66777788888888899999999999999987633
No 51
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=98.64 E-value=9.3e-08 Score=87.55 Aligned_cols=78 Identities=22% Similarity=0.360 Sum_probs=67.8
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccc--cee---------------------------------------------
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPN--LAC--------------------------------------------- 128 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~--l~~--------------------------------------------- 128 (663)
++.++.|++|++.||++|+||+++++|+|+ +..
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPTVHVERLELDGGVERLRMWATAFDGSVHTWTSRRVLDPEGRRIVFRQEEPP 80 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCCceEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEEEEcCCCCEEEEEEeeCC
Confidence 467899999999999999999999999995 221
Q ss_pred --------------cC-CceEEEEEEEEecCC--CCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041 129 --------------RS-STTTLSYEVNVIPRL--NFPAIFLERIIRSDLPVNLQALACRAER 173 (663)
Q Consensus 129 --------------~~-~gT~LtY~v~V~P~f--~vP~~lie~~lr~dLp~nL~Ai~~~Ae~ 173 (663)
.+ ++|+++|++++.|+. +++..++..+++++++.+|.+|+++||+
T Consensus 81 ~~~~~~~g~w~~~~~~~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 81 PPVASMSGEWRFEPLGGGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred CChhhheeEEEEEECCCCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 12 679999999999986 4566799999999999999999999984
No 52
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.62 E-value=1.5e-06 Score=83.47 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=88.0
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041 276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 355 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~ 355 (663)
.++.+..|++|+++||+.|+|.|.+..-+|+|++++... +......+---+.+-.++..++.+.....+++.+....
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g---~e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~g 78 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVETNG---DEYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITING 78 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCCcceeeecC---CeEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEEe
Confidence 467889999999999999999999999999999998643 33322222111223345555555443334667877665
Q ss_pred Eec---CCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHH
Q 006041 356 VEG---DFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRD 415 (663)
Q Consensus 356 VeG---dFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~ 415 (663)
..| -|..+.....+.+.+++ |+|.|.++.+.. + +...+..+.++.....++..+-+
T Consensus 79 ~G~~~~g~~~~~~~v~l~~~g~g-t~v~w~~~~~~g--g-~laqlGsr~i~~~~~kli~~~~~ 137 (146)
T COG3427 79 SGGGAAGFADGTVDVQLEPSGEG-TRVNWFADANVG--G-KLAQLGSRLIDSVARKLINRFFD 137 (146)
T ss_pred ecccccceeeeeeEEEEEEcCCC-cEEEEEEEcccc--H-HHHHHhHHHHHHHHHHHHHHHHH
Confidence 431 24466778889998886 999999998862 3 33455555555555444444433
No 53
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.61 E-value=3.7e-06 Score=78.94 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=81.3
Q ss_pred EEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEE-EEeccceeEEEEEEEEEEEEeeeCCCe--EEEEE
Q 006041 279 ASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRIL-QEGCKGLLYMVLHARVVMDICEQHEQE--ISFEQ 355 (663)
Q Consensus 279 asIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~-q~g~~gll~~~~~~rvVLDV~E~pprr--Isfr~ 355 (663)
.++.|++|+++||++|+|++++..-+|+|.+.+.+. +..... ...... +-..|..++.+.-.. ++.. +.+..
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~---~~~~~~~~v~vG~-i~~~~~g~~~~~~~~-~~~~~~~~~~g 75 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG---DEYKGKVKVKVGP-IKGTFDGEVRITEID-PPESYTLEFEG 75 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC---TEEEEEEEEESCC-CEEEEEEEEEEEEEE-TTTEEEEEEEE
T ss_pred CcEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC---cEEEEEEEEEecc-EEEEEEEEEEEEEcC-CCcceEeeeec
Confidence 468899999999999999999999999999999875 333222 223333 234555554433222 3443 55554
Q ss_pred EecCC-ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 356 VEGDF-DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 356 VeGdF-r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
..... ....+.-++...+++.|+|+|+.+++.. +++ ..+.++.+......+++.|-+.+++
T Consensus 76 ~g~~~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~--G~l-a~~g~~~i~~~~~~l~~~f~~~l~~ 137 (140)
T PF06240_consen 76 RGRGGGSSASANITLSLEDDGGTRVTWSADVEVG--GPL-ASLGQRLIESVARRLIEQFFENLER 137 (140)
T ss_dssp EECTCCEEEEEEEEEEECCCTCEEEEEEEEEEEE--CHH-HHC-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccceEEEEEEEEEcCCCCCcEEEEEEEEEEc--cCH-HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 43211 1334444555555555999999999974 433 4455666666666666666555543
No 54
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.59 E-value=1.1e-06 Score=79.29 Aligned_cols=129 Identities=12% Similarity=0.082 Sum_probs=85.1
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 356 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~V 356 (663)
++.++.|+|||++||++++|.++|++|++... ...--..|+...+...+. .. ...... ++++ .++++|.|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~G~~~~~~~~~~-~~--~~~~~~-v~~~--~~~~~l~~~~~ 74 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTT-VESDWKVGSAFEYRRGDD-GT--VDVEGE-VLES--DPPRRLVHTWR 74 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheecccc-cccCCcCCCeEEEEeCCC-cc--cccceE-EEEe--cCCCeEEEEEe
Confidence 56789999999999999999999999998732 111123444443332221 11 111222 1222 47788888866
Q ss_pred ecC------CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 357 EGD------FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 357 eGd------Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
.+. ......+|+|++.++ +|+|+++.+..+. ...+...+.++...+|+.|++++|.
T Consensus 75 ~~~~~~~~~~~~~~v~~~l~~~~~-~t~l~~~~~~~~~------~~~~~~~~~~gw~~~l~~Lk~~~e~ 136 (136)
T cd08893 75 AVWDPEMAAEPPSRVTFEIEPVGD-VVKLTVTHDGFPP------GSPTLEGVSGGWPAILSSLKTLLET 136 (136)
T ss_pred cCCCcccCCCCCEEEEEEEEecCC-cEEEEEEecCCCC------chhHHHhhhcCHHHHHHHHHHHhcC
Confidence 422 125677889999765 6999888765331 2245667788999999999999873
No 55
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.52 E-value=8e-06 Score=82.44 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=111.6
Q ss_pred CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee-cC
Q 006041 239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-EN 317 (663)
Q Consensus 239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer-~g 317 (663)
++|++.++.+++ .||.+-.. +..+ .-.+++.+|++++++||+++.|.+.-.+|.+.|.+.+++++ ++
T Consensus 22 ~gWk~~k~~~~~-------~v~~k~~~---~~~g--kl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~ 89 (204)
T cd08904 22 SGWKVVKTSKKI-------TVSWKPSR---KYHG--NLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDS 89 (204)
T ss_pred cCCeEEecCCce-------EEEEEEcC---CCCc--eEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCC
Confidence 699999999999 99998533 2233 55889999999999999999999999999999999999987 44
Q ss_pred CEEEEEEEecc---ceeE-EEEEEEEEEEEee-eCCCe-E-EEEEEe--------cCCc--eeEEEEEEEEcCCC--eEE
Q 006041 318 NKVRILQEGCK---GLLY-MVLHARVVMDICE-QHEQE-I-SFEQVE--------GDFD--SFQGKWLFEQLGSH--HTL 378 (663)
Q Consensus 318 n~vrv~q~g~~---gll~-~~~~~rvVLDV~E-~pprr-I-sfr~Ve--------GdFr--~f~G~WtLeplgdG--gTr 378 (663)
+....+.+... +++. .-|.. ++... ..+.. | ....++ |.++ ..-+-|.+.|++++ .|.
T Consensus 90 ~T~I~~~~~~~~~~~~vspRDfV~---vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~ 166 (204)
T cd08904 90 DTFICHTITQSFAMGSISPRDFVD---LVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSK 166 (204)
T ss_pred CcEEEEEecccccCCcccCceEEE---EEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceE
Confidence 44444432111 1110 00111 11100 01111 1 112222 3333 22467899998653 799
Q ss_pred EEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041 379 LKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 417 (663)
Q Consensus 379 VtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA 417 (663)
++|-+..+|+ |++|.++++.++...+......|++.+
T Consensus 167 l~~~~~~Dlk--G~lP~~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 167 LVMFVQPELR--GNLSRSVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EEEEEEeCCC--CCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9999999986 889999999999999988888887753
No 56
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.50 E-value=4.2e-07 Score=82.25 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=69.8
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------- 128 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------- 128 (663)
|+.++.|+||++.||++++|++++++++|.+.+
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~~~~~~~~i~~~~~~~~~~~ 81 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKAKGPAGLSVEWDAEITEQVPNERIAWRSVEGADPN 81 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEEecCCCCcEEEEEEEeccCCCCEEEEEECCCCCCc
Confidence 688999999999999999999999999999985
Q ss_pred --------cC-CceEEEEEEEEecCCCCCH----HHHHHHHhhchHHHHHHHHHHHH
Q 006041 129 --------RS-STTTLSYEVNVIPRLNFPA----IFLERIIRSDLPVNLQALACRAE 172 (663)
Q Consensus 129 --------~~-~gT~LtY~v~V~P~f~vP~----~lie~~lr~dLp~nL~Ai~~~Ae 172 (663)
.+ ++|.++|++...|..+++. .+++..+++.+...|+.+++.||
T Consensus 82 ~~~~~f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 82 AGSVRFRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred ceEEEEEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 12 4899999999999988876 46889999999999999999987
No 57
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.50 E-value=1e-06 Score=85.96 Aligned_cols=94 Identities=17% Similarity=0.232 Sum_probs=85.8
Q ss_pred cCCceEEEEEEccCCc-ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------
Q 006041 78 EQRKVHCEVEVVSWRE-RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~-rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------- 128 (663)
+.++|.|-....+.+. ..+.+++.|++++++||+++.|++++.+|.|++..
T Consensus 24 ~~~~v~v~~~~~~~~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rd 103 (195)
T cd08876 24 DKDGIKVYTRDVEGSPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRD 103 (195)
T ss_pred cCCCeEEEEEECCCCCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCce
Confidence 4567888888877665 77999999999999999999999999999999988
Q ss_pred ------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhch
Q 006041 129 ------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDL 160 (663)
Q Consensus 129 ------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dL 160 (663)
.+++|.++|.+++.|+.++|..++..++++.+
T Consensus 104 fv~~~~~~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~~~~~ 183 (195)
T cd08876 104 MVLRSTTEQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFAKDAP 183 (195)
T ss_pred EEEEEEEEEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 23679999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006041 161 PVNLQALACRA 171 (663)
Q Consensus 161 p~nL~Ai~~~A 171 (663)
+..|.+++++|
T Consensus 184 ~~~l~~l~~~~ 194 (195)
T cd08876 184 YNTLENLRKQL 194 (195)
T ss_pred HHHHHHHHHhh
Confidence 99999999998
No 58
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.49 E-value=1.4e-06 Score=82.92 Aligned_cols=129 Identities=14% Similarity=0.088 Sum_probs=88.2
Q ss_pred eEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEee-eCCCeEE
Q 006041 274 HRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQEIS 352 (663)
Q Consensus 274 ~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~pprrIs 352 (663)
++.+..+++|+||+++||++|+|.+++++|++.. ......|+..++...+. +. ..+... +.+ .++++|.
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~---~~~~~~G~~~~~~~~~~-~~--~~~~~~----v~e~~p~~~l~ 79 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPERLARWFAPG---TGDLRVGGRVEFVMDDE-EG--PNATGT----ILACEPPRLLA 79 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC---CCCcccCceEEEEecCC-CC--CccceE----EEEEcCCcEEE
Confidence 5679999999999999999999999999999943 11122344433322221 00 112222 222 3678899
Q ss_pred EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041 353 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 421 (663)
Q Consensus 353 fr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~ 421 (663)
|....++ ......|+|++.+ ++|+|+|..+..+. . -....+..+-...|..|++++|+..
T Consensus 80 ~~~~~~~-~~~~~~~~l~~~~-~gT~v~~~~~~~~~--~-----~~~~~~~~GW~~~L~~Lk~~~e~~~ 139 (157)
T cd08899 80 FTWGEGG-GESEVRFELAPEG-DGTRLTLTHRLLDE--R-----FGAGAVGAGWHLCLDVLEAALEGGP 139 (157)
T ss_pred EEecCCC-CCceEEEEEEEcC-CCEEEEEEEeccCc--h-----hhhhhhcccHHHHHHHHHHHHcCCC
Confidence 8877554 3446788899876 56999999887652 1 2345667788899999999998653
No 59
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.44 E-value=7.2e-07 Score=79.85 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=67.4
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------- 128 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------- 128 (663)
|+.++.|+||++.||++|||+++|+++.|.+..
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p~~~~~~~~~~ 80 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEPGRRVVFRGSS 80 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecCCcEEEEEecC
Confidence 567899999999999999999999999999854
Q ss_pred -------------cCCceEEEEEEEEecCCCCC--HHHHHHHHhhchHHHHHHHHHHHH
Q 006041 129 -------------RSSTTTLSYEVNVIPRLNFP--AIFLERIIRSDLPVNLQALACRAE 172 (663)
Q Consensus 129 -------------~~~gT~LtY~v~V~P~f~vP--~~lie~~lr~dLp~nL~Ai~~~Ae 172 (663)
.+++|+|+|+.++.+++.++ ..++...++..+...|.++++.||
T Consensus 81 ~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e 139 (140)
T cd08865 81 GPFPYEDTYTFEPVGGGTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLE 139 (140)
T ss_pred CCcceEEEEEEEEcCCceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 35789999999999976544 348899999999999999999987
No 60
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.41 E-value=1.1e-06 Score=79.88 Aligned_cols=77 Identities=23% Similarity=0.350 Sum_probs=68.5
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------- 128 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------- 128 (663)
.+++++.|++|+++||++|||++++++++|++..
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKVGPVKGTFKGKVELSDLDPPESYTITGEGK 81 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEEccEEEEEEEEEEEEecCCCcEEEEEEEEc
Confidence 3678999999999999999999999999998876
Q ss_pred ----------------cCCceEEEEEEEEecCCCC---CHHHHHHHHhhchHHHHHHHHHHH
Q 006041 129 ----------------RSSTTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACRA 171 (663)
Q Consensus 129 ----------------~~~gT~LtY~v~V~P~f~v---P~~lie~~lr~dLp~nL~Ai~~~A 171 (663)
.++||+|+|++++.+...+ |..++....++.+...+++|++++
T Consensus 82 ~~~~~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 82 GGAGFVKGTARVTLEPDGGGTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred CCCceEEEEEEEEEEecCCcEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2367999999999977665 888999999999999999999876
No 61
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.38 E-value=1.2e-05 Score=81.42 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=106.0
Q ss_pred ccCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee
Q 006041 236 DLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR 315 (663)
Q Consensus 236 ~~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer 315 (663)
+...+|......++. +++..+.+. +-+.+.+++++.|+++|++|.+.+.+ ..++|-.++.+++++++
T Consensus 24 ~kfk~w~~~~~~~~~-------e~~ykK~~d----~~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ 90 (205)
T cd08909 24 EKFKGWISCSSSDNT-------ELAYKKVGD----GNPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVET 90 (205)
T ss_pred HHhcCCcccCCcCCe-------EEEEecCCC----CCceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEE
Confidence 345688888888888 777775331 23367899999999999999998877 59999999999999987
Q ss_pred cCC-EEEEEEE--------eccceeEEEEEEEEEEEEeeeCCC--eEEEEEEe-------cCCc--eeEEEEEEEEcCCC
Q 006041 316 ENN-KVRILQE--------GCKGLLYMVLHARVVMDICEQHEQ--EISFEQVE-------GDFD--SFQGKWLFEQLGSH 375 (663)
Q Consensus 316 ~gn-~vrv~q~--------g~~gll~~~~~~rvVLDV~E~ppr--rIsfr~Ve-------GdFr--~f~G~WtLeplgdG 375 (663)
-+. .-.++.. .++-++.-.|.. + .+.. .|....++ |.++ ...|.|.++|.++|
T Consensus 91 ld~~tdi~~y~~~~~~P~~~RD~v~~R~w~~----~---~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g 163 (205)
T cd08909 91 LDKQTEVYQYVLNCMAPHPSRDFVVLRSWRT----D---LPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSG 163 (205)
T ss_pred eCCCcEEEEEEeecCCCCCCCEEEEEEEEEE----e---CCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCC
Confidence 433 3233322 122111111110 1 0111 22222222 2233 45789999999988
Q ss_pred eEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041 376 HTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 416 (663)
Q Consensus 376 gTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R 416 (663)
+|+|+|-..++|+ |.+|.|+ ++.+..-+...|..||+-
T Consensus 164 ~trvt~i~~vDpk--G~~P~W~-~n~~g~~~~~~~~~~r~s 201 (205)
T cd08909 164 KSRLTHICRVDLK--GHSPEWY-NKGFGHLCAAEAARIRNS 201 (205)
T ss_pred CEEEEEEEEecCC--CCChHHH-HHhHHHHHHHHHHHHHhh
Confidence 9999999999995 7899977 456677777777777763
No 62
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=98.30 E-value=2.7e-06 Score=76.83 Aligned_cols=78 Identities=23% Similarity=0.433 Sum_probs=67.3
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------- 128 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------- 128 (663)
+++.++.|+||++.||+++||+++++++.|++..
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~ 81 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPPGLVRSTFTVTELRPGHSFTWTGPAPGI 81 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecCCCCceEEEEEEecCCCEEEEEecCCCE
Confidence 5788999999999999999999999999998765
Q ss_pred ----------cC-CceEEEEEEEEecCC-CCCHHHHHHHHhhchHHHHHHHHHHHH
Q 006041 129 ----------RS-STTTLSYEVNVIPRL-NFPAIFLERIIRSDLPVNLQALACRAE 172 (663)
Q Consensus 129 ----------~~-~gT~LtY~v~V~P~f-~vP~~lie~~lr~dLp~nL~Ai~~~Ae 172 (663)
.+ ++|+|+|+.+..+.+ ++...++...++.+++.+|.+|++.+|
T Consensus 82 ~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 137 (138)
T cd08862 82 SAVHRHEFEAKPDGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAE 137 (138)
T ss_pred EEEEEEEEEEcCCCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 23 789999999888653 234568999999999999999999886
No 63
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.30 E-value=3.9e-05 Score=71.20 Aligned_cols=134 Identities=18% Similarity=0.194 Sum_probs=84.5
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 352 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIs 352 (663)
+..+..|+||+++||++++|-+.+.+|++. +..+.+-.+.|+..++...+..+.. +.... .++++ .++++|.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g-~v~e~--~p~~~l~ 77 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMHGPDGTD-YPNRI-VFLEI--EPPERIV 77 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEECCCCCE-ecceE-EEEEE--cCCCEEE
Confidence 567788999999999999999999999852 2223333345555444333322321 21222 22333 4789999
Q ss_pred EEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 353 FEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 353 fr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
|....+. ....-.|+|++.+ ++|+|+++..+... . .-...+...+..+...+|..|++.+++
T Consensus 78 ~t~~~~~-~~~~v~~~~~~~~-~gT~ltl~~~~~~~--~-~~~~~~~~~~~~Gw~~~l~~L~~~l~~ 139 (139)
T cd08894 78 YDHGSGP-PRFRLTVTFEEQG-GKTRLTWRQVFPTA--A-ERCEKIKFGAVEGNEQTLDRLAAYLAR 139 (139)
T ss_pred EEeccCC-CcEEEEEEEEECC-CCEEEEEEEEcCCH--H-HHHHHHHhCHHHHHHHHHHHHHHHHhC
Confidence 9875442 2346788999987 57999998764321 0 001223455677888899999988763
No 64
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=98.29 E-value=3.9e-06 Score=75.31 Aligned_cols=78 Identities=19% Similarity=0.375 Sum_probs=71.0
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------- 128 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------- 128 (663)
+|..++.|++|++.||++|+|+++++++.|.+..
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~~~~~~~~~i~~~~~~~~ 81 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKDGGTVRERLLALDDAERRYSYRIVEGP 81 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCCCCEEEEEehhcCccCCEEEEEecCCC
Confidence 6889999999999999999999999999998555
Q ss_pred ---------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHH
Q 006041 129 ---------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAE 172 (663)
Q Consensus 129 ---------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae 172 (663)
.+++|.++|+....|..++|..++...++..+...|+.|++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 82 LPVKNYVATIRVTPEGDGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred CCcccceEEEEEEECCCCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 12489999999999998899999999999999999999999874
No 65
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.28 E-value=2.2e-05 Score=71.88 Aligned_cols=131 Identities=19% Similarity=0.194 Sum_probs=80.1
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEE
Q 006041 276 CVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQ 355 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~ 355 (663)
.|+.++.|+||+++||++++|.+.|++|++... .......+..-.+...+... ..+... ++++ .++++|.|..
