Query 006042
Match_columns 663
No_of_seqs 340 out of 2044
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 17:31:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006042.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006042hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03012 Camelliol C synthase 100.0 6E-165 1E-169 1384.5 59.0 660 1-662 99-759 (759)
2 PLN02993 lupeol synthase 100.0 4E-162 8E-167 1365.0 58.4 657 1-659 99-756 (763)
3 TIGR03463 osq_cycl 2,3-oxidosq 100.0 8E-140 2E-144 1190.4 55.5 630 6-655 2-634 (634)
4 KOG0497 Oxidosqualene-lanoster 100.0 2E-140 4E-145 1131.9 40.6 658 1-660 99-756 (760)
5 TIGR01507 hopene_cyclase squal 100.0 1E-129 2E-134 1106.8 54.6 606 1-658 18-632 (635)
6 cd02892 SQCY_1 Squalene cyclas 100.0 3E-129 8E-134 1113.9 54.6 632 1-655 1-634 (634)
7 TIGR01787 squalene_cyclas squa 100.0 2E-128 4E-133 1096.9 55.7 616 1-657 2-621 (621)
8 COG1657 SqhC Squalene cyclase 100.0 1.4E-60 2.9E-65 513.2 16.6 510 88-659 1-514 (517)
9 cd02889 SQCY Squalene cyclase 100.0 2.6E-44 5.7E-49 386.6 32.4 347 294-655 2-348 (348)
10 PLN03012 Camelliol C synthase 100.0 1.1E-41 2.3E-46 385.2 23.9 524 49-656 97-694 (759)
11 PLN02993 lupeol synthase 100.0 1.8E-39 3.8E-44 368.1 27.3 521 49-655 97-693 (763)
12 TIGR01507 hopene_cyclase squal 100.0 9.9E-37 2.2E-41 346.8 34.3 479 2-565 65-600 (635)
13 TIGR03463 osq_cycl 2,3-oxidosq 100.0 2.4E-37 5.2E-42 352.2 28.0 512 56-655 2-577 (634)
14 cd02892 SQCY_1 Squalene cyclas 100.0 1.3E-35 2.9E-40 340.9 29.3 514 52-655 2-577 (634)
15 TIGR01787 squalene_cyclas squa 100.0 2.1E-33 4.6E-38 319.6 30.6 502 51-655 2-561 (621)
16 KOG0497 Oxidosqualene-lanoster 100.0 1.4E-29 3E-34 274.7 8.0 522 50-657 98-694 (760)
17 cd00688 ISOPREN_C2_like This g 100.0 3.4E-26 7.3E-31 237.9 28.2 294 294-655 2-300 (300)
18 cd02896 complement_C3_C4_C5 Pr 99.9 6E-24 1.3E-28 223.1 24.8 269 318-655 21-297 (297)
19 cd02897 A2M_2 Proteins similar 99.9 3.1E-23 6.6E-28 217.7 26.3 264 317-655 20-292 (292)
20 cd02889 SQCY Squalene cyclase 99.9 4.8E-23 1E-27 221.6 21.6 222 343-626 1-261 (348)
21 cd02890 PTase Protein prenyltr 99.8 3.3E-19 7.1E-24 186.6 24.9 278 294-653 2-284 (286)
22 cd02894 GGTase-II Geranylgeran 99.8 9.3E-19 2E-23 183.0 24.6 281 293-653 3-285 (287)
23 cd02890 PTase Protein prenyltr 99.8 2.2E-19 4.8E-24 187.9 19.2 189 385-625 25-216 (286)
24 cd00688 ISOPREN_C2_like This g 99.8 2.1E-18 4.6E-23 179.2 23.8 242 289-595 50-299 (300)
25 PLN03201 RAB geranylgeranyl tr 99.8 8.5E-19 1.8E-23 184.9 20.8 223 341-637 8-231 (316)
26 cd02895 GGTase-I Geranylgerany 99.8 1.9E-17 4.1E-22 174.1 24.9 294 294-653 2-305 (307)
27 cd02894 GGTase-II Geranylgeran 99.8 9.5E-18 2.1E-22 175.4 20.7 186 387-625 30-217 (287)
28 cd02893 FTase Protein farnesyl 99.8 6E-17 1.3E-21 169.8 25.7 282 294-653 2-297 (299)
29 PLN03201 RAB geranylgeranyl tr 99.8 1.3E-16 2.8E-21 168.3 25.7 280 292-656 9-292 (316)
30 PF07678 A2M_comp: A-macroglob 99.7 3.4E-16 7.5E-21 159.9 19.2 219 382-656 22-245 (246)
31 cd02893 FTase Protein farnesyl 99.7 1.1E-15 2.3E-20 160.4 21.8 189 386-625 26-216 (299)
32 PLN02710 farnesyltranstransfer 99.7 5.1E-15 1.1E-19 159.9 24.8 235 292-596 45-281 (439)
33 cd02896 complement_C3_C4_C5 Pr 99.7 4.2E-15 9.2E-20 156.2 21.2 226 292-595 53-296 (297)
34 PLN02710 farnesyltranstransfer 99.7 4E-15 8.6E-20 160.7 21.0 210 387-656 72-282 (439)
35 PF13249 Prenyltrans_2: Prenyl 99.7 2.7E-16 5.9E-21 140.8 9.5 110 499-624 1-112 (113)
36 PF13249 Prenyltrans_2: Prenyl 99.7 1.9E-16 4.1E-21 141.8 8.0 109 421-563 1-113 (113)
37 cd02895 GGTase-I Geranylgerany 99.6 1.2E-14 2.6E-19 152.9 22.0 241 292-595 50-306 (307)
38 KOG0366 Protein geranylgeranyl 99.6 2.9E-15 6.3E-20 146.0 14.4 173 417-637 68-241 (329)
39 cd02897 A2M_2 Proteins similar 99.6 1.7E-13 3.7E-18 143.9 22.7 222 293-595 51-291 (292)
40 cd02891 A2M_like Proteins simi 99.6 3.6E-13 7.7E-18 140.5 24.1 257 318-655 21-282 (282)
41 PF13243 Prenyltrans_1: Prenyl 99.5 2.2E-15 4.7E-20 134.2 3.1 107 495-618 1-107 (109)
42 PF13243 Prenyltrans_1: Prenyl 99.5 9.6E-15 2.1E-19 130.1 1.8 105 1-113 1-105 (109)
43 COG5029 CAL1 Prenyltransferase 99.5 2.9E-13 6.2E-18 136.1 12.3 178 416-637 76-254 (342)
44 KOG0366 Protein geranylgeranyl 99.4 3.7E-12 8.1E-17 124.5 17.6 261 292-627 19-282 (329)
45 KOG0367 Protein geranylgeranyl 99.4 8.3E-12 1.8E-16 124.3 18.8 298 292-658 12-322 (347)
46 COG5029 CAL1 Prenyltransferase 99.4 1.9E-11 4.2E-16 123.1 17.3 213 317-599 101-317 (342)
47 KOG0365 Beta subunit of farnes 99.3 1.4E-10 3E-15 117.7 17.1 271 293-627 74-350 (423)
48 TIGR02474 pec_lyase pectate ly 99.3 5.9E-11 1.3E-15 121.2 14.5 154 387-558 43-222 (290)
49 KOG0365 Beta subunit of farnes 99.3 1.3E-10 2.8E-15 117.9 15.5 186 388-624 101-288 (423)
50 COG1657 SqhC Squalene cyclase 99.2 3.4E-10 7.4E-15 123.7 15.1 233 387-659 200-454 (517)
51 PF07678 A2M_comp: A-macroglob 99.1 1.8E-09 3.9E-14 110.5 16.6 219 296-595 2-243 (246)
52 cd02891 A2M_like Proteins simi 99.1 8.9E-09 1.9E-13 107.4 22.1 220 291-595 49-281 (282)
53 TIGR02474 pec_lyase pectate ly 98.8 4.8E-08 1E-12 100.1 14.7 154 467-623 44-225 (290)
54 KOG0367 Protein geranylgeranyl 98.8 3.2E-07 6.9E-12 92.0 17.7 144 417-599 176-322 (347)
55 COG1689 Uncharacterized protei 98.8 4.2E-07 9.2E-12 87.2 16.8 253 251-595 7-270 (274)
56 COG1689 Uncharacterized protei 98.6 8.4E-07 1.8E-11 85.2 13.8 227 342-631 7-255 (274)
57 PF00432 Prenyltrans: Prenyltr 98.4 4.2E-07 9E-12 66.9 4.6 42 51-92 3-44 (44)
58 KOG1366 Alpha-macroglobulin [P 98.4 3.2E-06 7E-11 103.6 13.8 259 323-661 948-1216(1436)
59 PF00432 Prenyltrans: Prenyltr 98.2 3.1E-06 6.6E-11 62.3 6.0 43 543-597 2-44 (44)
60 PF09492 Pec_lyase: Pectic aci 98.0 1.9E-05 4E-10 81.3 8.8 152 467-624 39-221 (289)
61 PF09492 Pec_lyase: Pectic aci 97.6 0.00012 2.6E-09 75.5 6.7 157 387-561 38-220 (289)
62 TIGR01577 oligosac_amyl oligos 97.6 0.0057 1.2E-07 71.1 21.3 260 322-626 299-585 (616)
63 PLN02592 ent-copalyl diphospha 97.4 0.021 4.6E-07 67.1 22.6 112 264-401 263-374 (800)
64 PF07470 Glyco_hydro_88: Glyco 97.3 0.012 2.7E-07 63.0 17.5 220 411-658 86-335 (336)
65 PF01122 Cobalamin_bind: Eukar 97.2 0.0035 7.6E-08 65.8 11.9 91 465-562 185-278 (326)
66 PLN02592 ent-copalyl diphospha 97.1 0.021 4.6E-07 67.1 18.7 250 293-615 74-342 (800)
67 PLN02279 ent-kaur-16-ene synth 96.7 0.021 4.5E-07 67.3 14.2 251 292-615 34-302 (784)
68 PF07470 Glyco_hydro_88: Glyco 96.7 0.037 8.1E-07 59.3 15.2 243 322-596 71-332 (336)
69 PLN02279 ent-kaur-16-ene synth 96.7 0.048 1E-06 64.4 16.7 112 259-401 218-329 (784)
70 cd00249 AGE AGE domain; N-acyl 96.5 0.35 7.5E-06 52.7 21.4 274 317-625 49-348 (384)
71 PF01122 Cobalamin_bind: Eukar 96.0 0.045 9.7E-07 57.6 10.4 123 469-625 148-279 (326)
72 cd00249 AGE AGE domain; N-acyl 95.5 1.7 3.6E-05 47.3 20.7 216 386-625 51-285 (384)
73 TIGR01535 glucan_glucosid gluc 95.4 2.5 5.4E-05 49.3 22.4 258 321-626 298-594 (648)
74 TIGR01577 oligosac_amyl oligos 94.8 0.92 2E-05 52.9 17.0 120 388-534 298-426 (616)
75 KOG1366 Alpha-macroglobulin [P 94.6 0.35 7.6E-06 60.6 13.4 217 295-597 975-1211(1436)
76 COG3387 SGA1 Glucoamylase and 93.8 2.1 4.5E-05 49.7 16.7 271 321-626 288-576 (612)
77 TIGR01535 glucan_glucosid gluc 93.6 2.4 5.3E-05 49.4 17.0 159 338-534 248-415 (648)
78 COG4225 Predicted unsaturated 92.5 11 0.00023 39.9 17.9 72 488-559 227-308 (357)
79 COG4225 Predicted unsaturated 90.9 8.8 0.00019 40.6 15.2 238 248-511 54-309 (357)
80 PF07944 DUF1680: Putative gly 90.8 17 0.00037 41.5 19.3 284 340-657 10-315 (520)
81 PF10022 DUF2264: Uncharacteri 83.5 72 0.0016 34.6 20.6 161 321-536 109-278 (361)
82 cd04791 LanC_SerThrkinase Lant 72.4 1E+02 0.0022 32.3 14.8 95 324-436 89-183 (321)
83 COG1331 Highly conserved prote 68.3 89 0.0019 36.4 13.6 131 323-482 413-550 (667)
84 PF07221 GlcNAc_2-epim: N-acyl 65.2 20 0.00043 38.4 7.6 95 465-564 19-127 (346)
85 COG2373 Large extracellular al 59.4 23 0.0005 45.7 7.6 66 540-616 1197-1264(1621)
86 PF07221 GlcNAc_2-epim: N-acyl 56.4 89 0.0019 33.3 10.7 97 319-435 19-123 (346)
87 COG2373 Large extracellular al 52.6 44 0.00096 43.2 8.5 98 386-508 1169-1268(1621)
88 COG1331 Highly conserved prote 51.3 4.7E+02 0.01 30.7 23.6 127 290-436 182-317 (667)
89 PF07944 DUF1680: Putative gly 47.6 59 0.0013 37.1 7.9 80 468-551 61-157 (520)
90 COG2942 N-acyl-D-glucosamine 2 43.2 1.3E+02 0.0028 32.7 9.0 109 423-554 24-150 (388)
91 PF00723 Glyco_hydro_15: Glyco 38.4 4.4E+02 0.0096 29.3 13.0 51 385-439 123-175 (448)
92 cd04791 LanC_SerThrkinase Lant 35.5 5.3E+02 0.011 26.8 14.3 81 412-513 102-183 (321)
93 KOG3760 Heparan sulfate-glucur 33.6 28 0.00061 37.4 2.2 23 542-564 380-402 (594)
94 cd04794 euk_LANCL eukaryotic L 32.3 6.4E+02 0.014 26.8 12.9 102 520-626 99-210 (343)
95 cd04794 euk_LANCL eukaryotic L 31.9 2.5E+02 0.0054 29.9 9.4 64 489-552 184-257 (343)
96 COG3387 SGA1 Glucoamylase and 29.5 39 0.00085 39.4 2.8 61 585-649 289-350 (612)
97 cd04792 LanM-like LanM-like pr 25.1 1.3E+03 0.027 27.9 19.5 102 412-535 607-713 (825)
98 PLN03009 cellulase 22.1 4.1E+02 0.0089 30.2 9.0 26 488-513 112-137 (495)
99 PRK13622 psbV cytochrome c-550 21.5 96 0.0021 30.1 3.3 36 45-80 142-178 (180)
No 1
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=5.6e-165 Score=1384.48 Aligned_cols=660 Identities=68% Similarity=1.302 Sum_probs=630.2
Q ss_pred ChHHHHHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceeh
Q 006042 1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFG 80 (663)
Q Consensus 1 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~ 80 (663)
|+|+++||+++|.+||||++|++||+|++|++||++|++|..|++++++++++++|||+++||+|||||+|++|+|+||+
T Consensus 99 ~~ra~~~~~~lQ~~dGhW~~e~~g~~fl~~~~Vi~~yi~g~~~~~~~~~~~~ei~ryl~~~Qn~DGGWglh~eg~s~~~~ 178 (759)
T PLN03012 99 LRKGIHFFSALQASDGHWPAENAGPLFFLPPLVFCLYITGHLDEIFTQDHRKEILRYIYCHQKEDGGWGLHIEGHSTMFC 178 (759)
T ss_pred HHHHHHHHHHhccCCCCcccccCCccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccCCCCeecccCCCCcchh
Confidence 57999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccc
Q 006042 81 TVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMW 160 (663)
Q Consensus 81 t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~ 160 (663)
||+||+|||++|+++|+++||+|+|||+||++|||++++|+|||||||+||+|+|+++|+|||||||||.||||||+|||
T Consensus 179 Tv~~YvaLRllG~~~d~~~~~~m~rAR~~Il~~GGa~~~p~w~K~wLA~lG~y~W~g~np~PpElwLLP~~~P~hp~~~~ 258 (759)
T PLN03012 179 TTLNYICMRILGEGPDGGHDNACGRARDWILDHGGATYIPSWGKTWLSILGVFDWSGSNPMPPEFWILPSFFPIHPAKMW 258 (759)
T ss_pred HHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHcCCcccCchHHHHHHHHcCccccCCCCCCChhHHHccCcCCccHHHHH
Confidence 99999999999999997655799999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccC
Q 006042 161 CYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240 (663)
Q Consensus 161 ~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~ 240 (663)
||+|+||+||+||+++||+++++|++.+||+|||++||++|+|...|+.|++.|.|+|++++.+++|..++.++++++..
T Consensus 259 ~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~~a~~D~y~p~~~~~~~~~~~l~~~~~~~l~~ 338 (759)
T PLN03012 259 CYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHLCAKEDAYCPHPLIQDLIWDCLYIFAEPFLAC 338 (759)
T ss_pred HHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccccccccccCCchHHHhhhHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999998888898999998877
Q ss_pred CCCC-hHHHHHHHHHHHHHhhhhcCCCceeeecccchhhccccccccCCCcHHHHHHHHHHhhhheecCCCceeecCCCC
Q 006042 241 WPLN-KLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQ 319 (663)
Q Consensus 241 ~~~~-~l~r~~a~~~~~~~i~~~~~~~~~~~~~~v~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~ 319 (663)
+|+. +| |++|+++++++|.++++++.|++++||+++|+||++++++|+||.+++|+++|.+|+|+.+||+++|+|+||
T Consensus 339 ~~~~~~L-R~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~~~~~k~hl~ri~d~lw~~~dGm~~q~~gSq 417 (759)
T PLN03012 339 WPFNKLL-REKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPNGDHFKKHLLRISDYLWIAEDGMKMQSFGSQ 417 (759)
T ss_pred ccccHHH-HHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCCCCc
Confidence 7644 57 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHH
Q 006042 320 TWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQ 399 (663)
Q Consensus 320 vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 399 (663)
||||+++++||.++|+.+++.+.++||++||.++|++++.+|||..++++.++|||+||+.|++|||+||||++|+|++.
T Consensus 418 vWDTa~~~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sD~TAe~Lka~ll 497 (759)
T PLN03012 418 LWDSGFALQALLASNLSNEIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAWTFSDRDHGWQASDCTAEGFKCCLL 497 (759)
T ss_pred HHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcccccCCCCCCCCCCccHHHHHHHHH
Confidence 99999999999999998877889999999999999998888999999999999999999999999999999999999777
Q ss_pred hcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHh
Q 006042 400 LSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLF 479 (663)
Q Consensus 400 ~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~ 479 (663)
+...+++.+++++.++++.+|++||+++||+ ||||++|+.+++..|+|.+||+|+|+++|+|++++|||+++|++|..+
T Consensus 498 l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~-dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f 576 (759)
T PLN03012 498 FSMIAPDIVGPKMDPEQLHDAVNILLSLQSK-NGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILF 576 (759)
T ss_pred HHhcccccccccccHHHHHHHHHHHHhccCC-CCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHH
Confidence 7655544455667889999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC
Q 006042 480 KKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG 559 (663)
Q Consensus 480 ~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 559 (663)
++..++++.++++++|+||++||++.|++||||+|+||+||+|||++||.||..+|..+.+++.|+||++||+++|++||
T Consensus 577 ~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~DG 656 (759)
T PLN03012 577 KQLYPDHRTEEINAFIKKAAEYIENIQMLDGSWYGNWGICFTYGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKDNG 656 (759)
T ss_pred hhhCcccchhhhHHHHHHHHHHHHHhcCCCCCCcccccccCCcHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCCCC
Confidence 98778887777899999999999999999999999999999999999999999999986567999999999999999999
Q ss_pred CccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccccccccc
Q 006042 560 GWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLH 639 (663)
Q Consensus 560 gWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~ 639 (663)
||||++.||++++|++++++.|++++|||||+||+++|+.+.++++|+||++||+++|++||+|++++++|+||++|||+
T Consensus 657 GWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~~~~G~F~~~~~i~ 736 (759)
T PLN03012 657 GWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQEATGAFLKNCLLH 736 (759)
T ss_pred CcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCceeeeeeccceEEe
Confidence 99999999999999987777899999999999999999876666689999999999999999999999999999999999
Q ss_pred cCCccchHHHHHHHHHHHhCCCC
Q 006042 640 YAEYRNIFPLRALAEYRKRVPLP 662 (663)
Q Consensus 640 y~~y~~~~pl~AL~~y~~~~~~~ 662 (663)
||+|+++|||||||+|++.++.+
T Consensus 737 Y~~Yr~~FPl~ALg~Y~~~~~~~ 759 (759)
T PLN03012 737 YAAYRNIFPLWALAEYRARVPLP 759 (759)
T ss_pred cCccchHHHHHHHHHHHHhccCC
Confidence 99999999999999999988753
No 2
>PLN02993 lupeol synthase
Probab=100.00 E-value=3.8e-162 Score=1365.01 Aligned_cols=657 Identities=67% Similarity=1.266 Sum_probs=623.8
Q ss_pred ChHHHHHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceeh
Q 006042 1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFG 80 (663)
Q Consensus 1 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~ 80 (663)
|+++++||+++|.+||||++|++||+|++|++||++|++|..|++++++++++++|||+++||+||||++|++|+|+||+
T Consensus 99 ~~ra~~~l~~lQ~~DGhW~~e~~g~~fl~~~~Vi~~~~~g~~~~~~~~~~~~ei~ryl~~~Q~~DGGWgl~~eg~s~~~~ 178 (763)
T PLN02993 99 LRRGVSFFSALQASDGHWPGEITGPLFFLPPLVFCLYITGHLEEVFDAEHRKEMLRHIYCHQNEDGGWGLHIESKSVMFC 178 (763)
T ss_pred HHHHHHHHHHhccCCCCcccccCCcchhhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccCCCCcccccCCCccchH
Confidence 57999999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccc
Q 006042 81 TVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMW 160 (663)
Q Consensus 81 t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~ 160 (663)
||+||+|||++|+++++.+||+|+|||+||++|||++++|+|||||||+||+|+|+++|+|||||||||.||||||+|||
T Consensus 179 Tv~~Y~aLRllG~~~d~~~~p~m~rAR~~Il~~GGa~~~~~wtK~wLAllG~y~W~g~~p~PpElwLLP~~~P~hp~~~~ 258 (763)
T PLN02993 179 TVLNYICLRMLGEGPNGGRENACKRARQWILDHGGVTYIPSWGKFWLSILGIYDWSGTNPMPPEIWLLPSFLPIHLGKTL 258 (763)
T ss_pred HHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHcCCcccCchHHHHHHHHcCCcccCCCCCCChhHHHccCcCCccHHHhH
Confidence 99999999999999993223599999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccC
Q 006042 161 CYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240 (663)
Q Consensus 161 ~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~ 240 (663)
||+|+||+||+||+++||++|++|++.+||+|||++||++|+|...|+.|++.|.|+|++++++++++.+.++++|++.+
T Consensus 259 ~~~R~v~vPmsyl~~~r~~~~~~~~i~~lr~ELy~~py~~i~~~~~r~~~~~~d~y~p~~~~~~~~~~~l~~~~~~~l~~ 338 (763)
T PLN02993 259 CYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEEINWNKARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFLTR 338 (763)
T ss_pred HhhhhhHHhHHHHhcCCcccCCCchhhhhhHHhccCCchhcChHhhcCCccccCCCCCchHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999988888888888889998877
Q ss_pred CCCC-hHHHHHHHHHHHHHhhhhcCCCceeeecccchhhccccccccCCCcHHHHHHHHHHhhhheecCCCceeecCCCC
Q 006042 241 WPLN-KLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQ 319 (663)
Q Consensus 241 ~~~~-~l~r~~a~~~~~~~i~~~~~~~~~~~~~~v~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~ 319 (663)
+|++ ++ |++|+++++++|+++++++.|+|++||++++|||++++++|+||.+++|++++.+|+|+.+||+++|+|+||
T Consensus 339 ~p~~~~l-R~~Al~~a~~~i~~ed~~t~y~~i~~vn~~l~ml~~~~~~p~~~~~~~~l~ri~d~lw~~edgm~~q~~gSq 417 (763)
T PLN02993 339 WPLNKLV-REKALQVAMKHIHYEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLARIPDYMWVAEDGMKMQSFGSQ 417 (763)
T ss_pred CcchHHH-HHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhcEEEeCCceEEcCCCCc
Confidence 7766 57 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHH
Q 006042 320 TWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQ 399 (663)
Q Consensus 320 vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 399 (663)
||||+|+++||.++|+.++++++++||.+||.++|++++.+|||..++++.++|||+||+.|++|||+||||++++|++.
T Consensus 418 vWDTa~a~qAl~~agl~~~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW~Fs~~~~gyp~sDdTAe~lka~l~ 497 (763)
T PLN02993 418 LWDTGFAIQALLASDLSDETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAWTLSDRDHGWQVSDCTAEALKCCML 497 (763)
T ss_pred hHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcCcCccCCCCCCcCCchHHHHHHHHH
Confidence 99999999999999997667899999999999999998788999999999999999999999999999999999999887
Q ss_pred hcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHh
Q 006042 400 LSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLF 479 (663)
Q Consensus 400 ~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~ 479 (663)
+.+.+.+.+++++.++++.+|++||++|||+ ||||++|+.+++..|+|.+|++|.|++.|+|+++++||++||++|+.+
T Consensus 498 l~~~~~~~~~~~~~~~~l~~av~wlL~mQn~-dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~ 576 (763)
T PLN02993 498 LSMMPADVVGQKIDPEQLYDSVNLLLSLQSE-NGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLF 576 (763)
T ss_pred HhhCccccccccchHHHHHHHHHHHHhhccC-CCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHh
Confidence 7766544445667789999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC
Q 006042 480 KKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG 559 (663)
Q Consensus 480 ~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 559 (663)
++..++++.++++++|+||++||++.|++||||+|+||+|++|+|++||.||..+|..+.+.+.|+||++||+++|++||
T Consensus 577 ~~~~p~~r~~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q~~DG 656 (763)
T PLN02993 577 KQLYPDHRTKEIIKSIEKAVQFIESKQTPDGSWYGNWGICFIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQRDDG 656 (763)
T ss_pred cccCcchhhhhHHHHHHHHHHHHHHhcCCCCCcccccccccCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCCC
Confidence 87667777788899999999999999999999999999999999999999999999986456899999999999999999
Q ss_pred CccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccccccccc
Q 006042 560 GWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLH 639 (663)
Q Consensus 560 gWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~ 639 (663)
||||++.||.+++|++++++.|++++||||++||+++|+.+.++++|+||++||+++|+++|+|++++++|+||++|||+
T Consensus 657 GWGEs~~S~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~~~~G~F~~~~~i~ 736 (763)
T PLN02993 657 GWGESYLSCPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQEILGAFMNTCMLH 736 (763)
T ss_pred CcCcCcCcCCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCcceeceECccceec
Confidence 99999999999999987777899999999999999999865555689999999999999999999999999999999999
Q ss_pred cCCccchHHHHHHHHHHHhC
Q 006042 640 YAEYRNIFPLRALAEYRKRV 659 (663)
Q Consensus 640 y~~y~~~~pl~AL~~y~~~~ 659 (663)
||+|+++|||||||+|++..
T Consensus 737 Y~~Yr~~FPl~ALg~Y~~~~ 756 (763)
T PLN02993 737 YATYRNTFPLWALAEYRKAA 756 (763)
T ss_pred cCccchHHHHHHHHHHHHhh
Confidence 99999999999999999864
No 3
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=8.4e-140 Score=1190.42 Aligned_cols=630 Identities=37% Similarity=0.691 Sum_probs=580.7
Q ss_pred HHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceehhHHHH
Q 006042 6 HYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSY 85 (663)
Q Consensus 6 ~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~t~~~y 85 (663)
.+|+++|.+||||++|++|++|+||++||++|++|+ +++++.+++++|||+++||+||||++|++++|+||+||+||
T Consensus 2 ~~l~~~Q~~dG~W~~e~~~~~~~~a~~i~~~~~~~~---~~~~~~~~~~~~yl~~~Q~~dGgWgl~~~~~~~~~~T~~~Y 78 (634)
T TIGR03463 2 ARLTETQQPAGCWEGEMIWCPVVTAQVAITRHVVGR---PPEPEQRAGIIRHFENSQLADGAWGLHPEAPGQVFTTVLNY 78 (634)
T ss_pred hhHHhcccCCCccccccCCccccCHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhccCCCCccCCCCCCcchHHHHHHH
Confidence 589999999999999999999999999999999995 45578899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCchHHHHHHHHHHhc-CCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccccccc
Q 006042 86 LCMRLLGLGPNDGENNACARARKWIRDH-GGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCR 164 (663)
Q Consensus 86 ~aL~l~G~~~~~~~~~~~~~ar~~i~~~-GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~~~~r 164 (663)
+|||++|++++++ +|+|||+||+++ ||++++|+|||||||++|+|||+++|+|||||||||+||||||+|||||+|
T Consensus 79 ~aLrl~G~~~~~~---~~~rAr~~i~~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~P~El~lLP~~~P~~~~~~~~~~R 155 (634)
T TIGR03463 79 VALRLLGVGKEDA---GLARARQWLHAQPGGVLGSPTWGKFWLALLGLYGRGGLQPVPPELWLLPESLPFHPSRFYCHTR 155 (634)
T ss_pred HHHHHcCCCCCCH---HHHHHHHHHHhCCCCcccCchHHHHHHHHcCcCCcccCCCCCHHHHHccccCCcCHHHHHHHhH
Confidence 9999999999874 999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccCCCCC
Q 006042 165 LVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLN 244 (663)
Q Consensus 165 ~~~~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (663)
+|++||+||+++|++++++|++.+||+|||+.|+++++|...|..+++.|.|.|.+++...+...+.. ++. +++.
T Consensus 156 ~v~~p~~~l~~~r~~~~~~~~~~~l~~EL~~~~~~~~~~~~~~~~~~~~d~~~p~~~~~~~~~~~l~~-~~~----~~~~ 230 (634)
T TIGR03463 156 MVYLPMSWLYGRRARAPLTPLRAALRQELYDGGYGQVDFVAARERVAPTDVFTPRTFWLRAANQVMYG-YER----LAGK 230 (634)
T ss_pred HHHHhHHHHhcCCcccCCCcchhhhhHHhccCCccccccccccCccccccccCCcHHHHHHHHHHHHH-hhc----cCCH
Confidence 99999999999999999999988999999999999999999999888889998988776666554433 333 2345
Q ss_pred hHHHHHHHHHHHHHhhhhcCCCceeeecccchhhccccccccCCCcHHHHHHHHHHhhhheecCC-CceeecCCCCchHH
Q 006042 245 KLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGED-GMKVQTFGSQTWDT 323 (663)
Q Consensus 245 ~l~r~~a~~~~~~~i~~~~~~~~~~~~~~v~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~-g~~~~~~~s~vwdT 323 (663)
++ |++|+++++++|..|+++++|.+++||+++++||++++++|+||.++||+++|++|+|..+| |+++|+|.|++|||
T Consensus 231 ~l-r~~A~~~~~~~i~~~~~~~~~~~i~p~~~~~~~l~~~g~~~~~p~~~k~l~~l~~~~~~~~~~g~~~q~~~s~~WDT 309 (634)
T TIGR03463 231 QL-RARALDFCLEQIRAEDEATHYICISPVNGVLNMLAWFAVNPDGPEVAAHLEGLEDYRYEDDDRGLRYNGYNSSEWDT 309 (634)
T ss_pred HH-HHHHHHHHHHHHHHHhcCCCeEehHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhEEEcCCCCEEEeeCCCCchhH
Confidence 68 99999999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred HHHHHHHHHcCCC-CchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcC
Q 006042 324 ALGLQALMACNIA-DEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSL 402 (663)
Q Consensus 324 al~~~AL~~ag~~-~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~ 402 (663)
+++++||.++|.. +++++.++||++||.++|+++ ..|||...+++.++|||+|++.+++|||+||||++|+||..+.+
T Consensus 310 ala~~AL~e~g~~~~~~~~~l~kA~~wL~~~Q~~~-~~gd~~~~~~~~~~GGW~f~~~~~~~pdsD~Ta~~L~Al~~~~~ 388 (634)
T TIGR03463 310 AFAVQALAATPETAGRHRRMLERAARFLEANQMLE-DTAEPQRFFRDPAKGGWCFSDGDHGWPVSDCTAEALSASLVLEP 388 (634)
T ss_pred HHHHHHHHHcCCCchhhhHHHHHHHHHHHHhcCCc-CCCCchhcCCCCCCCccccccCCCCCCccccHHHHHHHHHHHhh
Confidence 9999999999964 355789999999999999976 34899989999999999999999999999999999999988754
Q ss_pred CCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhh
Q 006042 403 MPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKL 482 (663)
Q Consensus 403 ~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~ 482 (663)
.+.. ..+.+.++++++|++||++|||+ ||||++|+.++++.|+|++|++|.|++.++|+++++||+++|.+|..+++.
T Consensus 389 ~~~~-~~~~~~~~~l~~av~~Ll~~Qn~-dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~ 466 (634)
T TIGR03463 389 LGLN-PEERVPQARLQDAVEFILSRQNE-DGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKH 466 (634)
T ss_pred cCCc-ccccccHHHHHHHHHHHHHhcCC-CCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhc
Confidence 2210 00125678999999999999999 999999999999999999999999999999999999999999999998866
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCcc
Q 006042 483 YPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWG 562 (663)
Q Consensus 483 ~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg 562 (663)
.+.++.++++++|+||++||++.|++||+|+++||++++|+|++|+.||..+|... .++.++||++||+++|++||||+
T Consensus 467 ~~~~~~~~i~~ai~rav~~L~~~Q~~dGsW~g~Wg~~~~Y~T~~al~aL~~~G~~~-~~~~i~rA~~~Ll~~Q~~DGgWg 545 (634)
T TIGR03463 467 HPHVPDGRITRAISRGVRFLRSRQREDGSFPGSWGVCFTYGTFHGVMGLRAAGASP-DDMALQRAAAWLRSYQRADGGWG 545 (634)
T ss_pred CcchhhhHHHHHHHHHHHHHHHhcCCCCCccccCCCCCcHHHHHHHHHHHHcCCCc-CcHHHHHHHHHHHHccCCCCCcc
Confidence 55555667888999999999999999999999999999999999999999999864 57999999999999999999999
Q ss_pred CCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccccccccccCC
Q 006042 563 ESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAE 642 (663)
Q Consensus 563 ~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~ 642 (663)
+.+.+|.++.|.+ +..|++++|||||+||..+|..+ .+.++|+++||+++|++||+|+++.++|+||++|||+||+
T Consensus 546 ~~~~s~~~~~y~~--~~~S~~~~TA~Al~aL~~~g~~~--~~~i~rgi~~L~~~Q~~dG~W~~~~~~G~f~~~~~l~Y~~ 621 (634)
T TIGR03463 546 EVYESCLQARYVE--GKQSQAVMTSWALLALAEAGEGG--HDAVQRGVAWLRSRQQEDGRWPREPINGVFFGTAMLDYDL 621 (634)
T ss_pred CccCccccccccC--CCCCcHHHHHHHHHHHHHcCCcC--CHHHHHHHHHHHHhCCCCCCCCCCceeeeeCcceeEecCc
Confidence 9999999999975 66899999999999999998753 3579999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHH
Q 006042 643 YRNIFPLRALAEY 655 (663)
Q Consensus 643 y~~~~pl~AL~~y 655 (663)
|+++|||||||+|
T Consensus 622 Y~~~fpl~ALg~y 634 (634)
T TIGR03463 622 YLRYFPTWALAVC 634 (634)
T ss_pred cchHhHHHHhhcC
Confidence 9999999999997
No 4
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=100.00 E-value=2e-140 Score=1131.91 Aligned_cols=658 Identities=66% Similarity=1.216 Sum_probs=638.8
Q ss_pred ChHHHHHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceeh
Q 006042 1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFG 80 (663)
Q Consensus 1 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~ 80 (663)
+++++.|+..+|.+||||+++++||+|.++.+||.+|++|..+.+++.+++.+++||+.++||+|||||+|++++|.||+
T Consensus 99 lrrgi~f~~~LQa~DGhwp~~~~GPlf~~~~~v~~~yitg~l~~~~~~ehr~Eliry~ynhqn~DGGWGlhve~~S~mF~ 178 (760)
T KOG0497|consen 99 LRRGLLFFSALQAPDGHWPGEYSGPLFFLPPLVICLYITGHLEKIFTAEHRKEILRYIYNHQNEDGGWGLHVEGKSTMFC 178 (760)
T ss_pred hhhhHHHHHHhcCCCCCCCCCCCCChhhhhhhhheeeecccCCcccCcccHHHHHHHHHhccCCCCCccccccCceeEEE
Confidence 46889999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccc
Q 006042 81 TVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMW 160 (663)
Q Consensus 81 t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~ 160 (663)
||+||++||++|+.++++..-.|++||.||+.|||+..+|.|+|+||+++|+|+|++++|+|||+|+||.|+|+||+++|
T Consensus 179 TvlNYi~LRilG~~~~~~~~~a~~~aR~wild~GGa~~~p~wgK~wLsvLgvydWsG~np~pPElwllP~~~P~h~g~~w 258 (760)
T KOG0497|consen 179 TVLNYICLRILGEGPDHGDESACKRARKWILDHGGATYIPSWGKFWLSVLGVYDWSGVNPLPPELWLLPSFLPIHPGTLW 258 (760)
T ss_pred eeehheeheeeccCCCCCchhHHHHHHHHHHHcCCccccchhhHHHHHhcccccCcCCCCCCchhhccccccCCCCCceE
Confidence 99999999999999998732379999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccC
Q 006042 161 CYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240 (663)
Q Consensus 161 ~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~ 240 (663)
||+|.+|+||+|++++||+++.+|++..||+|||++||.+|+|...|+.|++.|.|+|++.+++++|+.+.++.++++.+
T Consensus 259 ~~~R~vy~pmsYlygkrfv~~~tpli~~LreELy~~py~~Inw~~~Rn~~akeDlyyphs~i~D~l~~~l~~~~e~ll~r 338 (760)
T KOG0497|consen 259 CHCRDVYMPMSYLYGKRFVAPPTPLILQLREELYPEPYDKINWSKARNLCAKEDLYYPHSLLQDLLWALLHKFSEPLLNR 338 (760)
T ss_pred EEecceecccccceeeeeeccCChHHHHHhhhhcCCChhhhhHHHHhhccccccccCCcHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhhhhcCCCceeeecccchhhccccccccCCCcHHHHHHHHHHhhhheecCCCceeecCCCCc
Q 006042 241 WPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQT 320 (663)
Q Consensus 241 ~~~~~l~r~~a~~~~~~~i~~~~~~~~~~~~~~v~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~v 320 (663)
||. .++|++|++.++|+|.++|++++|++++||+++++||+++.++|++..+++|+.++.||+|+.+||+++|+++||+
T Consensus 339 Wp~-~~~R~~a~~~~me~ihyede~t~yi~ig~v~k~~~ml~cwvedp~s~~Fkkhl~Ri~d~lw~gedGmkmq~~~sQ~ 417 (760)
T KOG0497|consen 339 WPL-KLIREKALRTAMELIHYEDENTRYITIGPVNKAFNMLACWVEDPNSDAFKKHLARIPDFLWIAEDGMKMQGFNSQL 417 (760)
T ss_pred hhh-HHHHHHHHHHHHHHhhhhhcccCceecccchhhhcceeeeeeccchHHHHHHhccccCeEEEcCCCceEeecchhH
Confidence 998 5559999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHh
Q 006042 321 WDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQL 400 (663)
Q Consensus 321 wdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~ 400 (663)
|||+++++|+.++++.+|+.+.++|+.+||.+.|.++++.|+...+|++.++|||+||+.+++||++||||+++.+.+.+
T Consensus 418 Wdt~falqalla~~~~~E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~wtfS~~d~gw~vsDctaEal~~~lll 497 (760)
T KOG0497|consen 418 WDTAFALQALLAAGLVDEFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGWTFSDRDQGWPVSDCTAEALKCCLLL 497 (760)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccccCCCcchhhheeccccccccccccccceeeccccHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999998888
Q ss_pred cCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhh
Q 006042 401 SLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFK 480 (663)
Q Consensus 401 ~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~ 480 (663)
+..|.+.+++.++.+++.++++.|+.+|+. +||+.+++..++..|+|.++|+|+|++.++++.+++||+.++.+|..+.
T Consensus 498 ~~~~~~~vg~~~~~erL~dav~~Ll~lq~~-~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~ 576 (760)
T KOG0497|consen 498 SSMPSEIVGEKIDVERLYDAVDVLLYLQSE-NGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFH 576 (760)
T ss_pred cCCChhhccCCCCHHHHHHHHHHHHhhhhc-cCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhc
Confidence 888877889999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCC
Q 006042 481 KLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGG 560 (663)
Q Consensus 481 ~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGg 560 (663)
+.+|++|..+|+..|.+|++||.+.|.+||||+|+||+|++|+|++++.||.++|..+.+...++|||+||++.|++|||
T Consensus 577 k~~p~~r~~Ei~~~i~~av~~ie~~Q~~DGSWyGsWgvCFtY~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~~GG 656 (760)
T KOG0497|consen 577 KLFPGHRKKEIEKSIEKAVEFIEKLQLPDGSWYGSWGVCFTYGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNPDGG 656 (760)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred ccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCcccccccccccccc
Q 006042 561 WGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHY 640 (663)
Q Consensus 561 Wg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~y 640 (663)
|||+..||..++|.+++|..|.+++|+||+++|..+|+.+.++-++.|+++.|+..|.++|.|++++++|+|+++|+|+|
T Consensus 657 WgEs~lscp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q~~rd~~P~hr~ak~linsQ~~nGdfpqq~i~g~f~~~~~~~y 736 (760)
T KOG0497|consen 657 WGESYLSCPEKRYIPLEGNKSNVVQTAWALMALIMAGQAERDPLPLHRAAKVLINSQLENGDFPQQEIEGVFNKNCMIHY 736 (760)
T ss_pred CccccccCccccccccccccccchhHHHHHHHHHhcCCcccccchHHHHHHHHHhcccccCCcchhHHHHHhhhhhhhcc
Confidence 99999999999999999999999999999999999999887766899999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHhCC
Q 006042 641 AEYRNIFPLRALAEYRKRVP 660 (663)
Q Consensus 641 ~~y~~~~pl~AL~~y~~~~~ 660 (663)
++||++||||||++|++.+.
T Consensus 737 ~~yr~~F~~waL~~y~~~~~ 756 (760)
T KOG0497|consen 737 PTYRNIFPIWALGEYRKAYR 756 (760)
T ss_pred chhhhhccHHHHHHHHHHhh
Confidence 99999999999999999765
No 5
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=9.6e-130 Score=1106.79 Aligned_cols=606 Identities=26% Similarity=0.445 Sum_probs=539.0
Q ss_pred ChHHHHHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceeh
Q 006042 1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFG 80 (663)
Q Consensus 1 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~ 80 (663)
|+++.+||+++|.+||||++|++||+|+||++||++|++|+.+ ++.++++++||+++||+||||++|++++|+||+
T Consensus 18 ~~~~~~~l~~~Q~~dG~W~~e~~~~~~~~a~~i~~~~~~g~~~----~~~~~~~~~~l~~~Q~~DGgWg~~~~~~~~~~~ 93 (635)
T TIGR01507 18 IDRAVDYLLSCQKDEGYWWGELESNVTIEAEYVLLCHILDRVD----RDRMEKIRNYLLHEQREDGTWALYPGGPGDLST 93 (635)
T ss_pred HHHHHHHHHHhccCCCccccccCCcchhcHHHHHHHHHHCCCc----HHHHHHHHHHHHHhccCCCCccCccCCCcchhH
Confidence 4789999999999999999999999999999999999999643 678999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccc
Q 006042 81 TVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMW 160 (663)
Q Consensus 81 t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~ 160 (663)
||+||+|||++|+++++| +|+|||+||+++||+.++|+|||||||++|+|||+++|+|||||||||.||||||++||
T Consensus 94 Tv~~Y~aLrl~G~~~~~~---~m~rAr~~I~~~GG~~~~~~~tk~~LAl~G~~~W~~~~~~P~El~llP~~~p~~~~~~~ 170 (635)
T TIGR01507 94 TVEAYVALKYIGMSRDEP---PMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWRGVPMVPPEIMLLPKRFPFNIYEFS 170 (635)
T ss_pred HHHHHHHHHHhCCCCCcH---HHHHHHHHHHHcCCcccccHHHHHHHHHcCCcCcccCCCCCHHHHhCCCcCCccHHHHH
Confidence 999999999999999884 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHhhcCCCCccCCchhHhhH-hhhccCCCcccchhhhccccCCCCCCCCchh-HHHHHHHHHHHhhhccc
Q 006042 161 CYCRLVYMPVSYLYGKRFVGPITPLIQQLR-EELHTQPYNEINWRKVRHLCSKEDLYYPHPF-VQELLWDTLYLASEPLL 238 (663)
Q Consensus 161 ~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~-~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~-~~~~~~~~~~~~~~~~~ 238 (663)
||+|+|++||+||+++|++++++ ..+| +|||..|+.+ .|+.+++.| .++ +...+...+ +.++.+
T Consensus 171 ~~~R~~~~P~~~l~~~r~~~~~~---~~~~~~eL~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~l-~~~~~l- 236 (635)
T TIGR01507 171 SWARATVVPLSIVCSRKPVFPLP---ERARVPELYETDVPK-----PRRRGAKGG----TGWGIFDALDRAL-HGYEKL- 236 (635)
T ss_pred HHHHHHHHHHHHHhcCCCccCCC---cccChHhhcCCChHH-----hcccCCccC----CcHHHHHHHHHHH-HHHHhc-
Confidence 99999999999999999998765 3455 9999998853 344444333 223 333332222 334432
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhhcCCCc-eeeecccchhhcccccc---ccCCCcHHHHHHHHHHhhhheecCCCceee
Q 006042 239 TRWPLNKLIRQKALKETMKFIHYEDHNSR-YITIGCVEKPLCMLACW---VEDPNGIAFKKHLNRIADYIWLGEDGMKVQ 314 (663)
Q Consensus 239 ~~~~~~~l~r~~a~~~~~~~i~~~~~~~~-~~~~~~v~~~l~~l~~~---~~~p~~~~~~~~~~~l~~~~~~~~~g~~~~ 314 (663)
++..+ |++|+++++++|..+++.++ |.++.| ++++||+.+ +..|+||.++||++++++++|..++|+++|
T Consensus 237 ---~~~~l-r~~A~~~a~~~i~~~~e~~g~~~~i~p--~~~~~l~~l~~~g~~~~~~~~~~~l~~l~~~~~~~~~g~~~~ 310 (635)
T TIGR01507 237 ---SVHPF-RRAAEIRALDWLLERQAGDGSWGGIQP--AMFNALIALKILGMTQHDAFIKLGWEGIDLYGVELDDSWMFQ 310 (635)
T ss_pred ---CCcHH-HHHHHHHHHHHHHHHHcCCCceeecch--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHheEecCCceEec
Confidence 23457 99999999999999988777 888888 455554443 456899999999999999999988999999
Q ss_pred cCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHH
Q 006042 315 TFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGL 394 (663)
Q Consensus 315 ~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al 394 (663)
+++|++|||+++++||.++|++++ ++.++||.+||.+.|++. .|+|.+.+++..+|||+|++.+++|||+||||+++
T Consensus 311 ~~~s~vWDTa~ai~AL~~ag~~~~-~p~l~kA~~~L~~~Qi~~--~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L 387 (635)
T TIGR01507 311 ACVSPVWDTALAVLALREAGLPAD-HDALVKAGEWLLDKQITV--PGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVV 387 (635)
T ss_pred CCCCcHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHhhcccC--CCCccccCCCCCCCccCCCCCCCCCCCchhHHHHH
Confidence 999999999999999999998776 799999999999999974 48999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCccccccc--ccccccccCcHHHH
Q 006042 395 KCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLED--LIVEHTYVECTASA 472 (663)
Q Consensus 395 ~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~--~~~d~~~~~~Ta~~ 472 (663)
+||..++ .++ ++..++++++|++||+++||+ ||||++|+.+++..|++++| |++ .|+|+|+++||+++
T Consensus 388 ~AL~~~~-~~~----~~~~~~~i~ra~~wLl~~Qn~-dGgw~af~~~~~~~~l~~~~----f~d~~~~~D~~~~d~Ta~~ 457 (635)
T TIGR01507 388 WALNGLR-LPD----ERRRRDAMTKAFRWIAGMQSS-NGGWGAFDVDNTSDLLNHIP----FCDFGAVTDPPTADVTARV 457 (635)
T ss_pred HHHHHcC-CCc----cccchHHHHHHHHHHHHhcCC-CCCEecccCCcchhHHhcCC----ccccccccCCCCccHHHHH
Confidence 9998863 221 235678999999999999999 99999999999999999997 555 78999999999999
Q ss_pred HHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHH
Q 006042 473 IEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLL 552 (663)
Q Consensus 473 L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll 552 (663)
|++|+.++.. . .+++|+||++||++.|++||+|+|+|+++++|+|+.+|.+|...|... .++.|+||++||+
T Consensus 458 l~al~~~g~~-~------~~~~i~rav~~L~~~Q~~dG~W~g~wg~~~~Y~T~~al~aL~~~g~~~-~~~~i~rAv~wL~ 529 (635)
T TIGR01507 458 LECLGSFGYD-D------AWPVIERAVEYLKREQEPDGSWFGRWGVNYLYGTGAVLSALKAVGIDT-REPYIQKALAWLE 529 (635)
T ss_pred HHHHHHhCCC-c------hhHHHHHHHHHHHHccCCCCCCccCCCCccccHHHHHHHHHHHcCCCc-ccHHHHHHHHHHH
Confidence 9999987632 1 157899999999999999999999999999999999999999998764 5899999999999
Q ss_pred hhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccc-
Q 006042 553 NAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGV- 631 (663)
Q Consensus 553 ~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~- 631 (663)
++|++||||++++.+|.++.|.+ .+.|++++|||||+||..++..+ .+.|+||++||+++|++||+|+++.++|+
T Consensus 530 ~~Q~~DGGWge~~~sy~~~~~~g--~g~s~~s~TA~AL~AL~~ag~~~--~~~I~rav~~L~~~Q~~dG~W~e~~~~g~g 605 (635)
T TIGR01507 530 SHQNPDGGWGEDCRSYEDPAYAG--KGASTASQTAWALIALIAAGRAE--SEAARRGVQYLVETQRPDGGWDEPYYTGTG 605 (635)
T ss_pred HhcCCCCCCCCCCcccccccccC--CCCCcHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHhcCCCCCCCCcccccCc
Confidence 99999999999999999888865 45899999999999999998763 35799999999999999999999999999
Q ss_pred cccccccccCCccchHHHHHHHHHHHh
Q 006042 632 FMRNCMLHYAEYRNIFPLRALAEYRKR 658 (663)
Q Consensus 632 f~~~~~~~y~~y~~~~pl~AL~~y~~~ 658 (663)
||++|||+||+|+++|||||||+|++.
