Query 006042
Match_columns 663
No_of_seqs 340 out of 2044
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 14:25:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w6k_A Lanosterol synthase; cy 100.0 1E-130 3E-135 1139.3 49.8 642 1-661 77-725 (732)
2 2sqc_A Squalene-hopene cyclase 100.0 3E-119 1E-123 1033.4 48.3 608 1-660 15-629 (631)
3 2sqc_A Squalene-hopene cyclase 100.0 8.4E-40 2.9E-44 375.0 15.6 511 2-596 62-624 (631)
4 1w6k_A Lanosterol synthase; cy 100.0 9.9E-37 3.4E-41 353.1 14.5 481 49-626 75-632 (732)
5 2h6f_B Protein farnesyltransfe 99.9 3E-27 1E-31 256.9 18.2 214 343-626 75-291 (437)
6 3dss_B Geranylgeranyl transfer 99.9 3.4E-25 1.2E-29 233.5 20.5 280 292-655 19-301 (331)
7 3dss_B Geranylgeranyl transfer 99.9 7.6E-25 2.6E-29 230.8 17.8 195 386-637 46-241 (331)
8 1n4q_B Geranyltransferase type 99.9 5.8E-25 2E-29 234.6 15.5 228 343-625 22-262 (377)
9 3q7a_B Farnesyltransferase bet 99.9 7.1E-23 2.4E-27 222.7 19.3 218 388-637 90-326 (520)
10 2wy7_A Complement C3D fragment 99.9 6.6E-22 2.3E-26 207.9 19.1 200 415-661 54-295 (310)
11 1qqf_A Protein (complement C3D 99.9 1.1E-21 3.8E-26 202.8 20.3 198 415-659 38-277 (277)
12 2h6f_B Protein farnesyltransfe 99.9 7.9E-22 2.7E-26 214.4 19.6 286 293-656 75-374 (437)
13 1hzf_A Complement factor C4A; 99.9 6.7E-22 2.3E-26 212.5 15.3 234 372-659 51-363 (367)
14 1r76_A Pectate lyase; A-helica 99.9 5.7E-22 1.9E-26 209.4 12.4 203 341-563 81-335 (408)
15 1gxm_A Pectate lyase; mechanis 99.8 3.1E-21 1.1E-25 198.2 7.1 185 347-557 37-252 (332)
16 1n4q_B Geranyltransferase type 99.8 3.5E-19 1.2E-23 190.1 21.4 295 292-655 21-332 (377)
17 3q7a_B Farnesyltransferase bet 99.7 6.1E-16 2.1E-20 168.4 19.4 223 293-565 63-318 (520)
18 1qqf_A Protein (complement C3D 99.7 1.4E-15 4.7E-20 157.1 19.5 218 322-596 11-273 (277)
19 1hzf_A Complement factor C4A; 99.7 2.3E-15 7.8E-20 161.6 19.3 238 303-596 46-359 (367)
20 4acq_A Alpha-2-macroglobulin; 99.7 1.7E-15 5.7E-20 187.6 20.5 272 322-660 959-1246(1451)
21 2hr0_B Complement C3 alpha' ch 99.7 1.7E-15 6E-20 180.7 19.9 200 415-661 299-540 (915)
22 2wy7_A Complement C3D fragment 99.7 1.9E-15 6.5E-20 158.5 17.7 219 321-596 26-289 (310)
23 2pn5_A TEP1R, thioester-contai 99.6 8.9E-16 3.1E-20 190.3 15.9 196 415-659 872-1105(1325)
24 1r76_A Pectate lyase; A-helica 99.6 1.3E-14 4.5E-19 153.3 16.4 207 416-625 82-335 (408)
25 3dra_B Geranylgeranyltransfera 99.6 7.5E-14 2.5E-18 148.6 20.2 316 293-657 6-362 (390)
26 3dra_B Geranylgeranyltransfera 99.5 1.8E-13 6.2E-18 145.6 16.1 191 387-618 32-252 (390)
27 4fxk_B Complement C4-A alpha c 99.5 1E-11 3.6E-16 145.7 28.2 274 318-659 337-640 (767)
28 2hr0_B Complement C3 alpha' ch 99.3 1.5E-11 5.2E-16 146.7 19.2 230 304-596 255-534 (915)
29 1gxm_A Pectate lyase; mechanis 99.3 7.5E-12 2.6E-16 128.8 10.1 185 419-618 35-251 (332)
30 2b39_A C3; thioester, immune d 99.2 2.5E-10 8.7E-15 144.1 23.5 271 303-660 1001-1286(1661)
31 3prx_B Cobra venom factor; imm 99.2 1.2E-12 4.1E-17 162.8 0.2 205 385-660 1057-1268(1642)
32 3cu7_A Complement C5; Mg domai 99.2 5.5E-10 1.9E-14 141.2 22.8 267 318-660 1013-1305(1676)
33 2pn5_A TEP1R, thioester-contai 99.1 8.2E-10 2.8E-14 137.0 20.3 216 318-596 844-1101(1325)
34 4acq_A Alpha-2-macroglobulin; 99.1 1.4E-09 4.6E-14 135.0 19.8 165 416-626 984-1163(1451)
35 2bb6_A TCII, TC II, transcobal 98.7 1.5E-07 5.2E-12 100.2 14.9 146 389-598 138-286 (414)
36 2bb6_A TCII, TC II, transcobal 98.6 1E-07 3.4E-12 101.6 11.7 148 317-534 133-284 (414)
37 2pmv_A Gastric intrinsic facto 98.6 1.8E-07 6.3E-12 99.0 13.1 129 415-599 130-263 (399)
38 4fxk_B Complement C4-A alpha c 98.5 5.2E-06 1.8E-10 97.3 22.7 233 292-596 369-636 (767)
39 2b39_A C3; thioester, immune d 98.5 3.7E-06 1.3E-10 106.3 20.3 225 293-596 1048-1281(1661)
40 3cu7_A Complement C5; Mg domai 98.4 7.9E-06 2.7E-10 103.5 20.2 227 293-596 1049-1300(1676)
41 2pmv_A Gastric intrinsic facto 98.2 3.4E-06 1.2E-10 89.3 9.8 120 468-624 116-245 (399)
42 3k11_A Putative glycosyl hydro 97.8 0.00076 2.6E-08 73.1 19.6 259 321-624 82-372 (445)
43 3prx_B Cobra venom factor; imm 97.5 1.2E-05 4.1E-10 100.5 0.0 124 491-616 1028-1162(1642)
44 3pmm_A Putative cytoplasmic pr 97.4 0.011 3.7E-07 63.1 21.2 223 409-659 127-381 (382)
45 3p5p_A Taxadiene synthase; cla 97.1 0.0017 5.7E-08 75.0 11.6 257 292-617 9-280 (764)
46 3sdr_A Alpha-bisabolene syntha 96.8 0.05 1.7E-06 63.2 20.2 63 496-559 273-336 (817)
47 3s9v_A Abietadiene synthase, c 96.8 0.03 1E-06 64.8 18.2 90 496-599 245-336 (785)
48 3pya_A ENT-copalyl diphosphate 96.7 0.034 1.2E-06 63.5 17.7 253 292-617 10-279 (727)
49 3sdr_A Alpha-bisabolene syntha 96.7 0.0015 5.3E-08 75.8 6.6 105 494-617 55-163 (817)
50 3s9v_A Abietadiene synthase, c 96.6 0.0021 7E-08 74.5 6.6 102 494-617 32-136 (785)
51 3p5p_A Taxadiene synthase; cla 96.4 0.0031 1.1E-07 72.8 6.7 104 494-617 9-115 (764)
52 3pya_A ENT-copalyl diphosphate 96.3 0.0086 3E-07 68.5 9.4 82 518-617 31-112 (727)
53 1nc5_A Hypothetical protein YT 96.3 0.13 4.5E-06 54.5 17.7 131 521-658 212-367 (373)
54 3pmm_A Putative cytoplasmic pr 95.9 0.17 5.7E-06 53.8 16.4 99 415-534 263-377 (382)
55 1nc5_A Hypothetical protein YT 95.6 0.71 2.4E-05 48.7 19.9 128 469-596 215-364 (373)
56 3k11_A Putative glycosyl hydro 95.6 0.37 1.3E-05 52.1 17.5 215 318-565 142-375 (445)
57 3gt5_A N-acetylglucosamine 2-e 94.1 1.5 5.2E-05 46.6 17.8 150 318-505 49-208 (402)
58 1lf6_A Glucoamylase; (alpha/al 94.1 1.1 3.6E-05 51.5 17.3 254 321-626 343-637 (684)
59 2gz6_A N-acetyl-D-glucosamine 93.9 2.4 8.3E-05 44.5 18.6 243 292-566 78-353 (388)
60 2gz6_A N-acetyl-D-glucosamine 93.4 0.35 1.2E-05 51.1 10.9 127 416-561 16-158 (388)
61 1ulv_A Glucodextranase; GH fam 93.3 1.2 4.2E-05 53.1 16.4 91 320-428 331-421 (1020)
62 2vn4_A Glucoamylase; hydrolase 91.0 7.5 0.00026 43.6 18.5 105 320-430 52-172 (599)
63 2fba_A Glucoamylase Glu1; (alp 91.0 4.6 0.00016 44.2 16.3 107 320-430 68-203 (492)
64 2ahf_A Unsaturated glucuronyl 89.5 3.6 0.00012 43.3 13.4 220 411-658 107-367 (377)
65 2zbl_A Putative isomerase; N-a 88.8 8.7 0.0003 40.9 16.2 153 318-506 48-208 (421)
66 3gt5_A N-acetylglucosamine 2-e 87.8 3.3 0.00011 43.9 12.0 130 415-562 13-157 (402)
67 2zzr_A Unsaturated glucuronyl 87.6 13 0.00044 39.3 16.2 218 412-658 134-392 (397)
68 1gai_A Glucoamylase-471; hydro 85.2 24 0.00081 38.2 17.0 102 320-430 53-171 (472)
69 1fp3_A N-acyl-D-glucosamine 2- 83.2 28 0.00097 36.3 16.6 101 318-435 53-166 (402)
70 1lf6_A Glucoamylase; (alpha/al 83.2 8.4 0.00029 43.9 13.0 94 523-626 344-440 (684)
71 1ulv_A Glucodextranase; GH fam 81.5 18 0.00061 43.2 15.4 127 491-626 282-432 (1020)
72 2ahf_A Unsaturated glucuronyl 80.8 17 0.00059 38.1 13.4 192 319-534 145-364 (377)
73 1fp3_A N-acyl-D-glucosamine 2- 77.2 12 0.00042 39.3 11.1 129 417-561 19-166 (402)
74 2fba_A Glucoamylase Glu1; (alp 76.4 19 0.00065 39.2 12.5 127 387-533 68-229 (492)
75 3h7l_A Endoglucanase; dehydrog 75.8 45 0.0015 37.0 15.3 166 469-660 164-380 (586)
76 3k7x_A LIN0763 protein; Q92DQ0 70.8 68 0.0023 33.0 14.6 191 319-559 44-253 (349)
77 2vn4_A Glucoamylase; hydrolase 70.4 8.7 0.0003 43.0 8.1 123 387-533 52-198 (599)
78 3h7l_A Endoglucanase; dehydrog 69.8 88 0.003 34.7 15.8 130 415-558 194-342 (586)
79 2zbl_A Putative isomerase; N-a 67.0 64 0.0022 34.0 13.8 129 416-565 16-158 (421)
80 2zzr_A Unsaturated glucuronyl 63.9 66 0.0022 33.9 12.9 189 322-534 174-389 (397)
81 3ren_A Glycosyl hydrolase, fam 57.3 45 0.0015 34.5 9.8 145 492-656 190-349 (350)
82 1wgn_A UBAP1, ubiquitin associ 54.9 14 0.0005 27.8 4.1 28 525-558 34-61 (63)
83 1gai_A Glucoamylase-471; hydro 50.9 27 0.00092 37.8 7.3 42 491-533 154-197 (472)
84 1ks8_A Endo-B-1,4-glucanase; c 49.5 2.3E+02 0.0077 30.0 14.3 89 415-506 94-192 (433)
85 2dna_A Unnamed protein product 41.1 27 0.00092 27.0 3.8 28 526-559 36-63 (67)
86 3rrs_A Cellobiose phosphorylas 41.0 4.7E+02 0.016 30.1 17.3 99 388-510 367-479 (822)
87 3qde_A Cellobiose phosphorylas 36.1 4E+02 0.014 30.6 14.6 86 413-510 373-472 (811)
88 1wgn_A UBAP1, ubiquitin associ 33.9 38 0.0013 25.6 3.5 27 588-620 35-61 (63)
89 3k7x_A LIN0763 protein; Q92DQ0 30.3 4.5E+02 0.015 26.7 15.6 162 320-513 91-256 (349)
90 3e6u_A LANC-like protein 1; al 30.2 1.1E+02 0.0036 32.3 7.8 63 469-534 233-301 (411)
91 2dna_A Unnamed protein product 28.8 56 0.0019 25.2 3.8 27 589-621 37-63 (67)
92 1vej_A Riken cDNA 4931431F19; 27.2 59 0.002 25.6 3.8 27 526-558 46-72 (74)
93 2cpw_A CBL-interacting protein 26.1 61 0.0021 24.6 3.6 28 525-557 34-61 (64)
94 1vg5_A RSGI RUH-014, rhomboid 26.1 65 0.0022 25.2 3.8 29 524-558 43-71 (73)
95 1wiv_A UBP14, ubiquitin-specif 24.4 81 0.0028 24.6 4.2 28 524-557 43-70 (73)
96 1wji_A Tudor domain containing 23.4 85 0.0029 23.7 4.0 28 525-558 24-51 (63)
97 2dah_A Ubiquilin-3; UBA domain 22.9 87 0.003 22.8 3.8 26 526-557 26-51 (54)
98 2knz_A Ubiquilin-4; cytoplasm, 21.8 72 0.0024 23.1 3.1 25 525-555 27-51 (53)
No 1
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=9.7e-131 Score=1139.30 Aligned_cols=642 Identities=40% Similarity=0.818 Sum_probs=590.9
Q ss_pred ChHHHHHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceeh
Q 006042 1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFG 80 (663)
Q Consensus 1 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~ 80 (663)
|+++++||+++|.+||||++|++||+|+++++||++|++|+ ++++++++++++||+++||+||||++|++++|+||+
T Consensus 77 ~~~~~~~~~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~yl~~~Q~~DGgWgl~~~~~s~~~~ 153 (732)
T 1w6k_A 77 ALNGMTFYVGLQAEDGHWTGDYGGPLFLLPGLLITCHVARI---PLPAGYREEIVRYLRSVQLPDGGWGLHIEDKSTVFG 153 (732)
T ss_dssp HHHHHHHHHTTBCTTSCBCCCCCCBSSHHHHHHHHHHHHTC---CCCTTHHHHHHHHHHHHSCTTSCBCSBTTSCCBHHH
T ss_pred HHHHHHHHHHhcCCCCCccccccCchhhhHHHHHHHHHhCC---CCCHHHHHHHHHHHHHhcCCCCCccCCcCCCccHHH
Confidence 47899999999999999999999999999999999999995 556678999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccc
Q 006042 81 TVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMW 160 (663)
Q Consensus 81 t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~ 160 (663)
||+||+|||++|+++++ |+|+|||+||++|||++++|+|||||||++|+|+|+++|+|||||||||.||||||++||
T Consensus 154 T~~~Y~aLrl~G~~~~~---~~~~~ar~~i~~~GG~~~~~~~~k~~La~~g~~~W~~~~~~PpE~~llP~~~p~~~~~~~ 230 (732)
T 1w6k_A 154 TALNYVSLRILGVGPDD---PDLVRARNILHKKGGAVAIPSWGKFWLAVLNVYSWEGLNTLFPEMWLFPDWAPAHPSTLW 230 (732)
T ss_dssp HHHHHHHHHHTTCCTTS---HHHHHHHHHHHHTTCGGGCCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSC
T ss_pred HHHHHHHHHHcCCCCCc---HHHHHHHHHHHHcCCcccCcHHHHHHHHHcCCCCcccCCCCCHHHHHccCcCCCCHHHHH
Confidence 99999999999998887 599999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccC
Q 006042 161 CYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240 (663)
Q Consensus 161 ~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~ 240 (663)
||+|+|++||+||+++||+++.+|++.+||+|||+.|+.+|+|...|+.|++.|.|+|++.+...++..+ +.+++++
T Consensus 231 ~~~R~~~~p~~~l~~~r~~~~~~~~~~~lr~el~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~l-~~~e~~~-- 307 (732)
T 1w6k_A 231 CHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHSWLLRVVYALL-NLYEHHH-- 307 (732)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCCHHHHHHHHHH-HHHHHTC--
T ss_pred HHHHHHHHhHHHHhhcCCCCCCCcchhhHHHHhcCCCccccchhhhccccccccccCCHHHHHHHHHHHH-HHhhhcC--
Confidence 9999999999999999999988899899999999999999999999999999999999998888877666 6667654
Q ss_pred CCCChHHHHHHHHHHHHHhhhhcCCCceeeecccchhhcccccccc-CCCcHHHHHHHHHHhhhheecCCCceeecC-CC
Q 006042 241 WPLNKLIRQKALKETMKFIHYEDHNSRYITIGCVEKPLCMLACWVE-DPNGIAFKKHLNRIADYIWLGEDGMKVQTF-GS 318 (663)
Q Consensus 241 ~~~~~l~r~~a~~~~~~~i~~~~~~~~~~~~~~v~~~l~~l~~~~~-~p~~~~~~~~~~~l~~~~~~~~~g~~~~~~-~s 318 (663)
++++ |++|+++++++|.+++++++|++++||++++||++++.+ +|++|.+++|+++|.+|+|+.+||+++|++ +|
T Consensus 308 --~~~l-r~~a~~~~~~~i~~~~~~~~~~~i~pv~~~l~~l~~~~~~G~~~~~~~~~l~~l~~~l~~~~dG~~~q~~~gs 384 (732)
T 1w6k_A 308 --SAHL-RQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTNGS 384 (732)
T ss_dssp --CHHH-HHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTSGGGEEEETTEEEECSSSCC
T ss_pred --cHHH-HHHHHHHHHHHHHhhccCCCCcccchhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhheeCCCCceeCCCCCC
Confidence 3567 999999999999999999999999999999999888753 599999999999999999999999999999 59
Q ss_pred CchHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHH
Q 006042 319 QTWDTALGLQALMACNIAD--EVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKC 396 (663)
Q Consensus 319 ~vwdTal~~~AL~~ag~~~--~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 396 (663)
+||||+++++||.++|+++ ++.+.++||++||.++|++++ .|+|...|++..+|||+|++.++++||+|+||++++|
T Consensus 385 ~vwdTalal~AL~~ag~~~~~~~~~~l~ka~~~L~~~Q~~~~-~~d~~~~~r~~~~GGW~f~~~~~~~pd~d~TA~vl~a 463 (732)
T 1w6k_A 385 QIWDTAFAIQALLEAGGHHRPEFSSCLQKAHEFLRLSQVPDN-PPDYQKYYRQMRKGGFSFSTLDCGWIVSDCTAEALKA 463 (732)
T ss_dssp HHHHHHHHHHHHHHTTGGGCGGGHHHHHHHHHHHHHHSCCCC-CTTGGGGTCCCCTTCCBSSCTTTCCBCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHHhccccc-CCcccccccCCCCCeecCCCCCCCCCccccHHHHHHH
Confidence 9999999999999999754 467899999999999998763 4788888999999999999998999999999999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHH
Q 006042 397 VLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAF 476 (663)
Q Consensus 397 L~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL 476 (663)
|..+.+.+.+ .++.++.++++++++||+++|++ ||||++|+.+++..|++.+||++.|++++++++++++|+++|.+|
T Consensus 464 L~~~~~~~~~-~g~~~~~~~i~~av~wLls~Q~~-DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL 541 (732)
T 1w6k_A 464 VLLLQEKCPH-VTEHIPRERLCDAVAVLLNMRNP-DGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQAL 541 (732)
T ss_dssp HHHHHHHCTT-CCSCCCHHHHHHHHHHHHTTCCT-TSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHH
T ss_pred HHHHhccccc-ccchhhHHHHHHHHHHHHHhcCC-CCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHH
Confidence 9987642211 13356789999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCCh---HHHHHHHHHHHh
Q 006042 477 MLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNC---LAIRRAVDFLLN 553 (663)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~---~~i~ra~~~Ll~ 553 (663)
..++...++++.+++++.|+||++||++.|++||+|++.||++++|+|++++.||..+|....+. +.++||++||++
T Consensus 542 ~~~~~~~~~~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~~Lls 621 (732)
T 1w6k_A 542 KYFHKRFPEHRAAEIRETLTQGLEFCRRQQRADGSWEGSWGVCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACDFLLS 621 (732)
T ss_dssp HHHHHHCTTSSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHHHHHT
T ss_pred HHhccccccccchhhHHHHHHHHHHHHhhcCCCCCccCcCCCccchHHHHHHHHHHHhCCcccccchhHHHHHHHHHHHH
Confidence 99987667776667788999999999999999999999999999999999999999999864223 799999999999
Q ss_pred hcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccccc
Q 006042 554 AQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFM 633 (663)
Q Consensus 554 ~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~ 633 (663)
+|++||||++++.+|.++.|.+ +..|++++|||||+||+.++.. +.+.++++++||+++|+++|+|++++++|+||
T Consensus 622 ~Q~~DGGWge~~~s~~~~~y~~--~~~s~v~~TAwALlALl~ag~~--~~~~i~r~v~wL~~~Q~~~Ggf~~~~~~g~f~ 697 (732)
T 1w6k_A 622 RQMADGGWGEDFESCEERRYVQ--SAQSQIHNTCWAMMGLMAVRHP--DIEAQERGVRCLLEKQLPNGDWPQENIAGVFN 697 (732)
T ss_dssp TCCTTSCCCBCTHHHHHTSCCB--CSSCCHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCCTTSCCCCCSCCEEET
T ss_pred hcccCCCCCCCCccccccccCC--CCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHhcCCCCCccCCccccccc
Confidence 9999999999887776667765 5679999999999999999875 34679999999999999999999999999999
Q ss_pred cccccccCCccchHHHHHHHHHHHhCCC
Q 006042 634 RNCMLHYAEYRNIFPLRALAEYRKRVPL 661 (663)
Q Consensus 634 ~~~~~~y~~y~~~~pl~AL~~y~~~~~~ 661 (663)
+.|||+|++|+++|||+||++|++++..
T Consensus 698 ~~~~i~Y~~y~~~fpl~AL~~y~~~~~~ 725 (732)
T 1w6k_A 698 KSCAISYTSYRNIFPIWALGRFSQLYPE 725 (732)
T ss_dssp TTEEECCTTHHHHHHHHHHHHHHHHCTT
T ss_pred chhhhcccchhHHHHHHHHHHHHHhcch
Confidence 9999999999999999999999998754
No 2
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=3e-119 Score=1033.41 Aligned_cols=608 Identities=23% Similarity=0.399 Sum_probs=537.7
Q ss_pred ChHHHHHHHHhcCCCCCccCCCCCCCcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCceeh
Q 006042 1 MKRAAHYFSAIQASDGHWPAENAGPMYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMFG 80 (663)
Q Consensus 1 ~~~~~~~l~~~Q~~dG~W~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~ 80 (663)
|+++++||+++|.+||||++|++||+|++|++||++|++|..+ +++++++++||+++||+||||++|++++|+||+
T Consensus 15 ~~~~~~~~~~~q~~dG~w~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~yl~~~Q~~dGgW~~~~~~~~~~~~ 90 (631)
T 2sqc_A 15 LDRAVEYLLSCQKDEGYWWGPLLSNVTMEAEYVLLCHILDRVD----RDRMEKIRRYLLHEQREDGTWALYPGGPPDLDT 90 (631)
T ss_dssp HHHHHHHHHHHCCTTSCCCCCEECCTHHHHHHHHHHHHTTCCC----HHHHHHHHHHHHHHSCTTSCCCSSTTCCCCHHH
T ss_pred HHHHHHHHHHhcCCCCcccccCCCcchhhHHHHHHHHHhCCCC----HHHHHHHHHHHHHhcCCCCCccCCCCCCcchHH
Confidence 4789999999999999999999999999999999999999755 478999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCCCchhHHHHHHHhCcccCCCCCCCCCceeecCCCCCCCCCccc
Q 006042 81 TVFSYLCMRLLGLGPNDGENNACARARKWIRDHGGVTYIPSWGKNWLSILGIFEWSGTNPMPPEFWILPSFVPLHPSKMW 160 (663)
Q Consensus 81 t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~GG~~~~~~~~k~~Lal~G~~~W~~~~~lP~el~llP~~~p~~~~~~~ 160 (663)
||+||+|||++|+++++ |+|+|||+||+++||++++|+|||||||++|+|+|+++|+||||+||||+||||||++||
T Consensus 91 t~~~y~aLrllg~~~~~---~~~~~ar~~i~~~GG~~~~~~~~k~~La~~G~~~w~~~~~~p~e~~llp~~~p~~~~~~~ 167 (631)
T 2sqc_A 91 TIEAYVALKYIGMSRDE---EPMQKALRFIQSQGGIESSRVFTRMWLALVGEYPWEKVPMVPPEIMFLGKRMPLNIYEFG 167 (631)
T ss_dssp HHHHHHHHHHHTCCTTS---HHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTSSCGGGSCCCCGGGGGSCTTSTTCGGGSC
T ss_pred HHHHHHHHHhcCCCCCh---HHHHHHHHHHHHcCCcccCCHHHHHHHHHcCCCCcccCCCCCHHHHHcccccccCHhHhH
Confidence 99999999999999987 499999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccC
Q 006042 161 CYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTR 240 (663)
Q Consensus 161 ~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~ 240 (663)
||+|+|++||+||+++||++++++.+ +| +|||+.|+..++|.. +.|.+.+...+...+ +.+++
T Consensus 168 ~~~R~~~~P~~~l~~~r~~~~~~~~~-~l-~el~~~~~~~~~~~~----------~~~~~~~~~~~~~~l-~~~~~---- 230 (631)
T 2sqc_A 168 SWARATVVALSIVMSRQPVFPLPERA-RV-PELYETDVPPRRRGA----------KGGGGWIFDALDRAL-HGYQK---- 230 (631)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCGGG-CC-GGGGCCSSCCCCCCC----------TTCCCHHHHHHHHHH-HHHHH----
T ss_pred HHHHHHHHhHHHHhhCCCccCCCCCC-CH-HHhcCCCccccCccc----------cccHHHHHHHHHHHH-HHhhc----
Confidence 99999999999999999999987775 77 999999999998753 234454444432322 33343
Q ss_pred CCCChHHHHHHHHHHHHHhhhhcCCCcee---eecccchhhccccccccCCCcHHHHHHHHHHhhhheecCC-CceeecC
Q 006042 241 WPLNKLIRQKALKETMKFIHYEDHNSRYI---TIGCVEKPLCMLACWVEDPNGIAFKKHLNRIADYIWLGED-GMKVQTF 316 (663)
Q Consensus 241 ~~~~~l~r~~a~~~~~~~i~~~~~~~~~~---~~~~v~~~l~~l~~~~~~p~~~~~~~~~~~l~~~~~~~~~-g~~~~~~ 316 (663)
+|++++ |++|+++++++|.+++++++++ ++++++++++++++ +.+ ++|.+++|++++.+|+|..+| |+++|++
T Consensus 231 ~~~~~l-r~~a~~~~~~~i~~~~~~~g~~~~i~p~~~~~~~~l~~~-g~~-~~~~~~~~~~~~~~~~~~~~dGg~~~~~~ 307 (631)
T 2sqc_A 231 LSVHPF-RRAAEIRALDWLLERQAGDGSWGGIQPPWFYALIALKIL-DMT-QHPAFIKGWEGLELYGVELDYGGWMFQAS 307 (631)
T ss_dssp SSCCTT-HHHHHHHHHHHHHHHCCTTSSSTTSHHHHHHHHHHHHHT-TCT-TSHHHHHHHHGGGGGEEECTTSCEEECSS
T ss_pred CCcHHH-HHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHhceEEcCCCceeeCCC
Confidence 345668 9999999999999999888763 34445665555444 223 899999999999999999898 8999999
Q ss_pred CCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHH
Q 006042 317 GSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKC 396 (663)
Q Consensus 317 ~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 396 (663)
+|+||||+++++||.++|.+++ ++.++||++||.+.|+.. .|+|...+++.++|||+||+.++++||+||||++++|
T Consensus 308 ~s~vwdta~~l~AL~~~G~~~~-~~~~~ka~~~L~~~q~~~--~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~A 384 (631)
T 2sqc_A 308 ISPVWDTGLAVLALRAAGLPAD-HDRLVKAGEWLLDRQITV--PGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWA 384 (631)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHTCCCS--CCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhcCCC--CCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHH
Confidence 9999999999999999998765 789999999999999854 4899988999999999999999999999999999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCccccccc--ccccccccCcHHHHHH
Q 006042 397 VLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLED--LIVEHTYVECTASAIE 474 (663)
Q Consensus 397 L~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~--~~~d~~~~~~Ta~~L~ 474 (663)
|..++. +. ++.+.+.++++++||+++|++ ||||+.|+.+++..+++.++ |++ .++|++++++|+.+|.