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~~~~~~~~~g~~~~~~~~~---~~~~~~-i~~~--~p~~~l~~~~ 74 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GPFVVGEGATGEITYPGYEH---GVFPVT-VVEV--DPPRRFSFRW 74 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CCcccCCcceeEEecCCCCc---cceEEE-EEEe--CCCcEEEEEe
Confidence 378899999999999999999999999999753 11110111111222222110 111121 1122 4678999886
Q ss_pred EecC---------CceeEEEEEEEEcCCCeEEEEEEEE-EEeccCccch-HH--HHHHHHHhhHHHHHHHHHHHHHh
Q 006041 356 VEGD---------FDSFQGKWLFEQLGSHHTLLKYSVE-SKMQKNSLLS-EA--IMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 356 VeGd---------Fr~f~G~WtLeplgdGgTrVtYtve-~eP~~gg~LP-~~--L~er~vre~L~~~L~ALR~RAEk 419 (663)
..+. -......|+|++.++ +|+|+++.. +.. .+ .. ........+-..+|..|++++|.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gT~vt~~~~~~~~-----~~~~~~~~~~~~~~~gw~~~l~~L~~~le~ 145 (145)
T cd08898 75 HPPAIDPGEDYSAEPSTLVEFTLEPIAG-GTLLTVTESGFDA-----LPAERRAEAYRMNEGGWDEQLENLVAYVEA 145 (145)
T ss_pred cCCCcccccccCCCCceEEEEEEEecCC-cEEEEEEEcCCCC-----CChHHHHHHHHhhhhhHHHHHHHHHHHhcC
Confidence 5332 113467889999875 599999875 221 11 11 12345777888999999998863
No 66
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.24 E-value=2.2e-05 Score=72.41 Aligned_cols=127 Identities=18% Similarity=0.207 Sum_probs=82.7
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCC-----cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNL-----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 351 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V-----~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI 351 (663)
+..++.|+||+++||++++|-+.+.+|+... ..++.--+.|+..++.....++-....+... ++++ .++++|
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~d~~~GG~~~~~~~~~~g~~~~~~~g~-~~ei--~p~~~l 78 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAENDLRVGGKFSYRMEAKDGSMGFDFEGT-YTEV--EPHKLI 78 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeeecCCcCCEEEEEEEcCCCCcccccceE-EEEE--CCCCEE
Confidence 6678999999999999999999999997542 2333333466665544332222111122322 2333 478999
Q ss_pred EEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 352 SFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 352 sfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
.|+...+ ...+|+|++.+ ++|+|+.+. .+ .+.. .......+-..+|..|++.+|+
T Consensus 79 ~~~~~~~----~~v~~~l~~~~-~gT~l~l~~--~~-----~~~~-~~~~~~~GW~~~l~~L~~~le~ 133 (133)
T cd08897 79 EYTMEDG----REVEVEFTEEG-DGTKVVETF--DA-----ENEN-PVEMQRQGWQAILDNFKKYVES 133 (133)
T ss_pred EEEcCCC----CEEEEEEEECC-CCEEEEEEE--CC-----CCCC-cHHHHHHHHHHHHHHHHHHhhC
Confidence 9986432 36789999976 569998863 32 1111 2335667888999999988863
No 67
>PRK10724 hypothetical protein; Provisional
Probab=98.15 E-value=7.1e-06 Score=79.51 Aligned_cols=83 Identities=13% Similarity=0.267 Sum_probs=74.5
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------- 128 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------- 128 (663)
+|+.++.|++|++++|++++||+++.+|+|..+.
T Consensus 16 ~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~~~a~l~v~~~g~~~~f~srv~~~~~~~I~~~~~~Gp 95 (158)
T PRK10724 16 QISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQMTAAVDVSKAGISKTFTTRNQLTSNQSILMQLVDGP 95 (158)
T ss_pred eEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCEEEEEEEEeeCCccEEEEEEEEecCCCEEEEEecCCC
Confidence 6999999999999999999999999999999986
Q ss_pred -------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhccc
Q 006041 129 -------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFGW 177 (663)
Q Consensus 129 -------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~~~~ 177 (663)
.+++|.++|+++++.+-.++..++.....+-...++.|+++||+++++.
T Consensus 96 F~~l~g~W~f~p~~~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg~ 157 (158)
T PRK10724 96 FKKLIGGWKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYSA 157 (158)
T ss_pred hhhccceEEEEECCCCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1257999999999999889888888888887778888999999998764
No 68
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.12 E-value=0.00019 Score=67.20 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=83.3
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcC----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPN----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 352 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIs 352 (663)
+..++.|+||+++||++++|-+.+.+|++. +..+.+--+.|+..++...+.++.. +..... ++++ .++++|.
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~g~~-~~~~g~-v~~i--~p~~~l~ 77 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMRGPDGEE-FPNPGC-FLEV--VPGERLV 77 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEECCCCCE-ecceEE-EEEE--eCCCEEE
Confidence 456788999999999999999999999873 3334544556666555443333321 222222 2333 4789999
Q ss_pred EEEEecC---C-c--eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041 353 FEQVEGD---F-D--SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 353 fr~VeGd---F-r--~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE 418 (663)
|...-.+ . . ....+|+|++.+ ++|+|+.+..... .-.........+..+-...|..|++.++
T Consensus 78 ~t~~~~~~~~~~~~~~~~v~~~~~~~~-~gT~Ltl~~~~~~---~~~~~~~~~~~~~~GW~~~l~~L~~~l~ 145 (146)
T cd08896 78 FTDALTPGWRPAEKPFMTAIITFEDEG-GGTRYTARARHWT---EADRKQHEEMGFHDGWGTAADQLAALAE 145 (146)
T ss_pred EEEeecCCcCCCCCCcEEEEEEEEecC-CcEEEEEEEEeCC---HHHHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 8753211 1 1 145689999976 4699998644321 0011112222346788899999998876
No 69
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.11 E-value=9.8e-06 Score=75.05 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=67.3
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhccccce------e----------------------------------------
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLA------C---------------------------------------- 128 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~------~---------------------------------------- 128 (663)
+|+.++.|++|++.||++++|++++.+|.|... .
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~v~~~~p~~~i~~~ 82 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEMEITESVPNERIEYE 82 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEEEEEecCCCcEEEEE
Confidence 588999999999999999999999999998321 0
Q ss_pred -------------------cCCceEEEEEEEEecCCCCC----HHHHHHHHhhchHHHHHHHHHHHHH
Q 006041 129 -------------------RSSTTTLSYEVNVIPRLNFP----AIFLERIIRSDLPVNLQALACRAER 173 (663)
Q Consensus 129 -------------------~~~gT~LtY~v~V~P~f~vP----~~lie~~lr~dLp~nL~Ai~~~Ae~ 173 (663)
.++||.|+|+++..+.+..+ ..++...+++++...|.++++.+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 83 LRFIKPFEATNDVEFTLEPVGGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred EEecCCccccceEEEEEEEcCCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 24779999999999887655 3477999999999999999999884
No 70
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.11 E-value=6.5e-05 Score=69.72 Aligned_cols=130 Identities=17% Similarity=0.214 Sum_probs=83.5
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 356 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~V 356 (663)
++.++.|+||+++||+.++|-+.+.+|.+.-...++ +.|+..+.......+. ... .++++ .++++|.|...
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~~--~~Gg~~~~~~~~~~~~----~~g-~~~~~--~p~~~l~~~w~ 72 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGRL--EEGKTVTWDWEMYGAS----VPV-NVLEI--EPNKRIVIEWG 72 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCccc--cCCCEEEEEEEccCCc----eEE-EEEEE--cCCCEEEEEec
Confidence 678999999999999999999999998665333332 3455444433322221 112 22233 47899998865
Q ss_pred ecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHH-HHHHHhhHHHHHHHHHHHHHh
Q 006041 357 EGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIM-EEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 357 eGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~-er~vre~L~~~L~ALR~RAEk 419 (663)
.+. ....-.|+|++.++++|+|++....-+. .-+..+. ......+...+|..|+..+|.
T Consensus 73 ~~~-~~s~v~~~l~~~~~ggT~ltl~~~~~~~---~~~~~~~~~~~~~~GW~~~L~~L~~~le~ 132 (136)
T cd08901 73 DPG-EPTTVEWTFEELDDGRTFVTITESGFPG---TDDEGLKQALGSTEGWTLVLAGLKAYLEH 132 (136)
T ss_pred CCC-CCEEEEEEEEECCCCcEEEEEEECCCCC---CcHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 432 1346789999987568999998653221 1221221 122457888999999999886
No 71
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.05 E-value=9.5e-06 Score=75.81 Aligned_cols=77 Identities=21% Similarity=0.273 Sum_probs=65.3
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------- 128 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------- 128 (663)
|..++.|++|++.||+.|+|+++|+..+|++..
T Consensus 1 ~~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 80 (146)
T cd07823 1 LENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDEYKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEATGK 80 (146)
T ss_pred CCceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCeEEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEEEe
Confidence 456899999999999999999999999998876
Q ss_pred ------------------cCCceEEEEEEEEecCCCCCHHH---HHHHHhhchHHHHHHHHHHHH
Q 006041 129 ------------------RSSTTTLSYEVNVIPRLNFPAIF---LERIIRSDLPVNLQALACRAE 172 (663)
Q Consensus 129 ------------------~~~gT~LtY~v~V~P~f~vP~~l---ie~~lr~dLp~nL~Ai~~~Ae 172 (663)
.+++|+|+|++++.....++.+. +....++-+..-++.|++++|
T Consensus 81 ~~~~~g~~~~~~~~~l~~~~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 81 DARGQGTAEATVTLRLSPAGGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred cCCCcceEEEEEEEEEEecCCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 14679999999998888777664 788888888888888888876
No 72
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.05 E-value=0.00018 Score=72.81 Aligned_cols=162 Identities=13% Similarity=0.194 Sum_probs=106.3
Q ss_pred CCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEee-cC
Q 006041 239 SKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSR-EN 317 (663)
Q Consensus 239 ~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer-~g 317 (663)
+.|++.+...|. .|+.+..- |.+|.. .+.+.+|+..+++||+.|.+.....+|.+++++++|+++ +.
T Consensus 23 ~~Wkl~k~~~~~-------~v~~k~~~---ef~gkl--~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~ 90 (202)
T cd08902 23 EEWRVAKKSKDV-------TVWRKPSE---EFGGYL--YKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEE 90 (202)
T ss_pred cCcEEEEeCCCE-------EEEEecCC---cCCCce--EEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcC
Confidence 399999999988 88888422 233333 556666789999999999999999999999999999987 33
Q ss_pred CEEEE-EEEecc--ceeE-EEEEEEEEEEEee-eCCCeEEEE-EEe------cCCcee--EEEEEEEEcCCC--eEEEEE
Q 006041 318 NKVRI-LQEGCK--GLLY-MVLHARVVMDICE-QHEQEISFE-QVE------GDFDSF--QGKWLFEQLGSH--HTLLKY 381 (663)
Q Consensus 318 n~vrv-~q~g~~--gll~-~~~~~rvVLDV~E-~pprrIsfr-~Ve------GdFr~f--~G~WtLeplgdG--gTrVtY 381 (663)
+.... +.+.-. +++. .-|.. +.... ..+..+.-- .++ |.++++ =+-|.+.|++++ .|.+++
T Consensus 91 dt~I~~yvt~~~~~~iISpRDFVd---v~~~~~~~d~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~ 167 (202)
T cd08902 91 NCCVMRYTTAGQLLNIISPREFVD---FSYTTQYEDGLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTG 167 (202)
T ss_pred CcEEEEEEcccCCcCccCccceEE---EEEEEEeCCCeEEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEE
Confidence 44332 332111 1110 00111 01111 111111110 011 223322 357899998765 566777
Q ss_pred EEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHH
Q 006041 382 SVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYV 417 (663)
Q Consensus 382 tve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RA 417 (663)
-+.++++ |++|..+++.++-+.+......||+++
T Consensus 168 ~lq~DLk--G~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 168 YIQTDLR--GMLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEEecCC--CCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 7778885 789999999999999999999999875
No 73
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=98.04 E-value=2.3e-05 Score=74.63 Aligned_cols=79 Identities=13% Similarity=0.247 Sum_probs=70.9
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------- 128 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------- 128 (663)
+..-+|.|++|++.||++++|.+++.+|+|..+.
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~~r~~i~~~~~g~~~~w~s~~~~~~~~~~i~~~~~ 81 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVRFRLTMHPDANGTVWSWVSERTLDPVNRTVRARRV 81 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEEEEEEEEeccCCEEEEEEEEEEecCCCcEEEEEEe
Confidence 3567899999999999999999999999999988
Q ss_pred ----------------cCCceEEEEEEEEecC--CCCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041 129 ----------------RSSTTTLSYEVNVIPR--LNFPAIFLERIIRSDLPVNLQALACRAER 173 (663)
Q Consensus 129 ----------------~~~gT~LtY~v~V~P~--f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~ 173 (663)
.++||+++|..+.... .+++..++.+.+++.++.+|.+||++||+
T Consensus 82 ~~~p~~~m~~~W~f~~~~~gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 82 ETGPFAYMNIRWEYTEVPEGTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred cCCCcceeeeeEEEEECCCCEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 2467999999988854 47778899999999999999999999997
No 74
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=98.02 E-value=4.5e-05 Score=68.53 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=67.4
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------- 128 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------- 128 (663)
+|+.++.|+||++.||++|+|++++.++.|.+..
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~ 82 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVRVAGRGTVREEITEYDPEPRRITWRFVPSGF 82 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEEECSCSEEEEEEEEEETTTTEEEEEEESSSS
T ss_pred EEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEEeccccceeEEEEEecCCCcEEEEEEEecce
Confidence 5789999999999999999999999999999887
Q ss_pred -----------cCCceEEEEEEEEecC--CCCCHHHHHHHHhhchHHHHHHHHHHHH
Q 006041 129 -----------RSSTTTLSYEVNVIPR--LNFPAIFLERIIRSDLPVNLQALACRAE 172 (663)
Q Consensus 129 -----------~~~gT~LtY~v~V~P~--f~vP~~lie~~lr~dLp~nL~Ai~~~Ae 172 (663)
.++||+++|++++.|. -+++..++...++..+...|+.|++.+|
T Consensus 83 ~~~~~~~~~~~~~~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 83 TNGTGRWRFEPVGDGTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp CEEEEEEEEEEETTTEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEEEcCCCEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 2467999999999972 3444567899999999999999999987
No 75
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.00 E-value=0.00037 Score=65.26 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=81.8
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCc-EE---EEEeecCCEEEEEEEecc-------ceeEEEEEEEEEEEEee
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLA-IS---KILSRENNKVRILQEGCK-------GLLYMVLHARVVMDICE 345 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~-sS---rVLer~gn~vrv~q~g~~-------gll~~~~~~rvVLDV~E 345 (663)
++.+..|+||++.||++++|.+.+.+|++.-. .+ ..-.+.|+...+...... +.. ..+.. .++++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~-~~~~g-~v~~v-- 77 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNT-DVFGG-RFLEL-- 77 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcE-eeeEE-EEEEE--
Confidence 56678899999999999999999999997432 22 222234554444333211 111 11122 12232
Q ss_pred eCCCeEEEEEEe--cCCc-eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041 346 QHEQEISFEQVE--GDFD-SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 346 ~pprrIsfr~Ve--GdFr-~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE 418 (663)
.++++|.|...- +... ...-.|+|++.+ ++|+|+++...-+ ..........+-..+|..|++.+|
T Consensus 78 ~p~~~i~~~~~~~~~~~~~~~~v~~~~~~~~-~~T~lt~~~~~~~-------~~~~~~~~~~GW~~~l~~L~~~le 145 (146)
T cd08895 78 VPNERIVYTDVFDDPSLSGEMTMTWTLSPVS-GGTDVTIVQSGIP-------DGIPPEDCELGWQESLANLAALVE 145 (146)
T ss_pred cCCCEEEEEEEecCCCCCceEEEEEEEEecC-CCEEEEEEEeCCC-------chhhhhHHHHHHHHHHHHHHHHhc
Confidence 477899987542 2222 346788999986 5699998876322 223345777788889999998876
No 76
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.99 E-value=1.6e-05 Score=74.32 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=63.3
Q ss_pred EEEEEEccCHHHHHHHhhCchhhhhcccccee------------------------------------------------
Q 006041 97 KAEMLVNADVDSVWNALTDYERLADFVPNLAC------------------------------------------------ 128 (663)
Q Consensus 97 ~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~------------------------------------------------ 128 (663)
.-+..|++|++.||+++||++++++++|++.+
T Consensus 4 ~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~ 83 (146)
T cd07824 4 HTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEPLSLLEVRAS 83 (146)
T ss_pred eEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecCCcEEEEEEE
Confidence 34678999999999999999999999997654
Q ss_pred -------------cCCceEEEEEEEEecCC-------CCCHHHHHHHHhhchHHHHHHHHHH
Q 006041 129 -------------RSSTTTLSYEVNVIPRL-------NFPAIFLERIIRSDLPVNLQALACR 170 (663)
Q Consensus 129 -------------~~~gT~LtY~v~V~P~f-------~vP~~lie~~lr~dLp~nL~Ai~~~ 170 (663)
.++||.|+|+.++.++- .+...++....++-++..+++|+++
T Consensus 84 g~~~~~~~~~~~~~~~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 84 GDLEGVGRWTLAPDGSGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EeeeEEEEEEEEEcCCCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 24789999999999854 5666699999999999999999875
No 77
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.98 E-value=0.00031 Score=62.61 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=77.4
Q ss_pred cCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEEecC---C
Q 006041 284 KAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGD---F 360 (663)
Q Consensus 284 ~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~VeGd---F 360 (663)
+||+++||++++|.+.+.+|.+ +.....--+.|+..++ .. .++-. +.+... ++++ .++++|.|....++ .
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W~~-~~~~~~~~~~Gg~~~~-~~-~~g~~-~~~~~~-v~~~--~p~~~i~~~~~~~~~~~~ 73 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQWFT-TSEAEMDFRPGGSFRF-MD-PDGGE-FGFDGT-VLEV--EPPERIVFTWRMPDDPDG 73 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHHSE-EEEEEEECSTTEEEEE-EE-TTSEE-EEEEEE-EEEE--ETTTEEEEEEEEETSSSC
T ss_pred CcCHHHHHHHHCCHhHHhhccC-CCcceeeeecCCEEEE-Ee-cCCCC-ceeeEE-EEEE--eCCEEEEEEEEccCCCCC
Confidence 5999999999999999999911 1222333345555444 22 33321 223333 2233 47899999865433 3
Q ss_pred ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041 361 DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 361 r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE 418 (663)
......|+|++ .+++|+|++....-+ . .......+..+...+|..|++.+|
T Consensus 74 ~~~~v~~~~~~-~~~~T~l~~~~~~~~-----~-~~~~~~~~~~gw~~~l~~L~~~lE 124 (124)
T PF08327_consen 74 PESRVTFEFEE-EGGGTRLTLTHSGFP-----D-DDEEEEGMEQGWEQMLDRLKAYLE 124 (124)
T ss_dssp EEEEEEEEEEE-ETTEEEEEEEEEEEH-----S-HHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEEE-cCCcEEEEEEEEcCC-----c-cHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36688889999 556899999885432 1 222222288899999999999876
No 78
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.90 E-value=0.00072 Score=62.97 Aligned_cols=133 Identities=13% Similarity=0.053 Sum_probs=81.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcC-----CcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPN-----LAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEI 351 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~-----V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrI 351 (663)
+.-+..++||+++||++++|-+.+.+|+.. +..+++--+.|+..+.......+.. +.... .++++ .++++|
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~~~g~~-~~~~g-~~~~~--~p~~~l 77 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFRVGGREVSRGGPKGGPE-ITVEA-RYHDI--VPDERI 77 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecCCCCEEEEEEECCCCCE-EeeeE-EEEEe--cCCceE
Confidence 345677999999999999999999999964 2334444445665554443323322 12222 22333 478899
Q ss_pred EEEEEe--cCC--ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 352 SFEQVE--GDF--DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 352 sfr~Ve--GdF--r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
.|.... ++- ....-+++|++.+ ++|+|++....-.. +. .. .......+-..+|..|++++++
T Consensus 78 ~~t~~~~~~~~~~~~s~v~~~l~~~~-~gT~l~~~~~~~~~-~~--~~--~~~~~~~GW~~~l~~L~~~l~~ 143 (143)
T cd08900 78 VYTYTMHIGGTLLSASLATVEFAPEG-GGTRLTLTEQGAFL-DG--DD--DPAGREQGTAALLDNLAAELER 143 (143)
T ss_pred EEEEeeccCCccccceEEEEEEEECC-CCEEEEEEEEEecc-cc--cc--hhhhHHHHHHHHHHHHHHHHhC
Confidence 877532 111 1345678999886 46999998664211 01 11 1234567778888888888763
No 79
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.89 E-value=0.00047 Score=64.77 Aligned_cols=134 Identities=19% Similarity=0.132 Sum_probs=82.4
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCC--------cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCC
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNL--------AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHE 348 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V--------~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pp 348 (663)
|+.+++|+||+++||++++| .+.+|++.- ..+.+--+.|+.... ...++.. . ... .++++ .++
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~--~~~~g~~-~-~~g-~v~~v--~p~ 72 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE--IGEDGTE-C-EWG-TVLAW--EPP 72 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE--ecCCCcE-e-ceE-EEEEE--cCC
Confidence 67899999999999999999 588887532 333444455554332 2222322 1 122 23333 478
Q ss_pred CeEEEEEEe-cCCc-----eeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 349 QEISFEQVE-GDFD-----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 349 rrIsfr~Ve-GdFr-----~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
++|.|.-.. ..+. ...-+|+|++.++++|+|++....-...+.-.........+..+-..+|..|++.+|+
T Consensus 73 ~~l~~tw~~~~~~~~~~~~~t~vt~~l~~~~~~gT~ltl~~~~~~~~~~~~~~~~~~~~~~~GW~~~L~~L~~~l~~ 149 (149)
T cd08891 73 SRLVFTWQINADWRPDPDKASEVEVRFEAVGAEGTRVELEHRGFERHGDGWEAAAMRMGYDGGWPLLLERYAAAAEK 149 (149)
T ss_pred CEEEEEeccCCCcCcCCCCceEEEEEEEECCCCCeEEEEEEecccccCcchhhHHHHhcccCcHHHHHHHHHHHhcC
Confidence 899887552 1111 3467899999873579999876643210000012334455677888999999998874
No 80
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.88 E-value=0.0011 Score=62.12 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=84.6
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 352 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V----~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIs 352 (663)
++.+..++||+++||+.+||-+.+.+|+..- ..+++--+.|+..++...+.++-. +..... ++++ .++++|.
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~~~g~~-~~~~g~-~~ei--~p~~~l~ 77 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRAPDGEE-MGFHGV-YHEV--TPPERIV 77 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEECCCCCE-ecceEE-EEEE--cCCCEEE
Confidence 4567889999999999999999999999753 233444455666554433222211 112222 2232 4778998
Q ss_pred EEEEecC--CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041 353 FEQVEGD--FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 353 fr~VeGd--Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE 418 (663)
|...-.. -....-+|+|++.+ ++|+|+.+..+.. .-.-...+...+..+-..+|..|...++
T Consensus 78 ~t~~~~~~~~~~s~v~~~l~~~~-~gT~l~l~~~~~~---~~~~~~~~~~~~~~Gw~~~l~~L~~~l~ 141 (142)
T cd07826 78 QTEEFEGLPDGVALETVTFTELG-GRTRLTATSRYPS---KEARDGVLASGMEEGMEESYDRLDELLA 141 (142)
T ss_pred EEeEecCCCCCceEEEEEEEECC-CCEEEEEEEEeCC---HHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8754322 22456788999986 5799998755421 0011124555677888889998888764
No 81
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.87 E-value=7.4e-05 Score=64.51 Aligned_cols=75 Identities=28% Similarity=0.486 Sum_probs=62.5
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------- 128 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------- 128 (663)
+..++.|++|++.||++|+|++++++++|.+..