T Consensus 606 fp~~~yi~Y~~Y~~~fpl~ALg~y~~~ 632 (635)
T TIGR01507 606 FPGDFYLGYHMYRHVFPLLALARYKQA 632 (635)
T ss_pred ccceeeecccchhhHhHHHHHHHHHHh
Confidence 999999999999999999999999984
No 6
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=3.5e-129 Score=1113.94 Aligned_cols=632 Identities=50% Similarity=0.940 Sum_probs=570.3
Q ss_pred ChHHHHHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceeh
Q 006042 1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFG 80 (663)
Q Consensus 1 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~ 80 (663)
|+++.+||+++|++||||++|++||+|++|++||++|++|+ ++++++++++++||+++||+||||++|++++|+||+
T Consensus 1 ~~~~~~~l~~~q~~dG~W~~e~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~q~~dGgw~~~~~~~~~~~~ 77 (634)
T cd02892 1 IRRALEFLLSLQAPDGHWPGELEGPLFITAEYILLLYILGI---PIDPEHRKEIARYLRNHQNPDGGWGLHHEGPSTMFG 77 (634)
T ss_pred ChHHHHHHHHhccCCCceecccCCcchhhHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhccCCCCccCCCCCCcchHH
Confidence 68999999999999999999999999999999999999996 445889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccc
Q 006042 81 TVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMW 160 (663)
Q Consensus 81 t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~ 160 (663)
||+||+|||++|+++++| +|+|||+||+++||++++|+|||||||++|+|||+++|+|||||||||+||||||++||
T Consensus 78 T~~~Y~aLrl~G~~~~~~---~m~~Ar~~i~~~GG~~~~~~~~k~~La~~G~~~W~~~~~~P~El~llP~~~p~~~~~~~ 154 (634)
T cd02892 78 TVLNYVALRLLGVSPDDP---HMVKARNWILSHGGAARIPVWGKIWLALLGVYPWEGVPPLPPELWLLPSWLPFHPYKFW 154 (634)
T ss_pred HHHHHHHHHHcCCCCCCH---HHHHHHHHHHHcCCcccccHHHHHHHHHcCccccccCCCCCHhHHhcCCcCCccHHHHH
Confidence 999999999999999984 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccC
Q 006042 161 CYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240 (663)
Q Consensus 161 ~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~ 240 (663)
||+|+|++||+||+++|+++|+++++..+|+|||+.|+++++|...|+ ++.|.+.|.+.+...+...+ +.++.
T Consensus 155 ~~~R~~~~p~~~l~~~r~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~---- 227 (634)
T cd02892 155 CWARTVYVPMSYLYGKRPVAPITPLVLSLRDELYVEPYEKINWYKHRN--DLYDYRPPWQRLFDALDRLL-HWYEP---- 227 (634)
T ss_pred HHHHHHHHhHHHHhcCCcccCCCCccccchHHhCCCCccccccccccc--ccccCCCChHHHHHHHHHHH-HHHHh----
Confidence 999999999999999999999888888999999999999999998887 55676666665554443333 33333
Q ss_pred CCCChHHHHHHHHHHHHHhhhhcCCCceeeecccchhhccccccccC-CCcHHHHHHHHHHhhhheecCCCcee-ecCCC
Q 006042 241 WPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVED-PNGIAFKKHLNRIADYIWLGEDGMKV-QTFGS 318 (663)
Q Consensus 241 ~~~~~l~r~~a~~~~~~~i~~~~~~~~~~~~~~v~~~l~~l~~~~~~-p~~~~~~~~~~~l~~~~~~~~~g~~~-~~~~s 318 (663)
++++++ |++|+++++++|..+++++++++..|++++++|++++..+ |+||.++++++++.+|+|..+||+.+ +.++|
T Consensus 228 ~~~~~l-r~~a~~~~~~~i~~~q~~~g~~~~~~~~~~l~~lal~~~g~~~~~~~~~~l~~l~~~~~~~~~g~~~~~~~~s 306 (634)
T cd02892 228 LPPKPL-RRKALRKAYEWILYRDENTGYLGIIPPPKANNMLALWVLGYPDSPAFKRHLERIDDFLWLGPEGMKMCQTNGS 306 (634)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHhcCCCceeeeehHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcEEEecCCcEEEcCCCC
Confidence 234558 9999999999999999999999999999999998887554 89999999999999999998888665 45599
Q ss_pred CchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHH
Q 006042 319 QTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVL 398 (663)
Q Consensus 319 ~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 398 (663)
++|||+++++||.++|..+++++.++||++||.++|+++ ..|+|...+++.++|||+|++.++++||+||||++++||.
T Consensus 307 ~~wDTala~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~-~~gdw~~~~~~~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~ 385 (634)
T cd02892 307 QVWDTALAVQALLEAGLAPEFDPALKKALDWLLESQILD-NPGDWKVKYRHLRKGGWAFSTANQGYPDSDDTAEALKALL 385 (634)
T ss_pred chHHHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHcCC-CCCchhhhCCCCCCCCCCCCCCCCCCCCcCchHHHHHHHH
Confidence 999999999999999987566899999999999999833 5599999999999999999999999999999999999999
Q ss_pred HhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHH
Q 006042 399 QLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFML 478 (663)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~ 478 (663)
.++..+.. +..++.+++++|++||+++||+ ||||.+|+..++..|++.++|++.|++.++|+++++||+++|++|..
T Consensus 386 ~~~~~~~~--~~~~~~~~i~~Av~wLl~~Qn~-dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~ 462 (634)
T cd02892 386 RLQELPPF--GEKVSRERLYDAVDWLLGMQNS-NGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGL 462 (634)
T ss_pred HhhccCCc--chhhHHHHHHHHHHHHHhccCC-CCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHH
Confidence 88754321 2345778999999999999999 99999999888888788888899999899999999999999999999
Q ss_pred hhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCC
Q 006042 479 FKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDD 558 (663)
Q Consensus 479 ~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 558 (663)
++...+.++. ++++.++||++||++.|++||+|+++||++++|+|++++.||..+|.....++.++++++||+++|++|
T Consensus 463 ~~~~~~~~r~-~i~~~i~rAv~~L~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~D 541 (634)
T cd02892 463 FGKLYPGHRR-EIDPAIRRAVKYLLREQEPDGSWYGRWGVCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPD 541 (634)
T ss_pred hcccCcchHH-HHHHHHHHHHHHHHHccCCCCCccccCCCccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCC
Confidence 8765444443 678899999999999999999999999999999999999999999876335789999999999999999
Q ss_pred CCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCcccccccccccc
Q 006042 559 GGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCML 638 (663)
Q Consensus 559 GgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~ 638 (663)
|||++++.+|.++.|.+ ++.+++++|||||++|+.++..+ .+.++++++||+++|+++|+|.+++++|+|+..|||
T Consensus 542 GgWge~~~s~~~~~~~~--~~~s~~~~TA~AllaLl~~g~~~--~~~i~r~i~wL~~~Q~~~G~w~~~~~~g~~~~~~~~ 617 (634)
T cd02892 542 GGWGESYLSYEDKSYAG--GGRSTVVQTAWALLALMAAGEPD--SEAVERGIKYLLNTQLPDGDWPQEEITGVGFPNFYI 617 (634)
T ss_pred CCCCCccccccCcccCC--CCCCcHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHHcCCCCCCCCCcccccccCCCeee
Confidence 99999998888887854 66899999999999999998753 357999999999999999999999999997777999
Q ss_pred ccCCccchHHHHHHHHH
Q 006042 639 HYAEYRNIFPLRALAEY 655 (663)
Q Consensus 639 ~y~~y~~~~pl~AL~~y 655 (663)
+||+|+++|||||||||
T Consensus 618 ~y~~Y~~~fpl~ALg~y 634 (634)
T cd02892 618 RYHNYRNYFPLWALGRY 634 (634)
T ss_pred ccCchhhHhHHHHhhcC
Confidence 99999999999999997
No 7
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=1.8e-128 Score=1096.90 Aligned_cols=616 Identities=43% Similarity=0.791 Sum_probs=543.6
Q ss_pred ChHHHHHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceeh
Q 006042 1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFG 80 (663)
Q Consensus 1 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~ 80 (663)
|+++.+||+++|.+||||++|++||+|++|++||++|++|+.+ ++.++++++||+++||+||||++|++++|+||+
T Consensus 2 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~a~~i~~~~~~g~~~----~~~~~~~~~~l~~~Q~~DGgW~~~~~~~~~~~~ 77 (621)
T TIGR01787 2 ARRAVEFLLSLQAPDGYWWGELEGPLTLLAEYVLLCHIADTPL----PGYREKIVRYLRHHQNEDGGWGLHIGGKSTVFG 77 (621)
T ss_pred HHHHHHHHHHhccCCCceecccCCccccCHHHHHHHHHhcCCC----hHHHHHHHHHHHHhcCCCCCeeCCcCCCcchHH
Confidence 5799999999999999999999999999999999999999643 378999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccc
Q 006042 81 TVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMW 160 (663)
Q Consensus 81 t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~ 160 (663)
||+||+|||++|+++++| +|+|||+||+++||++++|+|||||||++|+|||+++|+|||||||||+|||||++++|
T Consensus 78 Tv~aY~aLrl~G~~~~~~---~m~~Ar~~i~~~GG~~~~~~~~k~~La~~G~~~W~~~~~~P~El~llP~~~p~~~~~~w 154 (621)
T TIGR01787 78 TVLAYVALKILGMSPDDP---AMVRARNFILKQGGAVASPVFTKFWLALLGVYPWEGVPPLPPEIMLLPKWLPIHPSKSW 154 (621)
T ss_pred HHHHHHHHHHcCCCCCcH---HHHHHHHHHHHcCCcccCchHHHHHHHHcCccccccCCCCCHhHHhcCcccCcCcchhh
Confidence 999999999999999884 99999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccC
Q 006042 161 CYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240 (663)
Q Consensus 161 ~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~ 240 (663)
||+|+|++||+|++..|+..+.+| |+|||+.| +++ ...|+.+++.|.|+|.+++...+.........++
T Consensus 155 ~~~~~v~l~~~~~~~~~~~~~~~~-----~~el~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 223 (621)
T TIGR01787 155 CRCRMVYLPMSYCYGERLSAPIDP-----REELYVED-DSI--RAQRNNVAKEDLYTPHSWLLRALYGLLNLFYHPF--- 223 (621)
T ss_pred hhhhhHHHHHHHHcCccccCCCCc-----chhhcCCC-cch--hhccCCCCcccccccHHHHHHHHHHHHhhccccc---
Confidence 999999999999999999987766 59999998 655 4567777778888888776655432221111111
Q ss_pred CCCChHHHHHHHHHHHHHhhhhcCCCceeeecccchhhccccccccC-CCcHHHHHHHHHHhhhheecCCCceeecCCCC
Q 006042 241 WPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVED-PNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQ 319 (663)
Q Consensus 241 ~~~~~l~r~~a~~~~~~~i~~~~~~~~~~~~~~v~~~l~~l~~~~~~-p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~ 319 (663)
+ |+.|+++++++|..+++.++ ++++++++++|+++...+ ||||.+++|+++|++++|+.+||+++|+|+|+
T Consensus 224 -----~-~~~a~~~a~~~~~~~~~~~g--~~~~i~~~~~~~al~~~g~~d~p~~~~~l~~l~~~~~~~~dg~~~q~~~s~ 295 (621)
T TIGR01787 224 -----L-RKALRKRALQWLYEHIAADG--SIGPISKAMAMLALWFLDGPNSPAFQKHLQRIDDYLWLQLDGMKMQGTGSQ 295 (621)
T ss_pred -----c-cHHHHHHHHHHHHHHhccCC--CchhHhHHHHHHHHHHcCCCCCHHHHHHHHHHhhcEEEeCCccEEecCCCc
Confidence 2 44555555555555544444 778888888888886554 79999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHcCC--CCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHH
Q 006042 320 TWDTALGLQALMACNI--ADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCV 397 (663)
Q Consensus 320 vwdTal~~~AL~~ag~--~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 397 (663)
||||+++++||.++|. .++.++.++||++||.++|++++++|+|..+.++..+|||+||+.|++|||+|||+.+++++
T Consensus 296 vWDTalai~AL~~ag~~~~~~~~~~i~ka~~wL~~~Q~~~~~~g~~~~~~~~~~pGgW~fs~~~~~~PdvdDta~~~la~ 375 (621)
T TIGR01787 296 VWDTAFAIQALRESGDHRLPEFHPALVKAHEWLLLSQIPDNPPGDWKVYRHNLKPGGWAFSFLNCGYPDVDDTAVVALKA 375 (621)
T ss_pred HHHHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhCCCCCCCchhhhCCCCCCCcccCccCCCCCCCchhHHHHHHHH
Confidence 9999999999999995 34558999999999999999886679998766666679999999999999999999999886
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHH
Q 006042 398 LQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFM 477 (663)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~ 477 (663)
..+... .++..+++++++++||+++||+ ||||++|+.+++..|+|++||+|.|++.++|++++++|+++|++|.
T Consensus 376 ~l~~~~-----~~~~~~~~l~~a~~~Ll~~Qn~-dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~ 449 (621)
T TIGR01787 376 VLLLQE-----DEHVKRDRLRDAVNWILGMQSS-NGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALG 449 (621)
T ss_pred HHhhcC-----cccccHHHHHHHHHHHHHHcCC-CCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHH
Confidence 554321 1346789999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCC
Q 006042 478 LFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSD 557 (663)
Q Consensus 478 ~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 557 (663)
.++. +.++++++|+||++||++.|++||+|+++||++|+|+|++++.+|..+|....+++.++||++||+++|++
T Consensus 450 ~~~~-----r~~~~~~~i~rAl~~L~~~Q~~DGsw~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~ 524 (621)
T TIGR01787 450 AFGH-----RADEIRNVLERALEYLRREQRADGSWFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMP 524 (621)
T ss_pred HhcC-----ccHhHHHHHHHHHHHHHHhcCCCCCCcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCC
Confidence 8752 12245689999999999999999999999999999999999999999997643458999999999999999
Q ss_pred CCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccc-ccccc
Q 006042 558 DGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGV-FMRNC 636 (663)
Q Consensus 558 DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~-f~~~~ 636 (663)
||||++.+.+|.++.|.+ .+.|++++|||||+||..++..+ .++++||++||+++|++||+|+++.++|+ ||++|
T Consensus 525 DGGWge~~~s~~~~~y~~--~~~S~~s~Ta~AL~AL~~ag~~~--~~ai~rgv~~L~~~Q~~dG~w~~~~~~g~~~p~~~ 600 (621)
T TIGR01787 525 DGGWGEDCFSYEDPSYVG--SGGSTPSQTGWALMALIAAGEAD--SEAIERGVKYLLETQRPDGDWPQEYITGVGFPKNF 600 (621)
T ss_pred CCCCCcCCccccccccCC--CCCCCHHHHHHHHHHHHHcCccc--hHHHHHHHHHHHHhCCCCCCCCCccccCCCCcccc
Confidence 999999999999999976 35799999999999999998753 24799999999999999999999999999 66999
Q ss_pred ccccCCccchHHHHHHHHHHH
Q 006042 637 MLHYAEYRNIFPLRALAEYRK 657 (663)
Q Consensus 637 ~~~y~~y~~~~pl~AL~~y~~ 657 (663)
||+||+|+++|||||||||++
T Consensus 601 ~i~Y~~Y~~~fpl~ALg~y~~ 621 (621)
T TIGR01787 601 YLKYTNYRNIFPLWALGRYRQ 621 (621)
T ss_pred eecccccchhhHHHHHHHHhC
Confidence 999999999999999999974
No 8
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=100.00 E-value=1.4e-60 Score=513.21 Aligned_cols=510 Identities=28% Similarity=0.465 Sum_probs=414.7
Q ss_pred HHHhcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccccccccch
Q 006042 88 MRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMWCYCRLVY 167 (663)
Q Consensus 88 L~l~G~~~~~~~~~~~~~ar~~i~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~~~~r~~~ 167 (663)
||++|++..+ |+|.+|+.+|+.+||+.++++|||++||++|.|.|. ++++|+++|+||.-+|+|++++|||+|.++
T Consensus 1 ~~~~g~~~~~---p~~~~a~~~~~~~gg~~~~~~~~k~~la~~~~y~w~-~~~~p~~~~~lp~~~p~~~~~~~~~~r~~~ 76 (517)
T COG1657 1 LRPLGVPATD---PALLKARSFILWRGGISKSRIWTKCRLAVLGAYIWR-APSAPPWVMLLPNTLPVHFYQMSSWARSST 76 (517)
T ss_pred CCcccCCccc---HHHhccHhhhhhcCCccccchHHHHHHHHhcceeec-cCCCCchHhhCCCcccchHHHHHHHhhhcc
Confidence 4678877777 499999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccCCCCChHH
Q 006042 168 MPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLI 247 (663)
Q Consensus 168 ~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 247 (663)
+|+ +.|. .+++++.+ +...+.++|.+-....++..+.+..... ...++.++
T Consensus 77 ~p~-----------~~~~----~~~~~~~~------------~~~~~l~yp~~~~~~r~~~~~~~~~~~~-~~~~~~~~- 127 (517)
T COG1657 77 VPL-----------IAPA----SDPLLTEG------------VKNVLLLYPTSGDVERLLLLLDHYFKRG-FPAPVTSL- 127 (517)
T ss_pred ccc-----------cccc----cccccccc------------ccceeEEcCCcchHHHHHHHHHHHHhhc-cCccchhh-
Confidence 992 1121 13333322 1113455676533332222222222222 22333445
Q ss_pred HHHHHHHHHHHhhhhcCCCceeeecccchhhcccccc-ccCCCc-HHHHHHHHHHhhhheecCCCce-eecCCCCchHHH
Q 006042 248 RQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACW-VEDPNG-IAFKKHLNRIADYIWLGEDGMK-VQTFGSQTWDTA 324 (663)
Q Consensus 248 r~~a~~~~~~~i~~~~~~~~~~~~~~v~~~l~~l~~~-~~~p~~-~~~~~~~~~l~~~~~~~~~g~~-~~~~~s~vwdTa 324 (663)
+.+ +.+..++..+++ ++..+.++++.++++.... ....++ ..++++..+..+..++...++. .+.+++|+|||+
T Consensus 128 ~~~--~~a~l~~~e~Qn-~dg~w~g~v~aa~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~q~wD~~ 204 (517)
T COG1657 128 RVR--KEAELWKLERQN-DDGSWRGIVNAASNVVLSLVVLGLDSNEPFQRRELRAEDSELVKAVGRGLAWLLGSQVWDGG 204 (517)
T ss_pred hhh--hhhheeeeeecc-cccccccchhhhhHHHHHHHHhhhccchHhhhhhhhhhhhhhhcccccccccccccccccch
Confidence 554 334334444443 3344688999887774432 234444 5777777777777666655543 456699999999
Q ss_pred HHHHHHHHcCCCCchH-HHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCC
Q 006042 325 LGLQALMACNIADEVE-SVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLM 403 (663)
Q Consensus 325 l~~~AL~~ag~~~~~~-~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~ 403 (663)
++..++..+|..+. + +++.++..||..+|..+. ++|... ++..+|||+|+..++++||.|+|+.+++++....+
T Consensus 205 f~~~~~~~~g~~~~-~~~aiaka~~~L~~kq~~~~--~~~~~~-~~~~~g~W~f~~~~~~ypd~d~T~~~~~al~~~~~- 279 (517)
T COG1657 205 FIRRALLVAGLAET-PIPAIAKALMFLLDKQVLKY--ADWAVK-RKFSPGGWGFSNINTGYPDADDTAGVVRALIGVQS- 279 (517)
T ss_pred hhhhhhhhcCcccc-chHhHHhhhhhhHHHHHHHh--hccccc-cccCCCccceeecccCCCCchhhhHHHHHHHhhcc-
Confidence 99999999998765 3 789999999999999875 788876 88899999999999999999999999999987653
Q ss_pred CCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhC
Q 006042 404 PPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLY 483 (663)
Q Consensus 404 ~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~ 483 (663)
.+.+.++++|+..+||. .|||..|+..+.+.|++.+++++.+ .|.++++++||+.++.+|+.+....
T Consensus 280 ----------~~~~~~~l~~V~~~q~~-~g~~a~~e~~~~~a~~~~L~~~~~~--~~~~~s~adct~~~~~~l~a~~~yl 346 (517)
T COG1657 280 ----------LPNFELGLDWVLYMQNK-LGGLAVYEDRNLHAWLRLLPPAEVK--AMVDPSTADCTHRVVLALAALNAYL 346 (517)
T ss_pred ----------hhhHHhhhhHhhhcccc-cCceeeeccccccHHHhhCCHhhcc--ccccCCcccCCCccHHHHhhhhhcc
Confidence 34567799999999999 9999999999999999999988766 8999999999999999999887543
Q ss_pred CCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccC
Q 006042 484 PHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGE 563 (663)
Q Consensus 484 ~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~ 563 (663)
..++ .+.|+++++||++.|+++|+|++.|++|++|+|+.++.+|+..|....+...+++++.||.++|++||||++
T Consensus 347 ~~~~----~~~i~~a~e~LL~~Q~~~GsW~g~w~v~~iY~~s~a~~~l~~~g~~~~~~~~v~~~~~~l~~~~~~~~Gw~e 422 (517)
T COG1657 347 EAYD----GQPIERALEWLLSDQEPDGSWYGRWGVCYIYGTSGALSALALVGETDENEVLVRKLISWLVSKQMPDGGWGE 422 (517)
T ss_pred cccc----CCcccHHHhhhhhhccccCceeeEEEEEEEEehhhhhhhhhccCccccchHHHHHHHHHhhhccccCCCccc
Confidence 3211 246899999999999999999999999999999999999999998866788999999999999999999999
Q ss_pred CCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccccccccccCCc
Q 006042 564 SYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEY 643 (663)
Q Consensus 564 ~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y 643 (663)
.+.++..+.|... ..|...+|+||+.++..+.+.. .+.+++++++|.++|+++|.|.+.+.+|+|+.+|++.|+.|
T Consensus 423 ~~~~~~~~~~~~t--~~sl~~~~~wal~~~~~a~~~~--~~~i~~~~~~~~~~~~~~g~~~~~~~eg~~~~~~~~~~~~~ 498 (517)
T COG1657 423 AKEAISDPVYTGT--ESSLLVQTNWALIALLTALEPN--QEAIKPGINLLVSDQEPDGSWREAEREGGFNCNFAIGYPYY 498 (517)
T ss_pred ccccccccccccc--cchhhcchhHHHHHHHHhcccc--hhhhcccccccccCcCCCCccccceecccCCCCcceeeeeE
Confidence 9999988888752 5678889999999999988773 35699999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhC
Q 006042 644 RNIFPLRALAEYRKRV 659 (663)
Q Consensus 644 ~~~~pl~AL~~y~~~~ 659 (663)
..+||+.||++|...+
T Consensus 499 ~~~~p~~~lg~y~~~~ 514 (517)
T COG1657 499 LAYFPIIALGRYGGQY 514 (517)
T ss_pred EeecCchhhccccccc
Confidence 9999999999997654
No 9
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=100.00 E-value=2.6e-44 Score=386.58 Aligned_cols=347 Identities=50% Similarity=0.875 Sum_probs=285.2
Q ss_pred HHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCC
Q 006042 294 KKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKG 373 (663)
Q Consensus 294 ~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~G 373 (663)
.+++++|.+. +.+||.+.... +++|+|+++++||.++|..+++.+.++|+++||.+.|....+ ++|...+++...|
T Consensus 2 ~~~~~~L~~~--Q~~dG~W~~~~-~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~-~~~~~~~~~~~~G 77 (348)
T cd02889 2 RRALDFLLSL--QAPDGHWPGEY-SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQIRDNP-DDWKVKYRHLRKG 77 (348)
T ss_pred chHHHHHHHh--ccCCCCccccC-CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCC-CchhhcCCCCCCC
Confidence 5788888887 56788664332 899999999999999998555678999999999999965432 3456667778899
Q ss_pred cccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcc
Q 006042 374 AWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPV 453 (663)
Q Consensus 374 gW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~ 453 (663)
||+|+...+++|++++|++++++|..+...++. +..++.+.+.++++||+++|++ ||||..|.......+.+. +.
T Consensus 78 gw~y~~~~~~~~~~~~Ta~~l~al~~~~~~~~~--~~~~~~~~i~~a~~~L~~~Q~~-dG~f~~~~~~~~~~~~~~--~~ 152 (348)
T cd02889 78 GWAFSTANQGYPDSDDTAEALKALLRLQKKPPD--GKKVSRERLYDAVDWLLSMQNS-NGGFAAFEPDNTYKYLEL--IP 152 (348)
T ss_pred cCcccCcCCCCCCCCChHHHHHHHHHhhccCcc--cchhhHHHHHHHHHHHHHhccC-CCCEeeecCCccHHHHhc--Cc
Confidence 999998777889999999999999988753321 2346788999999999999999 999988776555445433 11
Q ss_pred cccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHH
Q 006042 454 EFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQV 533 (663)
Q Consensus 454 e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~ 533 (663)
+.+++...+++.+++|+++|.+|..++...+.++ ..+.+.++++++||.+.|++||+|.+.|+.+++|.|++++.||..
T Consensus 153 ~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~-~~~~~~i~~a~~~L~~~q~~dG~w~~~~~~~~~y~ta~a~~aL~~ 231 (348)
T cd02889 153 EVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHR-REIDPAIRRAVKYLEREQEPDGSWYGRWGVCFIYGTWFALEALAA 231 (348)
T ss_pred hhhcCCccCCCCcchHHHHHHHHHHhhhcCCchH-HHHHHHHHHHHHHHHHhCCCCCCccccCCCcchHHHHHHHHHHHH
Confidence 2245556677889999999999998876433222 246678999999999999999999999988899999999999999
Q ss_pred cCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q 006042 534 AGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLL 613 (663)
Q Consensus 534 ~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L 613 (663)
+|... ..+.++++++||+++|++||||++.+..+..+.|. ++..+++..|+|+|++|+.++.. +.+.++++++||
T Consensus 232 ~g~~~-~~~~~~~~~~~L~~~Q~~dG~w~~~~~~~~~~~~~--~~~~~~~~~Ta~al~aL~~~g~~--~~~~v~~a~~wL 306 (348)
T cd02889 232 AGEDE-NSPYVRKACDWLLSKQNPDGGWGESYESYEDPSYA--GGGRSTVVQTAWALLALMAAGEP--DSEAVKRGVKYL 306 (348)
T ss_pred cCCCc-CcHHHHHHHHHHHHccCCCCCcCCccccccccccc--CCCCCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Confidence 98763 57899999999999999999999876544333332 24578999999999999999875 235799999999
Q ss_pred HhcCccCCCCCCCccccccccccccccCCccchHHHHHHHHH
Q 006042 614 INSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEY 655 (663)
Q Consensus 614 ~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y 655 (663)
.++|++||+|..++.+|++++.|+++|++|+++|||+||++|
T Consensus 307 ~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (348)
T cd02889 307 LNTQQEDGDWPQEEITGVFFKNFYIRYHNYRNYFPLWALGRY 348 (348)
T ss_pred HHhcCCCCCcCCceeeeeecceeeeccCccchHhHHHHhhcC
Confidence 999999999999999999999999999999999999999986
No 10
>PLN03012 Camelliol C synthase
Probab=100.00 E-value=1.1e-41 Score=385.20 Aligned_cols=524 Identities=19% Similarity=0.197 Sum_probs=350.9
Q ss_pred HHHHHHHHHHHhccCCCCccccccCCCCceehhHHHHHHHHHhcCCC-CCCCchHHHHHHHHHHhc----CCC-----CC
Q 006042 49 EHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGP-NDGENNACARARKWIRDH----GGV-----TY 118 (663)
Q Consensus 49 ~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~t~~~y~aL~l~G~~~-~~~~~~~~~~ar~~i~~~----GG~-----~~ 118 (663)
+.++++++|+.+.|.+||.|.-.++|+. |.+.+-.++|+++|... .-+ +++.++..+||.++ ||+ ..
T Consensus 97 ~a~~ra~~~~~~lQ~~dGhW~~e~~g~~--fl~~~~Vi~~yi~g~~~~~~~-~~~~~ei~ryl~~~Qn~DGGWglh~eg~ 173 (759)
T PLN03012 97 NALRKGIHFFSALQASDGHWPAENAGPL--FFLPPLVFCLYITGHLDEIFT-QDHRKEILRYIYCHQKEDGGWGLHIEGH 173 (759)
T ss_pred HHHHHHHHHHHHhccCCCCcccccCCcc--chhHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHhccCCCCeecccCCC
Confidence 3578899999999999999997777665 99999999999999431 111 13889999999885 777 35
Q ss_pred CchhHH----HHHHHhCcccCCC-CCCCC---------CceeecCCCCCCCCCccccccccchhhHHHhhcCCCCccCCc
Q 006042 119 IPSWGK----NWLSILGIFEWSG-TNPMP---------PEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITP 184 (663)
Q Consensus 119 ~~~~~k----~~Lal~G~~~W~~-~~~lP---------~el~llP~~~p~~~~~~~~~~r~~~~pl~~l~~~r~~~~~~p 184 (663)
+.+|+. +.|.++|+.+-++ -+.|- =-..-.|.| .|+| |+++....|.+ ++|
T Consensus 174 s~~~~Tv~~YvaLRllG~~~d~~~~~~m~rAR~~Il~~GGa~~~p~w-----~K~w---------LA~lG~y~W~g-~np 238 (759)
T PLN03012 174 STMFCTTLNYICMRILGEGPDGGHDNACGRARDWILDHGGATYIPSW-----GKTW---------LSILGVFDWSG-SNP 238 (759)
T ss_pred CcchhHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHcCCcccCchH-----HHHH---------HHHcCccccCC-CCC
Confidence 677877 6999999976642 11221 011335666 7888 99999999996 788
Q ss_pred hhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHHhhh---
Q 006042 185 LIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHY--- 261 (663)
Q Consensus 185 ~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~a~~~~~~~i~~--- 261 (663)
++ .|||..|+. +++++.|.+|..+.+|-|+++++...+. ..++++ +..| |++.....++.|..
T Consensus 239 ~P----pElwLLP~~-~P~hp~~~~~~~R~vy~Pmsyly~~R~~---~~~~~~-----i~~l-r~ELy~~py~~i~w~~~ 304 (759)
T PLN03012 239 MP----PEFWILPSF-FPIHPAKMWCYCRLVYLPMSYLYGKRFV---GPISPL-----ILQL-REEIYLQPYAEINWMKA 304 (759)
T ss_pred CC----hhHHHccCc-CCccHHHHHHHHHHHHHHHHHHhcCCcc---ccCCch-----hhhh-HHHhCCCCccccChhhh
Confidence 88 789999876 7899999999888888888876644321 111221 2334 55555544444432
Q ss_pred hc---CCCceeeecccchhhcc-cccccc------CCCcHHHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHH
Q 006042 262 ED---HNSRYITIGCVEKPLCM-LACWVE------DPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALM 331 (663)
Q Consensus 262 ~~---~~~~~~~~~~v~~~l~~-l~~~~~------~p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~ 331 (663)
++ ..+.|...+.+.+.++. |....+ ....+..+++++++.+++. .+|......+..+| ..++.+|.
T Consensus 305 r~~~a~~D~y~p~~~~~~~~~~~l~~~~~~~l~~~~~~~~LR~~Al~~a~~~I~-~ed~~t~y~~i~pv---~~~l~ml~ 380 (759)
T PLN03012 305 RHLCAKEDAYCPHPLIQDLIWDCLYIFAEPFLACWPFNKLLREKALGLAMKHIH-YEDENSRYITIGCV---EKALCMLA 380 (759)
T ss_pred ccccccccccCCchHHHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH-hcCCCCCEeeHHHH---HHHHHHHH
Confidence 22 12334333333332211 110001 1122477889998888765 44444334444444 33444444
Q ss_pred HcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCC
Q 006042 332 ACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEK 411 (663)
Q Consensus 332 ~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~ 411 (663)
--+.+++ ++.++++++=|.+--.... .|- +.+. . -..+||||++++||.+.+- + +
T Consensus 381 ~~~~~p~-~~~~k~hl~ri~d~lw~~~-dGm----~~q~-----------~-gSqvWDTa~~~qAl~~agl-~-----~- 435 (759)
T PLN03012 381 CWVEDPN-GDHFKKHLLRISDYLWIAE-DGM----KMQS-----------F-GSQLWDSGFALQALLASNL-S-----N- 435 (759)
T ss_pred HhCCCCC-CHHHHHHHHHhhhcEEEeC-Cce----EEcC-----------C-CCcHHHHHHHHHHHHHcCC-C-----c-
Confidence 4444333 4555555544433322110 021 2111 1 1357999999999998642 1 1
Q ss_pred CCHHHHHHHHHHHHhhccccC--CCccc-cccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCc-c
Q 006042 412 MEPERLYDAVNFLLSLQDEKT--GGLAV-WERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHH-R 487 (663)
Q Consensus 412 ~~~~~i~~a~~wLl~~Qn~~D--Ggw~~-~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~-~ 487 (663)
...+.++||.+||++.|..+| |-|.. +.....++| .|++.-..++.+||||.+|+++..+....++. .
T Consensus 436 ~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW--------~Fs~~~~gyp~sD~TAe~Lka~lll~~~~~~~~~ 507 (759)
T PLN03012 436 EIPDVLRRGHDFIKNSQVGENPSGDFKNMYRHISKGAW--------TFSDRDHGWQASDCTAEGFKCCLLFSMIAPDIVG 507 (759)
T ss_pred cchHHHHHHHHHHHHHhccCCCCChhhhhCCCCCCCcc--------cccCCCCCCCCCCccHHHHHHHHHHHhccccccc
Confidence 356799999999999999722 55643 333444566 37766677899999999999866554331211 0
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCc--------------------ccCCCCcchh--HHHHHHHHHHHcCCCc------C
Q 006042 488 KKEIENFIVKAVHYIEDEQTADGSW--------------------YGNWGICFIY--GTCFALGGLQVAGKTY------N 539 (663)
Q Consensus 488 ~~~~~~~i~rav~~L~~~Q~~DGsw--------------------~g~wg~~~~Y--~T~~aL~aL~~~g~~~------~ 539 (663)
....++++.+|++||++.||+|||| ++.+.+.+.| +|+.+|.||..++... +
T Consensus 508 ~~~~~~~l~~av~wlL~mQn~dGGwaafe~~~~~~~le~lnp~E~F~d~mid~~y~dcTa~~l~aL~~f~~~~~~~r~~~ 587 (759)
T PLN03012 508 PKMDPEQLHDAVNILLSLQSKNGGMTAWEPAGAPEWLELLNPTEMFADIVIEHEYNECTSSAIQALILFKQLYPDHRTEE 587 (759)
T ss_pred ccccHHHHHHHHHHHHhccCCCCCEeeecCCcchHHHHhcChhhhhcCeecCCCcccHHHHHHHHHHHHhhhCcccchhh
Confidence 1123578999999999999999999 3334445555 6999999999876532 1
Q ss_pred ChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcc
Q 006042 540 NCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLE 619 (663)
Q Consensus 540 ~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~ 619 (663)
.++.|+||++||++.|++||||.+++..|++ +.|++||.||..+|....+.+.|+||++||+++|++
T Consensus 588 i~~~i~rAv~~L~~~Q~~DGsW~G~Wgv~y~-------------YgT~~aL~aL~a~g~~~~~~~~Irrav~fLls~Q~~ 654 (759)
T PLN03012 588 INAFIKKAAEYIENIQMLDGSWYGNWGICFT-------------YGTWFALAGLAAAGKTFNDCEAIRKGVHFLLAAQKD 654 (759)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCcccccccCC-------------cHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhcCC
Confidence 3678999999999999999999999877644 389999999999988644446899999999999999
Q ss_pred CCCCCCCcccccccccccccc-----CCccchHHHHHHHHHH
Q 006042 620 NGDFPQQEIMGVFMRNCMLHY-----AEYRNIFPLRALAEYR 656 (663)
Q Consensus 620 dG~w~~~~~~g~f~~~~~~~y-----~~y~~~~pl~AL~~y~ 656 (663)
||||.+.. +.++..-|+.. +.|-+.|.|+||-...
T Consensus 655 DGGWGEs~--~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag 694 (759)
T PLN03012 655 NGGWGESY--LSCPKKIYIAQEGEISNLVQTAWALMGLIHAG 694 (759)
T ss_pred CCCcCCCC--CCCCCccccCCCCCCCcHHHHHHHHHHHHHcC
Confidence 99999864 33434444442 3478899999998653
No 11
>PLN02993 lupeol synthase
Probab=100.00 E-value=1.8e-39 Score=368.10 Aligned_cols=521 Identities=18% Similarity=0.219 Sum_probs=346.8
Q ss_pred HHHHHHHHHHHhccCCCCccccccCCCCceehhHHHHHHHHHhc---CCCCCCCchHHHHHHHHHHhc----CCC-----
Q 006042 49 EHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLG---LGPNDGENNACARARKWIRDH----GGV----- 116 (663)
Q Consensus 49 ~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~t~~~y~aL~l~G---~~~~~~~~~~~~~ar~~i~~~----GG~----- 116 (663)
+.++++++++.+.|.+||.|....+|+. |.+.+-.++|+++| ...++ ++.++..+||.++ ||+
T Consensus 97 ~a~~ra~~~l~~lQ~~DGhW~~e~~g~~--fl~~~~Vi~~~~~g~~~~~~~~---~~~~ei~ryl~~~Q~~DGGWgl~~e 171 (763)
T PLN02993 97 NALRRGVSFFSALQASDGHWPGEITGPL--FFLPPLVFCLYITGHLEEVFDA---EHRKEMLRHIYCHQNEDGGWGLHIE 171 (763)
T ss_pred HHHHHHHHHHHHhccCCCCcccccCCcc--hhhHHHHHHHHHhcCCCCCCCH---HHHHHHHHHHHHhccCCCCcccccC
Confidence 3578899999999999999997777555 99999999999999 23333 3889999999885 877
Q ss_pred CCCchhHH----HHHHHhCcccCCC-CCCCC--C-------ceeecCCCCCCCCCccccccccchhhHHHhhcCCCCccC
Q 006042 117 TYIPSWGK----NWLSILGIFEWSG-TNPMP--P-------EFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPI 182 (663)
Q Consensus 117 ~~~~~~~k----~~Lal~G~~~W~~-~~~lP--~-------el~llP~~~p~~~~~~~~~~r~~~~pl~~l~~~r~~~~~ 182 (663)
..+.+|+. +.|.++|+-+-.+ -|.|- - -..-.|.| .|+| |+++....|.+ +
T Consensus 172 g~s~~~~Tv~~Y~aLRllG~~~d~~~~p~m~rAR~~Il~~GGa~~~~~w-----tK~w---------LAllG~y~W~g-~ 236 (763)
T PLN02993 172 SKSVMFCTVLNYICLRMLGEGPNGGRENACKRARQWILDHGGVTYIPSW-----GKFW---------LSILGIYDWSG-T 236 (763)
T ss_pred CCccchHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHcCCcccCchH-----HHHH---------HHHcCCcccCC-C
Confidence 34567777 6899999976622 12221 0 01235666 7888 99999999996 7
Q ss_pred CchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHHhhhh
Q 006042 183 TPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHYE 262 (663)
Q Consensus 183 ~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~a~~~~~~~i~~~ 262 (663)
+|++ .|||..|+. +++++.|.+|..+.+|-|+++++...+. ...+++ +..| |++.....++.|...
T Consensus 237 ~p~P----pElwLLP~~-~P~hp~~~~~~~R~v~vPmsyl~~~r~~---~~~~~~-----i~~l-r~ELy~~py~~i~~~ 302 (763)
T PLN02993 237 NPMP----PEIWLLPSF-LPIHLGKTLCYTRMVYMPMSYLYGKRFV---GPITPL-----IMLL-REELHLQPYEEINWN 302 (763)
T ss_pred CCCC----hhHHHccCc-CCccHHHhHHhhhhhHHhHHHHhcCCcc---cCCCch-----hhhh-hHHhccCCchhcChH
Confidence 8888 789999876 7999999999989999998876544311 111111 2334 665555555555322
Q ss_pred ---c---CCCceeeecccchhhcc-ccccccC-----C-CcHHHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHH
Q 006042 263 ---D---HNSRYITIGCVEKPLCM-LACWVED-----P-NGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQA 329 (663)
Q Consensus 263 ---~---~~~~~~~~~~v~~~l~~-l~~~~~~-----p-~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~A 329 (663)
. ..+.|...+.+...++- +....+. | +.+..+++++++.+.+ ..+|+..-..+..+|+..-.++.+
T Consensus 303 ~~r~~~~~~d~y~p~~~~~~~~~~~l~~~~~~~l~~~p~~~~lR~~Al~~a~~~i-~~ed~~t~y~~i~~vn~~l~ml~~ 381 (763)
T PLN02993 303 KARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFLTRWPLNKLVREKALQVAMKHI-HYEDENSHYITIGCVEKVLCMLAC 381 (763)
T ss_pred hhcCCccccCCCCCchHHHHHHHHHHHHHHhhcccCCcchHHHHHHHHHHHHHHH-HhcCCCCCcccHHHHHHHHHHHHH
Confidence 1 12333332222222211 1111111 1 1246788999888854 456665433333344333224444
Q ss_pred HHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccC
Q 006042 330 LMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVG 409 (663)
Q Consensus 330 L~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~ 409 (663)
+.+ +++ ++.++++++=|.+--.... .| ++.+. .+ .-++|||++++||.+.+ ++
T Consensus 382 ~~~---~p~-~~~~~~~l~ri~d~lw~~e-dg----m~~q~-----------~g-SqvWDTa~a~qAl~~ag-l~----- 434 (763)
T PLN02993 382 WIE---NPN-GDHFKKHLARIPDYMWVAE-DG----MKMQS-----------FG-SQLWDTGFAIQALLASD-LS----- 434 (763)
T ss_pred hCC---CCC-CHHHHHHHHHhhhcEEEeC-Cc----eEEcC-----------CC-CchHHHHHHHHHHHHcC-CC-----
Confidence 443 332 3455555544433322110 02 12111 22 23699999999999865 21
Q ss_pred CCCCHHHHHHHHHHHHhhcccc--CCCccc-cccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCc
Q 006042 410 EKMEPERLYDAVNFLLSLQDEK--TGGLAV-WERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHH 486 (663)
Q Consensus 410 ~~~~~~~i~~a~~wLl~~Qn~~--DGgw~~-~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~ 486 (663)
+ ...+.++||.+||++.|..+ .|-|.. +...+.++| .|++.-..++.+||||.+|+|+..+....++.
T Consensus 435 ~-~~~~~l~kA~~~L~~~Qv~~~~~gdw~~~~r~~~~GgW--------~Fs~~~~gyp~sDdTAe~lka~l~l~~~~~~~ 505 (763)
T PLN02993 435 D-ETDDVLRRGHNYIKKSQVRENPSGDFKSMYRHISKGAW--------TLSDRDHGWQVSDCTAEALKCCMLLSMMPADV 505 (763)
T ss_pred c-ccCHHHHHHHHHHHHHhccCCCCCchHhhCCCCCCCcC--------cCccCCCCCCcCCchHHHHHHHHHHhhCcccc
Confidence 1 35689999999999999952 266653 334444566 37766677899999999999866665432211
Q ss_pred c-hHHHHHHHHHHHHHHHHhcccCCCccc-------CCC---------------CcchhHHHHHHHHHHHcCCCc-----
Q 006042 487 R-KKEIENFIVKAVHYIEDEQTADGSWYG-------NWG---------------ICFIYGTCFALGGLQVAGKTY----- 538 (663)
Q Consensus 487 ~-~~~~~~~i~rav~~L~~~Q~~DGsw~g-------~wg---------------~~~~Y~T~~aL~aL~~~g~~~----- 538 (663)
. ....++++.+|++||++.||.||||.. .|. .++.++|+.+|.+|..++...
T Consensus 506 ~~~~~~~~~l~~av~wlL~mQn~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~ 585 (763)
T PLN02993 506 VGQKIDPEQLYDSVNLLLSLQSENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRT 585 (763)
T ss_pred ccccchHHHHHHHHHHHHhhccCCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhh
Confidence 0 122347999999999999999999952 111 246679999999999886421
Q ss_pred -CChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Q 006042 539 -NNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQ 617 (663)
Q Consensus 539 -~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q 617 (663)
+.++.|+||++||++.|++||||.+++..| .++.|++||.||..+|....+.+.|+||++||+++|
T Consensus 586 ~ei~~~i~rAv~yL~~~Q~~DGSW~G~Wgv~-------------y~YgT~~aL~aL~a~G~~~~~~~~IrrAv~fLls~Q 652 (763)
T PLN02993 586 KEIIKSIEKAVQFIESKQTPDGSWYGNWGIC-------------FIYATWFALGGLAAAGKTYNDCLAMRKGVHFLLTIQ 652 (763)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCcccccccc-------------cCcHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Confidence 125789999999999999999998876543 345999999999999886444358999999999999
Q ss_pred ccCCCCCCCccccccccccccc-----cCCccchHHHHHHHHH
Q 006042 618 LENGDFPQQEIMGVFMRNCMLH-----YAEYRNIFPLRALAEY 655 (663)
Q Consensus 618 ~~dG~w~~~~~~g~f~~~~~~~-----y~~y~~~~pl~AL~~y 655 (663)
++||+|.+.. ......-|.. =+.|-+.|.|+||...
T Consensus 653 ~~DGGWGEs~--~S~~~~~y~~~~~~~St~~qTAwAllaL~~a 693 (763)
T PLN02993 653 RDDGGWGESY--LSCPEQRYIPLEGNRSNLVQTAWAMMGLIHA 693 (763)
T ss_pred CCCCCcCcCc--CcCCCcccccCCCCCCchhhHHHHHHHHHHc
Confidence 9999998763 2222222332 2348899999999865
No 12
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=100.00 E-value=9.9e-37 Score=346.77 Aligned_cols=479 Identities=20% Similarity=0.229 Sum_probs=306.7
Q ss_pred hHHHHHHHHhcCCCCCccCCC--CCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCcee
Q 006042 2 KRAAHYFSAIQASDGHWPAEN--AGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMF 79 (663)
Q Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~--~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~ 79 (663)
++.++||+++|++||.|.--. .|+++.|++.+++|+++|.. .+++.++++++||+++ || -...++|
T Consensus 65 ~~~~~~l~~~Q~~DGgWg~~~~~~~~~~~Tv~~Y~aLrl~G~~---~~~~~m~rAr~~I~~~----GG-----~~~~~~~ 132 (635)
T TIGR01507 65 EKIRNYLLHEQREDGTWALYPGGPGDLSTTVEAYVALKYIGMS---RDEPPMQKALRFIQSQ----GG-----IESSRVF 132 (635)
T ss_pred HHHHHHHHHhccCCCCccCccCCCcchhHHHHHHHHHHHhCCC---CCcHHHHHHHHHHHHc----CC-----cccccHH
Confidence 567899999999999999444 47889999999999999973 3578899999999995 87 3355668
Q ss_pred hhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcC---CCCCCchhHHH-HHHHhCcccCCCCCCCC-----CceeecCC
Q 006042 80 GTVFSYLCMRLLGLGPNDGENNACARARKWIRDHG---GVTYIPSWGKN-WLSILGIFEWSGTNPMP-----PEFWILPS 150 (663)
Q Consensus 80 ~t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~G---G~~~~~~~~k~-~Lal~G~~~W~~~~~lP-----~el~llP~ 150 (663)
|.+ -|.++|+.+++... ....+-+++... .+.+..+|+|. ++-|.=++.-.-+.++| +||+..|.
T Consensus 133 tk~----~LAl~G~~~W~~~~--~~P~El~llP~~~p~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~~~~~~~eL~~~~~ 206 (635)
T TIGR01507 133 TRM----WLALVGEYPWRGVP--MVPPEIMLLPKRFPFNIYEFSSWARATVVPLSIVCSRKPVFPLPERARVPELYETDV 206 (635)
T ss_pred HHH----HHHHcCCcCcccCC--CCCHHHHhCCCcCCccHHHHHHHHHHHHHHHHHHhcCCCccCCCcccChHhhcCCCh
Confidence 776 49999999998632 355566665543 22344467773 33333334344445555 45554442
Q ss_pred -----CCCCCCCccccccccchhhH-HHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCC-CCCCCchhHH
Q 006042 151 -----FVPLHPSKMWCYCRLVYMPV-SYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKE-DLYYPHPFVQ 223 (663)
Q Consensus 151 -----~~p~~~~~~~~~~r~~~~pl-~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~-d~~~p~~~~~ 223 (663)
.++ +.. ..|. ++.-+ .++ +++.. +.+. .+|+.-. ...++|...|++...+ -.+.|.. .