T Consensus 385 L~~~~~-~~----~~~~~~~l~~a~~wLls~Q~~-dGgf~~~~~~~~~~~~~~~~----F~~~~~~~d~~~vd~Ta~vl~ 454 (631)
T 2sqc_A 385 LNTLRL-PD----ERRRRDAMTKGFRWIVGMQSS-NGGWGAYDVDNTSDLPNHIP----FSDFGEVTDPPSEDVTAHVLE 454 (631)
T ss_dssp HTTCCC-SC----HHHHHHHHHHHHHHHHHTCCT-TSCBCSSCSSCCCSGGGGST----TCSSSCSSCCCBHHHHHHHHH
T ss_pred HHHcCC-Cc----cchhHHHHHHHHHHHHhhcCC-CCCCCccCCCCccccccccc----cccCCcccCCCCchHHHHHHH
Confidence 987653 11 113467899999999999999 99999999888877877775 443 4678899999999999
Q ss_pred HHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhh
Q 006042 475 AFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNA 554 (663)
Q Consensus 475 aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~ 554 (663)
+|..++. +. ..+.++|+++||++.|++||||++.|+.+++|+|+.++.+|..+|... .++.++||++||+++
T Consensus 455 aL~~~g~--~~-----~~~~i~rai~~L~~~Q~~DGsw~g~wg~~~~y~Ta~~l~aL~~~g~~~-~~~~i~rav~~L~s~ 526 (631)
T 2sqc_A 455 CFGSFGY--DD-----AWKVIRRAVEYLKREQKPDGSWFGRWGVNYLYGTGAVVSALKAVGIDT-REPYIQKALDWVEQH 526 (631)
T ss_dssp HHHTTTC--CT-----TSHHHHHHHHHHHHHCCTTSCCCCSSBSSHHHHHHHHHHHHHHTTCCT-TSHHHHHHHHHHHHT
T ss_pred HHHhcCC--Cc-----cHHHHHHHHHHHHHhcCCCCCCCCCCCCCchHHHHHHHHHHHHhCCcc-cHHHHHHHHHHHHHh
Confidence 9998763 22 246899999999999999999999999999999999999999998764 678999999999999
Q ss_pred cCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCccccc-cc
Q 006042 555 QSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGV-FM 633 (663)
Q Consensus 555 Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~-f~ 633 (663)
|++||||++.+.+|.++.|.+ ++.+++++|+|||++|..++..+ .+.++|+++||+++|++||+|++++.+|+ ||
T Consensus 527 Q~~DGgWg~~~~sy~~~~~~~--~~~s~v~~Ta~ALlaL~~ag~~~--~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~ 602 (631)
T 2sqc_A 527 QNPDGGWGEDCRSYEDPAYAG--KGASTPSQTAWALMALIAGGRAE--SEAARRGVQYLVETQRPDGGWDEPYYTGTGFP 602 (631)
T ss_dssp CCTTSCCCCCGGGGTCGGGTT--CSSCCHHHHHHHHHHHHHTTCSS--SHHHHHHHHHHHHHCCTTSCCCCCSCCEEEET
T ss_pred CcCCCCcCCccccccccccCC--CCCCCHHHHHHHHHHHHHcCCCC--hHHHHHHHHHHHhccCCCCCcCCCCccccccc
Confidence 999999999988887777754 56899999999999999998863 35799999999999999999999999999 99
Q ss_pred cccccccCCccchHHHHHHHHHHHhCC
Q 006042 634 RNCMLHYAEYRNIFPLRALAEYRKRVP 660 (663)
Q Consensus 634 ~~~~~~y~~y~~~~pl~AL~~y~~~~~ 660 (663)
++|||+|++|+++|||+||++|++++.
T Consensus 603 ~~~yl~y~~y~~~f~l~AL~~y~~~~~ 629 (631)
T 2sqc_A 603 GDFYLGYTMYRHVFPTLALGRYKQAIE 629 (631)
T ss_dssp TTEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred ccceeeccchhhHHHHHHHHHHHHHhh
Confidence 999999999999999999999998764
No 3
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=100.00 E-value=8.4e-40 Score=374.99 Aligned_cols=511 Identities=19% Similarity=0.193 Sum_probs=313.5
Q ss_pred hHHHHHHHHhcCCCCCccCCCCCC--CcCCHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhccCCCCccccccCCCCcee
Q 006042 2 KRAAHYFSAIQASDGHWPAENAGP--MYFLPPFVFCLYITGHLNTVFTVEHRREILRYLYNHQHEDGGWGVHVEAPSSMF 79 (663)
Q Consensus 2 ~~~~~~l~~~Q~~dG~W~~~~~~~--~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~ 79 (663)
++.++||+++|++||.|....+|+ ++.|+..+++|+++|.. .+++.++++++||++ +||+. ...++
T Consensus 62 ~~~~~yl~~~Q~~dGgW~~~~~~~~~~~~t~~~y~aLrllg~~---~~~~~~~~ar~~i~~----~GG~~-----~~~~~ 129 (631)
T 2sqc_A 62 EKIRRYLLHEQREDGTWALYPGGPPDLDTTIEAYVALKYIGMS---RDEEPMQKALRFIQS----QGGIE-----SSRVF 129 (631)
T ss_dssp HHHHHHHHHHSCTTSCCCSSTTCCCCHHHHHHHHHHHHHHTCC---TTSHHHHHHHHHHHH----TTCGG-----GSCHH
T ss_pred HHHHHHHHHhcCCCCCccCCCCCCcchHHHHHHHHHHHhcCCC---CChHHHHHHHHHHHH----cCCcc-----cCCHH
Confidence 578999999999999999777765 88899999999999973 346789999999999 59975 44456
Q ss_pred hhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcC---CCCCCchhHHH-HHHHhCcccCCCCCCCCC-----ceeecC-
Q 006042 80 GTVFSYLCMRLLGLGPNDGENNACARARKWIRDHG---GVTYIPSWGKN-WLSILGIFEWSGTNPMPP-----EFWILP- 149 (663)
Q Consensus 80 ~t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~G---G~~~~~~~~k~-~Lal~G~~~W~~~~~lP~-----el~llP- 149 (663)
+. +.|.++|+.+++.. .+..++-||+... .+.+.-+|+|. ++-|.=++.=.-+.++|+ ||..-|
T Consensus 130 ~k----~~La~~G~~~w~~~--~~~p~e~~llp~~~p~~~~~~~~~~R~~~~P~~~l~~~r~~~~~~~~~~l~el~~~~~ 203 (631)
T 2sqc_A 130 TR----MWLALVGEYPWEKV--PMVPPEIMFLGKRMPLNIYEFGSWARATVVALSIVMSRQPVFPLPERARVPELYETDV 203 (631)
T ss_dssp HH----HHHHHTTSSCGGGS--CCCCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHHCCCCCCCGGGCCGGGGCCSS
T ss_pred HH----HHHHHcCCCCcccC--CCCCHHHHHcccccccCHhHhHHHHHHHHHhHHHHhhCCCccCCCCCCCHHHhcCCCc
Confidence 66 57999999999853 4666777776653 23344455562 222211111122233332 333222
Q ss_pred CCCCCCCCccccccccchhhHHHhhcCCCCccCCchhHhhHhhhccCCCcccchhhhccccCCCCC-CCCchhHHHHHHH
Q 006042 150 SFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLIQQLREELHTQPYNEINWRKVRHLCSKEDL-YYPHPFVQELLWD 228 (663)
Q Consensus 150 ~~~p~~~~~~~~~~r~~~~pl~~l~~~r~~~~~~p~~~~l~~EL~~~~~~~~~~~~~r~~~~~~d~-~~p~~~~~~~~~~ 228 (663)
..+...++..|...-...-+++-++.+ + +..+ ||+.-. ...++|...|++..+.-. +.|. .++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--~~~~----lr~~a~---~~~~~~i~~~~~~~g~~~~i~p~-----~~~~ 268 (631)
T 2sqc_A 204 PPRRRGAKGGGGWIFDALDRALHGYQK-L--SVHP----FRRAAE---IRALDWLLERQAGDGSWGGIQPP-----WFYA 268 (631)
T ss_dssp CCCCCCCTTCCCHHHHHHHHHHHHHHH-S--SCCT----THHHHH---HHHHHHHHHHCCTTSSSTTSHHH-----HHHH
T ss_pred cccCccccccHHHHHHHHHHHHHHhhc-C--CcHH----HHHHHH---HHHHHHHHHHHcCCCCcccccHH-----HHHH
Confidence 111111111111000000011100000 0 1111 222111 122467777765321111 1221 1111
Q ss_pred HHHHhhhccccCCCCChHHHHHHHHHHHHHhhhhcCCCce---eeecccchh---hccccccccCCCcHHHHHHHHHHhh
Q 006042 229 TLYLASEPLLTRWPLNKLIRQKALKETMKFIHYEDHNSRY---ITIGCVEKP---LCMLACWVEDPNGIAFKKHLNRIAD 302 (663)
Q Consensus 229 ~~~~~~~~~~~~~~~~~l~r~~a~~~~~~~i~~~~~~~~~---~~~~~v~~~---l~~l~~~~~~p~~~~~~~~~~~l~~ 302 (663)
.+.... ...+-++. .+++++...+.+.. .+.++. .+.+||+.. +.+|...+..+++|.++|++++|++
T Consensus 269 ~~~l~~----~g~~~~~~-~~~~~~~~~~~~~~-~~dGg~~~~~~~s~vwdta~~l~AL~~~G~~~~~~~~~ka~~~L~~ 342 (631)
T 2sqc_A 269 LIALKI----LDMTQHPA-FIKGWEGLELYGVE-LDYGGWMFQASISPVWDTGLAVLALRAAGLPADHDRLVKAGEWLLD 342 (631)
T ss_dssp HHHHHH----TTCTTSHH-HHHHHHGGGGGEEE-CTTSCEEECSSCCHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHH
T ss_pred HHHHHH----cCCCCCHH-HHHHHHHHHhceEE-cCCCceeeCCCCChHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 111111 11121223 55555554444322 223132 223455543 3334444555678999999999999
Q ss_pred hheecCCC-ceeecC--------------CCCchHHHHHHHHHHHcCCCC--chHHHHHHHHHHHHhhcccCCCCCCccc
Q 006042 303 YIWLGEDG-MKVQTF--------------GSQTWDTALGLQALMACNIAD--EVESVLGKGHDYLKKAQIRDNPVGDYKG 365 (663)
Q Consensus 303 ~~~~~~~g-~~~~~~--------------~s~vwdTal~~~AL~~ag~~~--~~~~~l~ka~~wL~~~Q~~~~~~G~~~~ 365 (663)
.....+++ ...+++ .+++|||++++.||.+++..+ ...+.++++++||++.|..++..|.|..
T Consensus 343 ~q~~~~g~~~~~~~~~s~GgW~f~~~~~~~p~v~dTA~al~AL~~~~~~~~~~~~~~l~~a~~wLls~Q~~dGgf~~~~~ 422 (631)
T 2sqc_A 343 RQITVPGDWAVKRPNLKPGGFAFQFDNVYYPDVCDTAVVVWALNTLRLPDERRRRDAMTKGFRWIVGMQSSNGGWGAYDV 422 (631)
T ss_dssp TCCCSCCGGGGTCTTSCCCCBCSSSSCTTCCBHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHTCCTTSCBCSSCS
T ss_pred hcCCCCCChhhhcCCCCCCCCccccCCCCCCchHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHhhcCCCCCCCccCC
Confidence 86532221 111111 256999999999999998753 2357899999999999998733333322
Q ss_pred cCCCCCCCcccCccCCCC--CCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCc
Q 006042 366 NFRHFSKGAWTFSDQDHG--WQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGA 443 (663)
Q Consensus 366 ~~~~~~~GgW~fs~~~~~--~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~ 443 (663)
.......++++|++.+.. .|++|+|+.++++|..++. +...+.++++++||+++|++ ||||..
T Consensus 423 ~~~~~~~~~~~F~~~~~~~d~~~vd~Ta~vl~aL~~~g~--------~~~~~~i~rai~~L~~~Q~~-DGsw~g------ 487 (631)
T 2sqc_A 423 DNTSDLPNHIPFSDFGEVTDPPSEDVTAHVLECFGSFGY--------DDAWKVIRRAVEYLKREQKP-DGSWFG------ 487 (631)
T ss_dssp SCCCSGGGGSTTCSSSCSSCCCBHHHHHHHHHHHHTTTC--------CTTSHHHHHHHHHHHHHCCT-TSCCCC------
T ss_pred CCccccccccccccCCcccCCCCchHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHhcCC-CCCCCC------
Confidence 222223467888764333 3899999999999987642 23457899999999999999 999931
Q ss_pred hhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCccc---------
Q 006042 444 SLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYG--------- 514 (663)
Q Consensus 444 ~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g--------- 514 (663)
.+. ..++++|+.++.+|..++.. . ..+.++|+++||++.|++||+|..
T Consensus 488 --------------~wg--~~~~y~Ta~~l~aL~~~g~~-~------~~~~i~rav~~L~s~Q~~DGgWg~~~~sy~~~~ 544 (631)
T 2sqc_A 488 --------------RWG--VNYLYGTGAVVSALKAVGID-T------REPYIQKALDWVEQHQNPDGGWGEDCRSYEDPA 544 (631)
T ss_dssp --------------SSB--SSHHHHHHHHHHHHHHTTCC-T------TSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGG
T ss_pred --------------CCC--CCchHHHHHHHHHHHHhCCc-c------cHHHHHHHHHHHHHhCcCCCCcCCccccccccc
Confidence 111 12467899999999987642 1 236899999999999999999953
Q ss_pred --CCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCC--CCc-cccCCCCCCCcHHHHHHH
Q 006042 515 --NWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSC--PNK-IYTPLEGKRSTVVHTALA 589 (663)
Q Consensus 515 --~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~--~~~-~y~~~~g~~s~~~~Ta~A 589 (663)
.++.++++.|++||.||..+|.. ..+.++|+++||+++|++||||++..... +.+ -|. .-+...+.++
T Consensus 545 ~~~~~~s~v~~Ta~ALlaL~~ag~~--~~~~i~rav~wL~~~Q~~dGgw~~~~~tg~gf~~~~yl-----~y~~y~~~f~ 617 (631)
T 2sqc_A 545 YAGKGASTPSQTAWALMALIAGGRA--ESEAARRGVQYLVETQRPDGGWDEPYYTGTGFPGDFYL-----GYTMYRHVFP 617 (631)
T ss_dssp GTTCSSCCHHHHHHHHHHHHHTTCS--SSHHHHHHHHHHHHHCCTTSCCCCCSCCEEEETTTEEE-----EETTHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHhccCCCCCcCCCCccccccccccee-----eccchhhHHH
Confidence 23456778899999999999986 46889999999999999999999875321 010 011 1134678999
Q ss_pred HHHHHHc
Q 006042 590 VLSLISA 596 (663)
Q Consensus 590 LlaL~~a 596 (663)
|.||...
T Consensus 618 l~AL~~y 624 (631)
T 2sqc_A 618 TLALGRY 624 (631)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999754
No 4
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=100.00 E-value=9.9e-37 Score=353.14 Aligned_cols=481 Identities=18% Similarity=0.214 Sum_probs=313.3
Q ss_pred HHHHHHHHHHHhccCCCCccccccCCCCceehhHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhc----CCC-----CCC
Q 006042 49 EHRREILRYLYNHQHEDGGWGVHVEAPSSMFGTVFSYLCMRLLGLGPNDGENNACARARKWIRDH----GGV-----TYI 119 (663)
Q Consensus 49 ~~~~~~~~~l~~~Q~~dGgW~~~~~~~~~~~~t~~~y~aL~l~G~~~~~~~~~~~~~ar~~i~~~----GG~-----~~~ 119 (663)
+.+++++++|.+.|.+||.|....+++ +|.+.+..++|+++|...+++ ..++..+||+++ ||+ ..+
T Consensus 75 ~a~~~~~~~~~~~Q~~dG~W~~~~~~~--~~~~~~~v~~~~~~~~~~~~~---~~~~~~~yl~~~Q~~DGgWgl~~~~~s 149 (732)
T 1w6k_A 75 EGALNGMTFYVGLQAEDGHWTGDYGGP--LFLLPGLLITCHVARIPLPAG---YREEIVRYLRSVQLPDGGWGLHIEDKS 149 (732)
T ss_dssp HHHHHHHHHHHTTBCTTSCBCCCCCCB--SSHHHHHHHHHHHHTCCCCTT---HHHHHHHHHHHHSCTTSCBCSBTTSCC
T ss_pred HHHHHHHHHHHHhcCCCCCccccccCc--hhhhHHHHHHHHHhCCCCCHH---HHHHHHHHHHHhcCCCCCccCCcCCCc
Confidence 457899999999999999999555554 599999999999999765543 899999999984 888 345
Q ss_pred chhHH----HHHHHhCcccCCCCCCCC--C-------ceeecCCCCCCCCCccccccccchhhHHHhhcCCCCccCCchh
Q 006042 120 PSWGK----NWLSILGIFEWSGTNPMP--P-------EFWILPSFVPLHPSKMWCYCRLVYMPVSYLYGKRFVGPITPLI 186 (663)
Q Consensus 120 ~~~~k----~~Lal~G~~~W~~~~~lP--~-------el~llP~~~p~~~~~~~~~~r~~~~pl~~l~~~r~~~~~~p~~ 186 (663)
.+++. +.|.++|..+-+ |.|- - -+.-.|.| .|+| |+++....|.+ ++|++
T Consensus 150 ~~~~T~~~Y~aLrl~G~~~~~--~~~~~ar~~i~~~GG~~~~~~~-----~k~~---------La~~g~~~W~~-~~~~P 212 (732)
T 1w6k_A 150 TVFGTALNYVSLRILGVGPDD--PDLVRARNILHKKGGAVAIPSW-----GKFW---------LAVLNVYSWEG-LNTLF 212 (732)
T ss_dssp BHHHHHHHHHHHHHTTCCTTS--HHHHHHHHHHHHTTCGGGCCHH-----HHHH---------HHHTTSSCGGG-SCCCC
T ss_pred cHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHcCCcccCcHH-----HHHH---------HHHcCCCCccc-CCCCC
Confidence 67766 688999984432 2111 0 01123444 5666 88889999985 78887
Q ss_pred HhhHhhhccCCCcccchhhhccccCCCCCCCCchhHHHHHHHHHHHhhhccccCCCCChHH---HHHHHHHHHHHhh---
Q 006042 187 QQLREELHTQPYNEINWRKVRHLCSKEDLYYPHPFVQELLWDTLYLASEPLLTRWPLNKLI---RQKALKETMKFIH--- 260 (663)
Q Consensus 187 ~~l~~EL~~~~~~~~~~~~~r~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---r~~a~~~~~~~i~--- 260 (663)
.||+..|.. +++++.|.+|..+.+|-|++++++.. . ..|+.+++ |++......+.|.
T Consensus 213 ----pE~~llP~~-~p~~~~~~~~~~R~~~~p~~~l~~~r----------~--~~~~~~~~~~lr~el~~~~~~~~~~~~ 275 (732)
T 1w6k_A 213 ----PEMWLFPDW-APAHPSTLWCHCRQVYLPMSYCYAVR----------L--SAAEDPLVQSLRQELYVEDFASIDWLA 275 (732)
T ss_dssp ----GGGGGSCTT-STTCGGGSCHHHHHHHHHHHHHHHTT----------C--CCCCCHHHHHHHTTSCSSCGGGCCSGG
T ss_pred ----HHHHHccCc-CCCCHHHHHHHHHHHHHhHHHHhhcC----------C--CCCCCcchhhHHHHhcCCCccccchhh
Confidence 788988866 67888888766555554444322111 1 11111120 2211111112222
Q ss_pred hhcC---CCceeeecccchhhccccccccC-CCcHHHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCC
Q 006042 261 YEDH---NSRYITIGCVEKPLCMLACWVED-PNGIAFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIA 336 (663)
Q Consensus 261 ~~~~---~~~~~~~~~v~~~l~~l~~~~~~-p~~~~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~ 336 (663)
.++. .+.|...+.+...+..+....+. +-.+..++++++..+++....++.. ..+..+|-....++.++.+.| +
T Consensus 276 ~r~~~~~~d~~~p~~~~~~~~~~~l~~~e~~~~~~lr~~a~~~~~~~i~~~~~~~~-~~~i~pv~~~l~~l~~~~~~G-~ 353 (732)
T 1w6k_A 276 QRNNVAPDELYTPHSWLLRVVYALLNLYEHHHSAHLRQRAVQKLYEHIVADDRFTK-SISIGPISKTINMLVRWYVDG-P 353 (732)
T ss_dssp GTTCCCGGGCSSCCCHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT-TCCSSHHHHHHHHHHHHHHHC-T
T ss_pred hccccccccccCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHhhccCCC-CcccchhHHHHHHHHHHHhcC-C
Confidence 1111 11222333333333322211111 2246778888888877643321111 134455655666777777778 3
Q ss_pred CchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHH
Q 006042 337 DEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPER 416 (663)
Q Consensus 337 ~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~ 416 (663)
+ ++.++++++.|.+--... ..|.+ ..+. ++ +.++||+++++||.+++. + .++...+.
T Consensus 354 ~--~~~~~~~l~~l~~~l~~~-~dG~~------------~q~~--~g-s~vwdTalal~AL~~ag~-~----~~~~~~~~ 410 (732)
T 1w6k_A 354 A--STAFQEHVSRIPDYLWMG-LDGMK------------MQGT--NG-SQIWDTAFAIQALLEAGG-H----HRPEFSSC 410 (732)
T ss_dssp T--SHHHHHHHHTSGGGEEEE-TTEEE------------ECSS--SC-CHHHHHHHHHHHHHHTTG-G----GCGGGHHH
T ss_pred C--CHHHHHHHHHHHHhheeC-CCCce------------eCCC--CC-CchHHHHHHHHHHHHcCC-C----cchhhHHH
Confidence 2 467788777776642211 11321 1111 11 357899999999998752 1 11234678
Q ss_pred HHHHHHHHHhhccccC--------------CCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhh
Q 006042 417 LYDAVNFLLSLQDEKT--------------GGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKL 482 (663)
Q Consensus 417 i~~a~~wLl~~Qn~~D--------------Ggw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~ 482 (663)
+++|++||+++|+. + |||+.... ...++.+++|+.+|++|..+.+.
T Consensus 411 l~ka~~~L~~~Q~~-~~~~d~~~~~r~~~~GGW~f~~~-------------------~~~~pd~d~TA~vl~aL~~~~~~ 470 (732)
T 1w6k_A 411 LQKAHEFLRLSQVP-DNPPDYQKYYRQMRKGGFSFSTL-------------------DCGWIVSDCTAEALKAVLLLQEK 470 (732)
T ss_dssp HHHHHHHHHHHSCC-CCCTTGGGGTCCCCTTCCBSSCT-------------------TTCCBCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-ccCCcccccccCCCCCeecCCCC-------------------CCCCCccccHHHHHHHHHHHhcc
Confidence 99999999999987 5 66643221 11346889999999999998764
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhcccCCCcc--------------------cCCCCc--chhHHHHHHHHHHHcCCCc--
Q 006042 483 YPHHRKKEIENFIVKAVHYIEDEQTADGSWY--------------------GNWGIC--FIYGTCFALGGLQVAGKTY-- 538 (663)
Q Consensus 483 ~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~--------------------g~wg~~--~~Y~T~~aL~aL~~~g~~~-- 538 (663)
.++.+.....++++++++||++.|++||+|. +.++++ ++++|+.+|.+|..++...
T Consensus 471 ~~~~g~~~~~~~i~~av~wLls~Q~~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d~s~v~~Ta~vL~aL~~~~~~~~~ 550 (732)
T 1w6k_A 471 CPHVTEHIPRERLCDAVAVLLNMRNPDGGFATYETKRGGHLLELLNPSEVFGDIMIDYTYVECTSAVMQALKYFHKRFPE 550 (732)
T ss_dssp CTTCCSCCCHHHHHHHHHHHHTTCCTTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSCCCBHHHHHHHHHHHHHHHHHCTT
T ss_pred cccccchhhHHHHHHHHHHHHHhcCCCCCEEeecCCCchHHHhhCcchhcccccccCCCcchHHHHHHHHHHHhcccccc
Confidence 2211112245689999999999999999993 334444 5669999999999876321
Q ss_pred ----CChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCc---HHHHHHHH
Q 006042 539 ----NNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDP---TPIHRGVK 611 (663)
Q Consensus 539 ----~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~---~~v~r~i~ 611 (663)
..++.++||++||+++|++||||++.+. ......|++++.||..+|....+. +.++|+++
T Consensus 551 ~~~~~~~~~i~rAv~yL~~~Q~~DGsW~g~wg-------------~~~~Y~T~~al~AL~~aG~~~~~~~~~~~i~rav~ 617 (732)
T 1w6k_A 551 HRAAEIRETLTQGLEFCRRQQRADGSWEGSWG-------------VCFTYGTWFGLEAFACMGQTYRDGTACAEVSRACD 617 (732)
T ss_dssp SSHHHHHHHHHHHHHHHHHHSCTTSCCCCSSB-------------SSHHHHHHHHHHHHHHTTCCCBTTBCCHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHhhcCCCCCccCcCC-------------CccchHHHHHHHHHHHhCCcccccchhHHHHHHHH
Confidence 1357899999999999999999987643 234568999999999998754332 47999999
Q ss_pred HHHhcCccCCCCCCC
Q 006042 612 LLINSQLENGDFPQQ 626 (663)
Q Consensus 612 ~L~~~Q~~dG~w~~~ 626 (663)
||+++|++||+|.+.
T Consensus 618 ~Lls~Q~~DGGWge~ 632 (732)
T 1w6k_A 618 FLLSRQMADGGWGED 632 (732)
T ss_dssp HHHTTCCTTSCCCBC
T ss_pred HHHHhcccCCCCCCC
Confidence 999999999999875
No 5
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.95 E-value=3e-27 Score=256.92 Aligned_cols=214 Identities=16% Similarity=0.114 Sum_probs=169.8
Q ss_pred HHHHHHHHHhh-cccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHH
Q 006042 343 LGKGHDYLKKA-QIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAV 421 (663)
Q Consensus 343 l~ka~~wL~~~-Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~ 421 (663)
.++.++||.++ |..+ |+ |..-+.+ +...+-.++.+|..++ .+++.+.+++++
T Consensus 75 ~~~hi~~l~~~lq~~~---gg------------~~a~D~~----r~~l~y~~l~aL~lLg--------~~~~~~~~~r~v 127 (437)
T 2h6f_B 75 REKHFHYLKRGLRQLT---DA------------YECLDAS----RPWLCYWILHSLELLD--------EPIPQIVATDVC 127 (437)
T ss_dssp HHHHHHHHHHHTTEEC---GG------------GGGGTTC----HHHHHHHHHHHHHHTT--------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCC---CC------------cccccCC----CccHHHHHHHHHHHhC--------CCCCHHHHHHHH
Confidence 48899999999 7643 33 3322221 2234555677776654 235678899999
Q ss_pred HHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHH
Q 006042 422 NFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHY 501 (663)
Q Consensus 422 ~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~ 501 (663)
+||+++|++ ||||+.++.+ .+++.+|..+|.+|..++... ..+ ...++|+++|
T Consensus 128 ~~l~s~Q~~-dGGf~g~~~~---------------------~~~i~~T~~Al~aL~~lg~~~---~~~--~i~i~kav~~ 180 (437)
T 2h6f_B 128 QFLELCQSP-EGGFGGGPGQ---------------------YPHLAPTYAAVNALCIIGTEE---AYD--IINREKLLQY 180 (437)
T ss_dssp HHHHHHBCT-TSSBBSSTTC---------------------CBCHHHHHHHHHHHHHHCCHH---HHT--TSCHHHHHHH
T ss_pred HHHHHhCCC-CCCcCCccCC---------------------CcchhHHHHHHHHHHHhCCcc---ccc--chHHHHHHHH
Confidence 999999999 9999876532 246778999999999987430 000 1247999999
Q ss_pred HHHhcccCCCcccC-CCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCC
Q 006042 502 IEDEQTADGSWYGN-WGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKR 580 (663)
Q Consensus 502 L~~~Q~~DGsw~g~-wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~ 580 (663)
|++.|++||||++. ||.++++.|+.|+.+|..+|.. +.+.++|+++||+++|++||||++. ++.+
T Consensus 181 L~s~Q~~DGsf~~~~~Ge~d~~~ty~A~~~L~llg~~--~~~~v~k~~~~L~s~Q~~DGGwg~~------------pg~e 246 (437)
T 2h6f_B 181 LYSLKQPDGSFLMHVGGEVDVRSAYCAASVASLTNII--TPDLFEGTAEWIARCQNWEGGIGGV------------PGME 246 (437)
T ss_dssp HHTTBCTTSCBBSSTTCCBSHHHHHHHHHHHHHTTCC--CTTTTTTHHHHHHHHBCTTSSBCSS------------TTSC
T ss_pred HHHhCCCCCCeeecCCCCccchhHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCCCCCcCCC------------CCCC
Confidence 99999999999985 9988999999999999999875 4678999999999999999999987 3668
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCc-cCCCCCCC
Q 006042 581 STVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQL-ENGDFPQQ 626 (663)
Q Consensus 581 s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~-~dG~w~~~ 626 (663)
|++.+|+|||.||..+|..+. ..++++++||+++|. ++|||...
T Consensus 247 Sh~~~T~~Al~aL~~lg~~~~--~~~~rl~~wL~~rQ~~~~GGf~gR 291 (437)
T 2h6f_B 247 AHGGYTFCGLAALVILKRERS--LNLKSLLQWVTSRQMRFEGGFQGR 291 (437)
T ss_dssp CCHHHHHHHHHHHHHHTCGGG--SCHHHHHHHHHHTBCTTTCSBBSS
T ss_pred CCccHHHHHHHHHHHcCCCCc--ccHHHHHHHHHhcCCCCCCCccCC
Confidence 999999999999999998642 359999999999998 78998643
No 6
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.93 E-value=3.4e-25 Score=233.55 Aligned_cols=280 Identities=16% Similarity=0.102 Sum_probs=207.4
Q ss_pred HHHHHHHHHhhhhee-cCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCC
Q 006042 292 AFKKHLNRIADYIWL-GEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHF 370 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~-~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~ 370 (663)
...||++++.+.+.. .+.+.. ....+.+|-+-+++.+|...|..+. ...+++++||.+.|..+ |+|.
T Consensus 19 ~~~~h~~y~~~~~~~~~~~~~~-~~d~~r~~~~yw~l~~L~lLg~l~~--~~r~~~i~~l~s~Q~~d---GGF~------ 86 (331)
T 3dss_B 19 LLEKHADYIASYGSKKDDYEYC-MSEYLRMSGVYWGLTVMDLMGQLHR--MNKEEILVFIKSCQHEC---GGVS------ 86 (331)
T ss_dssp CHHHHHHHHHHTTSSSCGGGSG-GGGGGHHHHHHHHHHHHHHTTCGGG--SCHHHHHHHHHHTBCTT---SCBB------
T ss_pred hHHHHHHHHHHhccCCCCccce-eccccHHHHHHHHHHHHHHhCCCch--hhHHHHHHHHhhhcCCC---CCcC------
Confidence 478999999986421 111211 1125788999999999999885432 23688999999999765 5553
Q ss_pred CCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhc
Q 006042 371 SKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWL 450 (663)
Q Consensus 371 ~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~ 450 (663)
|++ ...|++..|..|+.+|..+... ....++++++||.++|++ ||||.....
T Consensus 87 --g~~------g~~~~l~~Ty~Al~~L~~l~~~---------~~id~~k~~~fL~~~Q~~-DGsf~~~~~---------- 138 (331)
T 3dss_B 87 --ASI------GHDPHLLYTLSAVQILTLYDSI---------HVINVDKVVAYVQSLQKE-DGSFAGDIW---------- 138 (331)
T ss_dssp --SST------TSCBCHHHHHHHHHHHHHTTCG---------GGSCHHHHHHHHHHTBCT-TSCBBSSTT----------
T ss_pred --CCC------CCCccHHHHHHHHHHHHHcCCc---------cHHHHHHHHHHHhccCCC-CCCEecccC----------
Confidence 111 2347888999999999887531 122368999999999999 999964211
Q ss_pred CcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCC-cchhHHHHHHH
Q 006042 451 NPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGI-CFIYGTCFALG 529 (663)
Q Consensus 451 ~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~-~~~Y~T~~aL~ 529 (663)
+ .+++..|..++.+|..++... ...++++++||+++|++||+|.+.++. .+...|++|+.