T Consensus 1 ~~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 80 (141)
T cd07812 1 VEASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGGVGARFVGGRKGGRRLTLTSEVTEVDPPRPGRFRVTGG 80 (141)
T ss_pred CcEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCccceeEEEEEecCCccccceEEEEEecCCCceEEEEecC
Confidence 357899999999999999999999999999886
Q ss_pred --------------cCC-ceEEEEEEEEecCCCC---CHHHHHHHHhhchHHHHHHHHHH
Q 006041 129 --------------RSS-TTTLSYEVNVIPRLNF---PAIFLERIIRSDLPVNLQALACR 170 (663)
Q Consensus 129 --------------~~~-gT~LtY~v~V~P~f~v---P~~lie~~lr~dLp~nL~Ai~~~ 170 (663)
.++ +|.++|++.+.+..++ +..++...++..+...+.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 81 GGGVDGTGEWRLEPEGDGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred CCCcceeEEEEEEECCCCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 124 8999999999999887 56677777777777777776653
No 82
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=97.84 E-value=0.001 Score=64.14 Aligned_cols=135 Identities=16% Similarity=0.325 Sum_probs=89.6
Q ss_pred EEEEEEEEcCCHHHHHHHHh-ccCcccccCcCC-cEEEEEeecCC---EEEEEEEeccceeEEEEEEEEEEEEeeeCCCe
Q 006041 276 CVVASITVKAPVSEVWNVMT-AYETLPEIVPNL-AISKILSRENN---KVRILQEGCKGLLYMVLHARVVMDICEQHEQE 350 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLT-DyEnyPeWiP~V-~sSrVLer~gn---~vrv~q~g~~gll~~~~~~rvVLDV~E~pprr 350 (663)
.+..++.+++|++.+|+++. .-..+|.-+|++ +++++++.+++ .++.+.-+..+- ..+ .+-.++..+...+.
T Consensus 5 ~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~--~~~-~Kekve~~D~~~~~ 81 (151)
T PF00407_consen 5 KLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGP--FKY-VKEKVEAIDEENKT 81 (151)
T ss_dssp EEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSS--EEE-EEEEEEEEETTTTE
T ss_pred EEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCC--cce-eEEEEEeecCCCcE
Confidence 57889999999999999999 555678888886 55688887543 454443333332 111 12234555556699
Q ss_pred EEEEEEecCCc----eeEEEEEEEEcCCCeEEEEEEEEEEeccCcc-chHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041 351 ISFEQVEGDFD----SFQGKWLFEQLGSHHTLLKYSVESKMQKNSL-LSEAIMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 351 Isfr~VeGdFr----~f~G~WtLeplgdGgTrVtYtve~eP~~gg~-LP~~L~er~vre~L~~~L~ALR~RAE 418 (663)
+.|..++|++- .|...-.+.|.++|+|.+++++++++..+.. .|.-.+.. +..+++++.+++-
T Consensus 82 ~~y~viEGd~l~~~~~~~~~~~~~~~~~g~~v~k~t~~Ye~~~~~~~~p~~~~~~-----~~~~~K~ieayLl 149 (151)
T PF00407_consen 82 ITYTVIEGDVLGDYKSFKSTIQKIPKGDGGCVVKWTIEYEKKGEDVPPPEKYLDF-----AVGMFKAIEAYLL 149 (151)
T ss_dssp EEEEEEEETTGTTTEEEEEEEEEEEETTSCEEEEEEEEEEESSTSCHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred EEEEEEeccccccEEEEEEEEEecCCCCCceEEEEEEEEEecCCCCCCcHHHHHH-----HHHHHHHHHHHHh
Confidence 99999999853 6666666667788889999999999864332 34333332 5566666666543
No 83
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=97.52 E-value=0.00029 Score=63.58 Aligned_cols=77 Identities=25% Similarity=0.204 Sum_probs=61.0
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccc--cee---------------------------------------------
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPN--LAC--------------------------------------------- 128 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~--l~~--------------------------------------------- 128 (663)
|..++.|+||++.||++|+|+++++++.|+ ..+
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~Gg~~~~~~~~~~g~~~~~~~~i~~~~~~~~i~~~~~~~~~ 81 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVGGRWFFFMTGPDGEEGWVSGEVLEVEPPRRLVFTWAFSDE 81 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCCceEEEEEECCCCCEEeccEEEEEEcCCCeEEEEecccCC
Confidence 678899999999999999999999999995 222
Q ss_pred --------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041 129 --------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 173 (663)
Q Consensus 129 --------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~ 173 (663)
.+++|+|+|+.+..+.. .|.......+++..+..|..|++.||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~T~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 82 TPGPETTVTVTLEETGGGTRLTLTHSGFPEE-DAEQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred CCCCceEEEEEEEECCCCEEEEEEEEccChH-hHHHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 23668888888777763 224467777888889999999988873
No 84
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.48 E-value=0.00037 Score=62.56 Aligned_cols=77 Identities=25% Similarity=0.334 Sum_probs=62.2
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------------------------
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------------------------- 128 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------------------------- 128 (663)
|+.++.|++|++.||+.|+|.+++.++.|.+..
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~~~~ 81 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARLRFVVKLPGGPPRSFKPRVTEVEPPRRLAWRGGLPF 81 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEEEEEEeCCCCCcEEEEEEEEEEcCCCEeEEEecCCC
Confidence 678999999999999999999999999987653
Q ss_pred --------------c-CCceEEEEEEEEecC-CCCCHHHHHHHHhhchHHHHHHHHHHHH
Q 006041 129 --------------R-SSTTTLSYEVNVIPR-LNFPAIFLERIIRSDLPVNLQALACRAE 172 (663)
Q Consensus 129 --------------~-~~gT~LtY~v~V~P~-f~vP~~lie~~lr~dLp~nL~Ai~~~Ae 172 (663)
. +++|+++++....+. .++...++...+++++...|.+|++.||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 82 PGLLDGEHSFELEPLGDGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred CcEeeEEEEEEEEEcCCCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 2 467888887655432 1233457999999999999999999886
No 85
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.47 E-value=0.00092 Score=67.56 Aligned_cols=95 Identities=9% Similarity=0.136 Sum_probs=84.0
Q ss_pred CCceEEEEEEccCCcceEEEEEEEccCHHHHH-HHhhCchhhhhcccccee-----------------------------
Q 006041 79 QRKVHCEVEVVSWRERRIKAEMLVNADVDSVW-NALTDYERLADFVPNLAC----------------------------- 128 (663)
Q Consensus 79 ~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW-~vLTDYe~la~fiP~l~~----------------------------- 128 (663)
.++|.|-....+....-..+++.|++|++.++ .+|.|.++..+..+++.+
T Consensus 34 ~~gi~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~R 113 (209)
T cd08906 34 DNGDTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPR 113 (209)
T ss_pred CCCCEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCC
Confidence 46788888778765577899999999999998 689999999999988887
Q ss_pred --------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhh
Q 006041 129 --------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRS 158 (663)
Q Consensus 129 --------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~ 158 (663)
.+++|.++|.+.+.|+.++|..++.+.+.+
T Consensus 114 DfV~~r~~~~~~~~~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP~~lvN~~~~~ 193 (209)
T cd08906 114 DFVNVRRIERRRDRYVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRLPRYLIHQSLAA 193 (209)
T ss_pred ceEEEEEEEecCCcEEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 135799999999999999999999999999
Q ss_pred chHHHHHHHHHHHHH
Q 006041 159 DLPVNLQALACRAER 173 (663)
Q Consensus 159 dLp~nL~Ai~~~Ae~ 173 (663)
-.-..|.+||++++.
T Consensus 194 ~~~~~~~~LR~~~~~ 208 (209)
T cd08906 194 TMFEFASHLRQRIRD 208 (209)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999863
No 86
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.35 E-value=0.0053 Score=62.44 Aligned_cols=164 Identities=16% Similarity=0.147 Sum_probs=105.2
Q ss_pred CcccCCCceeecccccCCCCcccceEEEEeeccccccCCeeEEEEEEEEEcCCHH-HHHHHHhccCcccccCcCCcEEEE
Q 006041 234 SSDLNSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHRCVVASITVKAPVS-EVWNVMTAYETLPEIVPNLAISKI 312 (663)
Q Consensus 234 ~~~~~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r~VrasIvI~APpe-qVWaVLTDyEnyPeWiP~V~sSrV 312 (663)
+.+...+|....+.+++ +|+.+... .+-..+..++++.|+++|. .++++|.| -..|=+++.++++
T Consensus 22 ~~ek~kgW~~~~~~~~v-------ev~~kk~~----d~~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~ 87 (205)
T cd08907 22 ASERFKGWHSAPGPDNT-------ELACKKVG----DGHPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQV 87 (205)
T ss_pred hhhccCCceeecCCCCc-------EEEEEeCC----CCCceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhh
Confidence 45667899999999999 99999633 2344678999999986655 55788888 5569999999988
Q ss_pred Eee--cCCEEEEEEEeccceeEEEEEEEEEEEEee-eCCC---eEEEEEEe-------cCCc--eeEEEEEEEEcCCCeE
Q 006041 313 LSR--ENNKVRILQEGCKGLLYMVLHARVVMDICE-QHEQ---EISFEQVE-------GDFD--SFQGKWLFEQLGSHHT 377 (663)
Q Consensus 313 Ler--~gn~vrv~q~g~~gll~~~~~~rvVLDV~E-~ppr---rIsfr~Ve-------GdFr--~f~G~WtLeplgdGgT 377 (663)
+++ .++.+..|.... +..+.-+.-++++--. ..++ -|.=..++ |.++ .+.-.+-++|.+.|+|
T Consensus 88 Ie~Ld~n~dI~yY~~~~--~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s 165 (205)
T cd08907 88 IEALENNTEVYHYVTDS--MAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRS 165 (205)
T ss_pred heeecCCCEEEEEEecC--CCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCe
Confidence 876 233443343211 1000001111111100 0010 01001111 1122 3344456899988899
Q ss_pred EEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041 378 LLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 416 (663)
Q Consensus 378 rVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R 416 (663)
+|+|-..++|+ |.+|.|. ++....-+...|..||+-
T Consensus 166 ~ltyi~rvD~r--G~~P~Wy-nk~~g~~~a~~l~~ir~s 201 (205)
T cd08907 166 RLTHICRADLR--GRSPDWY-NKVFGHLCAMEVARIRDS 201 (205)
T ss_pred EEEEEEEeCCC--CCCcHHH-HHhHHHHHHHHHHHHHhh
Confidence 99999999996 7899998 999999999999988864
No 87
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0079 Score=57.51 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=81.2
Q ss_pred eeEEEEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEE
Q 006041 273 VHRCVVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEIS 352 (663)
Q Consensus 273 ~~r~VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIs 352 (663)
.+..++.+.+|+||++.||+.+||-+.+++|+. -.-++.--+.++..++...+..+-. +.+... ++++ .++++|.
T Consensus 6 ~~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~~~~~~~~~~g~~-~~~~~~-~~~v--~p~~rIv 80 (149)
T COG3832 6 EDRTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGGERVRFRGPDGPV-HSFEGE-YLEV--VPPERIV 80 (149)
T ss_pred CCceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCceEEeeecCCCCe-eecceE-EEEE--cCCcEEE
Confidence 366799999999999999999999999999998 2212222233343333333333311 223333 3344 4788887
Q ss_pred EEEEecC----CceeEEEEEEEEcCCC-eEEEEEEEEEEeccCccchHHHH--HHHHHhhHHHHHHHHHHHHH
Q 006041 353 FEQVEGD----FDSFQGKWLFEQLGSH-HTLLKYSVESKMQKNSLLSEAIM--EEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 353 fr~VeGd----Fr~f~G~WtLeplgdG-gTrVtYtve~eP~~gg~LP~~L~--er~vre~L~~~L~ALR~RAE 418 (663)
|.-.... +..-..+|+|.+..+| +|++...... ..+++.-. ...+..+...++..|++.++
T Consensus 81 ~tw~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Gw~~~~~~l~~~l~ 148 (149)
T COG3832 81 FTWDFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSGG-----GFLEDEDQKLGMGMEEGWGQLLDNLKALLE 148 (149)
T ss_pred EEeccCCCCCcccCceEEEEEEEecCCCcEEEEEEeec-----cccchhHHHhCcchhhhHHHHHHHHHHhhc
Confidence 7754422 2245788889886555 3443333322 12333322 22347788888888888765
No 88
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=97.25 E-value=0.0026 Score=64.10 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=81.8
Q ss_pred CCceEEEEEEccCCcceEEEEEEEccCHHHHH-HHhhCchhhhhcccccee-----------------------------
Q 006041 79 QRKVHCEVEVVSWRERRIKAEMLVNADVDSVW-NALTDYERLADFVPNLAC----------------------------- 128 (663)
Q Consensus 79 ~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW-~vLTDYe~la~fiP~l~~----------------------------- 128 (663)
.+++.|-....+....-.+++..|++|+++|+ .++.|+++..+..+++.+
T Consensus 34 ~~gi~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~R 113 (209)
T cd08905 34 ENGDKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPR 113 (209)
T ss_pred CCCCEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCcc
Confidence 45666666777654477899999999999999 777899999999999877
Q ss_pred -----------------------------------------------c---CCceEEEEEEEEecCCCCCHHHHHHHHhh
Q 006041 129 -----------------------------------------------R---SSTTTLSYEVNVIPRLNFPAIFLERIIRS 158 (663)
Q Consensus 129 -----------------------------------------------~---~~gT~LtY~v~V~P~f~vP~~lie~~lr~ 158 (663)
. ++.|.++|.+.+.|+.++|..|+.+.+.+
T Consensus 114 D~V~~~~~~~~~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~~lvN~~~~~ 193 (209)
T cd08905 114 DFVSVRCAKRRGSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPKSIINQVLSQ 193 (209)
T ss_pred ceEEEEEEEEcCCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCCCHHHHHHHhHH
Confidence 1 26799999999999999999999999999
Q ss_pred chHHHHHHHHHHHH
Q 006041 159 DLPVNLQALACRAE 172 (663)
Q Consensus 159 dLp~nL~Ai~~~Ae 172 (663)
-.-..|.+||+.++
T Consensus 194 ~~~~~~~~Lr~~~~ 207 (209)
T cd08905 194 TQVDFANHLRQRMA 207 (209)
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999999886
No 89
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=97.21 E-value=0.00097 Score=62.71 Aligned_cols=31 Identities=32% Similarity=0.528 Sum_probs=27.7
Q ss_pred EEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041 98 AEMLVNADVDSVWNALTDYERLADFVPNLAC 128 (663)
Q Consensus 98 a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~ 128 (663)
+++.|++|++.||+.|+|+++|+.-||++.+
T Consensus 1 Gs~~v~a~~~~vw~~l~D~~~l~~ciPG~~~ 31 (140)
T PF06240_consen 1 GSFEVPAPPEKVWAFLSDPENLARCIPGVES 31 (140)
T ss_dssp EEEEECS-HHHHHHHHT-HHHHHHHSTTEEE
T ss_pred CcEEecCCHHHHHHHhcCHHHHHhhCCCcEE
Confidence 5789999999999999999999999999998
No 90
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=97.19 E-value=0.00086 Score=64.81 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=32.4
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC 128 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~ 128 (663)
+++++++|++|+++||+-|+|-|++++-||++.+
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs 35 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQS 35 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCCcce
Confidence 4678999999999999999999999999999999
No 91
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=97.13 E-value=0.0087 Score=55.06 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=74.3
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEE
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQV 356 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~V 356 (663)
+..++.|+||+++||+.+||-+.+..|+.... .+--+.|+...+. .+. +.. .++++ .++++|.|...
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~--~~d~~~GG~~~~~----~g~----~~g-~~~~i--~p~~~l~~~w~ 68 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRSPA--KVDAKVGGKFSLF----GGN----ITG-EFVEL--VPGKKIVQKWR 68 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCc--eecCCCCCEEEEe----CCc----eEE-EEEEE--cCCCEEEEEEE
Confidence 56678999999999999999999999986433 2222344443322 111 111 22333 47788877654
Q ss_pred ec--C-CceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHHH
Q 006041 357 EG--D-FDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYVE 418 (663)
Q Consensus 357 eG--d-Fr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~-~L~ALR~RAE 418 (663)
.. + -....-.|+|++.+ ++|+|++....-+. . - ...+..+-.. .+..|++.++
T Consensus 69 ~~~~~~~~~s~v~~~l~~~~-~gT~ltl~~~g~~~------~-~-~~~~~~GW~~~~~~~l~~~~~ 125 (126)
T cd08892 69 FKSWPEGHYSTVTLTFTEKD-DETELKLTQTGVPA------G-E-EERTREGWERYYFESIKQTFG 125 (126)
T ss_pred cCCCCCCCcEEEEEEEEECC-CCEEEEEEEECCCC------c-h-HHHHHhhHHHHHHHHHHHHhC
Confidence 21 1 12456789999975 56999998765431 1 1 1334555554 7788877654
No 92
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=97.13 E-value=0.005 Score=62.14 Aligned_cols=101 Identities=16% Similarity=0.226 Sum_probs=85.7
Q ss_pred cCCceEEEEEEccCCc-ceEEEEEEE-ccCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041 78 EQRKVHCEVEVVSWRE-RRIKAEMLV-NADVDSVWNALTDYERLADFVPNLAC--------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~-rrV~a~i~i-~ap~e~VW~vLTDYe~la~fiP~l~~--------------------------- 128 (663)
..++|.|-....+.+. ..+.+...+ .++++.++++|.|.+.-.+..|++.+
T Consensus 30 ~~~gi~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~R 109 (222)
T cd08871 30 NKNNVKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNR 109 (222)
T ss_pred cCCCeEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCC
Confidence 3456888877777654 458888877 68999999999999999988888866
Q ss_pred ------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhch
Q 006041 129 ------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDL 160 (663)
Q Consensus 129 ------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dL 160 (663)
.+++|.++|.+.+.|+.++|..++..++.+..
T Consensus 110 DfV~~r~~~~~~~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~ 189 (222)
T cd08871 110 DFVNLRSWLEFGGEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQNDPKGSLPKWVVNKATTKLA 189 (222)
T ss_pred eEEEEEEEEeCCCEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEecCCCCCcCHHHHHHHHHHHh
Confidence 24789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccc
Q 006041 161 PVNLQALACRAERSFGWN 178 (663)
Q Consensus 161 p~nL~Ai~~~Ae~~~~~~ 178 (663)
|..|..|++.|++.-+..
T Consensus 190 ~~~l~~l~k~~~~y~~~~ 207 (222)
T cd08871 190 PKVMKKLHKAALKYPEWK 207 (222)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998764443
No 93
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.97 E-value=0.0026 Score=58.84 Aligned_cols=32 Identities=13% Similarity=0.267 Sum_probs=29.5
Q ss_pred EEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041 97 KAEMLVNADVDSVWNALTDYERLADFVPNLAC 128 (663)
Q Consensus 97 ~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~ 128 (663)
..++.|++|++.||+.++|.++|.+++|.+.+
T Consensus 2 ~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~ 33 (137)
T cd07820 2 ERSTVIPAPIEEVFDFHSRPDNLERLTPPWLE 33 (137)
T ss_pred eEEEEcCCCHHHHHHHHcCcchHHhcCCCCCC
Confidence 57899999999999999999999999998755
No 94
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=96.95 E-value=0.0045 Score=61.85 Aligned_cols=93 Identities=12% Similarity=0.128 Sum_probs=81.9
Q ss_pred ceEEEEEEccCCcceEEEEEEEccCHHHHHH-HhhCchhhhhcccccee-------------------------------
Q 006041 81 KVHCEVEVVSWRERRIKAEMLVNADVDSVWN-ALTDYERLADFVPNLAC------------------------------- 128 (663)
Q Consensus 81 ~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~-vLTDYe~la~fiP~l~~------------------------------- 128 (663)
+|.|-....+....-..+...+++|++.|++ ++.|.+...+..+++.+
T Consensus 35 ~i~i~~r~~~~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDf 114 (208)
T cd08868 35 GDVVYSRNVPGVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDF 114 (208)
T ss_pred CCEEEEEEcCCCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccce
Confidence 7888888888755668999999999999986 66799999988888776
Q ss_pred ---------------------------------------------c---CCceEEEEEEEEecCCCCCHHHHHHHHhhch
Q 006041 129 ---------------------------------------------R---SSTTTLSYEVNVIPRLNFPAIFLERIIRSDL 160 (663)
Q Consensus 129 ---------------------------------------------~---~~gT~LtY~v~V~P~f~vP~~lie~~lr~dL 160 (663)
. +++|.++|.+.+.|+.++|..++...+.+-+
T Consensus 115 V~~r~~~~~~~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~ 194 (208)
T cd08868 115 VSLRHWGIRENCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVL 194 (208)
T ss_pred EEEEEEEecCCeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHH
Confidence 1 2569999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006041 161 PVNLQALACRAER 173 (663)
Q Consensus 161 p~nL~Ai~~~Ae~ 173 (663)
+..|.+||+.++.
T Consensus 195 ~~~~~~Lr~~~~~ 207 (208)
T cd08868 195 LDFMKHLRKRIAT 207 (208)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999875
No 95
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=96.82 E-value=0.0078 Score=56.29 Aligned_cols=122 Identities=12% Similarity=0.108 Sum_probs=70.5
Q ss_pred EcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEEecCC--
Q 006041 283 VKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDF-- 360 (663)
Q Consensus 283 I~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~VeGdF-- 360 (663)
++||+++||+.+||-+.+.+|.-. ..+++--+.|+..++.. +. ... .++++ .++++|.|...-...