T Consensus 207 ~~~~~~~~--~~~-~~~~--~~~~~~~~l--~~~~~-l~~~--~lr~~A~---~~a~~~i~~~~e~~g~~~~i~p~~--~ 271 (635)
T TIGR01507 207 PKPRRRGA--KGG-TGWG--IFDALDRAL--HGYEK-LSVH--PFRRAAE---IRALDWLLERQAGDGSWGGIQPAM--F 271 (635)
T ss_pred HHhcccCC--ccC-CcHH--HHHHHHHHH--HHHHh-cCCc--HHHHHHH---HHHHHHHHHHHcCCCceeecchHH--H
Confidence 011 000 0010 01000 111 11110 1111 1222211 1335677777653321 1223321 1
Q ss_pred HHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHHhhhhcCCCcee--eecccchh-h--ccccccccCCCcHHHHHHHH
Q 006042 224 ELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHYEDHNSRYI--TIGCVEKP-L--CMLACWVEDPNGIAFKKHLN 298 (663)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~l~r~~a~~~~~~~i~~~~~~~~~~--~~~~v~~~-l--~~l~~~~~~p~~~~~~~~~~ 298 (663)
..+ +...... ..|-+.. ++++++++.+++... +.+.++ +.+|++++ + .+|...+..+++|.++|+.+
T Consensus 272 ~~l---~~l~~~g---~~~~~~~-~~~~l~~l~~~~~~~-~~g~~~~~~~s~vWDTa~ai~AL~~ag~~~~~p~l~kA~~ 343 (635)
T TIGR01507 272 NAL---IALKILG---MTQHDAF-IKLGWEGIDLYGVEL-DDSWMFQACVSPVWDTALAVLALREAGLPADHDALVKAGE 343 (635)
T ss_pred HHH---HHHHHcC---CCCCCHH-HHHHHHHHHHheEec-CCceEecCCCCcHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 222 1111111 1122446 888999987776532 222332 34466653 2 33433455567899999999
Q ss_pred HHhhhheecCC-----------Cce-ee--cC-CCCchHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHhhcccCCCCC
Q 006042 299 RIADYIWLGED-----------GMK-VQ--TF-GSQTWDTALGLQALMACNIAD--EVESVLGKGHDYLKKAQIRDNPVG 361 (663)
Q Consensus 299 ~l~~~~~~~~~-----------g~~-~~--~~-~s~vwdTal~~~AL~~ag~~~--~~~~~l~ka~~wL~~~Q~~~~~~G 361 (663)
+|++..+..++ |.+ ++ .+ .+++|||+.++.||.+.+.++ ..++.++||++||+++|+++ |
T Consensus 344 ~L~~~Qi~~~~~w~~~~~~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~d---G 420 (635)
T TIGR01507 344 WLLDKQITVPGDWAVKRPNLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSN---G 420 (635)
T ss_pred HHHhhcccCCCCccccCCCCCCCccCCCCCCCCCCCchhHHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCC---C
Confidence 99998764332 211 11 33 479999999999999876432 24579999999999999987 6
Q ss_pred CccccCCCC---CCCcccCccCC--CCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCc-
Q 006042 362 DYKGNFRHF---SKGAWTFSDQD--HGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGL- 435 (663)
Q Consensus 362 ~~~~~~~~~---~~GgW~fs~~~--~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw- 435 (663)
+|..+-... .-+--+|++.+ .-+|++|+|+.++++|...+. ...+++++||++||+++|++ ||||
T Consensus 421 gw~af~~~~~~~~l~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g~--------~~~~~~i~rav~~L~~~Q~~-dG~W~ 491 (635)
T TIGR01507 421 GWGAFDVDNTSDLLNHIPFCDFGAVTDPPTADVTARVLECLGSFGY--------DDAWPVIERAVEYLKREQEP-DGSWF 491 (635)
T ss_pred CEecccCCcchhHHhcCCccccccccCCCCccHHHHHHHHHHHhCC--------CchhHHHHHHHHHHHHccCC-CCCCc
Confidence 664211000 00111343211 125788999999999987642 12368999999999999999 9999
Q ss_pred cccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccC
Q 006042 436 AVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGN 515 (663)
Q Consensus 436 ~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~ 515 (663)
+.+. + .+.+.|+.+|++|...+... .++.|+||++||++.|++||||+..
T Consensus 492 g~wg---------------------~--~~~Y~T~~al~aL~~~g~~~-------~~~~i~rAv~wL~~~Q~~DGGWge~ 541 (635)
T TIGR01507 492 GRWG---------------------V--NYLYGTGAVLSALKAVGIDT-------REPYIQKALAWLESHQNPDGGWGED 541 (635)
T ss_pred cCCC---------------------C--ccccHHHHHHHHHHHcCCCc-------ccHHHHHHHHHHHHhcCCCCCCCCC
Confidence 3221 1 25678999999999765421 2468999999999999999999732
Q ss_pred -----------CCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCC
Q 006042 516 -----------WGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESY 565 (663)
Q Consensus 516 -----------wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~ 565 (663)
.|.++.+.|++||.||..+|.. ..+.|+||++||+++|++||||++.+
T Consensus 542 ~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~--~~~~I~rav~~L~~~Q~~dG~W~e~~ 600 (635)
T TIGR01507 542 CRSYEDPAYAGKGASTASQTAWALIALIAAGRA--ESEAARRGVQYLVETQRPDGGWDEPY 600 (635)
T ss_pred CcccccccccCCCCCcHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHHhcCCCCCCCCcc
Confidence 1356778999999999999875 46899999999999999999999874
No 13
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=100.00 E-value=2.4e-37 Score=352.18 Aligned_cols=512 Identities=17% Similarity=0.166 Sum_probs=323.3
Q ss_pred HHHHhccCCCCccccccCCCCceehhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhc----CCC-----CCCchhHH--
Q 006042 56 RYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDH----GGV-----TYIPSWGK-- 124 (663)
Q Consensus 56 ~~l~~~Q~~dGgW~~~~~~~~~~~~t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~----GG~-----~~~~~~~k-- 124 (663)
.||+++|++||.|.-.. .++++.|.+..++|+++|...+++ ...+..+||+++ ||+ ...++++.
T Consensus 2 ~~l~~~Q~~dG~W~~e~--~~~~~~~a~~i~~~~~~~~~~~~~---~~~~~~~yl~~~Q~~dGgWgl~~~~~~~~~~T~~ 76 (634)
T TIGR03463 2 ARLTETQQPAGCWEGEM--IWCPVVTAQVAITRHVVGRPPEPE---QRAGIIRHFENSQLADGAWGLHPEAPGQVFTTVL 76 (634)
T ss_pred hhHHhcccCCCcccccc--CCccccCHHHHHHHHHHcCCCCHH---HHHHHHHHHHHhccCCCCccCCCCCCcchHHHHH
Confidence 57999999999998444 455699999999999999765542 677899999985 777 33467766
Q ss_pred --HHHHHhCcccCCCCCCC----------CCceeecCCCCCCCCCccccccccchhhHHHhhcCCCCccCCchhHhhHhh
Q 006042 125 --NWLSILGIFEWSGTNPM----------PPEFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQLREE 192 (663)
Q Consensus 125 --~~Lal~G~~~W~~~~~l----------P~el~llP~~~p~~~~~~~~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~~E 192 (663)
+.|.++|+-+-+ +.| |=.+.-+|.| .|+| |+++....|.+ ++|++ .|
T Consensus 77 ~Y~aLrl~G~~~~~--~~~~rAr~~i~~~~GG~~~~~~~-----~k~~---------La~~g~~~W~~-~~~~P----~E 135 (634)
T TIGR03463 77 NYVALRLLGVGKED--AGLARARQWLHAQPGGVLGSPTW-----GKFW---------LALLGLYGRGG-LQPVP----PE 135 (634)
T ss_pred HHHHHHHcCCCCCC--HHHHHHHHHHHhCCCCcccCchH-----HHHH---------HHHcCcCCccc-CCCCC----HH
Confidence 689999986543 222 2223333443 5555 77777788884 77887 78
Q ss_pred hccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHHhhh---hcC---CC
Q 006042 193 LHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHY---EDH---NS 266 (663)
Q Consensus 193 L~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~a~~~~~~~i~~---~~~---~~ 266 (663)
|+..|.+ ++++..|.+|..+.+|.|++++++..+. ..+++. +..+ |++-.....+.|.. ++. .+
T Consensus 136 l~lLP~~-~P~~~~~~~~~~R~v~~p~~~l~~~r~~---~~~~~~-----~~~l-~~EL~~~~~~~~~~~~~~~~~~~~d 205 (634)
T TIGR03463 136 LWLLPES-LPFHPSRFYCHTRMVYLPMSWLYGRRAR---APLTPL-----RAAL-RQELYDGGYGQVDFVAARERVAPTD 205 (634)
T ss_pred HHHcccc-CCcCHHHHHHHhHHHHHhHHHHhcCCcc---cCCCcc-----hhhh-hHHhccCCccccccccccCcccccc
Confidence 8988865 6788888876666666666554332210 001110 1223 44333333333321 111 11
Q ss_pred ceeeecccchhhcc-ccccccCCCcHHHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHH
Q 006042 267 RYITIGCVEKPLCM-LACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGK 345 (663)
Q Consensus 267 ~~~~~~~v~~~l~~-l~~~~~~p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~k 345 (663)
.|...+.+...++- |......+-.|..+++++++.+++....++.. ..+..+ ...++.+|.-.|.+++ ++.++|
T Consensus 206 ~~~p~~~~~~~~~~~l~~~~~~~~~~lr~~A~~~~~~~i~~~~~~~~-~~~i~p---~~~~~~~l~~~g~~~~-~p~~~k 280 (634)
T TIGR03463 206 VFTPRTFWLRAANQVMYGYERLAGKQLRARALDFCLEQIRAEDEATH-YICISP---VNGVLNMLAWFAVNPD-GPEVAA 280 (634)
T ss_pred ccCCcHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhcCCC-eEehHH---HHHHHHHHHHhCCCCC-CHHHHH
Confidence 11111111122221 12222222235677888888887653322222 222222 4455566655565554 689999
Q ss_pred HHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHH
Q 006042 346 GHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLL 425 (663)
Q Consensus 346 a~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl 425 (663)
+++.|.+-...++ .|+. + .+ +...| ++||+++++||.+.+.. ++..++.++||++||+
T Consensus 281 ~l~~l~~~~~~~~-~~g~---~---------~q--~~~s~-~WDTala~~AL~e~g~~------~~~~~~~l~kA~~wL~ 338 (634)
T TIGR03463 281 HLEGLEDYRYEDD-DRGL---R---------YN--GYNSS-EWDTAFAVQALAATPET------AGRHRRMLERAARFLE 338 (634)
T ss_pred HHHHHHhhEEEcC-CCCE---E---------Ee--eCCCC-chhHHHHHHHHHHcCCC------chhhhHHHHHHHHHHH
Confidence 9999988765431 1110 1 11 11123 49999999999875421 1134589999999999
Q ss_pred hhcccc-CCCcc-ccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcc-hHHHHHHHHHHHHHH
Q 006042 426 SLQDEK-TGGLA-VWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHR-KKEIENFIVKAVHYI 502 (663)
Q Consensus 426 ~~Qn~~-DGgw~-~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~-~~~~~~~i~rav~~L 502 (663)
++|..+ .|.|. .+...+.++| .|++....++.+|||+.+|+||..+... +... ....++++++|++||
T Consensus 339 ~~Q~~~~~gd~~~~~~~~~~GGW--------~f~~~~~~~pdsD~Ta~~L~Al~~~~~~-~~~~~~~~~~~~l~~av~~L 409 (634)
T TIGR03463 339 ANQMLEDTAEPQRFFRDPAKGGW--------CFSDGDHGWPVSDCTAEALSASLVLEPL-GLNPEERVPQARLQDAVEFI 409 (634)
T ss_pred HhcCCcCCCCchhcCCCCCCCcc--------ccccCCCCCCccccHHHHHHHHHHHhhc-CCcccccccHHHHHHHHHHH
Confidence 999621 24443 2222233444 2444445668899999999999876532 1100 012246899999999
Q ss_pred HHhcccCCCccc-------CC---------------CCcchhHHHHHHHHHHHcCCCcC------ChHHHHHHHHHHHhh
Q 006042 503 EDEQTADGSWYG-------NW---------------GICFIYGTCFALGGLQVAGKTYN------NCLAIRRAVDFLLNA 554 (663)
Q Consensus 503 ~~~Q~~DGsw~g-------~w---------------g~~~~Y~T~~aL~aL~~~g~~~~------~~~~i~ra~~~Ll~~ 554 (663)
++.||+||+|.. .| +.+++++|+.+|.+|..++.... ..++++||++||++.
T Consensus 410 l~~Qn~dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 410 LSRQNEDGGFGTYERQRGPRVLELLNPSEMFSTCMTDVSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred HHhcCCCCCEeccCCCCcHHHHhcCChHHhhcccccCCCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 999999999972 22 23477799999999998865421 146799999999999
Q ss_pred cCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCcccccccc
Q 006042 555 QSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMR 634 (663)
Q Consensus 555 Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~ 634 (663)
|++||||...+.. .....|++|+.||..+|....+ +.++|+++||+++|++||+|.+... ....
T Consensus 490 Q~~dGsW~g~Wg~-------------~~~Y~T~~al~aL~~~G~~~~~-~~i~rA~~~Ll~~Q~~DGgWg~~~~--s~~~ 553 (634)
T TIGR03463 490 QREDGSFPGSWGV-------------CFTYGTFHGVMGLRAAGASPDD-MALQRAAAWLRSYQRADGGWGEVYE--SCLQ 553 (634)
T ss_pred cCCCCCccccCCC-------------CCcHHHHHHHHHHHHcCCCcCc-HHHHHHHHHHHHccCCCCCccCccC--cccc
Confidence 9999999766532 2234799999999999875433 5799999999999999999986431 1111
Q ss_pred cccc---ccCCccchHHHHHHHHH
Q 006042 635 NCML---HYAEYRNIFPLRALAEY 655 (663)
Q Consensus 635 ~~~~---~y~~y~~~~pl~AL~~y 655 (663)
.-|+ .-+.|.+.+.|+||...
T Consensus 554 ~~y~~~~~S~~~~TA~Al~aL~~~ 577 (634)
T TIGR03463 554 ARYVEGKQSQAVMTSWALLALAEA 577 (634)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHc
Confidence 1122 23456677899999764
No 14
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=100.00 E-value=1.3e-35 Score=340.91 Aligned_cols=514 Identities=22% Similarity=0.277 Sum_probs=333.3
Q ss_pred HHHHHHHHhccCCCCccccccCCCCceehhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhc----CCCC-----CCchh
Q 006042 52 REILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDH----GGVT-----YIPSW 122 (663)
Q Consensus 52 ~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~----GG~~-----~~~~~ 122 (663)
+++.++|++.|++||.|....+++ +|.|.+..++|+++|...++ +...+..+||+++ ||+. ...++
T Consensus 2 ~~~~~~l~~~q~~dG~W~~e~~~~--~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~l~~~q~~dGgw~~~~~~~~~~~ 76 (634)
T cd02892 2 RRALEFLLSLQAPDGHWPGELEGP--LFITAEYILLLYILGIPIDP---EHRKEIARYLRNHQNPDGGWGLHHEGPSTMF 76 (634)
T ss_pred hHHHHHHHHhccCCCceecccCCc--chhhHHHHHHHHHhcCCCCH---HHHHHHHHHHHHhccCCCCccCCCCCCcchH
Confidence 578899999999999998555554 69999999999999977554 3789999999985 7773 34567
Q ss_pred HH----HHHHHhCcccCCCCCCCC-C-c-------eeecCCCCCCCCCccccccccchhhHHHhhcCCCCccCCchhHhh
Q 006042 123 GK----NWLSILGIFEWSGTNPMP-P-E-------FWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQL 189 (663)
Q Consensus 123 ~k----~~Lal~G~~~W~~~~~lP-~-e-------l~llP~~~p~~~~~~~~~~r~~~~pl~~l~~~r~~~~~~p~~~~l 189 (663)
+. +.|.++|+.+-+ +.|- . + +.-+|.| .|+| |+++....|.+ ++|++
T Consensus 77 ~T~~~Y~aLrl~G~~~~~--~~m~~Ar~~i~~~GG~~~~~~~-----~k~~---------La~~G~~~W~~-~~~~P--- 136 (634)
T cd02892 77 GTVLNYVALRLLGVSPDD--PHMVKARNWILSHGGAARIPVW-----GKIW---------LALLGVYPWEG-VPPLP--- 136 (634)
T ss_pred HHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHcCCcccccHH-----HHHH---------HHHcCcccccc-CCCCC---
Confidence 66 579999996554 3332 0 1 1224444 6777 88899999985 78887
Q ss_pred HhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHHhhhhcC----C
Q 006042 190 REELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIHYEDH----N 265 (663)
Q Consensus 190 ~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~a~~~~~~~i~~~~~----~ 265 (663)
.||+..|.. ++++..|.+|..+.+|-|++++.+..+ .-+ ...++..+ |++-.....+.|..... .
T Consensus 137 -~El~llP~~-~p~~~~~~~~~~R~~~~p~~~l~~~r~------~~~--~~~~~~~~-~~el~~~~~~~~~~~~~~~~~~ 205 (634)
T cd02892 137 -PELWLLPSW-LPFHPYKFWCWARTVYVPMSYLYGKRP------VAP--ITPLVLSL-RDELYVEPYEKINWYKHRNDLY 205 (634)
T ss_pred -HhHHhcCCc-CCccHHHHHHHHHHHHHhHHHHhcCCc------ccC--CCCccccc-hHHhCCCCcccccccccccccc
Confidence 788988865 778888877666666666654433221 000 01111223 33332222233321110 1
Q ss_pred Cceeeecccchhhcccccccc-CCCcHHHHHHHHHHhhhheec--CCCceeecCCCCchHHHHHHHHHHHcCCCCchHHH
Q 006042 266 SRYITIGCVEKPLCMLACWVE-DPNGIAFKKHLNRIADYIWLG--EDGMKVQTFGSQTWDTALGLQALMACNIADEVESV 342 (663)
Q Consensus 266 ~~~~~~~~v~~~l~~l~~~~~-~p~~~~~~~~~~~l~~~~~~~--~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~ 342 (663)
+.+.....+...+..+....+ -+..+..++++++..+++... ++|.... .+ -.++++++||...|. ++ ++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~a~~~~~~~i~~~q~~~g~~~~---~~-~~~~l~~lal~~~g~-~~-~~~ 279 (634)
T cd02892 206 DYRPPWQRLFDALDRLLHWYEPLPPKPLRRKALRKAYEWILYRDENTGYLGI---IP-PPKANNMLALWVLGY-PD-SPA 279 (634)
T ss_pred cCCCChHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCCceee---ee-hHHHHHHHHHHHcCC-CC-CHH
Confidence 111111111111221111111 233456677777777766532 2333221 12 367999999999987 33 578
Q ss_pred HHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHH
Q 006042 343 LGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVN 422 (663)
Q Consensus 343 l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~ 422 (663)
++++++.|.+-.... ..|. +..++ ++ ..++|||++++||.+++.. +...+.+++|++
T Consensus 280 ~~~~l~~l~~~~~~~-~~g~------------~~~~~--~~-s~~wDTala~~AL~~ag~~-------~~~~~~l~ka~~ 336 (634)
T cd02892 280 FKRHLERIDDFLWLG-PEGM------------KMCQT--NG-SQVWDTALAVQALLEAGLA-------PEFDPALKKALD 336 (634)
T ss_pred HHHHHHHHHhcEEEe-cCCc------------EEEcC--CC-CchHHHHHHHHHHHHcCCC-------ccchHHHHHHHH
Confidence 888888887765321 0132 22211 12 2479999999999886521 135679999999
Q ss_pred HHHhhcc--ccCCCccccccCC-chhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHH
Q 006042 423 FLLSLQD--EKTGGLAVWERAG-ASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAV 499 (663)
Q Consensus 423 wLl~~Qn--~~DGgw~~~~~~~-~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav 499 (663)
||+++|+ . +|.|..+..+. .++| .|++....+|.+++|+.+|++|..++.. +..+.....++|++|+
T Consensus 337 wL~~~Q~~~~-~gdw~~~~~~~~~GGW--------~fs~~~~~~pd~d~Ta~~l~AL~~~~~~-~~~~~~~~~~~i~~Av 406 (634)
T cd02892 337 WLLESQILDN-PGDWKVKYRHLRKGGW--------AFSTANQGYPDSDDTAEALKALLRLQEL-PPFGEKVSRERLYDAV 406 (634)
T ss_pred HHHHHHcCCC-CCchhhhCCCCCCCCC--------CCCCCCCCCCCcCchHHHHHHHHHhhcc-CCcchhhHHHHHHHHH
Confidence 9999995 5 78886655443 4555 2555455668899999999999988754 2112234567999999
Q ss_pred HHHHHhcccCCCcccC-------C----------C-----CcchhHHHHHHHHHHHcCCCcCC-----hHHHHHHHHHHH
Q 006042 500 HYIEDEQTADGSWYGN-------W----------G-----ICFIYGTCFALGGLQVAGKTYNN-----CLAIRRAVDFLL 552 (663)
Q Consensus 500 ~~L~~~Q~~DGsw~g~-------w----------g-----~~~~Y~T~~aL~aL~~~g~~~~~-----~~~i~ra~~~Ll 552 (663)
+||++.|++||+|... | | .++..+|+.+|.+|..++..... ++.++||++||+
T Consensus 407 ~wLl~~Qn~dGgf~~y~~~~~~~~~~~~~p~e~~g~~~~d~~~~~~Ta~~l~aL~~~~~~~~~~r~~i~~~i~rAv~~L~ 486 (634)
T cd02892 407 DWLLGMQNSNGGFAAFEPDNTYHWLENLNPFEDFGDIMIDPPYVECTGSVLEALGLFGKLYPGHRREIDPAIRRAVKYLL 486 (634)
T ss_pred HHHHhccCCCCCEeeecCCCchhhHhhcCchhhhcccccCCCCcchHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999631 0 0 12334799999999998875421 268999999999
Q ss_pred hhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCcccccc
Q 006042 553 NAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVF 632 (663)
Q Consensus 553 ~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f 632 (663)
++|++||||.+.+. .+....|++||.||..+|......+.++++++||+++|++||+|.+... .+
T Consensus 487 ~~Q~~DGsW~g~wg-------------~~~~Y~T~~al~AL~~~G~~~~~~~~i~~a~~~L~s~Q~~DGgWge~~~--s~ 551 (634)
T cd02892 487 REQEPDGSWYGRWG-------------VCYIYGTWFALEALAAAGEDYENSPYIRKACDFLLSKQNPDGGWGESYL--SY 551 (634)
T ss_pred HccCCCCCccccCC-------------CccHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHhcCCCCCCCCCccc--cc
Confidence 99999999976542 2445689999999999887512235799999999999999999986421 11
Q ss_pred ccccccc---cCCccchHHHHHHHHH
Q 006042 633 MRNCMLH---YAEYRNIFPLRALAEY 655 (663)
Q Consensus 633 ~~~~~~~---y~~y~~~~pl~AL~~y 655 (663)
....|.. -+.+.+.+.|+||-..
T Consensus 552 ~~~~~~~~~~s~~~~TA~AllaLl~~ 577 (634)
T cd02892 552 EDKSYAGGGRSTVVQTAWALLALMAA 577 (634)
T ss_pred cCcccCCCCCCcHHHHHHHHHHHHHc
Confidence 1111111 1234456777777654
No 15
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=100.00 E-value=2.1e-33 Score=319.62 Aligned_cols=502 Identities=19% Similarity=0.201 Sum_probs=321.5
Q ss_pred HHHHHHHHHhccCCCCccccccCCCCceehhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhc----CCCC-----CCch
Q 006042 51 RREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDH----GGVT-----YIPS 121 (663)
Q Consensus 51 ~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~----GG~~-----~~~~ 121 (663)
++++.++|++.|.+||.|....+++ ++.|.+..++|+++|...+ + ..++..+||+++ ||+. ..++
T Consensus 2 ~~~~~~~l~~~Q~~dG~W~~~~~~~--~~~~a~~i~~~~~~g~~~~-~---~~~~~~~~l~~~Q~~DGgW~~~~~~~~~~ 75 (621)
T TIGR01787 2 ARRAVEFLLSLQAPDGYWWGELEGP--LTLLAEYVLLCHIADTPLP-G---YREKIVRYLRHHQNEDGGWGLHIGGKSTV 75 (621)
T ss_pred HHHHHHHHHHhccCCCceecccCCc--cccCHHHHHHHHHhcCCCh-H---HHHHHHHHHHHhcCCCCCeeCCcCCCcch
Confidence 4778999999999999998555444 6999999999999995543 2 789999999985 7773 3456
Q ss_pred hHH----HHHHHhCcccCCCCCCCC-C-c-------eeecCCCCCCCCCccccccccchhhHHHhhcCCCCccCCchhHh
Q 006042 122 WGK----NWLSILGIFEWSGTNPMP-P-E-------FWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQ 188 (663)
Q Consensus 122 ~~k----~~Lal~G~~~W~~~~~lP-~-e-------l~llP~~~p~~~~~~~~~~r~~~~pl~~l~~~r~~~~~~p~~~~ 188 (663)
++. +.|.++|+-+-+ +.|- . + +.-+|.| .|+| |+++....|.. ++|++
T Consensus 76 ~~Tv~aY~aLrl~G~~~~~--~~m~~Ar~~i~~~GG~~~~~~~-----~k~~---------La~~G~~~W~~-~~~~P-- 136 (621)
T TIGR01787 76 FGTVLAYVALKILGMSPDD--PAMVRARNFILKQGGAVASPVF-----TKFW---------LALLGVYPWEG-VPPLP-- 136 (621)
T ss_pred HHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHcCCcccCchH-----HHHH---------HHHcCcccccc-CCCCC--
Confidence 666 578999996543 2232 0 1 1223443 6776 88888889985 77887
Q ss_pred hHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHHhh-hh---cC
Q 006042 189 LREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIH-YE---DH 264 (663)
Q Consensus 189 l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~a~~~~~~~i~-~~---~~ 264 (663)
.||+..|.. +++.+.|.||....+|.|+++.+... ...|... |++..... +.+. .+ ..
T Consensus 137 --~El~llP~~-~p~~~~~~w~~~~~v~l~~~~~~~~~------------~~~~~~~--~~el~~~~-~~~~~~~~~~~~ 198 (621)
T TIGR01787 137 --PEIMLLPKW-LPIHPSKSWCRCRMVYLPMSYCYGER------------LSAPIDP--REELYVED-DSIRAQRNNVAK 198 (621)
T ss_pred --HhHHhcCcc-cCcCcchhhhhhhhHHHHHHHHcCcc------------ccCCCCc--chhhcCCC-cchhhccCCCCc
Confidence 788988875 66777777766555444433221111 1112111 22222111 1111 00 01
Q ss_pred CCceeeecccchhhccccccccCC--CcHHHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHH
Q 006042 265 NSRYITIGCVEKPLCMLACWVEDP--NGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESV 342 (663)
Q Consensus 265 ~~~~~~~~~v~~~l~~l~~~~~~p--~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~ 342 (663)
.+.|..+..+.++++.+......| ...+++++++++.+.+ ..+| +-.++ ..+++++||...|.++ ++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~--~~~g-----~~~~i-~~~~~~~al~~~g~~d--~p~ 268 (621)
T TIGR01787 199 EDLYTPHSWLLRALYGLLNLFYHPFLRKALRKRALQWLYEHI--AADG-----SIGPI-SKAMAMLALWFLDGPN--SPA 268 (621)
T ss_pred ccccccHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHh--ccCC-----CchhH-hHHHHHHHHHHcCCCC--CHH
Confidence 222332333334444433221222 4457888998888774 2333 22222 3456888999888763 689
Q ss_pred HHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHH
Q 006042 343 LGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVN 422 (663)
Q Consensus 343 l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~ 422 (663)
++|+++.|.+--..+. .|.+. + +.+ ..++||+++++||.+.+... .+...+.++||++
T Consensus 269 ~~~~l~~l~~~~~~~~-dg~~~----q-----------~~~-s~vWDTalai~AL~~ag~~~-----~~~~~~~i~ka~~ 326 (621)
T TIGR01787 269 FQKHLQRIDDYLWLQL-DGMKM----Q-----------GTG-SQVWDTAFAIQALRESGDHR-----LPEFHPALVKAHE 326 (621)
T ss_pred HHHHHHHHhhcEEEeC-CccEE----e-----------cCC-CcHHHHHHHHHHHHHcCCCC-----ccccCHHHHHHHH
Confidence 9999999987643321 13221 1 111 24799999999998765200 1134579999999
Q ss_pred HHHhhccccC---CCccccccCCc-hhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHH
Q 006042 423 FLLSLQDEKT---GGLAVWERAGA-SLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKA 498 (663)
Q Consensus 423 wLl~~Qn~~D---Ggw~~~~~~~~-~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~ra 498 (663)
||++.|.+ + |.|..+..+.. ++| .|+..-..+|.++.|+.++.++..+... + .....++++++
T Consensus 327 wL~~~Q~~-~~~~g~~~~~~~~~~pGgW--------~fs~~~~~~PdvdDta~~~la~~l~~~~-~---~~~~~~~l~~a 393 (621)
T TIGR01787 327 WLLLSQIP-DNPPGDWKVYRHNLKPGGW--------AFSFLNCGYPDVDDTAVVALKAVLLLQE-D---EHVKRDRLRDA 393 (621)
T ss_pred HHHHHhCC-CCCCCchhhhCCCCCCCcc--------cCccCCCCCCCchhHHHHHHHHHHhhcC-c---ccccHHHHHHH
Confidence 99999998 6 78876644332 455 3554434555677777777665444321 1 11245789999
Q ss_pred HHHHHHhcccCCCcccC--------------------CCCcchh--HHHHHHHHHHHcCCCc-CChHHHHHHHHHHHhhc
Q 006042 499 VHYIEDEQTADGSWYGN--------------------WGICFIY--GTCFALGGLQVAGKTY-NNCLAIRRAVDFLLNAQ 555 (663)
Q Consensus 499 v~~L~~~Q~~DGsw~g~--------------------wg~~~~Y--~T~~aL~aL~~~g~~~-~~~~~i~ra~~~Ll~~Q 555 (663)
++||++.|++||+|... ..+.+.| +|+.+|+||..++... ...+.|+||++||++.|
T Consensus 394 ~~~Ll~~Qn~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~~r~~~~~~~i~rAl~~L~~~Q 473 (621)
T TIGR01787 394 VNWILGMQSSNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFGHRADEIRNVLERALEYLRREQ 473 (621)
T ss_pred HHHHHHHcCCCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhcCccHhHHHHHHHHHHHHHHhc
Confidence 99999999999999630 0122333 8999999999987421 13579999999999999
Q ss_pred CCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccccc
Q 006042 556 SDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRN 635 (663)
Q Consensus 556 ~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~ 635 (663)
++||+|.+.+.. +....|++++.+|..+|+...+.+.++|+++||+++|++||+|.+... .+...
T Consensus 474 ~~DGsw~g~wg~-------------~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge~~~--s~~~~ 538 (621)
T TIGR01787 474 RADGSWFGRWGV-------------NYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGEDCF--SYEDP 538 (621)
T ss_pred CCCCCCcccCCC-------------CCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCcCCc--ccccc
Confidence 999999866432 223579999999999987533335799999999999999999986531 11111
Q ss_pred ccc---ccCCccchHHHHHHHHH
Q 006042 636 CML---HYAEYRNIFPLRALAEY 655 (663)
Q Consensus 636 ~~~---~y~~y~~~~pl~AL~~y 655 (663)
.|. .=+...+.|.|+||-..
T Consensus 539 ~y~~~~~S~~s~Ta~AL~AL~~a 561 (621)
T TIGR01787 539 SYVGSGGSTPSQTGWALMALIAA 561 (621)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHc
Confidence 111 11234567888888653
No 16
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]
Probab=99.96 E-value=1.4e-29 Score=274.69 Aligned_cols=522 Identities=20% Similarity=0.221 Sum_probs=353.0
Q ss_pred HHHHHHHHHHhccCCCCccccccCCCCceehhHHHHHHHHHhcCC---CCCCCchHHHHHHHHHHhc----CCC-----C
Q 006042 50 HRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLG---PNDGENNACARARKWIRDH----GGV-----T 117 (663)
Q Consensus 50 ~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~t~~~y~aL~l~G~~---~~~~~~~~~~~ar~~i~~~----GG~-----~ 117 (663)
.+++.++|+...|.+||.|+-.+.||. |-..-..++|.++|.- -+.+ +.++..++|..| ||+ .
T Consensus 98 ~lrrgi~f~~~LQa~DGhwp~~~~GPl--f~~~~~v~~~yitg~l~~~~~~e---hr~Eliry~ynhqn~DGGWGlhve~ 172 (760)
T KOG0497|consen 98 ALRRGLLFFSALQAPDGHWPGEYSGPL--FFLPPLVICLYITGHLEKIFTAE---HRKEILRYIYNHQNEDGGWGLHVEG 172 (760)
T ss_pred hhhhhHHHHHHhcCCCCCCCCCCCCCh--hhhhhhhheeeecccCCcccCcc---cHHHHHHHHHhccCCCCCccccccC
Confidence 467778899999999999997777777 8888888999999632 2222 788899999886 766 4
Q ss_pred CCchhHH----HHHHHhCcccCCCC-CCCC---Cce------eecCCCCCCCCCccccccccchhhHHHhhcCCCCccCC
Q 006042 118 YIPSWGK----NWLSILGIFEWSGT-NPMP---PEF------WILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPIT 183 (663)
Q Consensus 118 ~~~~~~k----~~Lal~G~~~W~~~-~~lP---~el------~llP~~~p~~~~~~~~~~r~~~~pl~~l~~~r~~~~~~ 183 (663)
.+.+|+. +.|.++|+-+-.+. ..+- ..+ ...|.| +|+| +|+|....|++ .+
T Consensus 173 ~S~mF~TvlNYi~LRilG~~~~~~~~~a~~~aR~wild~GGa~~~p~w-----gK~w---------LsvLgvydWsG-~n 237 (760)
T KOG0497|consen 173 KSTMFCTVLNYICLRILGEGPDHGDESACKRARKWILDHGGATYIPSW-----GKFW---------LSVLGVYDWSG-VN 237 (760)
T ss_pred ceeEEEeeehheeheeeccCCCCCchhHHHHHHHHHHHcCCccccchh-----hHHH---------HHhcccccCcC-CC
Confidence 5566665 68999999876543 1121 111 446777 8888 99999999998 67
Q ss_pred chhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccCCCCChHHHHHHHHHHHHHhh---
Q 006042 184 PLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLIRQKALKETMKFIH--- 260 (663)
Q Consensus 184 p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~a~~~~~~~i~--- 260 (663)
|.+ .|||..|+. .++++.+.||..+|.|-|+|+++...| ....+|+. -.| |++.....++.|.
T Consensus 238 p~p----PElwllP~~-~P~h~g~~w~~~R~vy~pmsYlygkrf---v~~~tpli-----~~L-reELy~~py~~Inw~~ 303 (760)
T KOG0497|consen 238 PLP----PELWLLPSF-LPIHPGTLWCHCRDVYMPMSYLYGKRF---VAPPTPLI-----LQL-REELYPEPYDKINWSK 303 (760)
T ss_pred CCC----chhhccccc-cCCCCCceEEEecceecccccceeeee---eccCChHH-----HHH-hhhhcCCChhhhhHHH
Confidence 887 789999876 678899999999999999998764432 12233332 235 7777766666665
Q ss_pred hhcC---CCceeeecccchhhccccc-cccC-----CCcHHHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHH
Q 006042 261 YEDH---NSRYITIGCVEKPLCMLAC-WVED-----PNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALM 331 (663)
Q Consensus 261 ~~~~---~~~~~~~~~v~~~l~~l~~-~~~~-----p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~ 331 (663)
.|+. .+.|..++-+.+.++.+.. +.+. |-.-..+++++...+.+ ..+|...-..|+.+|-.+--++.+..
T Consensus 304 ~Rn~~akeDlyyphs~i~D~l~~~l~~~~e~ll~rWp~~~~R~~a~~~~me~i-hyede~t~yi~ig~v~k~~~ml~cwv 382 (760)
T KOG0497|consen 304 ARNLCAKEDLYYPHSLLQDLLWALLHKFSEPLLNRWPLKLIREKALRTAMELI-HYEDENTRYITIGPVNKAFNMLACWV 382 (760)
T ss_pred HhhccccccccCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHh-hhhhcccCceecccchhhhcceeeee
Confidence 3332 3345566656666665433 2222 22112345566555554 35555544444444433222333333
Q ss_pred HcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCC
Q 006042 332 ACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEK 411 (663)
Q Consensus 332 ~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~ 411 (663)
+.-..+-++.++.|.-+||..... |- . =|+|+ .-.+||+++|+++++..- ++
T Consensus 383 edp~s~~Fkkhl~Ri~d~lw~ged-----Gm----k------mq~~~------sQ~Wdt~falqalla~~~-------~~ 434 (760)
T KOG0497|consen 383 EDPNSDAFKKHLARIPDFLWIAED-----GM----K------MQGFN------SQLWDTAFALQALLAAGL-------VD 434 (760)
T ss_pred eccchHHHHHHhccccCeEEEcCC-----Cc----e------Eeecc------hhHHHHHHHHHHHHhcCC-------cH
Confidence 331111234455555555544321 21 1 12332 246999999999987642 12
Q ss_pred CCHHHHHHHHHHHHhhccccC-CCcc--ccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcch
Q 006042 412 MEPERLYDAVNFLLSLQDEKT-GGLA--VWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRK 488 (663)
Q Consensus 412 ~~~~~i~~a~~wLl~~Qn~~D-Ggw~--~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~ 488 (663)
.....++++-+||.+.|..++ +||. .|.....++| .|++....++.+|||+.++.+...++....+...
T Consensus 435 E~~~~l~k~~~yl~~sQv~~n~~gd~~~~yR~~~kG~w--------tfS~~d~gw~vsDctaEal~~~lll~~~~~~~vg 506 (760)
T KOG0497|consen 435 EFRSTLVKAYDFLKKSQVRENPPGDFKKMYRHISKGGW--------TFSDRDQGWPVSDCTAEALKCCLLLSSMPSEIVG 506 (760)
T ss_pred HHHHHHHHHHHHhhhcccccCCCcchhhheeccccccc--------cccccccceeeccccHHHHHHHHHhcCCChhhcc
Confidence 356899999999999998632 3443 4666666666 5888888889999999999888777543221111
Q ss_pred HH-HHHHHHHHHHHHHHhcccCCCccc--------------------CCCCcchh--HHHHHHHHHHHcCCCc------C
Q 006042 489 KE-IENFIVKAVHYIEDEQTADGSWYG--------------------NWGICFIY--GTCFALGGLQVAGKTY------N 539 (663)
Q Consensus 489 ~~-~~~~i~rav~~L~~~Q~~DGsw~g--------------------~wg~~~~Y--~T~~aL~aL~~~g~~~------~ 539 (663)
+. ..+++-.+++.|+..|..+|++.. +..+.+.| ||..++.||..+.... +
T Consensus 507 ~~~~~erL~dav~~Ll~lq~~~Gg~~~~e~~r~~~wLE~lnp~E~f~~~~ve~~yvEcT~s~I~aL~~F~k~~p~~r~~E 586 (760)
T KOG0497|consen 507 EKIDVERLYDAVDVLLYLQSENGGFAAYEPARGYEWLELLNPAEVFGDIMVEYEYVECTSSAIQALVYFHKLFPGHRKKE 586 (760)
T ss_pred CCCCHHHHHHHHHHHHhhhhccCccccccccchHHHHHhcCchhcccceeeeecccccHHHHHHHHHhhcccCccHHHHH
Confidence 11 135788999999999999998841 11123334 8999999999886543 2
Q ss_pred ChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcc
Q 006042 540 NCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLE 619 (663)
Q Consensus 540 ~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~ 619 (663)
....|.+|++||.+.|.+||+|..++..|++ ..|-+|+-+|.++|+...+.++++||++||++.|++
T Consensus 587 i~~~i~~av~~ie~~Q~~DGSWyGsWgvCFt-------------Y~t~Fa~~gl~aaGkty~nc~~irka~~Fll~~Q~~ 653 (760)
T KOG0497|consen 587 IEKSIEKAVEFIEKLQLPDGSWYGSWGVCFT-------------YGTWFALRGLAAAGKTYENCEAIRKACDFLLSKQNP 653 (760)
T ss_pred HHHHHHHHHHHHHHcCCCCCcccchhhHHHH-------------HHHHHhcchhhhcchhhhccHHHHHHHHHHHhhhcc
Confidence 4678999999999999999999999988765 489999999999998755567899999999999999
Q ss_pred CCCCCCCccccccccccccccC-----CccchHHHHHHHHHHH
Q 006042 620 NGDFPQQEIMGVFMRNCMLHYA-----EYRNIFPLRALAEYRK 657 (663)
Q Consensus 620 dG~w~~~~~~g~f~~~~~~~y~-----~y~~~~pl~AL~~y~~ 657 (663)
+|+|.+...+ -|..-||... .-.+.+.+|||....+
T Consensus 654 ~GGWgEs~ls--cp~~~Yi~~~gn~s~vv~T~wAlm~Li~~~q 694 (760)
T KOG0497|consen 654 DGGWGESYLS--CPEKRYIPLEGNKSNVVQTAWALMALIMAGQ 694 (760)
T ss_pred cCCCcccccc--CccccccccccccccchhHHHHHHHHHhcCC
Confidence 9999875311 1222244433 2334678899887644
No 17
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.95 E-value=3.4e-26 Score=237.91 Aligned_cols=294 Identities=32% Similarity=0.416 Sum_probs=228.4
Q ss_pred HHHHHHHhhhheecCCCceeec-CCCCchHHHHHHHHHHHcCCC----CchHHHHHHHHHHHHhhcccCCCCCCccccCC
Q 006042 294 KKHLNRIADYIWLGEDGMKVQT-FGSQTWDTALGLQALMACNIA----DEVESVLGKGHDYLKKAQIRDNPVGDYKGNFR 368 (663)
Q Consensus 294 ~~~~~~l~~~~~~~~~g~~~~~-~~s~vwdTal~~~AL~~ag~~----~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~ 368 (663)
.+++++|.++ ..++|..... |.+++|.|+++++++...+.. .+....++++++||.+.|..+ |+|
T Consensus 2 ~~~~~~L~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~~d---G~~----- 71 (300)
T cd00688 2 EKHLKYLLRY--PYGDGHWYQSLCGEQTWSTAWPLLALLLLLAATGIRDKADENIEKGIQRLLSYQLSD---GGF----- 71 (300)
T ss_pred hhHHHHHHHc--cccCCCccccCCcCcHHHHHHHHHHHHHhCCcccccccchHHHHHHHHHHHhccCCC---CCc-----
Confidence 5778888887 3455544333 688999999999999988752 234688999999999999754 444
Q ss_pred CCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhh
Q 006042 369 HFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLE 448 (663)
Q Consensus 369 ~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~ 448 (663)
++... ...++++.|++++++|..++... ....+.++++++||.++|++ ||||..+......
T Consensus 72 -------~~~~~-~~~~~~~~T~~~~~~l~~~~~~~------~~~~~~~~~~~~~l~~~q~~-dG~~~~~~~~~~~---- 132 (300)
T cd00688 72 -------SGWGG-NDYPSLWLTAYALKALLLAGDYI------AVDRIDLARALNWLLSLQNE-DGGFREDGPGNHR---- 132 (300)
T ss_pred -------cCCCC-CCCcchHhHHHHHHHHHHcCCcc------ccCHHHHHHHHHHHHHccCC-CCCeeeecCCCCc----
Confidence 33211 11678999999999999876421 25678899999999999999 9999765432110
Q ss_pred hcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHH
Q 006042 449 WLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFAL 528 (663)
Q Consensus 449 ~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL 528 (663)
...+.+.+.+|+.++.+|..++.... ...++++++||.++|++||+| ..++..++|.|++++
T Consensus 133 ----------~~~~~~~~~~t~~al~aL~~~~~~~~-------~~~~~~~~~~l~~~q~~~g~~-~~~~~~~~~~t~~~~ 194 (300)
T cd00688 133 ----------IGGDESDVRLTAYALIALALLGKLDP-------DPLIEKALDYLLSCQNYDGGF-GPGGESHGYGTACAA 194 (300)
T ss_pred ----------ccCCCCcccHHHHHHHHHHHcCCCCC-------cHHHHHHHHHHHHHhcCCCCc-CCCccccHHHHHHHH
Confidence 11234578899999999998875321 357999999999999999999 777888999999999
Q ss_pred HHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHH
Q 006042 529 GGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHR 608 (663)
Q Consensus 529 ~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r 608 (663)
.+|..+|.. ..+.++++++||+++|+.||||+..... +...+++..|.+++.+|...+... +.+.+++
T Consensus 195 ~aL~~~~~~--~~~~~~~~~~~L~~~q~~~g~~~~~~~~---------~~~~~~~~~~~~~~~aL~~~~~~~-~~~~~~~ 262 (300)
T cd00688 195 AALALLGDL--DSPDAKKALRWLLSRQRPDGGWGEGRDR---------TNKLSDSCYTEWAAYALLALGKLG-DLEDAEK 262 (300)
T ss_pred HHHHHcCCc--chHHHHHHHHHHHHhcCCCCCcCccccC---------CCCcCchHHHHHHHHHHHHHhhhc-CcccHHH
Confidence 999999874 4688999999999999999999876420 134577889999999998876531 2236899
Q ss_pred HHHHHHhcCccCCCCCCCccccccccccccccCCccchHHHHHHHHH
Q 006042 609 GVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEY 655 (663)
Q Consensus 609 ~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y 655 (663)
+++||+++|.++|+|..... ..++.|.++|.|+||+.|
T Consensus 263 ~~~~L~~~q~~~G~w~~~~~---------~~~~~~~t~~al~aL~~~ 300 (300)
T cd00688 263 LVKWLLSQQNEDGGFSSKPG---------KSYDTQHTVFALLALSLY 300 (300)
T ss_pred HHHHHHhccCCCCCcCcCCC---------CCCcchhhHHHHHHHhcC
Confidence 99999999999999986532 456778899999999864
No 18
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.93 E-value=6e-24 Score=223.12 Aligned_cols=269 Identities=21% Similarity=0.185 Sum_probs=195.8
Q ss_pred CCchHHHHHHHHHHHcCCC----C----chHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccc
Q 006042 318 SQTWDTALGLQALMACNIA----D----EVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDC 389 (663)
Q Consensus 318 s~vwdTal~~~AL~~ag~~----~----~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~ 389 (663)
+..+-+.++...|...+.- . +....|+++++.+...|..| |+|. .|+ +..++++.
T Consensus 21 ~~~~p~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~r~l~~q~~d---Gsf~---------~w~-----~~~~s~wl 83 (297)
T cd02896 21 IKLAPTVYALRYLDTTNQWEKLGPERRDEALKYIRQGYQRQLSYRKPD---GSYA---------AWK-----NRPSSTWL 83 (297)
T ss_pred HHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHhccCCC---CCcc---------CCC-----CCCcchhh
Confidence 4556677777888776531 1 23566888888888888866 5553 221 11357899
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcH
Q 006042 390 TAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECT 469 (663)
Q Consensus 390 Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~T 469 (663)
||+|+++|..+++. + .++++.++++++||+++|++ ||+|.....-... +..+....+++.++.|
T Consensus 84 TA~v~~~l~~a~~~-----~-~v~~~~l~~a~~wL~~~Q~~-dG~f~e~~~~~~~---------~m~gg~~~~~~~~~lT 147 (297)
T cd02896 84 TAFVVKVFSLARKY-----I-PVDQNVICGSVNWLISNQKP-DGSFQEPSPVIHR---------EMTGGVEGSEGDVSLT 147 (297)
T ss_pred HHHHHHHHHHHHHc-----C-CCCHHHHHHHHHHHHhcCCC-CCeeCCCCCccCh---------hccCCccccCCCccch
Confidence 99999999987642 2 36889999999999999999 9999753211000 0011111123678899
Q ss_pred HHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHH
Q 006042 470 ASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVD 549 (663)
Q Consensus 470 a~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~ 549 (663)
|+|+.+|...+...+.. ..++.+.|+||++||.++|++ .+++|+++.+..||+.+|.+ ..+++.+
T Consensus 148 A~vl~aL~~~~~~~~~~-~~~~~~~i~rA~~yL~~~~~~---------~~~~Y~~Al~ayALal~~~~-----~~~~a~~ 212 (297)
T cd02896 148 AFVLIALQEARSICPPE-VQNLDQSIRKAISYLENQLPN---------LQRPYALAITAYALALADSP-----LSHAANR 212 (297)
T ss_pred HHHHHHHHhhhcccccc-chhhHHHHHHHHHHHHHhccc---------CCChHHHHHHHHHHHHcCCh-----hhHHHHH
Confidence 99999999887542211 123457899999999999864 56889999999999998753 6789999
Q ss_pred HHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccc
Q 006042 550 FLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIM 629 (663)
Q Consensus 550 ~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~ 629 (663)
+|++.|+.||||++.+.+ .++.+.+..+...+++.|||||++|+..+.. +.+.++++||.++|+.+|+|...+
T Consensus 213 ~L~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~vE~TAYALLall~~~~~----~~a~~iv~WL~~qr~~~Ggf~sTQ-- 285 (297)
T cd02896 213 KLLSLAKRDGNGWYWWTI-DSPYWPVPGPSAITVETTAYALLALLKLGDI----EYANPIARWLTEQRNYGGGFGSTQ-- 285 (297)
T ss_pred HHHHHhhhCCCcceeccC-cCccCCCCCCchhhhHHHHHHHHHHHhcCCc----hhHHHHHHHHHhcCCCCCCeehHH--
Confidence 999999999999977654 2222322111234789999999999998743 358899999999999999998764
Q ss_pred cccccccccccCCccchHHHHHHHHH
Q 006042 630 GVFMRNCMLHYAEYRNIFPLRALAEY 655 (663)
Q Consensus 630 g~f~~~~~~~y~~y~~~~pl~AL~~y 655 (663)
+++..|.||++|
T Consensus 286 --------------dTvval~AL~~y 297 (297)
T cd02896 286 --------------DTVVALQALAEY 297 (297)
T ss_pred --------------HHHHHHHHHhcC
Confidence 678999999987
No 19
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.92 E-value=3.1e-23 Score=217.66 Aligned_cols=264 Identities=22% Similarity=0.180 Sum_probs=188.8
Q ss_pred CCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHH-------hhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccc
Q 006042 317 GSQTWDTALGLQALMACNIADEVESVLGKGHDYLK-------KAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDC 389 (663)
Q Consensus 317 ~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~-------~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~ 389 (663)
.|..+-...+...|.+.+..+ ....+++.+||. +.|..| |+|.. |+ .....++++.