T Consensus 139 ------g-----e~d~~~ty~Al~~L~llg~~~--------~~~~~k~v~~L~s~Q~~dGGfg~~pg~esh~~~T~~al~ 199 (331)
T 3dss_B 139 ------G-----EIDTRFSFCAVATLALLGKLD--------AINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCCTG 199 (331)
T ss_dssp ------C-----CBCHHHHHHHHHHHHHHTCGG--------GSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHH
T ss_pred ------C-----CCchHHHHHHHHHHHhcCCCC--------HHHHHHHHHHHHHhCcCCCCcCCCCCCCCcHHHHHHHHH
Confidence 1 023445667777777776431 135899999999999999999988764 46778999999
Q ss_pred HHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHH
Q 006042 530 GLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRG 609 (663)
Q Consensus 530 aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~ 609 (663)
+|..+|... ...++|+++||+++|++||||++.+ +..+++..|.|++.+|..+|.... ..++++
T Consensus 200 aL~llg~~~--~~~~~~~~~wL~~~Q~~dGGf~gr~------------~k~~D~cys~w~l~~L~llg~~~~--~~~~~~ 263 (331)
T 3dss_B 200 FLAITSQLH--QVNSDLLGWWLCERQLPSGGLNGRP------------EKLPDVCYSWWVLASLKIIGRLHW--IDREKL 263 (331)
T ss_dssp HHHHTTCGG--GSCHHHHHHHHHTTBCTTSCBCSST------------TCCCCHHHHHHHHHHHHHTTCGGG--SCHHHH
T ss_pred HHHhccccc--hhhHHHHHHHHHHhCCCCCCcCCCC------------CCCCcchhHHHHHHHHHHcCCcch--hhHHHH
Confidence 999998763 4558999999999999999999873 446788999999999999987532 358999
Q ss_pred HHHHHhcCccC-CCCCCCccccccccccccccCCccchHHHHHHHHH
Q 006042 610 VKLLINSQLEN-GDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEY 655 (663)
Q Consensus 610 i~~L~~~Q~~d-G~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y 655 (663)
++||+++|+++ |||.... |..+ +.|-++|.|.||+.-
T Consensus 264 ~~fil~cQ~~~~GGf~~~p--g~~~-------d~~hT~~~l~~Ls~~ 301 (331)
T 3dss_B 264 RSFILACQDEETGGFADRP--GDMV-------DPFHTLFGIAGLSLL 301 (331)
T ss_dssp HHHHHHTBCTTTCCBCSST--TSCC-------BHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCcCCCC--CCCC-------CHHHHHHHHHHHHHc
Confidence 99999999987 9997653 2221 335567888888764
No 7
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B*
Probab=99.92 E-value=7.6e-25 Score=230.83 Aligned_cols=195 Identities=23% Similarity=0.295 Sum_probs=159.3
Q ss_pred CccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccc
Q 006042 386 VSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTY 465 (663)
Q Consensus 386 d~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~ 465 (663)
.++.|-.++.+|..++..+ .+ ..+++++||+++|++ ||||+..+.. .++
T Consensus 46 r~~~~yw~l~~L~lLg~l~------~~---~r~~~i~~l~s~Q~~-dGGF~g~~g~---------------------~~~ 94 (331)
T 3dss_B 46 RMSGVYWGLTVMDLMGQLH------RM---NKEEILVFIKSCQHE-CGGVSASIGH---------------------DPH 94 (331)
T ss_dssp HHHHHHHHHHHHHHTTCGG------GS---CHHHHHHHHHHTBCT-TSCBBSSTTS---------------------CBC
T ss_pred HHHHHHHHHHHHHHhCCCc------hh---hHHHHHHHHhhhcCC-CCCcCCCCCC---------------------Ccc
Confidence 4577899999998887422 12 347899999999999 9999865421 257
Q ss_pred cCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccC-CCCcchhHHHHHHHHHHHcCCCcCChHHH
Q 006042 466 VECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGN-WGICFIYGTCFALGGLQVAGKTYNNCLAI 544 (663)
Q Consensus 466 ~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~-wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i 544 (663)
+.+|..+|.+|..++.. + .+ .++++++||++.|++||||.+. ||..+++.|++|+.+|..+|.. +.+.+
T Consensus 95 l~~Ty~Al~~L~~l~~~-~-----~i--d~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~--~~~~~ 164 (331)
T 3dss_B 95 LLYTLSAVQILTLYDSI-H-----VI--NVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKL--DAINV 164 (331)
T ss_dssp HHHHHHHHHHHHHTTCG-G-----GS--CHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCG--GGSCH
T ss_pred HHHHHHHHHHHHHcCCc-c-----HH--HHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCC--CHHHH
Confidence 77899999999988642 1 12 3799999999999999999985 9988999999999999999975 46789
Q ss_pred HHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCC
Q 006042 545 RRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFP 624 (663)
Q Consensus 545 ~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~ 624 (663)
+|+++||+++|++||||++. ++.+|+..+|+||+.+|..++..+. ..++++++||+++|.++|||.
T Consensus 165 ~k~v~~L~s~Q~~dGGfg~~------------pg~esh~~~T~~al~aL~llg~~~~--~~~~~~~~wL~~~Q~~dGGf~ 230 (331)
T 3dss_B 165 EKAIEFVLSCMNFDGGFGCR------------PGSESHAGQIYCCTGFLAITSQLHQ--VNSDLLGWWLCERQLPSGGLN 230 (331)
T ss_dssp HHHHHHHHTTBCTTSCBCSS------------TTCCCCHHHHHHHHHHHHHTTCGGG--SCHHHHHHHHHTTBCTTSCBC
T ss_pred HHHHHHHHHhCcCCCCcCCC------------CCCCCcHHHHHHHHHHHHhccccch--hhHHHHHHHHHHhCCCCCCcC
Confidence 99999999999999999987 3668999999999999999987642 358999999999999999997
Q ss_pred CCccccccccccc
Q 006042 625 QQEIMGVFMRNCM 637 (663)
Q Consensus 625 ~~~~~g~f~~~~~ 637 (663)
... +..+..||
T Consensus 231 gr~--~k~~D~cy 241 (331)
T 3dss_B 231 GRP--EKLPDVCY 241 (331)
T ss_dssp SST--TCCCCHHH
T ss_pred CCC--CCCCcchh
Confidence 543 33444554
No 8
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.92 E-value=5.8e-25 Score=234.63 Aligned_cols=228 Identities=13% Similarity=0.097 Sum_probs=175.0
Q ss_pred HHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHH
Q 006042 343 LGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVN 422 (663)
Q Consensus 343 l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~ 422 (663)
.+|-++||.+...... +.+. ..+. ...+.+-+++.+|..++..+ .++ .+++++
T Consensus 22 ~~~H~~y~~~~l~~lp--~~~~--------------~~d~--~r~~~~yw~l~~L~lLg~l~------~~~---~~~~i~ 74 (377)
T 1n4q_B 22 RDRHVRFFQRCLQVLP--ERYS--------------SLET--SRLTIAFFALSGLDMLDSLD------VVN---KDDIIE 74 (377)
T ss_dssp HHHHHHHHHHHHHEEC--GGGG--------------GGGG--GHHHHHHHHHHHHHHTTCGG------GSC---HHHHHH
T ss_pred HHHHHHHHHHHhhcCC--cccc--------------cccc--chHHHHHHHHHHHHHhCCCC------ccC---HHHHHH
Confidence 5777889988864321 1211 1111 13466788888888876421 132 689999
Q ss_pred HHHhhcc---------ccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHH
Q 006042 423 FLLSLQD---------EKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIEN 493 (663)
Q Consensus 423 wLl~~Qn---------~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~ 493 (663)
||+++|+ + ||||+.++..+.+. .+..++. .+.+.|++++.+|..+|.+|..++...+. +
T Consensus 75 wils~Q~~p~~~~~~~~-~GGF~g~~~~~~p~-~d~~~~~---~~~~~d~~~v~~T~~Al~~L~~lg~~~~~-----i-- 142 (377)
T 1n4q_B 75 WIYSLQVLPTEDRSNLD-RCGFRGSSYLGIPF-NPSKNPG---TAHPYDSGHIAMTYTGLSCLIILGDDLSR-----V-- 142 (377)
T ss_dssp HHHTTEECCCTTCTTGG-GCEECSSSTTCCCC-CSSCSCC---CCCTTCCCCHHHHHHHHHHHHHTTCCSTT-----S--
T ss_pred HHHHhcCCccccccCCC-CCccCCCcccCCCh-hhhcccc---ccccCCCCCHHHHHHHHHHHHHhCcccch-----h--
Confidence 9999999 6 89999998764322 2333333 25678899999999999999999754321 2
Q ss_pred HHHHHHHHHHHhcccCCCccc--CCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCc
Q 006042 494 FIVKAVHYIEDEQTADGSWYG--NWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNK 571 (663)
Q Consensus 494 ~i~rav~~L~~~Q~~DGsw~g--~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~ 571 (663)
..+++++||++.|++||||++ .||+++++.|+.|+.++..+|.. +.+.++|+++||+++|+.|||||+++
T Consensus 143 d~~~~~~fL~~~Q~~DGSf~g~~~wGe~DirftY~Al~~l~llg~~--~~~~v~ka~~fL~scQn~DGGfGe~p------ 214 (377)
T 1n4q_B 143 DKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNW--SGMDMKKAISYIRRSMSYDNGLAQGA------ 214 (377)
T ss_dssp CHHHHHHHHHHHBCTTSCBCSSTTCCCCBHHHHHHHHHHHHHTTCG--GGSCHHHHHHHHHHTBCTTSSBBSST------
T ss_pred hHHHHHHHHHHhcCCCCCeeeccCCCcchhHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhcCCCCCCCCCC------
Confidence 248999999999999999998 69999999999999999999874 57789999999999999999999973
Q ss_pred cccCCCCCCCcHHHHHHHHHHHHHcCCCCCC-c-HHHHHHHHHHHhcCccCCCCCC
Q 006042 572 IYTPLEGKRSTVVHTALAVLSLISAGQADRD-P-TPIHRGVKLLINSQLENGDFPQ 625 (663)
Q Consensus 572 ~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~-~-~~v~r~i~~L~~~Q~~dG~w~~ 625 (663)
+.+|+..+|+||+.+|..++..+.. + ..++|+++||+++| +|||..
T Consensus 215 ------~~ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~G 262 (377)
T 1n4q_B 215 ------GLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHG 262 (377)
T ss_dssp ------TSCBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCS
T ss_pred ------CCCCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCC
Confidence 6689999999999999988865321 1 16899999999999 788753
No 9
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.90 E-value=7.1e-23 Score=222.73 Aligned_cols=218 Identities=12% Similarity=0.069 Sum_probs=167.9
Q ss_pred cchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccC
Q 006042 388 DCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVE 467 (663)
Q Consensus 388 d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~ 467 (663)
+..-.++.+|..++ ++++.+..+++++||+++|++ ||||+.++.. .+.+++.
T Consensus 90 wl~Yw~l~aL~LLg--------~~ld~~~~~~~I~~Ils~Q~~-dGGFgg~p~~-------------------~~~~hla 141 (520)
T 3q7a_B 90 WLVFWTVHSLDLLG--------VALDQGTKDRVVSTLLHFLSP-KGGFGGGPAN-------------------SQIPHLL 141 (520)
T ss_dssp HHHHHHHHHHHHHT--------CCCCHHHHHHHHHHHHTTBCT-TSSBCSSCTT-------------------TSCCCHH
T ss_pred HHHHHHHHHHHHhC--------CCCChHHHHHHHHHHHHHcCC-CCCCCCCCCC-------------------CCCCcHH
Confidence 45666777776664 335677889999999999999 9999876521 2457899
Q ss_pred cHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCccc-CCCCcchhHHHHHHHHHHHcCCCcCChHHHHH
Q 006042 468 CTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYG-NWGICFIYGTCFALGGLQVAGKTYNNCLAIRR 546 (663)
Q Consensus 468 ~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g-~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~r 546 (663)
+|..+|.+|..+++.+|+++.++++..++++++||++.|++||||.+ .||++++|+|++|+.+|..+|.. +.+.++|
T Consensus 142 ~TysAV~aL~ilg~~~p~~~~~~Id~~r~k~v~fL~slQ~~DGSF~g~~wGe~Dir~TY~Al~~L~lLg~~--~~~~v~k 219 (520)
T 3q7a_B 142 PTYASVCSLAIAGNDSSTGGWKDLAAARQSIYEFFMRCKRPDGGFVVCEGGEVDVRGTYCLLVVATLLDII--TPELLHN 219 (520)
T ss_dssp HHHHHHHHHHHHCBSSTTSBHHHHHHTHHHHHHHHHHHBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCC--CHHHHTT
T ss_pred HHHHHHHHHHHhCccccchhhhhhhhHHHHHHHHHHHHhCCCCCEecCCCCCchHHHHHHHHHHHHHcCCC--ChHHHHH
Confidence 99999999999998767677677776689999999999999999999 59999999999999999999984 5789999
Q ss_pred HHHHHHhhcCCCCCccCCCc----CCCC----ccccC---CCCCCCcHHHHHHHHHHHHHcCCCCC----CcHHHHHHHH
Q 006042 547 AVDFLLNAQSDDGGWGESYK----SCPN----KIYTP---LEGKRSTVVHTALAVLSLISAGQADR----DPTPIHRGVK 611 (663)
Q Consensus 547 a~~~Ll~~Q~~DGgWg~~~~----s~~~----~~y~~---~~g~~s~~~~Ta~ALlaL~~ag~~~~----~~~~v~r~i~ 611 (663)
+++||+++|+.|||||++.. ...+ +.-.| .|+.+++...|.+||.+|..++..+. ....+++.++
T Consensus 220 av~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~ 299 (520)
T 3q7a_B 220 VDKFVSACQTYEGGFACASFPFPSVVPSTSAFPTSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALR 299 (520)
T ss_dssp HHHHHHTTBCTTSSBCSCEEEEC------------CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHH
T ss_pred HHHHHHHhcCCCCCccCccccccccccccccccccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHH
Confidence 99999999999999998310 0000 00000 14778999999999999987776420 1124889999
Q ss_pred HHHhcCc---cCCCCCCCccccccccccc
Q 006042 612 LLINSQL---ENGDFPQQEIMGVFMRNCM 637 (663)
Q Consensus 612 ~L~~~Q~---~dG~w~~~~~~g~f~~~~~ 637 (663)
||+++|. ++|||.... .-....||
T Consensus 300 WL~~RQ~~~~e~GGF~GR~--NKlvD~CY 326 (520)
T 3q7a_B 300 WTVLQQGEPIEGGGFRGRT--NKLVDGCY 326 (520)
T ss_dssp HHHHTBCCGGGTTCBBSST--TSCBCTTH
T ss_pred HHHHhCCcccCCCcccCCC--CCCCchhh
Confidence 9999996 468886432 22455554
No 10
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.88 E-value=6.6e-22 Score=207.85 Aligned_cols=200 Identities=21% Similarity=0.210 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHH
Q 006042 415 ERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENF 494 (663)
Q Consensus 415 ~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~ 494 (663)
+.+++++++++++|++ ||||++|+..+ ++...|++|+++|..+.+... ..++.
T Consensus 54 ~~i~~g~~~~l~~q~~-dGgf~~f~~~~---------------------~s~wlTa~v~~~l~~a~~~~~-----v~~~~ 106 (310)
T 2wy7_A 54 ELIKKGYTQQLAFRQP-SSAFAAFVKRA---------------------PSTWLTAYVVKVFSLAVNLIA-----IDSQV 106 (310)
T ss_dssp HHHHHHHHHHHTTBCT-TSCBCSSTTSC---------------------CCHHHHHHHHHHHHHHTTTSC-----CCHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCcccCCCCC---------------------ccHHHHHHHHHHHHHHHhcCC-----CCHHH
Confidence 5688999999999999 99999987532 456689999999999875321 11468
Q ss_pred HHHHHHHHHH-hcccCCCcccCCCCcc--------------hhHHHHHHHHHHHcCCC-----cCChHHHHHHHHHHHhh
Q 006042 495 IVKAVHYIED-EQTADGSWYGNWGICF--------------IYGTCFALGGLQVAGKT-----YNNCLAIRRAVDFLLNA 554 (663)
Q Consensus 495 i~rav~~L~~-~Q~~DGsw~g~wg~~~--------------~Y~T~~aL~aL~~~g~~-----~~~~~~i~ra~~~Ll~~ 554 (663)
|+++++||.+ .|++||+|.+.|++++ .+.|+++|.+|...|.. ...++.|+||++||.++
T Consensus 107 i~~a~~~L~~~~Q~~dGsf~~~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~ 186 (310)
T 2wy7_A 107 LCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEAN 186 (310)
T ss_dssp HHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCccccCCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHH
Confidence 9999999996 9999999998886543 45699999999988431 12578999999999999
Q ss_pred cCC-CCCccCCCcC-------------------C-CCccccCCCCCC-CcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q 006042 555 QSD-DGGWGESYKS-------------------C-PNKIYTPLEGKR-STVVHTALAVLSLISAGQADRDPTPIHRGVKL 612 (663)
Q Consensus 555 Q~~-DGgWg~~~~s-------------------~-~~~~y~~~~g~~-s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~ 612 (663)
|+. +++|+....+ + .+..|..-++.. .+++.|||||++|+.++.. +.+.++++|
T Consensus 187 ~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~w 262 (310)
T 2wy7_A 187 YMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPVVRW 262 (310)
T ss_dssp GGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSSCHHHHHHHHHHHHHHHHHHTCT----TTHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCCCcccchHHHHHHHHHHHhcCCh----hhHHHHHHH
Confidence 875 2322211100 0 011122111211 2678999999999998753 358999999
Q ss_pred HHhcCccCCCCCCCccccccccccccccCCccchHHHHHHHHHHHhCCC
Q 006042 613 LINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVPL 661 (663)
Q Consensus 613 L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~~~~ 661 (663)
|+++|+++|+|... +.++++|+||++|.++...
T Consensus 263 L~~qq~~~Ggw~sT----------------q~T~~aL~AL~~y~~~~~~ 295 (310)
T 2wy7_A 263 LNEQRYYGGGYGST----------------QATFMVFQALAQYQKDAPD 295 (310)
T ss_dssp HHHTTCCCCSTTCH----------------HHHHHHHHHHHHHHHHCC-
T ss_pred HHHccCCCCCeecc----------------HHHHHHHHHHHHHHHHcCC
Confidence 99999999999864 4677899999999987754
No 11
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.88 E-value=1.1e-21 Score=202.83 Aligned_cols=198 Identities=19% Similarity=0.186 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHH
Q 006042 415 ERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENF 494 (663)
Q Consensus 415 ~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~ 494 (663)
+.|++++++++++|++ ||||++|+.++ ++...|++|+++|..+.+... ..++.
T Consensus 38 ~~i~~g~~~~l~~q~~-dGgf~~f~~~~---------------------~s~wlTa~v~~~l~~a~~~~~-----v~~~~ 90 (277)
T 1qqf_A 38 ELIKKGYTQQLAFKQP-ISAYAAFNNRP---------------------PSTWLTAYVSRVFSLAANLIA-----IDSQV 90 (277)
T ss_dssp HHHHHHHHHHHTTBCT-TSCBCSSTTSC---------------------CCHHHHHHHHHHHHHHTTTSC-----CCHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCccccCCCC---------------------ccHHHHHHHHHHHHHHhhcCC-----CCHHH
Confidence 5688999999999999 99999987532 456789999999999875321 11468
Q ss_pred HHHHHHHHHH-hcccCCCcccCCCCcc--------------hhHHHHHHHHHHHcCCC-----cCChHHHHHHHHHHHhh
Q 006042 495 IVKAVHYIED-EQTADGSWYGNWGICF--------------IYGTCFALGGLQVAGKT-----YNNCLAIRRAVDFLLNA 554 (663)
Q Consensus 495 i~rav~~L~~-~Q~~DGsw~g~wg~~~--------------~Y~T~~aL~aL~~~g~~-----~~~~~~i~ra~~~Ll~~ 554 (663)
|+++++||.+ .|++||+|.+.|++++ .+.|+++|.+|...|.. ...++.|+||++||.++
T Consensus 91 i~~a~~~L~~~~Q~~dG~f~~~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~ 170 (277)
T 1qqf_A 91 LCGAVKWLILEKQKPDGVFQEDGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEAS 170 (277)
T ss_dssp HHHHHHHHHHHHBCTTSCBCCSSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCccCCccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHH
Confidence 9999999995 9999999998876543 45699999999887431 12578999999999999
Q ss_pred cCC-CCCccCCCcCC-------------------C-CccccCCCCC-CCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q 006042 555 QSD-DGGWGESYKSC-------------------P-NKIYTPLEGK-RSTVVHTALAVLSLISAGQADRDPTPIHRGVKL 612 (663)
Q Consensus 555 Q~~-DGgWg~~~~s~-------------------~-~~~y~~~~g~-~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~ 612 (663)
|+. +++|+....++ . +..|..-++. ..+++.|||||++|+.++.. +.+.++++|
T Consensus 171 ~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~w 246 (277)
T 1qqf_A 171 YLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQQLYNVEATSYALLALLLLKDF----DSVPPVVRW 246 (277)
T ss_dssp HTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTCHHHHHHHHHHHHHHHHHTTCT----TSHHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCCccchhHHHHHHHHHHHhcCCh----hhHHHHHHH
Confidence 875 23221110000 0 1111110121 12678999999999998753 358999999
Q ss_pred HHhcCccCCCCCCCccccccccccccccCCccchHHHHHHHHHHHhC
Q 006042 613 LINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRV 659 (663)
Q Consensus 613 L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~~ 659 (663)
|+++|+++|+|... +.+++.|.||++|..++
T Consensus 247 L~~qq~~~Ggw~sT----------------q~T~~aL~AL~~y~~~~ 277 (277)
T 1qqf_A 247 LNDERYYGGGYGST----------------QATFMVFQALAQYRADV 277 (277)
T ss_dssp HHHCCCCTTSTTCH----------------HHHHHHHHHHHHHHHHC
T ss_pred HHHccCCCCCeecc----------------hHHHHHHHHHHHHHHhC
Confidence 99999999999865 46789999999998753
No 12
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=99.88 E-value=7.9e-22 Score=214.37 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=198.2
Q ss_pred HHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCC
Q 006042 293 FKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSK 372 (663)
Q Consensus 293 ~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~ 372 (663)
..+|+++|.+.+- ..+|.+..-..+..|-+-+++.+|.-.|...+ .+.++++++||.+.|..+ |+|...
T Consensus 75 ~~~hi~~l~~~lq-~~~gg~~a~D~~r~~l~y~~l~aL~lLg~~~~-~~~~~r~v~~l~s~Q~~d---GGf~g~------ 143 (437)
T 2h6f_B 75 REKHFHYLKRGLR-QLTDAYECLDASRPWLCYWILHSLELLDEPIP-QIVATDVCQFLELCQSPE---GGFGGG------ 143 (437)
T ss_dssp HHHHHHHHHHHTT-EECGGGGGGTTCHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHBCTT---SSBBSS------
T ss_pred HHHHHHHHHHcCC-CCCCCcccccCCCccHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCCC---CCcCCc------
Confidence 6799999998742 23343322224556777778888888885433 467899999999999876 555411
Q ss_pred CcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCc
Q 006042 373 GAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNP 452 (663)
Q Consensus 373 GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~ 452 (663)
. .+.+++..|..||.+|..++.... .....++++++||.++|++ ||||......
T Consensus 144 ---~-----~~~~~i~~T~~Al~aL~~lg~~~~------~~~i~i~kav~~L~s~Q~~-DGsf~~~~~G----------- 197 (437)
T 2h6f_B 144 ---P-----GQYPHLAPTYAAVNALCIIGTEEA------YDIINREKLLQYLYSLKQP-DGSFLMHVGG----------- 197 (437)
T ss_dssp ---T-----TCCBCHHHHHHHHHHHHHHCCHHH------HTTSCHHHHHHHHHTTBCT-TSCBBSSTTC-----------
T ss_pred ---c-----CCCcchhHHHHHHHHHHHhCCccc------ccchHHHHHHHHHHHhCCC-CCCeeecCCC-----------
Confidence 1 123577899999999988863100 0112378999999999999 9999743211
Q ss_pred ccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCC-CcchhHHHHHHHHH
Q 006042 453 VEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWG-ICFIYGTCFALGGL 531 (663)
Q Consensus 453 ~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg-~~~~Y~T~~aL~aL 531 (663)
.+++.-|..++.+|..++... .+.++|+++||+++|++||+|.+..+ ..+...|++||.||
T Consensus 198 ----------e~d~~~ty~A~~~L~llg~~~--------~~~v~k~~~~L~s~Q~~DGGwg~~pg~eSh~~~T~~Al~aL 259 (437)
T 2h6f_B 198 ----------EVDVRSAYCAASVASLTNIIT--------PDLFEGTAEWIARCQNWEGGIGGVPGMEAHGGYTFCGLAAL 259 (437)
T ss_dssp ----------CBSHHHHHHHHHHHHHTTCCC--------TTTTTTHHHHHHHHBCTTSSBCSSTTSCCCHHHHHHHHHHH
T ss_pred ----------CccchhHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHccCCCCCcCCCCCCCCCccHHHHHHHHH
Confidence 012334666667776665431 13578999999999999999987654 34566799999999
Q ss_pred HHcCCCcCChHHHHHHHHHHHhhcC-CCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCC---------C-
Q 006042 532 QVAGKTYNNCLAIRRAVDFLLNAQS-DDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQA---------D- 600 (663)
Q Consensus 532 ~~~g~~~~~~~~i~ra~~~Ll~~Q~-~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~---------~- 600 (663)
..+|.. ....++|+++||+++|. ++|||.+.+ +...++..|.|++-+|...+.. .
T Consensus 260 ~~lg~~--~~~~~~rl~~wL~~rQ~~~~GGf~gRp------------~K~~D~cYSfw~~a~L~lL~~~~~~~~~~~~~~ 325 (437)
T 2h6f_B 260 VILKRE--RSLNLKSLLQWVTSRQMRFEGGFQGRC------------NKLVDGCYSFWQAGLLPLLHRALHAQGDPALSM 325 (437)
T ss_dssp HHHTCG--GGSCHHHHHHHHHHTBCTTTCSBBSST------------TSCBCTTHHHHTTTHHHHHHHHHHHTTCTTCCS
T ss_pred HHcCCC--CcccHHHHHHHHHhcCCCCCCCccCCC------------CCccchHHHHHHHHHHHHHhhhhhccccccccc
Confidence 999986 35578999999999998 789998763 3345667788877666543210 0
Q ss_pred -CCcHHHHHHHHHHHh-cCccCCCCCCCccccccccccccccCCccchHHHHHHHHHH
Q 006042 601 -RDPTPIHRGVKLLIN-SQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYR 656 (663)
Q Consensus 601 -~~~~~v~r~i~~L~~-~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~ 656 (663)
......++..+||++ +|.++|||.... |..+ ..|-++|.|-+|+...
T Consensus 326 ~~~l~d~~~l~~yIL~~~Q~~~GGf~d~P--g~~~-------D~yHT~y~L~gLsl~~ 374 (437)
T 2h6f_B 326 SHWMFHQQALQEYILMCCQCPAGGLLDKP--GKSR-------DFYHTCYCLSGLSIAQ 374 (437)
T ss_dssp SCCSSCHHHHHHHHHHHSBCTTSCBCSST--TSCC-------CHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHccCCCCCccCCC--CCCC-------CHHHHHHHHHHHHHhc
Confidence 001135778899997 888999987653 2222 2344668888888764
No 13
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.87 E-value=6.7e-22 Score=212.47 Aligned_cols=234 Identities=17% Similarity=0.169 Sum_probs=162.2
Q ss_pred CCcccCccCCCCCCCccchHHHHHHHHHhcC---CCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhh
Q 006042 372 KGAWTFSDQDHGWQVSDCTAEGLKCVLQLSL---MPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLE 448 (663)
Q Consensus 372 ~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~---~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~ 448 (663)
|+||++++.+..+|++ .++..|..... .+.+. +....+.++++++||+++|++ ||||++|+.++
T Consensus 51 P~Gc~EQ~~s~~~P~~----~v~~~l~~~~~w~~~~~~~--~~~~~~~i~~g~~~ll~~Q~~-dGgf~~~~~~~------ 117 (367)
T 1hzf_A 51 PRGCGEQTMIYLAPTL----AASRYLDKTEQWSTLPPET--KDHAVDLIQKGYMRIQQFRKA-DGSYAAWLSRD------ 117 (367)
T ss_dssp CCSSHHHHHHHHHHHH----HHHHHHHHTTCSTTSCTTH--HHHHHHHHHHHHHHHHTTBCT-TSCBCSSTTSC------
T ss_pred CCCCHHHHHHHHHHHH----HHHHHHHHhhhcccCChhH--HHHHHHHHHHHHHHHHhccCC-CCCeeccCCCC------
Confidence 5788888776667764 44444443322 11100 001235799999999999999 99999987543
Q ss_pred hcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcc--------
Q 006042 449 WLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICF-------- 520 (663)
Q Consensus 449 ~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~-------- 520 (663)
++...|++|+++|..+++...- .++.|++|++||++.|++||+|.+.+...+
T Consensus 118 ---------------~~~~lTa~v~~~l~~a~~~~~v-----~~~~i~~a~~~L~~~Q~~dG~~~~~~~~~~~~~~gg~~ 177 (367)
T 1hzf_A 118 ---------------SSTWLTAFVLKVLSLAQEQVGG-----SPEKLQETSNWLLSQQQADGSFQDPCPVLDRSMQGGLV 177 (367)
T ss_dssp ---------------CCHHHHHHHHHHHHHHGGGTCC-----CHHHHHHHHHHHGGGBCTTSCBCCSSCCSCGGGGGGGS
T ss_pred ---------------CcHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHhhccCCCcccccccccccccCCCC
Confidence 2455799999999998765321 146899999999999999999998765433
Q ss_pred -----hhHHHHHHHHHHHcCCCc----------CChHHHHHHHHHHHhh--cC---------------------------
Q 006042 521 -----IYGTCFALGGLQVAGKTY----------NNCLAIRRAVDFLLNA--QS--------------------------- 556 (663)
Q Consensus 521 -----~Y~T~~aL~aL~~~g~~~----------~~~~~i~ra~~~Ll~~--Q~--------------------------- 556 (663)
.+.|+++|.||...|... ..++.|+||++||.++ |+
T Consensus 178 ~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~~~~~~~ 257 (367)
T 1hzf_A 178 GNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPADLRGVA 257 (367)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 678999999999876421 1246899999999876 32
Q ss_pred ---------CCCC---ccCCCcCC-------CCc----cccCCCCCCC-cHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q 006042 557 ---------DDGG---WGESYKSC-------PNK----IYTPLEGKRS-TVVHTALAVLSLISAGQADRDPTPIHRGVKL 612 (663)
Q Consensus 557 ---------~DGg---Wg~~~~s~-------~~~----~y~~~~g~~s-~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~ 612 (663)
.+|+ |++...+- ..+ .+.+ ...| +++.|||||++|+..+.. .+.+.++++|
T Consensus 258 ~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~--~~~s~~vE~TAyaLLall~~~~~---~~~~~~iv~W 332 (367)
T 1hzf_A 258 HNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMP--QAPALWIETTAYALLHLLLHEGK---AEMADQASAW 332 (367)
T ss_dssp HHHHHTTCEECSSCEECC--------------------------CCCHHHHHHHHHHHHHHHHHTCS---SHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccC--CCccchhHHHHHHHHHHHhccCc---hhhhHHHHHH
Confidence 1333 66532110 000 0111 1123 788999999999977532 2479999999
Q ss_pred HHhcCccCCCCCCCccccccccccccccCCccchHHHHHHHHHHHhC
Q 006042 613 LINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRV 659 (663)
Q Consensus 613 L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~~ 659 (663)
|+++|+.+|+|.+. ..+++.|.||+.|..+.