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~~-~~~~~d~~~GG~f~~~~----~~----~~G-~~~ev--~pp~rlv~tw~~~~~~~ 68 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSLG-SPAEMDAKVGGKFSLFN----GS----VEG-EFTEL--EKPKKIVQKWRFRDWEE 68 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhcC-CCccccCCcCCEEEEec----Cc----eEE-EEEEE--cCCCEEEEEEecCCCCC
Confidence 479999999999999999999521 12333334455433221 11 122 22333 478888877543221
Q ss_pred -ceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHH-HHHHHHHHH
Q 006041 361 -DSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPS-NLCAIRDYV 417 (663)
Q Consensus 361 -r~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~-~L~ALR~RA 417 (663)
.....+|+|++.++++|+|+....--|.... .........+.++... .|+.|+..+
T Consensus 69 ~~~s~vt~~~~~~~~g~T~lt~~~~g~~~~~~-~~~~~~~~~~~~GW~~~~ld~L~~~l 126 (132)
T PTZ00220 69 DVYSKVTIEFRAVEEDHTELKLTQTGIPSLDK-FGNGGCLERCRNGWTQNFLDRFEKIL 126 (132)
T ss_pred CCceEEEEEEEeCCCCcEEEEEEEecCccccc-cCCCchhhHHHhChHHHHHHHHHHHh
Confidence 1346789999976668999998773221100 0000223345566666 477777664
No 96
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=96.39 E-value=0.046 Score=55.05 Aligned_cols=96 Identities=15% Similarity=0.060 Sum_probs=83.0
Q ss_pred cCCceEEEEEEccC-CcceEEEEEEE-ccCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041 78 EQRKVHCEVEVVSW-RERRIKAEMLV-NADVDSVWNALTDYERLADFVPNLAC--------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~-~~rrV~a~i~i-~ap~e~VW~vLTDYe~la~fiP~l~~--------------------------- 128 (663)
..++|.|-....+. +...+.|...+ ++|++.+.++|.|.+.-.+..+++.+
T Consensus 28 ~~~~i~Vy~r~~~~s~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~ 107 (207)
T cd08911 28 EKKDMLVWRREHPGTGLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFAN 107 (207)
T ss_pred EcCceEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCC
Confidence 45678888887774 44568887766 99999999999999999988888877
Q ss_pred ------------------------------------------------c------CCceEEEEEEEEecCCCCCHHHHHH
Q 006041 129 ------------------------------------------------R------SSTTTLSYEVNVIPRLNFPAIFLER 154 (663)
Q Consensus 129 ------------------------------------------------~------~~gT~LtY~v~V~P~f~vP~~lie~ 154 (663)
+ .+||.++|.....|+.++|..++..
T Consensus 108 RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~lvN~ 187 (207)
T cd08911 108 RDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSYITSW 187 (207)
T ss_pred ccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHHHHHH
Confidence 1 3588999999999999999999999
Q ss_pred HHhhchHHHHHHHHHHHHH
Q 006041 155 IIRSDLPVNLQALACRAER 173 (663)
Q Consensus 155 ~lr~dLp~nL~Ai~~~Ae~ 173 (663)
+..+-+|..|+.|++.|.+
T Consensus 188 ~~~~~~~~~l~~l~~a~~~ 206 (207)
T cd08911 188 VAMSGMPDFLERLRNAALK 206 (207)
T ss_pred HHHhhccHHHHHHHHHHhc
Confidence 9999999999999999864
No 97
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=96.26 E-value=0.018 Score=57.79 Aligned_cols=96 Identities=15% Similarity=0.181 Sum_probs=85.8
Q ss_pred cCCceEEEEEEccCCc-ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------
Q 006041 78 EQRKVHCEVEVVSWRE-RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~-rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------- 128 (663)
..+++.|-....+.+. --+.++..|++|++.+.++|.|.+...+.+|++.+
T Consensus 29 ~~~~i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD 108 (215)
T cd08877 29 ESEGIRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVDLPWPLSNRE 108 (215)
T ss_pred cCCCeEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEeCceEecceE
Confidence 3568888888888874 66999999999999999999999999999999776
Q ss_pred ------------------------------------------------------------cCCceEEEEEEEEecCCC-C
Q 006041 129 ------------------------------------------------------------RSSTTTLSYEVNVIPRLN-F 147 (663)
Q Consensus 129 ------------------------------------------------------------~~~gT~LtY~v~V~P~f~-v 147 (663)
.++.|.++|.+.+.|+.. +
T Consensus 109 ~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~I 188 (215)
T cd08877 109 AVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLV 188 (215)
T ss_pred EEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccC
Confidence 135699999999999998 9
Q ss_pred CHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041 148 PAIFLERIIRSDLPVNLQALACRAER 173 (663)
Q Consensus 148 P~~lie~~lr~dLp~nL~Ai~~~Ae~ 173 (663)
|..|+....++-.+..|.+|++.|+.
T Consensus 189 P~~liN~~~k~~~~~~~~~l~k~~~~ 214 (215)
T cd08877 189 PKSLLNFVARKFAGLLFEKIQKAAKN 214 (215)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999974
No 98
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=96.12 E-value=0.25 Score=50.93 Aligned_cols=170 Identities=10% Similarity=0.061 Sum_probs=110.3
Q ss_pred ccCCCceeecccccCCCCcccceEEE-EeeccccccCCeeEEEEEEEEE-cCCHHHHHHHHhccCcccccCcCCcEEEEE
Q 006041 236 DLNSKWGVFGQVCRLDRPCFVDEVHL-RRFDGLLENGGVHRCVVASITV-KAPVSEVWNVMTAYETLPEIVPNLAISKIL 313 (663)
Q Consensus 236 ~~~~~W~~~~~~~gi~~~~~~deV~l-Rr~D~~~e~~g~~r~VrasIvI-~APpeqVWaVLTDyEnyPeWiP~V~sSrVL 313 (663)
++...|+..-+..++ .+.- |+ +.+| .+.++...+. +++|+.|++++.|-|==+.|=..+...+.+
T Consensus 26 ~~~~~We~~~~k~~~-------~i~~q~~-----~~~g-~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~i 92 (219)
T KOG2761|consen 26 DAGQGWELVMDKSTP-------SIWRQRR-----PKTG-LYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETI 92 (219)
T ss_pred CcccchhhhcccCCc-------eEEEEcc-----cCCC-CEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheee
Confidence 445699999999988 7666 32 3344 6656555555 699999999999999999999999999999
Q ss_pred eec---CCEEEEEEEeccceeE-EEEE-EEEEEEEeeeCCCeEEEEEEe--------cCCc--eeEEEEEEE----EcCC
Q 006041 314 SRE---NNKVRILQEGCKGLLY-MVLH-ARVVMDICEQHEQEISFEQVE--------GDFD--SFQGKWLFE----QLGS 374 (663)
Q Consensus 314 er~---gn~vrv~q~g~~gll~-~~~~-~rvVLDV~E~pprrIsfr~Ve--------GdFr--~f~G~WtLe----plgd 374 (663)
+.. |+.+..|...+-.++. -.+. .+.+++..+ ....|.-..+. +..+ .+...|.+. ..++
T Consensus 93 e~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~-k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~ 171 (219)
T KOG2761|consen 93 EEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDE-KDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDE 171 (219)
T ss_pred eecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCC-ceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCC
Confidence 876 4455444443321110 0011 111111100 11112112221 2222 667778777 3345
Q ss_pred CeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhh
Q 006041 375 HHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKRE 421 (663)
Q Consensus 375 GgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~ 421 (663)
.+|.+.|.....| ++.+|.++++..++.+++..++-+-..+.+..
T Consensus 172 ~~~~~~~~~~~~p--~~~iP~~~v~~~~~~gmp~~vkKm~~a~~~Y~ 216 (219)
T KOG2761|consen 172 QGCACEYLYFHNP--GGGIPKWVVKLAVRKGMPGAVKKMEKALLAYQ 216 (219)
T ss_pred CccEEEEEEEECC--CCCCcHHHHHHHHHhcChHHHHHHHHHHHhhh
Confidence 5799999888888 47899999999999999999888877666543
No 99
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=96.05 E-value=0.81 Score=54.26 Aligned_cols=171 Identities=11% Similarity=0.160 Sum_probs=99.4
Q ss_pred CCCceeecccccCCCCcccceEEEEeecccccc--CCeeEEEEEEEEEcCCHHHHHHHHhccC-cccccCcCCcEEEEEe
Q 006041 238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLEN--GGVHRCVVASITVKAPVSEVWNVMTAYE-TLPEIVPNLAISKILS 314 (663)
Q Consensus 238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~--~g~~r~VrasIvI~APpeqVWaVLTDyE-nyPeWiP~V~sSrVLe 314 (663)
.+.|+.++-.+|+ .+.-+-.|. +. .+-.+.+++.-+|+|++++||+.|.+.. .-.+|-..+.+.++++
T Consensus 197 ~~~Wr~~~c~NGl-------RiF~e~~~~--~~~~~~~~~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE 267 (719)
T PLN00188 197 RKHWRLLQCQNGL-------RIFEELLEV--DYLPRSCSRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVE 267 (719)
T ss_pred cCCeEEEEeeccc-------eeehhhhcc--ccccccCCceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEE
Confidence 4599999999999 444332221 10 1123678999999999999999998877 7778999999999998
Q ss_pred ec-CCEEEEEEEecccee-EEEEEEEEE-EEEe-eeCCC--eEEEEEEe--------cCCce--eEEEEEEEEcC--C--
Q 006041 315 RE-NNKVRILQEGCKGLL-YMVLHARVV-MDIC-EQHEQ--EISFEQVE--------GDFDS--FQGKWLFEQLG--S-- 374 (663)
Q Consensus 315 r~-gn~vrv~q~g~~gll-~~~~~~rvV-LDV~-E~ppr--rIsfr~Ve--------GdFr~--f~G~WtLeplg--d-- 374 (663)
+- ++...+|.+...+.+ .+.+.-..+ +++. ...+. .+.+..+. |.++. --|-|.+.|+. +
T Consensus 268 ~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~ 347 (719)
T PLN00188 268 EVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGR 347 (719)
T ss_pred EecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCC
Confidence 74 444344433211110 000000001 0111 11222 23333333 33332 24889999962 2
Q ss_pred CeEEEEEEEEEEeccCccchHHHHHHHHHh---hHHHHHHHHHHHHHhh
Q 006041 375 HHTLLKYSVESKMQKNSLLSEAIMEEVIYE---DLPSNLCAIRDYVEKR 420 (663)
Q Consensus 375 GgTrVtYtve~eP~~gg~LP~~L~er~vre---~L~~~L~ALR~RAEkr 420 (663)
.+|.|++-+.++++ ||.|... ..+-+. .+...+.+||+...+.
T Consensus 348 ~r~lv~~~lqtDlk--GW~~~y~-~s~~~~~~l~mL~~VAgLrE~~~~~ 393 (719)
T PLN00188 348 PRTQVQHLMQIDLK--GWGVGYI-PSFQQHCLLQMLNSVAGLREWFSQT 393 (719)
T ss_pred CceEEEEEEEEccC--ccccccC-ccccccchHHHHHHHHHHHHHHhcC
Confidence 48999999999985 7776543 222223 3334455666665443
No 100
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=95.86 E-value=0.06 Score=54.37 Aligned_cols=96 Identities=8% Similarity=0.000 Sum_probs=80.8
Q ss_pred cCCceEEEEEEccCC-cceEEEEEEEc-cCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041 78 EQRKVHCEVEVVSWR-ERRIKAEMLVN-ADVDSVWNALTDYERLADFVPNLAC--------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~-~rrV~a~i~i~-ap~e~VW~vLTDYe~la~fiP~l~~--------------------------- 128 (663)
+.++|.|-....+.. .....|...++ ++++.+.++|.|.+.-.+..+++.+
T Consensus 32 ~~~~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~~~~~~~~i~y~~~k~PwPvs~RD~ 111 (207)
T cd08910 32 ESSGISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKELYEKECDGETVIYWEVKYPFPLSNRDY 111 (207)
T ss_pred ecCCeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHhheeecCCCCEEEEEEEEcCCCCCCceE
Confidence 456777777655544 45699999998 7999999999998888777776554
Q ss_pred --------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhh
Q 006041 129 --------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRS 158 (663)
Q Consensus 129 --------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~ 158 (663)
..++|.++|...+.|+.++|..++..+..+
T Consensus 112 V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~~~DPgG~IP~wlvN~~~~~ 191 (207)
T cd08910 112 VYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPGGMIPSWLINWAAKN 191 (207)
T ss_pred EEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEEEeCCCCcchHHHHHHHHHH
Confidence 236799999999999999999999999999
Q ss_pred chHHHHHHHHHHHHH
Q 006041 159 DLPVNLQALACRAER 173 (663)
Q Consensus 159 dLp~nL~Ai~~~Ae~ 173 (663)
-+|..|+.|++.|.+
T Consensus 192 ~~~~~l~~l~ka~~~ 206 (207)
T cd08910 192 GVPNFLKDMQKACQN 206 (207)
T ss_pred hhHHHHHHHHHHHhc
Confidence 999999999999864
No 101
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=95.65 E-value=0.13 Score=52.01 Aligned_cols=96 Identities=14% Similarity=0.112 Sum_probs=75.7
Q ss_pred cCCceEEEEEEccCCc-ceEEEEEEEccCHHHHHHHhhCchhh--hhcccccee--------------------------
Q 006041 78 EQRKVHCEVEVVSWRE-RRIKAEMLVNADVDSVWNALTDYERL--ADFVPNLAC-------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~-rrV~a~i~i~ap~e~VW~vLTDYe~l--a~fiP~l~~-------------------------- 128 (663)
..+++.|...+-.... ....++..|++++++|++.|-|.+.. .+..+++.+
T Consensus 29 ~~~~i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p~~~~~~v 108 (208)
T cd08903 29 RTNEVAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTPSAAMKII 108 (208)
T ss_pred cCCCEEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecchhcCCCc
Confidence 3457888887542222 33889999999999999999877554 455555554
Q ss_pred ------------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHH
Q 006041 129 ------------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLER 154 (663)
Q Consensus 129 ------------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~ 154 (663)
.+++|.++|.+.+.|+.++|..++.+
T Consensus 109 s~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~DpkG~iP~~lvn~ 188 (208)
T cd08903 109 SPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLSGYLPQTVVDS 188 (208)
T ss_pred CCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccCCCcCHHHHHH
Confidence 13579999999999999999999999
Q ss_pred HHhhchHHHHHHHHHHHHH
Q 006041 155 IIRSDLPVNLQALACRAER 173 (663)
Q Consensus 155 ~lr~dLp~nL~Ai~~~Ae~ 173 (663)
.+.+-+-..|..||+....
T Consensus 189 ~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 189 FFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred HhhHHHHHHHHHHHHHHhh
Confidence 9999999999999987643
No 102
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=95.38 E-value=0.067 Score=51.02 Aligned_cols=78 Identities=24% Similarity=0.327 Sum_probs=59.7
Q ss_pred CcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-------------------------------------------
Q 006041 92 RERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC------------------------------------------- 128 (663)
Q Consensus 92 ~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~------------------------------------------- 128 (663)
+.+.|...+.|++|++.||++|||-+++.+..|....
T Consensus 9 ~~~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~G~~~~~~~~~~~~~~~~~~v~e~~p~~~l~~~~~~~~~~ 88 (157)
T cd08899 9 GGATLRFERLLPAPIEDVWAALTDPERLARWFAPGTGDLRVGGRVEFVMDDEEGPNATGTILACEPPRLLAFTWGEGGGE 88 (157)
T ss_pred CCeEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCCCCCcccCceEEEEecCCCCCccceEEEEEcCCcEEEEEecCCCCC
Confidence 3467999999999999999999999999988873221
Q ss_pred ---------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041 129 ---------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 174 (663)
Q Consensus 129 ---------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~ 174 (663)
.++||.|+|+.+..|.. .....+..-....|..|++.+|+.
T Consensus 89 ~~~~~~l~~~~~gT~v~~~~~~~~~~-----~~~~~~~~GW~~~L~~Lk~~~e~~ 138 (157)
T cd08899 89 SEVRFELAPEGDGTRLTLTHRLLDER-----FGAGAVGAGWHLCLDVLEAALEGG 138 (157)
T ss_pred ceEEEEEEEcCCCEEEEEEEeccCch-----hhhhhhcccHHHHHHHHHHHHcCC
Confidence 24778888888877655 234555677778888888888753
No 103
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.25 E-value=0.22 Score=47.45 Aligned_cols=90 Identities=19% Similarity=0.247 Sum_probs=72.8
Q ss_pred CCceEEEEEEccCC-cceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------
Q 006041 79 QRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------- 128 (663)
Q Consensus 79 ~~~V~v~~e~l~~~-~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------- 128 (663)
.++|.+-....+.. ...+.+...|+++++.||+.|.|.+....+.|++..
T Consensus 23 ~~~v~vy~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdf 102 (193)
T cd00177 23 KDGVKIYTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDF 102 (193)
T ss_pred CCcEEEEEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccE
Confidence 34677766666653 355899999999999999999999888888887777
Q ss_pred -----------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchH
Q 006041 129 -----------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLP 161 (663)
Q Consensus 129 -----------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp 161 (663)
.+++|.++|.+.+.|+.++|..++...+.+.+.
T Consensus 103 v~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~D~~g~iP~~~~~~~~~~~~~ 182 (193)
T cd00177 103 VYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQVDPKGSIPKSLVNSAAKKQLA 182 (193)
T ss_pred EEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEeeCCCCCccHHHHHhhhhhccH
Confidence 247899999999999999999999999985555
Q ss_pred HHHHHHH
Q 006041 162 VNLQALA 168 (663)
Q Consensus 162 ~nL~Ai~ 168 (663)
..++.++
T Consensus 183 ~~~~~~~ 189 (193)
T cd00177 183 SFLKDLR 189 (193)
T ss_pred HHHHHHH
Confidence 5544443
No 104
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=95.21 E-value=0.21 Score=50.21 Aligned_cols=92 Identities=8% Similarity=-0.030 Sum_probs=78.4
Q ss_pred eEEEEEEcc-CCcceEEEEEEE-ccCHHHHHHHhhCchhhhhcccccee-------------------------------
Q 006041 82 VHCEVEVVS-WRERRIKAEMLV-NADVDSVWNALTDYERLADFVPNLAC------------------------------- 128 (663)
Q Consensus 82 V~v~~e~l~-~~~rrV~a~i~i-~ap~e~VW~vLTDYe~la~fiP~l~~------------------------------- 128 (663)
|.|-....+ .+-....+...+ +++++.+.++|.|.+.-.+..+++.+
T Consensus 37 i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V 116 (209)
T cd08870 37 YQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYV 116 (209)
T ss_pred EEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEE
Confidence 666666555 344568899989 56999999999999999988888776
Q ss_pred --------------------------------------------c---CCceEEEEEEEEecCCCCCHHHHHHHHhhchH
Q 006041 129 --------------------------------------------R---SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLP 161 (663)
Q Consensus 129 --------------------------------------------~---~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp 161 (663)
. +++|.++|+....|+..+|..|+.....+-+|
T Consensus 117 ~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~ 196 (209)
T cd08870 117 IARRLWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGGIPRELAKLAVKRGMP 196 (209)
T ss_pred EEEEEEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCCCCHHHHHHHHHhhhH
Confidence 2 25688999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006041 162 VNLQALACRAER 173 (663)
Q Consensus 162 ~nL~Ai~~~Ae~ 173 (663)
..|+.|++.+.+
T Consensus 197 ~~l~~l~~a~~~ 208 (209)
T cd08870 197 GFLKKLENALRK 208 (209)
T ss_pred HHHHHHHHHHhc
Confidence 999999998853
No 105
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=95.15 E-value=0.094 Score=52.44 Aligned_cols=89 Identities=15% Similarity=0.013 Sum_probs=74.0
Q ss_pred cCCceEEEEEEccCCc--ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041 78 EQRKVHCEVEVVSWRE--RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC--------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~--rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~--------------------------- 128 (663)
+.++|.|-..+++.+. +-+.+.+.|++++++|++.|.|+. .+..+++.+
T Consensus 26 ~~~gi~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~R 103 (197)
T cd08869 26 SSDHVELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTR 103 (197)
T ss_pred cCCcEEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCc
Confidence 4668999999997763 457999999999999999998863 666666666
Q ss_pred -------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhc
Q 006041 129 -------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSD 159 (663)
Q Consensus 129 -------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~d 159 (663)
.+++|+++|.+.+.|+.++|..++...- +-
T Consensus 104 DfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~Dp~G~iP~wl~N~~~-~~ 182 (197)
T cd08869 104 DYVVLRTWRTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVDLRGRSPEWYNKVYG-HL 182 (197)
T ss_pred eEEEEEEEEecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEECCCCCCCceeecchH-hH
Confidence 2367999999999999999999955554 88
Q ss_pred hHHHHHHHHH
Q 006041 160 LPVNLQALAC 169 (663)
Q Consensus 160 Lp~nL~Ai~~ 169 (663)
++.+|..||+
T Consensus 183 ~~~~~~~l~~ 192 (197)
T cd08869 183 CARELLRIRD 192 (197)
T ss_pred HHHHHHHHHh
Confidence 9999999986
No 106
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.14 E-value=0.035 Score=50.90 Aligned_cols=47 Identities=13% Similarity=0.201 Sum_probs=38.2
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhcccccee---------cCCceEEEEEEEE
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------RSSTTTLSYEVNV 141 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------~~~gT~LtY~v~V 141 (663)
+|+.++.|+||++.||++|||++++.+..|+... ..-|+.+.|.+..
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 56 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVFRMAMRL 56 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEEEEEEEc
Confidence 4789999999999999999999999999985221 2356777777764
No 107
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=95.12 E-value=0.092 Score=47.34 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=27.5
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPN 125 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~ 125 (663)
+..++.|+||++.||++|||.+++.+..+.
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheecc
Confidence 567899999999999999999999998876
No 108
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.05 E-value=0.82 Score=44.25 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=78.1
Q ss_pred EEEEEEcCCHHHHHHHHhccCcccccCcCC----cEEEEEeecCCEEEE--EEE-eccc-------eeEEEEEEEEEEEE
Q 006041 278 VASITVKAPVSEVWNVMTAYETLPEIVPNL----AISKILSRENNKVRI--LQE-GCKG-------LLYMVLHARVVMDI 343 (663)
Q Consensus 278 rasIvI~APpeqVWaVLTDyEnyPeWiP~V----~sSrVLer~gn~vrv--~q~-g~~g-------ll~~~~~~rvVLDV 343 (663)
..++.+++|+++||++++|-+-|..=+..+ ..+..+..+++..++ .+. .... ++.-......+-..