T Consensus 20 ~~~~~p~~~~~~yl~~~~~~~--~~~~~~~~~~l~~g~~~~~~~q~~d---Gsf~~---------w~---~~~~~~~~wl 82 (292)
T cd02897 20 MVNFAPNIYVLDYLKATGQLT--PEIESKALGFLRTGYQRQLTYKHSD---GSYSA---------FG---ESDKSGSTWL 82 (292)
T ss_pred HHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHhccCCC---CCeec---------cc---CCCCCcchhh
Confidence 356667777888888877432 233455555555 567655 55532 11 0112357789
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccc--cccccC
Q 006042 390 TAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIV--EHTYVE 467 (663)
Q Consensus 390 Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~--d~~~~~ 467 (663)
||+|+++|..+.. +..++++.++++++||+++|++ ||||..++... ...|. +.+.++
T Consensus 83 Ta~v~~~L~~a~~------~~~v~~~~i~ra~~wL~~~Q~~-dG~f~~~~~~~--------------~~~~~~~~~~~~~ 141 (292)
T cd02897 83 TAFVLKSFAQARP------FIYIDENVLQQALTWLSSHQKS-NGCFREVGRVF--------------HKAMQGGVDDEVA 141 (292)
T ss_pred HHHHHHHHHHHhc------cCCCCHHHHHHHHHHHHHhcCC-CCCCCCCCccc--------------ChhhcCCCCCCcc
Confidence 9999999998763 1236789999999999999999 99998654321 11111 235678
Q ss_pred cHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHH
Q 006042 468 CTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRA 547 (663)
Q Consensus 468 ~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra 547 (663)
+|++|+.+|...+.. . .++.|+||++||.+.+.+ ++++|+++.++.||..+|.. ....+.+.
T Consensus 142 ~TA~vl~aL~~~g~~--~-----~~~~i~~a~~yL~~~~~~---------~~~~y~~al~a~AL~~~~~~--~~~~~~~~ 203 (292)
T cd02897 142 LTAYVLIALLEAGLP--S-----ERPVVEKALSCLEAALDS---------ISDPYTLALAAYALTLAGSE--KRPEALKK 203 (292)
T ss_pred hHHHHHHHHHhcCCc--c-----ccHHHHHHHHHHHHhccc---------CCCHHHHHHHHHHHHHcCCc--cHHHHHHH
Confidence 999999999987643 1 246899999999998865 56889999999999999843 23444455
Q ss_pred HHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCc
Q 006042 548 VDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQE 627 (663)
Q Consensus 548 ~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~ 627 (663)
+.++...++.+|+|++++.+.....|.+ .+..++++.|||||++|+.++.. +.+.+.++++||.++|+++|+|...+
T Consensus 204 l~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~ve~TAyaLlall~~~~~--~~~~~~~~v~WL~~~q~~~Ggf~sTQ 280 (292)
T cd02897 204 LDELAISEDGTKHWSRPPPSEEGPSYYW-QAPSAEVEMTAYALLALLSAGGE--DLAEALPIVKWLAKQRNSLGGFSSTQ 280 (292)
T ss_pred HHHHHhccCCCCCCCcCCCcccccccCC-CCCcchHHHHHHHHHHHHHcCCc--cHhHHHHHHHHHHHcCCCCCCcccHH
Confidence 5666666777899998754433334433 12356899999999999988742 22468899999999999999998764
Q ss_pred cccccccccccccCCccchHHHHHHHHH
Q 006042 628 IMGVFMRNCMLHYAEYRNIFPLRALAEY 655 (663)
Q Consensus 628 ~~g~f~~~~~~~y~~y~~~~pl~AL~~y 655 (663)
.+++.|+||++|
T Consensus 281 ----------------dt~~al~AL~~y 292 (292)
T cd02897 281 ----------------DTVVALQALAKY 292 (292)
T ss_pred ----------------HHHHHHHHHHcC
Confidence 678999999987
No 20
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=99.91 E-value=4.8e-23 Score=221.55 Aligned_cols=222 Identities=26% Similarity=0.317 Sum_probs=168.4
Q ss_pred HHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHH
Q 006042 343 LGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVN 422 (663)
Q Consensus 343 l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~ 422 (663)
|+++++||.+.|..| |||++.. +++.+|++++++|...+..+ ...+.++|+++
T Consensus 1 ~~~~~~~L~~~Q~~d---------------G~W~~~~-----~~~~~Ta~~~~al~~~g~~~-------~~~~~~~ka~~ 53 (348)
T cd02889 1 IRRALDFLLSLQAPD---------------GHWPGEY-----SQVWDTALALQALLEAGLAP-------EFDPALKKALE 53 (348)
T ss_pred CchHHHHHHHhccCC---------------CCccccC-----CchHHHHHHHHHHHHcCCCC-------ccCHHHHHHHH
Confidence 468999999999875 4455432 57889999999998765321 35689999999
Q ss_pred HHHhhc--------------cccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcch
Q 006042 423 FLLSLQ--------------DEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRK 488 (663)
Q Consensus 423 wLl~~Q--------------n~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~ 488 (663)
||++.| .+ +|||+..... ..++.++.|+.++.+|..++...+. ..
T Consensus 54 ~l~~~q~~~~~~~~~~~~~~~~-~Ggw~y~~~~-------------------~~~~~~~~Ta~~l~al~~~~~~~~~-~~ 112 (348)
T cd02889 54 WLLKSQIRDNPDDWKVKYRHLR-KGGWAFSTAN-------------------QGYPDSDDTAEALKALLRLQKKPPD-GK 112 (348)
T ss_pred HHHhcCCCCCCCchhhcCCCCC-CCcCcccCcC-------------------CCCCCCCChHHHHHHHHHhhccCcc-cc
Confidence 999999 56 8888632211 1234577999999999988754221 12
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCcccCCC--------------------CcchhHHHHHHHHHHHcCCCcCC-----hHH
Q 006042 489 KEIENFIVKAVHYIEDEQTADGSWYGNWG--------------------ICFIYGTCFALGGLQVAGKTYNN-----CLA 543 (663)
Q Consensus 489 ~~~~~~i~rav~~L~~~Q~~DGsw~g~wg--------------------~~~~Y~T~~aL~aL~~~g~~~~~-----~~~ 543 (663)
....+.|+++++||++.|++||+|..... ......|+++|.+|..++..... .+.
T Consensus 113 ~~~~~~i~~a~~~L~~~Q~~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~~~~~~~~ 192 (348)
T cd02889 113 KVSRERLYDAVDWLLSMQNSNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEHRREIDPA 192 (348)
T ss_pred hhhHHHHHHHHHHHHHhccCCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCchHHHHHHH
Confidence 33567999999999999999999963211 12345799999999998875321 168
Q ss_pred HHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCC
Q 006042 544 IRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDF 623 (663)
Q Consensus 544 i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w 623 (663)
++|+++||++.|++||||...+. .+....|++++.+|..+|.... .+.++++++||+++|++||+|
T Consensus 193 i~~a~~~L~~~q~~dG~w~~~~~-------------~~~~y~ta~a~~aL~~~g~~~~-~~~~~~~~~~L~~~Q~~dG~w 258 (348)
T cd02889 193 IRRAVKYLEREQEPDGSWYGRWG-------------VCFIYGTWFALEALAAAGEDEN-SPYVRKACDWLLSKQNPDGGW 258 (348)
T ss_pred HHHHHHHHHHhCCCCCCccccCC-------------CcchHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHccCCCCCc
Confidence 99999999999999999975421 2455689999999999887532 357999999999999999999
Q ss_pred CCC
Q 006042 624 PQQ 626 (663)
Q Consensus 624 ~~~ 626 (663)
...
T Consensus 259 ~~~ 261 (348)
T cd02889 259 GES 261 (348)
T ss_pred CCc
Confidence 863
No 21
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.84 E-value=3.3e-19 Score=186.62 Aligned_cols=278 Identities=18% Similarity=0.128 Sum_probs=201.7
Q ss_pred HHHHHHHhhhheecCCCceeec-CCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhc-ccCCCCCCccccCCCCC
Q 006042 294 KKHLNRIADYIWLGEDGMKVQT-FGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQ-IRDNPVGDYKGNFRHFS 371 (663)
Q Consensus 294 ~~~~~~l~~~~~~~~~g~~~~~-~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q-~~~~~~G~~~~~~~~~~ 371 (663)
+||++.+.+.+. +.....+. ..+.+|-|-+++.+|.-.|.... ...++++++||.++| ..+ |.|
T Consensus 2 ~~h~~~l~~~~~--~~~~~~~~~~~~~~~~~y~~l~~l~ll~~~~~-~~~~~~~i~~l~~~q~~~~---Ggf-------- 67 (286)
T cd02890 2 EKHIKYLQRCLK--LLPSSYTSLDASRLWLLYWILSSLDLLGEDLD-DENKDEIIDFIYSCQVNED---GGF-------- 67 (286)
T ss_pred hHHHHHHHHHhh--cCChhhhhHHhhHHHHHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHhhcCCC---CCC--------
Confidence 588888888754 22333333 36788999999999988876322 467899999999999 654 443
Q ss_pred CCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcC
Q 006042 372 KGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLN 451 (663)
Q Consensus 372 ~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~ 451 (663)
+++ +...+++..|..++.+|..++.. .......+++++||.++|++ ||||.....
T Consensus 68 ----~~~--~~~~~~~~~T~~al~~l~llg~~-------~~~~~~~~~~~~~l~~~q~~-dGgf~~~~~----------- 122 (286)
T cd02890 68 ----GGG--PGQDPHLASTYAAVLSLAILGDD-------ALSRIDREKIYKFLSSLQNP-DGSFRGDLG----------- 122 (286)
T ss_pred ----CCC--CCCCccHHHHHHHHHHHHHcCcc-------ccchhhHHHHHHHHHHhcCC-CCCcccCCC-----------
Confidence 332 24567888999999999887631 01223467899999999999 999964221
Q ss_pred cccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCC-CcchhHHHHHHHH
Q 006042 452 PVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWG-ICFIYGTCFALGG 530 (663)
Q Consensus 452 ~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg-~~~~Y~T~~aL~a 530 (663)
+.+++..|..++.+|..++... +..+++.++||.++|++||+|.+..+ ..++-.|++|+.+
T Consensus 123 ----------~~~d~~~ty~al~~l~ll~~~~--------~~~~~~~~~~l~~~Q~~dGGf~~~~~~es~~~~t~~av~s 184 (286)
T cd02890 123 ----------GEVDTRFVYCALSILSLLNILT--------DIDKEKLIDYILSCQNYDGGFGGVPGAESHGGYTFCAVAS 184 (286)
T ss_pred ----------CCchHHHHHHHHHHHHHhCCch--------hhhHHHHHHHHHHhCCCCCCcCCCCCCCCCccHhHHHHHH
Confidence 1123445667777777776431 24689999999999999999987543 3555568899999
Q ss_pred HHHcCCCcCChHHHHHHHHHHHhhcCCCC-CccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHH
Q 006042 531 LQVAGKTYNNCLAIRRAVDFLLNAQSDDG-GWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRG 609 (663)
Q Consensus 531 L~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-gWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~ 609 (663)
|..+|.. ....++++++||+++|+.+| |+.... +..+++..|.|++-+|...+.... ...++.
T Consensus 185 L~~l~~~--~~~~~~~~~~~L~~~q~~~ggGf~g~~------------~~~~d~~yt~~~~~~l~~l~~~~~--~~~~~l 248 (286)
T cd02890 185 LALLGRL--DLIDKERLLRWLVERQLASGGGFNGRP------------NKLVDTCYSFWVGASLKILGRLHL--IDQEKL 248 (286)
T ss_pred HHHcCCC--cccCHHHHHHHHHHhCCCCCCCcCCCC------------CCCCccchhhHHHHHHHHcccccc--cCHHHH
Confidence 9999886 36789999999999999998 787652 446778899999999998876521 346788
Q ss_pred HHHHH-hcCccCCCCCCCccccccccccccccCCccchHHHHHHH
Q 006042 610 VKLLI-NSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALA 653 (663)
Q Consensus 610 i~~L~-~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~ 653 (663)
.+||+ .+|.++|+|.... +..+ +.|-++|.|.+|+
T Consensus 249 ~~~l~~~~q~~~Ggf~~~~--~~~~-------d~~~T~~~l~~ls 284 (286)
T cd02890 249 REYILSCQQSEVGGFSDKP--GKPP-------DLYHTYYGLSGLS 284 (286)
T ss_pred HHHHHhhcCCCCCCcCCCC--CCCC-------CchhHHHHHHHHH
Confidence 99999 6788999996432 2222 2344567787776
No 22
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.83 E-value=9.3e-19 Score=182.97 Aligned_cols=281 Identities=19% Similarity=0.176 Sum_probs=195.7
Q ss_pred HHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCC
Q 006042 293 FKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSK 372 (663)
Q Consensus 293 ~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~ 372 (663)
+.||++++++.+...-.........+..|-|-+++.+|.-.|..+. -..++.++||.++|... .|.|..
T Consensus 3 ~~~h~~y~~~~~~~~~~~~~~~~~~~r~~~~y~~l~~l~lL~~~~~--~~~~~~i~fl~~~q~~~--~GgF~~------- 71 (287)
T cd02894 3 LEKHIEYILSLTKKKDDYEYILTEHLRMSGIYWGLTALDLLGQLER--LNREEIIEFVKSCQDNE--DGGFGG------- 71 (287)
T ss_pred HHHHHHHHHHhccccCChhhhhHHhhHHHHHHHHHHHHHHhCCCch--hhHHHHHHHHHHHhcCC--CCCCCC-------
Confidence 5789999999865321122222235667788888888888775443 34689999999999432 155431
Q ss_pred CcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCc
Q 006042 373 GAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNP 452 (663)
Q Consensus 373 GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~ 452 (663)
.+..-|++-.|..++.+|..+...+ .++ +..+++++||.++|++ ||||+.....
T Consensus 72 -------~~~~~~~~~~t~~a~~~L~ll~~~~------~i~-~~~~~~~~~i~~~q~~-dGgf~~~~~~----------- 125 (287)
T cd02894 72 -------SPGHDPHILSTLSAIQILALYDLLN------KID-ENKEKIAKFIKGLQNE-DGSFSGDKWG----------- 125 (287)
T ss_pred -------CCCCcchHHHHHHHHHHHHHhhhhh------hcc-HHHHHHHHHHHHHcCC-CCCeecCCCC-----------
Confidence 1122256667888888877654211 122 3578999999999999 9999743211
Q ss_pred ccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCC-CCcchhHHHHHHHHH
Q 006042 453 VEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNW-GICFIYGTCFALGGL 531 (663)
Q Consensus 453 ~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~w-g~~~~Y~T~~aL~aL 531 (663)
.+.+..|..++.+|..++.. . ...++++++||.++|++||+|.++- +..++-.|++|+.+|
T Consensus 126 ----------e~d~~~ty~a~~~l~ll~~~-~-------~i~~~~~~~~l~~~q~~dGGF~~~~~~es~~~~t~cavasL 187 (287)
T cd02894 126 ----------EVDTRFSYCAVLCLTLLGKL-D-------LIDVDKAVDYLLSCYNFDGGFGCRPGAESHAGQIFCCVGAL 187 (287)
T ss_pred ----------CchHHHHHHHHHHHHHhCCc-c-------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCchhHHHHHHHHH
Confidence 11233366666666666432 1 1246999999999999999998754 445666788999999
Q ss_pred HHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Q 006042 532 QVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVK 611 (663)
Q Consensus 532 ~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~ 611 (663)
..+|... ...++++++||+++|+++|||+.. ++..+++..|.|++.+|...+.... ...++..+
T Consensus 188 ~llg~~~--~~~~~~~~~~L~~~q~~~GGf~gr------------~~k~~D~~ysf~~~a~l~~l~~~~~--~~~~~l~~ 251 (287)
T cd02894 188 AILGSLD--LIDRDRLGWWLCERQLPSGGLNGR------------PEKLPDVCYSWWVLSSLKIIGRLHW--INKNKLKN 251 (287)
T ss_pred HHcCccc--ccCHHHHHHHHHHhCCCCCCcCCC------------CCCCCchhHhhHHHHHHHHhccccc--cCHHHHHH
Confidence 9998763 456899999999999999999866 3556888999999999988876532 24788999
Q ss_pred HHHhcCc-cCCCCCCCccccccccccccccCCccchHHHHHHH
Q 006042 612 LLINSQL-ENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALA 653 (663)
Q Consensus 612 ~L~~~Q~-~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~ 653 (663)
||+++|+ ++|||.... +..+ +.|-++|.|-+|+
T Consensus 252 ~l~~~q~~~~GGf~~~p--~~~~-------D~~ht~~~l~~Ls 285 (287)
T cd02894 252 FILACQDEEDGGFADRP--GNMV-------DVFHTFFGLAGLS 285 (287)
T ss_pred HHHHhcCCCCCCcCCCC--CCCC-------ChhHHHHHHHHHH
Confidence 9999994 789996532 2232 3344567777776
No 23
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=99.83 E-value=2.2e-19 Score=187.91 Aligned_cols=189 Identities=23% Similarity=0.226 Sum_probs=154.8
Q ss_pred CCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhc-cccCCCccccccCCchhhhhhcCcccccccccccc
Q 006042 385 QVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQ-DEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEH 463 (663)
Q Consensus 385 pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Q-n~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~ 463 (663)
+.+..|-.++.+|..++. .+....++++++||+++| ++ ||||+..+. +.
T Consensus 25 ~~~~~~y~~l~~l~ll~~--------~~~~~~~~~~i~~l~~~q~~~-~Ggf~~~~~---------------------~~ 74 (286)
T cd02890 25 SRLWLLYWILSSLDLLGE--------DLDDENKDEIIDFIYSCQVNE-DGGFGGGPG---------------------QD 74 (286)
T ss_pred hHHHHHHHHHHHHHHhCC--------CcchHHHHHHHHHHHHhhcCC-CCCCCCCCC---------------------CC
Confidence 466788899988887753 245678999999999999 99 999975421 23
Q ss_pred cccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccC-CCCcchhHHHHHHHHHHHcCCCcCChH
Q 006042 464 TYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGN-WGICFIYGTCFALGGLQVAGKTYNNCL 542 (663)
Q Consensus 464 ~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~-wg~~~~Y~T~~aL~aL~~~g~~~~~~~ 542 (663)
+++..|..++.+|..++.. ... ...++++++||.+.|++||+|.+. ++..+++.|.+++.+|..+|.. ...
T Consensus 75 ~~~~~T~~al~~l~llg~~--~~~----~~~~~~~~~~l~~~q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~--~~~ 146 (286)
T cd02890 75 PHLASTYAAVLSLAILGDD--ALS----RIDREKIYKFLSSLQNPDGSFRGDLGGEVDTRFVYCALSILSLLNIL--TDI 146 (286)
T ss_pred ccHHHHHHHHHHHHHcCcc--ccc----hhhHHHHHHHHHHhcCCCCCcccCCCCCchHHHHHHHHHHHHHhCCc--hhh
Confidence 5677899999999998752 000 124678999999999999999874 5677889999999999999876 367
Q ss_pred HHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCC-
Q 006042 543 AIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENG- 621 (663)
Q Consensus 543 ~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG- 621 (663)
.++++++||+++|++||||++. ++.++++..|+||+.+|..++..+ +..+++.++||+++|..+|
T Consensus 147 ~~~~~~~~l~~~Q~~dGGf~~~------------~~~es~~~~t~~av~sL~~l~~~~--~~~~~~~~~~L~~~q~~~gg 212 (286)
T cd02890 147 DKEKLIDYILSCQNYDGGFGGV------------PGAESHGGYTFCAVASLALLGRLD--LIDKERLLRWLVERQLASGG 212 (286)
T ss_pred hHHHHHHHHHHhCCCCCCcCCC------------CCCCCCccHhHHHHHHHHHcCCCc--ccCHHHHHHHHHHhCCCCCC
Confidence 8999999999999999999976 356789999999999999998764 2369999999999999887
Q ss_pred CCCC
Q 006042 622 DFPQ 625 (663)
Q Consensus 622 ~w~~ 625 (663)
||..
T Consensus 213 Gf~g 216 (286)
T cd02890 213 GFNG 216 (286)
T ss_pred CcCC
Confidence 6643
No 24
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=99.82 E-value=2.1e-18 Score=179.24 Aligned_cols=242 Identities=24% Similarity=0.224 Sum_probs=179.8
Q ss_pred CcHHHHHHHHHHhhhheecCCCceeecC---CCCchHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHhhcccCCCCCCcc
Q 006042 289 NGIAFKKHLNRIADYIWLGEDGMKVQTF---GSQTWDTALGLQALMACNIAD-EVESVLGKGHDYLKKAQIRDNPVGDYK 364 (663)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~g~~~~~~---~s~vwdTal~~~AL~~ag~~~-~~~~~l~ka~~wL~~~Q~~~~~~G~~~ 364 (663)
....+++++++|.++. .+||.+.... .+.+|.|++++++|...+... ...+.++++++||.+.|..+ |.|.
T Consensus 50 ~~~~~~~~~~~l~~~q--~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~q~~d---G~~~ 124 (300)
T cd00688 50 ADENIEKGIQRLLSYQ--LSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYIAVDRIDLARALNWLLSLQNED---GGFR 124 (300)
T ss_pred chHHHHHHHHHHHhcc--CCCCCccCCCCCCCcchHhHHHHHHHHHHcCCccccCHHHHHHHHHHHHHccCCC---CCee
Confidence 4568999999999873 6677553322 468999999999999987531 12578999999999999875 6665
Q ss_pred ccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCch
Q 006042 365 GNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGAS 444 (663)
Q Consensus 365 ~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~ 444 (663)
...+... + .....++++.|+.++.+|..++.. ...+.+.++++||.++|++ ||||. ..
T Consensus 125 ~~~~~~~--~-----~~~~~~~~~~t~~al~aL~~~~~~--------~~~~~~~~~~~~l~~~q~~-~g~~~-~~----- 182 (300)
T cd00688 125 EDGPGNH--R-----IGGDESDVRLTAYALIALALLGKL--------DPDPLIEKALDYLLSCQNY-DGGFG-PG----- 182 (300)
T ss_pred eecCCCC--c-----ccCCCCcccHHHHHHHHHHHcCCC--------CCcHHHHHHHHHHHHHhcC-CCCcC-CC-----
Confidence 3222110 0 112346788999999999887531 1157899999999999999 99991 10
Q ss_pred hhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCC----CCcc
Q 006042 445 LLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNW----GICF 520 (663)
Q Consensus 445 ~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~w----g~~~ 520 (663)
..+++..|+.++.+|..++.. ....++++++||.+.|+++|+|...+ ....
T Consensus 183 -----------------~~~~~~~t~~~~~aL~~~~~~--------~~~~~~~~~~~L~~~q~~~g~~~~~~~~~~~~~~ 237 (300)
T cd00688 183 -----------------GESHGYGTACAAAALALLGDL--------DSPDAKKALRWLLSRQRPDGGWGEGRDRTNKLSD 237 (300)
T ss_pred -----------------ccccHHHHHHHHHHHHHcCCc--------chHHHHHHHHHHHHhcCCCCCcCccccCCCCcCc
Confidence 113566799999999887642 13578999999999999999997653 1334
Q ss_pred hhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHH
Q 006042 521 IYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLIS 595 (663)
Q Consensus 521 ~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ 595 (663)
.+.|.+++.+|...+.. ...+.++++++||+++|++||||+... ...++...|+++|+||..
T Consensus 238 ~~~~~~~~~aL~~~~~~-~~~~~~~~~~~~L~~~q~~~G~w~~~~------------~~~~~~~~t~~al~aL~~ 299 (300)
T cd00688 238 SCYTEWAAYALLALGKL-GDLEDAEKLVKWLLSQQNEDGGFSSKP------------GKSYDTQHTVFALLALSL 299 (300)
T ss_pred hHHHHHHHHHHHHHhhh-cCcccHHHHHHHHHhccCCCCCcCcCC------------CCCCcchhhHHHHHHHhc
Confidence 55677788888887653 136789999999999999999999753 234667799999999964
No 25
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.81 E-value=8.5e-19 Score=184.88 Aligned_cols=223 Identities=21% Similarity=0.291 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHH
Q 006042 341 SVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDA 420 (663)
Q Consensus 341 ~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a 420 (663)
-.++|.++||.+.|... |.|... . .++ ..+..+-.++.+|..++.. .....+++
T Consensus 8 l~~~kh~~yl~~~~~~~---~~~~~~---------~---~~~--~r~~~~y~~l~~L~lL~~~---------~~~~~~~~ 61 (316)
T PLN03201 8 LVVDKHVRYIKSLEKKK---DSFESV---------V---MEH--LRMNGAYWGLTALDLLGKL---------DDVDRDEV 61 (316)
T ss_pred ccHHHHHHHHHHhCCCC---CCcccc---------c---ccc--chHHHHHHHHHHHHHhCCC---------ccccHHHH
Confidence 34789999999987742 443210 0 010 1122465677777777542 12335889
Q ss_pred HHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHH
Q 006042 421 VNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVH 500 (663)
Q Consensus 421 ~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~ 500 (663)
++||+++|++ ||||+.++.. .++...|..++.+|..+.+. . .+ ..++.++
T Consensus 62 i~~l~~cq~~-~GGF~~~~~~---------------------~~h~~~Ty~al~~L~ll~~~-~-----~i--d~~~~~~ 111 (316)
T PLN03201 62 VSWVMRCQHE-SGGFGGNTGH---------------------DPHILYTLSAVQILALFDRL-D-----LL--DADKVAS 111 (316)
T ss_pred HHHHHHhcCC-CCCcCCCCCC---------------------cccHHHHHHHHHHHHHhhhh-h-----hh--hHHHHHH
Confidence 9999999999 9999865422 14566788999999887432 1 12 3578999
Q ss_pred HHHHhcccCCCccc-CCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCC
Q 006042 501 YIEDEQTADGSWYG-NWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGK 579 (663)
Q Consensus 501 ~L~~~Q~~DGsw~g-~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~ 579 (663)
||.+.|++||||.+ .++..+++.|.+|+.++..++.. ....++++++||+++|++||||+.. ++.
T Consensus 112 ~l~s~Q~~dGgF~~~~~ge~D~r~ty~a~a~l~LL~~~--~~i~~~~~~~~i~scq~~dGGF~~~------------p~~ 177 (316)
T PLN03201 112 YVAGLQNEDGSFSGDEWGEIDTRFSYCALCCLSLLKRL--DKINVEKAVDYIVSCKNFDGGFGCT------------PGG 177 (316)
T ss_pred HHHHhcCCCCCccCCCCCCccHHHHHHHHHHHHHhCcc--chhHHHHHHHHHHHhcCCCCCcCCC------------CCC
Confidence 99999999999987 67888888888898888888764 3467899999999999999999976 366
Q ss_pred CCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccccccc
Q 006042 580 RSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCM 637 (663)
Q Consensus 580 ~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~ 637 (663)
+++...|++|+.+|..+|..+.. ..++.++||+++|..+|||.... +.++..||
T Consensus 178 esh~g~T~caiaaL~llg~~~~~--d~~~l~~wL~~rQ~~~GGf~grp--~k~~D~cy 231 (316)
T PLN03201 178 ESHAGQIFCCVGALAITGSLHHV--DKDLLGWWLCERQVKSGGLNGRP--EKLPDVCY 231 (316)
T ss_pred CCccceehHHHHHHHHcCccccC--CHHHHHHHHHHhCCCCCCcCCCC--CCCCchHH
Confidence 88888999999999998865322 35678999999999999997442 34555553
No 26
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.79 E-value=1.9e-17 Score=174.09 Aligned_cols=294 Identities=16% Similarity=0.112 Sum_probs=195.9
Q ss_pred HHHHHHHhhhheecCCCceeecC-CCCchHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHhhc----ccCCCCCCcccc
Q 006042 294 KKHLNRIADYIWLGEDGMKVQTF-GSQTWDTALGLQALMACNIAD--EVESVLGKGHDYLKKAQ----IRDNPVGDYKGN 366 (663)
Q Consensus 294 ~~~~~~l~~~~~~~~~g~~~~~~-~s~vwdTal~~~AL~~ag~~~--~~~~~l~ka~~wL~~~Q----~~~~~~G~~~~~ 366 (663)
+||++++.+.+..-+.. ++.. .+.+|-|-+++.+|.-.|... . ...-++.++||.++| ..+ |+|...
T Consensus 2 ~~H~~y~~~~l~~lp~~--~~~~d~~r~~~~yf~l~~L~lL~~~~~~~-~~~r~~~i~~i~~~q~~~~~~~---GgF~~~ 75 (307)
T cd02895 2 KKHVKFFQRCLQLLPSS--YQSLDTNRLTIAFFALSGLDLLGALDSIL-VEEKDDIIEWIYSLQVLSNLPR---GGFRGS 75 (307)
T ss_pred hHHHHHHHHHhhhCCch--hhhhhhhhHHHHHHHHHHHHHhCCCcccc-HHHHHHHHHHHHHHhcccCCCC---CCCCCC
Confidence 58888888876533333 2222 567788889998888776433 1 234578999999999 433 666421
Q ss_pred CCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhh
Q 006042 367 FRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLL 446 (663)
Q Consensus 367 ~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~ 446 (663)
..+..++ .......+++..|-.|+.+|..++.. ......++.++||.++|++ ||||+......
T Consensus 76 ~~~~~~~----~~~~~~~~~l~~ty~Al~~L~lL~~~--------~~~idr~~i~~~l~~~q~~-dGgF~~~~~~~---- 138 (307)
T cd02895 76 STLGLPG----TASKYDTGNLAMTYFALLSLLILGDD--------LSRVDRKAILNFLSKLQLP-DGSFGSVLDSE---- 138 (307)
T ss_pred CCCcccc----ccccCCcccHHHHHHHHHHHHHhCCc--------hhhhhHHHHHHHHHHhCCC-CCCccCCcCCc----
Confidence 1000000 00112346778899999988877531 1122357889999999999 99997543100
Q ss_pred hhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccC-CCCcchhHHH
Q 006042 447 LEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGN-WGICFIYGTC 525 (663)
Q Consensus 447 l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~-wg~~~~Y~T~ 525 (663)
+ +.+..-.|..++.++..++...+ + ....++.++||.++|+.||+|.+. ++..+.-.|+
T Consensus 139 ---------~-----~e~d~r~ty~Av~~l~lL~~~~~----~--~~d~~~li~~l~s~Q~~dGGF~~~~~~Esh~g~Ty 198 (307)
T cd02895 139 ---------G-----GENDMRFCYCAVAICYMLDDWSE----E--DIDKEKLIDYIKSSQSYDGGFGQGPGLESHGGSTF 198 (307)
T ss_pred ---------C-----CCccHHHHHHHHHHHHHhCCCcc----c--cccHHHHHHHHHHccCCCCCccCCCCCCccccHHH
Confidence 0 01233346666666666654311 0 124689999999999999999764 3344444677
Q ss_pred HHHHHHHHcCCCcC-ChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcH
Q 006042 526 FALGGLQVAGKTYN-NCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPT 604 (663)
Q Consensus 526 ~aL~aL~~~g~~~~-~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~ 604 (663)
+|+.+|..++.... ....+++.++||+++|+.+|||+.. ++..+++..|.|++.+|...+.... .
T Consensus 199 ca~asL~lL~~~~~~~~~~~~~l~~wL~~rQ~~~GGF~gr------------~~k~~D~cysfw~~a~L~iL~~~~~--i 264 (307)
T cd02895 199 CAIASLSLLGKLEELSEKFLERLKRWLVHRQVSGTGFNGR------------PNKPADTCYSFWVGASLKLLDAFQL--I 264 (307)
T ss_pred HHHHHHHHcCCccccccccHHHHHHHHHHhcCCCCCcCCC------------CCCCCccchhhHHHHHHHHcCcccc--c
Confidence 88888988887520 1467889999999999999999876 3556888899999999988876532 3
Q ss_pred HHHHHHHHHHhcCc-cCCCCCCCccccccccccccccCCccchHHHHHHH
Q 006042 605 PIHRGVKLLINSQL-ENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALA 653 (663)
Q Consensus 605 ~v~r~i~~L~~~Q~-~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~ 653 (663)
.+++..+||+++|+ .+|||.... |..| +.|-++|.|-||+
T Consensus 265 d~~~l~~~l~~~q~~~~GGf~~~p--~~~~-------D~~ht~~~la~Ls 305 (307)
T cd02895 265 DFEKNRNYLLSTQQSLVGGFAKNP--DSHP-------DPLHSYLGLAALS 305 (307)
T ss_pred CHHHHHHHHHHHcCCCCCCcCCCC--CCCC-------ChhHHHHHHHHHH
Confidence 57899999998875 589997543 2233 2344567888876
No 27
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=99.78 E-value=9.5e-18 Score=175.39 Aligned_cols=186 Identities=27% Similarity=0.317 Sum_probs=145.2
Q ss_pred ccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhc-cccCCCccccccCCchhhhhhcCcccccccccccccc
Q 006042 387 SDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQ-DEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTY 465 (663)
Q Consensus 387 ~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Q-n~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~ 465 (663)
..-|-+++.+|..++.. .....++.++||.++| +. +|||...+.. .++
T Consensus 30 ~~~~y~~l~~l~lL~~~---------~~~~~~~~i~fl~~~q~~~-~GgF~~~~~~---------------------~~~ 78 (287)
T cd02894 30 MSGIYWGLTALDLLGQL---------ERLNREEIIEFVKSCQDNE-DGGFGGSPGH---------------------DPH 78 (287)
T ss_pred HHHHHHHHHHHHHhCCC---------chhhHHHHHHHHHHHhcCC-CCCCCCCCCC---------------------cch
Confidence 35678888888777631 2234689999999999 77 9999754321 134
Q ss_pred cCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccC-CCCcchhHHHHHHHHHHHcCCCcCChHHH
Q 006042 466 VECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGN-WGICFIYGTCFALGGLQVAGKTYNNCLAI 544 (663)
Q Consensus 466 ~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~-wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i 544 (663)
+..|..++.+|..++.. . .+++.++++++||.+.|++||+|.+. ++..++..|..|+.+|..++.. ....+
T Consensus 79 ~~~t~~a~~~L~ll~~~-~-----~i~~~~~~~~~~i~~~q~~dGgf~~~~~~e~d~~~ty~a~~~l~ll~~~--~~i~~ 150 (287)
T cd02894 79 ILSTLSAIQILALYDLL-N-----KIDENKEKIAKFIKGLQNEDGSFSGDKWGEVDTRFSYCAVLCLTLLGKL--DLIDV 150 (287)
T ss_pred HHHHHHHHHHHHHhhhh-h-----hccHHHHHHHHHHHHHcCCCCCeecCCCCCchHHHHHHHHHHHHHhCCc--chhhH
Confidence 55688888888876432 1 24456899999999999999999874 7776666677777778777754 35678
Q ss_pred HHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCC
Q 006042 545 RRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFP 624 (663)
Q Consensus 545 ~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~ 624 (663)
+++++||+++|++||||++. ++.++++..|+||+.+|...|..+. ..+++.++||+++|.++|||.
T Consensus 151 ~~~~~~l~~~q~~dGGF~~~------------~~~es~~~~t~cavasL~llg~~~~--~~~~~~~~~L~~~q~~~GGf~ 216 (287)
T cd02894 151 DKAVDYLLSCYNFDGGFGCR------------PGAESHAGQIFCCVGALAILGSLDL--IDRDRLGWWLCERQLPSGGLN 216 (287)
T ss_pred HHHHHHHHHcCCCCCCcCCC------------CCCCCchhHHHHHHHHHHHcCcccc--cCHHHHHHHHHHhCCCCCCcC
Confidence 99999999999999999976 3668999999999999999987643 258999999999999999995
Q ss_pred C
Q 006042 625 Q 625 (663)
Q Consensus 625 ~ 625 (663)
.
T Consensus 217 g 217 (287)
T cd02894 217 G 217 (287)
T ss_pred C
Confidence 3
No 28
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.78 E-value=6e-17 Score=169.82 Aligned_cols=282 Identities=18% Similarity=0.154 Sum_probs=189.8
Q ss_pred HHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCC
Q 006042 294 KKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKG 373 (663)
Q Consensus 294 ~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~G 373 (663)
.+|++++.+.+...+ +.......+.+|-+-+++.+|.-.|...+ ....++.++||.++|..+ |.|..
T Consensus 2 ~~h~~~~~~~l~~~p-~~~~~~d~~~~~~~y~~l~~l~lL~~~~~-~~~~~~~i~~i~~~q~~~---GgF~~-------- 68 (299)
T cd02893 2 EKHIKYLKKSLRQLP-SSFTSLDASRPWLLYWILHSLELLGEELD-QSYADDVISFLRRCQNPS---GGFGG-------- 68 (299)
T ss_pred hHHHHHHHHHhhcCC-ccccccccccHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCCC---CCCCC--------
Confidence 588999888765332 22222336788999999999988775222 345789999999999865 55431
Q ss_pred cccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcc
Q 006042 374 AWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPV 453 (663)
Q Consensus 374 gW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~ 453 (663)
.....+++-.|-.|+.+|..++..+ ....-..+++++||.++|++ ||||...+...
T Consensus 69 ------~~~~~~h~~~Ty~A~~~L~ll~~~~------~~~~id~~~~~~~l~~~q~~-dGgf~~~~~~e----------- 124 (299)
T cd02893 69 ------GPGQLPHLATTYAAVNALAIIGTEE------AYDVIDREALYKFLLSLKQP-DGSFRMHVGGE----------- 124 (299)
T ss_pred ------CCCCCccHHHHHHHHHHHHHhCCch------hhhHhhHHHHHHHHHHhcCC-CCCeeCCCCCC-----------
Confidence 1233577888999999888875311 01222346799999999999 99997542211
Q ss_pred cccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCC-CcchhHHHHHHHHHH
Q 006042 454 EFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWG-ICFIYGTCFALGGLQ 532 (663)
Q Consensus 454 e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg-~~~~Y~T~~aL~aL~ 532 (663)
.|-.++ ..++.++..++.. + +..++++++||+++|+.||+|.++-+ ..+.--|++++.+|.
T Consensus 125 -------~D~r~t---ycava~~~lL~~~-~-------~~~~~~~~~~l~~cQ~~dGGF~~~p~~e~h~~yTfcavasL~ 186 (299)
T cd02893 125 -------VDVRGT---YCAISVASLLNIL-T-------DELFEGVAEYILSCQTYEGGFGGVPGNEAHGGYTFCALAALA 186 (299)
T ss_pred -------chHhHH---HHHHHHHHHhCCC-c-------hhhHHHHHHHHHHcCCCCCCcCCCCCCCCCccHHHHHHHHHH
Confidence 121222 3333333333322 1 23579999999999999999987543 334444778899999
Q ss_pred HcCCCcCChHHHHHHHHHHHhhcCC-CCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCC-----------
Q 006042 533 VAGKTYNNCLAIRRAVDFLLNAQSD-DGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQAD----------- 600 (663)
Q Consensus 533 ~~g~~~~~~~~i~ra~~~Ll~~Q~~-DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~----------- 600 (663)
.+|.. ....+++.++||+++|.+ +||+...+ +..+++..|.|++-+|...+...
T Consensus 187 llg~~--~~~d~~~l~~wl~~~q~~~~GGf~grp------------~k~~D~cys~w~~a~l~ll~~~~~~~~~~~~~~~ 252 (299)
T cd02893 187 ILGKP--DKLDLESLLRWLVARQMRFEGGFQGRT------------NKLVDGCYSFWVGGSLPILEAILNAEKKFDDSAE 252 (299)
T ss_pred HcCCc--cccCHHHHHHHHHhhcCCCCCCcCCCC------------CCCCccHHHHHHHHHHHHHHHHhccccccccccc
Confidence 99875 245688999999999988 99998763 45678888999998887665421
Q ss_pred CCcHHHHHHHHHHHh-cCccCCCCCCCccccccccccccccCCccchHHHHHHH
Q 006042 601 RDPTPIHRGVKLLIN-SQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALA 653 (663)
Q Consensus 601 ~~~~~v~r~i~~L~~-~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~ 653 (663)
......++..+||+. +|..+|||.... +..| +.|-+.|.|-+|+
T Consensus 253 ~~~~~~~~l~~~il~~~q~~~GGf~~~p--~~~~-------D~yHT~~~l~~Ls 297 (299)
T cd02893 253 GTLFDQEALQEYILLCCQSEEGGLRDKP--GKPR-------DFYHTCYALSGLS 297 (299)
T ss_pred ccccCHHHHHHHHHHhcCCCCCCcCCCC--CCCC-------CchhHHHHHHHHh
Confidence 011246788999995 456789997532 2222 2345667887776
No 29
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional
Probab=99.76 E-value=1.3e-16 Score=168.34 Aligned_cols=280 Identities=17% Similarity=0.156 Sum_probs=187.5
Q ss_pred HHHHHHHHHhhhheecCCCcee-ec-CCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCC
Q 006042 292 AFKKHLNRIADYIWLGEDGMKV-QT-FGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRH 369 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~g~~~-~~-~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~ 369 (663)
.+.||++++.+.+ ...+.+. .. ....++.+-+++.+|.-.|..+. ...+++++||.++|..+ |.|..
T Consensus 9 ~~~kh~~yl~~~~--~~~~~~~~~~~~~~r~~~~y~~l~~L~lL~~~~~--~~~~~~i~~l~~cq~~~---GGF~~---- 77 (316)
T PLN03201 9 VVDKHVRYIKSLE--KKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDD--VDRDEVVSWVMRCQHES---GGFGG---- 77 (316)
T ss_pred cHHHHHHHHHHhC--CCCCCccccccccchHHHHHHHHHHHHHhCCCcc--ccHHHHHHHHHHhcCCC---CCcCC----
Confidence 4689999998863 3334321 11 12344457667777766554332 33589999999999865 55531
Q ss_pred CCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhh
Q 006042 370 FSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEW 449 (663)
Q Consensus 370 ~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~ 449 (663)
.....|+.-.|..|+.+|..+.+ ...-..+++++||.++|++ ||||......
T Consensus 78 ----------~~~~~~h~~~Ty~al~~L~ll~~---------~~~id~~~~~~~l~s~Q~~-dGgF~~~~~g-------- 129 (316)
T PLN03201 78 ----------NTGHDPHILYTLSAVQILALFDR---------LDLLDADKVASYVAGLQNE-DGSFSGDEWG-------- 129 (316)
T ss_pred ----------CCCCcccHHHHHHHHHHHHHhhh---------hhhhhHHHHHHHHHHhcCC-CCCccCCCCC--------
Confidence 11223577789989888877643 1222356799999999999 9999742110
Q ss_pred cCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCC-CCcchhHHHHHH
Q 006042 450 LNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNW-GICFIYGTCFAL 528 (663)
Q Consensus 450 ~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~w-g~~~~Y~T~~aL 528 (663)
..| +.-|..++.++..++... ...++++++||.++|++||+|.+.- +..+.-.|++++
T Consensus 130 ----------e~D---~r~ty~a~a~l~LL~~~~--------~i~~~~~~~~i~scq~~dGGF~~~p~~esh~g~T~cai 188 (316)
T PLN03201 130 ----------EID---TRFSYCALCCLSLLKRLD--------KINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQIFCCV 188 (316)
T ss_pred ----------Ccc---HHHHHHHHHHHHHhCccc--------hhHHHHHHHHHHHhcCCCCCcCCCCCCCCccceehHHH
Confidence 011 112444555555554321 1247999999999999999998753 344555578899
Q ss_pred HHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHH
Q 006042 529 GGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHR 608 (663)
Q Consensus 529 ~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r 608 (663)
.+|..+|... ....++..+||.++|..+||+...+ +...+...|.|++.+|...+...- ...++
T Consensus 189 aaL~llg~~~--~~d~~~l~~wL~~rQ~~~GGf~grp------------~k~~D~cys~w~~a~L~ll~~~~~--~d~~~ 252 (316)
T PLN03201 189 GALAITGSLH--HVDKDLLGWWLCERQVKSGGLNGRP------------EKLPDVCYSWWVLSSLIIIDRVHW--IDKDK 252 (316)
T ss_pred HHHHHcCccc--cCCHHHHHHHHHHhCCCCCCcCCCC------------CCCCchHHHHHHHHHHHHhccccc--cCHHH
Confidence 9999988652 2235677899999999999999763 456788899999999998876532 24678
Q ss_pred HHHHHHhcCcc-CCCCCCCccccccccccccccCCccchHHHHHHHHHH
Q 006042 609 GVKLLINSQLE-NGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYR 656 (663)
Q Consensus 609 ~i~~L~~~Q~~-dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~ 656 (663)
..+||+++|++ .||+.... +..|. .|=++|.|-+|+...
T Consensus 253 l~~~i~~~q~~~~GGf~~~p--~~~~D-------~~ht~~~l~~lsl~~ 292 (316)
T PLN03201 253 LAKFILDCQDDENGGISDRP--DDAVD-------VFHTFFGVAGLSLLG 292 (316)
T ss_pred HHHHHHHHcCCCCCCcCCCc--CCCCC-------hhHHHHHHHHHHhcC
Confidence 99999999985 69887543 22322 233567777777653
No 30
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.71 E-value=3.4e-16 Score=159.92 Aligned_cols=219 Identities=24% Similarity=0.259 Sum_probs=156.0
Q ss_pred CCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccc
Q 006042 382 HGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIV 461 (663)
Q Consensus 382 ~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~ 461 (663)
+.-++++.||++++.|..+.+. ..++++.+.++++||++.|++ ||+|..... .+...|.
T Consensus 22 ~~~~s~WLTAfv~k~f~~a~~~------i~vd~~~i~~a~~wL~~~Q~~-dG~F~e~~~--------------~~~~~~~ 80 (246)
T PF07678_consen 22 DSPSSTWLTAFVVKVFSQAKKY------IFVDENVICRAVKWLISQQQP-DGSFEEDGP--------------VIHREMQ 80 (246)
T ss_dssp TSSBBHHHHHHHHHHHHHHTTT------S-CEHHHHHHHHHHHHHHBET-TSEB--SSS---------------SSGGGS
T ss_pred CCcccHHHHHHHHHHHHHHHHh------hcCCHHHHHHHHHHHHHhhcC-CCccccCCC--------------ccccccC
Confidence 3456889999999999988753 237889999999999999999 999953221 1222222
Q ss_pred c--ccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcC
Q 006042 462 E--HTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYN 539 (663)
Q Consensus 462 d--~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~ 539 (663)
+ ...+..||+|+.+|...+...+.. .......++||++||.+.... ...+|..+.+..||..+|.
T Consensus 81 g~~~~~~~lTA~VliAL~e~~~~~~~~-~~~~~~~i~kA~~~L~~~~~~---------~~~~Y~lAl~aYAL~la~~--- 147 (246)
T PF07678_consen 81 GGVEDDIALTAYVLIALLEAGSLCDSE-KPEYENAINKALNYLERHLDN---------IQDPYTLALVAYALALAGD--- 147 (246)
T ss_dssp GGGTHHHHHHHHHHHHHHHCHCCHTTT-HHCHHHHHHHHHHHHHHHHGC---------TSSHHHHHHHHHHHHHTTT---
T ss_pred CCCCCCeeehHHHHHHHHhhhhhcccc-chhhHHHHHHHHHHHHHhccc---------cCCHHHHHHHHHHHHhhcc---
Confidence 1 235678999999999987321111 234678999999999887321 4578999999999999873
Q ss_pred ChHHHHHHHHHHHhhcCCCCC---ccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 006042 540 NCLAIRRAVDFLLNAQSDDGG---WGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINS 616 (663)
Q Consensus 540 ~~~~i~ra~~~Ll~~Q~~DGg---Wg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~ 616 (663)
++..+++.+-|.+....+|+ |...........+.. .+...+++.|||||++++..+. .+...+.++||.++
T Consensus 148 -~~~~~~~~~~L~~~a~~~~~~~~W~~~~~~~~~~~~~~-~~~s~~vEtTaYaLLa~l~~~~----~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 148 -SPQASKLLNKLNSMATTEGGLRYWSSDESSSSSSSPWS-RGSSLDVETTAYALLALLKRGD----LEEASPIVRWLISQ 221 (246)
T ss_dssp -CHHHHHHHHHHHCHCEETTTTCEE-SSSSSSSSSSTTT--SHHHHHHHHHHHHHHHHHHTC----HHHHHHHHHHHHHC
T ss_pred -cchHHHHHHHHHHhhhhccccCcccCCccccccccccc-ccchHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHh
Confidence 46788888889888777655 544321110000000 0123457889999999998842 24688999999999
Q ss_pred CccCCCCCCCccccccccccccccCCccchHHHHHHHHHH
Q 006042 617 QLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYR 656 (663)
Q Consensus 617 Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~ 656 (663)
|+.+|+|...+ .++..|.||+.|.