T Consensus 333 L~~qrn~~Ggw~sT----------------qdTvvAL~AL~~y~~~~ 363 (367)
T 1hzf_A 333 LTRQGSFQGGFRST----------------QDTVIALDALSAYWIAS 363 (367)
T ss_dssp HHHHTTSTTCSCSH----------------HHHHHHHHHHHHHHHHH
T ss_pred HHhCcCCCCCcccH----------------HHHHHHHHHHHHHHHHc
Confidence 99999999999865 46789999999997654
No 14
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.86 E-value=5.7e-22 Score=209.38 Aligned_cols=203 Identities=17% Similarity=0.118 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCCccccCCCC--------------------CCCccc-C---ccCCCCCCCccchHHHHHH
Q 006042 341 SVLGKGHDYLKKAQIRDNPVGDYKGNFRHF--------------------SKGAWT-F---SDQDHGWQVSDCTAEGLKC 396 (663)
Q Consensus 341 ~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~--------------------~~GgW~-f---s~~~~~~pd~d~Ta~al~a 396 (663)
...+++.+.|+..|... |+|.+...-. .+|.|. . ...+.+++|.|+|+.++++
T Consensus 81 ~~A~~iAd~ll~~Q~~~---GGW~kn~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~a 157 (408)
T 1r76_A 81 KAARHVADVIVSFQTPA---GGWGKNQPRDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRF 157 (408)
T ss_dssp HHHHHHHHHHHHHCCTT---SCCCSSCCSSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHH
T ss_pred HHHHHHHHHHHHccccC---CCCCCccccccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHH
Confidence 34688899999999876 7887532100 012220 1 0124677999999999999
Q ss_pred HHHhcCC-CCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHH
Q 006042 397 VLQLSLM-PPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEA 475 (663)
Q Consensus 397 L~~~~~~-~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~a 475 (663)
|..+... .. ..++..++++.||++||++||++ ||||+.|+.++ ..++++|+ |.| +.|++||+.
T Consensus 158 L~rv~~~~t~--~~~~~y~~Ai~Rgl~wlL~mQ~~-nGGWpqFdpdn-~~y~~~Ip----FnD--------Dvt~rvle~ 221 (408)
T 1r76_A 158 LAQVVSQLAP--EEAAPYRDAALKGIEYLLASQFP-NGGWPQVWPLE-GGYHDAIT----YND--------DALVHVAEL 221 (408)
T ss_dssp HHHHHHHSCG--GGCHHHHHHHHHHHHHHHHHSCT-TSCCBSBSSCC-CGGGGSEE----CGG--------GHHHHHHHH
T ss_pred HHHHHhhccc--cccHHHHHHHHHHHHHHHHccCC-CCCCcCcCccc-cccccCCC----cCc--------HHHHHHHHH
Confidence 9886431 10 01235678999999999999999 99999999888 57888886 433 789999999
Q ss_pred HHHhhhhCCC------cchHHHHHHHHHHHHHHHHhccc-CCCcccCCCCcchhHHHH----------HHHHHHHc----
Q 006042 476 FMLFKKLYPH------HRKKEIENFIVKAVHYIEDEQTA-DGSWYGNWGICFIYGTCF----------ALGGLQVA---- 534 (663)
Q Consensus 476 L~~~~~~~~~------~~~~~~~~~i~rav~~L~~~Q~~-DGsw~g~wg~~~~Y~T~~----------aL~aL~~~---- 534 (663)
|..++..... ..+....++++||++||++.|.+ ||+|+ +||.+|+|+|.. +|.++..+
T Consensus 222 L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~ 300 (408)
T 1r76_A 222 LSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILL 300 (408)
T ss_dssp HHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHH
T ss_pred HHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHH
Confidence 9988752111 11234668999999999999999 99999 999999998766 44444333
Q ss_pred -----CCCc-CChHHHHHHHHHHHhhcCCCCCccC
Q 006042 535 -----GKTY-NNCLAIRRAVDFLLNAQSDDGGWGE 563 (663)
Q Consensus 535 -----g~~~-~~~~~i~ra~~~Ll~~Q~~DGgWg~ 563 (663)
.... +..++|++|++||.++|++||+|-.
T Consensus 301 ~LM~~~~~~~~~~~aI~~Av~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 301 FLMEIEAPSDAVKQAIRGGVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp HHTTSSSCCHHHHHHHHHHHHHHHHSCCCC-----
T ss_pred HHccCCCCCHHHHHHHHHHHHHHHHhhcCCCceee
Confidence 2211 1245899999999999999999973
No 15
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.83 E-value=3.1e-21 Score=198.23 Aligned_cols=185 Identities=16% Similarity=0.192 Sum_probs=140.5
Q ss_pred HHHHHhhcccCCCCCCccccC--CCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHH
Q 006042 347 HDYLKKAQIRDNPVGDYKGNF--RHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFL 424 (663)
Q Consensus 347 ~~wL~~~Q~~~~~~G~~~~~~--~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wL 424 (663)
.+-|+.-|... |+|.+.. .....++ ...+..++|.|+|+.++++|..+.... .++..++++.||++||
T Consensus 37 Ad~~l~~Q~~~---GGW~kn~d~~~~~~~~---~~~~~~t~DnddTa~vl~~Larv~~~~----~~~~y~~Ai~Rgl~wl 106 (332)
T 1gxm_A 37 ADVVLSYQQNN---GGWPKNLDYNSVGNGG---GGNESGTIDNGATITEMVFLAEVYKSG----GNTKYRDAVRKAANFL 106 (332)
T ss_dssp HHHHHHTCCTT---SCCCSCCCTTTCCCCC---CCCSCEECGGGTTHHHHHHHHHHHHHH----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcCC---CCCCcceecccccccC---CCCCCCCccCccHHHHHHHHHHHhccc----cchHHHHHHHHHHHHH
Confidence 67788889876 7887642 1111111 112456789999999999998764311 1234678999999999
Q ss_pred HhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcc--------hHHHHHHHH
Q 006042 425 LSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHR--------KKEIENFIV 496 (663)
Q Consensus 425 l~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~--------~~~~~~~i~ 496 (663)
++||++ ||||+.|+.++ ..++++|+ |.| |+|++||++|..++.....+. .....++++
T Consensus 107 L~mQ~~-nGGWpqFdpd~-~~Yl~~Ip----FnD--------DvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~ 172 (332)
T 1gxm_A 107 VNSQYS-TGALPQFYPLK-GGYSDHAT----FND--------NGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVT 172 (332)
T ss_dssp HHHCCT-TSCCBSEESCC-SGGGGSEE----CGG--------GHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHH
T ss_pred HhccCC-CCCccccCCCc-ccccccCC----cch--------HHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHH
Confidence 999999 99999999886 67888886 433 789999999999864222220 134568999
Q ss_pred HHHHHHHHhcccCCCcccCCCCcchhHHHH----------HHHHHHHcC-------CCcCChH----HHHHHHHHHHhhc
Q 006042 497 KAVHYIEDEQTADGSWYGNWGICFIYGTCF----------ALGGLQVAG-------KTYNNCL----AIRRAVDFLLNAQ 555 (663)
Q Consensus 497 rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~----------aL~aL~~~g-------~~~~~~~----~i~ra~~~Ll~~Q 555 (663)
||++||++.|.++|||.++||.+|.|+|.. +|.++..+| .+. ++ +|++|++||.++|
T Consensus 173 Rgid~Llk~Qe~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~--~~~v~~aI~~Av~WL~~~q 250 (332)
T 1gxm_A 173 KGTDYILKAQWKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQ--TAEIEQAVRAGVAWFNSPR 250 (332)
T ss_dssp HHHHHHHHHSCEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCC--CHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHhhCccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999988 776666553 332 34 7999999999999
Q ss_pred CC
Q 006042 556 SD 557 (663)
Q Consensus 556 ~~ 557 (663)
++
T Consensus 251 ~~ 252 (332)
T 1gxm_A 251 TY 252 (332)
T ss_dssp TS
T ss_pred cc
Confidence 93
No 16
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=99.82 E-value=3.5e-19 Score=190.07 Aligned_cols=295 Identities=14% Similarity=0.087 Sum_probs=195.4
Q ss_pred HHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhccc-CC-----CCCCccc
Q 006042 292 AFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIR-DN-----PVGDYKG 365 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~-~~-----~~G~~~~ 365 (663)
...+|++++.+.+-..+... .....+..|-+-+++.+|.-.|..++.. .+++++||.+.|+. +. ..|+|..
T Consensus 21 ~~~~H~~y~~~~l~~lp~~~-~~~d~~r~~~~yw~l~~L~lLg~l~~~~--~~~~i~wils~Q~~p~~~~~~~~~GGF~g 97 (377)
T 1n4q_B 21 LRDRHVRFFQRCLQVLPERY-SSLETSRLTIAFFALSGLDMLDSLDVVN--KDDIIEWIYSLQVLPTEDRSNLDRCGFRG 97 (377)
T ss_dssp CHHHHHHHHHHHHHEECGGG-GGGGGGHHHHHHHHHHHHHHTTCGGGSC--HHHHHHHHHTTEECCCTTCTTGGGCEECS
T ss_pred CHHHHHHHHHHHhhcCCccc-cccccchHHHHHHHHHHHHHhCCCCccC--HHHHHHHHHHhcCCccccccCCCCCccCC
Confidence 47899999998874334332 1122567889999999998888544322 78999999999982 10 0144432
Q ss_pred cCCCCCCCcccCcc-------CCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCcccc
Q 006042 366 NFRHFSKGAWTFSD-------QDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVW 438 (663)
Q Consensus 366 ~~~~~~~GgW~fs~-------~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~ 438 (663)
...+ +-+|.+ ...-+|.+.+|..||.+|..++..- ..++ .+++++||.++|++ ||||...
T Consensus 98 ~~~~----~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~-----~~id---~~~~~~fL~~~Q~~-DGSf~g~ 164 (377)
T 1n4q_B 98 SSYL----GIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDL-----SRVD---KEACLAGLRALQLE-DGSFCAV 164 (377)
T ss_dssp SSTT----CCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCS-----TTSC---HHHHHHHHHHHBCT-TSCBCSS
T ss_pred Cccc----CCChhhhccccccccCCCCCHHHHHHHHHHHHHhCccc-----chhh---HHHHHHHHHHhcCC-CCCeeec
Confidence 2111 001111 0011477899999999998886311 1133 37899999999999 9999532
Q ss_pred ccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCC-
Q 006042 439 ERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWG- 517 (663)
Q Consensus 439 ~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg- 517 (663)
.. ++ ..++.-|..++.++..++... ...++++++||++.|+.||+|....+
T Consensus 165 ~~---------------wG-----e~DirftY~Al~~l~llg~~~--------~~~v~ka~~fL~scQn~DGGfGe~p~~ 216 (377)
T 1n4q_B 165 PE---------------GS-----ENDMRFVYCASCICYMLNNWS--------GMDMKKAISYIRRSMSYDNGLAQGAGL 216 (377)
T ss_dssp TT---------------CC-----CCBHHHHHHHHHHHHHTTCGG--------GSCHHHHHHHHHHTBCTTSSBBSSTTS
T ss_pred cC---------------CC-----cchhHHHHHHHHHHHHhcCCC--------hHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 10 00 012333555566666555421 23589999999999999999987554
Q ss_pred CcchhHHHHHHHHHHHcCCCcCC--hHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHH
Q 006042 518 ICFIYGTCFALGGLQVAGKTYNN--CLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLIS 595 (663)
Q Consensus 518 ~~~~Y~T~~aL~aL~~~g~~~~~--~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ 595 (663)
..+.-.|++|+.+|..+|..... ...++|+++||+++| +|||.+.+ +...++..+.|++-+|..
T Consensus 217 ESh~g~T~cAlaaL~llg~~~~~~~~~~~~rli~wL~~rQ--~gGf~GR~------------nK~~D~CYSfWv~~~l~i 282 (377)
T 1n4q_B 217 ESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQ--QNGYHGRP------------NKPVDTCYSFWVGATLKL 282 (377)
T ss_dssp CBCHHHHHHHHHHHHHHTCHHHHSCHHHHHHHHHHHHTTB--SSSBCSST------------TSCCCTTHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHhcCcccccchhhHHHHHHHHHhcC--CCCcCCCC------------CcchhHHHHHHHHHHHHH
Confidence 34445688899999988865210 127899999999999 89998764 234566788999998888
Q ss_pred cCCCCCCcHHHHHHHHHHHhcCcc-CCCCCCCccccccccccccccCCccchHHHHHHHHH
Q 006042 596 AGQADRDPTPIHRGVKLLINSQLE-NGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEY 655 (663)
Q Consensus 596 ag~~~~~~~~v~r~i~~L~~~Q~~-dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y 655 (663)
.+...- ...++..+||+++|.+ +|||.... |..| ..|-++|.|-+|+..
T Consensus 283 L~~~~~--~d~~~l~~fil~cQ~~~~GGf~~~p--~~~~-------D~~HT~~~LagLsl~ 332 (377)
T 1n4q_B 283 LKIFQY--TNFEKNRNYILSTQDRLVGGFAKWP--DSHP-------DALHAYFGICGLSLM 332 (377)
T ss_dssp TTCGGG--SCHHHHHHHHHTTBCTTTCSBCSST--TSCC-------BHHHHHHHHHHHHHT
T ss_pred hCCccc--cCHHHHHHHHHHHcCCCCCCcCCCC--CCCC-------CHHHHHHHHHHHHhc
Confidence 776431 1367889999999998 89987643 2222 223345777777653
No 17
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=99.69 E-value=6.1e-16 Score=168.41 Aligned_cols=223 Identities=12% Similarity=0.059 Sum_probs=151.9
Q ss_pred HHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCC
Q 006042 293 FKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSK 372 (663)
Q Consensus 293 ~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~ 372 (663)
..+|++++.+.+-.-+... ..-..+..|-.-+++.+|.-.|..-+ ....+++++||.+.|+.+ |+|.
T Consensus 63 ~~~Hi~yl~~~L~~LP~~y-~~~Dasr~wl~Yw~l~aL~LLg~~ld-~~~~~~~I~~Ils~Q~~d---GGFg-------- 129 (520)
T 3q7a_B 63 KQEHTQFLASSFFQLPGKF-VSLDASRPWLVFWTVHSLDLLGVALD-QGTKDRVVSTLLHFLSPK---GGFG-------- 129 (520)
T ss_dssp HHHHHHHHHHHHSCBCGGG-GGGGGGHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHTTBCTT---SSBC--------
T ss_pred HHHHHHHHHHHhhhCChhh-hhcccchHHHHHHHHHHHHHhCCCCC-hHHHHHHHHHHHHHcCCC---CCCC--------
Confidence 6799999998863222211 11225677889999999988884433 356889999999999865 5543
Q ss_pred CcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHH--HHHHHHHHHhhccccCCCccccccCCchhhhhhc
Q 006042 373 GAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPER--LYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWL 450 (663)
Q Consensus 373 GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~--i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~ 450 (663)
|++. ....|.+.+|..||++|..++...++ .....-. ++++++||.++|++ ||||.... |
T Consensus 130 -g~p~---~~~~~hla~TysAV~aL~ilg~~~p~---~~~~~Id~~r~k~v~fL~slQ~~-DGSF~g~~------w---- 191 (520)
T 3q7a_B 130 -GGPA---NSQIPHLLPTYASVCSLAIAGNDSST---GGWKDLAAARQSIYEFFMRCKRP-DGGFVVCE------G---- 191 (520)
T ss_dssp -SSCT---TTSCCCHHHHHHHHHHHHHHCBSSTT---SBHHHHHHTHHHHHHHHHHHBCT-TSCBBSST------T----
T ss_pred -CCCC---CCCCCcHHHHHHHHHHHHHhCccccc---hhhhhhhhHHHHHHHHHHHHhCC-CCCEecCC------C----
Confidence 1111 13457889999999999998753210 1111122 67899999999999 99995321 1
Q ss_pred CcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccC---------------
Q 006042 451 NPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGN--------------- 515 (663)
Q Consensus 451 ~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~--------------- 515 (663)
+ ..++.-|..++.+|..++... ...++++++||+++|+.||+|...
T Consensus 192 ------G-----e~Dir~TY~Al~~L~lLg~~~--------~~~v~kav~fI~scQn~DGGfGe~s~~~~~~~~~~~~~~ 252 (520)
T 3q7a_B 192 ------G-----EVDVRGTYCLLVVATLLDIIT--------PELLHNVDKFVSACQTYEGGFACASFPFPSVVPSTSAFP 252 (520)
T ss_dssp ------C-----CBCHHHHHHHHHHHHHHTCCC--------HHHHTTHHHHHHTTBCTTSSBCSCEEEEC----------
T ss_pred ------C-----CchHHHHHHHHHHHHHcCCCC--------hHHHHHHHHHHHHhcCCCCCccCcccccccccccccccc
Confidence 0 013344666666666665421 347899999999999999999871
Q ss_pred ---------CCCcchhHHHHHHHHHHHcCCCcC----ChHHHHHHHHHHHhhcC---CCCCccCCC
Q 006042 516 ---------WGICFIYGTCFALGGLQVAGKTYN----NCLAIRRAVDFLLNAQS---DDGGWGESY 565 (663)
Q Consensus 516 ---------wg~~~~Y~T~~aL~aL~~~g~~~~----~~~~i~ra~~~Ll~~Q~---~DGgWg~~~ 565 (663)
.+..+.-.|++||.+|..++.... ....+++.++||.++|. ++|||.+..
T Consensus 253 ~~rp~~~~Pg~EaHgGyTfCalAaL~lL~~l~~~~~~~~~d~~~l~~WL~~RQ~~~~e~GGF~GR~ 318 (520)
T 3q7a_B 253 TSEPSCRVSMAEAHGGYTSCSLNSHFLLTSVPLPSFPLSIDANAALRWTVLQQGEPIEGGGFRGRT 318 (520)
T ss_dssp --CCSEEEECSCCCHHHHHHHHHHHHHHHTSCCTTCSCCCCHHHHHHHHHHTBCCGGGTTCBBSST
T ss_pred ccccccCCCCCccchhHHHHHHHHHHHhccccccccccccCHHHHHHHHHHhCCcccCCCcccCCC
Confidence 233444457778888888876310 13457899999999996 469998775
No 18
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=99.67 E-value=1.4e-15 Score=157.06 Aligned_cols=218 Identities=17% Similarity=0.118 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHcCC----CC----chHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHH
Q 006042 322 DTALGLQALMACNI----AD----EVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEG 393 (663)
Q Consensus 322 dTal~~~AL~~ag~----~~----~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~a 393 (663)
-+.++...|...+. .+ +....|++++++++..|..+ |+|.. |. ...++.+.||++
T Consensus 11 P~~~~~~yL~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~d---Ggf~~-----------f~---~~~~s~wlTa~v 73 (277)
T 1qqf_A 11 PTVIAVHYLDQTEQWEKFGLEKRQEALELIKKGYTQQLAFKQPI---SAYAA-----------FN---NRPPSTWLTAYV 73 (277)
T ss_dssp HHHHHHHHHHHHTCHHHHCGGGHHHHHHHHHHHHHHHHTTBCTT---SCBCS-----------ST---TSCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCChhHHHHHHHHHHHHHHHHHHhcCCC---CCccc-----------cC---CCCccHHHHHHH
Confidence 44555556655542 11 23567899999999999876 66542 11 123578999999
Q ss_pred HHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHh-hccccCCCccccccCCchhhhhhcCccccccccccc-ccccCcHHH
Q 006042 394 LKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLS-LQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVE-HTYVECTAS 471 (663)
Q Consensus 394 l~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~-~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d-~~~~~~Ta~ 471 (663)
+++|..+.+. . .++++.++++++||.+ .|++ ||+|.....-.... ..+..... .+.+..|++
T Consensus 74 ~~~l~~a~~~-----~-~v~~~~i~~a~~~L~~~~Q~~-dG~f~~~~~~~~~~---------~~g~~~~~~~~~~~lta~ 137 (277)
T 1qqf_A 74 SRVFSLAANL-----I-AIDSQVLCGAVKWLILEKQKP-DGVFQEDGPVIHQE---------MIGGFRNTKEADVSLTAF 137 (277)
T ss_dssp HHHHHHHTTT-----S-CCCHHHHHHHHHHHHHHHBCT-TSCBCCSSCCSCGG---------GGGGGGSCTTHHHHHHHH
T ss_pred HHHHHHHhhc-----C-CCCHHHHHHHHHHHHHhccCC-CCCccCCccccchh---------hcCCCCCCccCccchHHH
Confidence 9999988642 1 3678899999999996 9999 99996432111000 00000000 123567999
Q ss_pred HHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhccc---------------------------------CCCcccCCCC
Q 006042 472 AIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTA---------------------------------DGSWYGNWGI 518 (663)
Q Consensus 472 ~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~---------------------------------DGsw~g~wg~ 518 (663)
+|.+|...+....+ ......+.|++|++||.++|++ ||.|.+.++.
T Consensus 138 vl~aL~~~~~~~~~-~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAl~l~g~~~~~~l~~l~~~~~~~~~w~~~~~ 216 (277)
T 1qqf_A 138 VLIALQEARDICEG-QVNSLPGSINKAGEYLEASYLNLQRPYTVAIAGYALALMNKLEEPYLTKFLNTAKDRNRWEEPGQ 216 (277)
T ss_dssp HHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTCCCTTHHHHHHHHSBTTTBCCCTTC
T ss_pred HHHHHHhhhhcccc-CCCchHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999887542100 0012457899999999998764 4444333332
Q ss_pred c--chhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHc
Q 006042 519 C--FIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISA 596 (663)
Q Consensus 519 ~--~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~a 596 (663)
. .++.|+++|.+|...+.. +.+.+.++||.++|++||||+.+ -.|+.||.||...
T Consensus 217 ~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~sT-------------------q~T~~aL~AL~~y 273 (277)
T 1qqf_A 217 QLYNVEATSYALLALLLLKDF----DSVPPVVRWLNDERYYGGGYGST-------------------QATFMVFQALAQY 273 (277)
T ss_dssp HHHHHHHHHHHHHHHHHTTCT----TSHHHHHHHHHHCCCCTTSTTCH-------------------HHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeecc-------------------hHHHHHHHHHHHH
Confidence 2 567899999999998753 46899999999999999999854 3799999999853
No 19
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=99.65 E-value=2.3e-15 Score=161.58 Aligned_cols=238 Identities=20% Similarity=0.150 Sum_probs=154.8
Q ss_pred hheecCCCceeecCCCCchHHHHHHHHHHHcCC----CC----chHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCc
Q 006042 303 YIWLGEDGMKVQTFGSQTWDTALGLQALMACNI----AD----EVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGA 374 (663)
Q Consensus 303 ~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~----~~----~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~Gg 374 (663)
+|...+.|..-|. .+..+-..++..+|.+.+. .+ +....|+++++||+..|..+ |+|..
T Consensus 46 ~L~~~P~Gc~EQ~-~s~~~P~~~v~~~l~~~~~w~~~~~~~~~~~~~~i~~g~~~ll~~Q~~d---Ggf~~--------- 112 (367)
T 1hzf_A 46 SLLRLPRGCGEQT-MIYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKAD---GSYAA--------- 112 (367)
T ss_dssp TTCCCCCSSHHHH-HHHHHHHHHHHHHHHHTTCSTTSCTTHHHHHHHHHHHHHHHHHTTBCTT---SCBCS---------
T ss_pred HHHhCCCCCHHHH-HHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHHHHHhccCCC---CCeec---------
Confidence 3333455543332 2444556677778776553 22 24567999999999999876 55531
Q ss_pred ccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCccc
Q 006042 375 WTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVE 454 (663)
Q Consensus 375 W~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e 454 (663)
|. ...++.+.|++++.+|..+++. ..++.+.+++|++||.+.|++ ||+|......... .+
T Consensus 113 --~~---~~~~~~~lTa~v~~~l~~a~~~------~~v~~~~i~~a~~~L~~~Q~~-dG~~~~~~~~~~~----~~---- 172 (367)
T 1hzf_A 113 --WL---SRDSSTWLTAFVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQA-DGSFQDPCPVLDR----SM---- 172 (367)
T ss_dssp --ST---TSCCCHHHHHHHHHHHHHHGGG------TCCCHHHHHHHHHHHGGGBCT-TSCBCCSSCCSCG----GG----
T ss_pred --cC---CCCCcHHHHHHHHHHHHHHHHH------hCCCHHHHHHHHHHHHHhhcc-CCCcccccccccc----cc----
Confidence 11 1123668899999999988642 135678999999999999999 9999532111000 00
Q ss_pred ccccccccccccCcHHHHHHHHHHhhhhCCCcc----hHHHHHHHHHHHHHHHHh--cc---------------------
Q 006042 455 FLEDLIVEHTYVECTASAIEAFMLFKKLYPHHR----KKEIENFIVKAVHYIEDE--QT--------------------- 507 (663)
Q Consensus 455 ~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~----~~~~~~~i~rav~~L~~~--Q~--------------------- 507 (663)
-+....+.+.+..|+++|.+|...+...++.. .....+.|+||++||.++ ++
T Consensus 173 -~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~~~~~~~~y~~Al~ayAL~l~~~~~ 251 (367)
T 1hzf_A 173 -QGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKASAGLLGAHAAAITAYALTLTKAPA 251 (367)
T ss_dssp -GGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCH
T ss_pred -cCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHhcCCcH
Confidence 00001123457789999999987654222100 023456899999999766 21
Q ss_pred ---------------cCCC--cccCC---------------------C--C-cchhHHHHHHHHHHHcCCCcCChHHHHH
Q 006042 508 ---------------ADGS--WYGNW---------------------G--I-CFIYGTCFALGGLQVAGKTYNNCLAIRR 546 (663)
Q Consensus 508 ---------------~DGs--w~g~w---------------------g--~-~~~Y~T~~aL~aL~~~g~~~~~~~~i~r 546 (663)
.+|. |.+.+ + . ..+..|++||.+|...+.. .+.+.+
T Consensus 252 ~~~~~~~~~L~~~a~~~~~~~~W~~~~~s~~~~~~~~~~~~~~~~~~~~~~s~~vE~TAyaLLall~~~~~---~~~~~~ 328 (367)
T 1hzf_A 252 DLRGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK---AEMADQ 328 (367)
T ss_dssp HHHHHHHHHHHTTCEECSSCEECC------------------------CCCHHHHHHHHHHHHHHHHHTCS---SHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCCccCCCCCcccccccccccccccccccCCCccchhHHHHHHHHHHHhccCc---hhhhHH
Confidence 1222 22211 1 1 1456899999999876542 478999
Q ss_pred HHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHc
Q 006042 547 AVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISA 596 (663)
Q Consensus 547 a~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~a 596 (663)
.++||.++||.+|||+.+ -.|+.||.||...
T Consensus 329 iv~WL~~qrn~~Ggw~sT-------------------qdTvvAL~AL~~y 359 (367)
T 1hzf_A 329 ASAWLTRQGSFQGGFRST-------------------QDTVIALDALSAY 359 (367)
T ss_dssp HHHHHHHHTTSTTCSCSH-------------------HHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCCcccH-------------------HHHHHHHHHHHHH
Confidence 999999999999999854 2799999999864
No 20
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.65 E-value=1.7e-15 Score=187.59 Aligned_cols=272 Identities=18% Similarity=0.186 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHcCCC-Cc----hHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHH
Q 006042 322 DTALGLQALMACNIA-DE----VESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKC 396 (663)
Q Consensus 322 dTal~~~AL~~ag~~-~~----~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 396 (663)
-..++...|...+.. ++ ....|+++++||+..|..+ |+|.. |+-.+ ++..++.|.||+++.+
T Consensus 959 P~l~~~~yL~~t~q~~~~~~~~a~~~i~~g~~~ll~~q~~d---Ggf~~---------f~~~~-~~~~~s~wlTAyv~~~ 1025 (1451)
T 4acq_A 959 PNIYVLDYLNETQQLTPEIKSKAIGYLNTGYQRQLNYKHYD---GSYST---------FGERY-GRNQGNTWLTAFVLKT 1025 (1451)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHGGGBCTT---SCBCS---------STTGG-GCCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhhcCCC---CCeee---------ccCCC-CCCCCchhHHHHHHHH
Confidence 344555556666643 22 2345789999999999876 55542 11100 0134678999999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCccccccccccc--ccccCcHHHHHH
Q 006042 397 VLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVE--HTYVECTASAIE 474 (663)
Q Consensus 397 L~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d--~~~~~~Ta~~L~ 474 (663)
|..+++. ..+++..+++|++||.+.|++ ||+|..... + +.+.|.+ ...+..||++|.
T Consensus 1026 l~~a~~~------~~v~~~~l~~a~~wL~~~Q~~-dG~f~~~g~-----~---------~~~~m~gg~~~~~~lTAyvl~ 1084 (1451)
T 4acq_A 1026 FAQARAY------IFIDEAHITQALIWLSQRQKD-NGCFRSSGS-----L---------LNNAIKGGVEDEVTLSAYITI 1084 (1451)
T ss_dssp HHHHTTT------SCCCTHHHHHHHHHHHHTEET-TTEECCCCC-----C---------SCGGGCCSCSCHHHHHHHHHH
T ss_pred HHHhhhh------cccCHHHHHHHHHHHHhhccc-CCcccccCc-----c---------cchhhcCCCCCCccchHHHHH
Confidence 9988642 135778999999999999999 999953221 1 2222222 134568999999
Q ss_pred HHHHhhhhCCCcchHHHHHHHHHHHHHHHHhccc--CCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHH
Q 006042 475 AFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTA--DGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLL 552 (663)
Q Consensus 475 aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~--DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll 552 (663)
+|...+.. . .++.|++|++||++.... +|. .....|..+....||+.+|.. +..+++++-|.