T Consensus 2 ~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e~w 81 (159)
T PF10698_consen 2 EHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDGVRVTVRQTVPADKLPSAARKFVGGDLRVTRTETW 81 (159)
T ss_pred eEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCeEEEEEEEecChhhCCHHHHHhcCCCeEEEEEEEE
Confidence 467889999999999999976554433332 333334445544332 221 1101 11000111111111
Q ss_pred eeeCCCeE--EEEE-EecCCceeEEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHH
Q 006041 344 CEQHEQEI--SFEQ-VEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVE 418 (663)
Q Consensus 344 ~E~pprrI--sfr~-VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAE 418 (663)
.-..+... .+.. +.|.--.+.|.-+|++.+ ++|+++++.+++.+ .|+-+..+++.+...+...+..-.+.+.
T Consensus 82 ~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~~~-~gt~~~~~g~v~v~--VPlvGgkiE~~v~~~~~~~~~~e~~~~~ 156 (159)
T PF10698_consen 82 TPLDDGRRTGTFTVSIPGAPVSISGTMRLRPDG-GGTRLTVEGEVKVK--VPLVGGKIEKAVAENLRKLLEAEQEFTA 156 (159)
T ss_pred ecCCCCeEEEEEEEEecCceEEEEEEEEEecCC-CCEEEEEEEEEEEE--EccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00012222 2221 225445889999999955 47999999998864 5566667888888888777777666554
No 109
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=94.35 E-value=0.4 Score=47.90 Aligned_cols=93 Identities=15% Similarity=0.062 Sum_probs=72.4
Q ss_pred CCceEEEEEEccCCc-ceEEEEEEEccCHHHHHHHhhC--chhhhhcccccee---------------------------
Q 006041 79 QRKVHCEVEVVSWRE-RRIKAEMLVNADVDSVWNALTD--YERLADFVPNLAC--------------------------- 128 (663)
Q Consensus 79 ~~~V~v~~e~l~~~~-rrV~a~i~i~ap~e~VW~vLTD--Ye~la~fiP~l~~--------------------------- 128 (663)
.++|.|-..+.+... ..+.+...|++++++|.++|-| .+.....-+++.+
T Consensus 30 ~~~i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~vs 109 (206)
T cd08867 30 VKNITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLIS 109 (206)
T ss_pred CCCcEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCccC
Confidence 356666666443322 4599999999999999999988 5554433343333
Q ss_pred ------------------------------------------------c-----CCceEEEEEEEEecCCCCCHHHHHHH
Q 006041 129 ------------------------------------------------R-----SSTTTLSYEVNVIPRLNFPAIFLERI 155 (663)
Q Consensus 129 ------------------------------------------------~-----~~gT~LtY~v~V~P~f~vP~~lie~~ 155 (663)
. +++|.++|-+.+.|+.++|..++...
T Consensus 110 ~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP~~lvn~~ 189 (206)
T cd08867 110 PRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIPQSLVESA 189 (206)
T ss_pred CcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCcHHHHHhh
Confidence 1 36799999999999999999999999
Q ss_pred HhhchHHHHHHHHHHH
Q 006041 156 IRSDLPVNLQALACRA 171 (663)
Q Consensus 156 lr~dLp~nL~Ai~~~A 171 (663)
+.+-+-..+.+||+..
T Consensus 190 ~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 190 MPSNLVNFYTDLVKGV 205 (206)
T ss_pred hhhhHHHHHHHHHHhc
Confidence 9999999999999863
No 110
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=94.04 E-value=0.3 Score=49.74 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=72.8
Q ss_pred cCCceEEEEEEccCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------
Q 006041 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------- 128 (663)
.+++|.|-....+..-..+.+.+.|++|+++||++|.|.++-.+..+++.+
T Consensus 29 ~~~gI~Vy~k~~~~~~~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~R 108 (205)
T cd08874 29 LEKDVVIYYKVFNGTYHGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPR 108 (205)
T ss_pred cCCCEEEEEecCCCCcceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCC
Confidence 567888888877775566889999999999999999999999988888777
Q ss_pred ------------------------------------------------c---C-CceEEEEEEEEecC-CCCCHHHHHHH
Q 006041 129 ------------------------------------------------R---S-STTTLSYEVNVIPR-LNFPAIFLERI 155 (663)
Q Consensus 129 ------------------------------------------------~---~-~gT~LtY~v~V~P~-f~vP~~lie~~ 155 (663)
. + +.|.|+|.+++.|+ --+|+-|+...
T Consensus 109 DfV~l~~~~~~~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP~~l~N~~ 188 (205)
T cd08874 109 DFCCLQVEAKEGELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVPAQLLSSL 188 (205)
T ss_pred eEEEEEEEEECCCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCCHHHHhHH
Confidence 2 3 46999999999999 79999999988
Q ss_pred HhhchHHHHHHH
Q 006041 156 IRSDLPVNLQAL 167 (663)
Q Consensus 156 lr~dLp~nL~Ai 167 (663)
+.+ .|..+..|
T Consensus 189 ~~~-~p~~~~~~ 199 (205)
T cd08874 189 SKR-QPLVIARL 199 (205)
T ss_pred HHh-ccHHHHHH
Confidence 764 34444433
No 111
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=93.87 E-value=0.29 Score=51.02 Aligned_cols=80 Identities=21% Similarity=0.199 Sum_probs=65.4
Q ss_pred cCCceEEEEEEccCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------
Q 006041 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------- 128 (663)
+.++|.|-...- ..-..+.+++.+++|+++|+++|.|.++..+..+++.+
T Consensus 66 ~~~gI~Vyt~~~-s~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~vY~v~~~p~~~pvs~RD 144 (240)
T cd08913 66 EKNQVRLYTLEE-DKFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDAIYHVTSPSLSGHGKPQD 144 (240)
T ss_pred ccCCEEEEEEeC-CCccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcEEEEEecCCCCCCCCCCe
Confidence 457788887432 22356789999999999999999999999999998888
Q ss_pred --------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhh
Q 006041 129 --------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRS 158 (663)
Q Consensus 129 --------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~ 158 (663)
.++.|.++|..++.|+ .+|..++...+.+
T Consensus 145 fV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~dPG-~LP~~~~N~~~~~ 223 (240)
T cd08913 145 FVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQATPG-VLPYISTDIAGLS 223 (240)
T ss_pred EEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeCCc-cccHHHhhhhhhc
Confidence 2367999999999998 9999999887765
Q ss_pred c
Q 006041 159 D 159 (663)
Q Consensus 159 d 159 (663)
-
T Consensus 224 ~ 224 (240)
T cd08913 224 S 224 (240)
T ss_pred c
Confidence 3
No 112
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=93.71 E-value=0.8 Score=47.47 Aligned_cols=97 Identities=19% Similarity=0.177 Sum_probs=83.1
Q ss_pred cCCceEEEEEEccCCcc---eEEEEEEEc-cCHHHHHHHhhCchhhhhcccccee-------------------------
Q 006041 78 EQRKVHCEVEVVSWRER---RIKAEMLVN-ADVDSVWNALTDYERLADFVPNLAC------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~r---rV~a~i~i~-ap~e~VW~vLTDYe~la~fiP~l~~------------------------- 128 (663)
.+++|.|-....+.... .+.|...|+ ++++.+.++|-|.+.-.+...++.+
T Consensus 33 ~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs 112 (235)
T cd08872 33 EEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAA 112 (235)
T ss_pred eCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCC
Confidence 45678888877776532 589999999 9999999999999999988888776
Q ss_pred -------------------------------------------------c--------------------CCceEEEEEE
Q 006041 129 -------------------------------------------------R--------------------SSTTTLSYEV 139 (663)
Q Consensus 129 -------------------------------------------------~--------------------~~gT~LtY~v 139 (663)
. +++|.++|.+
T Consensus 113 ~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~ 192 (235)
T cd08872 113 QRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVA 192 (235)
T ss_pred CcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEE
Confidence 0 1348999999
Q ss_pred EEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041 140 NVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 174 (663)
Q Consensus 140 ~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~ 174 (663)
.+-|+.++|..++..+-.+..|.-|+.+..-....
T Consensus 193 ~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~~~~ 227 (235)
T cd08872 193 NVNPGGWAPASVLRAVYKREYPKFLKRFTSYVQEK 227 (235)
T ss_pred EeCCCCCccHHHHHHHHHhhchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999887754
No 113
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=93.41 E-value=1.8 Score=41.88 Aligned_cols=128 Identities=19% Similarity=0.168 Sum_probs=76.2
Q ss_pred EEEEEEEcCCHHHHHHHHhccCcccccCcCCcEEEEEeecCCEE----EEEE-Eeccce-eEEEEEEEEEEEEeeeCCCe
Q 006041 277 VVASITVKAPVSEVWNVMTAYETLPEIVPNLAISKILSRENNKV----RILQ-EGCKGL-LYMVLHARVVMDICEQHEQE 350 (663)
Q Consensus 277 VrasIvI~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer~gn~v----rv~q-~g~~gl-l~~~~~~rvVLDV~E~pprr 350 (663)
+....+|.||+|.||+.-+-..++..--|..+ |+-+.+..+ ++.- ...-++ ..+.|.++.+..- ++++.+
T Consensus 4 F~~~~~i~aP~E~VWafhsrpd~lq~LTppw~---VV~p~g~eitqgtri~m~l~pfglp~~~tW~Arhte~~-~d~~~~ 79 (153)
T COG4276 4 FVYRTTITAPHEMVWAFHSRPDALQRLTPPWI---VVLPLGSEITQGTRIAMGLTPFGLPAGLTWVARHTESG-FDNGSR 79 (153)
T ss_pred eEEeeEecCCHHHHhhhhcCccHHHhcCCCcE---EeccCCCcccceeeeeecceeecCCCCceEEEEeeecc-cCCcce
Confidence 34456799999999999999999877777665 232233222 1110 010111 1246777644322 345677
Q ss_pred EEEEEEecCCcee--EEEEEEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHH
Q 006041 351 ISFEQVEGDFDSF--QGKWLFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNL 410 (663)
Q Consensus 351 Isfr~VeGdFr~f--~G~WtLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L 410 (663)
+.=.++.|+|..+ .-...|.+.+ |+|.+.=++.++++. +-+-+.+..+.+.-.+..|+
T Consensus 80 FtDv~i~gPfp~~~WrHtH~F~~eg-g~TvliD~Vsye~p~-g~~~~~~g~~l~q~~l~~mF 139 (153)
T COG4276 80 FTDVCITGPFPALNWRHTHNFVDEG-GGTVLIDSVSYELPA-GTLTGMFGYRLTQLILDLMF 139 (153)
T ss_pred eeeeeecCCccceeeEEEeeeecCC-CcEEEEeeEEeeccC-cceechhhhhhHHHHHHHHH
Confidence 7777889999975 3333677765 479999999998753 32334444444444444443
No 114
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=92.14 E-value=1.6 Score=42.68 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=41.2
Q ss_pred CceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHh
Q 006041 131 STTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERS 174 (663)
Q Consensus 131 ~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~ 174 (663)
+.|.++|..++.|+.++|..++..++.+.+|..++.+++..++.
T Consensus 160 ~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~ 203 (206)
T PF01852_consen 160 GRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQ 203 (206)
T ss_dssp CEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999999999998764
No 115
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=92.03 E-value=0.15 Score=46.57 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=29.8
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhccccc
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNL 126 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l 126 (663)
+|..++.|+||++.||+++||.+++.+..|..
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~ 33 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVK 33 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhccccc
Confidence 68899999999999999999999999998863
No 116
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=91.51 E-value=2.2 Score=43.53 Aligned_cols=92 Identities=11% Similarity=0.093 Sum_probs=73.6
Q ss_pred cCCceEEEEEEc-cCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------
Q 006041 78 EQRKVHCEVEVV-SWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l-~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------- 128 (663)
...++.|...+. +....-..++..|+++++.||+.|-|-+...+.=+++.+
T Consensus 29 ~~~~~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~~~~vsp 108 (204)
T cd08904 29 TSKKITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFAMGSISP 108 (204)
T ss_pred cCCceEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccccCCcccC
Confidence 446788887765 344455889999999999999999998888877777666
Q ss_pred ----------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHH
Q 006041 129 ----------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERII 156 (663)
Q Consensus 129 ----------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~l 156 (663)
.+++|.|+|-+...|+.|+|..+|++.|
T Consensus 109 RDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~lP~~vv~~~~ 188 (204)
T cd08904 109 RDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNLSRSVIEKTM 188 (204)
T ss_pred ceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCCCHHHHHHHh
Confidence 1247999999999999999999999998
Q ss_pred hhchHHHHHHHHH
Q 006041 157 RSDLPVNLQALAC 169 (663)
Q Consensus 157 r~dLp~nL~Ai~~ 169 (663)
.+.+-.-..-+++
T Consensus 189 ~~~~~~f~~~~~~ 201 (204)
T cd08904 189 PTNLVNLILDAKD 201 (204)
T ss_pred HHHHHHHHHHHHH
Confidence 8877666555544
No 117
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=90.86 E-value=1.8 Score=42.45 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=71.6
Q ss_pred CcceEEEEEEEccCHHH-HHHHhhCchhhhhcccccee------------------------------------------
Q 006041 92 RERRIKAEMLVNADVDS-VWNALTDYERLADFVPNLAC------------------------------------------ 128 (663)
Q Consensus 92 ~~rrV~a~i~i~ap~e~-VW~vLTDYe~la~fiP~l~~------------------------------------------ 128 (663)
...-..+...|+++++. +=.++.|.+...++.+++..
T Consensus 43 ~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 43 PGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred ceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 34568999999999997 55788999999988888776
Q ss_pred -----------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHH
Q 006041 129 -----------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAER 173 (663)
Q Consensus 129 -----------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~ 173 (663)
.++.|.++|..++.|+.++|..++...+..-.+..++.+++.+++
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~ 202 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQK 202 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHH
Confidence 235699999999999999999999999999999999999887766
Q ss_pred h
Q 006041 174 S 174 (663)
Q Consensus 174 ~ 174 (663)
.
T Consensus 203 ~ 203 (206)
T smart00234 203 H 203 (206)
T ss_pred H
Confidence 4
No 118
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=89.85 E-value=1.4 Score=44.98 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=62.7
Q ss_pred cCCceEEEEEEccCCc--ceEEEEEEEccCHHHHHHHhhCchhhhhcccccee---------------------------
Q 006041 78 EQRKVHCEVEVVSWRE--RRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC--------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~--rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~--------------------------- 128 (663)
.++.|++..+|...++ +.+.+.+.|+++++.|.+.|.|. -....+++.+
T Consensus 34 ~~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~R 111 (204)
T cd08908 34 TSEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPAR 111 (204)
T ss_pred CCCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCc
Confidence 4678999999998887 66999999999999999888776 4555555555
Q ss_pred ------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHH
Q 006041 129 ------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLER 154 (663)
Q Consensus 129 ------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~ 154 (663)
..++|.|+|.+.+.|+..+|.-++..
T Consensus 112 D~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DPgG~iP~W~~N~ 185 (204)
T cd08908 112 DYVVLRTWRTNLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDLRGHMPEWYTKS 185 (204)
T ss_pred EEEEEEEEEEeCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCCCCCCcHHHHhh
Confidence 23789999999999999999998765
No 119
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=89.21 E-value=2.2 Score=43.64 Aligned_cols=53 Identities=8% Similarity=0.064 Sum_probs=40.1
Q ss_pred eeEE-EEEEEEcC-CCeEEEEEEE--EEEeccCccchHHHHHHHHHhhHHHHHHHHHHH
Q 006041 362 SFQG-KWLFEQLG-SHHTLLKYSV--ESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDY 416 (663)
Q Consensus 362 ~f~G-~WtLeplg-dGgTrVtYtv--e~eP~~gg~LP~~L~er~vre~L~~~L~ALR~R 416 (663)
...| .|++.|.+ ++.+.|+|.+ ..+| +|.+|.|+.|..+-..+......|-+.
T Consensus 149 y~SgE~~~~~p~~~~~~~~vew~maT~sDp--GG~IP~wl~n~~~p~aI~~Dv~~fl~W 205 (208)
T cd08864 149 YASVEKISYLPDADGKSNKVEWIMATRSDA--GGNIPRWLTKLTIPKAIAKDVPLFLDW 205 (208)
T ss_pred EEEEEEEEEcCccCCCcCCEEEEEEEeeCC--CCcCcHHHHhccCchHHHHhHHHHHHH
Confidence 6688 88988875 5567899998 8888 478999999887777666555554443
No 120
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=88.43 E-value=0.42 Score=44.38 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=27.0
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPN 125 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~ 125 (663)
|++++.|+||++.||+++||-++++++.+.
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~ 31 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFT 31 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhcccccc
Confidence 678999999999999999999999996443
No 121
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=87.55 E-value=30 Score=33.86 Aligned_cols=123 Identities=13% Similarity=0.217 Sum_probs=65.4
Q ss_pred CCHHHHHHHHhc-cCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEEecCCcee
Q 006041 285 APVSEVWNVMTA-YETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVEGDFDSF 363 (663)
Q Consensus 285 APpeqVWaVLTD-yEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~VeGdFr~f 363 (663)
-+.++||+=|-. .++=-.|+|.+.+|+|+++.++.+.- ...+.+ ..+..+ ++..++.++.|.+..|.
T Consensus 18 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~~~R-~v~fg~---~~v~E~----v~~~~~~~V~f~~~~Gs---- 85 (149)
T PF08982_consen 18 LTREQLWRGLVLKARNPQLFVPGIDSCEVLSESDTVLTR-EVTFGG---ATVRER----VTLYPPERVDFAQHDGS---- 85 (149)
T ss_dssp --HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SSEEEE-EEEETT---EEEEEE----EEEETTTEEEESSSBEE----
T ss_pred cCHHHHHHHHHHHHhChhhCccccCeEEEEecCCCeEEE-EEEECC---cEEEEE----EEEeCCcEEEEEcCCCC----
Confidence 456899986654 55556799999999999988765422 112222 223444 33458899999333221
Q ss_pred EEEEEEEEcCCCeEEEEEEEEEEec---cCccc---hHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 364 QGKWLFEQLGSHHTLLKYSVESKMQ---KNSLL---SEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 364 ~G~WtLeplgdGgTrVtYtve~eP~---~gg~L---P~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
.-.-.++..++|.=.++|..+...+ .++.- -......+.+.....+++.||+.+..
T Consensus 86 ~lt~~I~e~~~g~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~~~ 147 (149)
T PF08982_consen 86 SLTNIISEPEPGDLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELAKE 147 (149)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred EEEEEEecCCCCcEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 1222444444555566776665532 01110 01236677777888899999988764
No 122
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=87.41 E-value=2.4 Score=41.47 Aligned_cols=82 Identities=13% Similarity=0.284 Sum_probs=67.0
Q ss_pred eEEEEEEEccCHHHHHHHhhCchhhhhcccccee----------------------------------------------
Q 006041 95 RIKAEMLVNADVDSVWNALTDYERLADFVPNLAC---------------------------------------------- 128 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---------------------------------------------- 128 (663)
++..+..|+.+++++++...|++++.+|+|--..
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~e~F~Trv~~~~~~~~I~~~l~~G 82 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERELIAELDVGFKGIRETFTTRVTLKPTARSIDMKLIDG 82 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcceeEEEEEEEhhheeeeeeeeeeecCchhhhhhhhhcC
Confidence 5778889999999999999999999999998766
Q ss_pred --------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHHHHhcc
Q 006041 129 --------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRAERSFG 176 (663)
Q Consensus 129 --------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~Ae~~~~ 176 (663)
.+++|.+.+.++-+..=-+=..++...-..-...+..|..+||...+.
T Consensus 83 PFk~L~~~W~F~pl~~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~ 144 (146)
T COG2867 83 PFKYLKGGWQFTPLSEDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRAKEVYG 144 (146)
T ss_pred ChhhhcCceEEEECCCCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 347788888888777655555566666677777888999999988764
No 123
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=85.95 E-value=2.9 Score=43.72 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=43.3
Q ss_pred cCCceEEEEEEccCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~ 128 (663)
+.++|.|-... +.+-..+.+...+++|+++|+++|.|.++-.+..+++.+
T Consensus 62 ~k~gIkVytr~-~s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e 111 (235)
T cd08873 62 STTSVTLYTLE-QDGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRS 111 (235)
T ss_pred cCCCEEEEEec-CCCceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccE
Confidence 56788888877 444456889999999999999999999999999999988
No 124
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=85.69 E-value=1.8 Score=45.25 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=42.5
Q ss_pred cCCceEEEEEEccCCcceEEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041 78 EQRKVHCEVEVVSWRERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~ 128 (663)
+.++|.|-... +..--.+.+.+.+++|++++.++|.|.++..+.++++.+
T Consensus 63 dkdgIkVytr~-~s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e 112 (236)
T cd08914 63 TVEKIKIYTLE-EHDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLS 112 (236)
T ss_pred ccCCEEEEEec-CCCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhce
Confidence 56788888874 222356899999999999999999999999999999988
No 125
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=82.33 E-value=14 Score=38.02 Aligned_cols=92 Identities=13% Similarity=0.007 Sum_probs=73.5
Q ss_pred CCceEEEEEEccCC-cceEEEEEEEccCHHHHHHHhhCchhhhhcccccee-----------------------------
Q 006041 79 QRKVHCEVEVVSWR-ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC----------------------------- 128 (663)
Q Consensus 79 ~~~V~v~~e~l~~~-~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~----------------------------- 128 (663)
.++|.|..+.-+.. -.--+++-.|+..++.||+.|.+=.+..++=|++.+
T Consensus 31 ~~~~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpR 110 (202)
T cd08902 31 SKDVTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPR 110 (202)
T ss_pred CCCEEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCCcCccCcc
Confidence 37888888866433 334566777789999999999987766677777766
Q ss_pred ------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhhch
Q 006041 129 ------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRSDL 160 (663)
Q Consensus 129 ------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~dL 160 (663)
.+..|.|++-++..++.|+|..+|++.|-+.+
T Consensus 111 DFVdv~~~~~~~d~~~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~LPqsiIdq~~~~~~ 190 (202)
T cd08902 111 EFVDFSYTTQYEDGLLSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGMLPQSAVDTAMASTL 190 (202)
T ss_pred ceEEEEEEEEeCCCeEEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCCccHHHHHHHhhHHH
Confidence 23567899999999999999999999999998
Q ss_pred HHHHHHHHHH
Q 006041 161 PVNLQALACR 170 (663)
Q Consensus 161 p~nL~Ai~~~ 170 (663)
-.-+..+|++
T Consensus 191 ~~F~~~Lrk~ 200 (202)
T cd08902 191 VNFYSDLKKA 200 (202)
T ss_pred HHHHHHHHHh
Confidence 8888888775
No 126
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=81.79 E-value=5.4 Score=34.86 Aligned_cols=52 Identities=25% Similarity=0.340 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHHHhCCC-CCCCCHHHHHhcCcccH---HHHHHHhcCHHHHHHHcCc
Q 006041 481 TNIEVLKAELLEFISKHGQE-GFMPMRKQLRKHGRVDV---EKAITRMGGFRRMASLMNL 536 (663)
Q Consensus 481 ~~~~~L~~eL~~f~~~~G~~-g~mP~~~~Lr~~gr~dl---~~aI~~~GG~~~vA~~lg~ 536 (663)
++-+.--..|.+|+...|.. -.-|. +.....|| +++|..+|||.+|.+.=.|
T Consensus 5 ~~~~~F~~~L~~f~~~~g~~~~~~P~----i~g~~vDL~~Ly~~V~~~GG~~~V~~~~~W 60 (92)
T PF01388_consen 5 REREQFLEQLREFHESRGTPIDRPPV----IGGKPVDLYKLYKAVMKRGGFDKVTKNKKW 60 (92)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSS-SE----ETTSE-SHHHHHHHHHHHTSHHHHHHHTTH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCCc----CCCEeCcHHHHHHHHHhCcCcccCcccchH
Confidence 44556677899999999976 23344 55556665 4599999999776554333
No 127
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=79.22 E-value=1.9 Score=39.63 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=26.9
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPN 125 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~ 125 (663)
|...+.++||++.||+++||=+++.++++.