T Consensus 222 r~~~Ggf~STQ----------------dTvvaL~AL~~Ya 245 (246)
T PF07678_consen 222 RNSGGGFGSTQ----------------DTVVALQALAEYA 245 (246)
T ss_dssp TTTTSSTSSHH----------------HHHHHHHHHHHHH
T ss_pred cCCCCccCcHH----------------HHHHHHHHHHHHh
Confidence 99999998764 6789999999995
No 31
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). FTases are a subgroup of PTase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. These proteins are heterodimers of alpha and beta subunits. Both subunits are required for catalytic activity. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids. Ftase attaches a 15-carbon farnesyl group to the cysteine within the C-terminal CaaX motif of substrate proteins when X is Ala, Met, Ser, Cys or Gln. Protein farnesylation has been shown to play critical roles in a variety of cellular pro
Probab=99.70 E-value=1.1e-15 Score=160.43 Aligned_cols=189 Identities=18% Similarity=0.200 Sum_probs=144.6
Q ss_pred CccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccc
Q 006042 386 VSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTY 465 (663)
Q Consensus 386 d~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~ 465 (663)
.++.|-.++.+|..++. ...+...++.++||.++|++ ||||+.... +.++
T Consensus 26 ~~~~~y~~l~~l~lL~~--------~~~~~~~~~~i~~i~~~q~~-~GgF~~~~~---------------------~~~h 75 (299)
T cd02893 26 RPWLLYWILHSLELLGE--------ELDQSYADDVISFLRRCQNP-SGGFGGGPG---------------------QLPH 75 (299)
T ss_pred cHHHHHHHHHHHHHhCC--------cccHHHHHHHHHHHHHhcCC-CCCCCCCCC---------------------CCcc
Confidence 45778889988888763 23455678999999999999 999975321 2356
Q ss_pred cCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccC-CCCcchhHHHHHHHHHHHcCCCcCChHHH
Q 006042 466 VECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGN-WGICFIYGTCFALGGLQVAGKTYNNCLAI 544 (663)
Q Consensus 466 ~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~-wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i 544 (663)
.-.|..++.+|..++.. +.. ..+ ..++.++||.+.|++||+|... .+..++-.|..|+..+..++.. ....+
T Consensus 76 ~~~Ty~A~~~L~ll~~~-~~~--~~i--d~~~~~~~l~~~q~~dGgf~~~~~~e~D~r~tycava~~~lL~~~--~~~~~ 148 (299)
T cd02893 76 LATTYAAVNALAIIGTE-EAY--DVI--DREALYKFLLSLKQPDGSFRMHVGGEVDVRGTYCAISVASLLNIL--TDELF 148 (299)
T ss_pred HHHHHHHHHHHHHhCCc-hhh--hHh--hHHHHHHHHHHhcCCCCCeeCCCCCCchHhHHHHHHHHHHHhCCC--chhhH
Confidence 66788899988888642 000 112 2467999999999999999863 4455565666677777777764 35678
Q ss_pred HHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCcc-CCCC
Q 006042 545 RRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLE-NGDF 623 (663)
Q Consensus 545 ~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~-dG~w 623 (663)
+++++||+++|+.||||+.. |+.+++...|.||+.+|..++..+. ..+++.++||+++|.+ +|||
T Consensus 149 ~~~~~~l~~cQ~~dGGF~~~------------p~~e~h~~yTfcavasL~llg~~~~--~d~~~l~~wl~~~q~~~~GGf 214 (299)
T cd02893 149 EGVAEYILSCQTYEGGFGGV------------PGNEAHGGYTFCALAALAILGKPDK--LDLESLLRWLVARQMRFEGGF 214 (299)
T ss_pred HHHHHHHHHcCCCCCCcCCC------------CCCCCCccHHHHHHHHHHHcCCccc--cCHHHHHHHHHhhcCCCCCCc
Confidence 99999999999999999865 3668899999999999999887542 2588999999999988 8988
Q ss_pred CC
Q 006042 624 PQ 625 (663)
Q Consensus 624 ~~ 625 (663)
..
T Consensus 215 ~g 216 (299)
T cd02893 215 QG 216 (299)
T ss_pred CC
Confidence 63
No 32
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.69 E-value=5.1e-15 Score=159.87 Aligned_cols=235 Identities=15% Similarity=0.145 Sum_probs=157.7
Q ss_pred HHHHHHHHHhhhheecCCCceeec-CCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCC
Q 006042 292 AFKKHLNRIADYIWLGEDGMKVQT-FGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHF 370 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~g~~~~~-~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~ 370 (663)
.+.+|++++++.+..-+ ..++. ..+..|-+-+++.+|.-.|..-+ ....++.++||.++|..+ |+|.
T Consensus 45 ~~~~H~~yl~~~l~~lp--~~~~~lDa~r~~~~Yw~L~sL~lLg~~l~-~~~~~~ii~~l~~cQ~~d---GGFg------ 112 (439)
T PLN02710 45 WREKHLEYLTRGLRQLG--PSFSVLDANRPWLCYWILHSIALLGESLD-DELENDTIDFLSRCQDPN---GGYG------ 112 (439)
T ss_pred cHHHHHHHHHHHhhcCC--hhhhhhhhhhHHHHHHHHHHHHHhCCccc-HHHHHHHHHHHHHhcCCC---cCCC------
Confidence 37799999988765322 22222 25788999999999987775311 234578999999999865 5543
Q ss_pred CCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhc
Q 006042 371 SKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWL 450 (663)
Q Consensus 371 ~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~ 450 (663)
| .....+++..|-.|+.+|..++.... . ..++ .++.++||.++|++ ||||...+...
T Consensus 113 ---g-----~pg~~~hl~~TY~Av~~L~iLg~~~~--l-~~Id---r~~l~~fl~s~q~~-dGgF~~~~~gE-------- 169 (439)
T PLN02710 113 ---G-----GPGQLPHLATTYAAVNTLVTIGGERA--L-SSIN---REKLYTFLLRMKDP-SGGFRMHDGGE-------- 169 (439)
T ss_pred ---C-----CCCCCccHHHHHHHHHHHHHcCCchh--h-cccC---HHHHHHHHHHcCCC-CCCcccCCCCC--------
Confidence 1 11234677789999999888764110 0 1133 46789999999999 99997533211
Q ss_pred CcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCC-CcchhHHHHHHH
Q 006042 451 NPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWG-ICFIYGTCFALG 529 (663)
Q Consensus 451 ~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg-~~~~Y~T~~aL~ 529 (663)
.|..+ |..++..+..++... ...+++.++||.++|+.||+|.+.-+ ..+.--|++++.
T Consensus 170 ----------~D~R~---tYcAlail~LL~~l~--------~~~~e~~~~~I~scQ~~dGGF~g~P~~EaH~gyTfcavA 228 (439)
T PLN02710 170 ----------MDVRA---CYTAISVASLLNILD--------DELVKGVGDYILSCQTYEGGIGGEPGAEAHGGYTFCGLA 228 (439)
T ss_pred ----------CCcCC---cHHHHHHHHHhCcCc--------hhhHHHHHHHHHHhCCCCCCCCCCCCCCCchHHHHHHHH
Confidence 12223 333444444443321 12478999999999999999987543 445556788999
Q ss_pred HHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHc
Q 006042 530 GLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISA 596 (663)
Q Consensus 530 aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~a 596 (663)
+|..+|... ...+++.++||+++|+.+|||++.. +...++..+.|++-+|...
T Consensus 229 sL~LLg~l~--~id~~~l~~WL~~rQ~~~GGF~GR~------------nKl~D~CYSfW~~a~L~lL 281 (439)
T PLN02710 229 AMILINEVD--RLDLPSLINWVVFRQGVEGGFQGRT------------NKLVDGCYSFWQGGVFALL 281 (439)
T ss_pred HHHHcCCcc--ccCHHHHHHHHHHhcCcCCCcCCCC------------CCCCCchhhHHHHHHHHHH
Confidence 999988752 3457899999999999999999774 2344555666666655543
No 33
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=99.67 E-value=4.2e-15 Score=156.21 Aligned_cols=226 Identities=18% Similarity=0.147 Sum_probs=160.7
Q ss_pred HHHHHHHHHhhhheecCCCcee--ecCCCCchHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHhhcccCCCCCCccccCC
Q 006042 292 AFKKHLNRIADYIWLGEDGMKV--QTFGSQTWDTALGLQALMACNIADE-VESVLGKGHDYLKKAQIRDNPVGDYKGNFR 368 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~g~~~--~~~~s~vwdTal~~~AL~~ag~~~~-~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~ 368 (663)
.++++++++..| ...||.+- ..+.+.+|.|++++.+|.++..... ....++++++||.+.|..+ |+|....+
T Consensus 53 ~i~~g~~r~l~~--q~~dGsf~~w~~~~~s~wlTA~v~~~l~~a~~~~~v~~~~l~~a~~wL~~~Q~~d---G~f~e~~~ 127 (297)
T cd02896 53 YIRQGYQRQLSY--RKPDGSYAAWKNRPSSTWLTAFVVKVFSLARKYIPVDQNVICGSVNWLISNQKPD---GSFQEPSP 127 (297)
T ss_pred HHHHHHHHHHhc--cCCCCCccCCCCCCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCC---CeeCCCCC
Confidence 478888888887 45777541 2236789999999999987653211 1578999999999999876 78875432
Q ss_pred CCC---CCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchh
Q 006042 369 HFS---KGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASL 445 (663)
Q Consensus 369 ~~~---~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~ 445 (663)
-.. .||+.. ..++++.||+++.+|.+.+...+.. .....+.+.||++||.++|.. -
T Consensus 128 ~~~~~m~gg~~~-----~~~~~~lTA~vl~aL~~~~~~~~~~--~~~~~~~i~rA~~yL~~~~~~-~------------- 186 (297)
T cd02896 128 VIHREMTGGVEG-----SEGDVSLTAFVLIALQEARSICPPE--VQNLDQSIRKAISYLENQLPN-L------------- 186 (297)
T ss_pred ccChhccCCccc-----cCCCccchHHHHHHHHhhhcccccc--chhhHHHHHHHHHHHHHhccc-C-------------
Confidence 211 233321 1357889999999999876422100 012356899999999998864 0
Q ss_pred hhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCC--------
Q 006042 446 LLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWG-------- 517 (663)
Q Consensus 446 ~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg-------- 517 (663)
.+++.++.+..+|...+. +...++.++|.+.|+.||+|...|.
T Consensus 187 ------------------~~~Y~~Al~ayALal~~~-----------~~~~~a~~~L~~~~~~d~~~~~~~~~~~~~~~~ 237 (297)
T cd02896 187 ------------------QRPYALAITAYALALADS-----------PLSHAANRKLLSLAKRDGNGWYWWTIDSPYWPV 237 (297)
T ss_pred ------------------CChHHHHHHHHHHHHcCC-----------hhhHHHHHHHHHHhhhCCCcceeccCcCccCCC
Confidence 123346666677766542 2568899999999999998864221
Q ss_pred --Cc--chhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHH
Q 006042 518 --IC--FIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSL 593 (663)
Q Consensus 518 --~~--~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL 593 (663)
.. .+-.|++||.++...|. ...+.++++||.++||.+|||..+ =.|..||.||
T Consensus 238 ~~~~~~~vE~TAYALLall~~~~----~~~a~~iv~WL~~qr~~~Ggf~sT-------------------QdTvval~AL 294 (297)
T cd02896 238 PGPSAITVETTAYALLALLKLGD----IEYANPIARWLTEQRNYGGGFGST-------------------QDTVVALQAL 294 (297)
T ss_pred CCCchhhhHHHHHHHHHHHhcCC----chhHHHHHHHHHhcCCCCCCeehH-------------------HHHHHHHHHH
Confidence 11 34579999999998874 347889999999999999999854 1689999999
Q ss_pred HH
Q 006042 594 IS 595 (663)
Q Consensus 594 ~~ 595 (663)
..
T Consensus 295 ~~ 296 (297)
T cd02896 295 AE 296 (297)
T ss_pred hc
Confidence 74
No 34
>PLN02710 farnesyltranstransferase subunit beta
Probab=99.67 E-value=4e-15 Score=160.70 Aligned_cols=210 Identities=16% Similarity=0.160 Sum_probs=155.1
Q ss_pred ccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCccccccccccccccc
Q 006042 387 SDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYV 466 (663)
Q Consensus 387 ~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~ 466 (663)
.+.|-.+|.+|..++. +++++..++.++||.++|++ ||||+..+. +.++.
T Consensus 72 ~~~~Yw~L~sL~lLg~--------~l~~~~~~~ii~~l~~cQ~~-dGGFgg~pg---------------------~~~hl 121 (439)
T PLN02710 72 PWLCYWILHSIALLGE--------SLDDELENDTIDFLSRCQDP-NGGYGGGPG---------------------QLPHL 121 (439)
T ss_pred HHHHHHHHHHHHHhCC--------cccHHHHHHHHHHHHHhcCC-CcCCCCCCC---------------------CCccH
Confidence 4678888888887753 24556678899999999999 999975432 12466
Q ss_pred CcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccC-CCCcchhHHHHHHHHHHHcCCCcCChHHHH
Q 006042 467 ECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGN-WGICFIYGTCFALGGLQVAGKTYNNCLAIR 545 (663)
Q Consensus 467 ~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~-wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ 545 (663)
-.|..++.+|..++.. ... ..+ ..++.++||.+.|++||+|.+. +|..++-.|.+|+..+..++.. ....++
T Consensus 122 ~~TY~Av~~L~iLg~~-~~l--~~I--dr~~l~~fl~s~q~~dGgF~~~~~gE~D~R~tYcAlail~LL~~l--~~~~~e 194 (439)
T PLN02710 122 ATTYAAVNTLVTIGGE-RAL--SSI--NREKLYTFLLRMKDPSGGFRMHDGGEMDVRACYTAISVASLLNIL--DDELVK 194 (439)
T ss_pred HHHHHHHHHHHHcCCc-hhh--ccc--CHHHHHHHHHHcCCCCCCcccCCCCCCCcCCcHHHHHHHHHhCcC--chhhHH
Confidence 6788899999888742 001 012 2478999999999999999863 4444455555666667777764 356789
Q ss_pred HHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCC
Q 006042 546 RAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQ 625 (663)
Q Consensus 546 ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~ 625 (663)
+.++||+++|+.||||+.. |+.+++...|.||+.+|...+..+. ..+++.++||+++|..+|||..
T Consensus 195 ~~~~~I~scQ~~dGGF~g~------------P~~EaH~gyTfcavAsL~LLg~l~~--id~~~l~~WL~~rQ~~~GGF~G 260 (439)
T PLN02710 195 GVGDYILSCQTYEGGIGGE------------PGAEAHGGYTFCGLAAMILINEVDR--LDLPSLINWVVFRQGVEGGFQG 260 (439)
T ss_pred HHHHHHHHhCCCCCCCCCC------------CCCCCchHHHHHHHHHHHHcCCccc--cCHHHHHHHHHHhcCcCCCcCC
Confidence 9999999999999999976 4678999999999999999887643 2488999999999999999874
Q ss_pred CccccccccccccccCCccchHHHHHHHHHH
Q 006042 626 QEIMGVFMRNCMLHYAEYRNIFPLRALAEYR 656 (663)
Q Consensus 626 ~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~ 656 (663)
.. +-.+..||- +|.+-+|+.-.
T Consensus 261 R~--nKl~D~CYS-------fW~~a~L~lL~ 282 (439)
T PLN02710 261 RT--NKLVDGCYS-------FWQGGVFALLQ 282 (439)
T ss_pred CC--CCCCCchhh-------HHHHHHHHHHH
Confidence 42 345555543 45555555443
No 35
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.66 E-value=2.7e-16 Score=140.78 Aligned_cols=110 Identities=32% Similarity=0.530 Sum_probs=87.7
Q ss_pred HHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHH--HHHHHhhcCCCCCccCCCcCCCCccccCC
Q 006042 499 VHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRA--VDFLLNAQSDDGGWGESYKSCPNKIYTPL 576 (663)
Q Consensus 499 v~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra--~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~ 576 (663)
|+||++.|++||+|...+....++.|++|+.+|..+|... ..+++ ++||+++|++||||+....
T Consensus 1 v~~L~~~Q~~dGgw~~~~~~~~~~~T~~al~aL~~~g~~~----~~~~~~~~~~L~~~q~~dGg~~~~~~---------- 66 (113)
T PF13249_consen 1 VDWLLSRQNPDGGWGGFGGPSDVWDTAFALLALAALGEEP----DRDRAAAVEWLLSQQNPDGGWGSNPD---------- 66 (113)
T ss_dssp HHHHHHHB-TTSSBBSSTS-BEHHHHHHHHHHHHHHTSHH----CHHHHHHHHHHHHHB-TTSGBBSSTT----------
T ss_pred CHhhHHHcCCCCCCcCCCCCCCHHHHHHHHHHHHHhCCcc----cHHHHHHHHHHHHhCCCCCCccCCCC----------
Confidence 6899999999999987656778999999999999999863 25566 9999999999999997631
Q ss_pred CCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCC
Q 006042 577 EGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFP 624 (663)
Q Consensus 577 ~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~ 624 (663)
+..+++..|++++.+|...+.... .+.++|+++||+++|++||+|.
T Consensus 67 -~~~~~~~~t~~~l~~l~~~~~~~~-~~~~~~a~~~l~~~Q~~dGg~~ 112 (113)
T PF13249_consen 67 -GGPPDVYTTYVALAALELLGRPDD-EEAVRKAVDWLLSCQNPDGGWG 112 (113)
T ss_dssp -TT-BSHHHHHHHHHHHHHHT-GGC-HTTHCCHHHHHHHTB-TTSSB-
T ss_pred -CCCccHHHHHHHHHHHHHcCCCcc-cHHHHHHHHHHHHhcCCCCCCC
Confidence 345778899999999988877532 2479999999999999999996
No 36
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=99.66 E-value=1.9e-16 Score=141.80 Aligned_cols=109 Identities=36% Similarity=0.491 Sum_probs=85.2
Q ss_pred HHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHH--H
Q 006042 421 VNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVK--A 498 (663)
Q Consensus 421 ~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~r--a 498 (663)
|+||+++||+ ||||+.+ . ..+.+..|+.+|.+|..++... ..++ +
T Consensus 1 v~~L~~~Q~~-dGgw~~~-~---------------------~~~~~~~T~~al~aL~~~g~~~----------~~~~~~~ 47 (113)
T PF13249_consen 1 VDWLLSRQNP-DGGWGGF-G---------------------GPSDVWDTAFALLALAALGEEP----------DRDRAAA 47 (113)
T ss_dssp HHHHHHHB-T-TSSBBSS-T---------------------S-BEHHHHHHHHHHHHHHTSHH----------CHHHHHH
T ss_pred CHhhHHHcCC-CCCCcCC-C---------------------CCCCHHHHHHHHHHHHHhCCcc----------cHHHHHH
Confidence 6899999999 9999864 1 2357889999999999987542 1344 5
Q ss_pred HHHHHHhcccCCCcccCC--CCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccC
Q 006042 499 VHYIEDEQTADGSWYGNW--GICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGE 563 (663)
Q Consensus 499 v~~L~~~Q~~DGsw~g~w--g~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~ 563 (663)
++||+++|++||+|.... ...++|.|+.++.+|..++... ..+.++|+++||+++|++||||+.
T Consensus 48 ~~~L~~~q~~dGg~~~~~~~~~~~~~~t~~~l~~l~~~~~~~-~~~~~~~a~~~l~~~Q~~dGg~~y 113 (113)
T PF13249_consen 48 VEWLLSQQNPDGGWGSNPDGGPPDVYTTYVALAALELLGRPD-DEEAVRKAVDWLLSCQNPDGGWGY 113 (113)
T ss_dssp HHHHHHHB-TTSGBBSSTTTT-BSHHHHHHHHHHHHHHT-GG-CHTTHCCHHHHHHHTB-TTSSB-S
T ss_pred HHHHHHhCCCCCCccCCCCCCCccHHHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhcCCCCCCCc
Confidence 999999999999998764 3457889999999999998864 358999999999999999999973
No 37
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-I s are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-I ). GGTase-I prenylates the cysteine in the terminal sequence, "CAAX" when X is Leu or Phe. Substrates for GTTase-I include the gamma subunit of neural G-proteins and several Ras-related G-proteins. PTases are heterodimeric with both alpha and beta subunits r
Probab=99.65 E-value=1.2e-14 Score=152.92 Aligned_cols=241 Identities=15% Similarity=0.108 Sum_probs=163.6
Q ss_pred HHHHHHHHHhhhhe--ecCCCceeec------------CCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccC
Q 006042 292 AFKKHLNRIADYIW--LGEDGMKVQT------------FGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRD 357 (663)
Q Consensus 292 ~~~~~~~~l~~~~~--~~~~g~~~~~------------~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~ 357 (663)
..++.+++|..... ..++|..... ..++++-|-+++.+|.-.|...+ .-..++.++||.+.|..+
T Consensus 50 ~r~~~i~~i~~~q~~~~~~~GgF~~~~~~~~~~~~~~~~~~~l~~ty~Al~~L~lL~~~~~-~idr~~i~~~l~~~q~~d 128 (307)
T cd02895 50 EKDDIIEWIYSLQVLSNLPRGGFRGSSTLGLPGTASKYDTGNLAMTYFALLSLLILGDDLS-RVDRKAILNFLSKLQLPD 128 (307)
T ss_pred HHHHHHHHHHHHhcccCCCCCCCCCCCCCccccccccCCcccHHHHHHHHHHHHHhCCchh-hhhHHHHHHHHHHhCCCC
Confidence 35667777777631 0456543221 13677888888888877663221 123578999999999876
Q ss_pred CCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccc
Q 006042 358 NPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAV 437 (663)
Q Consensus 358 ~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~ 437 (663)
|+|... .. ...+-+|+--|-.|+.++..++..+. .....++.++||.++|+. ||||+.
T Consensus 129 ---GgF~~~--------~~---~~~~e~d~r~ty~Av~~l~lL~~~~~-------~~~d~~~li~~l~s~Q~~-dGGF~~ 186 (307)
T cd02895 129 ---GSFGSV--------LD---SEGGENDMRFCYCAVAICYMLDDWSE-------EDIDKEKLIDYIKSSQSY-DGGFGQ 186 (307)
T ss_pred ---CCccCC--------cC---CcCCCccHHHHHHHHHHHHHhCCCcc-------ccccHHHHHHHHHHccCC-CCCccC
Confidence 665421 00 01233566667777777766653210 112468899999999999 999974
Q ss_pred cccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCC
Q 006042 438 WERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWG 517 (663)
Q Consensus 438 ~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg 517 (663)
.+.. .++...|..++.+|..++.... . ....+++.++||.++|+.+|+|.|+-+
T Consensus 187 ~~~~---------------------Esh~g~Tyca~asL~lL~~~~~-~----~~~~~~~l~~wL~~rQ~~~GGF~gr~~ 240 (307)
T cd02895 187 GPGL---------------------ESHGGSTFCAIASLSLLGKLEE-L----SEKFLERLKRWLVHRQVSGTGFNGRPN 240 (307)
T ss_pred CCCC---------------------CccccHHHHHHHHHHHcCCccc-c----ccccHHHHHHHHHHhcCCCCCcCCCCC
Confidence 4321 1344567778888877765310 0 012578999999999999999988654
Q ss_pred -CcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcC-CCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHH
Q 006042 518 -ICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQS-DDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLIS 595 (663)
Q Consensus 518 -~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~-~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ 595 (663)
..+++-|++++.+|..++.. ....+++..+||+++|+ .+||+... |+..+++.+|.|+|.+|..
T Consensus 241 k~~D~cysfw~~a~L~iL~~~--~~id~~~l~~~l~~~q~~~~GGf~~~------------p~~~~D~~ht~~~la~Lsl 306 (307)
T cd02895 241 KPADTCYSFWVGASLKLLDAF--QLIDFEKNRNYLLSTQQSLVGGFAKN------------PDSHPDPLHSYLGLAALSL 306 (307)
T ss_pred CCCccchhhHHHHHHHHcCcc--cccCHHHHHHHHHHHcCCCCCCcCCC------------CCCCCChhHHHHHHHHHHh
Confidence 34566677888889888764 24567899999999885 58999976 4668999999999999863
No 38
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.9e-15 Score=146.00 Aligned_cols=173 Identities=27% Similarity=0.314 Sum_probs=135.8
Q ss_pred HHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHH
Q 006042 417 LYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIV 496 (663)
Q Consensus 417 i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~ 496 (663)
-++.+.|+++||+. +|||+.++... |+.-.|-.+++.|+.+..... -.++
T Consensus 68 ~eeiv~~v~~C~~~-~GGfa~~~Ghd---------------------~hll~TlsAvQiL~~ydsi~~--------~d~d 117 (329)
T KOG0366|consen 68 REEIVSFVLSCQHE-DGGFAGCPGHD---------------------PHLLYTLSAVQILALYDSINV--------LDRD 117 (329)
T ss_pred HHHHHHHHHheecC-CCCcCCCCCCC---------------------hHHHHHHHHHHHHHHHccccc--------ccHH
Confidence 46779999999998 99999777543 355568889999988865421 1356
Q ss_pred HHHHHHHHhcccCCCccc-CCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccC
Q 006042 497 KAVHYIEDEQTADGSWYG-NWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTP 575 (663)
Q Consensus 497 rav~~L~~~Q~~DGsw~g-~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~ 575 (663)
+-+.|+...|++||||.| .||.-.+--+..|+.+|+.+|.. +...+++|++|++++-|-|||||-.
T Consensus 118 ~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~l--d~~nve~aVd~~~~CyN~DGGFG~~----------- 184 (329)
T KOG0366|consen 118 KVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKL--DTINVEKAVDFVLSCYNFDGGFGCR----------- 184 (329)
T ss_pred HHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhH--HHhhHHHHHHHHHhhcccCCCcCCC-----------
Confidence 789999999999999997 68876665566688888888876 4778999999999999999999976
Q ss_pred CCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccccccc
Q 006042 576 LEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCM 637 (663)
Q Consensus 576 ~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~ 637 (663)
||.+|+..+....+-||..++..+.. ..+..-.||.++|.+.||-.... --.|..||
T Consensus 185 -pGaESHagqifcCvgaLai~~~L~~v--d~d~lgwwlceRQ~~sGGLNGRp--eKlpDVCY 241 (329)
T KOG0366|consen 185 -PGAESHAGQIFCCVGALAITGKLHLV--DRDLLGWWLCERQLPSGGLNGRP--EKLPDVCY 241 (329)
T ss_pred -CCcccccceehhhHHHHHHccchhhc--CHHHHHHHHHhccCCCCCCCCCc--ccCcchhh
Confidence 57889988887888888888877532 34667889999999999875431 12666664
No 39
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=99.59 E-value=1.7e-13 Score=143.94 Aligned_cols=222 Identities=20% Similarity=0.182 Sum_probs=150.8
Q ss_pred HHHHHHHHhhhheecCCCceee--cC--CCCchHHHHHHHHHHHcCC--CCchHHHHHHHHHHHHhhcccCCCCCCcccc
Q 006042 293 FKKHLNRIADYIWLGEDGMKVQ--TF--GSQTWDTALGLQALMACNI--ADEVESVLGKGHDYLKKAQIRDNPVGDYKGN 366 (663)
Q Consensus 293 ~~~~~~~l~~~~~~~~~g~~~~--~~--~s~vwdTal~~~AL~~ag~--~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~ 366 (663)
++++++++..+ ...||.+-. .. .+.+|-|++++.+|.+++. ..+ +..|+++++||.+.|..+ |.|...
T Consensus 51 l~~g~~~~~~~--q~~dGsf~~w~~~~~~~~~wlTa~v~~~L~~a~~~~~v~-~~~i~ra~~wL~~~Q~~d---G~f~~~ 124 (292)
T cd02897 51 LRTGYQRQLTY--KHSDGSYSAFGESDKSGSTWLTAFVLKSFAQARPFIYID-ENVLQQALTWLSSHQKSN---GCFREV 124 (292)
T ss_pred HHHHHHHHHhc--cCCCCCeecccCCCCCcchhhHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHhcCCC---CCCCCC
Confidence 56666666666 467775422 12 5688999999999998752 222 578999999999999876 666521
Q ss_pred CCCCCCCcccCccCCCC-CCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchh
Q 006042 367 FRHFSKGAWTFSDQDHG-WQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASL 445 (663)
Q Consensus 367 ~~~~~~GgW~fs~~~~~-~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~ 445 (663)
-+ +-......+ -++++.||+++.+|.+.+. +.+.+.++++++||.+.|.+ .
T Consensus 125 ~~------~~~~~~~~~~~~~~~~TA~vl~aL~~~g~--------~~~~~~i~~a~~yL~~~~~~-----~--------- 176 (292)
T cd02897 125 GR------VFHKAMQGGVDDEVALTAYVLIALLEAGL--------PSERPVVEKALSCLEAALDS-----I--------- 176 (292)
T ss_pred Cc------ccChhhcCCCCCCcchHHHHHHHHHhcCC--------ccccHHHHHHHHHHHHhccc-----C---------
Confidence 11 101000001 1346789999999988653 12457899999999987764 0
Q ss_pred hhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccC----------
Q 006042 446 LLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGN---------- 515 (663)
Q Consensus 446 ~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~---------- 515 (663)
..++.|+.++.+|...+. +. .+.+-+.+.++...++.+|.|...
T Consensus 177 ------------------~~~y~~al~a~AL~~~~~--~~------~~~~~~~l~~~~~~~~~~~~W~~~~~~~~~~~~~ 230 (292)
T cd02897 177 ------------------SDPYTLALAAYALTLAGS--EK------RPEALKKLDELAISEDGTKHWSRPPPSEEGPSYY 230 (292)
T ss_pred ------------------CCHHHHHHHHHHHHHcCC--cc------HHHHHHHHHHHHhccCCCCCCCcCCCcccccccC
Confidence 134457888888887762 21 123344455566666677778521
Q ss_pred -CC-CcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHH
Q 006042 516 -WG-ICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSL 593 (663)
Q Consensus 516 -wg-~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL 593 (663)
++ ...+-.|+++|++|...+.+ ..+.+.++++||.++|++||||+.+ -.|++||+||
T Consensus 231 ~~~~~~~ve~TAyaLlall~~~~~--~~~~~~~~v~WL~~~q~~~Ggf~sT-------------------Qdt~~al~AL 289 (292)
T cd02897 231 WQAPSAEVEMTAYALLALLSAGGE--DLAEALPIVKWLAKQRNSLGGFSST-------------------QDTVVALQAL 289 (292)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCc--cHhHHHHHHHHHHHcCCCCCCcccH-------------------HHHHHHHHHH
Confidence 11 11234699999999988742 4688899999999999999999965 1799999999
Q ss_pred HH
Q 006042 594 IS 595 (663)
Q Consensus 594 ~~ 595 (663)
..
T Consensus 290 ~~ 291 (292)
T cd02897 290 AK 291 (292)
T ss_pred Hc
Confidence 74
No 40
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.58 E-value=3.6e-13 Score=140.54 Aligned_cols=257 Identities=23% Similarity=0.190 Sum_probs=172.1
Q ss_pred CCchHHHHHHHHHHHcCCCC-----chHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHH
Q 006042 318 SQTWDTALGLQALMACNIAD-----EVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAE 392 (663)
Q Consensus 318 s~vwdTal~~~AL~~ag~~~-----~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 392 (663)
|..+-..++...+...+... +....|++++++|.+.|..+ |+|.. |+ +...++++.|++
T Consensus 21 s~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~Q~~d---Ggf~~---------w~----~~~~~~~~~Ta~ 84 (282)
T cd02891 21 SRAAPNLYVLKYLDATGQLTPEIREKALEYIRKGYQRLLTYQRSD---GSFSA---------WG----NSDSGSTWLTAY 84 (282)
T ss_pred HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHhhcCCC---CCccc---------cC----CCCCCchHHHHH
Confidence 33344444444455555432 35778999999999999876 55531 11 112467899999
Q ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHH
Q 006042 393 GLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASA 472 (663)
Q Consensus 393 al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~ 472 (663)
++.+|..+.+. + .++++.++|+++||.+.|++ ||+|........... + ..+.+..+.|+++
T Consensus 85 ~~~~L~~a~~~-----~-~v~~~~i~ra~~~L~~~q~~-~g~~~~~~~~~~~~~---------~---~~~~~~~~~tA~a 145 (282)
T cd02891 85 VVKFLSQARKY-----I-DVDENVLARALGWLVPQQKE-DGSFRELGPVIHREM---------K---GGVDDSVSLTAYV 145 (282)
T ss_pred HHHHHHHHHHc-----C-CCCHHHHHHHHHHHHhccCC-CCCcCCCCCccCHhh---------c---CCcCCCcchHHHH
Confidence 99999987642 2 36788999999999999999 999976543221100 0 1123456789999
Q ss_pred HHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHH
Q 006042 473 IEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLL 552 (663)
Q Consensus 473 L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll 552 (663)
+.+|...+... ...+.++++||.+.+.. ...+|+.+....+|...|. .+...+.++-|.
T Consensus 146 l~~L~~~g~~~--------~~~~~~a~~~L~~~~~~---------~~~~~~~a~la~al~~~g~----~~~~~~~l~~l~ 204 (282)
T cd02891 146 LIALAEAGKAC--------DASIEKALAYLETQLDG---------LLDPYALAILAYALALAGD----STRADEALKKLL 204 (282)
T ss_pred HHHHHHhcccc--------hHHHHHHHHHHHHhccc---------CCChHHHHHHHHHHHHcCc----cHHHHHHHHHHH
Confidence 99999876531 35789999999998754 2356888888888888875 344556666666
Q ss_pred hhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCcccccc
Q 006042 553 NAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVF 632 (663)
Q Consensus 553 ~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f 632 (663)
+.-...+++... . ...+.. .+....+..|+++|++....+. .+...+.++||++++..+|+|...
T Consensus 205 ~~~~~~~~~~~~-~---~~~~~~-~~s~~~~~a~a~all~~~~~~~----~~~~~~~~~~L~~~~~~~~~~~sT------ 269 (282)
T cd02891 205 EAAREKGGTAHW-S---LSWPGD-YGSSLRVEATAYALLALLKLGD----LEEAGPIAKWLAQQRNSGGGFLST------ 269 (282)
T ss_pred HHhhhcCCcccc-c---CCCCCC-CCchhhHHHHHHHHHHHHhcCC----hhhHHHHHHHHHHcCCCCCCcccH------
Confidence 655444443211 0 000100 1234556788999999876541 235788999999988888899765
Q ss_pred ccccccccCCccchHHHHHHHHH
Q 006042 633 MRNCMLHYAEYRNIFPLRALAEY 655 (663)
Q Consensus 633 ~~~~~~~y~~y~~~~pl~AL~~y 655 (663)
+.+++.|+||+.|
T Consensus 270 ----------q~t~~al~AL~~y 282 (282)
T cd02891 270 ----------QDTVVALQALAAY 282 (282)
T ss_pred ----------HHHHHHHHHHHhC
Confidence 4678999999876
No 41
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.54 E-value=2.2e-15 Score=134.23 Aligned_cols=107 Identities=36% Similarity=0.570 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCcccc
Q 006042 495 IVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYT 574 (663)
Q Consensus 495 i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~ 574 (663)
|+++++||++.|++||||.+.++. ..+.|.+++.+|...+.. ...+.|+|+++||+++|++||||+...
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~~-~~~~t~~~~~al~~~~~~-~~~~ai~ka~~~l~~~Q~~dG~w~~~~--------- 69 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWGS-DVFVTAALILALAAAGDA-AVDEAIKKAIDWLLSHQNPDGGWGYSG--------- 69 (109)
T ss_dssp -----------------------------------------TS--SSBSSHHHHHHHHH---TTS--S-TS---------
T ss_pred Cccccccccccccccccccccccc-cccccccccccccccCCC-CcHHHHHHHHHHHHHhcCCCCCCCCcC---------
Confidence 689999999999999999887763 467888888999988865 478899999999999999999999652
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCc
Q 006042 575 PLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQL 618 (663)
Q Consensus 575 ~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~ 618 (663)
.+..+.|+.++.+|...+... +.+.++|+++||+++|.
T Consensus 70 -----~~~~~~t~~~~~~l~~~~~~~-~~~~~~r~~~wi~~~~~ 107 (109)
T PF13243_consen 70 -----GEYVSMTAAAIAALALAGVYP-DDEAVERGLEWILSHQL 107 (109)
T ss_dssp -------HHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHH--
T ss_pred -----CCCHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHccC
Confidence 233445666666655554433 33579999999999875
No 42
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=99.48 E-value=9.6e-15 Score=130.05 Aligned_cols=105 Identities=28% Similarity=0.531 Sum_probs=45.8
Q ss_pred ChHHHHHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceeh
Q 006042 1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFG 80 (663)
Q Consensus 1 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~ 80 (663)
|+++++||++.|++||+|.++.+++.+.|...+.+++.+|.. . ..+.++++++||+++|++||||+.. +..+++.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~~~~~~t~~~~~al~~~~~~--~-~~~ai~ka~~~l~~~Q~~dG~w~~~--~~~~~~~ 75 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWGSDVFVTAALILALAAAGDA--A-VDEAIKKAIDWLLSHQNPDGGWGYS--GGEYVSM 75 (109)
T ss_dssp ----------------------------------------TS----SSBSSHHHHHHHHH---TTS--S-T--S--HHHH
T ss_pred CccccccccccccccccccccccccccccccccccccccCCC--C-cHHHHHHHHHHHHHhcCCCCCCCCc--CCCCHHH
Confidence 689999999999999999999998899999999999999842 2 2456899999999999999999955 4555788
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhc
Q 006042 81 TVFSYLCMRLLGLGPNDGENNACARARKWIRDH 113 (663)
Q Consensus 81 t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~ 113 (663)
|+.++.+|.+.+..+++ +.++|+++||+++
T Consensus 76 t~~~~~~l~~~~~~~~~---~~~~r~~~wi~~~ 105 (109)
T PF13243_consen 76 TAAAIAALALAGVYPDD---EAVERGLEWILSH 105 (109)
T ss_dssp HHHHHHHHHHHHTT--H---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCC---HHHHHHHHHHHHc
Confidence 88899999999999876 4899999999987
No 43
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.9e-13 Score=136.10 Aligned_cols=178 Identities=20% Similarity=0.229 Sum_probs=136.7
Q ss_pred HHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHH
Q 006042 416 RLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFI 495 (663)
Q Consensus 416 ~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i 495 (663)
.-++.+.+++++|++ +|||+.++... ++...|..+|.+|+.+...+--. ...-
T Consensus 76 ~~er~i~~v~~~~~~-~G~f~~~~g~~---------------------~hL~sT~~Ai~~L~~~d~~~~~~-----~idr 128 (342)
T COG5029 76 DKERKISFVLGCVGP-SGGFGGGPGQD---------------------SHLASTVFAIQSLAMLDSLDVLS-----RIDR 128 (342)
T ss_pred hhhhhheeeeeeecC-CCCcCCCCccc---------------------hhHHHHHHHHHHHHHhccccccc-----hhhH
Confidence 346778999999999 99998665432 34556889999999886431111 1123
Q ss_pred HHHHHHHHHhcccCCCccc-CCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCcccc
Q 006042 496 VKAVHYIEDEQTADGSWYG-NWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYT 574 (663)
Q Consensus 496 ~rav~~L~~~Q~~DGsw~g-~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~ 574 (663)
++-.+||...|+|||+|.+ .+|...+-....|+..|..+|.. +.+..+-+++||+++||-|||||..
T Consensus 129 ~~l~~fi~~lk~pdGsF~~~~~gevDtr~~Y~al~ilsllg~~--~~~~~e~~vdyl~kCqnyeGGFg~~---------- 196 (342)
T COG5029 129 DSLASFISGLKNPDGSFRSDLEGEVDTRFLYIALSILSLLGDL--DKELFEGAVDYLKKCQNYEGGFGLC---------- 196 (342)
T ss_pred HHHHHHHHhccCCCCceecccCCcchHHHHHHHHHHHHHHhhc--chhhhHHHHHHHHHhhccCCcccCC----------
Confidence 5789999999999999986 56766665666788888888854 5788889999999999999999965
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccccccc
Q 006042 575 PLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNCM 637 (663)
Q Consensus 575 ~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~ 637 (663)
|+.+++..+|..||.+|..++..+... .+++.+.||.++|.+.||+...+ --++..||
T Consensus 197 --p~aEaHag~tFcalaalalL~~Ld~ls-~~E~l~~Wl~~RQ~ssgGl~GR~--nKl~D~CY 254 (342)
T COG5029 197 --PYAEAHAGYTFCALAALALLGKLDKLS-DVEKLIRWLAERQLSSGGLNGRS--NKLVDTCY 254 (342)
T ss_pred --CchhhccchHHHHHHHHHHHhcccccc-hHHHHHHHHHHcccccCCcCCCc--ccCccchh
Confidence 356888899999999998888775433 38999999999999999886442 22666664
No 44
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.7e-12 Score=124.52 Aligned_cols=261 Identities=17% Similarity=0.138 Sum_probs=168.6
Q ss_pred HHHHHHHHHhhhheecCCCce-eecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCC
Q 006042 292 AFKKHLNRIADYIWLGEDGMK-VQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHF 370 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~g~~-~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~ 370 (663)
...||+++|+.+-. ..+... .-...-.+-..-+.+.||.-.|..+. -.-++.+.|+.++|..+ |+|..
T Consensus 19 l~dkH~~yI~~~~~-kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~--~~~eeiv~~v~~C~~~~---GGfa~----- 87 (329)
T KOG0366|consen 19 LKDKHARYIESYGK-KKDSFEYCLTEHLRMSGIYWGLTALDLLGQLER--MSREEIVSFVLSCQHED---GGFAG----- 87 (329)
T ss_pred HHHHHHHHHHHhcc-ccchHHHHHHhHhhhcchhhhhhHHHHhcccch--hhHHHHHHHHHheecCC---CCcCC-----
Confidence 46799999887522 111110 00001111122344556655555443 22577889999999854 55431
Q ss_pred CCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhc
Q 006042 371 SKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWL 450 (663)
Q Consensus 371 ~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~ 450 (663)
....-|.+-.|-.|++-|......+ .-...+.+.|+...|++ ||+|..-
T Consensus 88 ---------~~Ghd~hll~TlsAvQiL~~ydsi~---------~~d~d~v~~yi~gLq~e-dGsF~gD------------ 136 (329)
T KOG0366|consen 88 ---------CPGHDPHLLYTLSAVQILALYDSIN---------VLDRDKVASYIKGLQQE-DGSFSGD------------ 136 (329)
T ss_pred ---------CCCCChHHHHHHHHHHHHHHHcccc---------cccHHHHHHHHHhhcCc-CCcccCC------------
Confidence 1122355667888888776654322 12246678999999999 9999521
Q ss_pred CcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCC-cchhHHHHHHH
Q 006042 451 NPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGI-CFIYGTCFALG 529 (663)
Q Consensus 451 ~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~-~~~Y~T~~aL~ 529 (663)
.++ .+|..++.|.-.+|..|..+.. -.+++|++|+.++.|-||+|+-..|. ++.-.....+.
T Consensus 137 ----~wG--EvDTRfs~~av~~L~lLg~ld~-----------~nve~aVd~~~~CyN~DGGFG~~pGaESHagqifcCvg 199 (329)
T KOG0366|consen 137 ----IWG--EVDTRFSYCAVACLALLGKLDT-----------INVEKAVDFVLSCYNFDGGFGCRPGAESHAGQIFCCVG 199 (329)
T ss_pred ----ccc--ccchhhhHHHHHHHHHHhhHHH-----------hhHHHHHHHHHhhcccCCCcCCCCCcccccceehhhHH
Confidence 122 2344455554444444444332 25899999999999999999865553 33333455777
Q ss_pred HHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHH
Q 006042 530 GLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRG 609 (663)
Q Consensus 530 aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~ 609 (663)
+|+..|... .-..++.-.||..+|-+.||-.+.+. .-+++....|+|-.|...|+..-. .-++-
T Consensus 200 aLai~~~L~--~vd~d~lgwwlceRQ~~sGGLNGRpe------------KlpDVCYSwWvlsSL~iigrl~wI--d~ekL 263 (329)
T KOG0366|consen 200 ALAITGKLH--LVDRDLLGWWLCERQLPSGGLNGRPE------------KLPDVCYSWWVLSSLAIIGRLHWI--DREKL 263 (329)
T ss_pred HHHHccchh--hcCHHHHHHHHHhccCCCCCCCCCcc------------cCcchhhHHHHHhHHHHhhhhhhc--cHHHH
Confidence 888888763 33346778899999999999887642 246777889999999999987532 36788
Q ss_pred HHHHHhcCc-cCCCCCCCc
Q 006042 610 VKLLINSQL-ENGDFPQQE 627 (663)
Q Consensus 610 i~~L~~~Q~-~dG~w~~~~ 627 (663)
.+|++++|. ++|||.+..
T Consensus 264 ~~FIl~cQd~~~GGfsDRp 282 (329)
T KOG0366|consen 264 TKFILACQDEETGGFSDRP 282 (329)
T ss_pred HHHHHhcCCCCCCCcCCCC
Confidence 999999998 779997654
No 45
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=8.3e-12 Score=124.33 Aligned_cols=298 Identities=19% Similarity=0.176 Sum_probs=178.8
Q ss_pred HHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHH-cCCC--CchH-HHHHHHHHHHHhhcccCCCCCC--ccc
Q 006042 292 AFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMA-CNIA--DEVE-SVLGKGHDYLKKAQIRDNPVGD--YKG 365 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~-ag~~--~~~~-~~l~ka~~wL~~~Q~~~~~~G~--~~~ 365 (663)
..+||+..+++++.+-+ +++.+ -||.-.++|+.. +|++ +..+ ---+.-++|+.+.|......+. ..
T Consensus 12 ~~~kH~~ff~RhL~llP-----~~y~s--hd~~R~tiafFaisGLd~L~~ld~v~k~d~i~Wiy~~~v~~~dr~~~k~~- 83 (347)
T KOG0367|consen 12 ERKKHIKFFERHLQLLP-----SPYQS--HDTNRLTIAFFAISGLDLLDALDSVDKDDIIEWIYKLQVTPTDRTNLKIC- 83 (347)
T ss_pred hHHHHHHHHHHHHHhCC-----Ccccc--cccchHHHHHHHHcchhhhhhhhccchhHHHHHHHhceeccccCCCceee-
Confidence 68899999999876543 33323 365555555544 4543 1111 1135578999999986410111 00
Q ss_pred cCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchh
Q 006042 366 NFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASL 445 (663)
Q Consensus 366 ~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~ 445 (663)
-++....+.-++++.....|....|-.++..|..++. ...+-.-+..++++..+|.+ ||+|..-...
T Consensus 84 GF~Gsr~~~~p~~~~~~~~~~lA~Ty~sl~~L~~lGd--------dLsrlDrksil~~v~~~Q~~-dGsF~~~~~G---- 150 (347)
T KOG0367|consen 84 GFRGSRSMNIPIATNTYNEPHLAMTYTSLACLVILGD--------DLSRLDRKSILRFVSACQRP-DGSFVSINVG---- 150 (347)
T ss_pred eeeeeccccCCCCCCCCcchhHHHHHHHHHHHHHHcc--------hHhhhhHHHHHHHHHHhcCC-CCceeecCCC----
Confidence 0122223344554433445655556666655555542 22222234558899999999 9999633211
Q ss_pred hhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCC-CCcchhHH
Q 006042 446 LLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNW-GICFIYGT 524 (663)
Q Consensus 446 ~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~w-g~~~~Y~T 524 (663)
+ ..|..+++|.+.+.-.|...... ..++++.||++.|+-||+|.... +..+.-.|
T Consensus 151 -------S------e~DmRFvYcA~aI~ymLd~~s~i-----------D~ek~~~yI~~~q~YdgGfg~~pg~EsHgG~T 206 (347)
T KOG0367|consen 151 -------S------ESDMRFVYCAVAICYMLDFWSGI-----------DKEKLIGYIRSSQRYDGGFGQHPGGESHGGAT 206 (347)
T ss_pred -------C------chhhHHHHHHHHHHHHhcccccc-----------CHHHHHHHHHHhhccccccccCCCCCCCcchh
Confidence 1 12446777877666666533322 24889999999999999997433 34555578
Q ss_pred HHHHHHHHHcCCCc----CChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCC
Q 006042 525 CFALGGLQVAGKTY----NNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQAD 600 (663)
Q Consensus 525 ~~aL~aL~~~g~~~----~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~ 600 (663)
.+|+.+|+..|... .+...++|.++||+.+|..+||+.+. +..++.|+||.--+......+
T Consensus 207 fCAlAsL~L~~~l~~e~l~~~~~~erlirWli~RQ~~sgGfqGR---------------~NKp~DTCYaFWigasLklL~ 271 (347)
T KOG0367|consen 207 FCALASLALMGKLIPEELSNTSKVERLIRWLIQRQVSSGGFQGR---------------TNKPVDTCYAFWIGASLKLLD 271 (347)
T ss_pred HHHHHHHHHHhhhhhhhhccccCHHHHHHHHHHHhhccCCcCCC---------------CCCCchhHHHHHHHHHHHHcc
Confidence 88999998887651 12334899999999999999999855 334456666654443332222
Q ss_pred CCc-HHHHHHHHHHHhcCccC-CCCCCCccccccccccccccCCccchHHHHHHHHHHHh
Q 006042 601 RDP-TPIHRGVKLLINSQLEN-GDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKR 658 (663)
Q Consensus 601 ~~~-~~v~r~i~~L~~~Q~~d-G~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~ 658 (663)
.++ ...++-.+||+++|.+- |||..-. +.+|.. |-.+|.+-||+.-..+
T Consensus 272 ~~~~~d~~~lr~fll~~Q~~~iGGFsK~P--~~~pD~-------~HsylG~~alal~ee~ 322 (347)
T KOG0367|consen 272 ADWLIDKQVLRKFLLSTQDKLIGGFSKWP--EEDPDL-------LHSYLGLAALALLEEK 322 (347)
T ss_pred chHhhhHHHHHHHHHHhhhhhcCcccCCC--ccCchH-------HHHHHHHHHHHHhcCC
Confidence 111 13456678999999876 8753211 223332 3346788888765543
No 46
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.9e-11 Score=123.06 Aligned_cols=213 Identities=21% Similarity=0.332 Sum_probs=145.7
Q ss_pred CCCchHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHH
Q 006042 317 GSQTWDTALGLQALMACNIAD-EVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLK 395 (663)
Q Consensus 317 ~s~vwdTal~~~AL~~ag~~~-~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 395 (663)
.++.=.|.+++++|.-.+.-+ ..+-.-+...+||...|.++ |+|.... .+-.|.+. +..