T Consensus 1085 aL~~~g~~--~-----~~~~i~~A~~~L~~~~~~~~~~~-----~~~~~y~~AllAyAlal~g~~----~~~~~~l~~L~ 1148 (1451)
T 4acq_A 1085 ALLEIPLT--V-----THPVVRNALFCLESAWKTAQEGD-----HGSHVYTKALLAYAFALAGNQ----DKRKEVLKSLN 1148 (1451)
T ss_dssp HHHHTTCC--T-----TCHHHHHHHHHHHHHHHHHTSSC-----SSSTHHHHHHHHHHHHHHTCH----HHHHHHHHHHH
T ss_pred HHHHcCCC--C-----CCHHHHHHHHHHHHhhhhccccc-----ccCChHHHHHHHHHHHhcCCh----hHHHHHHHHHH
Confidence 99988742 1 236899999999876321 111 123578888888999998863 44556788888
Q ss_pred hhcCCCCC---ccCCCcCCCCc--cccCCCCCCCcHHHHHHHHHHHHHcCCCC--CCcHHHHHHHHHHHhcCccCCCCCC
Q 006042 553 NAQSDDGG---WGESYKSCPNK--IYTPLEGKRSTVVHTALAVLSLISAGQAD--RDPTPIHRGVKLLINSQLENGDFPQ 625 (663)
Q Consensus 553 ~~Q~~DGg---Wg~~~~s~~~~--~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~--~~~~~v~r~i~~L~~~Q~~dG~w~~ 625 (663)
+....+|+ |++....+... -|.+ ......++.|||||+||+.++... .+.+.+.+.++||.++|+.+|+|..
T Consensus 1149 ~~a~~~~~~~~W~~~~~~~~~~~~~~~~-~~~s~~vE~TayaLLall~~~~~~~~~d~~~a~~iv~WL~~qr~~~Ggf~S 1227 (1451)
T 4acq_A 1149 EEAVKKDNSVHWERPQKPKAPVGHFYEP-QAPSAEVEMTSYVLLAYLTAQPAPTSEDLTSATNIVKWITKQQNAQGGFSS 1227 (1451)
T ss_dssp HHCCBCSSCBCCCCCCCSSSCSSSTTCC-CTTGGGGTHHHHHHHHHHCCSSCCCHHHHHHHHTTHHHHTTCCCTTSCCSS
T ss_pred HHhhccCCceecCCCCCCcccccccccc-CCchHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHcCCCCCCccc
Confidence 87777776 87654322111 1211 112356789999999999886320 0123578899999999999999987
Q ss_pred CccccccccccccccCCccchHHHHHHHHHHHhCC
Q 006042 626 QEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVP 660 (663)
Q Consensus 626 ~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~~~ 660 (663)
.+ .+++.|.||++|..+..
T Consensus 1228 TQ----------------dTv~aL~ALa~Y~~~~~ 1246 (1451)
T 4acq_A 1228 TQ----------------DTVVALHALSKYGAATF 1246 (1451)
T ss_dssp HH----------------HHHHHHHHHHHHHHHHC
T ss_pred HH----------------HHHHHHHHHHHHHHhcC
Confidence 64 67899999999988643
No 21
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.65 E-value=1.7e-15 Score=180.72 Aligned_cols=200 Identities=21% Similarity=0.200 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHH
Q 006042 415 ERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENF 494 (663)
Q Consensus 415 ~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~ 494 (663)
+.+++++++++++|++ ||||++|+... ++...|++|+.+|..+.+... ...+.
T Consensus 299 ~~i~~g~~rll~~Q~~-DGsfs~w~~~~---------------------~s~wlTAyv~~~l~~a~~~~~-----v~~~~ 351 (915)
T 2hr0_B 299 ELIKKGYTQQLAFRQP-SSAFAAFVKRA---------------------PSTWLTAYVVKVFSLAVNLIA-----IDSQV 351 (915)
T ss_dssp HHHHHHHHHHGGGCCT-TTCCBSSSSSC---------------------BCHHHHHHHHHHHHTTTTTSC-----CCHHH
T ss_pred HHHHHHHHHHHHhhcC-CCCccccCCCC---------------------CcceehHHHHHHHHHhhhcCC-----CCHHH
Confidence 3678899999999999 99999987432 356679999999998864321 12468
Q ss_pred HHHHHHHHHH-hcccCCCcccCCCCc--------------chhHHHHHHHHHHHcCCC-----cCChHHHHHHHHHHHhh
Q 006042 495 IVKAVHYIED-EQTADGSWYGNWGIC--------------FIYGTCFALGGLQVAGKT-----YNNCLAIRRAVDFLLNA 554 (663)
Q Consensus 495 i~rav~~L~~-~Q~~DGsw~g~wg~~--------------~~Y~T~~aL~aL~~~g~~-----~~~~~~i~ra~~~Ll~~ 554 (663)
+++|++||.+ .|++||+|.+.|++. ..+.|+++|.+|...|.. ...++.+++|++||.++
T Consensus 352 i~~al~~L~~~~Q~~dG~f~~~~~~~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~~~~~~~~~i~~A~~yL~~~ 431 (915)
T 2hr0_B 352 LCGAVKWLILEKQKPDGVFQEDAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEAN 431 (915)
T ss_dssp HHHHHHHHHHHHBCTTSCBCCCSCCSSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCccccCccccchhhcCCccCccccccccHHHHHHHHHhcccccccCcccchHHHHHHHHHHHHh
Confidence 9999999995 999999998766431 255689999999988653 12467899999999998
Q ss_pred cCC-CCCccCCCc-------------------CCC-CccccCCCCC-CCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q 006042 555 QSD-DGGWGESYK-------------------SCP-NKIYTPLEGK-RSTVVHTALAVLSLISAGQADRDPTPIHRGVKL 612 (663)
Q Consensus 555 Q~~-DGgWg~~~~-------------------s~~-~~~y~~~~g~-~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~ 612 (663)
++. +++|+.... ... ...|..-.+. .+++..|||||++|+.++.. +.+.++++|
T Consensus 432 ~~~~~~~y~~a~layAL~l~g~~a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~----~~~~~~v~w 507 (915)
T 2hr0_B 432 YMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPVVRW 507 (915)
T ss_dssp GGGCCSHHHHHHHHHHHHTTTCCCHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT----TTHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHcCChHHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh----hhHHHHHHH
Confidence 765 221211000 000 1111110111 13677899999999998764 258899999
Q ss_pred HHhcCccCCCCCCCccccccccccccccCCccchHHHHHHHHHHHhCCC
Q 006042 613 LINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVPL 661 (663)
Q Consensus 613 L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~~~~ 661 (663)
|+++|+.+|+|... +.+++.|+||+.|..+...
T Consensus 508 L~~qq~~~Ggw~ST----------------QdT~~Al~AL~~y~~~~~~ 540 (915)
T 2hr0_B 508 LNEQRYYGGGYGST----------------QATFMVFQALAQYQKDAPD 540 (915)
T ss_dssp HHTCCCSSSSCCSH----------------HHHHHHHHHHHHHHHHCCC
T ss_pred HHhcccCCCCccch----------------hhHHHHHHHHHHHHHHcCc
Confidence 99999999999864 3577999999999876543
No 22
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=99.65 E-value=1.9e-15 Score=158.53 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHHcCC----CC----chHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHH
Q 006042 321 WDTALGLQALMACNI----AD----EVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAE 392 (663)
Q Consensus 321 wdTal~~~AL~~ag~----~~----~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 392 (663)
+-+.++...|...+. .+ +....|++++++++..|..+ |+|.. |. ...++.+.||+
T Consensus 26 ~P~~~~~~yl~~~~~~~~~~~~~~~~~~~~i~~g~~~~l~~q~~d---Ggf~~-----------f~---~~~~s~wlTa~ 88 (310)
T 2wy7_A 26 TPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPS---SAFAA-----------FV---KRAPSTWLTAY 88 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHCTTHHHHHHHHHHHHHHHHHTTBCTT---SCBCS-----------ST---TSCCCHHHHHH
T ss_pred hHHHHHHHHHHHhhccccCChhHHHHHHHHHHHHHHHHHHhcCCC---CCccc-----------CC---CCCccHHHHHH
Confidence 445556666666552 11 23467889999999999876 66542 11 12357899999
Q ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHh-hccccCCCccccccCCchhhhhhcCccccccccccc-ccccCcHH
Q 006042 393 GLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLS-LQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVE-HTYVECTA 470 (663)
Q Consensus 393 al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~-~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d-~~~~~~Ta 470 (663)
|+++|..+.+. . .++++.++++++||.+ .|++ ||+|........... .+..... .+.+..|+
T Consensus 89 v~~~l~~a~~~-----~-~v~~~~i~~a~~~L~~~~Q~~-dGsf~~~~~~~~~~~---------~g~~~~~~~~~~~~ta 152 (310)
T 2wy7_A 89 VVKVFSLAVNL-----I-AIDSQVLCGAVKWLILEKQKP-DGVFQEDAPVIHQEM---------IGGLRNNNEKDMALTA 152 (310)
T ss_dssp HHHHHHHHTTT-----S-CCCHHHHHHHHHHHHHHHBCT-TSCBCCSSCCSCGGG---------GGGGTTCSCHHHHHHH
T ss_pred HHHHHHHHHhc-----C-CCCHHHHHHHHHHHHHhhcCC-CCccccCCCccCHhh---------cCCcccccccccchHH
Confidence 99999988642 1 3678899999999996 9999 999964321110000 0000000 12356799
Q ss_pred HHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhccc---------------------------------CCCcccCCC
Q 006042 471 SAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTA---------------------------------DGSWYGNWG 517 (663)
Q Consensus 471 ~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~---------------------------------DGsw~g~wg 517 (663)
+++.+|...+....+ ......+.|++|++||.++|++ +|.|...++
T Consensus 153 ~vl~aL~~~~~~~~~-~~~~~~~~i~~A~~~L~~~~~~~~~~y~~a~~ayAL~l~g~~~~~~l~~l~~~~~~~~~w~~~~ 231 (310)
T 2wy7_A 153 FVLISLQEAKDICEE-QVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPG 231 (310)
T ss_dssp HHHHHHHHHHHHHTT-TCTTHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHSBTTTBCCCSS
T ss_pred HHHHHHHhccccccc-CCcchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhccCCCCCCCCC
Confidence 999999887542100 0012457899999999998774 333333233
Q ss_pred Cc--chhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHH
Q 006042 518 IC--FIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLIS 595 (663)
Q Consensus 518 ~~--~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ 595 (663)
.. .+..|++||.+|...+.. +.+.+.++||.++|++||||..+ -.|+.||.||..
T Consensus 232 ~~~~~ve~Ta~aLlal~~~~~~----~~~~~~v~wL~~qq~~~Ggw~sT-------------------q~T~~aL~AL~~ 288 (310)
T 2wy7_A 232 KQLYNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGST-------------------QATFMVFQALAQ 288 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCT----TTHHHHHHHHHHTTCCCCSTTCH-------------------HHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHhcCCh----hhHHHHHHHHHHccCCCCCeecc-------------------HHHHHHHHHHHH
Confidence 22 567899999999998753 46899999999999999999854 378999999986
Q ss_pred c
Q 006042 596 A 596 (663)
Q Consensus 596 a 596 (663)
.
T Consensus 289 y 289 (310)
T 2wy7_A 289 Y 289 (310)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=8.9e-16 Score=190.33 Aligned_cols=196 Identities=18% Similarity=0.229 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHH
Q 006042 415 ERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENF 494 (663)
Q Consensus 415 ~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~ 494 (663)
+.+++++++|+++|++ ||||++|+..+ ++...|++|+.+|..+.+..-. ..++.
T Consensus 872 ~~i~~g~~rll~~q~~-dGgf~~f~~~~---------------------~s~~lTa~v~~~l~~a~~~~~~----v~~~~ 925 (1325)
T 2pn5_A 872 NLLRQGYQNQMRYRQT-DGSFGLWETTN---------------------GSVFLTAFVGTSMQTAVKYISD----IDAAM 925 (1325)
T ss_dssp HHHHHHHHHHGGGBCT-TSCBCSSSSSC---------------------CCHHHHHHHHHHHHHHTTTCSC----SCHHH
T ss_pred HHHHHHHHHHHhcCCC-CCCeeccCCCC---------------------CCeeehHHHHHHHHHHHhhEEc----CCHHH
Confidence 4578889999999999 99999987533 4566799999999998653110 11468
Q ss_pred HHHHHHHHHHhcccCCCcccCCCCc----------chhHHHHHHHHHHHcCCCc-CChHHHHHHHHHHHhhcCC-CCCcc
Q 006042 495 IVKAVHYIEDEQTADGSWYGNWGIC----------FIYGTCFALGGLQVAGKTY-NNCLAIRRAVDFLLNAQSD-DGGWG 562 (663)
Q Consensus 495 i~rav~~L~~~Q~~DGsw~g~wg~~----------~~Y~T~~aL~aL~~~g~~~-~~~~~i~ra~~~Ll~~Q~~-DGgWg 562 (663)
++++++||.+.|++||+|.+.|... ..+.|+++|.+|...|... .....+++|++||.++|+. +++|+
T Consensus 926 l~~a~~~L~~~q~~dG~f~~~~~~~~~~~~g~~~~~~~~tayvl~aL~~~g~~~~~~~~~i~~a~~~L~~~~~~~~~~~~ 1005 (1325)
T 2pn5_A 926 VEKALDWLASKQHFSGRFDKAGAEYHKEMQGGLRNGVALTSYVLMALLENDIAKAKHAEVIQKGMTYLSNQFGSINNAYD 1005 (1325)
T ss_dssp HHHHHHHHHHTCCTTSCCCCCSCCSCHHHHCCSSTTHHHHHHHHHHHHTCHHHHHHTHHHHHHHHHHHHHHGGGCCCHHH
T ss_pred HHHHHHHHHhhhccCCCccccccccChhhcCcccCCccccHHHHHHHhhCcccccccHHHHHHHHHHHHHhhcccCCHHH
Confidence 9999999999999999998765422 2345788888888766431 1246799999999999887 88887
Q ss_pred CCCcCCC--------------------------CccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc
Q 006042 563 ESYKSCP--------------------------NKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINS 616 (663)
Q Consensus 563 ~~~~s~~--------------------------~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~ 616 (663)
....++. ...|. ...|++.+|||||+||+.++.. +.+.++++||+++
T Consensus 1006 ~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w---~~~s~ve~tA~aLlall~~~~~----~~~~~~v~wL~~q 1078 (1325)
T 2pn5_A 1006 LSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFW---NTTNPIETTAYALLSFVMAEKY----TDGIPVMNWLVNQ 1078 (1325)
T ss_dssp HHHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEEC---CSSSHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccC---CCCCchHHHHHHHHHHhhhccc----hhhHHHHHHHHhc
Confidence 6532110 01121 1146788999999999998642 4688999999999
Q ss_pred CccCCCCCCCccccccccccccccCCccchHHHHHHHHHHHhC
Q 006042 617 QLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRV 659 (663)
Q Consensus 617 Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~~ 659 (663)
|+.+|+|.+.+ .++++|+||++|.++.
T Consensus 1079 ~~~~g~w~sTq----------------~T~~aL~AL~~y~~~~ 1105 (1325)
T 2pn5_A 1079 RYVTGSFPSTQ----------------DTFVGLKALTKMAEKI 1105 (1325)
T ss_dssp CCTTSSCSSHH----------------HHHHHHHHHHHHHHHH
T ss_pred cCCCCCccchH----------------HHHHHHHHHHHHHHHc
Confidence 99999998653 5679999999998654
No 24
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=99.59 E-value=1.3e-14 Score=153.35 Aligned_cols=207 Identities=16% Similarity=0.169 Sum_probs=130.8
Q ss_pred HHHHHHHHHHhhccccCCCccccccCCchhh--hhh-c---C--c----ccccc-----c-ccccccccCcHHHHHHHHH
Q 006042 416 RLYDAVNFLLSLQDEKTGGLAVWERAGASLL--LEW-L---N--P----VEFLE-----D-LIVEHTYVECTASAIEAFM 477 (663)
Q Consensus 416 ~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~--l~~-~---~--~----~e~f~-----~-~~~d~~~~~~Ta~~L~aL~ 477 (663)
..+++.+.|+..|.+ +|||...-. ..... -+. . + . ...|+ + ........+.|+.+|++|.
T Consensus 82 ~A~~iAd~ll~~Q~~-~GGW~kn~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~DnddTa~vl~aL~ 159 (408)
T 1r76_A 82 AARHVADVIVSFQTP-AGGWGKNQP-RDGALRLPGQHYTGENVAKVKSGSNDLDAARDRDWHYVGTIDNDATVTEIRFLA 159 (408)
T ss_dssp HHHHHHHHHHHHCCT-TSCCCSSCC-SSSCCCCTTCCSSCCCCCCCC---------CCCCCSSSSBCGGGTTHHHHHHHH
T ss_pred HHHHHHHHHHHcccc-CCCCCCccc-cccccchhhhhcccccccccccccccchhhcccccCCCCCCCCchHHHHHHHHH
Confidence 458889999999999 999964211 11100 000 0 0 0 00010 0 0122234578999999999
Q ss_pred HhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchh---------HHHHHHHHHHHcCCC-----------
Q 006042 478 LFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIY---------GTCFALGGLQVAGKT----------- 537 (663)
Q Consensus 478 ~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y---------~T~~aL~aL~~~g~~----------- 537 (663)
.+.........+.+.+++.||++||++.|.+||+|...+-.+..| .|+.+|..|..++..
T Consensus 160 rv~~~~t~~~~~~y~~Ai~Rgl~wlL~mQ~~nGGWpqFdpdn~~y~~~IpFnDDvt~rvle~L~~~~~~~~~~~~~~~~~ 239 (408)
T 1r76_A 160 QVVSQLAPEEAAPYRDAALKGIEYLLASQFPNGGWPQVWPLEGGYHDAITYNDDALVHVAELLSDIAAGRDGFGFVPPAI 239 (408)
T ss_dssp HHHHHSCGGGCHHHHHHHHHHHHHHHHHSCTTSCCBSBSSCCCGGGGSEECGGGHHHHHHHHHHHHHHTCTTCTTSCHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHccCCCCCCcCcCccccccccCCCcCcHHHHHHHHHHHHHHhccCcccccchhh
Confidence 876430100234578899999999999999999997654333222 588888888776551
Q ss_pred -cCChHHHHHHHHHHHhhcCC-CCCccCCCcCCCC-ccccCC-----CCCCCcHHHHHHHHHHHHHcCCCCC-CcHHHHH
Q 006042 538 -YNNCLAIRRAVDFLLNAQSD-DGGWGESYKSCPN-KIYTPL-----EGKRSTVVHTALAVLSLISAGQADR-DPTPIHR 608 (663)
Q Consensus 538 -~~~~~~i~ra~~~Ll~~Q~~-DGgWg~~~~s~~~-~~y~~~-----~g~~s~~~~Ta~ALlaL~~ag~~~~-~~~~v~r 608 (663)
....++++||++||++.|.+ ||.|. .+....+ .++.|. +...-+..+|+++|++|+....... ..++|++
T Consensus 240 ~~~~~~av~Rgi~~Ll~~Qe~~dGsw~-rWg~qY~ygT~~Pa~aRsYE~psLs~~esa~il~~LM~~~~~~~~~~~aI~~ 318 (408)
T 1r76_A 240 RTRALEATNAAIHCIVETQVVQDGKRL-GWGQQHDALTLRPTSARNFEPAALSSTESARILLFLMEIEAPSDAVKQAIRG 318 (408)
T ss_dssp HHHHHHHHHHHHHHHHHHSCEETTEEC-CCCSEECTTTCSBCCCSTTCCSCEEHHHHHHHHHHHTTSSSCCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcccCCccc-chhcccccccCcchhhhccCCccccHHHHHHHHHHHccCCCCCHHHHHHHHH
Confidence 02468999999999999999 99987 4432211 112110 1112346789999999998865321 1137999
Q ss_pred HHHHHHhcCccCCCCCC
Q 006042 609 GVKLLINSQLENGDFPQ 625 (663)
Q Consensus 609 ~i~~L~~~Q~~dG~w~~ 625 (663)
|++||.++|++||+|..
T Consensus 319 Av~WL~s~Q~~dg~w~~ 335 (408)
T 1r76_A 319 GVAWLNTSVIRDRAWVK 335 (408)
T ss_dssp HHHHHHHSCCCC-----
T ss_pred HHHHHHHhhcCCCceee
Confidence 99999999999999873
No 25
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.57 E-value=7.5e-14 Score=148.63 Aligned_cols=316 Identities=13% Similarity=0.067 Sum_probs=192.8
Q ss_pred HHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCC-CCCCccccCCCCC
Q 006042 293 FKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDN-PVGDYKGNFRHFS 371 (663)
Q Consensus 293 ~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~-~~G~~~~~~~~~~ 371 (663)
..||++++.+.+..-+... ..-..+..|-.-+++.+|.-.|..+-.....++.++||.++|..++ ..|+|..
T Consensus 6 ~~kHiky~~~~L~~Lp~~~-~s~D~~R~~l~Yw~l~~L~lLg~~~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g------ 78 (390)
T 3dra_B 6 INKHEKFFNRCLIGLPSTA-QSEDSNKLAIIYFCLHGLQLIQKFQFTNQELIYYRNFIINQFMIENNQIISFRS------ 78 (390)
T ss_dssp HHHHHHHHHHHHHCCCGGG-GGGTTCHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHEEECSSCEEECS------
T ss_pred HHHHHHHHHHHHHhCCcch-hhcchhhHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHhccccCCCCCcCC------
Confidence 6789999988654333221 1123678899999999998888652113446778999999987632 2233321
Q ss_pred CCcccCccCC--CCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhcc---ccCCCccccc--cCCch
Q 006042 372 KGAWTFSDQD--HGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQD---EKTGGLAVWE--RAGAS 444 (663)
Q Consensus 372 ~GgW~fs~~~--~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn---~~DGgw~~~~--~~~~~ 444 (663)
+=.+...+ ...|.+..|-.||.+|..++.. .-+.+++ ++.++||.++|+ ++||||.... ...++
T Consensus 79 --~~~~~~~g~~~~~~hl~~Ty~Al~~L~ilg~~----~~~~vdr---~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg 149 (390)
T 3dra_B 79 --THYFQKTNQKYDCPNLSSTLFALYNLLILKSP----YHTIINR---KKIMNFLCKCQVKDGINKGGFVPTLYYNEENG 149 (390)
T ss_dssp --SGGGGGSCTTTSCCBHHHHHHHHHHHHHTTCC----GGGTCCH---HHHHHHHHHHBCCSSTTTTCBCSEEEEETTTT
T ss_pred --CccCCCCCCccCcccHHHHHHHHHHHHHhCch----hhccccH---HHHHHHHHHHhCCCCCCCCceeeecccccccc
Confidence 10011111 1347888999999999888641 0012454 667999999998 4489997443 10000
Q ss_pred hhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHH--HHHHHHHHHHHHHhcccCCCcccCCC-Ccch
Q 006042 445 LLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEI--ENFIVKAVHYIEDEQTADGSWYGNWG-ICFI 521 (663)
Q Consensus 445 ~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~--~~~i~rav~~L~~~Q~~DGsw~g~wg-~~~~ 521 (663)
.+ +.++ ..|..+.+|...++..|.......++.+.+.. ...++++++||+++|+.||+|.+.-+ ..+.
T Consensus 150 ~~-------~~~g--e~D~R~~YcA~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~p~~EsH~ 220 (390)
T 3dra_B 150 DY-------KQYG--EPDLRVCYMALLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSSTIMDESHL 220 (390)
T ss_dssp EE-------EEES--CCCHHHHHHHHHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSSTTSCCCH
T ss_pred cc-------ccCC--cchHHHHHHHHHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCCCCccccc
Confidence 00 0011 12334444444443333222100000000000 12379999999999999999987543 4455
Q ss_pred hHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcC----------------------------CCCCccCCCcCCCCccc
Q 006042 522 YGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQS----------------------------DDGGWGESYKSCPNKIY 573 (663)
Q Consensus 522 Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~----------------------------~DGgWg~~~~s~~~~~y 573 (663)
-.|++||.+|..+|... ..+++.++||.++|. ++|||.+.+
T Consensus 221 G~TfCalaaL~lL~~~~---~d~~~l~~WL~~RQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGFnGR~-------- 289 (390)
T 3dra_B 221 GFTFCAIASLKLLNYPL---EKLKSTKEWLIHRQVDYPENLYPKDGNGDGNGNGDNYEYYRNIDIGGFNGRE-------- 289 (390)
T ss_dssp HHHHHHHHHHHHTTCCG---GGCHHHHHHHHTTBCCCCTTTCC------------CCTTCCGGGTTSBBSST--------
T ss_pred chhHHHHHHHHHhCccc---ccHHHHHHHHHHcCccccccccccccccccccccccccccccccCCCccCCC--------
Confidence 45788999999998862 467899999999997 468888764
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhc-Ccc-CCCCCCCccccccccccccccCCccchHHHHH
Q 006042 574 TPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINS-QLE-NGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRA 651 (663)
Q Consensus 574 ~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~-Q~~-dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~A 651 (663)
+...++..+.|++-+|...+....+....++..+||+++ |.+ .|||.... |..| ..|-++|.|-+
T Consensus 290 ----nKl~D~CYS~Wv~~sL~iL~~~~~~l~d~~~l~~yiL~c~Q~~~~GGf~d~P--g~~p-------D~yHT~~gLag 356 (390)
T 3dra_B 290 ----NKLSDTCYSWWCTGSLYNIDVNFIKLVDLNKAEDYLLNKTQNQLFGGFGRDP--DSTP-------DPMHSYLALAS 356 (390)
T ss_dssp ----TCCBCTHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHTTBCTTTCSBCSST--TSCC-------CHHHHHHHHHH
T ss_pred ----CCccchhHHHHHHHHHHHhccccccccCHHHHHHHHHHhccCCCCCCcCCCC--CCCC-------chHHHHHHHHH
Confidence 334667788899988887773100111367789999997 454 89987643 2222 23456788888
Q ss_pred HHHHHH
Q 006042 652 LAEYRK 657 (663)
Q Consensus 652 L~~y~~ 657 (663)
|+....
T Consensus 357 Lsl~~~ 362 (390)
T 3dra_B 357 LSLWNH 362 (390)
T ss_dssp HHHHHH
T ss_pred HHHcCC
Confidence 887643
No 26
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.50 E-value=1.8e-13 Score=145.65 Aligned_cols=191 Identities=15% Similarity=0.108 Sum_probs=139.0
Q ss_pred ccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhcccc---CCCccccccCCchhhhhhcCcccccccccccc
Q 006042 387 SDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEK---TGGLAVWERAGASLLLEWLNPVEFLEDLIVEH 463 (663)
Q Consensus 387 ~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~---DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~ 463 (663)
.+..-+++.+|..++.. ....+..++.++||.++|.+. .|||+...... +.....+.
T Consensus 32 ~~l~Yw~l~~L~lLg~~-------~~~~~~~~~~i~~i~~~q~~~~~~~gGF~g~~~~~-------------~~g~~~~~ 91 (390)
T 3dra_B 32 LAIIYFCLHGLQLIQKF-------QFTNQELIYYRNFIINQFMIENNQIISFRSTHYFQ-------------KTNQKYDC 91 (390)
T ss_dssp HHHHHHHHHHHHHTTCC-------CCCHHHHHHHHHHHHHHHEEECSSCEEECSSGGGG-------------GSCTTTSC
T ss_pred HHHHHHHHHHHHHhCCC-------ccchHHHHHHHHHHHHHhccccCCCCCcCCCccCC-------------CCCCccCc
Confidence 35677788888777641 124556778899999998761 27886543110 00101245
Q ss_pred cccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcc---c-CCCcc-----c-------CCCCcchhHHHHH
Q 006042 464 TYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQT---A-DGSWY-----G-------NWGICFIYGTCFA 527 (663)
Q Consensus 464 ~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~---~-DGsw~-----g-------~wg~~~~Y~T~~a 527 (663)
++...|..+|.+|+.++... . +.++ .++.++||.+.|+ + ||||. + .+|..++-.+.+|
T Consensus 92 ~hl~~Ty~Al~~L~ilg~~~--~--~~vd--r~~i~~~l~~lQ~~~~~~dGsF~~~~~~~~~dg~~~~~ge~D~R~~YcA 165 (390)
T 3dra_B 92 PNLSSTLFALYNLLILKSPY--H--TIIN--RKKIMNFLCKCQVKDGINKGGFVPTLYYNEENGDYKQYGEPDLRVCYMA 165 (390)
T ss_dssp CBHHHHHHHHHHHHHTTCCG--G--GTCC--HHHHHHHHHHHBCCSSTTTTCBCSEEEEETTTTEEEEESCCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCchh--h--cccc--HHHHHHHHHHHhCCCCCCCCceeeeccccccccccccCCcchHHHHHHH
Confidence 78889999999999987520 0 1122 3778999999998 6 89998 2 2677777777778
Q ss_pred HHHHHHcCCCcC-----------ChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHc
Q 006042 528 LGGLQVAGKTYN-----------NCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISA 596 (663)
Q Consensus 528 L~aL~~~g~~~~-----------~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~a 596 (663)
+..+..++...+ ....++++++||+++|+.||||+.. |+.+|+...|.+||.+|..+
T Consensus 166 ~~i~~lL~~~~~~~~~~~~~~~~~~id~~~~~~~I~~cq~ydGGfg~~------------p~~EsH~G~TfCalaaL~lL 233 (390)
T 3dra_B 166 LLIRHLMKYDDNNNNNNREDSNETDIDLISLQQFILDRININGGFSST------------IMDESHLGFTFCAIASLKLL 233 (390)
T ss_dssp HHHHHHTTCC-------------CCCCHHHHHHHHHTTBCTTSCBCSS------------TTSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcccccccccccccccccHHHHHHHHHHhcCCCCCcCCC------------CCcccccchhHHHHHHHHHh
Confidence 877887776520 0245799999999999999999987 46789999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhcCc
Q 006042 597 GQADRDPTPIHRGVKLLINSQL 618 (663)
Q Consensus 597 g~~~~~~~~v~r~i~~L~~~Q~ 618 (663)
+... ..+++.++||+++|.