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~ 31 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFA 31 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCC
Confidence 567899999999999999999999999643
No 128
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=79.22 E-value=1.9 Score=40.46 Aligned_cols=26 Identities=12% Similarity=0.321 Sum_probs=22.3
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcc
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFV 123 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fi 123 (663)
|+.++.|+||++.||+++|| .|.+-.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~ 27 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWW 27 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhcc
Confidence 67899999999999999999 466554
No 129
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=78.30 E-value=2.1 Score=39.96 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=25.7
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVP 124 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP 124 (663)
|.....|+||++.||+++||-++|.+..+
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~ 30 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLP 30 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCC
Confidence 45567799999999999999999999775
No 130
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=78.28 E-value=3.4 Score=39.59 Aligned_cols=53 Identities=26% Similarity=0.286 Sum_probs=38.9
Q ss_pred CcceEEEEEEEccCHHHHHHHhhCchhhhhccc-----cceecCCceEEEEEEEEecC
Q 006041 92 RERRIKAEMLVNADVDSVWNALTDYERLADFVP-----NLACRSSTTTLSYEVNVIPR 144 (663)
Q Consensus 92 ~~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP-----~l~~~~~gT~LtY~v~V~P~ 144 (663)
..+.|.....|++|++.||+.|||=+.|++.+. .=...+++....|....-+.
T Consensus 6 ~~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~~~~~~~d~r~gg~~~~~~~~~~g~~ 63 (149)
T COG3832 6 EDRTLEIERLIDAPPEKVFEALTDPELLARWFMPGGAEFDARTGGGERVRFRGPDGPV 63 (149)
T ss_pred CCceEEEEEeecCCHHHHHHHhcCHHHHHhhcCCCCCccceecCCceEEeeecCCCCe
Confidence 346688889999999999999999999999998 11113455555555544444
No 131
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=76.95 E-value=77 Score=30.97 Aligned_cols=91 Identities=13% Similarity=0.189 Sum_probs=55.0
Q ss_pred CCHHHHHHHH-hccCcccccCcCCcEEEEEeecCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCCeEEEEEEe-cCCce
Q 006041 285 APVSEVWNVM-TAYETLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQEISFEQVE-GDFDS 362 (663)
Q Consensus 285 APpeqVWaVL-TDyEnyPeWiP~V~sSrVLer~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~pprrIsfr~Ve-GdFr~ 362 (663)
-+.+|+|+=| .-.++--.|+|.+.+|+|++++++.+ .+...+.. ...... ++..++.++.|.+.. |.
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~~l-~Rel~f~~---~~v~e~----vt~~~~~~v~f~~~~~g~--- 85 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGTVL-ERELTFGP---AKIRET----VTLEPPSRVHFLQADAGG--- 85 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCCCEE-EEEEEECC---ceEEEE----EEecCCcEEEEEecCCCC---
Confidence 4578999855 56677778999999999999887643 12212222 122333 334588999998776 31
Q ss_pred eEEEEEEEEcCCCeEEEEEEEEEEe
Q 006041 363 FQGKWLFEQLGSHHTLLKYSVESKM 387 (663)
Q Consensus 363 f~G~WtLeplgdGgTrVtYtve~eP 387 (663)
.-.=.++...+|.=.++|..+...
T Consensus 86 -~l~~~iee~~~g~L~lrf~ye~~~ 109 (141)
T cd08863 86 -TLTNTIEEPEDGALYLRFVYETTL 109 (141)
T ss_pred -eEEEEeccCCCCcEEEEEEEEecC
Confidence 112234444455555666665543
No 132
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=76.18 E-value=8.2 Score=34.32 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=37.0
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCCCCCHHHHHhcCcccHHHHHHHhcCH
Q 006041 480 QTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGF 527 (663)
Q Consensus 480 ~~~~~~L~~eL~~f~~~~G~~g~mP~~~~Lr~~gr~dl~~aI~~~GG~ 527 (663)
|-.+++-.+=+.+|+..+| +||..+|.++.-.+|...|..+|=+
T Consensus 8 q~s~~~a~~~~~~l~~~~g----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 8 QTSIKAARKIYRRLFERYG----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp TS-HHHHHHHHHHHHHHHS----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred cCcHHHHHHHHHHHHHHhc----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 4456677777888999998 9999999999999999999996655
No 133
>COG2005 ModE N-terminal domain of molybdenum-binding protein [General function prediction only]
Probab=75.37 E-value=1.4 Score=42.20 Aligned_cols=47 Identities=26% Similarity=0.479 Sum_probs=39.4
Q ss_pred HHHhcCcccHHHHHHHhcCHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHH
Q 006041 508 QLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR 561 (663)
Q Consensus 508 ~Lr~~gr~dl~~aI~~~GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~ 561 (663)
..+..||+-|.+||...|-..+.|+.||++ | +..|+-++++++-+.+
T Consensus 15 ~~~g~g~~~LL~~I~etGSIs~AAk~~GiS--Y-----k~AW~~i~~~n~~~~~ 61 (130)
T COG2005 15 LRAGPGRIELLKAIAETGSISAAAKAAGIS--Y-----KSAWDYIKALNRLLGE 61 (130)
T ss_pred cccCchHHHHHHHHHHhCCHHHHHHHcCCC--H-----HHHHHHHHHHHHHhCC
Confidence 345689999999999999999999999999 6 4578878887766555
No 134
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=75.26 E-value=15 Score=37.36 Aligned_cols=36 Identities=14% Similarity=0.314 Sum_probs=32.3
Q ss_pred cceEEEEEEEccCHHHHHHHhhCchhhhhcccccee
Q 006041 93 ERRIKAEMLVNADVDSVWNALTDYERLADFVPNLAC 128 (663)
Q Consensus 93 ~rrV~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~ 128 (663)
.-.|+.+|.|++|.++||++-.|.|+|..|+--|.+
T Consensus 69 ~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~S 104 (217)
T COG5637 69 PIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDS 104 (217)
T ss_pred ceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhce
Confidence 345888999999999999999999999999887776
No 135
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=72.00 E-value=3.9 Score=37.94 Aligned_cols=29 Identities=34% Similarity=0.391 Sum_probs=26.0
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVP 124 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP 124 (663)
|..+..|+||++.||++|||=+++++.++
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~ 30 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWG 30 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccC
Confidence 56678899999999999999999999874
No 136
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=71.57 E-value=35 Score=35.29 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=66.7
Q ss_pred cCCceEEEEEEccCCc--ceEEEEEEEcc-CHHHHHHHhhCchhhhhcccccee--------------------------
Q 006041 78 EQRKVHCEVEVVSWRE--RRIKAEMLVNA-DVDSVWNALTDYERLADFVPNLAC-------------------------- 128 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~--rrV~a~i~i~a-p~e~VW~vLTDYe~la~fiP~l~~-------------------------- 128 (663)
+..+|+|..++.+.+. +-+.+.+.|++ |.+.+.++|-|=..|. ++|.+
T Consensus 34 ~~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~WD---~~m~e~~~Ie~Ld~n~dI~yY~~~~~~p~p~ 110 (205)
T cd08907 34 GPDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLWD---EDLLHSQVIEALENNTEVYHYVTDSMAPHPR 110 (205)
T ss_pred CCCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhchhhhh---HHHHhhhhheeecCCCEEEEEEecCCCCCCC
Confidence 4678999999999877 77999999997 5566677777622221 11111
Q ss_pred --------------------------------------------------cCCceEEEEEEEEecCCCCCHHHHHHHHhh
Q 006041 129 --------------------------------------------------RSSTTTLSYEVNVIPRLNFPAIFLERIIRS 158 (663)
Q Consensus 129 --------------------------------------------------~~~gT~LtY~v~V~P~f~vP~~lie~~lr~ 158 (663)
.+++|+|+|-..+.|+...|.-. ++.-..
T Consensus 111 RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~~P~Wy-nk~~g~ 189 (205)
T cd08907 111 RDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGRSPDWY-NKVFGH 189 (205)
T ss_pred ceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCCCcHHH-HHhHHH
Confidence 24789999999999999999998 877777
Q ss_pred chHHHHHHHHH
Q 006041 159 DLPVNLQALAC 169 (663)
Q Consensus 159 dLp~nL~Ai~~ 169 (663)
-+...|..||.
T Consensus 190 ~~a~~l~~ir~ 200 (205)
T cd08907 190 LCAMEVARIRD 200 (205)
T ss_pred HHHHHHHHHHh
Confidence 77777777764
No 137
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=71.52 E-value=2 Score=34.96 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=28.1
Q ss_pred ccHHHHHHHhcCHHHHHHHcCchhhhcccCCCCccCChHHHHHHH
Q 006041 515 VDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEI 559 (663)
Q Consensus 515 ~dl~~aI~~~GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el 559 (663)
..+.-+|..+|.+.++|+.||.+. ...|..+.+|++++
T Consensus 4 l~~f~~v~~~gs~~~AA~~l~is~-------~~vs~~i~~LE~~l 41 (60)
T PF00126_consen 4 LRYFLAVAETGSISAAAEELGISQ-------SAVSRQIKQLEEEL 41 (60)
T ss_dssp HHHHHHHHHHSSHHHHHHHCTSSH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHhhccc-------hHHHHHHHHHHHHh
Confidence 346779999999999999999993 34555555555444
No 138
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=71.41 E-value=7.4 Score=35.73 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=30.3
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccccee---cCCce
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPNLAC---RSSTT 133 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~l~~---~~~gT 133 (663)
+.-...|+||++.||+.+||=+.+..++..... .+||+
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~~~~~d~~~GG~ 42 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRSPAKVDAKVGGK 42 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCCCceecCCCCCE
Confidence 556789999999999999999999998754333 45655
No 139
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=71.22 E-value=4.4 Score=38.61 Aligned_cols=34 Identities=15% Similarity=0.378 Sum_probs=27.7
Q ss_pred eEEEEEEEccCHHHHHHHhhCchh-hh-hcccccee
Q 006041 95 RIKAEMLVNADVDSVWNALTDYER-LA-DFVPNLAC 128 (663)
Q Consensus 95 rV~a~i~i~ap~e~VW~vLTDYe~-la-~fiP~l~~ 128 (663)
.+..++.|+||+++||+++.|+++ +. .+.|.+.+
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~ 37 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKS 37 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccE
Confidence 478899999999999999999994 54 45665655
No 140
>COG4891 Uncharacterized conserved protein [Function unknown]
Probab=70.39 E-value=16 Score=33.36 Aligned_cols=71 Identities=14% Similarity=0.026 Sum_probs=47.9
Q ss_pred CCCeEEEEEEecCCceeEEEE--EEEEcCCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 347 HEQEISFEQVEGDFDSFQGKW--LFEQLGSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 347 pprrIsfr~VeGdFr~f~G~W--tLeplgdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
+-+++.|..--..-..++|.- .++++.++.|++.....|.+-...+++. +.+-+...+.++..++|+++|+
T Consensus 20 P~reL~W~~~~~~~~l~~~~~~~~le~~~~~~t~~~q~e~F~Gvlv~fv~~--lr~~~~~~f~~~n~alr~raE~ 92 (93)
T COG4891 20 PLRELTWLGNVRFPGLLDGERYFELEALWGGRTRFAQGESFSGVLVPFVSE--LRRGLTASFENMNPALRARAEA 92 (93)
T ss_pred cchheeeecccccceEEeeEEEEEEeecCCccceeeccceecceeeccchh--hhccchhhhhhhCHHHHhhhhc
Confidence 568899974322112455555 6677888899998888887421112232 5666777888999999999986
No 141
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=70.01 E-value=4.3 Score=37.93 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=25.9
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhccc
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVP 124 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP 124 (663)
|.-+..|+||++.||+++||=+++.+..+
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~ 30 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFC 30 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCC
Confidence 45678899999999999999999999875
No 142
>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised.
Probab=66.21 E-value=1.2e+02 Score=29.48 Aligned_cols=101 Identities=18% Similarity=0.183 Sum_probs=54.6
Q ss_pred cCCEEEEEEEeccceeEEEEEEEEEEEEeeeCCC----eEEEEEEec--C------Cc-eeEEEEEEEEcCCCeEEEEEE
Q 006041 316 ENNKVRILQEGCKGLLYMVLHARVVMDICEQHEQ----EISFEQVEG--D------FD-SFQGKWLFEQLGSHHTLLKYS 382 (663)
Q Consensus 316 ~gn~vrv~q~g~~gll~~~~~~rvVLDV~E~ppr----rIsfr~VeG--d------Fr-~f~G~WtLeplgdGgTrVtYt 382 (663)
.+++-++....+ .++.+.....+.+++....+. ...++. .| . |. .+.|.-...+ .++.|.|.++
T Consensus 28 ~~~~yr~~~~~~-~~~~~~v~P~v~l~v~~~~~~~~i~~~~~~l-~G~~~~~~~~~f~l~~~~~l~~~~-~~~~t~l~~~ 104 (158)
T PF09366_consen 28 GDNTYRLKMRPF-QFFGFEVEPVVDLRVWPQDDGLTIRSLDCEL-RGSPLVEQNDGFSLDLQASLYPEE-PPGRTRLEGD 104 (158)
T ss_pred CCCeEEEEEcCc-cEEEEEEEEEEEEEEEEcCCCeEEEEEEEEE-eCCCccccCCcEEEEEEEEEEEec-CCCceEEEEE
Confidence 334444443333 334456666666666654443 122222 23 1 11 3444444444 4457888887
Q ss_pred EEEEe-----ccCccchHHHHHHHHHhhHHHHHHHHHHHHHh
Q 006041 383 VESKM-----QKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEK 419 (663)
Q Consensus 383 ve~eP-----~~gg~LP~~L~er~vre~L~~~L~ALR~RAEk 419 (663)
+++.. +.-.++|..+++..-...+..++..++.++-.
T Consensus 105 ~~l~V~v~~P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~~ 146 (158)
T PF09366_consen 105 ADLSVSVELPPPFRLLPESLLESTGNAVLQQILRQIKPRFLQ 146 (158)
T ss_pred EEEEEEEEcChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77663 11124677777777777777777777777654
No 143
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=66.01 E-value=36 Score=34.98 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=31.5
Q ss_pred cCCceEEEEEEccCCc--ceEEEEEEEccCHHHHHHHhhCc
Q 006041 78 EQRKVHCEVEVVSWRE--RRIKAEMLVNADVDSVWNALTDY 116 (663)
Q Consensus 78 ~~~~V~v~~e~l~~~~--rrV~a~i~i~ap~e~VW~vLTDY 116 (663)
+++++++...+...+. +-.++.+.|+++++.|=..+.++
T Consensus 34 ~~~~~e~~ykK~~d~~~lk~~r~~~ei~~~p~~VL~~vl~~ 74 (205)
T cd08909 34 SSDNTELAYKKVGDGNPLRLWKVSVEVEAPPSVVLNRVLRE 74 (205)
T ss_pred CcCCeEEEEecCCCCCceEEEEEEEEeCCCHHHHHHHHHhh
Confidence 4577888888887765 67999999999999997766663
No 144
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=64.67 E-value=1.9e+02 Score=30.44 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=31.7
Q ss_pred EEEEEEEEcCCHHHHHHHHhccCcccccCcC-CcEEEEEe
Q 006041 276 CVVASITVKAPVSEVWNVMTAYETLPEIVPN-LAISKILS 314 (663)
Q Consensus 276 ~VrasIvI~APpeqVWaVLTDyEnyPeWiP~-V~sSrVLe 314 (663)
..+++-.|...+..+.++|.|...|.+++|. |.++++++
T Consensus 61 ASR~~glV~m~~~~lVe~lmD~~kW~~~Fp~iv~~a~tl~ 100 (229)
T cd08875 61 ASRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQ 100 (229)
T ss_pred EEeeeEEEecCHHHHHHHHhChhhhhhhhhhhcceeeEEE
Confidence 4667788899999999999999999997776 45556554
No 145
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=64.50 E-value=3.9 Score=36.18 Aligned_cols=20 Identities=50% Similarity=0.785 Sum_probs=17.6
Q ss_pred ccCHHHHHHHhhCchhhhhc
Q 006041 103 NADVDSVWNALTDYERLADF 122 (663)
Q Consensus 103 ~ap~e~VW~vLTDYe~la~f 122 (663)
+||++.||+++||-++++++
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W 20 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW 20 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH
T ss_pred CcCHHHHHHHHCCHhHHhhc
Confidence 58899999999999888888
No 146
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=63.66 E-value=7.1 Score=36.50 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=26.2
Q ss_pred EEEEEEEccCHHHHHHHhhCchhhhhcccc
Q 006041 96 IKAEMLVNADVDSVWNALTDYERLADFVPN 125 (663)
Q Consensus 96 V~a~i~i~ap~e~VW~vLTDYe~la~fiP~ 125 (663)
|...-.++||++.||+++||=+++++++..
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p 31 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGP 31 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCC
Confidence 455678999999999999999999999864
No 147
>TIGR00637 ModE_repress ModE molybdate transport repressor domain. ModE is a molybdate-activated repressor of the molybdate transport operon in E. coli. It consists of the domain represented by this model and two tandem copies of mop-like domain, where Mop proteins are a family of 68-residue molybdenum-pterin binding proteins of Clostridium pasteurianum. This model also represents the full length of a pair of archaeal proteins that lack Mop-like domains. PSI-BLAST analysis shows similarity to helix-turn-helix regulatory proteins.
Probab=62.06 E-value=4.6 Score=36.60 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=30.4
Q ss_pred cHHHHHHHhcCHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHH
Q 006041 516 DVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR 561 (663)
Q Consensus 516 dl~~aI~~~GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~ 561 (663)
-+..||..+|.+.++|++||.+ +..-|..+..|+++|..
T Consensus 8 ~~~~av~~~gSis~AA~~L~iS-------~stvs~~I~~LE~~lg~ 46 (99)
T TIGR00637 8 ALLKAIARMGSISQAAKDAGIS-------YKSAWDYIRAMNNLSGE 46 (99)
T ss_pred HHHHHHHHhCCHHHHHHHHCCC-------HHHHHHHHHHHHHHhCC
Confidence 3678999999999999999999 34556666666666544
No 148
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=60.18 E-value=7.7 Score=34.27 Aligned_cols=45 Identities=16% Similarity=0.385 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHhCCC-CCCCCHHHHHhcCcccH---HHHHHHhcCHHHH
Q 006041 482 NIEVLKAELLEFISKHGQE-GFMPMRKQLRKHGRVDV---EKAITRMGGFRRM 530 (663)
Q Consensus 482 ~~~~L~~eL~~f~~~~G~~-g~mP~~~~Lr~~gr~dl---~~aI~~~GG~~~v 530 (663)
+.+.--..|.+|+...|.. -..|. +.....|| +.+|.++|||.+|
T Consensus 2 ~~~~F~~~L~~F~~~~g~~~~~~P~----i~g~~vdL~~Ly~~V~~~GG~~~v 50 (93)
T smart00501 2 ERVLFLDRLYKFMEERGSPLKKIPV----IGGKPLDLYRLYRLVQERGGYDQV 50 (93)
T ss_pred cHHHHHHHHHHHHHHcCCcCCcCCe----ECCEeCcHHHHHHHHHHccCHHHH
Confidence 3455678899999999864 12232 35555665 5699999998864
No 149
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=59.50 E-value=37 Score=32.87 Aligned_cols=42 Identities=19% Similarity=0.119 Sum_probs=31.4
Q ss_pred CCceEEEEEEEEecCCCCCHHHHHHHHhhchHHHHHHHHHHH
Q 006041 130 SSTTTLSYEVNVIPRLNFPAIFLERIIRSDLPVNLQALACRA 171 (663)
Q Consensus 130 ~~gT~LtY~v~V~P~f~vP~~lie~~lr~dLp~nL~Ai~~~A 171 (663)
++||.+.|+.+|+-++++=..-||+.+...+-..|.+-.+.+
T Consensus 114 ~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~~~ 155 (159)
T PF10698_consen 114 GGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLEAEQEFT 155 (159)
T ss_pred CCCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888877777888888777777666555444
No 150
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=59.36 E-value=4.6 Score=35.90 Aligned_cols=64 Identities=19% Similarity=0.320 Sum_probs=36.8
Q ss_pred CHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHHHHHHh----CCCCCCCCCHHHHHHhchHHHHHHHH
Q 006041 526 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSW----GMDPSFMPSRKSFERAGRYDIARALE 592 (663)
Q Consensus 526 G~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~f~~~~----g~~~~~mPt~~~l~~agR~Dl~~Al~ 592 (663)
-|..+|.+||++.+-=.+--. +|-.++.+........| |-....---...|..+||.||++.|+
T Consensus 17 dW~~Lar~L~vs~~dI~~I~~---e~p~~l~~Q~~~~L~~W~~r~g~~At~~~L~~AL~~i~R~div~~~~ 84 (84)
T cd08805 17 SWAELARELQFSVEDINRIRV---ENPNSLLEQSTALLNLWVDREGENAKMSPLYPALYSIDRLTIVNMLE 84 (84)
T ss_pred hHHHHHHHcCCCHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhcCccchHHHHHHHHHHCChHHHHHhhC
Confidence 378899999998531000000 11123444444444444 44333334467899999999999874
No 151
>PRK10676 DNA-binding transcriptional regulator ModE; Provisional
Probab=56.18 E-value=4.9 Score=42.39 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=36.4
Q ss_pred hcCcccHHHHHHHhcCHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHH
Q 006041 511 KHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR 561 (663)
Q Consensus 511 ~~gr~dl~~aI~~~GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~ 561 (663)
..++..+..+|..+|.|.+.|++||++ .+.-|.-+.+|++++-.