T Consensus 101 ~~hL~sT~~Ai~~L~~~d~~~~~~~idr~~l~~fi~~lk~pd---GsF~~~~--------------~gevDtr~---~Y~ 160 (342)
T COG5029 101 DSHLASTVFAIQSLAMLDSLDVLSRIDRDSLASFISGLKNPD---GSFRSDL--------------EGEVDTRF---LYI 160 (342)
T ss_pred chhHHHHHHHHHHHHHhccccccchhhHHHHHHHHHhccCCC---Cceeccc--------------CCcchHHH---HHH
Confidence 455567899999998765322 10122346789999999987 7765221 12223333 333
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHH
Q 006042 396 CVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEA 475 (663)
Q Consensus 396 aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~a 475 (663)
|+..+. +.| ..+.+..+-+++||.+|||= ||||+..+.. | ++...|-.+|.+
T Consensus 161 al~ils-----llg-~~~~~~~e~~vdyl~kCqny-eGGFg~~p~a------------E---------aHag~tFcalaa 212 (342)
T COG5029 161 ALSILS-----LLG-DLDKELFEGAVDYLKKCQNY-EGGFGLCPYA------------E---------AHAGYTFCALAA 212 (342)
T ss_pred HHHHHH-----HHh-hcchhhhHHHHHHHHHhhcc-CCcccCCCch------------h---------hccchHHHHHHH
Confidence 332221 011 13456678889999999999 9999875532 1 356678888888
Q ss_pred HHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCC--CcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHh
Q 006042 476 FMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWG--ICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLN 553 (663)
Q Consensus 476 L~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg--~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~ 553 (663)
|+.+++..+ ++ .+++-+.||..+|-+.|++.|+-. +.-.| .++++..|+..|... --.-++..+||+.
T Consensus 213 lalL~~Ld~------ls-~~E~l~~Wl~~RQ~ssgGl~GR~nKl~D~CY-s~WvlsSl~il~~~~--~in~e~L~~yiL~ 282 (342)
T COG5029 213 LALLGKLDK------LS-DVEKLIRWLAERQLSSGGLNGRSNKLVDTCY-SFWVLSSLAILGKLD--FINTEELTDYILD 282 (342)
T ss_pred HHHHhcccc------cc-hHHHHHHHHHHcccccCCcCCCcccCccchh-hhhhcchHHhcchhh--hcCHHHHHHHHHh
Confidence 888887633 22 378999999999999999988632 11223 367888888887542 3344577889999
Q ss_pred hcCC-CCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCC
Q 006042 554 AQSD-DGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQA 599 (663)
Q Consensus 554 ~Q~~-DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~ 599 (663)
+|.+ .||+... |+.++++.+|+++|.+|+..+..
T Consensus 283 c~q~~sGGfsdr------------p~~~~D~yHt~~~lagLsl~~~k 317 (342)
T COG5029 283 CQQETSGGFSDR------------PGEEPDVYHTCFGLAGLSLIEYK 317 (342)
T ss_pred hcccCCCCCCCC------------CcccchHHHHHHHHHHHHHhccC
Confidence 9988 7999876 47789999999999999977653
No 47
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.4e-10 Score=117.72 Aligned_cols=271 Identities=17% Similarity=0.186 Sum_probs=167.8
Q ss_pred HHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCC
Q 006042 293 FKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSK 372 (663)
Q Consensus 293 ~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~ 372 (663)
.+||+.+|.+.+...+.-...- ..|..|-.-+++.+|.-.|..-+ +...+++++||...|.++ |+|
T Consensus 74 r~kH~~YL~~~Lr~Lp~~~~~L-DASR~Wm~YWil~sl~lL~~~~d-d~v~~~~i~fL~~c~~Pe---GGf--------- 139 (423)
T KOG0365|consen 74 RQKHLMYLDKMLRQLPSQYTCL-DASRPWMCYWILNSLALLDEWLD-DDVKENAIDFLFTCQGPE---GGF--------- 139 (423)
T ss_pred HHHHHHHHHHHHHhCCCccccc-ccCcchhHHHHHHHHHHhcCcCC-HHHHHHHHHHHHhcCCCC---CCC---------
Confidence 5799999998876544332211 25778999999999887664322 467899999999999876 433
Q ss_pred CcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCc
Q 006042 373 GAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNP 452 (663)
Q Consensus 373 GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~ 452 (663)
...+..+|....|-.|+.||..++.... -..++ ..+-.+||.++.++ ||||......
T Consensus 140 -----gGGPGQl~HLA~TYAAVnaL~~~~~e~A---~~~In---R~~l~~fL~slK~~-dGgFrmh~~G----------- 196 (423)
T KOG0365|consen 140 -----GGGPGQLPHLAPTYAAVNALCLCGSEDA---YSSIN---REKLYQFLFSLKDP-DGGFRMHVEG----------- 196 (423)
T ss_pred -----CCCCccchhhhHHHHHHHHHHhcCcHHH---HHHhh---HHHHHHHHHHhcCC-CCCeEeecCC-----------
Confidence 2234667888999999999988764210 01122 35678999999999 9999755421
Q ss_pred ccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCc-chhHHHHHHHHH
Q 006042 453 VEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGIC-FIYGTCFALGGL 531 (663)
Q Consensus 453 ~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~-~~Y~T~~aL~aL 531 (663)
.+|...++|...+ +.+... +. ++-.+...+||.++|+-+|+++|..+.. +---|.+++.||
T Consensus 197 -------E~DvRs~YcA~sv----asllni-~~------deL~eG~~~wi~~CQtyEGG~GG~P~~EAHGGYTFCalAal 258 (423)
T KOG0365|consen 197 -------EVDVRSAYCALSV----ASLLNI-PM------DELFEGTLDWIASCQTYEGGFGGEPGVEAHGGYTFCALAAL 258 (423)
T ss_pred -------cchHHHHHHHHHH----HHHHCC-Cc------HHHHHHHHHHHHhcccccCCcCCCccccccCCeeHHHHHHH
Confidence 1233334333322 222221 21 2456778999999999999998765432 111245577777
Q ss_pred HHcCCCcCChHHHHHHHHHHHhhcC-CCCCccCCCcCCCCccccCCCCCCCcHHHHHHHH-HHHH-HcCCCCCC-cHHHH
Q 006042 532 QVAGKTYNNCLAIRRAVDFLLNAQS-DDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAV-LSLI-SAGQADRD-PTPIH 607 (663)
Q Consensus 532 ~~~g~~~~~~~~i~ra~~~Ll~~Q~-~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~AL-laL~-~ag~~~~~-~~~v~ 607 (663)
+.++.. +.-..++..+|..++|. ..|||.+....-.+ |..|--.....+| .+.. ..++.-.. --..+
T Consensus 259 alLn~~--d~ln~~~Ll~W~~~RQm~~E~GFqGRtNKLVD-------GCYSFWvga~~~il~~~~~~~~~s~~~~~F~~~ 329 (423)
T KOG0365|consen 259 ALLNEM--DQLNLEKLLEWAVRRQMRFEGGFQGRTNKLVD-------GCYSFWVGASAPILQAFYSSAGHSLEHLLFNKE 329 (423)
T ss_pred HHHhhh--hhhCHHHHHHHHHHhhhhhhccccccccchhh-------hhHHHHhcchHHHHHHHhcccccchhhhhcCHH
Confidence 777664 45678899999999998 58999876432111 2222211111222 2222 12221000 00134
Q ss_pred HHHHHHH-hcCccCCCCCCCc
Q 006042 608 RGVKLLI-NSQLENGDFPQQE 627 (663)
Q Consensus 608 r~i~~L~-~~Q~~dG~w~~~~ 627 (663)
...+|++ -+|.++||+.+..
T Consensus 330 ~LqeYIL~CcQ~~~GGlrDKP 350 (423)
T KOG0365|consen 330 ALQEYILLCCQSPSGGLRDKP 350 (423)
T ss_pred HHHHHHHhhccCCCCCccCCC
Confidence 4556655 6788999998764
No 48
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=99.27 E-value=5.9e-11 Score=121.20 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=108.6
Q ss_pred ccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCccccccccccccccc
Q 006042 387 SDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYV 466 (663)
Q Consensus 387 ~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~ 466 (663)
-+.|...++-|+.+-.. .+++.+.+++.||++||+++|++ ||||+.|...++ ++++++. |.|
T Consensus 43 N~aT~~e~~fLa~~y~~----t~d~~y~~A~~rgld~LL~aQyp-nGGWPQf~p~~~-~Y~~~IT----fND-------- 104 (290)
T TIGR02474 43 NGATVTEIRYLAQVYQQ----EKNAKYRDAARKGIEYLLKAQYP-NGGWPQFYPLKG-GYSDAIT----YND-------- 104 (290)
T ss_pred CccHHHHHHHHHHHHHh----cCchhHHHHHHHHHHHHHhhhCC-CCCcCcccCCcC-Ccccccc----cCc--------
Confidence 34577777777766431 13457889999999999999999 999998887664 5555553 322
Q ss_pred CcHHHHHHHHHHhhhhCC------CcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcch-----------h-------
Q 006042 467 ECTASAIEAFMLFKKLYP------HHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFI-----------Y------- 522 (663)
Q Consensus 467 ~~Ta~~L~aL~~~~~~~~------~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~-----------Y------- 522 (663)
+.+..+|++|..+....+ +.....+.++++||++||++.|.++|+|.+.|+.+|. |
T Consensus 105 ~am~~vl~lL~~i~~~~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~ 184 (290)
T TIGR02474 105 NAMVNVLTLLDDIANGKDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSS 184 (290)
T ss_pred HHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCccccc
Confidence 234588888876643211 1123567899999999999999999999999987643 1
Q ss_pred -HHHHHHHHHHHcCCC-cCChHHHHHHHHHHHhhcCCC
Q 006042 523 -GTCFALGGLQVAGKT-YNNCLAIRRAVDFLLNAQSDD 558 (663)
Q Consensus 523 -~T~~aL~aL~~~g~~-~~~~~~i~ra~~~Ll~~Q~~D 558 (663)
.|+-.|.-|...-.+ .+...+|+.|++||.+..-++
T Consensus 185 ~ES~~iv~~LM~~~~ps~~i~~ai~~A~~W~~~~~i~g 222 (290)
T TIGR02474 185 SESVGILLFLMTQPNPSAEIKEAIRAGVAWFDTSRIRG 222 (290)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 245555555544322 134678899999999987664
No 49
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.3e-10 Score=117.93 Aligned_cols=186 Identities=18% Similarity=0.170 Sum_probs=137.3
Q ss_pred cchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccC
Q 006042 388 DCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVE 467 (663)
Q Consensus 388 d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~ 467 (663)
|.--..+.+|..++ +.++++..++++++|.++|.+ .|||+.-+.. .++..
T Consensus 101 Wm~YWil~sl~lL~--------~~~dd~v~~~~i~fL~~c~~P-eGGfgGGPGQ---------------------l~HLA 150 (423)
T KOG0365|consen 101 WMCYWILNSLALLD--------EWLDDDVKENAIDFLFTCQGP-EGGFGGGPGQ---------------------LPHLA 150 (423)
T ss_pred hhHHHHHHHHHHhc--------CcCCHHHHHHHHHHHHhcCCC-CCCCCCCCcc---------------------chhhh
Confidence 66777777776664 347889999999999999999 9999754321 24666
Q ss_pred cHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccC-CCCcchhHHHHHHHHHHHcCCCcCChHHHHH
Q 006042 468 CTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGN-WGICFIYGTCFALGGLQVAGKTYNNCLAIRR 546 (663)
Q Consensus 468 ~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~-wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~r 546 (663)
.|..++.+|...+... .+ ..|+ -++-.+||.+..++||||.-. -|...+-+..+|+..-...+.+ .++--+-
T Consensus 151 ~TYAAVnaL~~~~~e~-A~--~~In--R~~l~~fL~slK~~dGgFrmh~~GE~DvRs~YcA~svasllni~--~deL~eG 223 (423)
T KOG0365|consen 151 PTYAAVNALCLCGSED-AY--SSIN--REKLYQFLFSLKDPDGGFRMHVEGEVDVRSAYCALSVASLLNIP--MDELFEG 223 (423)
T ss_pred HHHHHHHHHHhcCcHH-HH--HHhh--HHHHHHHHHHhcCCCCCeEeecCCcchHHHHHHHHHHHHHHCCC--cHHHHHH
Confidence 7999999999987541 11 1232 267899999999999999732 1444444444455555566765 3566777
Q ss_pred HHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCc-cCCCCC
Q 006042 547 AVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQL-ENGDFP 624 (663)
Q Consensus 547 a~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~-~dG~w~ 624 (663)
..+||.++|+-+||+|..+ |.+.+-..|.+|+.||...++.+. -.+++.++|.+.+|. ..|||.
T Consensus 224 ~~~wi~~CQtyEGG~GG~P------------~~EAHGGYTFCalAalalLn~~d~--ln~~~Ll~W~~~RQm~~E~GFq 288 (423)
T KOG0365|consen 224 TLDWIASCQTYEGGFGGEP------------GVEAHGGYTFCALAALALLNEMDQ--LNLEKLLEWAVRRQMRFEGGFQ 288 (423)
T ss_pred HHHHHHhcccccCCcCCCc------------cccccCCeeHHHHHHHHHHhhhhh--hCHHHHHHHHHHhhhhhhcccc
Confidence 7999999999999999763 445666688899999888777543 358899999999998 567774
No 50
>COG1657 SqhC Squalene cyclase [Lipid metabolism]
Probab=99.17 E-value=3.4e-10 Score=123.66 Aligned_cols=233 Identities=17% Similarity=0.150 Sum_probs=153.7
Q ss_pred ccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCccccccccccccccc
Q 006042 387 SDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYV 466 (663)
Q Consensus 387 ~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~ 466 (663)
++||+++.+++...+..+ .+. .++.++..||...|-...+-|........+.| +|+.....++.+
T Consensus 200 ~wD~~f~~~~~~~~g~~~-----~~~--~aiaka~~~L~~kq~~~~~~~~~~~~~~~g~W--------~f~~~~~~ypd~ 264 (517)
T COG1657 200 VWDGGFIRRALLVAGLAE-----TPI--PAIAKALMFLLDKQVLKYADWAVKRKFSPGGW--------GFSNINTGYPDA 264 (517)
T ss_pred cccchhhhhhhhhcCccc-----cch--HhHHhhhhhhHHHHHHHhhccccccccCCCcc--------ceeecccCCCCc
Confidence 578999999887765321 111 57888888888887753334443322222222 355555567889
Q ss_pred CcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCccc-------CC------C-----C--cchhHHHH
Q 006042 467 ECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYG-------NW------G-----I--CFIYGTCF 526 (663)
Q Consensus 467 ~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g-------~w------g-----~--~~~Y~T~~ 526 (663)
++|+.++.++...... +.+.++++|+...|+..|+|.. .| + + +..-||..
T Consensus 265 d~T~~~~~al~~~~~~----------~~~~~~l~~V~~~q~~~g~~a~~e~~~~~a~~~~L~~~~~~~~~~~s~adct~~ 334 (517)
T COG1657 265 DDTAGVVRALIGVQSL----------PNFELGLDWVLYMQNKLGGLAVYEDRNLHAWLRLLPPAEVKAMVDPSTADCTHR 334 (517)
T ss_pred hhhhHHHHHHHhhcch----------hhHHhhhhHhhhcccccCceeeeccccccHHHhhCCHhhccccccCCcccCCCc
Confidence 9999999999987643 3577899999999999998841 01 1 1 11225555
Q ss_pred HHHHHHHcCCCcC--ChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcH
Q 006042 527 ALGGLQVAGKTYN--NCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPT 604 (663)
Q Consensus 527 aL~aL~~~g~~~~--~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~ 604 (663)
++.+|.+.+.-.+ ....|++|++||++.|++||.|-..+..|+. ..|+.++-+|...|+.+..+.
T Consensus 335 ~~~~l~a~~~yl~~~~~~~i~~a~e~LL~~Q~~~GsW~g~w~v~~i-------------Y~~s~a~~~l~~~g~~~~~~~ 401 (517)
T COG1657 335 VVLALAALNAYLEAYDGQPIERALEWLLSDQEPDGSWYGRWGVCYI-------------YGTSGALSALALVGETDENEV 401 (517)
T ss_pred cHHHHhhhhhccccccCCcccHHHhhhhhhccccCceeeEEEEEEE-------------EehhhhhhhhhccCccccchH
Confidence 5555554433211 1466999999999999999999888755532 367888888888887653444
Q ss_pred HHHHHHHHHHhcCccCCCCCCCccccccccccccccCCccchHHHHHHHHHHHhC
Q 006042 605 PIHRGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRV 659 (663)
Q Consensus 605 ~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~~ 659 (663)
.+++++.||..+|+++|+|.+.... .+...|-.-+.--...+.|||..+-+..
T Consensus 402 ~v~~~~~~l~~~~~~~~Gw~e~~~~--~~~~~~~~t~~sl~~~~~wal~~~~~a~ 454 (517)
T COG1657 402 LVRKLISWLVSKQMPDGGWGEAKEA--ISDPVYTGTESSLLVQTNWALIALLTAL 454 (517)
T ss_pred HHHHHHHHhhhccccCCCccccccc--ccccccccccchhhcchhHHHHHHHHhc
Confidence 7999999999999999999865321 1112211112222356888888776543
No 51
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=99.12 E-value=1.8e-09 Score=110.46 Aligned_cols=219 Identities=20% Similarity=0.194 Sum_probs=140.2
Q ss_pred HHHHHhhhheecCCCce--e-ecCCCCchHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHhhcccCCCCCCccccCCCC-
Q 006042 296 HLNRIADYIWLGEDGMK--V-QTFGSQTWDTALGLQALMACNIADE-VESVLGKGHDYLKKAQIRDNPVGDYKGNFRHF- 370 (663)
Q Consensus 296 ~~~~l~~~~~~~~~g~~--~-~~~~s~vwdTal~~~AL~~ag~~~~-~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~- 370 (663)
+-+++..| ...||.+ . ....+.+|-||+++..|.++..--. ....|.++++||.++|..+ |.|....+..
T Consensus 2 GYqr~L~y--~~~DGsfs~f~~~~~~s~WLTAfv~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~d---G~F~e~~~~~~ 76 (246)
T PF07678_consen 2 GYQRQLSY--RRSDGSFSAFSSDSPSSTWLTAFVVKVFSQAKKYIFVDENVICRAVKWLISQQQPD---GSFEEDGPVIH 76 (246)
T ss_dssp HHHHHHTT--B-TTSSBBSSTTTSSBBHHHHHHHHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETT---SEB--SSS-SS
T ss_pred chHHHhcC--CCCCCCeeccccCCcccHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCC---CccccCCCccc
Confidence 45566666 4567743 2 2337889999999999998753221 1578999999999999876 7775322111
Q ss_pred --CCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhh
Q 006042 371 --SKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLE 448 (663)
Q Consensus 371 --~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~ 448 (663)
..||. ..++..||+++.||.+.+..... ..+.....+.||+++|.+.-.. .=
T Consensus 77 ~~~~g~~--------~~~~~lTA~VliAL~e~~~~~~~--~~~~~~~~i~kA~~~L~~~~~~---~~------------- 130 (246)
T PF07678_consen 77 REMQGGV--------EDDIALTAYVLIALLEAGSLCDS--EKPEYENAINKALNYLERHLDN---IQ------------- 130 (246)
T ss_dssp GGGSGGG--------THHHHHHHHHHHHHHHCHCCHTT--THHCHHHHHHHHHHHHHHHHGC---TS-------------
T ss_pred cccCCCC--------CCCeeehHHHHHHHHhhhhhccc--cchhhHHHHHHHHHHHHHhccc---cC-------------
Confidence 01111 23567899999999987642110 0123568999999999665221 00
Q ss_pred hcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCC----------
Q 006042 449 WLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGI---------- 518 (663)
Q Consensus 449 ~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~---------- 518 (663)
.++..|.+.-||...++ .+..+++++-|.+....+|+- -.|..
T Consensus 131 ----------------~~Y~lAl~aYAL~la~~----------~~~~~~~~~~L~~~a~~~~~~-~~W~~~~~~~~~~~~ 183 (246)
T PF07678_consen 131 ----------------DPYTLALVAYALALAGD----------SPQASKLLNKLNSMATTEGGL-RYWSSDESSSSSSSP 183 (246)
T ss_dssp ----------------SHHHHHHHHHHHHHTTT----------CHHHHHHHHHHHCHCEETTTT-CEE-SSSSSSSSSST
T ss_pred ----------------CHHHHHHHHHHHHhhcc----------cchHHHHHHHHHHhhhhcccc-CcccCCccccccccc
Confidence 12223334444555431 135577778887776554332 11110
Q ss_pred ------cchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHH
Q 006042 519 ------CFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLS 592 (663)
Q Consensus 519 ------~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALla 592 (663)
..+-.|++||.++...+ +.+...+.++||.++|+.+|||+.+ -.|..||.|
T Consensus 184 ~~~~~s~~vEtTaYaLLa~l~~~----~~~~~~~iv~WL~~qr~~~Ggf~ST-------------------QdTvvaL~A 240 (246)
T PF07678_consen 184 WSRGSSLDVETTAYALLALLKRG----DLEEASPIVRWLISQRNSGGGFGST-------------------QDTVVALQA 240 (246)
T ss_dssp TT-SHHHHHHHHHHHHHHHHHHT----CHHHHHHHHHHHHHCTTTTSSTSSH-------------------HHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHhcCCCCccCcH-------------------HHHHHHHHH
Confidence 11236899999988873 3578899999999999999999854 279999999
Q ss_pred HHH
Q 006042 593 LIS 595 (663)
Q Consensus 593 L~~ 595 (663)
|..
T Consensus 241 L~~ 243 (246)
T PF07678_consen 241 LAE 243 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 52
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M). Alpha (2)-M is a major carrier protein in serum. It is a broadly specific proteinase inhibitor. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. This group contains another broadly specific proteinase inhibitor: pregnancy zone protein (PZP). PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production thereby protecting the allogeneic fetus from attack by the maternal immune system. This group also contains C3, C4 and C5 of vertebrate complement. The vertebrate complement is an effector of both the acquired and innate immune systems The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propaga
Probab=99.11 E-value=8.9e-09 Score=107.40 Aligned_cols=220 Identities=19% Similarity=0.182 Sum_probs=137.8
Q ss_pred HHHHHHHHHHhhhheecCCCce--eecC-CCCchHHHHHHHHHHHcCC--CCchHHHHHHHHHHHHhhcccCCCCCCccc
Q 006042 291 IAFKKHLNRIADYIWLGEDGMK--VQTF-GSQTWDTALGLQALMACNI--ADEVESVLGKGHDYLKKAQIRDNPVGDYKG 365 (663)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~g~~--~~~~-~s~vwdTal~~~AL~~ag~--~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~ 365 (663)
..+++++++|..+ ..+||.+ ..+. .+++|.|++++.+|.+++. ..+ ++.++|+++||...|..+ |+|..
T Consensus 49 ~~i~~~~~~l~~~--Q~~dGgf~~w~~~~~~~~~~Ta~~~~~L~~a~~~~~v~-~~~i~ra~~~L~~~q~~~---g~~~~ 122 (282)
T cd02891 49 EYIRKGYQRLLTY--QRSDGSFSAWGNSDSGSTWLTAYVVKFLSQARKYIDVD-ENVLARALGWLVPQQKED---GSFRE 122 (282)
T ss_pred HHHHHHHHHHHhh--cCCCCCccccCCCCCCchHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHhccCCC---CCcCC
Confidence 4688899999887 4677754 2233 6799999999999987632 222 578999999999999876 66653
Q ss_pred cCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchh
Q 006042 366 NFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASL 445 (663)
Q Consensus 366 ~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~ 445 (663)
..+....+. + ++..++.+.||+++.+|...+. .....+.++++||.+.+.. .-
T Consensus 123 ~~~~~~~~~--~---~~~~~~~~~tA~al~~L~~~g~---------~~~~~~~~a~~~L~~~~~~-~~------------ 175 (282)
T cd02891 123 LGPVIHREM--K---GGVDDSVSLTAYVLIALAEAGK---------ACDASIEKALAYLETQLDG-LL------------ 175 (282)
T ss_pred CCCccCHhh--c---CCcCCCcchHHHHHHHHHHhcc---------cchHHHHHHHHHHHHhccc-CC------------
Confidence 322221111 1 2334677889999999987653 1256889999999876653 00
Q ss_pred hhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCC-------cccCCCC
Q 006042 446 LLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGS-------WYGNWGI 518 (663)
Q Consensus 446 ~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGs-------w~g~wg~ 518 (663)
++...+....+|...+.. +...+.++-|.+.-...+. |.+..+.
T Consensus 176 -------------------~~~~~a~la~al~~~g~~----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s 226 (282)
T cd02891 176 -------------------DPYALAILAYALALAGDS----------TRADEALKKLLEAAREKGGTAHWSLSWPGDYGS 226 (282)
T ss_pred -------------------ChHHHHHHHHHHHHcCcc----------HHHHHHHHHHHHHhhhcCCcccccCCCCCCCCc
Confidence 111233444444444321 1234445555444333332 2211121
Q ss_pred -cchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHH
Q 006042 519 -CFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLIS 595 (663)
Q Consensus 519 -~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ 595 (663)
.....|+.+|.+....+ +.....+.+.||.+.++.+|+|..+ -.|++||+||..
T Consensus 227 ~~~~~a~a~all~~~~~~----~~~~~~~~~~~L~~~~~~~~~~~sT-------------------q~t~~al~AL~~ 281 (282)
T cd02891 227 SLRVEATAYALLALLKLG----DLEEAGPIAKWLAQQRNSGGGFLST-------------------QDTVVALQALAA 281 (282)
T ss_pred hhhHHHHHHHHHHHHhcC----ChhhHHHHHHHHHHcCCCCCCcccH-------------------HHHHHHHHHHHh
Confidence 12345666666655433 2456788999999988888999854 279999999974
No 53
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=98.85 E-value=4.8e-08 Score=100.07 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=101.6
Q ss_pred CcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchh---------HHHHHHHHHHHcCC-
Q 006042 467 ECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIY---------GTCFALGGLQVAGK- 536 (663)
Q Consensus 467 ~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y---------~T~~aL~aL~~~g~- 536 (663)
..|...|..|+.+.... ....+.+++.||++||++.|.++|+|...+.....| ++..++..|..+..
T Consensus 44 ~aT~~e~~fLa~~y~~t---~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~ 120 (290)
T TIGR02474 44 GATVTEIRYLAQVYQQE---KNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANG 120 (290)
T ss_pred ccHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhc
Confidence 45677777787765432 234578899999999999999999998654322122 46677777754311
Q ss_pred -C----------cCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCc-cccCCCCC----CCcH-HHHHHHHHHHHHcCCC
Q 006042 537 -T----------YNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNK-IYTPLEGK----RSTV-VHTALAVLSLISAGQA 599 (663)
Q Consensus 537 -~----------~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~-~y~~~~g~----~s~~-~~Ta~ALlaL~~ag~~ 599 (663)
. .....+++||+++|++.|-++|||-..|..+++. .+.|-... .|-. ..|+-.|..|+.....
T Consensus 121 ~~~~~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~p 200 (290)
T TIGR02474 121 KDPFDVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNP 200 (290)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCC
Confidence 1 0246889999999999999999888777666654 34441111 1222 2356667777765433
Q ss_pred C-CCcHHHHHHHHHHHhcCccCCCC
Q 006042 600 D-RDPTPIHRGVKLLINSQLENGDF 623 (663)
Q Consensus 600 ~-~~~~~v~r~i~~L~~~Q~~dG~w 623 (663)
. ..-++|+.|++||.+...++=.|
T Consensus 201 s~~i~~ai~~A~~W~~~~~i~g~~~ 225 (290)
T TIGR02474 201 SAEIKEAIRAGVAWFDTSRIRGYAY 225 (290)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCcee
Confidence 1 11247889999999987665333
No 54
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=3.2e-07 Score=92.04 Aligned_cols=144 Identities=17% Similarity=0.280 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHH
Q 006042 417 LYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIV 496 (663)
Q Consensus 417 i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~ 496 (663)
.++++.||.++|+= ||||+..+.. -++...|..+|.+|+..++..++.... +..++
T Consensus 176 ~ek~~~yI~~~q~Y-dgGfg~~pg~---------------------EsHgG~TfCAlAsL~L~~~l~~e~l~~--~~~~e 231 (347)
T KOG0367|consen 176 KEKLIGYIRSSQRY-DGGFGQHPGG---------------------ESHGGATFCALASLALMGKLIPEELSN--TSKVE 231 (347)
T ss_pred HHHHHHHHHHhhcc-ccccccCCCC---------------------CCCcchhHHHHHHHHHHhhhhhhhhcc--ccCHH
Confidence 47889999999999 9999854432 145667888888888877653322111 12389
Q ss_pred HHHHHHHHhcccCCCcccCCC--CcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCC-CCccCCCcCCCCccc
Q 006042 497 KAVHYIEDEQTADGSWYGNWG--ICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDD-GGWGESYKSCPNKIY 573 (663)
Q Consensus 497 rav~~L~~~Q~~DGsw~g~wg--~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D-GgWg~~~~s~~~~~y 573 (663)
|-++|++.+|..+|+|.|+-. +.-.|. .+....|..++... -..-++.-+||+++|..- |||...
T Consensus 232 rlirWli~RQ~~sgGfqGR~NKp~DTCYa-FWigasLklL~~~~--~~d~~~lr~fll~~Q~~~iGGFsK~--------- 299 (347)
T KOG0367|consen 232 RLIRWLIQRQVSSGGFQGRTNKPVDTCYA-FWIGASLKLLDADW--LIDKQVLRKFLLSTQDKLIGGFSKW--------- 299 (347)
T ss_pred HHHHHHHHHhhccCCcCCCCCCCchhHHH-HHHHHHHHHccchH--hhhHHHHHHHHHHhhhhhcCcccCC---------
Confidence 999999999999999998642 112222 44556666665432 223346678999999886 999865
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCC
Q 006042 574 TPLEGKRSTVVHTALAVLSLISAGQA 599 (663)
Q Consensus 574 ~~~~g~~s~~~~Ta~ALlaL~~ag~~ 599 (663)
|+..+++.+|++++.||+..++.
T Consensus 300 ---P~~~pD~~HsylG~~alal~ee~ 322 (347)
T KOG0367|consen 300 ---PEEDPDLLHSYLGLAALALLEEK 322 (347)
T ss_pred ---CccCchHHHHHHHHHHHHHhcCC
Confidence 45678999999999999877654
No 55
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.76 E-value=4.2e-07 Score=87.23 Aligned_cols=253 Identities=20% Similarity=0.216 Sum_probs=144.7
Q ss_pred HHHHHHHHhhhhc-CCCceeeecccchhh----cc---ccccccCCCcHHHHHHHHHHhhhheecCCCceeecCCCCchH
Q 006042 251 ALKETMKFIHYED-HNSRYITIGCVEKPL----CM---LACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWD 322 (663)
Q Consensus 251 a~~~~~~~i~~~~-~~~~~~~~~~v~~~l----~~---l~~~~~~p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwd 322 (663)
-++++++.|+.++ +.++|....++-+.+ .+ +-+.++++ |...|.+++|++.+ |..+. .
T Consensus 7 ~l~rvi~fi~~RrhedGGy~f~~~Lpdti~~TyYAi~i~s~lg~ev--Pr~EktiefL~d~~---------qt~~~---~ 72 (274)
T COG1689 7 NLNRVIEFIEKRRHEDGGYCFVSQLPDTINDTYYAIKIYSLLGHEV--PRKEKTIEFLYDQM---------QTAGV---G 72 (274)
T ss_pred hHHHHHHHHHHhhcCCCCeEEeccCcchhhhhhhhhhhhhhcCCcC--chHHHHHHHHHHHH---------HHhhh---H
Confidence 3566778888765 566665555554432 11 22223333 67889999998843 22222 3
Q ss_pred HHHHHHHHHHcCCCC-chHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhc
Q 006042 323 TALGLQALMACNIAD-EVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLS 401 (663)
Q Consensus 323 Tal~~~AL~~ag~~~-~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~ 401 (663)
.+.++.+|.-.|..+ ....++- .++......+ .|.... .|.-.|...+ -..+|-.+..+|....
T Consensus 73 ~a~~~~~l~~lg~~d~~r~~~~l---~~~~~~~~e~----Kf~~~l----ggs~~f~t~~----~Le~ty~~~~~l~~~n 137 (274)
T COG1689 73 VAMAIEFLRILGAKDLARNKMLL---LFLKYNPLEE----KFAVGL----GGSEEFGTAT----PLEATYWMMSALNMVN 137 (274)
T ss_pred HHHHHHHHHHhcccccchhhHHH---HHhhcCchhH----HHhhhc----CceeecCCCc----hHHHHHHHHHHHHHhC
Confidence 455666666666543 1122222 2333333321 111111 1222342221 1456777777776543
Q ss_pred CCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhh
Q 006042 402 LMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKK 481 (663)
Q Consensus 402 ~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~ 481 (663)
. +..+..-+|+++.|+. +|++.+|.. +.+....|-.++-.|...+
T Consensus 138 ~------------~~~eE~k~~v~~~~re-~~~g~~YGv---------------------~~pnt~~t~~aly~l~~k~- 182 (274)
T COG1689 138 Y------------EYLEEMKEKVIEFVRE-FGIGDAYGV---------------------THPNTTMTYQALYTLGSKG- 182 (274)
T ss_pred c------------CchHHHHHHHHHHhhh-hcccccccc---------------------CCcchHHHHHHHHhhcccc-
Confidence 2 1224456899999998 998877753 2244445555555544322
Q ss_pred hCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCc--chhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC
Q 006042 482 LYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGIC--FIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG 559 (663)
Q Consensus 482 ~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~--~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 559 (663)
+ ++....|=.. --.+|+|....+.. |+-.|..|+.+|..++.. -.+.+-++|+.+.||+||
T Consensus 183 --~----------~~~v~~Fe~~-c~~~Ggf~~~P~syPPYiE~t~ya~r~lelL~~k----~~i~~~~rFI~slqN~nG 245 (274)
T COG1689 183 --P----------KEEVRHFELC-CGDWGGFTEVPNSYPPYIEPTFYALRGLELLGGK----YCISDHIRFIRSLQNQNG 245 (274)
T ss_pred --c----------hHHHHhHHhc-cccCCCcccCCCCCCCccchHHHHHhHHHHHccC----cCchHHHHHHHHhhcCCC
Confidence 1 2222333222 22345554332333 344899999999998875 357788899999999999
Q ss_pred CccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHH
Q 006042 560 GWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLIS 595 (663)
Q Consensus 560 gWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ 595 (663)
||..+. +++-|+...|.+||..|..
T Consensus 246 GFRRS~-----------~~GISt~e~tYrAl~~L~~ 270 (274)
T COG1689 246 GFRRSY-----------ELGISTFENTYRALASLAS 270 (274)
T ss_pred CeeeeE-----------eccccchHHHHHHHHHHHH
Confidence 999773 3678999999999988764
No 56
>COG1689 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.60 E-value=8.4e-07 Score=85.22 Aligned_cols=227 Identities=19% Similarity=0.203 Sum_probs=134.8
Q ss_pred HHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCc-cchHHHHHHHHHhcCCCCcccCCCCCHHHHHHH
Q 006042 342 VLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVS-DCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDA 420 (663)
Q Consensus 342 ~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~-d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a 420 (663)
.+.+.++||...|+.+ | |..|- .+.||+ .+|-+|++.+-.++. +.+..++.
T Consensus 7 ~l~rvi~fi~~Rrhed---G------------Gy~f~---~~Lpdti~~TyYAi~i~s~lg~----------evPr~Ekt 58 (274)
T COG1689 7 NLNRVIEFIEKRRHED---G------------GYCFV---SQLPDTINDTYYAIKIYSLLGH----------EVPRKEKT 58 (274)
T ss_pred hHHHHHHHHHHhhcCC---C------------CeEEe---ccCcchhhhhhhhhhhhhhcCC----------cCchHHHH
Confidence 4788999999999865 3 33441 345676 889999998877654 22356899
Q ss_pred HHHHHh-hccccCCCcccc----------ccCCchhh---hhhcCcccccccccccccc-------cCcHHHHHHHHHHh
Q 006042 421 VNFLLS-LQDEKTGGLAVW----------ERAGASLL---LEWLNPVEFLEDLIVEHTY-------VECTASAIEAFMLF 479 (663)
Q Consensus 421 ~~wLl~-~Qn~~DGgw~~~----------~~~~~~~~---l~~~~~~e~f~~~~~d~~~-------~~~Ta~~L~aL~~~ 479 (663)
++||.+ ||.. -+|+..- +.+++... ++..+.-+.|. .+...+. ...|..+..+|...
T Consensus 59 iefL~d~~qt~-~~~~a~~~~~l~~lg~~d~~r~~~~l~~~~~~~~e~Kf~-~~lggs~~f~t~~~Le~ty~~~~~l~~~ 136 (274)
T COG1689 59 IEFLYDQMQTA-GVGVAMAIEFLRILGAKDLARNKMLLLFLKYNPLEEKFA-VGLGGSEEFGTATPLEATYWMMSALNMV 136 (274)
T ss_pred HHHHHHHHHHh-hhHHHHHHHHHHHhcccccchhhHHHHHhhcCchhHHHh-hhcCceeecCCCchHHHHHHHHHHHHHh
Confidence 999988 6777 6676321 11111111 11111111111 1111111 24455555556554
Q ss_pred hhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC
Q 006042 480 KKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG 559 (663)
Q Consensus 480 ~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 559 (663)
+.. ..+..-.|+++.|+++|... ..|+..+ .|-+++.||...+.. ..++....|=.+ -..+|
T Consensus 137 n~~-----------~~eE~k~~v~~~~re~~~g~-~YGv~~p-nt~~t~~aly~l~~k----~~~~~v~~Fe~~-c~~~G 198 (274)
T COG1689 137 NYE-----------YLEEMKEKVIEFVREFGIGD-AYGVTHP-NTTMTYQALYTLGSK----GPKEEVRHFELC-CGDWG 198 (274)
T ss_pred CcC-----------chHHHHHHHHHHhhhhcccc-ccccCCc-chHHHHHHHHhhccc----cchHHHHhHHhc-cccCC
Confidence 422 23445578888898887653 3455444 234455555555432 123333344444 35789
Q ss_pred CccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccc
Q 006042 560 GWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGV 631 (663)
Q Consensus 560 gWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~ 631 (663)
||.+.+.|+ ++-...|-||+-+|...+... .+.+-++|+.+-|++||||...-..|.
T Consensus 199 gf~~~P~sy-----------PPYiE~t~ya~r~lelL~~k~----~i~~~~rFI~slqN~nGGFRRS~~~GI 255 (274)
T COG1689 199 GFTEVPNSY-----------PPYIEPTFYALRGLELLGGKY----CISDHIRFIRSLQNQNGGFRRSYELGI 255 (274)
T ss_pred CcccCCCCC-----------CCccchHHHHHhHHHHHccCc----CchHHHHHHHHhhcCCCCeeeeEeccc
Confidence 998886553 344568999999998776542 477899999999999999986544443
No 57
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.39 E-value=4.2e-07 Score=66.88 Aligned_cols=42 Identities=29% Similarity=0.479 Sum_probs=40.6
Q ss_pred HHHHHHHHHhccCCCCccccccCCCCceehhHHHHHHHHHhc
Q 006042 51 RREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLG 92 (663)
Q Consensus 51 ~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~t~~~y~aL~l~G 92 (663)
++++++||+++|++||||+..+++++++..|..++.+|+++|
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHHHHHHHHHcC
Confidence 689999999999999999999999999999999999999987
No 58
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.2e-06 Score=103.63 Aligned_cols=259 Identities=23% Similarity=0.258 Sum_probs=154.9
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCC----CCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHH
Q 006042 323 TALGLQALMACNIADEVESVLGKGHDYLKKAQIRDN----PVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVL 398 (663)
Q Consensus 323 Tal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~----~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~ 398 (663)
+-+++..|-+.+.-. ...-++|.++|...-++.. ..|+|+. |.. ......+|.||++++.|.
T Consensus 948 ni~v~~YL~~t~q~~--~~~k~ka~~~l~~GyqrqL~yk~~DgSySa-----------Fg~-~~~~~stWLtafvlr~f~ 1013 (1436)
T KOG1366|consen 948 NIYVLKYLPKTNQLT--PELKRKALKFLEQGYQRQLTYKRADGSYSA-----------FGS-SDRSGSTWLTAFVLRVFS 1013 (1436)
T ss_pred hhhHHHHHhhhhccC--hhHHHHHHHHHHHHHHHHHhhhccCCChhh-----------hcC-CCCcccHHHHHHHHHHhh
Confidence 566777777765432 2345678888877632210 1144432 221 234457899999999998
Q ss_pred HhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccc--cCcHHHHHHHH
Q 006042 399 QLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTY--VECTASAIEAF 476 (663)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~--~~~Ta~~L~aL 476 (663)
.+.+ + + .++...+.++++||..+|.+ +|.|..- ++.+.+.++..-. .-.|+.++..+
T Consensus 1014 ~a~~-~---i--~id~~~i~~a~~wl~~~Qk~-~GsF~e~--------------~~v~~~~~qg~l~~~~~l~~~~l~~~ 1072 (1436)
T KOG1366|consen 1014 QAKE-Y---I--FIDPNVITQALNWLSQQQKE-NGSFKEV--------------GEVLHNEMQGGLQDIVALTAIVLSVI 1072 (1436)
T ss_pred hccC-c---e--EecHHHHHHHHHHHHHhhcc-CceEecc--------------ccccchhhhcCCCCcceeeeEeeeee
Confidence 7643 1 1 26788999999999999999 9999421 1123333332111 12233332222
Q ss_pred HHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcC
Q 006042 477 MLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQS 556 (663)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~ 556 (663)
.... ...+++++.|+.+.-..- ...+|..+.+..||..++.+. ..+++.-|.+.-.
T Consensus 1073 ~~~~-----------~~~~~~a~~~~~~~~~~~--------~~~~~~~a~~ayAl~l~~sp~-----a~~~~~~l~~~a~ 1128 (1436)
T KOG1366|consen 1073 LDVD-----------NASIQKAVAYLEESLDSG--------SMDVYTVAITAYALQLAKSPQ-----AAKALAKLKSLAR 1128 (1436)
T ss_pred ccch-----------hhHHHHHHHHHhhccCcc--------ccccchHHHHHHHHHhccCch-----HHHHHHhhhhhhc
Confidence 2111 246899999998876432 234666677778888876652 2233322433322
Q ss_pred CCCC---ccCCCcCCCCcc-ccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCcccccc
Q 006042 557 DDGG---WGESYKSCPNKI-YTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVF 632 (663)
Q Consensus 557 ~DGg---Wg~~~~s~~~~~-y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f 632 (663)
..|. |........++. |.+ ....-+++.|+|||++++...+.+ .+...++||.++++..|||...
T Consensus 1129 ~~~d~~~~~~~~~~~~~~~~~~~-q~~s~~VE~tsYaLL~~~~~~~~~----~~~pivrWl~~qr~~~GGf~ST------ 1197 (1436)
T KOG1366|consen 1129 VEGDRRYWWASALKAKNAVKYSP-QARSIDVETTAYALLAYLLLAQVD----YALPIVRWLVEQRNALGGFSST------ 1197 (1436)
T ss_pred ccCCceeeeeccccccCcccCCC-ccchhhccchHHHHHHHHHhcccC----cCchhHhhhhhhhcccCceeeh------
Confidence 2222 322221111111 221 123455678999999988776542 3556899999999999999865
Q ss_pred ccccccccCCccchHHHHHHHHHHHhCCC
Q 006042 633 MRNCMLHYAEYRNIFPLRALAEYRKRVPL 661 (663)
Q Consensus 633 ~~~~~~~y~~y~~~~pl~AL~~y~~~~~~ 661 (663)
++++..|.||.+|..+...
T Consensus 1198 ----------QdTvvalqaLs~y~~~~~~ 1216 (1436)
T KOG1366|consen 1198 ----------QDTVVALQALSEYAALSHT 1216 (1436)
T ss_pred ----------HHHHHHHHHHHHhhhhccc
Confidence 4788999999999876543
No 59
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=98.23 E-value=3.1e-06 Score=62.26 Aligned_cols=43 Identities=33% Similarity=0.505 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcC
Q 006042 543 AIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAG 597 (663)
Q Consensus 543 ~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag 597 (663)
.++++++||+++|++||||+..+ +..+++..|.||+.+|..+|
T Consensus 2 d~~~~~~~l~~~Q~~dGGf~~~~------------~~~~d~~~t~~~~~~L~llg 44 (44)
T PF00432_consen 2 DVEKLIRFLLSCQNPDGGFGGRP------------GGESDTCYTYCALAALSLLG 44 (44)
T ss_dssp HHHHHHHHHHHTBBTTSSBBSST------------TSSBBHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCCCCCC------------CCCCChHHHHHHHHHHHHcC
Confidence 47899999999999999999874 55789999999999998654
No 60
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=98.01 E-value=1.9e-05 Score=81.33 Aligned_cols=152 Identities=16% Similarity=0.252 Sum_probs=86.5
Q ss_pred CcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcc------hh---HHHHHHHHHHHc--C
Q 006042 467 ECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICF------IY---GTCFALGGLQVA--G 535 (663)
Q Consensus 467 ~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~------~Y---~T~~aL~aL~~~--g 535 (663)
+.|...|..|+.+.... ..+.+.+++.||++||++.|.++|||...|-... || .+.-++.-|..+ +
T Consensus 39 ~aT~~ei~fLa~~y~~t---~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~ 115 (289)
T PF09492_consen 39 DATTTEIRFLARVYQAT---KDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEG 115 (289)
T ss_dssp GTTHHHHHHHHHHHHHC---G-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHh---CChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhh
Confidence 45778888888776542 3456889999999999999999999987553221 22 345555555443 2
Q ss_pred CC-c---------CChHHHHHHHHHHHhhcCC-C---CCccCCCcCC-CC----ccccCCCCCCCcHHHHHHHHHHHHHc
Q 006042 536 KT-Y---------NNCLAIRRAVDFLLNAQSD-D---GGWGESYKSC-PN----KIYTPLEGKRSTVVHTALAVLSLISA 596 (663)
Q Consensus 536 ~~-~---------~~~~~i~ra~~~Ll~~Q~~-D---GgWg~~~~s~-~~----~~y~~~~g~~s~~~~Ta~ALlaL~~a 596 (663)
.. . ....+++|++++|++.|-. + -+|....... .. ..|.+ +.-.+ ..|+-.+..|+..
T Consensus 116 ~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~-pSls~--~ES~~iv~~LM~~ 192 (289)
T PF09492_consen 116 KGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEP-PSLSG--SESVGIVRFLMSL 192 (289)
T ss_dssp -TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT---SSEEC--CCHHHHHHHHCTS
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCC-ccccc--ccHHHHHHHHhcC
Confidence 21 1 2367899999999999973 2 3587654221 11 11222 11011 2456677778766
Q ss_pred CCCCC-CcHHHHHHHHHHHhcCccCCCCC
Q 006042 597 GQADR-DPTPIHRGVKLLINSQLENGDFP 624 (663)
Q Consensus 597 g~~~~-~~~~v~r~i~~L~~~Q~~dG~w~ 624 (663)
..... .-++|+.|++||.++..++..|.
T Consensus 193 ~~ps~~v~~aI~~AvaWl~~~ki~g~~~~ 221 (289)
T PF09492_consen 193 PNPSPEVLAAIEAAVAWLESVKIPGKRWE 221 (289)
T ss_dssp SS--HHHHHHHHHHHHHHCCTSEEEEEE-
T ss_pred CCCCHHHHHHHHHHHHHHHhCcCCCceeE
Confidence 54320 11378889999999887766543
No 61
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=97.59 E-value=0.00012 Score=75.47 Aligned_cols=157 Identities=13% Similarity=0.185 Sum_probs=88.9
Q ss_pred ccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCccccccccccccccc
Q 006042 387 SDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYV 466 (663)
Q Consensus 387 ~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~ 466 (663)
-+.|...+.-|..+-.. .+++.+.+++.|+++||++.|.+ +|||+-+-+.+++ +...+ .|. =
T Consensus 38 N~aT~~ei~fLa~~y~~----t~d~~y~~A~~kgl~ylL~aQyp-nGGWPQ~yP~~~~-Y~~~I----TfN--------D 99 (289)
T PF09492_consen 38 NDATTTEIRFLARVYQA----TKDPRYREAFLKGLDYLLKAQYP-NGGWPQFYPLRGG-YHDHI----TFN--------D 99 (289)
T ss_dssp GGTTHHHHHHHHHHHHH----CG-HHHHHHHHHHHHHHHHHS-T-TS--BSECS--SG-GGGSE----E-G--------G
T ss_pred ChhHHHHHHHHHHHHHH----hCChHHHHHHHHHHHHHHHhhCC-CCCCCccCCCCCC-CCCce----EEc--------c
Confidence 34588888888776421 13446789999999999999999 9999644322221 21111 011 1
Q ss_pred CcHHHHHHHHHHhhhhCCCc------chHHHHHHHHHHHHHHHHhccc-C---CCccc---------CCCCcc------h
Q 006042 467 ECTASAIEAFMLFKKLYPHH------RKKEIENFIVKAVHYIEDEQTA-D---GSWYG---------NWGICF------I 521 (663)
Q Consensus 467 ~~Ta~~L~aL~~~~~~~~~~------~~~~~~~~i~rav~~L~~~Q~~-D---Gsw~g---------~wg~~~------~ 521 (663)
+....+|..|........++ ....+.++++||+++|++.|-. + -.|.. .|...| .