T Consensus 234 ~~~~---~d~~~l~~WL~~RQ~ 252 (390)
T 3dra_B 234 NYPL---EKLKSTKEWLIHRQV 252 (390)
T ss_dssp TCCG---GGCHHHHHHHHTTBC
T ss_pred Cccc---ccHHHHHHHHHHcCc
Confidence 8762 358899999999997
No 27
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=99.46 E-value=1e-11 Score=145.73 Aligned_cols=274 Identities=20% Similarity=0.179 Sum_probs=178.1
Q ss_pred CCchHHHHHHHHHHHcCC----CCch----HHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccc
Q 006042 318 SQTWDTALGLQALMACNI----ADEV----ESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDC 389 (663)
Q Consensus 318 s~vwdTal~~~AL~~ag~----~~~~----~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~ 389 (663)
+....+.++..+|.+.+. .++. ...|+++++-|+..|..| |+|.. |+ +..++.+.
T Consensus 337 s~~~p~i~v~~yl~~t~q~~~l~~~~~~~a~~~l~~gyqrll~~q~~D---Gsfs~---------w~-----~~~~s~wL 399 (767)
T 4fxk_B 337 IYLAPTLAASRYLDKTEQWSTLPPETKDHAVDLIQKGYMRIQQFRKAD---GSYAA---------WL-----SRDSSTWL 399 (767)
T ss_dssp GGTHHHHHHHHHHHHTCTTTTSCSSHHHHHHHHHHHHHHHHTTTBCTT---SCBBS---------SS-----SSCBCHHH
T ss_pred HhhhhhhhHHHHHHhhhhhcccCHHHHHHHHHHHHHHHHHHHHhhcCC---CCccc---------CC-----CCCCCchh
Confidence 445667788888888764 2222 233566666666667655 66542 11 12257799
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccc-----ccc
Q 006042 390 TAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIV-----EHT 464 (663)
Q Consensus 390 Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~-----d~~ 464 (663)
||+++..|..+.+. ..+++..+.++++||++.|.+ ||.|..... .+.+.+. +..
T Consensus 400 TAyV~~~l~~A~~~------i~id~~~i~~a~~wL~~~Q~~-~G~f~e~g~--------------~~~~~~~gg~~~~~~ 458 (767)
T 4fxk_B 400 TAFVLKVLSLAQEQ------VGGSPEKLQETSNWLLSQQQA-DGSFQDPCP--------------VLDRSMQGGLVGNDE 458 (767)
T ss_dssp HHHHHHHHHHTCSS------SSCCHHHHHHHHHHHHHTBCT-TSCBCCSSC--------------SCCCCCCSSTTTHHH
T ss_pred HHHHHHHHHHHHhh------cCcchHHHHHHHHHHHHhhhh-cccchhcch--------------hcchhhcCCcCCCcc
Confidence 99999999988652 126788999999999999999 999953221 1111111 113
Q ss_pred ccCcHHHHHHHHHHhhhhCCCc----chHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCC
Q 006042 465 YVECTASAIEAFMLFKKLYPHH----RKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNN 540 (663)
Q Consensus 465 ~~~~Ta~~L~aL~~~~~~~~~~----~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~ 540 (663)
.+..||+++.+|...+....+. ....+...|.++++||.+..+.+ ....|..+.+..||+.++..
T Consensus 459 ~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~~--------~~~~y~~Al~ayaL~l~~~~--- 527 (767)
T 4fxk_B 459 TVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASAG--------LLGAHAAAITAYALSLTKAP--- 527 (767)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTSC--------CCCHHHHHHHHHHHHHHTCT---
T ss_pred chhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhcc--------cCCHHHHHHHHHHHHHcCCc---
Confidence 4568999999998876532221 12346678999999998876542 34578888888888888764
Q ss_pred hHHHHHHHHHHHhhcCCCCC---ccCCCcCCCCc---c------ccCCCCCC-CcHHHHHHHHHHHHHcCCCCCCcHHHH
Q 006042 541 CLAIRRAVDFLLNAQSDDGG---WGESYKSCPNK---I------YTPLEGKR-STVVHTALAVLSLISAGQADRDPTPIH 607 (663)
Q Consensus 541 ~~~i~ra~~~Ll~~Q~~DGg---Wg~~~~s~~~~---~------y~~~~g~~-s~~~~Ta~ALlaL~~ag~~~~~~~~v~ 607 (663)
......+.+-|.+....+|+ |.....+.... . +....... ..++.|||||++++..... .+.+.
T Consensus 528 ~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~~---~~~a~ 604 (767)
T 4fxk_B 528 VDLLGVAHNNLMAMAQETGDNLYWGSVTGSQSNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEGK---AEMAD 604 (767)
T ss_dssp THHHHHHHHHHHTTCCBCSSCBCCCCCCCCCGGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTSS---CHHHH
T ss_pred HHHHHHHHHHHHhhcEEcCCeeEEeccCCCcccccccccccccccccccccchHHHHHHHHHHHHHHhcCCc---hhHHH
Confidence 34555666666665544332 43221110000 0 00000111 2367899999998876432 24688
Q ss_pred HHHHHHHhcCccCCCCCCCccccccccccccccCCccchHHHHHHHHHHHhC
Q 006042 608 RGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRV 659 (663)
Q Consensus 608 r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~~ 659 (663)
+.++||+++|+.+|+|... ..+++.|.||+.|..+.
T Consensus 605 ~iv~WL~~Qr~~~Ggf~ST----------------QdTv~AL~ALa~y~~~~ 640 (767)
T 4fxk_B 605 QASAWLTRQGSFQGGFRST----------------QDTVIALDALSAYWIAS 640 (767)
T ss_dssp HHHHHHHHTCCTTSSCSSH----------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCCCCcCH----------------HHHHHHHHHHHHHHHhc
Confidence 9999999999999999865 46789999999997654
No 28
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...
Probab=99.34 E-value=1.5e-11 Score=146.72 Aligned_cols=230 Identities=16% Similarity=0.118 Sum_probs=151.7
Q ss_pred heecCCCceeecCCCCchHHHHHHHHHHHcCC----CCc----hHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcc
Q 006042 304 IWLGEDGMKVQTFGSQTWDTALGLQALMACNI----ADE----VESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAW 375 (663)
Q Consensus 304 ~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~----~~~----~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW 375 (663)
|...+.|..-|. .|..+-..++...|.+.+. .++ ....|++++++|+..|..+ |+|.. |
T Consensus 255 L~~yPyGC~EQ~-~s~~~P~l~~~~yL~~~~q~~~~~~~~~~~a~~~i~~g~~rll~~Q~~D---Gsfs~---------w 321 (915)
T 2hr0_B 255 LIVTPSGCGEQN-MIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPS---SAFAA---------F 321 (915)
T ss_dssp GCSSCCCSTTGG-GGGTHHHHHHHHHHHHTTCHHHHCTHHHHHHHHHHHHHHHHHGGGCCTT---TCCBS---------S
T ss_pred HHhCCCCcHHHH-HHhhhhHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHHHHhhcCC---CCccc---------c
Confidence 333454432222 2444566677777777653 121 2346788888999999876 66542 1
Q ss_pred cCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHh-hccccCCCccccccCCchhhhhhcCccc
Q 006042 376 TFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLS-LQDEKTGGLAVWERAGASLLLEWLNPVE 454 (663)
Q Consensus 376 ~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~-~Qn~~DGgw~~~~~~~~~~~l~~~~~~e 454 (663)
+ ...++.+.||+++.+|..+.+. + .++...+++|++||.+ .|++ ||+|.....-
T Consensus 322 ~-----~~~~s~wlTAyv~~~l~~a~~~-----~-~v~~~~i~~al~~L~~~~Q~~-dG~f~~~~~~------------- 376 (915)
T 2hr0_B 322 V-----KRAPSTWLTAYVVKVFSLAVNL-----I-AIDSQVLCGAVKWLILEKQKP-DGVFQEDAPV------------- 376 (915)
T ss_dssp S-----SSCBCHHHHHHHHHHHHTTTTT-----S-CCCHHHHHHHHHHHHHHHBCT-TSCBCCCSCC-------------
T ss_pred C-----CCCCcceehHHHHHHHHHhhhc-----C-CCCHHHHHHHHHHHHHhhccC-CCccccCccc-------------
Confidence 1 1235789999999999887641 1 3678999999999995 9999 9999543211
Q ss_pred cccccccc------ccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhccc--------------------
Q 006042 455 FLEDLIVE------HTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTA-------------------- 508 (663)
Q Consensus 455 ~f~~~~~d------~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~-------------------- 508 (663)
+...|.+ .+....|+++|.+|...+..... ......+.|++|++||.+.++.
T Consensus 377 -~~~~m~gg~~~~~~~~~~ltAyvl~aL~~~g~~~~~-~~~~~~~~i~~A~~yL~~~~~~~~~~y~~a~layAL~l~g~~ 454 (915)
T 2hr0_B 377 -IHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEE-QVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRL 454 (915)
T ss_dssp -SSSCCCCSCCCCTTHHHHHHHHHHHHHHHHTTTSTT-TCTTHHHHHHHHHHHHHHHGGGCCSHHHHHHHHHHHHTTTCC
T ss_pred -cchhhcCCccCccccccccHHHHHHHHHhccccccc-CcccchHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHcCCh
Confidence 1111110 12356789999999987542100 0012457899999999987654
Q ss_pred -------------CCCcccCCCCc--chhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccc
Q 006042 509 -------------DGSWYGNWGIC--FIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIY 573 (663)
Q Consensus 509 -------------DGsw~g~wg~~--~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y 573 (663)
+|.|...++.. .+..|++||.+|...+.. +.+.+.++||.++|+.+|||..+
T Consensus 455 a~~~l~~L~~~~~~~~~w~~~~~~~~~ve~TayaLlall~~~~~----~~~~~~v~wL~~qq~~~Ggw~ST--------- 521 (915)
T 2hr0_B 455 KGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLKDF----DFVPPVVRWLNEQRYYGGGYGST--------- 521 (915)
T ss_dssp CHHHHHHHHHTSBTTTBCCCSSCHHHHHHHHHHHHHHHHHTTCT----TTHHHHHHHHHTCCCSSSSCCSH---------
T ss_pred HHHHHHHHHhhccCCCCCCCCCCCccchHHHHHHHHHHHhcCCh----hhHHHHHHHHHhcccCCCCccch---------
Confidence 23322222222 456889999999998763 35889999999999999999854
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHc
Q 006042 574 TPLEGKRSTVVHTALAVLSLISA 596 (663)
Q Consensus 574 ~~~~g~~s~~~~Ta~ALlaL~~a 596 (663)
-.|+.||.||...
T Consensus 522 ----------QdT~~Al~AL~~y 534 (915)
T 2hr0_B 522 ----------QATFMVFQALAQY 534 (915)
T ss_dssp ----------HHHHHHHHHHHHH
T ss_pred ----------hhHHHHHHHHHHH
Confidence 2689999999753
No 29
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=99.28 E-value=7.5e-12 Score=128.78 Aligned_cols=185 Identities=17% Similarity=0.145 Sum_probs=118.0
Q ss_pred HHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHH
Q 006042 419 DAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKA 498 (663)
Q Consensus 419 ~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~ra 498 (663)
...+.|+..|.+ +|||.-.-. .+... ... +.........+.|+.+|++|..+..... .+.+.+++.||
T Consensus 35 ~~Ad~~l~~Q~~-~GGW~kn~d-~~~~~---~~~----~~~~~~t~DnddTa~vl~~Larv~~~~~---~~~y~~Ai~Rg 102 (332)
T 1gxm_A 35 SRADVVLSYQQN-NGGWPKNLD-YNSVG---NGG----GGNESGTIDNGATITEMVFLAEVYKSGG---NTKYRDAVRKA 102 (332)
T ss_dssp GGHHHHHHTCCT-TSCCCSCCC-TTTCC---CCC----CCCSCEECGGGTTHHHHHHHHHHHHHHC---CHHHHHHHHHH
T ss_pred HHHHHHHHcCcC-CCCCCccee-ccccc---ccC----CCCCCCCccCccHHHHHHHHHHHhcccc---chHHHHHHHHH
Confidence 348999999999 999964321 11000 000 1111222346789999999998754311 24578899999
Q ss_pred HHHHHHhcccCCCcccCCCCcchh---------HHHHHHHHHHHcCCC--------------cCChHHHHHHHHHHHhhc
Q 006042 499 VHYIEDEQTADGSWYGNWGICFIY---------GTCFALGGLQVAGKT--------------YNNCLAIRRAVDFLLNAQ 555 (663)
Q Consensus 499 v~~L~~~Q~~DGsw~g~wg~~~~Y---------~T~~aL~aL~~~g~~--------------~~~~~~i~ra~~~Ll~~Q 555 (663)
++||++.|.++|+|...+-.+..| .|+.+|..|..++.. ....++++||++||++.|
T Consensus 103 l~wlL~mQ~~nGGWpqFdpd~~~Yl~~IpFnDDvtarvLelL~~~~~~~~~~~~~~~~~~~~~~~~~av~Rgid~Llk~Q 182 (332)
T 1gxm_A 103 ANFLVNSQYSTGALPQFYPLKGGYSDHATFNDNGMAYALTVLDFAANKRAPFDTDVFSDNDRTRFKTAVTKGTDYILKAQ 182 (332)
T ss_dssp HHHHHHHCCTTSCCBSEESCCSGGGGSEECGGGHHHHHHHHHHHHHTTCTTSCSTTSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhccCCCCCccccCCCcccccccCCcchHHHHHHHHHHHHHHhccCCccccccccchhhhhHHHHHHHHHHHHHhh
Confidence 999999999999998644322222 689999999887531 124689999999999999
Q ss_pred CCCCCccCCCcCCCCc-cccCCCCC----CCcHH-HHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHhcCc
Q 006042 556 SDDGGWGESYKSCPNK-IYTPLEGK----RSTVV-HTALAVLSLISAGQADRDP---TPIHRGVKLLINSQL 618 (663)
Q Consensus 556 ~~DGgWg~~~~s~~~~-~y~~~~g~----~s~~~-~Ta~ALlaL~~ag~~~~~~---~~v~r~i~~L~~~Q~ 618 (663)
.+||||-..|....+. ++.|-... .+-.. .++-.+..|+.... ++ ++|++|++||.++|+
T Consensus 183 e~dggw~g~Wg~qydygT~~Pa~ARayE~psL~~~es~giv~~LM~~~~---~~~v~~aI~~Av~WL~~~q~ 251 (332)
T 1gxm_A 183 WKQNGVLTVWCAQHGALDYQPKKARAYELESLSGSESVGVLAFLMTQPQ---TAEIEQAVRAGVAWFNSPRT 251 (332)
T ss_dssp CEETTEECCCCSEECTTTCCBCCCSTTCCSSEETTTHHHHHHHHTTSCC---CHHHHHHHHHHHHHHTCTTT
T ss_pred CccCCCcCeeccccccccccccccccccccchhHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHHHhccc
Confidence 9999987666432221 22221000 11111 23334444554322 22 269999999999999
No 30
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=99.24 E-value=2.5e-10 Score=144.05 Aligned_cols=271 Identities=19% Similarity=0.185 Sum_probs=174.3
Q ss_pred hheecCCCceeecCCCCchHHHHHHHHHHHcCCC----Cc----hHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCc
Q 006042 303 YIWLGEDGMKVQTFGSQTWDTALGLQALMACNIA----DE----VESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGA 374 (663)
Q Consensus 303 ~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~----~~----~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~Gg 374 (663)
+|...+.|..-|. .+...-..++...|.+.+.- .+ ....|+.+++-++..|..| |+|..
T Consensus 1001 ~L~~~PyGC~EQ~-~s~~~P~~~~~~yL~~~~q~~~~~~~~~~~~~~~i~~g~~r~l~~q~~d---Gsfs~--------- 1067 (1661)
T 2b39_A 1001 HLIQTPSGCGEQN-MIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKS---SAYAA--------- 1067 (1661)
T ss_dssp GSSSSCCCSTTGG-GGGTHHHHHHHHHHHHHTCGGGSCSHHHHHHHHHHHHHHHHHHTTBCTT---SCBCS---------
T ss_pred HHhhcCCCchhhh-hhhcccHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHhhcCC---CCccc---------
Confidence 3344454432222 24445666677777776531 21 1234555666666667655 55542
Q ss_pred ccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHh-hccccCCCccccccCCchhhhhhcCcc
Q 006042 375 WTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLS-LQDEKTGGLAVWERAGASLLLEWLNPV 453 (663)
Q Consensus 375 W~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~-~Qn~~DGgw~~~~~~~~~~~l~~~~~~ 453 (663)
|+ +..++.+.||+++..|..+.+. + .++...++++++||.+ .|+. ||.|.....
T Consensus 1068 w~-----~~~~s~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~~~L~~~~q~~-~g~f~~~~~------------- 1122 (1661)
T 2b39_A 1068 FQ-----YRPPSTWLTAYVVKVFALAANL-----I-AIDSKDLCETVKWLILEKQKP-DGIFQEDGP------------- 1122 (1661)
T ss_dssp ST-----TSCCCHHHHHHHHHHHHHHTTT-----S-CCCHHHHHHHHHHHHHHTBCT-TSCBCCCSC-------------
T ss_pred cC-----CCCCchhhhHHHHHHHHhhhhc-----c-cCCHHHHHHHHHHhhHhhCCC-CCccccccc-------------
Confidence 21 1235789999999999988752 2 3788999999999995 9999 999953211
Q ss_pred ccccccccc------ccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHH
Q 006042 454 EFLEDLIVE------HTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFA 527 (663)
Q Consensus 454 e~f~~~~~d------~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~a 527 (663)
.+.+.|.+ .+....||+++.+|...+.... .........|+++++||.+.... ....|+.+..
T Consensus 1123 -~~~~~~~gg~~~~~~~~~~ltAyvl~aL~~~~~~~~-~~~~~~~~~i~~a~~yL~~~~~~---------~~~~y~~A~l 1191 (1661)
T 2b39_A 1123 -VIHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICE-AQVNSLGRSIAKAGDFLENHYRE---------LRRPYTVAIA 1191 (1661)
T ss_dssp -CCCTTSCCCTTCCTTSSHHHHHHHHHHHHHTTTTTT-TTCSSHHHHHHHHHHHHHHHTTT---------CCSHHHHHHH
T ss_pred -eechhhcCCccccccCccccHHHHHHHHHhcccccc-ccCcchhHHHHHHHHHHHHhhhc---------cCCHHHHHHH
Confidence 11111110 1134568999999987654210 00012457899999999876432 1357888888
Q ss_pred HHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHH
Q 006042 528 LGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIH 607 (663)
Q Consensus 528 L~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~ 607 (663)
..||+.+|.. .+++++.|.+.......|.... +...++..|||||++|+..+... .+.
T Consensus 1192 ayAL~l~g~~------a~~~l~~L~~~~~~~~~W~~~~------------~~~~~vE~tayaLlall~~~~~~----~~~ 1249 (1661)
T 2b39_A 1192 AYALALLGKL------EGDRLTKFLNTAKEKNRWEEPN------------QKLYNVEATSYALLALLARKDYD----TTP 1249 (1661)
T ss_dssp HHHHHHTTCC------CHHHHHHHHHHSBTTTBCCCSS------------CHHHHHHHHHHHHHHHHHHTCTT----TSH
T ss_pred HHHHHHcCCc------HHHHHHHHHhhccCCCCCCCCC------------CCcchHHHHHHHHHHHHhcCChh----hHH
Confidence 8889888764 2455667776655333454220 11235678999999999887542 367
Q ss_pred HHHHHHHhcCccCCCCCCCccccccccccccccCCccchHHHHHHHHHHHhCC
Q 006042 608 RGVKLLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVP 660 (663)
Q Consensus 608 r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~~~ 660 (663)
+.++||.++|+.+|+|... ..+++.|+||+.|..+..
T Consensus 1250 ~iv~wL~~qr~~~gg~~ST----------------qdT~~Al~AL~~y~~~~~ 1286 (1661)
T 2b39_A 1250 PVVRWLNEQRYYGGGYGST----------------QATFMVFQALAQYQKDVP 1286 (1661)
T ss_dssp HHHHHHHHCCTBTTBBCSH----------------HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcccCCCCcccc----------------hHHHHHHHHHHHHHHHcC
Confidence 7899999999999999864 366899999999986653
No 31
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=99.21 E-value=1.2e-12 Score=162.82 Aligned_cols=205 Identities=20% Similarity=0.205 Sum_probs=0.0
Q ss_pred CCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHh-hccccCCCccccccCCchhhhhhcCccccccccccc-
Q 006042 385 QVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLS-LQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVE- 462 (663)
Q Consensus 385 pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~-~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d- 462 (663)
++.|.||++++.|..+.+. +..+++..+.++++||.+ .|++ ||.|..-.. .+.+.|..
T Consensus 1057 ~stWLTAyV~k~f~~A~~~-----i~~Vd~~~l~~~~~wL~~~~Q~~-dG~F~e~~~--------------v~~~~m~Gg 1116 (1642)
T 3prx_B 1057 SSSWLTAYVVKVFAMAAKM-----VAGISHEIICGGVRWLILNRQQP-DGAFKENAP--------------VLSGTMQGG 1116 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccHHHHHHHHHHHHhh-----ccCCCHHHHHHHHHHHHhhccCC-CCccccccc--------------ccchhccCC
Confidence 5789999999999887641 222677899999999998 8999 999953221 12222221
Q ss_pred ----ccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCc
Q 006042 463 ----HTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTY 538 (663)
Q Consensus 463 ----~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~ 538 (663)
-..+..||+++.||...+...+.. ......+|++|++||.+.... ...+|..|.+..||+.+|...
T Consensus 1117 ~~~~~~~~~lTA~vliaL~e~~~~~~~~-~~~~~~~i~~a~~~L~~~~~~---------~~~~Y~~Ai~aYAl~l~~~~~ 1186 (1642)
T 3prx_B 1117 IQGAEEEVYLTAFILVALLESKTICNDY-VNSLDSSIKKATNYLLKKYEK---------LQRPYTTALTAYALAAADQLN 1186 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCcccchHHHHHHHHhcccccccc-cccchHHHHHHHHHHHHhhhc---------CCCHHHHHHHHHHHHhcCCch
Confidence 125779999999999876431111 112456899999999876422 235788888888888887641
Q ss_pred CChHHHHHHHHHHHhhcCCCC-CccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Q 006042 539 NNCLAIRRAVDFLLNAQSDDG-GWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQ 617 (663)
Q Consensus 539 ~~~~~i~ra~~~Ll~~Q~~DG-gWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q 617 (663)
. .++.-|.+. ++ -|... .+...+++.|||||+||+..+.. +...+.++||.++|
T Consensus 1187 --~----~~l~~l~~~---~~~~W~~~------------~~~~~~VE~TaYaLLa~l~~~~~----~~a~~iv~WL~~qr 1241 (1642)
T 3prx_B 1187 --D----DRVLMAAST---GRDHWEEY------------NAHTHNIEGTSYALLALLKMKKF----DQTGPIVRWLTDQN 1241 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --H----HHHHHHHhc---CCCCCCCC------------CCchHHHHHHHHHHHHHhccCch----hhHHHHHHHHHHhc
Confidence 2 222222222 22 24321 01234678999999999987643 24778999999999
Q ss_pred ccCCCCCCCccccccccccccccCCccchHHHHHHHHHHHhCC
Q 006042 618 LENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVP 660 (663)
Q Consensus 618 ~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~~~ 660 (663)
+..|||...+ +++..|.||++|..+..
T Consensus 1242 ~~~Ggf~STQ----------------dTvvaLqALa~Y~~~~~ 1268 (1642)
T 3prx_B 1242 FYGETYGQTQ----------------ATVMAFQALAEYEIQMP 1268 (1642)
T ss_dssp -------------------------------------------
T ss_pred cCCCcccCcH----------------HHHHHHHHHHHHHHhcC
Confidence 9999998653 67899999999988754
No 32
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=99.19 E-value=5.5e-10 Score=141.20 Aligned_cols=267 Identities=16% Similarity=0.115 Sum_probs=168.8
Q ss_pred CCchHHHHHHHHHHHcCC----CCchHHHHHHHHHHH-------HhhcccCCCCCCccccCCCCCCCcccCccCCCCCCC
Q 006042 318 SQTWDTALGLQALMACNI----ADEVESVLGKGHDYL-------KKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQV 386 (663)
Q Consensus 318 s~vwdTal~~~AL~~ag~----~~~~~~~l~ka~~wL-------~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd 386 (663)
+...-..++...|.+.+. .......-+++.++| +..|..| |+|.. | .+..++
T Consensus 1013 s~~~P~~~~~~yL~~~~qw~~l~~~~~~~~~~~~~~i~~g~~r~l~~q~~d---Gsfs~-----------w---~~~~~s 1075 (1676)
T 3cu7_A 1013 MSVVPVFYVFHYLETGNHWNIFHSDPLIEKQKLKKKLKEGMLSIMSYRNAD---YSYSV-----------W---KGGSAS 1075 (1676)
T ss_dssp TTSHHHHHHHHHHHHTTCGGGCSSCHHHHHHHHHHHHHHHHHHGGGGBCTT---SCBCS-----------S---SSSCCC
T ss_pred HhhhhHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHhhccCCC---CCccc-----------c---CCCCCc
Confidence 455666777777766543 111112333444444 3444433 44431 1 233457
Q ss_pred ccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHh-hccccCCCccccccCCchhhhhhcCccccccccccc---
Q 006042 387 SDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLS-LQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVE--- 462 (663)
Q Consensus 387 ~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~-~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d--- 462 (663)
.+.||+++..|..+.+. + .+++..+.++++||.+ .|+. ||.|..-.. .+.+.|.+
T Consensus 1076 ~wLTAyv~~~l~~A~~~-----~-~v~~~~l~~a~~~L~~~~q~~-~g~f~~~~~--------------~~~~~~~gg~~ 1134 (1676)
T 3cu7_A 1076 TWLTAFALRVLGQVNKY-----V-EQNQNSICNSLLWLVENYQLD-NGSFKENSQ--------------YQPIKLQGTLP 1134 (1676)
T ss_dssp HHHHHHHHHHHHHHHTT-----S-CCCHHHHHHHHHHHHHHSBCT-TSCBCCCSS--------------CCCCCCCSCHH
T ss_pred EEEeHHHHHHHHHHHhc-----c-cCCHHHHHHHHHHHHHhhCCC-CCcccCCcc--------------ccchhhcCCcc
Confidence 89999999999988752 2 3788999999999999 9999 999853111 01111110
Q ss_pred ----ccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCc
Q 006042 463 ----HTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTY 538 (663)
Q Consensus 463 ----~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~ 538 (663)
.+.+..||+++.+|...+... ........+.++++||.++... ....|..+.+..||+.+|..
T Consensus 1135 ~~~~~~~~~ltAyvl~aL~~~~~~~---~~~~~~~~i~~a~~yL~~~~~~---------~~~~y~~A~lA~Al~l~g~~- 1201 (1676)
T 3cu7_A 1135 VEARENSLYLTAFTVIGIRKAFDIC---PLVKIDTALIKADNFLLENTLP---------AQSTFTLAISAYALSLGDKT- 1201 (1676)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGS---CCHHHHHHHHHHHHHHHHHHSS---------CSCHHHHHHHHHHHTTSCTT-
T ss_pred cccccCccccHHHHHHHHHhccccc---CCcccHHHHHHHHHHHHHhhhc---------cCCHHHHHHHHHHHHhcCCc-
Confidence 013457899999998765421 0123467899999999876432 23568888777888887764
Q ss_pred CChHHHHHHHHHHHhhcCCC-C-----CccCCCcCCCCccccC-CCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Q 006042 539 NNCLAIRRAVDFLLNAQSDD-G-----GWGESYKSCPNKIYTP-LEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVK 611 (663)
Q Consensus 539 ~~~~~i~ra~~~Ll~~Q~~D-G-----gWg~~~~s~~~~~y~~-~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~ 611 (663)
....+++++.|.+....+ + .|...... ..|.. ..+...++..|||||++|+..+. .+.+.+.++
T Consensus 1202 --~~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~---~~~~~~~~~~~~~ve~tayaLlall~~~~----~~~~~~iv~ 1272 (1676)
T 3cu7_A 1202 --HPQFRSIVSALKREALVKGNPPIYRFWKDNLQH---KDSSVPNTGTARMVETTAYALLTSLNLKD----INYVNPVIK 1272 (1676)
T ss_dssp --CHHHHHHHHHHHHHCEEETTTTSEEECCSCSSC---CSSCCCSCCCHHHHHHHHHHHHHHHHTTC----HHHHHHHHH
T ss_pred --hhhHHHHHHHHHhhhhhccCCccccCCCCCCCC---ccccccCCCccchHHHHHHHHHHHHhcCC----hhHHHHHHH
Confidence 223566777787766533 2 35432110 00100 00111256789999999998763 245788999
Q ss_pred HHHhcCccCCCCCCCccccccccccccccCCccchHHHHHHHHHHHhCC
Q 006042 612 LLINSQLENGDFPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRKRVP 660 (663)
Q Consensus 612 ~L~~~Q~~dG~w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~~~~ 660 (663)
||.++|+.+|+|... ..+++.|+||+.|..+..