T Consensus 18 ~~~~l~~l~~v~~~gS~s~AA~~l~~s-------~~a~s~~i~~le~~lg~ 61 (263)
T PRK10676 18 DPRRISLLKQIALTGSISQGAKLAGIS-------YKSAWDAINEMNQLSEH 61 (263)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHhCCC-------HHHHHHHHHHHHHHhCC
Confidence 456677889999999999999999999 35678888888877654
No 152
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=53.29 E-value=14 Score=34.38 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.3
Q ss_pred EEEEccCHHHHHHHhhCchhhhhccc
Q 006041 99 EMLVNADVDSVWNALTDYERLADFVP 124 (663)
Q Consensus 99 ~i~i~ap~e~VW~vLTDYe~la~fiP 124 (663)
.-.++||++.||+++||=++|++.+.
T Consensus 5 ~r~~~ap~e~Vw~a~tdp~~l~~W~~ 30 (143)
T cd08900 5 ERTYPAPPERVFAAWSDPAARARWFV 30 (143)
T ss_pred EEEeCCCHHHHHHHhcCHHHHHhcCC
Confidence 45699999999999999999998874
No 153
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=51.49 E-value=34 Score=27.08 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=29.2
Q ss_pred cCCCCccCChHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Q 006041 543 RKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSRKSFE 580 (663)
Q Consensus 543 r~p~gyw~~~~~l~~el~~f~~~~g~~~~~mPt~~~l~ 580 (663)
-...|+|+ +.+++.|+.||+..|+++.-.....+++
T Consensus 20 ~~~~g~~~--~~t~~Av~~fQ~~~gL~~tG~~d~~T~~ 55 (57)
T PF01471_consen 20 GPVDGIFD--PETREAVKAFQKANGLPVTGVVDPETWE 55 (57)
T ss_dssp SSTTSBSH--HHHHHHHHHHHHHTTS-SSSSBCHHHHH
T ss_pred CCCCCCcC--HHHHHHHHHHHHHcCcCCCCccCHHHHh
Confidence 45779999 9999999999999999987777666654
No 154
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=49.40 E-value=15 Score=32.37 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHHhcCHHHHH
Q 006041 554 NLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVS 601 (663)
Q Consensus 554 ~l~~el~~f~~~~g~~~~~mPt~~~l~~agR~Dl~~Al~~~GG~~~va 601 (663)
.--+.|.+|+++.|.+....|.. +=....=|.|.++|.+.||+.+|.
T Consensus 5 ~F~~~L~~F~~~~g~~~~~~P~i-~g~~vdL~~Ly~~V~~~GG~~~v~ 51 (93)
T smart00501 5 LFLDRLYKFMEERGSPLKKIPVI-GGKPLDLYRLYRLVQERGGYDQVT 51 (93)
T ss_pred HHHHHHHHHHHHcCCcCCcCCeE-CCEeCcHHHHHHHHHHccCHHHHc
Confidence 44567899999999875566654 223344478999999999998754
No 155
>PF13309 HTH_22: HTH domain
Probab=45.04 E-value=18 Score=30.29 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHH------hcCHHHHHHHhcc
Q 006041 554 NLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEK------WGGLHEVSRLLSL 606 (663)
Q Consensus 554 ~l~~el~~f~~~~g~~~~~mPt~~~l~~agR~Dl~~Al~~------~GG~~~va~~lg~ 606 (663)
.+++-|..++.+.|.++..|+... |-+|++.|.. =|.+..||+.||.
T Consensus 2 ~i~~~i~~~~~~~~~~~~~l~~~~------k~~iV~~L~~~G~F~lKgav~~vA~~L~i 54 (64)
T PF13309_consen 2 LIESIIEEVIAEVGKPPSRLSKEE------KKEIVRQLYEKGIFLLKGAVEYVAEKLGI 54 (64)
T ss_pred hHHHHHHHHHHHhCCChhhCCHHH------HHHHHHHHHHCCCcccCcHHHHHHHHHCC
Confidence 466778888899999988887654 3345555544 3566789999986
No 156
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=42.14 E-value=22 Score=31.06 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=33.4
Q ss_pred CHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHHHHHHh----CCCCCCCCCHHHHHHhchHHHHHHHH
Q 006041 526 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSW----GMDPSFMPSRKSFERAGRYDIARALE 592 (663)
Q Consensus 526 G~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~f~~~~----g~~~~~mPt~~~l~~agR~Dl~~Al~ 592 (663)
.|..+|.+||++-.-=.+--..| -.++.+...+....| |.....=--...|+++||.||+..++
T Consensus 17 dW~~LAr~Lg~~~~dI~~i~~~~---~~~~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i~r~Di~~~~~ 84 (84)
T cd08317 17 DWPQLARELGVSETDIDLIKAEN---PNSLAQQAQAMLKLWLEREGKKATGNSLEKALKKIGRDDIVEKCE 84 (84)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHC---CCCHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHcChHHHHHHhC
Confidence 57889999999842000000001 112223344444444 33222112256788899999998764
No 157
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=41.15 E-value=20 Score=31.88 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=35.0
Q ss_pred CHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHHHHHHh----CCCCCCCCCHHHHHHhchHHHHHHHH
Q 006041 526 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSW----GMDPSFMPSRKSFERAGRYDIARALE 592 (663)
Q Consensus 526 G~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~f~~~~----g~~~~~mPt~~~l~~agR~Dl~~Al~ 592 (663)
.|..+|..||++-.-=.+-... +-.++.+........| |-+..+=--...|.++||.||+..|+
T Consensus 17 dW~~LA~eLg~s~~dI~~i~~e---~p~~~~~q~~~lL~~W~~r~g~~At~~~L~~aL~~i~R~DIv~~~~ 84 (84)
T cd08803 17 SWTELARELNFSVDEINQIRVE---NPNSLIAQSFMLLKKWVTRDGKNATTDALTSVLTKINRIDIVTLLE 84 (84)
T ss_pred cHHHHHHHcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHCCcHHHHHhcC
Confidence 5889999999994310000011 1123443344444444 32221112256789999999998874
No 158
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=39.77 E-value=1e+02 Score=32.31 Aligned_cols=28 Identities=14% Similarity=0.335 Sum_probs=25.9
Q ss_pred EEccCHHHHHHHhhCchhhhhcccccee
Q 006041 101 LVNADVDSVWNALTDYERLADFVPNLAC 128 (663)
Q Consensus 101 ~i~ap~e~VW~vLTDYe~la~fiP~l~~ 128 (663)
.|..+++.+++|+.|-+.+.+|+|=-++
T Consensus 75 ligysp~~my~vVS~V~~Y~~FVPwC~k 102 (227)
T KOG3177|consen 75 LIGYSPSEMYSVVSNVSEYHEFVPWCKK 102 (227)
T ss_pred hhCCCHHHHHHHHHhHHHhhccccceec
Confidence 4789999999999999999999998776
No 159
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=39.29 E-value=16 Score=34.22 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=19.3
Q ss_pred EccCHHHHHHHhhCchhhhhc
Q 006041 102 VNADVDSVWNALTDYERLADF 122 (663)
Q Consensus 102 i~ap~e~VW~vLTDYe~la~f 122 (663)
++||++.||+++||=+.+.++
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w 21 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRL 21 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHH
Confidence 479999999999999999987
No 160
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=38.60 E-value=1.9e+02 Score=27.01 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=32.0
Q ss_pred CCCeEEEEEEecCCceeEEEEEEEEcCCCeEEEEEEEEEEec
Q 006041 347 HEQEISFEQVEGDFDSFQGKWLFEQLGSHHTLLKYSVESKMQ 388 (663)
Q Consensus 347 pprrIsfr~VeGdFr~f~G~WtLeplgdGgTrVtYtve~eP~ 388 (663)
+++...+... .+...+.-+|.++++++|.|+|+|+-++.+.
T Consensus 63 ~~~~Y~~~~~-s~~~~~~i~Y~i~~~~~~~~~v~y~E~~~~~ 103 (120)
T PF11687_consen 63 PNKRYAATFS-SSRGTFTISYEIEPLDDGSIEVTYEEEYESK 103 (120)
T ss_pred CCCEEEEEEE-ecCCCEEEEEEEEECCCCcEEEEEEEEEccC
Confidence 5666666543 3444678899999999999999999999863
No 161
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=37.74 E-value=44 Score=29.10 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHHhcCHHHHHHH
Q 006041 553 ENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGLHEVSRL 603 (663)
Q Consensus 553 ~~l~~el~~f~~~~g~~~~~mPt~~~l~~agR~Dl~~Al~~~GG~~~va~~ 603 (663)
++--+.|.+|+++.|.+...-|.. .=....=|.|.++|..+||+.+|.+.
T Consensus 8 ~~F~~~L~~f~~~~g~~~~~~P~i-~g~~vDL~~Ly~~V~~~GG~~~V~~~ 57 (92)
T PF01388_consen 8 EQFLEQLREFHESRGTPIDRPPVI-GGKPVDLYKLYKAVMKRGGFDKVTKN 57 (92)
T ss_dssp HHHHHHHHHHHHHTTSSSSS-SEE-TTSE-SHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCcC-CCEeCcHHHHHHHHHhCcCcccCccc
Confidence 344567889999999886666652 22223348999999999999876544
No 162
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=37.72 E-value=43 Score=25.51 Aligned_cols=31 Identities=32% Similarity=0.495 Sum_probs=23.3
Q ss_pred HHHhchHHHHHHHHHhc-CHHHHHHHhccccc
Q 006041 579 FERAGRYDIARALEKWG-GLHEVSRLLSLKLR 609 (663)
Q Consensus 579 l~~agR~Dl~~Al~~~G-G~~~va~~lg~~~~ 609 (663)
+++.-+.=|..||+++| -...+|+.||+.-+
T Consensus 2 l~~~E~~~i~~aL~~~~gn~~~aA~~Lgisr~ 33 (42)
T PF02954_consen 2 LEEFEKQLIRQALERCGGNVSKAARLLGISRR 33 (42)
T ss_dssp HHHHHHHHHHHHHHHTTT-HHHHHHHHTS-HH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHCCCHH
Confidence 55666778999999977 57789999998643
No 163
>PRK03601 transcriptional regulator HdfR; Provisional
Probab=37.11 E-value=21 Score=36.62 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.5
Q ss_pred cHHHHHHHhcCHHHHHHHcCchh
Q 006041 516 DVEKAITRMGGFRRMASLMNLAL 538 (663)
Q Consensus 516 dl~~aI~~~GG~~~vA~~lg~~~ 538 (663)
-...+|.++|.|.++|++||++.
T Consensus 7 ~~f~~v~~~gs~s~AA~~L~isq 29 (275)
T PRK03601 7 KTFLEVSRTRHFGRAAESLYLTQ 29 (275)
T ss_pred HHHHHHHHcCCHHHHHHHhCCCh
Confidence 45779999999999999999993
No 164
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=37.04 E-value=29 Score=30.58 Aligned_cols=62 Identities=15% Similarity=0.251 Sum_probs=36.7
Q ss_pred HHHHHHHcCchhhhcccC-CCCccCChHHHHHHHHHHHHHhCCCCCCCC----CHHHHHHhchHHHHHHHH
Q 006041 527 FRRMASLMNLALAYKHRK-PKGYWDNLENLEEEISRFQRSWGMDPSFMP----SRKSFERAGRYDIARALE 592 (663)
Q Consensus 527 ~~~vA~~lg~~~a~~~r~-p~gyw~~~~~l~~el~~f~~~~g~~~~~mP----t~~~l~~agR~Dl~~Al~ 592 (663)
|..+|.+||++-+- -.. .. +|.+++++......+.|-...+.== -...|...||.||++.++
T Consensus 18 Wk~LAr~Lg~se~d-I~~i~~---~~~~~~~eq~~~mL~~W~~r~g~~At~~~L~~aL~~i~r~Div~~~~ 84 (84)
T cd08804 18 WTELARELDFTEEQ-IHQIRI---ENPNSLQDQSHALLKYWLERDGKHATDTNLMKCLTKINRMDIVHLME 84 (84)
T ss_pred HHHHHHHcCCCHHH-HHHHHH---HCcccHHHHHHHHHHHHHHccCCCchHHHHHHHHHHcChHHHHHHhC
Confidence 88999999998531 111 11 1234456666666666633211111 234568999999998763
No 165
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=35.10 E-value=85 Score=36.48 Aligned_cols=173 Identities=13% Similarity=0.239 Sum_probs=97.4
Q ss_pred CCCceeecccccCCCCcccceEEEEeeccccccCCeeE-EEEEEEE-EcCCHHHHHHHHhccCcccccCcCCcEEEEEee
Q 006041 238 NSKWGVFGQVCRLDRPCFVDEVHLRRFDGLLENGGVHR-CVVASIT-VKAPVSEVWNVMTAYETLPEIVPNLAISKILSR 315 (663)
Q Consensus 238 ~~~W~~~~~~~gi~~~~~~deV~lRr~D~~~e~~g~~r-~VrasIv-I~APpeqVWaVLTDyEnyPeWiP~V~sSrVLer 315 (663)
+.+|+++-.+--+ .+|.|.+. .+|.-. -..+.=. .-.+.-+|-...-|.+---+|-..+..+.|++.
T Consensus 402 d~nwqlFaeegem-------kmy~re~e----eng~~~Dplka~hav~gvta~e~chyf~~~~~rndwettle~~~vve~ 470 (611)
T KOG1739|consen 402 DANWQLFAEEGEM-------KMYRREVE----ENGIVLDPLKATHAVKGVTAHEVCHYFWNVDVRNDWETTLENFHVVET 470 (611)
T ss_pred cchhhhhcccCCc-------cccceeec----cCCcccCccccchhhcchhHHHHHHHHcChhhhcchhhhhhhceeeee
Confidence 4469999888777 77777433 122211 1122111 224566677777777777788888888888765
Q ss_pred -cCCEEEEEEEec-------cceeEEEEEEEEEEEEeeeCC-------CeEEEEEEe-cCCceeEEEE-------EEE--
Q 006041 316 -ENNKVRILQEGC-------KGLLYMVLHARVVMDICEQHE-------QEISFEQVE-GDFDSFQGKW-------LFE-- 370 (663)
Q Consensus 316 -~gn~vrv~q~g~-------~gll~~~~~~rvVLDV~E~pp-------rrIsfr~Ve-GdFr~f~G~W-------tLe-- 370 (663)
.++.+.++|+.. ...+|+. +.+-+-+..+..+ ..+.+..++ |. +-.+..- ++.
T Consensus 471 is~d~~~~~qthkrvwpasqrd~lf~s-hirki~~~~e~gad~wivcn~s~~~a~~pl~n-~cvr~~ltv~micqt~v~~ 548 (611)
T KOG1739|consen 471 ISDDAIIIYQTHKRVWPASQRDVLFLS-HIRKIPALTENGADTWIVCNFSVDHASAPLNN-RCVRAKLTVAMICQTLVSP 548 (611)
T ss_pred ecCCeEEEEecccccCCCCcchhHHHH-HHhhcccccCCCCceEEEecCccccccCccCC-ceEEEeeeeeeeeecccCC
Confidence 556666665311 1111110 1111111222111 111111111 11 1111111 111
Q ss_pred -----Ec--CCCeEEEEEEEEEEeccCccchHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCC
Q 006041 371 -----QL--GSHHTLLKYSVESKMQKNSLLSEAIMEEVIYEDLPSNLCAIRDYVEKREGDNS 425 (663)
Q Consensus 371 -----pl--gdGgTrVtYtve~eP~~gg~LP~~L~er~vre~L~~~L~ALR~RAEkr~a~~~ 425 (663)
++ ++-.|.++|-..+.| |||.|...+....++.++..|+.|-.++.....++.
T Consensus 549 p~~~q~l~rdd~~ckityvs~vnp--ggwapasalravykreypkflkrft~yv~~~~kgkp 608 (611)
T KOG1739|consen 549 PEGNQELSRDDILCKITYVSNVNP--GGWAPASALRAVYKREYPKFLKRFTSYVQEKTKGKP 608 (611)
T ss_pred cccCCcccccceeEEEEEEeeeCC--CCcccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 11 233799999999998 599999999999999999999999999988777655
No 166
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=34.62 E-value=85 Score=29.68 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCHHHHHhcCcccHHHHHHHhcCHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHH
Q 006041 482 NIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISR 561 (663)
Q Consensus 482 ~~~~L~~eL~~f~~~~G~~g~mP~~~~Lr~~gr~dl~~aI~~~GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~ 561 (663)
.+..|..|-+.|+..| |...|-..+||+.||.+ | -+++.=|.+
T Consensus 30 ~~~~L~~E~~~Fi~~F-----------------------i~~rGnlKe~e~~lgiS--Y------------PTvR~rLd~ 72 (113)
T PF09862_consen 30 WFARLSPEQLEFIKLF-----------------------IKNRGNLKEMEKELGIS--Y------------PTVRNRLDK 72 (113)
T ss_pred hhhcCCHHHHHHHHHH-----------------------HHhcCCHHHHHHHHCCC--c------------HHHHHHHHH
Confidence 4667777778887776 67789999999999999 6 578888888
Q ss_pred HHHHhCCCCCCCCCHHHHHHhchHHHHHHHHH
Q 006041 562 FQRSWGMDPSFMPSRKSFERAGRYDIARALEK 593 (663)
Q Consensus 562 f~~~~g~~~~~mPt~~~l~~agR~Dl~~Al~~ 593 (663)
.++..|. .|....-....|.+|..+|+.
T Consensus 73 ii~~lg~----~~~~~~~~~~~~~~IL~~L~~ 100 (113)
T PF09862_consen 73 IIEKLGY----EEDEEEEEEDERKEILDKLEK 100 (113)
T ss_pred HHHHhCC----CCCcccccchhHHHHHHHHHc
Confidence 9999887 444444555667788877773
No 167
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=34.50 E-value=43 Score=29.61 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=40.0
Q ss_pred CHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHHHHHHhCCCCCCCCC-----HHHHHHhchHHHHHHHH
Q 006041 526 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPS-----RKSFERAGRYDIARALE 592 (663)
Q Consensus 526 G~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~f~~~~g~~~~~mPt-----~~~l~~agR~Dl~~Al~ 592 (663)
-|..+|..||++-+-=.+-...| -.+|++.+.+....|-...+..|. .+.|.++||.||+.-|+
T Consensus 15 ~Wk~lar~LGlse~~Id~Ie~~~---~~dl~eq~~~mL~~W~~~~~~~~atv~~L~~AL~~~gr~dlae~l~ 83 (86)
T cd08779 15 DWQAIGLHLGLSYRELQRIKYNN---RDDLDEQIFDMLFSWAQRQAGDPDAVGKLVTALEESGRQDLADEVR 83 (86)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHC---ccCHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHcCHHHHHHHHH
Confidence 37888999999854222222333 245677777777777432222222 35788899999998876
No 168
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=34.35 E-value=77 Score=28.06 Aligned_cols=41 Identities=12% Similarity=0.293 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHhCCCCCCCCCHHHHHHhchHHHHHHHHHhcCH
Q 006041 552 LENLEEEISRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGL 597 (663)
Q Consensus 552 ~~~l~~el~~f~~~~g~~~~~mPt~~~l~~agR~Dl~~Al~~~GG~ 597 (663)
.++...-+.+|++.+| +||.++|.+++-+||..+|..+|=.
T Consensus 11 ~~~a~~~~~~l~~~~g-----~pt~~~l~~~~~~el~~~i~~~G~~ 51 (108)
T PF00730_consen 11 IKAARKIYRRLFERYG-----FPTPEALAEASEEELRELIRPLGFS 51 (108)
T ss_dssp HHHHHHHHHHHHHHHS-----CSSHHHHHCSHHHHHHHHHTTSTSH
T ss_pred HHHHHHHHHHHHHHhc-----CCCHHHHHhCCHHHHHHHhhccCCC
Confidence 4566667788999998 8999999999999999999986654
No 169
>PRK10236 hypothetical protein; Provisional
Probab=32.99 E-value=2.8e+02 Score=29.49 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=45.8
Q ss_pred CCchhhhHHHHHHHHHHHHHHhCCCCCCCCHHHHHhcCcccHHHHHHHhcCHHHHHHHcCchhhhcccCCCCccCChHHH
Q 006041 476 VPGLQTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENL 555 (663)
Q Consensus 476 ~~g~~~~~~~L~~eL~~f~~~~G~~g~mP~~~~Lr~~gr~dl~~aI~~~GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l 555 (663)
.|.|.+-|+.+..||+.| |.+++| .-|| |+.-.++.|- ..|+++|+.+ | +.-|+ ...+
T Consensus 56 ~~~~~~yw~~Ia~elq~f----Ggnt~~---n~lR--G~Gv~YreIL-----~DVc~~LKV~--y-----~~~~s-t~~i 113 (237)
T PRK10236 56 PEQHRRNWQLIAGELQHF----GGDSIA---NKLR--GHGKLYRAIL-----LDVSKRLKLK--A-----DKEMS-TFEI 113 (237)
T ss_pred chhHHHHHHHHHHHHHHh----cchHHH---HHHh--cCCccHHHHH-----HHHHHHcCCC--C-----CCCCC-HHHH
Confidence 577888999999999996 988866 3445 5555777774 5799999888 4 23333 6677
Q ss_pred HHHHHH
Q 006041 556 EEEISR 561 (663)
Q Consensus 556 ~~el~~ 561 (663)
|.||..