T Consensus 100 dam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~ 179 (289)
T PF09492_consen 100 DAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSG 179 (289)
T ss_dssp GHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEEC
T ss_pred HHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCccccc
Confidence 34567777777765432322 2355788999999999999972 2 34421 111111 1
Q ss_pred hHHHHHHHHHHHcCCCc-CChHHHHHHHHHHHhhcCCCCCc
Q 006042 522 YGTCFALGGLQVAGKTY-NNCLAIRRAVDFLLNAQSDDGGW 561 (663)
Q Consensus 522 Y~T~~aL~aL~~~g~~~-~~~~~i~ra~~~Ll~~Q~~DGgW 561 (663)
-.|+-++.-|...-.+. +...+|+.|++||.++.-++.-|
T Consensus 180 ~ES~~iv~~LM~~~~ps~~v~~aI~~AvaWl~~~ki~g~~~ 220 (289)
T PF09492_consen 180 SESVGIVRFLMSLPNPSPEVLAAIEAAVAWLESVKIPGKRW 220 (289)
T ss_dssp CCHHHHHHHHCTSSS--HHHHHHHHHHHHHHCCTSEEEEEE
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhCcCCCcee
Confidence 13566666666554331 34577889999999887665544
No 62
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=97.59 E-value=0.0057 Score=71.13 Aligned_cols=260 Identities=13% Similarity=0.109 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCcccc-CCCCCCCcccCccCCCCCCCccchHHHHHHHHHh
Q 006042 322 DTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGN-FRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQL 400 (663)
Q Consensus 322 dTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~-~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~ 400 (663)
|++++++||..+|.. +..++.++||.+.|..+ |.|... +.+..+..|.+ -.-.|.|+.++-++...
T Consensus 299 D~~~~a~Al~~~G~~----~~a~~~l~~l~~~q~~~---G~~~~~~~~dG~~~~~~~------~~Q~D~~g~~l~al~~y 365 (616)
T TIGR01577 299 DASYIATALDRAGYH----DRVDRFFRWAMQTQSRD---GSWQQRYYLNGRLAPLQW------GLQIDETGSILWAMDQH 365 (616)
T ss_pred cHHHHHHHHHHCCCH----HHHHHHHHHHHHhhCcC---CCcceEEecCCCCCCCCC------CccccchhHHHHHHHHH
Confidence 899999999999975 45788999999999876 665432 22221111111 12357799888877443
Q ss_pred cCC--CCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHH
Q 006042 401 SLM--PPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFML 478 (663)
Q Consensus 401 ~~~--~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~ 478 (663)
-.. +.+++ + ..-+.++++++|+.+...+ + +.. +....|-+. . . .++...+.+..||..
T Consensus 366 ~~~t~d~~~~-~-~~~~~v~~a~~fl~~~~~~-~--l~~---~~~~lWEer------~-----G-~~~~t~a~~~aAL~~ 425 (616)
T TIGR01577 366 YRLTNDRAFL-E-EIWESVQKAAQYLILFIDP-E--TPL---PCRDLWEER------E-----G-VFTYTASAVYGGLDA 425 (616)
T ss_pred HHHHCCHHHH-H-HHHHHHHHHHHHHHHhccC-C--CCC---CCCccceec------C-----C-ccCccHHHHHHHHHH
Confidence 210 00000 0 1125689999999987644 2 110 011112100 0 0 123334444445544
Q ss_pred h---hhhCCCcchHHHHHHHHHHHHHHHH-----hcccCCCcccC-CCC---cchhHHHHHHHHHHH-cCCCcCChHHHH
Q 006042 479 F---KKLYPHHRKKEIENFIVKAVHYIED-----EQTADGSWYGN-WGI---CFIYGTCFALGGLQV-AGKTYNNCLAIR 545 (663)
Q Consensus 479 ~---~~~~~~~~~~~~~~~i~rav~~L~~-----~Q~~DGsw~g~-wg~---~~~Y~T~~aL~aL~~-~g~~~~~~~~i~ 545 (663)
. .+...+ . +..+..++..+.|++ ..+++++++.+ .+. ..+-. .++.+|.. +|.....++.+.
T Consensus 426 aa~lA~~lGd-~--~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~~~~~~~vD--aSlL~l~~~~g~l~~~Dpr~v 500 (616)
T TIGR01577 426 AAAVADKLGE-K--RLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIKLMVLDKTID--ISILGISVPFNLIAPDDERMV 500 (616)
T ss_pred HHHHHHHcCC-h--HHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeecCCCCCCccc--HHHHhHHHhcCCCCCCChHHH
Confidence 3 222111 1 111233444444443 34556555432 121 11112 23445543 665444677777
Q ss_pred HHHHHHHhhcCC--CCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCc---------HHHHHHHHHHH
Q 006042 546 RAVDFLLNAQSD--DGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDP---------TPIHRGVKLLI 614 (663)
Q Consensus 546 ra~~~Ll~~Q~~--DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~---------~~v~r~i~~L~ 614 (663)
+.++-+.+.-.. +|||.... ...|. ++.+-..+|.|...++..+|+..... +..++-++|++
T Consensus 501 ~Tv~~I~~~L~~~~~ggi~RY~----~D~y~---~g~~w~i~T~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~ 573 (616)
T TIGR01577 501 KMAEAIEKHLTSPIVGGIKRYE----NDPYV---GGNPWILTTLWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVM 573 (616)
T ss_pred HHHHHHHHHhcccCCCeeeCCC----CCCCC---CCCcHHHHHHHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHH
Confidence 777777665443 57775321 11233 23455688999999999887653110 13456689999
Q ss_pred hcCccCCCCCCC
Q 006042 615 NSQLENGDFPQQ 626 (663)
Q Consensus 615 ~~Q~~dG~w~~~ 626 (663)
++.++.|-++|+
T Consensus 574 ~~~~~~Gll~Eq 585 (616)
T TIGR01577 574 DHRTDLGLLPEQ 585 (616)
T ss_pred hcCCCCCCCccc
Confidence 998999999876
No 63
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.40 E-value=0.021 Score=67.08 Aligned_cols=112 Identities=12% Similarity=0.170 Sum_probs=69.8
Q ss_pred CCCceeeecccchhhccccccccCCCcHHHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHH
Q 006042 264 HNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVL 343 (663)
Q Consensus 264 ~~~~~~~~~~v~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l 343 (663)
..+|-+..+|...+-..+. ..| .+++++|...+-.. +|.-...++.++.+...++-.|...|++..+.+.|
T Consensus 263 ~~~GS~~~SPSaTAaaL~~----~~d----~~cl~YL~~~~~k~-~GgVP~vyP~d~fE~LwlVDtLqRLGIs~hF~~EI 333 (800)
T PLN02592 263 CQDGSFLFSPSSTAFALMQ----TKD----ENCLEYLNKAVQRF-NGGVPNVYPVDLFEHIWAVDRLQRLGISRYFEPEI 333 (800)
T ss_pred CCCCCccCCchHHHHHHhc----cCc----hHHHHHHHHHHHHc-CCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHH
Confidence 4444456667665433222 222 35666666543322 34434455778899999999999999987778889
Q ss_pred HHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhc
Q 006042 344 GKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLS 401 (663)
Q Consensus 344 ~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~ 401 (663)
+.+++.+.+.=..+ | .||+ .+...+|.++||.+.+.|...+
T Consensus 334 ~~iLd~iy~~w~~~---g-----------~~~a---~~~~~~Dld~TALaFRLLRqhG 374 (800)
T PLN02592 334 KECIDYVHRYWTEN---G-----------ICWA---RNSHVHDIDDTAMGFRLLRLHG 374 (800)
T ss_pred HHHHHHHHHHHhhc---C-----------cccc---cCCCcCCHHHHHHHHHHHHHcC
Confidence 99999887531111 1 0111 0112468999999999887654
No 64
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.25 E-value=0.012 Score=63.02 Aligned_cols=220 Identities=16% Similarity=0.163 Sum_probs=126.1
Q ss_pred CCCHHHHHHHHHHHHhhccc-cCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchH
Q 006042 411 KMEPERLYDAVNFLLSLQDE-KTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKK 489 (663)
Q Consensus 411 ~~~~~~i~~a~~wLl~~Qn~-~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~ 489 (663)
+...+.+.++++|++..+++ ++|++......... ..+|.-..++..|..+++...+. .
T Consensus 86 ~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~-------------------~wiD~~~M~~p~l~~~~~~tgd~--~ 144 (336)
T PF07470_consen 86 EKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQ-------------------VWIDGMYMNLPFLAWAGKLTGDP--K 144 (336)
T ss_dssp HHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTE-------------------EETTHHHHHHHHHHHHHHHHTGH--H
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCc-------------------eeeccccccHHHHHHHHHHHCCc--H
Confidence 34667889999988765543 38887431111110 12455556777777766542221 1
Q ss_pred HHHHHHHHHHHHHHHhccc-CCCcccC--------CC-CcchhHHHHHHHHHHHcC----CCc----CChHHHHHHHHHH
Q 006042 490 EIENFIVKAVHYIEDEQTA-DGSWYGN--------WG-ICFIYGTCFALGGLQVAG----KTY----NNCLAIRRAVDFL 551 (663)
Q Consensus 490 ~~~~~i~rav~~L~~~Q~~-DGsw~g~--------wg-~~~~Y~T~~aL~aL~~~g----~~~----~~~~~i~ra~~~L 551 (663)
-.+.+++....+.....++ +|-|.-. |. .+-.-|.++++.||..+= ... ......++.++.|
T Consensus 145 ~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l 224 (336)
T PF07470_consen 145 YLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADAL 224 (336)
T ss_dssp HHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHH
Confidence 2345566666666666654 6766421 11 123457788888887431 100 1234566778888
Q ss_pred HhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHH---HcCCCCC--CcHHHHHHHHHHHhc-CccCCC--C
Q 006042 552 LNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLI---SAGQADR--DPTPIHRGVKLLINS-QLENGD--F 623 (663)
Q Consensus 552 l~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~---~ag~~~~--~~~~v~r~i~~L~~~-Q~~dG~--w 623 (663)
.+.|.+||.|........ ++.....+.||.+.-+|+ ..|..+. -.+.++|+.+.|+++ -.+||. +
T Consensus 225 ~~~q~~~G~w~~~~~~~~-------~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~~~~~dG~~~~ 297 (336)
T PF07470_consen 225 ARYQDEDGLWYQDLDDPD-------PGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSNAIDPDGKLGL 297 (336)
T ss_dssp HTTSTTTSBEBSBTTTTT-------TTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHCEB-TTSSSBB
T ss_pred HhcCCCCCCcceecCCCC-------CCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhCccCCCCCeEE
Confidence 999999999986643211 123455677776666664 3454421 113788999999999 678887 5
Q ss_pred CCCccccccc---cccccccCCccchHHHHHHHHHHHh
Q 006042 624 PQQEIMGVFM---RNCMLHYAEYRNIFPLRALAEYRKR 658 (663)
Q Consensus 624 ~~~~~~g~f~---~~~~~~y~~y~~~~pl~AL~~y~~~ 658 (663)
.......... ..-......|-.++-|+||.+|.+.
T Consensus 298 ~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~~r~ 335 (336)
T PF07470_consen 298 KGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEYERL 335 (336)
T ss_dssp TCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHHHCG
T ss_pred eeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHh
Confidence 4332111111 1113344568889999999999874
No 65
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=97.19 E-value=0.0035 Score=65.77 Aligned_cols=91 Identities=25% Similarity=0.322 Sum_probs=69.1
Q ss_pred ccCcHHHHHHHHHHhhhhCCC--cchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCC-h
Q 006042 465 YVECTASAIEAFMLFKKLYPH--HRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNN-C 541 (663)
Q Consensus 465 ~~~~Ta~~L~aL~~~~~~~~~--~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~-~ 541 (663)
++|.+|.++.||..+....+. .-...+..+|++.++.|.+.|.+||.++ .+|.|..|++||...+..+.. .
T Consensus 185 sVDT~AmA~LALtCv~~~~~~~~~~~~~i~~~i~~~~~kIl~~q~~~G~~G------NiySTglAmQAL~~~~~~~~~~~ 258 (326)
T PF01122_consen 185 SVDTGAMAVLALTCVKNSNPNGPELRRRIQQAIRSLVEKILSQQKPNGLFG------NIYSTGLAMQALSVSPSPPSESE 258 (326)
T ss_dssp HHHHHHHHHHHHHHHHTTTSTTGGGHHHHHHHHHHHHHHHHHTB-TTS-BS------STTTHHHHHHHHTT-SS-SSHHH
T ss_pred CccHHHHHHHHHHHHhccCcCcHhHHHHHHHHHHHHHHHHHHhcCCCCccc------chhhHHHHHHHHhcCCCCCcchh
Confidence 588999999999988764332 1235688899999999999999999874 578999999999999886522 4
Q ss_pred HHHHHHHHHHHhhcCCCCCcc
Q 006042 542 LAIRRAVDFLLNAQSDDGGWG 562 (663)
Q Consensus 542 ~~i~ra~~~Ll~~Q~~DGgWg 562 (663)
....++.++|++.. ++|.|.
T Consensus 259 w~C~k~~~~ll~~i-~~G~F~ 278 (326)
T PF01122_consen 259 WNCQKALDALLKEI-SQGAFQ 278 (326)
T ss_dssp HHHHHHHHHHHHHH-TTTTT-
T ss_pred hHHHHHHHHHHHHh-hcCCCC
Confidence 67889999999965 588876
No 66
>PLN02592 ent-copalyl diphosphate synthase
Probab=97.12 E-value=0.021 Score=67.08 Aligned_cols=250 Identities=17% Similarity=0.177 Sum_probs=128.3
Q ss_pred HHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCC
Q 006042 293 FKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSK 372 (663)
Q Consensus 293 ~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~ 372 (663)
+..-++.++..+-...||. ....+||||++.+.=.-.|. . .|..-.+++||+++|..| |+|...
T Consensus 74 ~~~~~~~ir~~l~~~~~g~----~S~S~YDTAWVAmVp~~~g~--~-~p~FP~~~~wIl~nQ~~D---GsWG~~------ 137 (800)
T PLN02592 74 IKERVKTVKSMLSSMEDGE----ISISAYDTAWVALVEDINGS--G-TPQFPSSLQWIANNQLSD---GSWGDA------ 137 (800)
T ss_pred HHHHHHHHHHHHhcccCCC----cCCcHHHhHHHhhcccCCCC--C-CCCCHHHHHHHHHccCCC---CCCCCC------
Confidence 4445556666544334432 13467999994433322232 1 366778899999999987 565311
Q ss_pred CcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhc-cc--cCCCcc--ccccCCchhhh
Q 006042 373 GAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQ-DE--KTGGLA--VWERAGASLLL 447 (663)
Q Consensus 373 GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Q-n~--~DGgw~--~~~~~~~~~~l 447 (663)
+ .|+.. -.+-.|..++.||..-. +.++.+.|++.+|.+.= .- ++-... .|+.. -+..+
T Consensus 138 ~--~~~~~----D~ll~TLAcvlAL~~w~----------~~~~~i~rGl~fi~~nl~~~~~~~~~~~pvGFeIi-fP~LL 200 (800)
T PLN02592 138 Y--LFSAH----DRLINTLACVVALKSWN----------LHPEKCEKGMSFFRENICKLEDENAEHMPIGFEVA-FPSLL 200 (800)
T ss_pred C--CcchH----HHHHhHHHHHHHHHHhh----------ccHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEee-HHHHH
Confidence 0 01111 12346888888887642 34578999999997532 11 000000 01100 00111
Q ss_pred hhcCcccccccccccccccCcHHHHHHHHHHhh-----hhCCC--cch----HHHHHHHHHHHHH--HHHhcccCCCccc
Q 006042 448 EWLNPVEFLEDLIVEHTYVECTASAIEAFMLFK-----KLYPH--HRK----KEIENFIVKAVHY--IEDEQTADGSWYG 514 (663)
Q Consensus 448 ~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~-----~~~~~--~~~----~~~~~~i~rav~~--L~~~Q~~DGsw~g 514 (663)
+.. .+..++.|.- ...|..+.... +..++ +.. ...-+.+.. ++| +...|..|||++.
T Consensus 201 e~a------~~lgL~~p~~---~~~l~~i~~~r~~kL~r~~~~~~~~~p~~llhslEgl~~-~dw~~v~~~q~~~GS~~~ 270 (800)
T PLN02592 201 EIA------KNLDIEVPYD---SPVLKEIYAQRNLKLTRIPKDIMHKVPTTLLHSLEGMPG-LDWEKLLKLQCQDGSFLF 270 (800)
T ss_pred HHH------HHcCCCCCCC---cHHHHHHHHhhHHHHhhCchhhhccCcchHHHHHhcccc-CCHHHHhcccCCCCCccC
Confidence 111 1111222221 11222221100 00000 000 001112211 344 6667889999875
Q ss_pred CCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCC-CCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHH
Q 006042 515 NWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDD-GGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSL 593 (663)
Q Consensus 515 ~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D-GgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL 593 (663)
+ +-.||++++. . .-+++.+||.+.++.- ||-... | +.++....|.+-.|
T Consensus 271 S-----PSaTAaaL~~---~--------~d~~cl~YL~~~~~k~~GgVP~v--------y------P~d~fE~LwlVDtL 320 (800)
T PLN02592 271 S-----PSSTAFALMQ---T--------KDENCLEYLNKAVQRFNGGVPNV--------Y------PVDLFEHIWAVDRL 320 (800)
T ss_pred C-----chHHHHHHhc---c--------CchHHHHHHHHHHHHcCCCCCCC--------C------CCcHHHHHHHHHHH
Confidence 3 3477776532 1 1258889998876653 443222 2 35678889999999
Q ss_pred HHcCCCCCCcHHHHHHHHHHHh
Q 006042 594 ISAGQADRDPTPIHRGVKLLIN 615 (663)
Q Consensus 594 ~~ag~~~~~~~~v~r~i~~L~~ 615 (663)
..+|....-.+.|+..++.+-+
T Consensus 321 qRLGIs~hF~~EI~~iLd~iy~ 342 (800)
T PLN02592 321 QRLGISRYFEPEIKECIDYVHR 342 (800)
T ss_pred HHcCCccccHHHHHHHHHHHHH
Confidence 9998764333468888888876
No 67
>PLN02279 ent-kaur-16-ene synthase
Probab=96.71 E-value=0.021 Score=67.34 Aligned_cols=251 Identities=13% Similarity=0.104 Sum_probs=127.7
Q ss_pred HHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCC
Q 006042 292 AFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFS 371 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~ 371 (663)
.+...+++|+..+... + .....||||++.+.=.-.|. . .|..-.+++||+++|..| |+|.....
T Consensus 34 ~~~~~~~~i~~~l~~~------e-~s~s~YDTAWvamv~~~~~~--~-~p~Fp~~~~wil~nQ~~d---GsWg~~~~--- 97 (784)
T PLN02279 34 SFEGTKERIKKMFDKV------E-LSVSSYDTAWVAMVPSPNSQ--Q-APLFPECVKWLLENQLED---GSWGLPHD--- 97 (784)
T ss_pred cchhHHHHHHHHhccC------c-CCCchhhhHHHHhcccCCCC--C-CCCChHHHHHHHhcCCCC---CCCCCCCC---
Confidence 3455666666664321 1 23456999998776544222 1 366778899999999976 66642100
Q ss_pred CCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhh-cccc-CCCc--cccccCCchhhh
Q 006042 372 KGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSL-QDEK-TGGL--AVWERAGASLLL 447 (663)
Q Consensus 372 ~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~-Qn~~-DGgw--~~~~~~~~~~~l 447 (663)
-+|... -.+-.|..++.||..-.. .+..+++++.+|.+. +... +-.. -.|+-. -+..+
T Consensus 98 ---~~~~~~----D~ll~TlAcvlAL~~w~~----------~~~~~~~gl~fi~~n~~~~~d~~~~~pvGfei~-fP~ll 159 (784)
T PLN02279 98 ---HPLLVK----DALSSTLASILALKKWGV----------GEEQINKGLQFIELNSASVTDEKQHKPIGFDII-FPGMI 159 (784)
T ss_pred ---CcchhH----HhhHHHHHHHHHHHHHhc----------CcccchhhHHHHHHHHHhhcccccCCCceEEEe-hHHHH
Confidence 011111 123468889888876542 233456777776531 1110 0000 001100 00111
Q ss_pred hhcCcccccccccccccccCcHHHHHHHHHHhhhh---------CCCcch--HHHHHHHHHHHHH--HHHhcccCCCccc
Q 006042 448 EWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKL---------YPHHRK--KEIENFIVKAVHY--IEDEQTADGSWYG 514 (663)
Q Consensus 448 ~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~---------~~~~~~--~~~~~~i~rav~~--L~~~Q~~DGsw~g 514 (663)
+.. .+..++.++. ...|..+..-.+. +...+. .-..+.+..-++| +.+.|..|||+..
T Consensus 160 ~~a------~~~gl~~~~~---~~~l~~~~~~r~~~l~~~~~~~~~~~~~~l~~s~Egl~~~~dw~~v~~~q~~~Gs~~~ 230 (784)
T PLN02279 160 EYA------KDLDLNLPLG---SEVVDAMLHKRDLDLKSGGGSNTKGREAYLAYVSEGIGKLQDWEMVMKYQRKNGSLFN 230 (784)
T ss_pred HHH------HHcCCCCCCC---hHHHHHHHHhhhHHHhhcchhhcCCCcchHHHHHhhccccccHHHHHhhcCCCCCccc
Confidence 111 1122333322 2333333211100 000000 0011233333344 6788999999865
Q ss_pred CCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC-CccCCCcCCCCccccCCCCCCCcHHHHHHHHHHH
Q 006042 515 NWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG-GWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSL 593 (663)
Q Consensus 515 ~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-gWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL 593 (663)
+ +-.||++++ ..+ -.++.+||.+.++.-| |-... | +.+.....|.+-.|
T Consensus 231 S-----PsaTAa~l~---~~~--------~~~~~~yL~~~~~~~~g~vP~~--------y------p~~~fe~l~lvd~L 280 (784)
T PLN02279 231 S-----PSTTAAAFS---HLQ--------NAGCLRYLRSLLQKFGNAVPTV--------Y------PLDQYARLSMVDTL 280 (784)
T ss_pred C-----cHHHHHHHH---ccC--------ChHHHHHHHHHHHhcCCCCCCC--------C------cccHHHHhHHHHHH
Confidence 3 346776653 211 2688899998877644 32222 1 35678899999999
Q ss_pred HHcCCCCCCcHHHHHHHHHHHh
Q 006042 594 ISAGQADRDPTPIHRGVKLLIN 615 (663)
Q Consensus 594 ~~ag~~~~~~~~v~r~i~~L~~ 615 (663)
..+|....-...|+..++.+-+
T Consensus 281 ~rlGi~~hF~~EI~~~L~~~~~ 302 (784)
T PLN02279 281 ERLGIDRHFRKEIKSVLDETYR 302 (784)
T ss_pred HHhCCccccHHHHHHHHHHHHH
Confidence 9998753222357778777754
No 68
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=96.70 E-value=0.037 Score=59.31 Aligned_cols=243 Identities=17% Similarity=0.122 Sum_probs=127.6
Q ss_pred HHHHHHHHHHH-cCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHh
Q 006042 322 DTALGLQALMA-CNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQL 400 (663)
Q Consensus 322 dTal~~~AL~~-ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~ 400 (663)
+..+++..+.+ .| .+++...+.++.+|+...+.+. ..|.+.. .. ....+--+|...+++..|..+
T Consensus 71 ~~g~~~~~~y~~t~-d~~y~~~~~~~a~~~l~~~~~~-~~G~~~~---~~---------~~~~~~wiD~~~M~~p~l~~~ 136 (336)
T PF07470_consen 71 DIGFLLLDLYERTG-DEKYKDAAIQAADWLLARRPRT-SDGGFWH---NR---------PYPNQVWIDGMYMNLPFLAWA 136 (336)
T ss_dssp THHHHHHHHHHHH--THHHHHHHHHHHHHHHHTSCBE-CTGCBEC---TT---------TSTTEEETTHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHhCCCC-CCCcccc---CC---------CCCCceeeccccccHHHHHHH
Confidence 45555555544 44 4557788999999988877652 1244321 00 111111134444566666655
Q ss_pred cCCCCcccCCC-CCHHHHHHHHHHHHhhccccCCCcc-ccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHH
Q 006042 401 SLMPPEIVGEK-MEPERLYDAVNFLLSLQDEKTGGLA-VWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFML 478 (663)
Q Consensus 401 ~~~~~~~~~~~-~~~~~i~~a~~wLl~~Qn~~DGgw~-~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~ 478 (663)
+.. .+++ ..+.+++.+......+.++++|-|- .+....... .++.. -.-..|-++.+|..
T Consensus 137 ~~~----tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~----------~s~~~----WsRG~gW~~~Gl~~ 198 (336)
T PF07470_consen 137 GKL----TGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYAD----------WSDSF----WSRGNGWAIYGLAE 198 (336)
T ss_dssp HHH----HTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSST----------TST------BHHHHHHHHHHHHH
T ss_pred HHH----HCCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcC----------ccccc----CcchhhHHHHHHHH
Confidence 431 1221 1233444455555556766466552 111111000 00000 01123455555555
Q ss_pred hhhhCCC-c-chHHHHHHHHHHHHHHHHhcccCCCcccCCC------CcchhHHHHHHHHHHH---cCCCc--CChHHHH
Q 006042 479 FKKLYPH-H-RKKEIENFIVKAVHYIEDEQTADGSWYGNWG------ICFIYGTCFALGGLQV---AGKTY--NNCLAIR 545 (663)
Q Consensus 479 ~~~~~~~-~-~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg------~~~~Y~T~~aL~aL~~---~g~~~--~~~~~i~ 545 (663)
.-+..|+ + ..+.+.+..++.++.|.+.|++||.|.-... ...+-+|+.+..||.. .|... ...+.++
T Consensus 199 ~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~ 278 (336)
T PF07470_consen 199 VLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAE 278 (336)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHH
T ss_pred HHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence 4333222 1 2245667788899999999999999974221 1234578888888853 34431 2467889
Q ss_pred HHHHHHHhh-cCCCCC--ccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHc
Q 006042 546 RAVDFLLNA-QSDDGG--WGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISA 596 (663)
Q Consensus 546 ra~~~Ll~~-Q~~DGg--Wg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~a 596 (663)
|+.+.|+++ -++||. +...+..+.-..|.+.+....++...++-|+|+.+.
T Consensus 279 ~a~~~l~~~~~~~dG~~~~~~~~~~~~~~~Y~~~~~~~~~~~G~g~fl~A~~e~ 332 (336)
T PF07470_consen 279 KALEALLSNAIDPDGKLGLKGVCGGTPVGGYQGRDYNVNDPYGDGYFLLALAEY 332 (336)
T ss_dssp HHHHHHHHCEB-TTSSSBBTCEBETTTS-SHHTEEEECCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccCCCCCeEEeeeEeecCCCCCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 999999999 778887 655443332111221111234467888889988764
No 69
>PLN02279 ent-kaur-16-ene synthase
Probab=96.67 E-value=0.048 Score=64.37 Aligned_cols=112 Identities=6% Similarity=-0.025 Sum_probs=69.5
Q ss_pred hhhhcCCCceeeecccchhhccccccccCCCcHHHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCc
Q 006042 259 IHYEDHNSRYITIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADE 338 (663)
Q Consensus 259 i~~~~~~~~~~~~~~v~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~ 338 (663)
+...+..+|-+..+|...+-..+.. -| .+++++|...+- .-+|.-...+..+++...+++-.|...|++-.
T Consensus 218 v~~~q~~~Gs~~~SPsaTAa~l~~~----~~----~~~~~yL~~~~~-~~~g~vP~~yp~~~fe~l~lvd~L~rlGi~~h 288 (784)
T PLN02279 218 VMKYQRKNGSLFNSPSTTAAAFSHL----QN----AGCLRYLRSLLQ-KFGNAVPTVYPLDQYARLSMVDTLERLGIDRH 288 (784)
T ss_pred HHhhcCCCCCcccCcHHHHHHHHcc----CC----hHHHHHHHHHHH-hcCCCCCCCCcccHHHHhHHHHHHHHhCCccc
Confidence 3444455555566676554333221 12 467777766543 23344445557788999999999999999877
Q ss_pred hHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhc
Q 006042 339 VESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLS 401 (663)
Q Consensus 339 ~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~ 401 (663)
|...|+.+++.+.+.-.. |+ ....+|+++||.+.+.|...+
T Consensus 289 F~~EI~~~L~~~~~~~~~----~~------------------~~~~~Dl~~tAl~FRLLR~hG 329 (784)
T PLN02279 289 FRKEIKSVLDETYRYWLQ----GE------------------EEIFLDLATCALAFRILRLNG 329 (784)
T ss_pred cHHHHHHHHHHHHHhhcc----cc------------------cCCCCCHHHHHHHHHHHHHcC
Confidence 778888888888643221 10 011247788888877766544
No 70
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.50 E-value=0.35 Score=52.65 Aligned_cols=274 Identities=14% Similarity=0.068 Sum_probs=132.0
Q ss_pred CCCchHHHHHHHHHHHcC---CCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHH
Q 006042 317 GSQTWDTALGLQALMACN---IADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEG 393 (663)
Q Consensus 317 ~s~vwdTal~~~AL~~ag---~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~a 393 (663)
...+|.++.++.+++.+. -.++..+..+++.+||.+.-... ..|.|...... .|. +. ..-++..+-+++
T Consensus 49 ~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~-~~Gg~~~~~~~--~g~-~~----~~~~~l~~~a~~ 120 (384)
T cd00249 49 DRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDP-DHGGWYFALDQ--DGR-PV----DATKDLYSHAFA 120 (384)
T ss_pred CCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCC-CCCCEEEEEcC--CCC-Cc----ccccchHHHHHH
Confidence 456789999999998753 23445677889999999865432 11444322210 111 00 111357788999
Q ss_pred HHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCcc-ccccCCchhhhhhcCcccccccccccccccCcHHHH
Q 006042 394 LKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLA-VWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASA 472 (663)
Q Consensus 394 l~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~-~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~ 472 (663)
+.|+..+.+. .+++...+..++.++++.+..-+++|++- .+..+ .. + .++ ....++.
T Consensus 121 l~ala~~~~a----t~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~-~~-------~---------~~~-~~~~~h~ 178 (384)
T cd00249 121 LLAAAQAAKV----GGDPEARALAEETIDLLERRFWEDHPGAFDEADPG-TP-------P---------YRG-SNPHMHL 178 (384)
T ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCC-CC-------C---------CCC-CChhHHH
Confidence 9998877542 12334456777788888776642167652 11111 00 0 011 2233444
Q ss_pred HHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhc--ccCCCccc----CCC---------Ccc--hhHHHHHHHHHHHcC
Q 006042 473 IEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQ--TADGSWYG----NWG---------ICF--IYGTCFALGGLQVAG 535 (663)
Q Consensus 473 L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q--~~DGsw~g----~wg---------~~~--~Y~T~~aL~aL~~~g 535 (663)
+.+|..+..... +....+.+++.++.+.+.- .++|++.. .|. +.+ ....+..+..|....
T Consensus 179 ~~all~l~~~tg---d~~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~ 255 (384)
T cd00249 179 LEAMLAAYEATG---EQKYLDRADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRS 255 (384)
T ss_pred HHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhc
Confidence 555554443211 1234456666677666643 34666631 111 111 112233333443332
Q ss_pred CCcCChHHHHHHHHHHHhhc-CC-CCCccCCCcCCCCccccCCCC-CCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q 006042 536 KTYNNCLAIRRAVDFLLNAQ-SD-DGGWGESYKSCPNKIYTPLEG-KRSTVVHTALAVLSLISAGQADRDPTPIHRGVKL 612 (663)
Q Consensus 536 ~~~~~~~~i~ra~~~Ll~~Q-~~-DGgWg~~~~s~~~~~y~~~~g-~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~ 612 (663)
......+.+++.++++.+.- .+ .|||-.+.......... .+ ..+......+|++.|..........+..++..++
T Consensus 256 ~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~~~~~~~--~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~ 333 (384)
T cd00249 256 GQAWLIEKARRLFDLALALGWDPERGGLYYSFLDDGGLLED--DDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAY 333 (384)
T ss_pred CCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeECCCCCccc--ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22113455566666666644 23 36776622111110000 01 1122233455555554442211111245667777
Q ss_pred HHhcCc--cCCCCCC
Q 006042 613 LINSQL--ENGDFPQ 625 (663)
Q Consensus 613 L~~~Q~--~dG~w~~ 625 (663)
+.++.. +.|+|..
T Consensus 334 ~~~~~~d~~~G~w~~ 348 (384)
T cd00249 334 LWRHFIDPEYGLWFG 348 (384)
T ss_pred HHHhcCCCCCCccee
Confidence 776443 3688864
No 71
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals. Absorption, plasma transport and cellular uptake of Cbl in mammals involves three Cbl-transporting proteins, which are listed below in order of increasing Cbl-specificity: Haptocorrin (cobalophilin), which binds Cbl and Cbl-derivatives such as cobinamide; it may play a role in preventing the absorption of cobalamin analogues produced by bacteria. Transcobalamin (TC), which transport Cbl from blood to cells. Intrinsic factor (IF), which promotes Cbl absorption in the ileum by specific receptor-mediated endocytosis. The structure of TC reveals a two-domain structure, an N-terminal alpha(6)-alpha(6) barrel, and a smaller C-terminal domain []. Many interactions between Cbl and its binding site in the interface of the two domains are conserved among the other Cbl transporters. Specificity for Cbl between the different transporters may reside in a beta-hairpin motif found in the smaller C-terminal domain []. ; GO: 0031419 cobalamin binding, 0015889 cobalamin transport; PDB: 3KQ4_A 2PMV_A 2BB5_A 2V3N_A 2BBC_A 2BB6_D 2V3P_A.
Probab=96.02 E-value=0.045 Score=57.64 Aligned_cols=123 Identities=16% Similarity=0.194 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCc--------CC
Q 006042 469 TASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTY--------NN 540 (663)
Q Consensus 469 Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~--------~~ 540 (663)
=+..+.||+..++.+ -..-+.=|.+..+.+..+.+.. ..-.+|.|+.||.-+.... ..
T Consensus 148 ~sL~vLALCv~~~~~-----------~~~~v~kL~~~~~~~~~~~~~~---sVDT~AmA~LALtCv~~~~~~~~~~~~~i 213 (326)
T PF01122_consen 148 YSLGVLALCVHNKRV-----------SLSVVAKLLKAENHNFYHGSQF---SVDTGAMAVLALTCVKNSNPNGPELRRRI 213 (326)
T ss_dssp HHHHHHHHHHTTHHH-----------HHHHHHHHHHHHHSSTSS-STC---HHHHHHHHHHHHHHHHTTTSTTGGGHHHH
T ss_pred hHHHHHHHHccCCCc-----------CHHHHHHHHHHHHhhcccCCCC---CccHHHHHHHHHHHHhccCcCcHhHHHHH
Confidence 356778888766431 1222333444444442211111 1224577778887553321 13
Q ss_pred hHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCC-cHHHHHHHHHHHhcCcc
Q 006042 541 CLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRD-PTPIHRGVKLLINSQLE 619 (663)
Q Consensus 541 ~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~-~~~v~r~i~~L~~~Q~~ 619 (663)
..+|++.++.|++.|.+||.+|.. ++|+.|+.||...+..... .....++++.|++ +.+
T Consensus 214 ~~~i~~~~~kIl~~q~~~G~~GNi-------------------ySTglAmQAL~~~~~~~~~~~w~C~k~~~~ll~-~i~ 273 (326)
T PF01122_consen 214 QQAIRSLVEKILSQQKPNGLFGNI-------------------YSTGLAMQALSVSPSPPSESEWNCQKALDALLK-EIS 273 (326)
T ss_dssp HHHHHHHHHHHHHTB-TTS-BSST-------------------TTHHHHHHHHTT-SS-SSHHHHHHHHHHHHHHH-HHT
T ss_pred HHHHHHHHHHHHHhcCCCCcccch-------------------hhHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH-Hhh
Confidence 456777788889999999999965 2899999999998875321 1358899999998 456
Q ss_pred CCCCCC
Q 006042 620 NGDFPQ 625 (663)
Q Consensus 620 dG~w~~ 625 (663)
+|.|..
T Consensus 274 ~G~F~n 279 (326)
T PF01122_consen 274 QGAFQN 279 (326)
T ss_dssp TTTT-S
T ss_pred cCCCCC
Confidence 899865
No 72
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=95.46 E-value=1.7 Score=47.27 Aligned_cols=216 Identities=14% Similarity=0.019 Sum_probs=112.9
Q ss_pred CccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhh-ccccC-CCccccccCCchhhhhhcCcccccccccccc
Q 006042 386 VSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSL-QDEKT-GGLAVWERAGASLLLEWLNPVEFLEDLIVEH 463 (663)
Q Consensus 386 d~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~-Qn~~D-Ggw~~~~~~~~~~~l~~~~~~e~f~~~~~d~ 463 (663)
++..+|++|.++..+... .+++...+..++++++|.+. ..+ + |||-. ..++++. .....
T Consensus 51 ~~~~~ar~i~~~a~a~~~----~~~~~~l~~A~~~~~fl~~~~~d~-~~Gg~~~-~~~~~g~-------------~~~~~ 111 (384)
T cd00249 51 RLWLQARQVYCFAVAYLL----GWRPEWLEAAEHGLEYLDRHGRDP-DHGGWYF-ALDQDGR-------------PVDAT 111 (384)
T ss_pred eEEEecHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHHhCcCC-CCCCEEE-EEcCCCC-------------Ccccc
Confidence 467899999999876542 13334566788999999984 444 6 99842 2111111 00111
Q ss_pred cccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcc-cCCCcccC----CC-C--cchhH-HHHHHHHHHHc
Q 006042 464 TYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQT-ADGSWYGN----WG-I--CFIYG-TCFALGGLQVA 534 (663)
Q Consensus 464 ~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~-~DGsw~g~----wg-~--~~~Y~-T~~aL~aL~~~ 534 (663)
.+.+.-+++|.+|+.+..... +++..+..++.+++|.+... ++|+++.. +. . ...|. .+.++..+..+
T Consensus 112 ~~l~~~a~~l~ala~~~~at~---d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~ 188 (384)
T cd00249 112 KDLYSHAFALLAAAQAAKVGG---DPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEA 188 (384)
T ss_pred cchHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHH
Confidence 246677899999998765432 23456778899999988774 45655411 11 0 11121 23344444433
Q ss_pred -CCCcCChHHHHHHHHHHHhhc--CCCCCccCCCcCCCCccccCCCC---CCCcHHHHHHHHHHHHHcCCCCCCcHHHHH
Q 006042 535 -GKTYNNCLAIRRAVDFLLNAQ--SDDGGWGESYKSCPNKIYTPLEG---KRSTVVHTALAVLSLISAGQADRDPTPIHR 608 (663)
Q Consensus 535 -g~~~~~~~~i~ra~~~Ll~~Q--~~DGgWg~~~~s~~~~~y~~~~g---~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r 608 (663)
|.. ...+.+++.++.+...- .++|++-+.......+ .....+ .+++....+|+|+.|........-.+.+++
T Consensus 189 tgd~-~~~~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~-~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~ 266 (384)
T cd00249 189 TGEQ-KYLDRADEIADLILDRFIDAESGVVREHFDEDWNP-YNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARR 266 (384)
T ss_pred hCCH-HHHHHHHHHHHHHHHHhcCcccCeEEEEECCCCCC-CcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 221 12334455555555542 3467765432110000 000001 134456678888887765322111234566
Q ss_pred HHHHHHhcCc-c-CCCCCC
Q 006042 609 GVKLLINSQL-E-NGDFPQ 625 (663)
Q Consensus 609 ~i~~L~~~Q~-~-dG~w~~ 625 (663)
.++++.+.-- + .|+|..
T Consensus 267 ~~~~~~~~~~d~~~G~~~~ 285 (384)
T cd00249 267 LFDLALALGWDPERGGLYY 285 (384)
T ss_pred HHHHHHHhCcCccCCCEEE
Confidence 6666666442 2 366654
No 73
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=95.37 E-value=2.5 Score=49.25 Aligned_cols=258 Identities=16% Similarity=0.061 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHh
Q 006042 321 WDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQL 400 (663)
Q Consensus 321 wdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~ 400 (663)
-|.+++++||..+|.. +..+++.+||.+.|..+ |.|...| ...|-..- .+. -.|.|++.|.++..+
T Consensus 298 RD~a~~a~AL~~~G~~----~~a~~~~~~l~~~~~~~---G~~lq~y---~vdG~~~~---~~i-QlD~~g~~i~~~~~l 363 (648)
T TIGR01535 298 RDLYQVANAFLAAGDV----DSALRSLDYLAKVQQDN---GMFPQNS---WVDGKPYW---TGI-QLDETAFPILLAYRL 363 (648)
T ss_pred hhHHHHHHHHHHCCCH----HHHHHHHHHHHHHhccC---CCcCcee---ccCCCCCC---CCc-cccHHHHHHHHHHHH
Confidence 4899999999999974 45789999999999875 6653222 12221110 111 258999999988766
Q ss_pred cCCCCcccCCCCCHHHHHHHHHHHHhhccccC-CCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHh
Q 006042 401 SLMPPEIVGEKMEPERLYDAVNFLLSLQDEKT-GGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLF 479 (663)
Q Consensus 401 ~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~D-Ggw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~ 479 (663)
.+. +.....+.++++++||.+.-...| |=| |... ..+..+.+.++.+|...
T Consensus 364 ~~~-----~~~~~~~~vk~aadfl~~~~p~p~~d~W---Eer~--------------------g~~~~T~a~v~aaL~~A 415 (648)
T TIGR01535 364 HRY-----DHAFYDKMLKPAADFIVKNGPKTGQERW---EEIG--------------------GYSPSTLAAEIAGLTAA 415 (648)
T ss_pred HHc-----CcHHHHHHHHHHHHHHHHcCCCCCCCcc---cccC--------------------CcCchhHHHHHHHHHHH
Confidence 432 111234679999999987543211 123 2111 01344556666565544
Q ss_pred hhhCCCcchHHHHHHHHHHHHH----HHH-hcccCCCcc-----cCC---C-------------Ccchh---HHHHHHHH
Q 006042 480 KKLYPHHRKKEIENFIVKAVHY----IED-EQTADGSWY-----GNW---G-------------ICFIY---GTCFALGG 530 (663)
Q Consensus 480 ~~~~~~~~~~~~~~~i~rav~~----L~~-~Q~~DGsw~-----g~w---g-------------~~~~Y---~T~~aL~a 530 (663)
.+...........+.-++..+. +.+ .-+++|... -+. + ....| ..-..+..
T Consensus 416 a~iA~~~g~~~~a~~w~~~Ad~i~~~i~~~~~~~~g~~~~~~~f~r~~~~~~~~~~~~~~~~n~~~~~~~~~~vDaSlL~ 495 (648)
T TIGR01535 416 ADIAEQNGDAGSAQKYRETADNWQKLIENWTFTTNGPLGDGQYYLRIAGLGDPNADFLINIANGGGVYPEKEVLDPGFLE 495 (648)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCCCcccCCCCeEEEeecCCCCccccccccccccccCCCCCccCHHHHH
Confidence 3221100000111122222222 222 234442221 000 0 00001 11234566
Q ss_pred HHHcCCCcCChHHHHHHHHHHHhhcCCC----CCccCCCc-CCCC----ccccCCCCCCCcHHHHHHHHHHHHHcCCCCC
Q 006042 531 LQVAGKTYNNCLAIRRAVDFLLNAQSDD----GGWGESYK-SCPN----KIYTPLEGKRSTVVHTALAVLSLISAGQADR 601 (663)
Q Consensus 531 L~~~g~~~~~~~~i~ra~~~Ll~~Q~~D----GgWg~~~~-s~~~----~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~ 601 (663)
|..+|....+++.+.+.++-+.+.-..| |+|..... .+.. ..|.+-..+..-+..|.|--.-.+.++.
T Consensus 496 L~~~G~~~~dDPri~~Tl~aIe~~L~~~~~~~g~~~RY~~Dgyg~~~~~~~~~~~~~G~~Wpi~T~~~~~y~l~~~~--- 572 (648)
T TIGR01535 496 LVRLGVKSPDDPHILATLKEIDSTIKVDTPKGPSWYRYTHDGYGEPAKTEAYDGTGKGRLWPLLTGERGHYELAAGK--- 572 (648)
T ss_pred HHHcCCcCCCCHHHHHHHHHHHHHhccCCCCCCeEEecCCCCCCCcCCCCCccCCcCCceeehhhhHHHHHHHHcCC---
Confidence 7778876667899999998888777665 66743211 1100 0010000023345566654444344442
Q ss_pred CcHHHHHHHHHHHhcCccCCCCCCC
Q 006042 602 DPTPIHRGVKLLINSQLENGDFPQQ 626 (663)
Q Consensus 602 ~~~~v~r~i~~L~~~Q~~dG~w~~~ 626 (663)
....-++|+...-++.|-.||+
T Consensus 573 ---~a~~~l~~~~~~a~~~g~lpEQ 594 (648)
T TIGR01535 573 ---DATPYLKAMEKFANEGGMIPEQ 594 (648)
T ss_pred ---hHHHHHHHHHHhcCcCCCcCcc
Confidence 2457889999988887777665
No 74
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=94.80 E-value=0.92 Score=52.92 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=73.1
Q ss_pred cchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccc-cccCCchhhhhhcCccccccccccc-ccc
Q 006042 388 DCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAV-WERAGASLLLEWLNPVEFLEDLIVE-HTY 465 (663)
Q Consensus 388 d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~-~~~~~~~~~l~~~~~~e~f~~~~~d-~~~ 465 (663)
-|++++++||..++ ..+..++.++||.+.|.+ ||+|.. +-.+-+. . ..+ ..-
T Consensus 298 RD~~~~a~Al~~~G-----------~~~~a~~~l~~l~~~q~~-~G~~~~~~~~dG~~-----------~---~~~~~~Q 351 (616)
T TIGR01577 298 RDASYIATALDRAG-----------YHDRVDRFFRWAMQTQSR-DGSWQQRYYLNGRL-----------A---PLQWGLQ 351 (616)
T ss_pred ccHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhhCc-CCCcceEEecCCCC-----------C---CCCCCcc
Confidence 48999999998875 346778999999999999 999831 1111000 0 001 123
Q ss_pred cCcHHHHHHHHHHhhhhCCCc-chHHHHHHHHHHHHHHHHhccc------CCCcccCCCCcchhHHHHHHHHHHHc
Q 006042 466 VECTASAIEAFMLFKKLYPHH-RKKEIENFIVKAVHYIEDEQTA------DGSWYGNWGICFIYGTCFALGGLQVA 534 (663)
Q Consensus 466 ~~~Ta~~L~aL~~~~~~~~~~-~~~~~~~~i~rav~~L~~~Q~~------DGsw~g~wg~~~~Y~T~~aL~aL~~~ 534 (663)
.|.++.+|-++..+.....+. -.+++-+.|+++++|+.+...+ .|-|..+.|. ++|..+....||..+
T Consensus 352 ~D~~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~~l~~~~~~lWEer~G~-~~~t~a~~~aAL~~a 426 (616)
T TIGR01577 352 IDETGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDPETPLPCRDLWEEREGV-FTYTASAVYGGLDAA 426 (616)
T ss_pred ccchhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccceecCCc-cCccHHHHHHHHHHH
Confidence 566888888776543221111 1123446799999999996532 3445544443 566666666666543
No 75
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.35 Score=60.63 Aligned_cols=217 Identities=20% Similarity=0.232 Sum_probs=116.8
Q ss_pred HHHHHHhhhheecCCCce---eec-CCCCchHHHHHHHHHHHcCCCCch-HHHHHHHHHHHHhhcccCCCCCCccccCCC
Q 006042 295 KHLNRIADYIWLGEDGMK---VQT-FGSQTWDTALGLQALMACNIADEV-ESVLGKGHDYLKKAQIRDNPVGDYKGNFRH 369 (663)
Q Consensus 295 ~~~~~l~~~~~~~~~g~~---~~~-~~s~vwdTal~~~AL~~ag~~~~~-~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~ 369 (663)
.+.++...| ..+||.+ ... ...++|.|++++..+.++...-.+ ...+.+|.+||...|..+ |+|...
T Consensus 975 ~GyqrqL~y--k~~DgSySaFg~~~~~~stWLtafvlr~f~~a~~~i~id~~~i~~a~~wl~~~Qk~~---GsF~e~--- 1046 (1436)
T KOG1366|consen 975 QGYQRQLTY--KRADGSYSAFGSSDRSGSTWLTAFVLRVFSQAKEYIFIDPNVITQALNWLSQQQKEN---GSFKEV--- 1046 (1436)
T ss_pred HHHHHHHhh--hccCCChhhhcCCCCcccHHHHHHHHHHhhhccCceEecHHHHHHHHHHHHHhhccC---ceEecc---
Confidence 344444444 4577743 221 256899999999999998643221 568999999999998765 777532
Q ss_pred CCCCcccCccC-CCCCCCc-cchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhh
Q 006042 370 FSKGAWTFSDQ-DHGWQVS-DCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLL 447 (663)
Q Consensus 370 ~~~GgW~fs~~-~~~~pd~-d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l 447 (663)
|+-+... ..+..+. -.|+.++..+.. +....+.+++.|+.+.=.. |+-
T Consensus 1047 ----~~v~~~~~qg~l~~~~~l~~~~l~~~~~------------~~~~~~~~a~~~~~~~~~~--~~~------------ 1096 (1436)
T KOG1366|consen 1047 ----GEVLHNEMQGGLQDIVALTAIVLSVILD------------VDNASIQKAVAYLEESLDS--GSM------------ 1096 (1436)
T ss_pred ----ccccchhhhcCCCCcceeeeEeeeeecc------------chhhHHHHHHHHHhhccCc--ccc------------
Confidence 2233211 1222222 334443322211 1145678888888544332 211
Q ss_pred hhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhccc-CCCccc------CCC---
Q 006042 448 EWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTA-DGSWYG------NWG--- 517 (663)
Q Consensus 448 ~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~-DGsw~g------~wg--- 517 (663)
.++.-+....||...+. |. ....+.+ ++.+.+.-.+ ...|.. .++
T Consensus 1097 -----------------~~~~~a~~ayAl~l~~s--p~-----a~~~~~~-l~~~a~~~~d~~~~~~~~~~~~~~~~~~~ 1151 (1436)
T KOG1366|consen 1097 -----------------DVYTVAITAYALQLAKS--PQ-----AAKALAK-LKSLARVEGDRRYWWASALKAKNAVKYSP 1151 (1436)
T ss_pred -----------------ccchHHHHHHHHHhccC--ch-----HHHHHHh-hhhhhcccCCceeeeeccccccCcccCCC
Confidence 11112233333433321 21 1122333 3333222111 122221 111
Q ss_pred ---CcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHH
Q 006042 518 ---ICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLI 594 (663)
Q Consensus 518 ---~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~ 594 (663)
....-.|++||.++...... . .+...++||.+.|+..|||.... .|.-||.||.