T Consensus 1273 wL~~qr~~~Gg~~ST----------------QdT~~Al~AL~~y~~~~~ 1305 (1676)
T 3cu7_A 1273 WLSEEQRYGGGFYST----------------QDTINAIEGLTEYSLLVK 1305 (1676)
T ss_dssp HHHHHSCSSSCCSTT----------------TTHHHHHHHHHHHHHHSC
T ss_pred HHHhccCCCCCcccc----------------HHHHHHHHHHHHHHHHcC
Confidence 999999999999865 467899999999977654
No 33
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=8.2e-10 Score=137.03 Aligned_cols=216 Identities=16% Similarity=0.119 Sum_probs=144.3
Q ss_pred CCchHHHHHHHHHHHcCCCC-----chHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHH
Q 006042 318 SQTWDTALGLQALMACNIAD-----EVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAE 392 (663)
Q Consensus 318 s~vwdTal~~~AL~~ag~~~-----~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~ 392 (663)
|...-..++...|.+.+... +....+++++++|+..|..+ |+|..+ + ...++.+.||+
T Consensus 844 s~~~p~~~~~~yl~~~~~~~~~~~~~~~~~i~~g~~rll~~q~~d---Ggf~~f-~-------------~~~~s~~lTa~ 906 (1325)
T 2pn5_A 844 VKFVPNILVLDYLHAIGSKEQHLIDKATNLLRQGYQNQMRYRQTD---GSFGLW-E-------------TTNGSVFLTAF 906 (1325)
T ss_dssp GGTHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHGGGBCTT---SCBCSS-S-------------SSCCCHHHHHH
T ss_pred HHHhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCC---CCeecc-C-------------CCCCCeeehHH
Confidence 44456666777777776432 23456788889999999876 665421 1 12357789999
Q ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHH
Q 006042 393 GLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASA 472 (663)
Q Consensus 393 al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~ 472 (663)
++.+|..+.+. +..++.+.++++++||.+.|++ ||+|..-........ .+. .+ .....|+++
T Consensus 907 v~~~l~~a~~~-----~~~v~~~~l~~a~~~L~~~q~~-dG~f~~~~~~~~~~~---------~g~--~~-~~~~~tayv 968 (1325)
T 2pn5_A 907 VGTSMQTAVKY-----ISDIDAAMVEKALDWLASKQHF-SGRFDKAGAEYHKEM---------QGG--LR-NGVALTSYV 968 (1325)
T ss_dssp HHHHHHHHTTT-----CSCSCHHHHHHHHHHHHHTCCT-TSCCCCCSCCSCHHH---------HCC--SS-TTHHHHHHH
T ss_pred HHHHHHHHHhh-----EEcCCHHHHHHHHHHHHhhhcc-CCCccccccccChhh---------cCc--cc-CCccccHHH
Confidence 99999988642 3346788999999999999999 999843211000000 000 01 123457888
Q ss_pred HHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhccc-CCCcc-----------c------------------------CC
Q 006042 473 IEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTA-DGSWY-----------G------------------------NW 516 (663)
Q Consensus 473 L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~-DGsw~-----------g------------------------~w 516 (663)
|.+|...+.... .....|++|++||.++|+. ++.|. + .|
T Consensus 969 l~aL~~~g~~~~-----~~~~~i~~a~~~L~~~~~~~~~~~~~a~~ayaL~l~g~~~~~~~l~~L~~~~~~~~~~~~~~w 1043 (1325)
T 2pn5_A 969 LMALLENDIAKA-----KHAEVIQKGMTYLSNQFGSINNAYDLSIATYAMMLNGHTMKEEALNKLIDMSFIDADKNERFW 1043 (1325)
T ss_dssp HHHHHTCHHHHH-----HTHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHTCTTHHHHHHHHHHTCEEETTTTEEEC
T ss_pred HHHHhhCccccc-----ccHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcCCchHHHHHHHHHhhhhhccCCCcccC
Confidence 888876543210 1235789999999998876 56552 0 01
Q ss_pred C-CcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHH
Q 006042 517 G-ICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLIS 595 (663)
Q Consensus 517 g-~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ 595 (663)
. ...+-.|++||.+|...+. .+.+.+.++||+++|+.+|||... -.|++||+||..
T Consensus 1044 ~~~s~ve~tA~aLlall~~~~----~~~~~~~v~wL~~q~~~~g~w~sT-------------------q~T~~aL~AL~~ 1100 (1325)
T 2pn5_A 1044 NTTNPIETTAYALLSFVMAEK----YTDGIPVMNWLVNQRYVTGSFPST-------------------QDTFVGLKALTK 1100 (1325)
T ss_dssp CSSSHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHTTCCTTSSCSSH-------------------HHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHhhhcc----chhhHHHHHHHHhccCCCCCccch-------------------HHHHHHHHHHHH
Confidence 0 1123367899999988764 457789999999999999999854 278999999975
Q ss_pred c
Q 006042 596 A 596 (663)
Q Consensus 596 a 596 (663)
.
T Consensus 1101 y 1101 (1325)
T 2pn5_A 1101 M 1101 (1325)
T ss_dssp H
T ss_pred H
Confidence 4
No 34
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=99.10 E-value=1.4e-09 Score=135.02 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHH
Q 006042 416 RLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFI 495 (663)
Q Consensus 416 ~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i 495 (663)
.++++++|++++|++ ||||++|+..++ .++++...||+|+.+|+.+.+... ..++.+
T Consensus 984 ~i~~g~~~ll~~q~~-dGgf~~f~~~~~-----------------~~~~s~wlTAyv~~~l~~a~~~~~-----v~~~~l 1040 (1451)
T 4acq_A 984 YLNTGYQRQLNYKHY-DGSYSTFGERYG-----------------RNQGNTWLTAFVLKTFAQARAYIF-----IDEAHI 1040 (1451)
T ss_dssp HHHHHHHHHGGGBCT-TSCBCSSTTGGG-----------------CCCCCHHHHHHHHHHHHHHTTTSC-----CCTHHH
T ss_pred HHHHHHHHHHhhcCC-CCCeeeccCCCC-----------------CCCCchhHHHHHHHHHHHhhhhcc-----cCHHHH
Confidence 478999999999999 999999864321 012456689999999998875421 124689
Q ss_pred HHHHHHHHHhcccCCCccc--CC-------CC-cchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCC--CCCccC
Q 006042 496 VKAVHYIEDEQTADGSWYG--NW-------GI-CFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSD--DGGWGE 563 (663)
Q Consensus 496 ~rav~~L~~~Q~~DGsw~g--~w-------g~-~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~--DGgWg~ 563 (663)
++|++||+++|++||+|.. .| |. ++.|.|+++|.||..+|... .++.+++|++||.++... +|+.
T Consensus 1041 ~~a~~wL~~~Q~~dG~f~~~g~~~~~~m~gg~~~~~~lTAyvl~aL~~~g~~~-~~~~i~~A~~~L~~~~~~~~~~~~-- 1117 (1451)
T 4acq_A 1041 TQALIWLSQRQKDNGCFRSSGSLLNNAIKGGVEDEVTLSAYITIALLEIPLTV-THPVVRNALFCLESAWKTAQEGDH-- 1117 (1451)
T ss_dssp HHHHHHHHHTEETTTEECCCCCCSCGGGCCSCSCHHHHHHHHHHHHHHTTCCT-TCHHHHHHHHHHHHHHHHHTSSCS--
T ss_pred HHHHHHHHhhcccCCcccccCcccchhhcCCCCCCccchHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhhhhcccccc--
Confidence 9999999999999999984 44 12 46788999999999999764 678999999999876321 1211
Q ss_pred CCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCC---CCCC
Q 006042 564 SYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGD---FPQQ 626 (663)
Q Consensus 564 ~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~---w~~~ 626 (663)
..++...|....||..+|.. +..+..++=|.+....+|+ |.+.
T Consensus 1118 ----------------~~~~y~~AllAyAlal~g~~----~~~~~~l~~L~~~a~~~~~~~~W~~~ 1163 (1451)
T 4acq_A 1118 ----------------GSHVYTKALLAYAFALAGNQ----DKRKEVLKSLNEEAVKKDNSVHWERP 1163 (1451)
T ss_dssp ----------------SSTHHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHCCBCSSCBCCCCC
T ss_pred ----------------cCChHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHhhccCCceecCCC
Confidence 13345556666667777642 3455577778777666665 8654
No 35
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.70 E-value=1.5e-07 Score=100.23 Aligned_cols=146 Identities=16% Similarity=0.080 Sum_probs=101.9
Q ss_pred chHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCc
Q 006042 389 CTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVEC 468 (663)
Q Consensus 389 ~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~ 468 (663)
..+.+++||...+. .+. .+.+..|+..|+. ++|.. . +..++|.
T Consensus 138 q~sL~vLALC~~g~--------~v~----~~~v~~Ll~~~~~--~~~~~-g----------------------~~~sVDT 180 (414)
T 2bb6_A 138 QYSLGILALCVHQK--------RVH----DSVVGKLLYAVEH--KPHLL-Q----------------------DHVSVDT 180 (414)
T ss_dssp HHHHHHHHHHHTTC--------CCC----HHHHHHHHHHHHS--SSCSC-C----------------------TTTHHHH
T ss_pred HHHHHHHHHHHcCC--------Ccc----HHHHHHHHHHhhc--cCcCC-C----------------------CcccccH
Confidence 46677777765432 233 3456777777764 44420 0 1125889
Q ss_pred HHHHHHHHHHhhhhCCCcc--hHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCC-hHHHH
Q 006042 469 TASAIEAFMLFKKLYPHHR--KKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNN-CLAIR 545 (663)
Q Consensus 469 Ta~~L~aL~~~~~~~~~~~--~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~-~~~i~ 545 (663)
||.+++||..+++.. .++ +..++.+++..+++|.+.|++||+|+ ..|.|+.|++||...+..+.. .....
T Consensus 181 ~AMA~lAL~C~~~~~-~~~~~~~~i~~al~~l~~~l~~~Q~~dG~FG------N~~ST~lA~QAL~~~~~~~~~~~w~~~ 253 (414)
T 2bb6_A 181 MAMAGMAFSCLELSN-LNPKQRNRINLALKRVQEKILKAQTPEGYFG------NVYSTPLALQLLMGSLRPSVELGTACL 253 (414)
T ss_dssp HHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHHHHHHHTBCTTSCBS------STTTHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHHHHHHhhcCCCCcc------chhhHHHHHHHHHhcCCCcccccchHH
Confidence 999999999988652 121 23344455555588888899999984 478899999999999886411 13788
Q ss_pred HHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCC
Q 006042 546 RAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQ 598 (663)
Q Consensus 546 ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~ 598 (663)
+++++|++ |++||+|.. +..|+-+|.||...+.
T Consensus 254 ~a~~~Ll~-q~~dG~F~n-------------------p~ataQ~lpaL~gkty 286 (414)
T 2bb6_A 254 KAKAALQA-SLQHKTFQN-------------------PLMISQLLPVLNQKSY 286 (414)
T ss_dssp HHHHHHHH-HHTTTCCCS-------------------HHHHHHHHHHTTTCCG
T ss_pred HHHHHHHH-hccCCCCCC-------------------hHHHHHHHHHhcCCCc
Confidence 99999999 999999972 3589999999875444
No 36
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=98.65 E-value=1e-07 Score=101.57 Aligned_cols=148 Identities=16% Similarity=0.030 Sum_probs=103.4
Q ss_pred CCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHH
Q 006042 317 GSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKC 396 (663)
Q Consensus 317 ~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 396 (663)
.+.++..+++++||+.+|.... .+.+..|...|..+ .|. .|+| | ++|.||+|++|
T Consensus 133 ~tn~Yq~sL~vLALC~~g~~v~-----~~~v~~Ll~~~~~~----~~~-------~g~~-~--------sVDT~AMA~lA 187 (414)
T 2bb6_A 133 RTSYYQYSLGILALCVHQKRVH-----DSVVGKLLYAVEHK----PHL-------LQDH-V--------SVDTMAMAGMA 187 (414)
T ss_dssp SSCHHHHHHHHHHHHHTTCCCC-----HHHHHHHHHHHHSS----SCS-------CCTT-T--------HHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCCcc-----HHHHHHHHHHhhcc----CcC-------CCCc-c--------cccHHHHHHHH
Confidence 5677999999999999987653 22445566655432 211 1232 2 78999999999
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHH----HHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHH
Q 006042 397 VLQLSLMPPEIVGEKMEPERLYDAV----NFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASA 472 (663)
Q Consensus 397 L~~~~~~~~~~~~~~~~~~~i~~a~----~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~ 472 (663)
|..+.+... .+...+.+.+++ ++|++.|++ ||+|+ .+..|+.+
T Consensus 188 L~C~~~~~~----~~~~~~~i~~al~~l~~~l~~~Q~~-dG~FG----------------------------N~~ST~lA 234 (414)
T 2bb6_A 188 FSCLELSNL----NPKQRNRINLALKRVQEKILKAQTP-EGYFG----------------------------NVYSTPLA 234 (414)
T ss_dssp HHHHHHHTS----CGGGHHHHHHHHHHHHHHHHHTBCT-TSCBS----------------------------STTTHHHH
T ss_pred HHHHhhcCC----CcchHHHHHHHHHHHHHHHHHhhcC-CCCcc----------------------------chhhHHHH
Confidence 998864211 112356778877 888888999 99996 23459999
Q ss_pred HHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHc
Q 006042 473 IEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVA 534 (663)
Q Consensus 473 L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~ 534 (663)
+.||...+.. +. +-.-.+.+++++|++ |.+||+|. ....|+.+|.||..-
T Consensus 235 ~QAL~~~~~~-~~----~~~w~~~~a~~~Ll~-q~~dG~F~------np~ataQ~lpaL~gk 284 (414)
T 2bb6_A 235 LQLLMGSLRP-SV----ELGTACLKAKAALQA-SLQHKTFQ------NPLMISQLLPVLNQK 284 (414)
T ss_dssp HHHHTTCSSC-CH----HHHHHHHHHHHHHHH-HHTTTCCC------SHHHHHHHHHHTTTC
T ss_pred HHHHHhcCCC-cc----cccchHHHHHHHHHH-hccCCCCC------ChHHHHHHHHHhcCC
Confidence 9999876532 11 111367899999999 99999995 234888888888743
No 37
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.63 E-value=1.8e-07 Score=98.97 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhh---hCCCcc-hHH
Q 006042 415 ERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKK---LYPHHR-KKE 490 (663)
Q Consensus 415 ~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~---~~~~~~-~~~ 490 (663)
..-.+.+.-|+..|+. ||++ | ++|.+|.+++||..+.. ...+.+ +..
T Consensus 130 ~v~~~~v~kLl~~~~~-~g~~--------------------~--------sVDT~AMa~LAL~C~~~~~~~~~~~~~~~~ 180 (399)
T 2pmv_A 130 EATLPIAVRFAKTLLA-NSSP--------------------F--------NVDTGAMATLALTCMYNKIPVGSEEGYRSL 180 (399)
T ss_dssp HHHHHHHHHHHHHHHH-CCSC--------------------C--------CHHHHHHHHHHHHHHHTBCCTTCCSSHHHH
T ss_pred CCCHHHHHHHHHHHHc-cCCc--------------------c--------cchHHHHHHHHHHHHhhccccccchhhHHH
Confidence 3456778888889998 8643 1 47889999999998876 221112 345
Q ss_pred HHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCCCcCChH-HHHHHHHHHHhhcCCCCCccCCCcCCC
Q 006042 491 IENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCL-AIRRAVDFLLNAQSDDGGWGESYKSCP 569 (663)
Q Consensus 491 ~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~-~i~ra~~~Ll~~Q~~DGgWg~~~~s~~ 569 (663)
+..+|++++++|.+.|++||+|+ ..|.|+.|++||...+... ... ...++.+||++ |++||+|+.
T Consensus 181 i~~ai~~~~~~l~~~q~~dG~fG------n~yST~LA~QAL~~~~~~~-~~~W~c~~al~~l~~-q~~~G~F~n------ 246 (399)
T 2pmv_A 181 FGQVLKDIVEKISMKIKDNGIIG------DIYSTGLAMQALSVTPEPS-KKEWNCKKTTDMILN-EIKQGKFHN------ 246 (399)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBS------SHHHHHHHHHHHHHCSSCC-SSCCCHHHHHHHHHH-HHTTTTTCS------
T ss_pred HHHHHHHHHHHHHHhhcCCCccc------ccccHHHHHHHHHhcCCCc-cccccHHHHHHHHHH-HhhCCCcCC------
Confidence 88999999999999999999984 5899999999999998753 344 78899999999 999999972
Q ss_pred CccccCCCCCCCcHHHHHHHHHHHHHcCCC
Q 006042 570 NKIYTPLEGKRSTVVHTALAVLSLISAGQA 599 (663)
Q Consensus 570 ~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~ 599 (663)
+..|+-+|.+|...++.
T Consensus 247 -------------p~~taQilPaL~~ktyl 263 (399)
T 2pmv_A 247 -------------PMSIAQILPSLKGKTYL 263 (399)
T ss_dssp -------------HHHHHHHHHHHTTCCGG
T ss_pred -------------HHHHHHHHHHhcCCCcc
Confidence 45889999998755443
No 38
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*
Probab=98.52 E-value=5.2e-06 Score=97.33 Aligned_cols=233 Identities=20% Similarity=0.158 Sum_probs=134.7
Q ss_pred HHHHHHHHHhhhheecCCCce--eecCCCCchHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHhhcccCCCCCCccccCC
Q 006042 292 AFKKHLNRIADYIWLGEDGMK--VQTFGSQTWDTALGLQALMACNIA-DEVESVLGKGHDYLKKAQIRDNPVGDYKGNFR 368 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~g~~--~~~~~s~vwdTal~~~AL~~ag~~-~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~ 368 (663)
.++++++++..| ...||.+ ..+..+..|-|++++..|.++..- .-....+.++++||...|..+ |.|....+
T Consensus 369 ~l~~gyqrll~~--q~~DGsfs~w~~~~~s~wLTAyV~~~l~~A~~~i~id~~~i~~a~~wL~~~Q~~~---G~f~e~g~ 443 (767)
T 4fxk_B 369 LIQKGYMRIQQF--RKADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQVGGSPEKLQETSNWLLSQQQAD---GSFQDPCP 443 (767)
T ss_dssp HHHHHHHHHTTT--BCTTSCBBSSSSSCBCHHHHHHHHHHHHHTCSSSSCCHHHHHHHHHHHHHTBCTT---SCBCCSSC
T ss_pred HHHHHHHHHHHh--hcCCCCcccCCCCCCCchhHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHhhhhc---ccchhcch
Confidence 367788888887 5677743 222356789999999999987421 111467999999999999876 66653211
Q ss_pred C---CCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCC---CCHHHHHHHHHHHHhhccccCCCccccccCC
Q 006042 369 H---FSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEK---MEPERLYDAVNFLLSLQDEKTGGLAVWERAG 442 (663)
Q Consensus 369 ~---~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~---~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~ 442 (663)
- ...||-.- ...++..||+++.||+.......+....+ .....+.++++||....+. ++.
T Consensus 444 ~~~~~~~gg~~~-----~~~~~~ltAyvliaL~e~~~~~~~~~~~~~~~~~~~~i~ka~~~L~~~~~~---~~~------ 509 (767)
T 4fxk_B 444 VLDRSMQGGLVG-----NDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKANSFLGEKASA---GLL------ 509 (767)
T ss_dssp SCCCCCCSSTTT-----HHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHHHHHHHHTTS---CCC------
T ss_pred hcchhhcCCcCC-----CccchhHHHHHHHHHHhcCCccccchhhhhHhHHHHHHHHHHHHHHHHhhc---ccC------
Confidence 1 11122110 01234569999999987653221100000 0134688899999765443 221
Q ss_pred chhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhccc--CCC-cccC----
Q 006042 443 ASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTA--DGS-WYGN---- 515 (663)
Q Consensus 443 ~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~--DGs-w~g~---- 515 (663)
.++..|.+.-+|...+. + ......+.+-|.+.-.. ++. |...
T Consensus 510 ----------------------~~y~~Al~ayaL~l~~~--~-------~~~~~~~~~~L~~~a~~~~~~~~w~~~~~~~ 558 (767)
T 4fxk_B 510 ----------------------GAHAAAITAYALSLTKA--P-------VDLLGVAHNNLMAMAQETGDNLYWGSVTGSQ 558 (767)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTC--T-------THHHHHHHHHHHTTCCBCSSCBCCCCCCCCC
T ss_pred ----------------------CHHHHHHHHHHHHHcCC--c-------HHHHHHHHHHHHhhcEEcCCeeEEeccCCCc
Confidence 11112223333443332 1 12234444555544322 222 2110
Q ss_pred ----------------CCCc---chhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCC
Q 006042 516 ----------------WGIC---FIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPL 576 (663)
Q Consensus 516 ----------------wg~~---~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~ 576 (663)
|... .+-.|++||.++..... ..+.+.+.++||.++||.+|||..+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~s~~VEttayaLla~l~~~~---~~~~a~~iv~WL~~Qr~~~Ggf~ST------------ 623 (767)
T 4fxk_B 559 SNAVSPTPAPRNPSDPMPQAPALWIETTAYALLHLLLHEG---KAEMADQASAWLTRQGSFQGGFRST------------ 623 (767)
T ss_dssp GGGGCCSSSCCCSSSCBCCCCHHHHHHHHHHHHHHHHHTS---SCHHHHHHHHHHHHTCCTTSSCSSH------------
T ss_pred ccccccccccccccccccccchHHHHHHHHHHHHHHhcCC---chhHHHHHHHHHHHhhcCCCCCcCH------------
Confidence 0000 12357889988876543 2467889999999999999999854
Q ss_pred CCCCCcHHHHHHHHHHHHHc
Q 006042 577 EGKRSTVVHTALAVLSLISA 596 (663)
Q Consensus 577 ~g~~s~~~~Ta~ALlaL~~a 596 (663)
-.|++||.||+..
T Consensus 624 -------QdTv~AL~ALa~y 636 (767)
T 4fxk_B 624 -------QDTVIALDALSAY 636 (767)
T ss_dssp -------HHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHH
Confidence 2799999999753
No 39
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=98.45 E-value=3.7e-06 Score=106.34 Aligned_cols=225 Identities=17% Similarity=0.091 Sum_probs=134.2
Q ss_pred HHHHHHHHhhhheecCCCce--eecCCCCchHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHh-hcccCCCCCCccccC
Q 006042 293 FKKHLNRIADYIWLGEDGMK--VQTFGSQTWDTALGLQALMACNIA--DEVESVLGKGHDYLKK-AQIRDNPVGDYKGNF 367 (663)
Q Consensus 293 ~~~~~~~l~~~~~~~~~g~~--~~~~~s~vwdTal~~~AL~~ag~~--~~~~~~l~ka~~wL~~-~Q~~~~~~G~~~~~~ 367 (663)
++.+++++..| ...||.+ .....+..|-||+++..|.++..- -+ ...+.+|++||.+ .|..+ |.|....
T Consensus 1048 i~~g~~r~l~~--q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~-~~~l~~a~~~L~~~~q~~~---g~f~~~~ 1121 (1661)
T 2b39_A 1048 IRKGYTQQLAF--RQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAID-SKDLCETVKWLILEKQKPD---GIFQEDG 1121 (1661)
T ss_dssp HHHHHHHHHTT--BCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTSCCC-HHHHHHHHHHHHHHTBCTT---SCBCCCS
T ss_pred HHHHHHHHHHh--hcCCCCccccCCCCCchhhhHHHHHHHHhhhhcccCC-HHHHHHHHHHhhHhhCCCC---Ccccccc
Confidence 45566667666 4677743 222356799999999999886421 12 5789999999995 77765 6664211
Q ss_pred ---CCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCch
Q 006042 368 ---RHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGAS 444 (663)
Q Consensus 368 ---~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~ 444 (663)
.....||..- ...+++..||+++.+|...++.... +.+.....+.++++||.+.... +.
T Consensus 1122 ~~~~~~~~gg~~~----~~~~~~~ltAyvl~aL~~~~~~~~~--~~~~~~~~i~~a~~yL~~~~~~----~~-------- 1183 (1661)
T 2b39_A 1122 PVIHQEMIGGFRD----TREKDVSLTAFVLIALHEAKDICEA--QVNSLGRSIAKAGDFLENHYRE----LR-------- 1183 (1661)
T ss_dssp CCCCTTSCCCTTC----CTTSSHHHHHHHHHHHHHTTTTTTT--TCSSHHHHHHHHHHHHHHHTTT----CC--------
T ss_pred ceechhhcCCccc----cccCccccHHHHHHHHHhccccccc--cCcchhHHHHHHHHHHHHhhhc----cC--------
Confidence 1111233210 0112455699999999876542100 1112456889999999664221 10
Q ss_pred hhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCC-cchhH
Q 006042 445 LLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGI-CFIYG 523 (663)
Q Consensus 445 ~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~-~~~Y~ 523 (663)
.+...|....||...+.. .++.++.|.+.......|....+. ..+-.
T Consensus 1184 --------------------~~y~~A~layAL~l~g~~------------a~~~l~~L~~~~~~~~~W~~~~~~~~~vE~ 1231 (1661)
T 2b39_A 1184 --------------------RPYTVAIAAYALALLGKL------------EGDRLTKFLNTAKEKNRWEEPNQKLYNVEA 1231 (1661)
T ss_dssp --------------------SHHHHHHHHHHHHHTTCC------------CHHHHHHHHHHSBTTTBCCCSSCHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHHcCCc------------HHHHHHHHHhhccCCCCCCCCCCCcchHHH
Confidence 111123333344443321 133455666655433344321110 12346
Q ss_pred HHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHc
Q 006042 524 TCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISA 596 (663)
Q Consensus 524 T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~a 596 (663)
|++||.+|...+.. ..+.+.++||.++|+.+|||..+ -.|+.||.||...
T Consensus 1232 tayaLlall~~~~~----~~~~~iv~wL~~qr~~~gg~~ST-------------------qdT~~Al~AL~~y 1281 (1661)
T 2b39_A 1232 TSYALLALLARKDY----DTTPPVVRWLNEQRYYGGGYGST-------------------QATFMVFQALAQY 1281 (1661)
T ss_dssp HHHHHHHHHHHTCT----TTSHHHHHHHHHCCTBTTBBCSH-------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCh----hhHHHHHHHHHhcccCCCCcccc-------------------hHHHHHHHHHHHH
Confidence 78999999887653 34677889999999999999843 3789999999854
No 40
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=98.36 E-value=7.9e-06 Score=103.46 Aligned_cols=227 Identities=20% Similarity=0.136 Sum_probs=132.0
Q ss_pred HHHHHHHHhhhheecCCCce--eecCCCCchHHHHHHHHHHHcCC--CCchHHHHHHHHHHHHh-hcccCCCCCCccccC
Q 006042 293 FKKHLNRIADYIWLGEDGMK--VQTFGSQTWDTALGLQALMACNI--ADEVESVLGKGHDYLKK-AQIRDNPVGDYKGNF 367 (663)
Q Consensus 293 ~~~~~~~l~~~~~~~~~g~~--~~~~~s~vwdTal~~~AL~~ag~--~~~~~~~l~ka~~wL~~-~Q~~~~~~G~~~~~~ 367 (663)
++.+++++..| ...||.+ .....+..|-||+++..|.++.. .-+ ...+.+|++||.+ .|..+ |.|....
T Consensus 1049 i~~g~~r~l~~--q~~dGsfs~w~~~~~s~wLTAyv~~~l~~A~~~~~v~-~~~l~~a~~~L~~~~q~~~---g~f~~~~ 1122 (1676)
T 3cu7_A 1049 LKEGMLSIMSY--RNADYSYSVWKGGSASTWLTAFALRVLGQVNKYVEQN-QNSICNSLLWLVENYQLDN---GSFKENS 1122 (1676)
T ss_dssp HHHHHHHGGGG--BCTTSCBCSSSSSCCCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHHHHSBCTT---SCBCCCS
T ss_pred HHHHHHHHhhc--cCCCCCccccCCCCCcEEEeHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHhhCCCC---CcccCCc
Confidence 44555666665 4677743 22335679999999999987631 112 5789999999998 77765 6664211
Q ss_pred C--C-CCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCch
Q 006042 368 R--H-FSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGAS 444 (663)
Q Consensus 368 ~--~-~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~ 444 (663)
+ + ...||..-. ...+++..||+++.||...++.. +.+.....+.++++||.+.... +.
T Consensus 1123 ~~~~~~~~gg~~~~---~~~~~~~ltAyvl~aL~~~~~~~----~~~~~~~~i~~a~~yL~~~~~~----~~-------- 1183 (1676)
T 3cu7_A 1123 QYQPIKLQGTLPVE---ARENSLYLTAFTVIGIRKAFDIC----PLVKIDTALIKADNFLLENTLP----AQ-------- 1183 (1676)
T ss_dssp SCCCCCCCSCHHHH---HHHHHHHHHHHHHHHHHHTGGGS----CCHHHHHHHHHHHHHHHHHHSS----CS--------
T ss_pred cccchhhcCCcccc---cccCccccHHHHHHHHHhccccc----CCcccHHHHHHHHHHHHHhhhc----cC--------
Confidence 1 0 001221100 00013456899999998764310 0111346788999999654321 10
Q ss_pred hhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcc-cCC-----CcccC---
Q 006042 445 LLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQT-ADG-----SWYGN--- 515 (663)
Q Consensus 445 ~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~-~DG-----sw~g~--- 515 (663)
.+ -+.++.|.+......+. ...++.++.|.+... .++ .|...
T Consensus 1184 --------------------~~--y~~A~lA~Al~l~g~~~-------~~a~~~l~~L~~~a~~~~~~~~~~~w~~~~~~ 1234 (1676)
T 3cu7_A 1184 --------------------ST--FTLAISAYALSLGDKTH-------PQFRSIVSALKREALVKGNPPIYRFWKDNLQH 1234 (1676)
T ss_dssp --------------------CH--HHHHHHHHHHTTSCTTC-------HHHHHHHHHHHHHCEEETTTTSEEECCSCSSC
T ss_pred --------------------CH--HHHHHHHHHHHhcCCch-------hhHHHHHHHHHhhhhhccCCccccCCCCCCCC
Confidence 11 23344443332211111 114556667776554 232 34321
Q ss_pred -------CCC-cchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHH
Q 006042 516 -------WGI-CFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTA 587 (663)
Q Consensus 516 -------wg~-~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta 587 (663)
|+. ..+-.|+++|.+|...+. ...+.+.++||.++|+.+|||..+. .|+
T Consensus 1235 ~~~~~~~~~~~~~ve~tayaLlall~~~~----~~~~~~iv~wL~~qr~~~Gg~~STQ-------------------dT~ 1291 (1676)
T 3cu7_A 1235 KDSSVPNTGTARMVETTAYALLTSLNLKD----INYVNPVIKWLSEEQRYGGGFYSTQ-------------------DTI 1291 (1676)
T ss_dssp CSSCCCSCCCHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHSCSSSCCSTTT-------------------THH
T ss_pred ccccccCCCccchHHHHHHHHHHHHhcCC----hhHHHHHHHHHHhccCCCCCccccH-------------------HHH
Confidence 111 122357889999988753 4577888999999999999998541 688
Q ss_pred HHHHHHHHc
Q 006042 588 LAVLSLISA 596 (663)
Q Consensus 588 ~ALlaL~~a 596 (663)
+||.||...
T Consensus 1292 ~Al~AL~~y 1300 (1676)
T 3cu7_A 1292 NAIEGLTEY 1300 (1676)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999854
No 41
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=98.21 E-value=3.4e-06 Score=89.32 Aligned_cols=120 Identities=15% Similarity=0.135 Sum_probs=88.8
Q ss_pred cHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCCCCcchhHHHHHHHHHHHcCC---Cc---C--
Q 006042 468 CTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNWGICFIYGTCFALGGLQVAGK---TY---N-- 539 (663)
Q Consensus 468 ~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~~~~Y~T~~aL~aL~~~g~---~~---~-- 539 (663)
--+.+++||+..+.. .-.+.+.-|...|+.||+++ .+-.++.|++||..++. .. .