T Consensus 114 E~~il~ 119 (237)
T PRK10236 114 EQQLLE 119 (237)
T ss_pred HHHHHH
Confidence 777655
No 170
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=32.08 E-value=85 Score=30.42 Aligned_cols=46 Identities=15% Similarity=0.382 Sum_probs=29.9
Q ss_pred ceEEEEEEEccCHHHHHHHhhC-chhhhhcccccee-----c----CCceEEEEEE
Q 006041 94 RRIKAEMLVNADVDSVWNALTD-YERLADFVPNLAC-----R----SSTTTLSYEV 139 (663)
Q Consensus 94 rrV~a~i~i~ap~e~VW~vLTD-Ye~la~fiP~l~~-----~----~~gT~LtY~v 139 (663)
-.+..++.+++|++.+|+++.+ =..|+..+|++.. + .+||...+..
T Consensus 4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f 59 (151)
T PF00407_consen 4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTF 59 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEE
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEe
Confidence 3578899999999999999996 2234555555555 2 3557655544
No 171
>PRK10837 putative DNA-binding transcriptional regulator; Provisional
Probab=31.33 E-value=35 Score=34.76 Aligned_cols=21 Identities=14% Similarity=0.289 Sum_probs=19.4
Q ss_pred HHHHHHHhcCHHHHHHHcCch
Q 006041 517 VEKAITRMGGFRRMASLMNLA 537 (663)
Q Consensus 517 l~~aI~~~GG~~~vA~~lg~~ 537 (663)
...+|.++|+|.++|++||++
T Consensus 10 ~f~~v~e~~s~t~AA~~L~is 30 (290)
T PRK10837 10 VFAEVLKSGSTTQASVMLALS 30 (290)
T ss_pred HHHHHHHcCCHHHHHHHhCCC
Confidence 467999999999999999998
No 172
>PRK09986 DNA-binding transcriptional activator XapR; Provisional
Probab=30.63 E-value=37 Score=34.62 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=28.4
Q ss_pred cccHHHHHHHhcCHHHHHHHcCchhhhcccCCCCccCChHHHHHHHH
Q 006041 514 RVDVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEIS 560 (663)
Q Consensus 514 r~dl~~aI~~~GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~ 560 (663)
...+..+|.++|.|.++|++||.+ +..-...+.+||+||.
T Consensus 11 ~l~~f~~v~~~gs~t~AA~~L~it-------q~avS~~i~~LE~~lg 50 (294)
T PRK09986 11 LLRYFLAVAEELHFGRAAARLNIS-------QPPLSIHIKELEDQLG 50 (294)
T ss_pred HHHHHHHHHHhcCHHHHHHHhCCC-------CCHHHHHHHHHHHHhC
Confidence 344567999999999999999998 3444444555555543
No 173
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=29.79 E-value=50 Score=25.52 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=17.3
Q ss_pred cHHHHHHHhc-C-HHHHHHHcC
Q 006041 516 DVEKAITRMG-G-FRRMASLMN 535 (663)
Q Consensus 516 dl~~aI~~~G-G-~~~vA~~lg 535 (663)
-|.+||..|| + |.+||+.|+
T Consensus 11 ~l~~~v~~~g~~~W~~Ia~~~~ 32 (48)
T PF00249_consen 11 KLLEAVKKYGKDNWKKIAKRMP 32 (48)
T ss_dssp HHHHHHHHSTTTHHHHHHHHHS
T ss_pred HHHHHHHHhCCcHHHHHHHHcC
Confidence 3678999998 7 999999998
No 174
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=29.32 E-value=1.2e+02 Score=27.04 Aligned_cols=47 Identities=13% Similarity=0.221 Sum_probs=34.0
Q ss_pred cCHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHHHHH------HhCCCCCCCCCHHHHHHhchH
Q 006041 525 GGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQR------SWGMDPSFMPSRKSFERAGRY 585 (663)
Q Consensus 525 GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~f~~------~~g~~~~~mPt~~~l~~agR~ 585 (663)
=|.+++|++||++. .+.+.||..+-+ ..|-.-+++||.+-++--+|.
T Consensus 24 VgSk~ia~~l~~s~--------------aTIRN~M~~Le~lGlve~~p~~s~GriPT~~aYr~~~~~ 76 (78)
T PF03444_consen 24 VGSKTIAEELGRSP--------------ATIRNEMADLEELGLVESQPHPSGGRIPTDKAYRALNRQ 76 (78)
T ss_pred cCHHHHHHHHCCCh--------------HHHHHHHHHHHHCCCccCCCCCCCCCCcCHHHHHHHccc
Confidence 38899999998884 567777766433 234456999999988766653
No 175
>PRK11242 DNA-binding transcriptional regulator CynR; Provisional
Probab=28.15 E-value=39 Score=34.49 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=19.3
Q ss_pred HHHHHHHhcCHHHHHHHcCch
Q 006041 517 VEKAITRMGGFRRMASLMNLA 537 (663)
Q Consensus 517 l~~aI~~~GG~~~vA~~lg~~ 537 (663)
+..+|..+|.+.++|++||++
T Consensus 8 ~f~~v~~~gs~s~AA~~L~is 28 (296)
T PRK11242 8 YFLAVAEHGNFTRAAEALHVS 28 (296)
T ss_pred HHHHHHHhCCHHHHHHHcCCC
Confidence 467899999999999999999
No 176
>TIGR03339 phn_lysR aminoethylphosphonate catabolism associated LysR family transcriptional regulator. This group of sequences represents a number of related clades with numerous examples of members adjacent to operons for the degradation of 2-aminoethylphosphonate (AEP) in Pseudomonas, Ralstonia, Bordetella and Burkholderia species. These are transcriptional regulators of the LysR family which contain a helix-turn-helix (HTH) domain (pfam00126) and a periplasmic substrate-binding protein-like domain (pfam03466).
Probab=27.36 E-value=42 Score=33.76 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.4
Q ss_pred HHHHHHHhcCHHHHHHHcCch
Q 006041 517 VEKAITRMGGFRRMASLMNLA 537 (663)
Q Consensus 517 l~~aI~~~GG~~~vA~~lg~~ 537 (663)
...||..+|.|.++|++||.+
T Consensus 4 ~f~~v~~~gs~~~AA~~L~is 24 (279)
T TIGR03339 4 AFHAVARCGSFTRAAERLGLS 24 (279)
T ss_pred hhHHHHhcCCHHHHHHHhcCC
Confidence 467999999999999999998
No 177
>PRK01905 DNA-binding protein Fis; Provisional
Probab=27.08 E-value=2e+02 Score=24.84 Aligned_cols=34 Identities=12% Similarity=0.136 Sum_probs=26.3
Q ss_pred HHHHHHhchHHHHHHHHHhcC-HHHHHHHhccccc
Q 006041 576 RKSFERAGRYDIARALEKWGG-LHEVSRLLSLKLR 609 (663)
Q Consensus 576 ~~~l~~agR~Dl~~Al~~~GG-~~~va~~lg~~~~ 609 (663)
...+.+..+.=|.++++.+|| ...+|++||+.-+
T Consensus 31 ~~~l~~~E~~~i~~aL~~~~gn~s~aAr~LGIsrs 65 (77)
T PRK01905 31 DMVLSCVEKPLLEVVMEQAGGNQSLAAEYLGINRN 65 (77)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCCCHH
Confidence 344555666678999999887 8899999998643
No 178
>PRK09791 putative DNA-binding transcriptional regulator; Provisional
Probab=26.06 E-value=43 Score=34.63 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.8
Q ss_pred HHHHHHHhcCHHHHHHHcCchh
Q 006041 517 VEKAITRMGGFRRMASLMNLAL 538 (663)
Q Consensus 517 l~~aI~~~GG~~~vA~~lg~~~ 538 (663)
+..+|.++|+|.++|++||.+.
T Consensus 12 ~f~~v~~~gs~s~AA~~L~isQ 33 (302)
T PRK09791 12 AFVEVARQGSIRGASRMLNMSQ 33 (302)
T ss_pred HHHHHHHcCCHHHHHHHhCCCh
Confidence 5779999999999999999884
No 179
>PRK11139 DNA-binding transcriptional activator GcvA; Provisional
Probab=26.01 E-value=40 Score=34.73 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=19.7
Q ss_pred HHHHHHHhcCHHHHHHHcCch
Q 006041 517 VEKAITRMGGFRRMASLMNLA 537 (663)
Q Consensus 517 l~~aI~~~GG~~~vA~~lg~~ 537 (663)
...+|.++|+|.++|++||++
T Consensus 13 ~f~~v~~~gs~s~AA~~L~is 33 (297)
T PRK11139 13 AFEAAARHLSFTRAAEELFVT 33 (297)
T ss_pred HHHHHHHhCCHHHHHHHhCCC
Confidence 577999999999999999999
No 180
>TIGR02424 TF_pcaQ pca operon transcription factor PcaQ. Members of this family are LysR-family transcription factors associated with operons for catabolism of protocatechuate. Members occur only in Proteobacteria.
Probab=25.04 E-value=46 Score=34.21 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.5
Q ss_pred HHHHHHHhcCHHHHHHHcCchh
Q 006041 517 VEKAITRMGGFRRMASLMNLAL 538 (663)
Q Consensus 517 l~~aI~~~GG~~~vA~~lg~~~ 538 (663)
...+|.++|.|.++|++||.+.
T Consensus 10 ~f~~v~~~gS~s~AA~~L~isq 31 (300)
T TIGR02424 10 CFVEVARQGSVKRAAEALHITQ 31 (300)
T ss_pred HHHHHHHhCCHHHHHHHhCCCh
Confidence 4679999999999999999983
No 181
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=24.75 E-value=49 Score=27.68 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=32.2
Q ss_pred hcCHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHHHHHHhCCCCCCCCC----HHHHHHhchHHHHHHHHH
Q 006041 524 MGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPS----RKSFERAGRYDIARALEK 593 (663)
Q Consensus 524 ~GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~f~~~~g~~~~~mPt----~~~l~~agR~Dl~~Al~~ 593 (663)
--.|+.+|..||++...=..-...|-. +.+-..+....|....+--.| ..-|+++||.|++..|+.
T Consensus 12 ~~~Wk~La~~Lg~~~~~i~~i~~~~~~----~~~~~~~~L~~W~~~~~~~at~~~L~~aL~~~~~~d~~~~i~~ 81 (83)
T PF00531_consen 12 GSDWKRLARKLGLSESEIENIEEENPD----LREQTYEMLQRWRQREGPNATVDQLIQALRDIGRNDLAEKIEQ 81 (83)
T ss_dssp STCHHHHHHHTTS-HHHHHHHHHHSTS----HHHHHHHHHHHHHHHHGSTSSHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhhHHHHHHHhCcCHHHHHHHHHhCCC----hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHCCcHHHHHHHHh
Confidence 456999999999974320000111111 112222333333211112234 445677788888887764
No 182
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=24.68 E-value=52 Score=34.17 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.9
Q ss_pred HHHHHHHhcCHHHHHHHcCchh
Q 006041 517 VEKAITRMGGFRRMASLMNLAL 538 (663)
Q Consensus 517 l~~aI~~~GG~~~vA~~lg~~~ 538 (663)
...+|.++|.|.++|++||.+.
T Consensus 12 ~f~~v~e~gs~s~AA~~L~isq 33 (305)
T CHL00180 12 ILKAIATEGSFKKAAESLYISQ 33 (305)
T ss_pred HHHHHHHcCCHHHHHHHhcCCC
Confidence 5679999999999999999993
No 183
>PRK13348 chromosome replication initiation inhibitor protein; Provisional
Probab=24.60 E-value=51 Score=33.86 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.0
Q ss_pred cHHHHHHHhcCHHHHHHHcCch
Q 006041 516 DVEKAITRMGGFRRMASLMNLA 537 (663)
Q Consensus 516 dl~~aI~~~GG~~~vA~~lg~~ 537 (663)
-...+|.++|+|.++|++||.+
T Consensus 8 ~~f~~v~~~gs~t~AA~~L~iS 29 (294)
T PRK13348 8 EALAAVVETGSFERAARRLHVT 29 (294)
T ss_pred HHHHHHHHcCCHHHHHHHhCCC
Confidence 4577999999999999999998
No 184
>PF14549 P22_Cro: DNA-binding transcriptional regulator Cro; PDB: 1RZS_A 3BD1_A 3QWS_A 2HIN_B.
Probab=24.59 E-value=64 Score=27.07 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.2
Q ss_pred HHHHHHhcCHHHHHHHcCchh
Q 006041 518 EKAITRMGGFRRMASLMNLAL 538 (663)
Q Consensus 518 ~~aI~~~GG~~~vA~~lg~~~ 538 (663)
.+||...||..++|+.||.+.
T Consensus 3 ~~aI~~~G~~~~lAkalGVs~ 23 (60)
T PF14549_consen 3 KDAIKYFGGQSKLAKALGVSP 23 (60)
T ss_dssp HHHHHHHSSHHHHHHHHTS-H
T ss_pred HHHHHHHCCHHHHHHHHCCCH
Confidence 468999999999999999984
No 185
>PRK00430 fis global DNA-binding transcriptional dual regulator Fis; Provisional
Probab=23.76 E-value=1.5e+02 Score=26.89 Aligned_cols=55 Identities=7% Similarity=0.124 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHh-CCCCCCCCCHHHHHHhchHHHHHHHHHhcC-HHHHHHHhcccc
Q 006041 553 ENLEEEISRFQRSW-GMDPSFMPSRKSFERAGRYDIARALEKWGG-LHEVSRLLSLKL 608 (663)
Q Consensus 553 ~~l~~el~~f~~~~-g~~~~~mPt~~~l~~agR~Dl~~Al~~~GG-~~~va~~lg~~~ 608 (663)
+.++..|.+|..+. |.+|.-+-. ..+.+.-|.=|..|++++|| ...+|+.||+.-
T Consensus 26 ~~~~~~l~~~~~~l~~~~~~~~~~-~~l~~~Er~~i~~aL~~~~gn~s~AAr~LGIsR 82 (95)
T PRK00430 26 DSVKQALKNYFAQLNGQDVNDLYE-LVLAEVEAPLLDMVMQYTRGNQTRAALMLGINR 82 (95)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCH
Confidence 45666677666655 444322211 12333445558899999877 899999999854
No 186
>PRK11482 putative DNA-binding transcriptional regulator; Provisional
Probab=22.42 E-value=2e+02 Score=30.47 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=34.8
Q ss_pred cHHHHHHHhcCHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHHHHHHhCCC------CCCCCCH
Q 006041 516 DVEKAITRMGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMD------PSFMPSR 576 (663)
Q Consensus 516 dl~~aI~~~GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~f~~~~g~~------~~~mPt~ 576 (663)
....||..+|.|.++|++||++. -.+-..|+++=++.|.+ -++.||.
T Consensus 35 ~~f~av~e~gs~s~AA~~L~isQ--------------pavS~~I~~LE~~lG~~LF~R~~r~v~lT~ 87 (317)
T PRK11482 35 TIFEAVYVHKGIVNAAKILNLTP--------------SAISQSIQKLRVIFPDPLFIRKGQGVTPTA 87 (317)
T ss_pred HHHHHHHHcCCHHHHHHHhCCCh--------------HHHHHHHHHHHHHhCCcceEecCCCccCCH
Confidence 34669999999999999999995 35666666666666644 2667775
No 187
>PF14549 P22_Cro: DNA-binding transcriptional regulator Cro; PDB: 1RZS_A 3BD1_A 3QWS_A 2HIN_B.
Probab=21.58 E-value=80 Score=26.49 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=17.9
Q ss_pred HHHHHhcCHHHHHHHhccccc
Q 006041 589 RALEKWGGLHEVSRLLSLKLR 609 (663)
Q Consensus 589 ~Al~~~GG~~~va~~lg~~~~ 609 (663)
.||..+||..++|+.||....
T Consensus 4 ~aI~~~G~~~~lAkalGVs~~ 24 (60)
T PF14549_consen 4 DAIKYFGGQSKLAKALGVSPQ 24 (60)
T ss_dssp HHHHHHSSHHHHHHHHTS-HH
T ss_pred HHHHHHCCHHHHHHHHCCCHH
Confidence 589999999999999998654
No 188
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases
Probab=21.15 E-value=1.8e+02 Score=27.52 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHHHHHhCCCCCCCCHHHHHhcCcccHHHHHHHhcCHHHHHHHc
Q 006041 480 QTNIEVLKAELLEFISKHGQEGFMPMRKQLRKHGRVDVEKAITRMGGFRRMASLM 534 (663)
Q Consensus 480 ~~~~~~L~~eL~~f~~~~G~~g~mP~~~~Lr~~gr~dl~~aI~~~GG~~~vA~~l 534 (663)
|-.+++-..-..+|++.+| |+..+|.++.-.+|.+.+...| +..=|+.+
T Consensus 12 ~~s~~~a~~~~~~l~~~~g-----pt~~~l~~~~~~~l~~~~~~~G-~~~kA~~i 60 (158)
T cd00056 12 QTTDKAVNKAYERLFERYG-----PTPEALAAADEEELRELIRSLG-YRRKAKYL 60 (158)
T ss_pred cccHHHHHHHHHHHHHHhC-----CCHHHHHCCCHHHHHHHHHhcC-hHHHHHHH
Confidence 3455666777888888887 9999999999999999999988 55544444
No 189
>PF01955 CbiZ: Adenosylcobinamide amidohydrolase; InterPro: IPR002808 This prokaryotic protein includes CbiZ, which is involved in the salvage pathway of cobinamide in archaea. Archaea convert adenosylcobinamide (AdoCbi) into adenosylcobinamide phosphate (AdoCbi-P) in two steps. First, the amidohydrolase activity of CbiZ cleaves off the aminopropanol moiety of AdoCbi yielding adenosylcobyric acid (AdoCby); second, AdoCby is converted into AdoCbi-P by the action of adenosylcobinamide-phosphate synthase (CbiB, 6.3.1.10 from EC). Adenosylcobyric acid is an intermediate of the de novo coenzyme B12 biosynthetic route [].
Probab=20.87 E-value=37 Score=34.35 Aligned_cols=48 Identities=29% Similarity=0.507 Sum_probs=35.2
Q ss_pred hcCHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHHHHHHhCCCC---CCCCCHHHH
Q 006041 524 MGGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDP---SFMPSRKSF 579 (663)
Q Consensus 524 ~GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~f~~~~g~~~---~~mPt~~~l 579 (663)
.|||+.+-.-+|... |++||.. +.+++|.++++++|++| ..|=|..++
T Consensus 17 ~GG~~~~~~v~N~~V------~~~~~~~--~p~~~l~~~~~~~gl~~~~~~gl~TAa~~ 67 (191)
T PF01955_consen 17 NGGLREVRTVVNHQV------PKDYDCD--DPEEYLRRVLRELGLDPEDTVGLMTAADM 67 (191)
T ss_pred CCceeeeeEEEEEEc------CCCCCCC--CHHHHHHHHHHHhccccccceeEEeeecc
Confidence 588888665665553 7799995 99999999999999865 334444444
No 190
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=20.72 E-value=1.4e+02 Score=26.63 Aligned_cols=66 Identities=15% Similarity=0.248 Sum_probs=35.8
Q ss_pred CHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHHHHHHhCCCCCCC-C----CHHHHHHhchHHHHHHHHH
Q 006041 526 GFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFM-P----SRKSFERAGRYDIARALEK 593 (663)
Q Consensus 526 G~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~f~~~~g~~~~~m-P----t~~~l~~agR~Dl~~Al~~ 593 (663)
.|..+|.+||++-.-=.+-...|= -+++++-..+....|-...+.- = -...|.++||.||+..|.+
T Consensus 15 ~Wk~lar~LG~s~~eI~~ie~~~~--r~~~~eq~~~mL~~W~~r~g~~~ATv~~L~~aL~~~~r~di~~~l~~ 85 (86)
T cd08777 15 KWKRCARKLGFTESEIEEIDHDYE--RDGLKEKVHQMLHKWKMKEGSKGATVGKLAQALEGCIKPDLLVSLIQ 85 (86)
T ss_pred HHHHHHHHcCCCHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHcchhhHHHHHHh
Confidence 589999999998321001111110 0224444555555663321100 1 2466888999999988753
No 191
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=20.04 E-value=82 Score=26.87 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=36.8
Q ss_pred cCHHHHHHHcCchhhhcccCCCCccCChHHHHHHHHHHHHHhCCCCCCCCCH----HHHHHhchHHHHHHHHH
Q 006041 525 GGFRRMASLMNLALAYKHRKPKGYWDNLENLEEEISRFQRSWGMDPSFMPSR----KSFERAGRYDIARALEK 593 (663)
Q Consensus 525 GG~~~vA~~lg~~~a~~~r~p~gyw~~~~~l~~el~~f~~~~g~~~~~mPt~----~~l~~agR~Dl~~Al~~ 593 (663)
..|+.+|++||++-..=......+ -.++.+-..+..+.|....+.-.|. ..|++.||.|++..|+.
T Consensus 18 ~~W~~la~~Lg~~~~~i~~i~~~~---~~~~~~~~~~lL~~W~~~~g~~at~~~L~~aL~~~~~~d~a~~i~~ 87 (88)
T smart00005 18 LDWRELARKLGLSEADIDQIRTEA---PRDLAEQSVQLLRLWEQREGKNATLGTLLEALRKMGRDDAVELLRS 87 (88)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHC---CCCHHHHHHHHHHHHHHccchhhHHHHHHHHHHHcChHHHHHHHhc
Confidence 568999999999622100000000 0245556666666774432223343 44567888888887763
Done!