T Consensus 1152 q~~s~~VE~tsYaLL~~~~~~~~---~-~~~pivrWl~~qr~~~GGf~STQ-------------------dTvvalqaLs 1208 (1436)
T KOG1366|consen 1152 QARSIDVETTAYALLAYLLLAQV---D-YALPIVRWLVEQRNALGGFSSTQ-------------------DTVVALQALS 1208 (1436)
T ss_pred ccchhhccchHHHHHHHHHhccc---C-cCchhHhhhhhhhcccCceeehH-------------------HHHHHHHHHH
Confidence 01223789999888776553 1 56677889999999999998651 6778888887
Q ss_pred HcC
Q 006042 595 SAG 597 (663)
Q Consensus 595 ~ag 597 (663)
...
T Consensus 1209 ~y~ 1211 (1436)
T KOG1366|consen 1209 EYA 1211 (1436)
T ss_pred Hhh
Confidence 643
No 76
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=93.77 E-value=2.1 Score=49.71 Aligned_cols=271 Identities=14% Similarity=0.093 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCc------cc-CccCCCCCCC-ccchHH
Q 006042 321 WDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGA------WT-FSDQDHGWQV-SDCTAE 392 (663)
Q Consensus 321 wdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~Gg------W~-fs~~~~~~pd-~d~Ta~ 392 (663)
-|++.++.||..+|.. ....+..+||.+.|..+ |.|...|. ..| |. .+...+.+|. ++.|+.
T Consensus 288 RD~~~~~~AL~~~G~~----~~a~~~f~~l~~~~~~~---~~~~~~y~---~~g~~~~~~w~~~~~~~~~~pv~~~~~a~ 357 (612)
T COG3387 288 RDASYAALALLAIGYK----KEALRFFEFLPDVQTPN---GKLYHKYS---IDGSDLAESWLPVSGYYNSFPVRIGNTAL 357 (612)
T ss_pred CcHHHHHHHHHHcCCH----HHHHHHHHHHHHhhCCC---CceeeEEe---cCCCccccccccccCCCCCCceEEcchhh
Confidence 4899999999999974 45788899999999876 34444442 223 21 1111134454 577888
Q ss_pred HHHHHHHhcCCCCccc-CCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHH
Q 006042 393 GLKCVLQLSLMPPEIV-GEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTAS 471 (663)
Q Consensus 393 al~aL~~~~~~~~~~~-~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~ 471 (663)
..-+|....+.-.+.. -.......+..+.+++.++-+. .=+|..-. ..-|-+. ++ -++..++.
T Consensus 358 ~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~---~~~WEer------~g------~~~yt~~~ 421 (612)
T COG3387 358 VQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRRMEKI-KANLPTPD---FDLWEER------GG------HFTYTKAT 421 (612)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhh-hcCCCCCc---cceeccc------CC------cccchHHH
Confidence 7777654221100000 0001122334445555441111 11221000 0011000 00 12333444
Q ss_pred HHHHHHH---hhhhCCC-cchHHHHHHHHHHHHHHHHh-cccC-CCcccCCCC--cchhHHHHHHHHHHHcCCCcCChHH
Q 006042 472 AIEAFML---FKKLYPH-HRKKEIENFIVKAVHYIEDE-QTAD-GSWYGNWGI--CFIYGTCFALGGLQVAGKTYNNCLA 543 (663)
Q Consensus 472 ~L~aL~~---~~~~~~~-~~~~~~~~~i~rav~~L~~~-Q~~D-Gsw~g~wg~--~~~Y~T~~aL~aL~~~g~~~~~~~~ 543 (663)
+..+|-. +.....+ ...+......++--+.+.+. -..+ |.|.-..+. ..++. .++.+|..+|....+++.
T Consensus 422 ~~agLd~A~~lA~~~gd~~~a~~~~~~ad~ik~~v~~~~~~~~~~~f~r~~~~~~~~~vD--asll~l~~fg~i~~~D~~ 499 (612)
T COG3387 422 VYAGLDAAADLAEEFGDKGSAEHWRKTADELKEAVLRRGYAEDGGYFVRSLGRKPDDTVD--ASLLGLVLFGFIPPDDPR 499 (612)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhcccccCCeeehhcCCCcccccc--HHHhhccccCccCCCCHH
Confidence 4444433 3222111 11112222333333333333 2334 444333332 23333 345666667776656788
Q ss_pred HHHHHHHHHhhcCCCC-CccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCC
Q 006042 544 IRRAVDFLLNAQSDDG-GWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGD 622 (663)
Q Consensus 544 i~ra~~~Ll~~Q~~DG-gWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~ 622 (663)
+.+.++-|.+.-..+| ||..... -.+..+.. ++.+-+..|.|-...+...|..+ .+++.++||++++.++|-
T Consensus 500 ~~~t~~~I~~~L~~~~~gi~RY~~-~~~d~~~~--~~~~w~i~t~Wl~~~~~~~g~~~----~a~~ll~~l~~~a~~~gl 572 (612)
T COG3387 500 ILATVEAIERELLVDGGGIRRYNN-EYDDGLGG--DNGPWIITTLWLSEYYLALGRLD----EAKKLLEWLLAFASPLGL 572 (612)
T ss_pred HHHHHHHHHHHHhhcCCcEEcCcc-ccccccCC--CCCcceeehhHHHHHHHHccchH----HHHHHHHHHHHhcCCCCC
Confidence 8898988888888877 6654321 00111110 12255667899999999988752 578889999999999999
Q ss_pred CCCC
Q 006042 623 FPQQ 626 (663)
Q Consensus 623 w~~~ 626 (663)
.+|+
T Consensus 573 l~EQ 576 (612)
T COG3387 573 LPEQ 576 (612)
T ss_pred cchh
Confidence 8765
No 77
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=93.62 E-value=2.4 Score=49.35 Aligned_cols=159 Identities=14% Similarity=0.134 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHHhhcccCCCCCCccccCCC---CCCC---cccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCC
Q 006042 338 EVESVLGKGHDYLKKAQIRDNPVGDYKGNFRH---FSKG---AWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEK 411 (663)
Q Consensus 338 ~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~---~~~G---gW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~ 411 (663)
+....+++++-=|+..+..+ +.|..-..... -..| .|+|. ..|| -|.++++.||..++
T Consensus 248 ~~~~~~~rS~lvLK~~~d~~-~~GAiIAA~Tts~pe~~g~~~n~dYr---yvW~--RD~a~~a~AL~~~G---------- 311 (648)
T TIGR01535 248 KGNSLYYVSMMILKAHEDKT-NPGAYIASLSIPWGDGQADDNTGGYH---LVWP--RDLYQVANAFLAAG---------- 311 (648)
T ss_pred hHHHHHHHHHHHHHHhcCCC-CCCcEEEecCCCCCccCCCCCCCceE---EEeh--hhHHHHHHHHHHCC----------
Confidence 44566777776676666542 22443211100 0112 24442 2344 58999999999876
Q ss_pred CCHHHHHHHHHHHHhhccccCCCcc-ccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHH
Q 006042 412 MEPERLYDAVNFLLSLQDEKTGGLA-VWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKE 490 (663)
Q Consensus 412 ~~~~~i~~a~~wLl~~Qn~~DGgw~-~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~ 490 (663)
+.+..++.++||.+.|.+ ||.|- -|..+-...|. .--.|.||..|.++-.+.+.. . ..
T Consensus 312 -~~~~a~~~~~~l~~~~~~-~G~~lq~y~vdG~~~~~---------------~iQlD~~g~~i~~~~~l~~~~--~--~~ 370 (648)
T TIGR01535 312 -DVDSALRSLDYLAKVQQD-NGMFPQNSWVDGKPYWT---------------GIQLDETAFPILLAYRLHRYD--H--AF 370 (648)
T ss_pred -CHHHHHHHHHHHHHHhcc-CCCcCceeccCCCCCCC---------------CccccHHHHHHHHHHHHHHcC--c--HH
Confidence 346678999999999999 99872 12222111111 013578999988776554321 1 23
Q ss_pred HHHHHHHHHHHHHHhcc--cCCCcccCCCCcchhHHHHHHHHHHHc
Q 006042 491 IENFIVKAVHYIEDEQT--ADGSWYGNWGICFIYGTCFALGGLQVA 534 (663)
Q Consensus 491 ~~~~i~rav~~L~~~Q~--~DGsw~g~wg~~~~Y~T~~aL~aL~~~ 534 (663)
+.+.|+++++||.+... .-|-|..+-|. .+|..+.++.||..+
T Consensus 371 ~~~~vk~aadfl~~~~p~p~~d~WEer~g~-~~~T~a~v~aaL~~A 415 (648)
T TIGR01535 371 YDKMLKPAADFIVKNGPKTGQERWEEIGGY-SPSTLAAEIAGLTAA 415 (648)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcccccCCc-CchhHHHHHHHHHHH
Confidence 45689999999999743 23666655443 345555555666543
No 78
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=92.48 E-value=11 Score=39.95 Aligned_cols=72 Identities=19% Similarity=0.160 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCcccCC--CCcc----hhHHHHHHHHHHH---cCCCc-CChHHHHHHHHHHHhhcCC
Q 006042 488 KKEIENFIVKAVHYIEDEQTADGSWYGNW--GICF----IYGTCFALGGLQV---AGKTY-NNCLAIRRAVDFLLNAQSD 557 (663)
Q Consensus 488 ~~~~~~~i~rav~~L~~~Q~~DGsw~g~w--g~~~----~Y~T~~aL~aL~~---~g~~~-~~~~~i~ra~~~Ll~~Q~~ 557 (663)
+.++.+.++..++=|++.|.++|-|...- |... +-+|+.-..||.. .|... +..+.++||.+-|+.+-.+
T Consensus 227 r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~ 306 (357)
T COG4225 227 RRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDE 306 (357)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhccc
Confidence 35577889999999999999999997421 1122 2366666666665 45432 3468999999999999876
Q ss_pred CC
Q 006042 558 DG 559 (663)
Q Consensus 558 DG 559 (663)
+|
T Consensus 307 ~g 308 (357)
T COG4225 307 EG 308 (357)
T ss_pred cc
Confidence 55
No 79
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=90.87 E-value=8.8 Score=40.59 Aligned_cols=238 Identities=16% Similarity=0.171 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHhhhhcCCCceeeecccchhhcccccc--ccCCCcHHHHHHHHHHhhhheecC---CC-c-eeecCCCCc
Q 006042 248 RQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACW--VEDPNGIAFKKHLNRIADYIWLGE---DG-M-KVQTFGSQT 320 (663)
Q Consensus 248 r~~a~~~~~~~i~~~~~~~~~~~~~~v~~~l~~l~~~--~~~p~~~~~~~~~~~l~~~~~~~~---~g-~-~~~~~~s~v 320 (663)
-++-++...++....-..++ +..--++.+.+.+.+. .+.-.+|.+.++...+.+++...+ +| + +.-.+.-|+
T Consensus 54 d~~yl~~l~~~~d~~i~~~g-~~~~~id~i~~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q~ 132 (357)
T COG4225 54 DAEYLDYLKTWFDEQIDEGG-LPPRNIDHIAAGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPHQM 132 (357)
T ss_pred cHHHHHHHHHHHHhhhccCC-CCccchhhhccCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCchhHh
Confidence 34555555555543322232 2222244544444442 234567777777777777765332 23 2 233356789
Q ss_pred hHHHHHHHHHH--HcCC----CCchHHHHHHHHHHHHhhcccCCC-CCCccccCCCCCCCcccCccCCCCCCCccc--hH
Q 006042 321 WDTALGLQALM--ACNI----ADEVESVLGKGHDYLKKAQIRDNP-VGDYKGNFRHFSKGAWTFSDQDHGWQVSDC--TA 391 (663)
Q Consensus 321 wdTal~~~AL~--~ag~----~~~~~~~l~ka~~wL~~~Q~~~~~-~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~--Ta 391 (663)
|+-++.+-++. +.|. ++.+++. ..+|....+...++ -|=|-..+.....+-|.- +..+.|..+. -+
T Consensus 133 W~DtL~Ma~~F~ak~g~~~~~~e~~d~~---~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~--~~sG~~~fWaRg~g 207 (357)
T COG4225 133 WLDTLYMAGLFLAKYGQVTGRPEYFDEA---LYQFSLHEKYLRDPETGLYYHGWDEDGTMPWAN--NESGEPAFWARGNG 207 (357)
T ss_pred hhcchhhhhHHHHHHHHHhCCHHHHHHH---HHHHHHHHHHccCCCcCceEEeeccCCCCcccc--ccCCCceeeecccc
Confidence 98776555543 2232 2222222 23555555443322 243321111111112221 1122233332 11
Q ss_pred HHHHHHHHh-cCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccC-CchhhhhhcCcccccccccccccccCcH
Q 006042 392 EGLKCVLQL-SLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERA-GASLLLEWLNPVEFLEDLIVEHTYVECT 469 (663)
Q Consensus 392 ~al~aL~~~-~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~-~~~~~l~~~~~~e~f~~~~~d~~~~~~T 469 (663)
-+++||..+ ..+|...-+...-...+++.++-|.++|.. +|=|-.--.+ +. .++.+.+
T Consensus 208 W~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde-~GlW~tiLDd~~~-------------------~sy~EsS 267 (357)
T COG4225 208 WYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDE-SGLWHTILDDGRP-------------------GSYLESS 267 (357)
T ss_pred hHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhcc-ccchhhhhccCCC-------------------CCchhhh
Confidence 222222221 122211000112245778899999999997 9999543211 11 1345555
Q ss_pred HHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCC
Q 006042 470 ASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGS 511 (663)
Q Consensus 470 a~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGs 511 (663)
|.|+-+-+.+.....++-.++..+.++||++=|+.+-.++|-
T Consensus 268 aSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~~i~~~g~ 309 (357)
T COG4225 268 ASAGFAYALLKGINLGILDPEYAPVAEKALDALLGHIDEEGE 309 (357)
T ss_pred HHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHhhcccccc
Confidence 555555554443322333334557899999999999877654
No 80
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=90.85 E-value=17 Score=41.54 Aligned_cols=284 Identities=12% Similarity=0.057 Sum_probs=133.0
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCcc----ccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHH
Q 006042 340 ESVLGKGHDYLKKAQIRDNPVGDYK----GNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPE 415 (663)
Q Consensus 340 ~~~l~ka~~wL~~~Q~~~~~~G~~~----~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~ 415 (663)
.+..+...++++..|.+... ..+. ........|||.-......+.+ .++..-|.|+..+-.. .+++.-.+
T Consensus 10 ~~~~~~~~~~~l~~~~d~ll-~~~r~~agl~~~~~~~g~we~~~~~~~~~~-~~~g~wl~a~a~~~~~----~~D~~l~~ 83 (520)
T PF07944_consen 10 KRRQELNRAYLLPLDPDRLL-YNFRSHAGLPNFAIAYGGWEGEFPGWWFRG-HDVGKWLEAAAYAYAY----TGDPELKA 83 (520)
T ss_pred HHHHHHHHHHHHHhHHHHHh-hhcCcccCCCCccccCCCCccCCCCCccCC-CcHHHHHHHHHHHHHH----CCCHHHHH
Confidence 45566666777766543210 0111 1122334677762222233333 2455555554433211 12334567
Q ss_pred HHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHH
Q 006042 416 RLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFI 495 (663)
Q Consensus 416 ~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i 495 (663)
.+++.|++|.++|.+ ||-.+++..... ..+...|.+ +....++....+++|........ .+..-+.+
T Consensus 84 ~~d~~V~~l~~~Q~~-dGYl~~~~~~~~------~~~~~~w~~---~~he~Y~~~~ll~gl~~~y~~tG---~~~~L~v~ 150 (520)
T PF07944_consen 84 KADEIVDELAAAQQP-DGYLGTYPEERN------FNPDDRWAP---DMHELYCLGKLLEGLIDYYEATG---NERALDVA 150 (520)
T ss_pred HHHHHHHHHHHhccC-Cceecccccccc------cccccCCCC---CccceehHhHHHHHHHHHHHHHC---cHHHHHHH
Confidence 899999999999999 998777765430 001111221 11225677888888887654321 23456788
Q ss_pred HHHHHHH---HHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC--CccCCCcCCCC
Q 006042 496 VKAVHYI---EDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG--GWGESYKSCPN 570 (663)
Q Consensus 496 ~rav~~L---~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG--gWg~~~~s~~~ 570 (663)
.|.++|+ .+...++ .+. .++.+.-.+.-.+|.=|...- .++...+.++++....-.|- -+... +
T Consensus 151 ~k~ad~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~l~~LY~~T----gd~~yL~lA~~f~~~~~~~~~~~~~~~-----d 219 (520)
T PF07944_consen 151 TKLADWVYRRLSRLGPE-PGQ-KMGYPEHGGINEALVRLYEIT----GDERYLDLAEYFVDQRGFDPYDLAYGQ-----D 219 (520)
T ss_pred HHHHHHHHHHhccCCHH-Hhh-cccccccchHHHHHHHHHHHh----CCHHHHHHHHHHHHHhCCCCCchhhcC-----c
Confidence 8999999 4433332 111 112221223333443333322 13444444455554432221 11100 0
Q ss_pred ccccCCCCC-----CCcHHHHHHHHHHHH---HcCCCCCCcHHHHHHHHHHHhcCc-cCCCCCCC---ccccc-cccccc
Q 006042 571 KIYTPLEGK-----RSTVVHTALAVLSLI---SAGQADRDPTPIHRGVKLLINSQL-ENGDFPQQ---EIMGV-FMRNCM 637 (663)
Q Consensus 571 ~~y~~~~g~-----~s~~~~Ta~ALlaL~---~ag~~~~~~~~v~r~i~~L~~~Q~-~dG~w~~~---~~~g~-f~~~~~ 637 (663)
. +++. .++++...|.+.+.+ .....+...+++++..+.+..++. ..|+.... +.-+. +--+-.
T Consensus 220 -~---~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~~~E~f~~~~~lp~~ 295 (520)
T PF07944_consen 220 -H---LPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDHEGEHFGPPYDLPNR 295 (520)
T ss_pred -c---CCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCCCCccCCCCCCCCcC
Confidence 0 0111 122222222222222 221111112355666666666554 56777655 32222 222234
Q ss_pred cccCCccchHHHHHHHHHHH
Q 006042 638 LHYAEYRNIFPLRALAEYRK 657 (663)
Q Consensus 638 ~~y~~y~~~~pl~AL~~y~~ 657 (663)
..|...+..+-++-|+++.-
T Consensus 296 ~~~~EtCas~~~~~~~~~L~ 315 (520)
T PF07944_consen 296 LAYAETCASVNMMKLARRLF 315 (520)
T ss_pred CCCccccHHHHHHHHHHHHH
Confidence 55567788888888877643
No 81
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.45 E-value=72 Score=34.61 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHH
Q 006042 321 WDTALGLQALMACNIA---DEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCV 397 (663)
Q Consensus 321 wdTal~~~AL~~ag~~---~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL 397 (663)
=|.+...++|..+... +-....-++.++||.+.-..+. ..+-|-| -.+.+-.+|
T Consensus 109 VEaa~la~aL~~a~~~lW~~L~~~~k~~l~~wL~~~~~~~~------------~~nNW~l-----------F~v~v~~~L 165 (361)
T PF10022_consen 109 VEAASLALALLRAPEWLWDPLDEEEKENLVDWLKQIRGIKP------------PDNNWLL-----------FRVMVEAFL 165 (361)
T ss_pred hHHHHHHHHHHHCHHHHHhhCCHHHHHHHHHHHHhcCcCCC------------ccchhHH-----------HHHHHHHHH
Confidence 3788899999876410 0013456778899985433221 1122322 345555555
Q ss_pred HHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHH
Q 006042 398 LQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFM 477 (663)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~ 477 (663)
..+ |.+.+.+.++.+++-+.+..-. .||-. +... ...|+ -.+.++.-..
T Consensus 166 ~~~--------G~~~d~~~i~~~l~~~e~~Y~G--dGWY~-DG~~----------------~~~DY----Yns~aih~y~ 214 (361)
T PF10022_consen 166 KKV--------GEEYDEERIDYDLERIEEWYLG--DGWYS-DGPE----------------FQFDY----YNSWAIHPYL 214 (361)
T ss_pred HHc--------CCCCcHHHHHHHHHHHHHHhcc--CCccc-cCCc----------------cCCcc----hHHHHHHHHH
Confidence 544 4457889999999999998875 45621 1110 01232 1244444333
Q ss_pred Hh-hhhCCCcchHHHHHHHHHHHHHHHHh---cccCCCcccCCCCcchh--HHHHHHHHHHHcCC
Q 006042 478 LF-KKLYPHHRKKEIENFIVKAVHYIEDE---QTADGSWYGNWGICFIY--GTCFALGGLQVAGK 536 (663)
Q Consensus 478 ~~-~~~~~~~~~~~~~~~i~rav~~L~~~---Q~~DGsw~g~wg~~~~Y--~T~~aL~aL~~~g~ 536 (663)
.. .+..++...+..+...+|+.+|.... -.+||+.. -+|.+-+| ++...+.+++.++.
T Consensus 215 l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~f~~dG~~~-~~GRSltYRfA~~a~~~~~a~~~~ 278 (361)
T PF10022_consen 215 LLYARLMGDEDPERAARYRQRAQRFAEDYERMFSPDGAAP-PFGRSLTYRFAAFAFLAAAALAGV 278 (361)
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHcCCCCCcC-CccccHHHHHHHHHHHHHHHHcCC
Confidence 21 11112222223455677788887665 46899764 35555555 66666666666666
No 82
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=72.38 E-value=1e+02 Score=32.31 Aligned_cols=95 Identities=18% Similarity=0.033 Sum_probs=47.8
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCC
Q 006042 324 ALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLM 403 (663)
Q Consensus 324 al~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~ 403 (663)
.+++..+.+. ..+++.+.++++.++|.+....+. .+..+.. ....-.+| ...++-++.+|..+.+.
T Consensus 89 ~~~ll~l~~~-~~~~~l~~a~~~~~~l~~~~~~~~---~~~~~~~-~~~~~~G~---------~hG~aGi~~~L~~l~~~ 154 (321)
T cd04791 89 GLALLYFART-GDPALLEAAAKIAELLAEALERGD---PALLWPD-FDRVDHGL---------LHGWAGIALFLLRLYKA 154 (321)
T ss_pred HHHHHHHHhc-CChHHHHHHHHHHHHHHHHhhccc---ccccccc-CCCCCCcc---------ccCcHHHHHHHHHHHHH
Confidence 3344444444 344566778899999987654321 1111100 00000011 23455555666555431
Q ss_pred CCcccCCCCCHHHHHHHHHHHHhhccccCCCcc
Q 006042 404 PPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLA 436 (663)
Q Consensus 404 ~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~ 436 (663)
.+++...+...++++++.+...++++||.
T Consensus 155 ----t~d~~~l~~A~~~~~~~~~~~~~~~~g~~ 183 (321)
T cd04791 155 ----TGDSRYLELAEEALDKELARAVVDDGGLL 183 (321)
T ss_pred ----HCCHHHHHHHHHHHHHHHHhhccCCCCce
Confidence 12333456677888888776654367773
No 83
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=68.32 E-value=89 Score=36.39 Aligned_cols=131 Identities=18% Similarity=0.108 Sum_probs=72.5
Q ss_pred HHHHHHHHHHcCCC---CchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHH
Q 006042 323 TALGLQALMACNIA---DEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQ 399 (663)
Q Consensus 323 Tal~~~AL~~ag~~---~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 399 (663)
.++++.||+.++.. +++-+..+++.+||.+....+. ....+++ |+- ....-..|=|+.+.+++.
T Consensus 413 Nglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~r----l~~~~~~---G~a------~~~g~leDYA~~i~gll~ 479 (667)
T COG1331 413 NGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVDR----LLRRYRG---GEA------AVAGLLEDYAFLILGLLA 479 (667)
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcccc----hheeeec---Ccc------cccccchhHHHHHHHHHH
Confidence 58899999988742 2355678899999999987531 1111221 211 111234677777778777
Q ss_pred hcCCCCcccCCCCCHHHHHHHHH----HHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHH
Q 006042 400 LSLMPPEIVGEKMEPERLYDAVN----FLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEA 475 (663)
Q Consensus 400 ~~~~~~~~~~~~~~~~~i~~a~~----wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~a 475 (663)
+-.. + .+.+.+++|.+ -+...+.+ .|||-....+. ...+.. + ....|.+.++..+.++.+
T Consensus 480 lye~-----t--~d~~yL~~A~~L~~~~i~~f~d~-~gGf~~t~~~~-~~l~ir--~-----~~~~D~a~~S~na~~~~~ 543 (667)
T COG1331 480 LYEA-----T--GDLAYLEKAIELADEAIADFWDD-EGGFYDTPSDS-EDLLIR--P-----KEPTDGATPSGNAVAAQA 543 (667)
T ss_pred HHHh-----h--CcHHHHHHHHHHHHHHHHHhcCC-CCCcccCCCcc-cccccC--C-----CCCCCCCCCCHHHHHHHH
Confidence 6431 1 13344444443 45556777 68873322221 111100 1 123455666667777777
Q ss_pred HHHhhhh
Q 006042 476 FMLFKKL 482 (663)
Q Consensus 476 L~~~~~~ 482 (663)
|..+...
T Consensus 544 L~~Ls~l 550 (667)
T COG1331 544 LLRLSLL 550 (667)
T ss_pred HHHHHhh
Confidence 7776654
No 84
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=65.19 E-value=20 Score=38.39 Aligned_cols=95 Identities=21% Similarity=0.323 Sum_probs=63.3
Q ss_pred ccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcc--cCCCcccCC-------CCcchhHHHHHHHHHHHc-
Q 006042 465 YVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQT--ADGSWYGNW-------GICFIYGTCFALGGLQVA- 534 (663)
Q Consensus 465 ~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~--~DGsw~g~w-------g~~~~Y~T~~aL~aL~~~- 534 (663)
.+..+++.|=+++.+... . .++..+..+++++||.+... .+|+|.-.. .....|..++++.||+.+
T Consensus 19 ~~~~q~R~~~~fa~a~~~-g---~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~~~ 94 (346)
T PF07221_consen 19 RLWVQARQLYTFARAYRL-G---RPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAEAR 94 (346)
T ss_dssp EHHHHHHHHHHHHHHHHT-T---SHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHHHH
T ss_pred eeeeeHHHHHHHHHHHhc-C---chhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHHHH
Confidence 455778888888766542 2 23466789999999999874 458886311 234689999999999874
Q ss_pred --CCCcCChHHHHHHHHHHHhhc-CCC-CCccCC
Q 006042 535 --GKTYNNCLAIRRAVDFLLNAQ-SDD-GGWGES 564 (663)
Q Consensus 535 --g~~~~~~~~i~ra~~~Ll~~Q-~~D-GgWg~~ 564 (663)
|.+ +..+.+++++++|.+.- +++ |++.+.
T Consensus 95 ~tg~~-~~~~~A~~~~~~l~~~~~d~~~g~~~~~ 127 (346)
T PF07221_consen 95 ATGDP-EALELAEQTLEFLERRFWDPEGGGYRES 127 (346)
T ss_dssp CTT-T-THHHHHHHHHHHHHHHTEETTTTEE--E
T ss_pred HhCCh-hHHHHHHHHHHHHHHHhcccccCcceec
Confidence 333 24567788899998875 454 555544
No 85
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=59.37 E-value=23 Score=45.68 Aligned_cols=66 Identities=20% Similarity=0.167 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHhc
Q 006042 540 NCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQAD--RDPTPIHRGVKLLINS 616 (663)
Q Consensus 540 ~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~--~~~~~v~r~i~~L~~~ 616 (663)
.+..++.++.-|.+.|+.||+|+... +.+.+++.-|+|+..+|..+.... ..++.+.++.+++++.
T Consensus 1197 ~~~~l~~a~~rL~~~Q~~~G~F~~W~-----------~~~~~d~~ltaYa~~Fl~~A~e~g~~vp~~~~~~~~~~~~~~ 1264 (1621)
T COG2373 1197 LRARLQDAIGRLLSLQGSNGAFGLWG-----------GNGSGDPWLTAYAVDFLLRAREQGYSVPSDALNQMLERLLEY 1264 (1621)
T ss_pred HHHHHHHHHHHHHhhhhcCCceeecC-----------CCCCcchhhhHHHHHHHhhhhhcCcCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999988542 125788999999999999885432 2345788887766653
No 86
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=56.40 E-value=89 Score=33.34 Aligned_cols=97 Identities=23% Similarity=0.226 Sum_probs=59.6
Q ss_pred CchHHHHHHHHHHH---cCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCC----CCCccchH
Q 006042 319 QTWDTALGLQALMA---CNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHG----WQVSDCTA 391 (663)
Q Consensus 319 ~vwdTal~~~AL~~---ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~----~pd~d~Ta 391 (663)
.+|-++-.+.+++. .| .++..+..+++++||.+.-... . .|||.++..+.+ -.+.-+.+
T Consensus 19 ~~~~q~R~~~~fa~a~~~g-~~~~l~~A~~~~~fl~~~~~D~-~------------~Gg~~~~~~~~~~~~~~~~~Y~~a 84 (346)
T PF07221_consen 19 RLWVQARQLYTFARAYRLG-RPEYLELAEHGFDFLRKHFRDP-E------------YGGWYRSLDDGGPLDPQKDLYDQA 84 (346)
T ss_dssp EHHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHHHHHHTTBTT-T------------TSSBSSEEETTEEEE--EEHHHHH
T ss_pred eeeeeHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHhcccC-C------------CCCEEEEeCCCCCCccccchHHHH
Confidence 56777777777764 35 3446778899999999876522 1 234433332222 12344578
Q ss_pred HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhh-ccccCCCc
Q 006042 392 EGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSL-QDEKTGGL 435 (663)
Q Consensus 392 ~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~-Qn~~DGgw 435 (663)
+++.|+..... .+++...+..++++++|.+. +++ ++|+
T Consensus 85 f~l~ala~~~~-----tg~~~~~~~A~~~~~~l~~~~~d~-~~g~ 123 (346)
T PF07221_consen 85 FALLALAEARA-----TGDPEALELAEQTLEFLERRFWDP-EGGG 123 (346)
T ss_dssp HHHHHHHHHHC-----TT-TTHHHHHHHHHHHHHHHTEET-TTTE
T ss_pred HHHHHHHHHHH-----hCChhHHHHHHHHHHHHHHHhccc-ccCc
Confidence 99999887432 23444567778899998886 455 5443
No 87
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=52.56 E-value=44 Score=43.25 Aligned_cols=98 Identities=20% Similarity=0.203 Sum_probs=62.4
Q ss_pred CccchHHHHHHHHHhcCCCCcc-cCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCccccccccccccc
Q 006042 386 VSDCTAEGLKCVLQLSLMPPEI-VGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHT 464 (663)
Q Consensus 386 d~d~Ta~al~aL~~~~~~~~~~-~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~ 464 (663)
+..-|+-.++.++.+.+..... ..+.-.++.++.++.=|+++|+. ||+|+.+..... +
T Consensus 1169 c~EQt~S~~~pll~~~~~~~~~~~~~~~~~~~l~~a~~rL~~~Q~~-~G~F~~W~~~~~--------------------~ 1227 (1621)
T COG2373 1169 CAEQTASRLLPLLYAQKATADPGAADNDLRARLQDAIGRLLSLQGS-NGAFGLWGGNGS--------------------G 1227 (1621)
T ss_pred chhhhhhhHHHHHhhhhhhccccccchhHHHHHHHHHHHHHhhhhc-CCceeecCCCCC--------------------c
Confidence 4455666666666665433211 12223467899999999999999 999998775321 3
Q ss_pred ccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHH-hccc
Q 006042 465 YVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIED-EQTA 508 (663)
Q Consensus 465 ~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~-~Q~~ 508 (663)
....|+++..+|....+..-.. -+..++++.+++.+ .|++
T Consensus 1228 d~~ltaYa~~Fl~~A~e~g~~v----p~~~~~~~~~~~~~~l~n~ 1268 (1621)
T COG2373 1228 DPWLTAYAVDFLLRAREQGYSV----PSDALNQMLERLLEYLQNP 1268 (1621)
T ss_pred chhhhHHHHHHHhhhhhcCcCC----CHHHHHHHHHHHHHHHhCc
Confidence 4567999999998874321111 14577787675544 4554
No 88
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.25 E-value=4.7e+02 Score=30.73 Aligned_cols=127 Identities=14% Similarity=0.158 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHhhcccCCCCCCcccc
Q 006042 290 GIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIA---DEVESVLGKGHDYLKKAQIRDNPVGDYKGN 366 (663)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~---~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~ 366 (663)
-..+.++.+.|.+..-....|.. +.|-+-+...+..|...... +....++.+.++=+...-+-|
T Consensus 182 ~~~l~~~~~~l~~~~D~~~GGfg----~~pKFP~~~~l~~Llr~~~~~~d~~~~~~~~~TL~~ma~GGIyD--------- 248 (667)
T COG1331 182 EEVLDRAAEALARSFDREYGGFG----SAPKFPPPHLLLFLLRYSLRTGDERALDMVLRTLDAMARGGIYD--------- 248 (667)
T ss_pred hHHHHHHHHHHHHhcchhhCCcC----CCCCCCChHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCCcc---------
Confidence 34678888888876432222322 23445556666666553321 122345555555555443333
Q ss_pred CCCCCCCcccCccCCCC-CCCc----cchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHh-hccccCCCcc
Q 006042 367 FRHFSKGAWTFSDQDHG-WQVS----DCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLS-LQDEKTGGLA 436 (663)
Q Consensus 367 ~~~~~~GgW~fs~~~~~-~pd~----d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~-~Qn~~DGgw~ 436 (663)
|.-.|-.-||+...+ .|.. =|-|..+.+...+-. ..+++.+...++..++||++ |..+ +|||.
T Consensus 249 --hlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~----~tgd~~y~~~a~~i~~~l~rel~sp-~ggFy 317 (667)
T COG1331 249 --HLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYR----ATGDDLYRRAAEGILDYLLRELYSP-EGGFY 317 (667)
T ss_pred --ccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHHHHHHhcCC-CCcee
Confidence 332233345544332 1432 356666666655432 12555778889999999988 6777 88884
No 89
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=47.60 E-value=59 Score=37.14 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCccc-----------CCCC--cchhHHHHHHHHHHHc
Q 006042 468 CTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYG-----------NWGI--CFIYGTCFALGGLQVA 534 (663)
Q Consensus 468 ~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g-----------~wg~--~~~Y~T~~aL~aL~~~ 534 (663)
.+++-|.+++....... +++..+.+++.|+.|.+.|.+||-... .|.. ...|+....+.||...
T Consensus 61 ~~g~wl~a~a~~~~~~~---D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~ 137 (520)
T PF07944_consen 61 DVGKWLEAAAYAYAYTG---DPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDY 137 (520)
T ss_pred cHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHH
Confidence 46678888776654322 356788999999999999999984431 2332 1256666666666533
Q ss_pred ----CCCcCChHHHHHHHHHH
Q 006042 535 ----GKTYNNCLAIRRAVDFL 551 (663)
Q Consensus 535 ----g~~~~~~~~i~ra~~~L 551 (663)
|.. ..-+.+.|..+|+
T Consensus 138 y~~tG~~-~~L~v~~k~ad~~ 157 (520)
T PF07944_consen 138 YEATGNE-RALDVATKLADWV 157 (520)
T ss_pred HHHHCcH-HHHHHHHHHHHHH
Confidence 433 2346677889999
No 90
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=43.21 E-value=1.3e+02 Score=32.75 Aligned_cols=109 Identities=23% Similarity=0.331 Sum_probs=0.0
Q ss_pred HHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccC-------cHHHHHHHHHHhhhhCCCcchHHHHHHH
Q 006042 423 FLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVE-------CTASAIEAFMLFKKLYPHHRKKEIENFI 495 (663)
Q Consensus 423 wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~-------~Ta~~L~aL~~~~~~~~~~~~~~~~~~i 495 (663)
|.-.+=+.++||| |.....|-...+ .+++-|-+++.++.. ..+.+ ..+.+
T Consensus 24 w~~~g~d~~~GGf--------------------fe~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~--g~~~~-~~~~v 80 (388)
T COG2942 24 WLNAGVDTEGGGF--------------------FEALDRDGQILDETDRRLRVQARQVYCFAVAGLL--GWRGP-WLDAV 80 (388)
T ss_pred hcccCcCCCCCCc--------------------eeeeccCCccccCCCceeeeehhHHHHHHHHHHh--cCCcc-HHHHH
Q ss_pred HHHHHHHHHh-cccCCCcc---cCCC-----CcchhHHHHHHHHHHHcCCCcCCh--HHHHHHHHHHHhh
Q 006042 496 VKAVHYIEDE-QTADGSWY---GNWG-----ICFIYGTCFALGGLQVAGKTYNNC--LAIRRAVDFLLNA 554 (663)
Q Consensus 496 ~rav~~L~~~-Q~~DGsw~---g~wg-----~~~~Y~T~~aL~aL~~~g~~~~~~--~~i~ra~~~Ll~~ 554 (663)
..+++|+.+. .+++|+|+ ..-| ....|+.++||.|++.+-...... +..+++.+.|.+.
T Consensus 81 ~hG~~y~~~~~R~~~gg~~~~~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~ 150 (388)
T COG2942 81 AHGIAYLARVGRDPEGGWYFALDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERR 150 (388)
T ss_pred HhHHHHHHhcCcCCCCCeEEEecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
No 91
>PF00723 Glyco_hydro_15: Glycosyl hydrolases family 15; InterPro: IPR011613 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 15 GH15 from CAZY comprises enzymes with several known activities; glucoamylase (3.2.1.3 from EC); alpha-glucosidase (3.2.1.20 from EC); glucodextranase (3.2.1.70 from EC). Glucoamylase (GA) catalyses the release of D-glucose from the non-reducing ends of starch and other oligo- or poly-saccharides. Studies of fungal GA have indicated 3 closely-clustered acidic residues that play a role in the catalytic mechanism []. This region is also conserved in a recently sequenced bacterial GA []. The 3D structure of the pseudo-tetrasaccharide acarbose complexed with glucoamylase II(471) from Aspergillus awamori var. X100 has been determined to 2.4A resolution []. The protein belongs to the mainly-alpha class, and contains 19 helices and 9 strands. This protein is found in higher organisms, and is represented by phosphorylase kinase subunits.; GO: 0004339 glucan 1,4-alpha-glucosidase activity, 0005976 polysaccharide metabolic process; PDB: 1GAI_A 1GAH_A 1LF6_B 1LF9_A 3EQA_A 1AYX_A 2F6D_A 2FBA_A 1DOG_A 1GLM_A ....
Probab=38.42 E-value=4.4e+02 Score=29.25 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=29.9
Q ss_pred CCccchHHHHHHHHHhcCCCCcccCCCCCHHH--HHHHHHHHHhhccccCCCccccc
Q 006042 385 QVSDCTAEGLKCVLQLSLMPPEIVGEKMEPER--LYDAVNFLLSLQDEKTGGLAVWE 439 (663)
Q Consensus 385 pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~--i~~a~~wLl~~Qn~~DGgw~~~~ 439 (663)
+-.|.||..+.++......... +. ....+. |+..++|+.+.-+. -+++-+|
T Consensus 123 ~Q~D~~gl~l~~l~~~~~~g~~-~~-~~~~~~~~I~~~~~yi~~~w~~--pd~dlWE 175 (448)
T PF00723_consen 123 PQNDGPGLRLLALWQYIDSGLQ-II-YTYWEVSFIKNDLDYIERNWRE--PDFDLWE 175 (448)
T ss_dssp -BTHHHHHHHHHHHHHHHTTHH-HH-HTHHHHHTHHHHHHHHHHHTTS--BEE-TTS
T ss_pred cCCCchHHHHHHHHHHHHcCCC-cc-cccchhHHHHHHHHHHHHHcCC--cCCcccc
Confidence 5679999999999886311100 00 123345 89999999886543 2444444
No 92
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=35.50 E-value=5.3e+02 Score=26.78 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHH
Q 006042 412 MEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEI 491 (663)
Q Consensus 412 ~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~ 491 (663)
...+.+.+++++|.+.... +..+..+..... .......-++-++.+|..+.+... ++++
T Consensus 102 ~~l~~a~~~~~~l~~~~~~-~~~~~~~~~~~~-----------------~~~G~~hG~aGi~~~L~~l~~~t~---d~~~ 160 (321)
T cd04791 102 ALLEAAAKIAELLAEALER-GDPALLWPDFDR-----------------VDHGLLHGWAGIALFLLRLYKATG---DSRY 160 (321)
T ss_pred HHHHHHHHHHHHHHHHhhc-cccccccccCCC-----------------CCCccccCcHHHHHHHHHHHHHHC---CHHH
Confidence 4556788889998876544 333322211000 011223344555566665544322 2346
Q ss_pred HHHHHHHHHHHHHhccc-CCCcc
Q 006042 492 ENFIVKAVHYIEDEQTA-DGSWY 513 (663)
Q Consensus 492 ~~~i~rav~~L~~~Q~~-DGsw~ 513 (663)
.+.+.++++++.+...+ +++|.
T Consensus 161 l~~A~~~~~~~~~~~~~~~~g~~ 183 (321)
T cd04791 161 LELAEEALDKELARAVVDDGGLL 183 (321)
T ss_pred HHHHHHHHHHHHHhhccCCCCce
Confidence 67788899998876543 45553
No 93
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=33.59 E-value=28 Score=37.40 Aligned_cols=23 Identities=39% Similarity=0.748 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhhcCCCCCccCC
Q 006042 542 LAIRRAVDFLLNAQSDDGGWGES 564 (663)
Q Consensus 542 ~~i~ra~~~Ll~~Q~~DGgWg~~ 564 (663)
.+.-.|.+||+..|++-|||..-
T Consensus 380 aaFyaAadWlV~NQd~kGGW~~p 402 (594)
T KOG3760|consen 380 AAFYAAADWLVKNQDDKGGWSVP 402 (594)
T ss_pred HHHHHHHHHHhhCCCCCCCCcch
Confidence 34457889999999999999754
No 94
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=32.28 E-value=6.4e+02 Score=26.76 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHHc----CCCcCChHHHHHHHHHHHhh--cCCCC---CccCCCcCCCCccccCCCCCCCc-HHHHHHH
Q 006042 520 FIYGTCFALGGLQVA----GKTYNNCLAIRRAVDFLLNA--QSDDG---GWGESYKSCPNKIYTPLEGKRST-VVHTALA 589 (663)
Q Consensus 520 ~~Y~T~~aL~aL~~~----g~~~~~~~~i~ra~~~Ll~~--Q~~DG---gWg~~~~s~~~~~y~~~~g~~s~-~~~Ta~A 589 (663)
..+|++-.+.+|..+ +........+++.++.++.. ...+. .|...+.. ....|.+ -++ ....+++
T Consensus 99 ~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~-~~~~~~G----~aHG~aGI~~~ 173 (343)
T cd04794 99 LLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRAPCPLMYEW-HGKEYLG----AAHGLAGILYI 173 (343)
T ss_pred hhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCCCCCccccc-cCceecc----hhhhHHHHHHH
Confidence 456665555555433 21111356777777776654 22222 34322210 1111211 222 2235566
Q ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCC
Q 006042 590 VLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQ 626 (663)
Q Consensus 590 LlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~ 626 (663)
|+.+..........+.++++++|+.+.+.++|.|+..
T Consensus 174 L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~ 210 (343)
T cd04794 174 LLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSS 210 (343)
T ss_pred HHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 6655543222222357899999999988888999753
No 95
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=31.93 E-value=2.5e+02 Score=29.93 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCcccCCC-------CcchhHHHHHHHHHHHcCCCc---CChHHHHHHHHHHH
Q 006042 489 KEIENFIVKAVHYIEDEQTADGSWYGNWG-------ICFIYGTCFALGGLQVAGKTY---NNCLAIRRAVDFLL 552 (663)
Q Consensus 489 ~~~~~~i~rav~~L~~~Q~~DGsw~g~wg-------~~~~Y~T~~aL~aL~~~g~~~---~~~~~i~ra~~~Ll 552 (663)
+++.+.++++++|+.+.+.++|.|..... ....+|+.-.+.+|..+.... ...+.++++.+.+.
T Consensus 184 ~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 257 (343)
T cd04794 184 PSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIW 257 (343)
T ss_pred ccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35678999999999999888898864322 123455544444444332211 13445555555443
No 96
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=29.52 E-value=39 Score=39.36 Aligned_cols=61 Identities=23% Similarity=0.307 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccc-cccccccccCCccchHHH
Q 006042 585 HTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGV-FMRNCMLHYAEYRNIFPL 649 (663)
Q Consensus 585 ~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~-f~~~~~~~y~~y~~~~pl 649 (663)
.++++++||..+|.. +...+..+||.+.|.++|.|.......+ ....-++.+..|.+.||+
T Consensus 289 D~~~~~~AL~~~G~~----~~a~~~f~~l~~~~~~~~~~~~~y~~~g~~~~~~w~~~~~~~~~~pv 350 (612)
T COG3387 289 DASYAALALLAIGYK----KEALRFFEFLPDVQTPNGKLYHKYSIDGSDLAESWLPVSGYYNSFPV 350 (612)
T ss_pred cHHHHHHHHHHcCCH----HHHHHHHHHHHHhhCCCCceeeEEecCCCccccccccccCCCCCCce
Confidence 567888889988864 3578899999999999887654433333 444446666667777765
No 97
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=25.14 E-value=1.3e+03 Score=27.93 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHH
Q 006042 412 MEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEI 491 (663)
Q Consensus 412 ~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~ 491 (663)
...+.+.+++++|.+.+.. +..|.. ..... ........++-++.+|..+.+... .+.+
T Consensus 607 ~~l~~a~~~~~~l~~~~~~-~~~~~~-~~~~~-----------------~~~G~aHG~sGi~~aL~~l~~~~~---d~~~ 664 (825)
T cd04792 607 RFLDLALKCGDHLLENASN-EDGGIG-PAEQP-----------------NLTGFAHGASGIAWALLRLYKVTG---DSRY 664 (825)
T ss_pred HHHHHHHHHHHHHHHhhhh-ccCCcc-ccccc-----------------ccccccccHHHHHHHHHHHHHHcC---cHHH
Confidence 3456678888888876555 433321 11000 001123334555566666554322 2356
Q ss_pred HHHHHHHHHHHHHhcccC-CCcccC----CCCcchhHHHHHHHHHHHcC
Q 006042 492 ENFIVKAVHYIEDEQTAD-GSWYGN----WGICFIYGTCFALGGLQVAG 535 (663)
Q Consensus 492 ~~~i~rav~~L~~~Q~~D-Gsw~g~----wg~~~~Y~T~~aL~aL~~~g 535 (663)
.+.+.+++++..+...++ +.|... ......+|++-.+.++..+.
T Consensus 665 ~~~a~~~l~~~~~~~~~~~~~w~~~~~~~~~~~WChG~~GI~lal~~~~ 713 (825)
T cd04792 665 LKLAHKALKYERRLFSEEGWNWPRKDGNSFSAAWCHGAPGILLARLELL 713 (825)
T ss_pred HHHHHHHHHHHHHhcCHhhcCCCCcCcCCCCCcccCCcHHHHHHHHHHH
Confidence 678888898887765433 445311 01123345544555555443
No 98
>PLN03009 cellulase
Probab=22.07 E-value=4.1e+02 Score=30.18 Aligned_cols=26 Identities=12% Similarity=0.060 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHhcccCCCcc
Q 006042 488 KKEIENFIVKAVHYIEDEQTADGSWY 513 (663)
Q Consensus 488 ~~~~~~~i~rav~~L~~~Q~~DGsw~ 513 (663)
.+.+.+.|+=+++||+++|..+|.++
T Consensus 112 ~~diLdeikw~~D~llkm~~~~~~~y 137 (495)
T PLN03009 112 LRNSLVAIRWATDYLLKTVSQPNRIF 137 (495)
T ss_pred cHHHHHHHHHHHHHHHHcccCcCeEE
Confidence 34567788999999999987777664
No 99
>PRK13622 psbV cytochrome c-550; Provisional
Probab=21.52 E-value=96 Score=30.06 Aligned_cols=36 Identities=22% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHHhccCCCCccccccC-CCCceeh
Q 006042 45 VFTVEHRREILRYLYNHQHEDGGWGVHVE-APSSMFG 80 (663)
Q Consensus 45 ~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~-~~~~~~~ 80 (663)
.++++.++.++.||+.+-...++||.-.+ +.+++++
T Consensus 142 ~LsdeEI~~VA~yIl~qa~~~~~Wg~~k~~~~~~~~~ 178 (180)
T PRK13622 142 NLTDEDLKLIAGYILVQAKTVPGWGGTKNESHSDLSA 178 (180)
T ss_pred CCCHHHHHHHHHHHHhCcccCCccCCCCCCCcchhhh
Confidence 47889999999999997776789997666 6666653
Done!