T Consensus 116 q~sL~vLALC~~~~~-----------v~~~~v~kLl~~~~~~g~~~------sVDT~AMa~LAL~C~~~~~~~~~~~~~~ 178 (399)
T 2pmv_A 116 GPSLAILALCQKNSE-----------ATLPIAVRFAKTLLANSSPF------NVDTGAMATLALTCMYNKIPVGSEEGYR 178 (399)
T ss_dssp HHHHHHHHHHHHCHH-----------HHHHHHHHHHHHHHHCCSCC------CHHHHHHHHHHHHHHHTBCCTTCCSSHH
T ss_pred hHHHHHHHHHhcCCC-----------CCHHHHHHHHHHHHccCCcc------cchHHHHHHHHHHHHhhccccccchhhH
Confidence 346777888877643 23556666677777776543 24467889999987765 11 1
Q ss_pred --ChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Q 006042 540 --NCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQ 617 (663)
Q Consensus 540 --~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q 617 (663)
...++++++++|++.|++||+||. ..+|+.|+.||+..+......-...++++||++ |
T Consensus 179 ~~i~~ai~~~~~~l~~~q~~dG~fGn-------------------~yST~LA~QAL~~~~~~~~~~W~c~~al~~l~~-q 238 (399)
T 2pmv_A 179 SLFGQVLKDIVEKISMKIKDNGIIGD-------------------IYSTGLAMQALSVTPEPSKKEWNCKKTTDMILN-E 238 (399)
T ss_dssp HHHHHHHHHHHHHHTTSBCTTSCBSS-------------------HHHHHHHHHHHHHCSSCCSSCCCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcccc-------------------cccHHHHHHHHHhcCCCccccccHHHHHHHHHH-H
Confidence 257788888999999999999984 359999999999998742221158899999999 9
Q ss_pred ccCCCCC
Q 006042 618 LENGDFP 624 (663)
Q Consensus 618 ~~dG~w~ 624 (663)
.++|+|.
T Consensus 239 ~~~G~F~ 245 (399)
T 2pmv_A 239 IKQGKFH 245 (399)
T ss_dssp HTTTTTC
T ss_pred hhCCCcC
Confidence 9999996
No 42
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.83 E-value=0.00076 Score=73.12 Aligned_cols=259 Identities=14% Similarity=0.165 Sum_probs=149.3
Q ss_pred hHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHhh------cccCCCCCCccccCCCCCCCcccCccCCCCCCCccchH
Q 006042 321 WDTALGLQALMACNI---ADEVESVLGKGHDYLKKA------QIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTA 391 (663)
Q Consensus 321 wdTal~~~AL~~ag~---~~~~~~~l~ka~~wL~~~------Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta 391 (663)
|+-++++.+|.++.. .+++...+++.++||... +...+ |.....+++ + + . .+ -.||.+
T Consensus 82 y~~Gv~l~gl~~ay~~Tgd~kY~~ya~~~~dfi~~~~p~~~~~~~~~--G~l~~~~r~----~--~--~-~~--~LDD~g 148 (445)
T 3k11_A 82 YEWGVTYSALIAAAETTGDKRYTDYVQNRFRFLAEVAPHFKRVYEEK--GKTDSQLLQ----I--L--T-PH--ALDDAG 148 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHH----H--H--S-CC--SGGGTH
T ss_pred cCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccchhhhhhhcc--CCeeccccc----c--c--C-CC--cchhHH
Confidence 899999999987642 234567788888888753 22211 332211111 1 1 0 11 357888
Q ss_pred HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccc-cCCCccccccCCchhhhhhcCcccccccccccccccCcHH
Q 006042 392 EGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDE-KTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTA 470 (663)
Q Consensus 392 ~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~-~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta 470 (663)
..+.+|+.+-+. .+++...+.+.+.++||...|.+ ++|||.-.......- -.|+-.
T Consensus 149 ~~~~~Li~lY~~----T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~-------------------WiD~ly 205 (445)
T 3k11_A 149 AVCTAMIKLRLK----DESLPVDGLIQNYFDFIINKEYRLADGTFARNRPQRNTL-------------------WLDDMF 205 (445)
T ss_dssp HHHHHHHHHHHH----CTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCSSSTTEE-------------------ETHHHH
T ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHcCCCCCCCceeecCCCCCce-------------------Eecchh
Confidence 877887766431 13456889999999999999842 288885322111111 134444
Q ss_pred HHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcc-cCCCcccCCC--------CcchhHHHHHHHHHHHcCC----C
Q 006042 471 SAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQT-ADGSWYGNWG--------ICFIYGTCFALGGLQVAGK----T 537 (663)
Q Consensus 471 ~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~-~DGsw~g~wg--------~~~~Y~T~~aL~aL~~~g~----~ 537 (663)
.++-.|+.+++...+....-++.+++....+....++ ++|-|+-.|. .....|.++++.||..+=. .
T Consensus 206 M~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~~~~~~WaRGnGW~~~gl~~~l~~lp~~ 285 (445)
T 3k11_A 206 MGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTDHPAFCWARANGWALLTACELLDVLPED 285 (445)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSSCCCCCBHHHHHHHHHHHHHHHHHSCTT
T ss_pred hHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCCCCcceecccchHHHHHHHHHHHhcccc
Confidence 6666677666542211100234444445445555554 4577753221 1234477888888875421 1
Q ss_pred c----CChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHH---HHHHHHHcCCCCCC--cHHHHH
Q 006042 538 Y----NNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTAL---AVLSLISAGQADRD--PTPIHR 608 (663)
Q Consensus 538 ~----~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~---ALlaL~~ag~~~~~--~~~v~r 608 (663)
. ......++.++.|++.|.+||.|...... ++..-..+.||. +|+-....|..+.. .+.++|
T Consensus 286 ~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~---------~~~y~EsSaTAmfaygllkgvr~G~Ld~~~Y~~~A~k 356 (445)
T 3k11_A 286 YPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDC---------NDSYLETSATAIYVYCLAHAINKGWIDAIAYGPVAQL 356 (445)
T ss_dssp CTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTC---------TTSCEEHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCCCchhhccCC---------CCCCCCccHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 1 12366778899999999999999854211 122233445544 44444455654210 136889
Q ss_pred HHHHHHhcCccCCCCC
Q 006042 609 GVKLLINSQLENGDFP 624 (663)
Q Consensus 609 ~i~~L~~~Q~~dG~w~ 624 (663)
+.+-|+++-.+||.-.
T Consensus 357 a~~~L~~~i~~dG~l~ 372 (445)
T 3k11_A 357 GWHAVAGKINEEGQVE 372 (445)
T ss_dssp HHHHHHTTBCTTSCBC
T ss_pred HHHHHHHhCCCCCCEe
Confidence 9999999888899754
No 43
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Probab=97.54 E-value=1.2e-05 Score=100.48 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcccCCCcccCCC--CcchhHHHHHHHHHHHcCCCc--CChHHHHHHHHHHHh-hcCCCCCccCCC
Q 006042 491 IENFIVKAVHYIEDEQTADGSWYGNWG--ICFIYGTCFALGGLQVAGKTY--NNCLAIRRAVDFLLN-AQSDDGGWGESY 565 (663)
Q Consensus 491 ~~~~i~rav~~L~~~Q~~DGsw~g~wg--~~~~Y~T~~aL~aL~~~g~~~--~~~~~i~ra~~~Ll~-~Q~~DGgWg~~~ 565 (663)
....|+.|+.-+++.|++||||. .|+ ...++-|++++..|..+.... .+...+.++++||++ +|++||.|.+..
T Consensus 1028 a~~~i~~Gyqr~l~yq~~DGsfs-~w~~~~~stWLTAyV~k~f~~A~~~i~~Vd~~~l~~~~~wL~~~~Q~~dG~F~e~~ 1106 (1642)
T 3prx_B 1028 AVNQIVTGYAQQMVYKKADHSYA-AFTNRASSSWLTAYVVKVFAMAAKMVAGISHEIICGGVRWLILNRQQPDGAFKENA 1106 (1642)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCee-cCCCCCCccccHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhhccCCCCcccccc
Confidence 34567888888999999999985 344 246788999999998775421 246789999999998 899999998875
Q ss_pred cCCCCccccC-CCCCCCcHHHHHHHHHHHHHcCCCC-----CCcHHHHHHHHHHHhc
Q 006042 566 KSCPNKIYTP-LEGKRSTVVHTALAVLSLISAGQAD-----RDPTPIHRGVKLLINS 616 (663)
Q Consensus 566 ~s~~~~~y~~-~~g~~s~~~~Ta~ALlaL~~ag~~~-----~~~~~v~r~i~~L~~~ 616 (663)
.-... ...+ +.|..+.+.-|||.+.||++++... .....+.+|+.||.++
T Consensus 1107 ~v~~~-~m~Gg~~~~~~~~~lTA~vliaL~e~~~~~~~~~~~~~~~i~~a~~~L~~~ 1162 (1642)
T 3prx_B 1107 PVLSG-TMQGGIQGAEEEVYLTAFILVALLESKTICNDYVNSLDSSIKKATNYLLKK 1162 (1642)
T ss_dssp ---------------------------------------------------------
T ss_pred cccch-hccCCccCCCCcccchHHHHHHHHhcccccccccccchHHHHHHHHHHHHh
Confidence 32211 1111 1112456788999999999886531 1123789999999864
No 44
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=97.42 E-value=0.011 Score=63.14 Aligned_cols=223 Identities=12% Similarity=0.156 Sum_probs=125.2
Q ss_pred CCCCCHHHHHHHHHHHHhhcc-ccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcc
Q 006042 409 GEKMEPERLYDAVNFLLSLQD-EKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHR 487 (663)
Q Consensus 409 ~~~~~~~~i~~a~~wLl~~Qn-~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~ 487 (663)
+++...+.+.+..++|...+. .++|||.....+.. ....+ -.|....++..|..+++...+
T Consensus 127 gd~~Yl~~a~~~ad~L~~~~~r~~~Ggf~~~~~~~~------------~~~~~----WiDgl~M~~p~La~~~~~tgd-- 188 (382)
T 3pmm_A 127 GRMAYLPWLESWAEWAMHEMPRTEQGGMQHMTLAEE------------NHQQM----WDDTLMMTVLPLAKIGKLLNR-- 188 (382)
T ss_dssp CCGGGHHHHHHHHHHHHHTSCBCGGGCBCCCCSSCC------------CTTEE----ETTHHHHTHHHHHHHHHHTTC--
T ss_pred CCHHHHHHHHHHHHHHHhhCCCCcCCCeeeecCCCC------------CCCcE----EecchhhhHHHHHHHHHHHCC--
Confidence 345677888889999987653 23888743211100 00001 123334555566666554222
Q ss_pred hHHHHHHHHHHHHHHHHhcc-cCCCcccCC---------CCcchhHHHHHHHHHHHcC----CCc------CChHHHHHH
Q 006042 488 KKEIENFIVKAVHYIEDEQT-ADGSWYGNW---------GICFIYGTCFALGGLQVAG----KTY------NNCLAIRRA 547 (663)
Q Consensus 488 ~~~~~~~i~rav~~L~~~Q~-~DGsw~g~w---------g~~~~Y~T~~aL~aL~~~g----~~~------~~~~~i~ra 547 (663)
..-++.+++....+....++ ++|-|+-.| ...-..|.++++.||...= .+. ......++.
T Consensus 189 ~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p~~~~~~~~~~~~~~~~ 268 (382)
T 3pmm_A 189 PQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLPEGNAVRRYLITVLDAQ 268 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHHHhhcCCcchhhHHHHHHHHHHH
Confidence 11234455666666666675 468875322 1122347788888886432 111 123567788
Q ss_pred HHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHH---HHHcCCCCC-CcHHHHHHHHHHHhcCccCCCC
Q 006042 548 VDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLS---LISAGQADR-DPTPIHRGVKLLINSQLENGDF 623 (663)
Q Consensus 548 ~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALla---L~~ag~~~~-~~~~v~r~i~~L~~~Q~~dG~w 623 (663)
++.|++.|.+||-|...... +...-..+.||...-+ ....|..+. -.+.++|+.+-|+++-.+||..
T Consensus 269 a~~~~~~q~~~G~W~~~~d~---------~~~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~a~ka~~~l~~~i~~dG~l 339 (382)
T 3pmm_A 269 IAALAECQDDSGLWHTLLDD---------PHSYLEASATAGFAYGILKAVRKRYVGQHYAGVAEKAIRGIVQNISPQGEL 339 (382)
T ss_dssp HHHHHHHCCTTSCEESBTTC---------TTSCEEHHHHHHHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHTBCTTSCB
T ss_pred HHHHHHcCCCCCChhhccCC---------CCCCccccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhCCCCCCE
Confidence 99999999999999854311 1112234555544444 444444421 1237889999999998899976
Q ss_pred CCCcccccccc---cccccc----CCccchHHHHHHHHHHHhC
Q 006042 624 PQQEIMGVFMR---NCMLHY----AEYRNIFPLRALAEYRKRV 659 (663)
Q Consensus 624 ~~~~~~g~f~~---~~~~~y----~~y~~~~pl~AL~~y~~~~ 659 (663)
..-+ .|+..+ .+|++- ..|-+..-|+|+..+.+.+
T Consensus 340 ~~v~-~gt~~g~~~~~Y~~~p~~~~~~G~~~~lla~~e~~~~~ 381 (382)
T 3pmm_A 340 LQTS-FGTGMGSDLDFYRQIPLTSMPYGQAMAILCLTEYLRKY 381 (382)
T ss_dssp CSCB-CCCCCCSSHHHHHTCCBCCCHHHHHHHHHHHHHHHGGG
T ss_pred eCee-cCCCCCCChhhhhcccCCCCCccHHHHHHHHHHHHHhh
Confidence 4332 233111 223222 3566778899999887654
No 45
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=97.13 E-value=0.0017 Score=75.00 Aligned_cols=257 Identities=14% Similarity=0.105 Sum_probs=134.6
Q ss_pred HHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHc---CCCCchHHHHHHHHHHHHhhcccCCCCCCccccCC
Q 006042 292 AFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMAC---NIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFR 368 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~a---g~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~ 368 (663)
.++..+++|+..+-...+|. ....+||||++ |+... +-+. .|....+++||+++|..| |+|...
T Consensus 9 ~~~~~~~~i~~~~~~~~~g~----~S~S~YDTAWV--amvp~~~~~~~~--~p~Fp~~~~wil~nQ~~D---GsWg~~-- 75 (764)
T 3p5p_A 9 RADELVVKIKDMFNALGDGD----ISPSAYDTAWV--ARLATISSDGSE--KPRFPQALNWVFNNQLQD---GSWGIE-- 75 (764)
T ss_dssp HHHHHHHHHHHHHHTCSSCC----CCCCHHHHHHH--HHCEEECTTSCE--EESCHHHHHHHHHCCCTT---SCCSCT--
T ss_pred HHHHHHHHHHHHHhcCCCCc----ccCcHHHHHHH--HhCccccCCCCC--CCCChHHHHHHHHccCCC---CCCCCC--
Confidence 34555666665533222331 24568999994 44432 2111 355677889999999976 555310
Q ss_pred CCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhh
Q 006042 369 HFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLE 448 (663)
Q Consensus 369 ~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~ 448 (663)
+ .|+. +-.+-.|..|+.||.... +.+++++||+.+|.+.= . .|.. ....+-..|
T Consensus 76 ----~--~~~~----~d~ll~TlAcvlAL~~w~----------~~~~~i~~Gl~fl~~nl-~---~~~~--~~~~~vgfe 129 (764)
T 3p5p_A 76 ----S--HFSL----CDRLLNTTNSVIALSVWK----------TGHSQVQQGAEFIAENL-R---LLNE--EDELSPDFQ 129 (764)
T ss_dssp ----T--SCCH----HHHHHHHHHHHHHHHHTT----------CCHHHHHHHHHHHHHHH-T---TCCT--TSCCCTTHH
T ss_pred ----C--Ccch----HHHHHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHHH-H---hhcC--CCCCCceee
Confidence 0 0111 112345888888887642 34579999999997543 2 1210 111111111
Q ss_pred hcCcc--cccccccccccccCcHHHHHHHHHH-----hhhhCCCcch--HHHHHHHHHHHHH--HHHhcccCCCcccCCC
Q 006042 449 WLNPV--EFLEDLIVEHTYVECTASAIEAFML-----FKKLYPHHRK--KEIENFIVKAVHY--IEDEQTADGSWYGNWG 517 (663)
Q Consensus 449 ~~~~~--e~f~~~~~d~~~~~~Ta~~L~aL~~-----~~~~~~~~~~--~~~~~~i~rav~~--L~~~Q~~DGsw~g~wg 517 (663)
.+=|+ +......++.++-...-..+..+.. +.......+. --.-+.+...++| +.+.|..|||++.
T Consensus 130 iifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~kL~~~~~~~~~~p~~llhslE~~~~~~d~~~~~~~~~~~GS~~~--- 206 (764)
T 3p5p_A 130 IIFPALLQKAKALGINLPYDLPFIKYLSTTREARLTDVSAAADNIPANMLNALEGLEEVIDWNKIMRFQSKDGSFLS--- 206 (764)
T ss_dssp HHHHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHHHTSTTSSCGGGGGGGGGSGGGCCTTGGGGGBCTTSCBTT---
T ss_pred eeHHHHHHHHHHcCCCCCCCchhHHHHHHhHHHHHhcCchhhcCCCchHHHHHHhccccccHHHHHhccCCCCCccc---
Confidence 11000 0001112232221111112222211 1100001110 0112334445777 8888999999864
Q ss_pred CcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCC-CCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHc
Q 006042 518 ICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSD-DGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISA 596 (663)
Q Consensus 518 ~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~-DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~a 596 (663)
.+-.||++++. .+. +++.+||.+.++. +||-... | +.++....|-+-.|..+
T Consensus 207 --SPsaTAa~l~~---~~d--------~~~~~YL~~~~~~~~g~VP~~--------y------P~d~~e~l~lID~LqrL 259 (764)
T 3p5p_A 207 --SPASTACVLMN---TGD--------EKCFTFLNNLLDKFGGCVPCM--------Y------SIDLLERLSLVDNIEHL 259 (764)
T ss_dssp --BHHHHHHHHHH---HCC--------HHHHHHHHHHHHHHTSCCCSS--------C------CCHHHHHHHHHHHHHHH
T ss_pred --ChHHHHHHHHh---CCC--------hhHHHHHHHHHHhcCCCCCCc--------C------CCcHHHHHHHHHHHHHc
Confidence 34478877653 221 4788999887766 4443322 2 35678889999999999
Q ss_pred CCCCCCcHHHHHHHHHHHhcC
Q 006042 597 GQADRDPTPIHRGVKLLINSQ 617 (663)
Q Consensus 597 g~~~~~~~~v~r~i~~L~~~Q 617 (663)
|....-.+.|+..++.+-+..
T Consensus 260 Gi~~hF~~EI~~~L~~i~~~~ 280 (764)
T 3p5p_A 260 GIGRHFKQEIKGALDYVYRHW 280 (764)
T ss_dssp TCGGGGHHHHHHHHHHHHHTC
T ss_pred CCccccHHHHHHHHHHHHHHh
Confidence 875322245888888887643
No 46
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.81 E-value=0.05 Score=63.24 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccc-CCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC
Q 006042 496 VKAVHYIEDEQTA-DGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG 559 (663)
Q Consensus 496 ~rav~~L~~~Q~~-DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 559 (663)
++|++||.+.++. +|+-+..+.. ..+.....+-.|..+|..+...+.|+.+++.+.+.-...|
T Consensus 273 ~~~~~YL~~~~~~~~g~VP~~yP~-d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~g 336 (817)
T 3sdr_A 273 AKCLEFLNSVMIKFGNFVPCLYPV-DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERG 336 (817)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSSCC-HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTC
T ss_pred hhHHHHHHHHHHhcCCCCCccCCC-cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcc
Confidence 6889999987655 5544443332 3456778889999999986567899999999887544433
No 47
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.80 E-value=0.03 Score=64.81 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=58.3
Q ss_pred HHHHHHHHHhccc-CCCcccCCCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC-CccCCCcCCCCccc
Q 006042 496 VKAVHYIEDEQTA-DGSWYGNWGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG-GWGESYKSCPNKIY 573 (663)
Q Consensus 496 ~rav~~L~~~Q~~-DGsw~g~wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-gWg~~~~s~~~~~y 573 (663)
++|++||.+.++. +|+-+..+.. ..+...+.+-.|..+|..+...+.|+.+++.+.+.-..+| ||+..
T Consensus 245 ~~~~~YL~~~~~~~~g~VP~~yP~-d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~--------- 314 (785)
T 3s9v_A 245 KKCLDFLNFVLKKFGNHVPCHYPL-DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARE--------- 314 (785)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSCCC-HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTT---------
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCC-cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccc---------
Confidence 6778888887654 4444433332 3356677888999999876567899999999876544433 34311
Q ss_pred cCCCCCCCcHHHHHHHHHHHHHcCCC
Q 006042 574 TPLEGKRSTVVHTALAVLSLISAGQA 599 (663)
Q Consensus 574 ~~~~g~~s~~~~Ta~ALlaL~~ag~~ 599 (663)
+...+...||.++..|...|..
T Consensus 315 ----~~~~Dl~~tAl~FRlLR~~Gy~ 336 (785)
T 3s9v_A 315 ----NPVPDIDDTAMGLRILRLHGYN 336 (785)
T ss_dssp ----CSSCCHHHHHHHHHHHHHTTCC
T ss_pred ----CCCCCHHHHHHHHHHHHhcCCC
Confidence 1124566777777777666653
No 48
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.73 E-value=0.034 Score=63.54 Aligned_cols=253 Identities=15% Similarity=0.158 Sum_probs=129.7
Q ss_pred HHHHHHHHHhhhheecCCCceeecCCCCchHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCC
Q 006042 292 AFKKHLNRIADYIWLGEDGMKVQTFGSQTWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFS 371 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~g~~~~~~~s~vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~ 371 (663)
.++..++++++.+-...+|. ....+||||++ |+...- +. .|.....++||+++|..| |+|..
T Consensus 10 ~~~~~~~~ir~~l~~~~~g~----~S~S~YDTAWV--Amvp~~-~~--~p~Fp~~~~wil~nQ~~D---GsWG~------ 71 (727)
T 3pya_A 10 AFKEAVKSVKTILRNLTDGE----ITISAYDTAWV--ALIDAG-DK--TPAFPSAVKWIAENQLSD---GSWGD------ 71 (727)
T ss_dssp HHHHHHHHHHHHHHTCCSCC----CCCCHHHHHHH--HTCBCS-SS--SBSCHHHHHHHHHTCCTT---SCCSC------
T ss_pred HHHHHHHHHHHHHHhccCCc----ccCcHHHhHHH--hhccCC-CC--CCCCHHHHHHHHhcCCCC---CCCCC------
Confidence 46666777777653333431 24578999994 554321 21 244667889999999977 56531
Q ss_pred CCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcC
Q 006042 372 KGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLN 451 (663)
Q Consensus 372 ~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~ 451 (663)
++ +|+. +-.+-.|..|+.||.... +.+++++||+.+|.+.=.. |..-.....+-..|.+=
T Consensus 72 ~~--~~~~----~D~ll~TLAcvlAL~~w~----------~~~~~i~rGl~fl~~nl~~----~~~~~~~~~pvGfeiif 131 (727)
T 3pya_A 72 AY--LFSY----HDRLINTLACVVALRSWN----------LFPHQCNKGITFFRENIGK----LEDENDEHMPIGFEVAF 131 (727)
T ss_dssp SS--SCCH----HHHHHHHHHHHHHHHHTT----------CCHHHHHHHHHHHHHHGGG----TTCCSSCCCCTTHHHHH
T ss_pred CC--Ccch----hhHHHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHHHHHH----hhccCCCCCCceeeeeH
Confidence 00 1111 112346888888887642 3467999999999764221 11000011111111110
Q ss_pred cc--cccccccccccccCcHHHHHHHHHH-----hhh-------hCCCcchHHHHHHHHHHHHH--HHHhcccCCCcccC
Q 006042 452 PV--EFLEDLIVEHTYVECTASAIEAFML-----FKK-------LYPHHRKKEIENFIVKAVHY--IEDEQTADGSWYGN 515 (663)
Q Consensus 452 ~~--e~f~~~~~d~~~~~~Ta~~L~aL~~-----~~~-------~~~~~~~~~~~~~i~rav~~--L~~~Q~~DGsw~g~ 515 (663)
|+ +...+..++.|.- .+ +|..+.. +.+ ..|..-- -.-+.+.. ++| +.+.|..|||++.
T Consensus 132 P~Ll~~a~~~gl~~p~~-~~--~l~~i~~~r~~kL~r~~~~~~~~~p~~ll-hslEgl~~-~dw~~~~~~q~~~GS~~~- 205 (727)
T 3pya_A 132 PSLLEIARGINIDVPYD-SP--VLKDIYAKKELKLTRIPKEIMHKIPTTLL-HSLEGMRD-LDWEKLLKLQSQDGSFLF- 205 (727)
T ss_dssp HHHHHHHHHTTCCSCTT-CH--HHHHHHHHHHHHHHHSCHHHHTTSCCGGG-GGGGGCCC-CCHHHHGGGCCTTSSBTT-
T ss_pred HHHHHHHHHcCcCCCCC-ch--HHHHHHHhHHHHHhCCChhhccCCCchHH-HHHhcccc-cCHHHHhcccCCCCCccc-
Confidence 10 0001112232221 11 2222211 000 0011000 00011111 333 4556888999864
Q ss_pred CCCcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC-CccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHH
Q 006042 516 WGICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG-GWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLI 594 (663)
Q Consensus 516 wg~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG-gWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~ 594 (663)
.+-.||++++. .+ -.++.+||.+..+.-| |-... | +.++....|.+-.|.
T Consensus 206 ----SPsaTAa~l~~---~~--------d~~~l~YL~~~v~k~~g~VP~~--------y------P~d~~e~L~lID~Lq 256 (727)
T 3pya_A 206 ----SPSSTAFAFMQ---TR--------DSNCLEYLRNAVKRFNGGVPNV--------F------PVDLFEHIWIVDRLQ 256 (727)
T ss_dssp ----BHHHHHHHHHH---HC--------CHHHHHHHHHHHHHTTTCCCSS--------C------CCHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHhc---CC--------CHHHHHHHHHHHHHcCCCCCCC--------C------CCcHHHHHHHHHHHH
Confidence 34478876653 22 1478889988776533 22211 1 366788899999999
Q ss_pred HcCCCCCCcHHHHHHHHHHHhcC
Q 006042 595 SAGQADRDPTPIHRGVKLLINSQ 617 (663)
Q Consensus 595 ~ag~~~~~~~~v~r~i~~L~~~Q 617 (663)
..|....-++.|+..++.+-+..
T Consensus 257 RLGIs~hFe~EI~~~L~~i~~~~ 279 (727)
T 3pya_A 257 RLGISRYFEEEIKECLDYVHRYW 279 (727)
T ss_dssp HTTCGGGGHHHHHHHHHHHHHTC
T ss_pred HcCCccccHHHHHHHHHHHHHHh
Confidence 99875322246888888887643
No 49
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=96.71 E-value=0.0015 Score=75.84 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcc---cCCCcccCCCCcchhHHHHHHHHHHHc-CCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCC
Q 006042 494 FIVKAVHYIEDEQT---ADGSWYGNWGICFIYGTCFALGGLQVA-GKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCP 569 (663)
Q Consensus 494 ~i~rav~~L~~~Q~---~DGsw~g~wg~~~~Y~T~~aL~aL~~~-g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~ 569 (663)
.+++-++-+++..+ .|| +.|.- .+..|.||++ ||.-. +. ...+.-.+.++||+++|.+|||||....
T Consensus 55 ~~~~Lie~VK~~l~~~~~~g-~~g~~-S~S~YDTAWV--Amvp~~~~--~~~p~Fp~~~~wil~nQ~~DGsWg~~~~--- 125 (817)
T 3sdr_A 55 RAEVLVSEIKAMLNPAITGD-GESMI-TPSAYDTAWV--ARVPAIDG--SARPQFPQTVDWILKNQLKDGSWGIQSH--- 125 (817)
T ss_dssp HHHHHHHHHHHHHHHHHTSS-CCCCC-CCCHHHHHHH--HTCBCTTS--CSSBSSHHHHHHHHHCCCTTSCCSCTTC---
T ss_pred HHHHHHHHHHHHhccccCCC-CCccc-ccCHHHhhHH--heeecCCC--CCCCCchHHHHHHHHccCCCCCCCCCCC---
Confidence 34444444444433 456 22221 3578999994 33321 11 1245567899999999999999996410
Q ss_pred CccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Q 006042 570 NKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQ 617 (663)
Q Consensus 570 ~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q 617 (663)
. -......+|.-+++||..-+.. ++.|+||+.||.++-
T Consensus 126 ~-------~~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 163 (817)
T 3sdr_A 126 F-------LLSDRLLATLSCVLVLLKWNVG---DLQVEQGIEFIKSNL 163 (817)
T ss_dssp C-------CHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred c-------chHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 0 0012367899999999986542 358999999999853
No 50
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=96.60 E-value=0.0021 Score=74.49 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcc--cCCCcccCCCCcchhHHHHHHHHHHHc-CCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCC
Q 006042 494 FIVKAVHYIEDEQT--ADGSWYGNWGICFIYGTCFALGGLQVA-GKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPN 570 (663)
Q Consensus 494 ~i~rav~~L~~~Q~--~DGsw~g~wg~~~~Y~T~~aL~aL~~~-g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~ 570 (663)
.++..++-+++..+ .+|.. .+..|.||++ ||.-. +. ...+.-.+.++||+++|.+|||||.... .
T Consensus 32 ~~~~~~~~i~~~~~~~~~g~~-----S~S~YDTAWV--amvp~~~~--~~~p~Fp~~~~wil~nQ~~DGsWg~~~~---~ 99 (785)
T 3s9v_A 32 RIETLISEIKNMFRCMGYGET-----NPSAYDTAWV--ARIPAVDG--SDNPHFPETVEWILQNQLKDGSWGEGFY---F 99 (785)
T ss_dssp HHHHHHHHHHHHHHHCSSCCC-----CCCHHHHHHH--TTSBCTTS--CSSBSSHHHHHHHHHCCCTTSCCSCSSS---C
T ss_pred HHHHHHHHHHHHhhcCCCCcc-----cCcHHHhhHH--hccccCCC--CCCCCchHHHHHHHHccCCCCCCCCCCC---C
Confidence 34444555554432 34432 3578999994 33311 11 1245567899999999999999996410 0
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Q 006042 571 KIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQ 617 (663)
Q Consensus 571 ~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q 617 (663)
.......+|.-+++||..-+.. ++.|+||+.||.++-
T Consensus 100 -------~~~d~l~~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 136 (785)
T 3s9v_A 100 -------LAYDRILATLACIITLTLWRTG---ETQVQKGIEFFRTQA 136 (785)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHHH
Confidence 0012367899999999986542 358999999998753
No 51
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=96.44 E-value=0.0031 Score=72.75 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcc--cCCCcccCCCCcchhHHHHHHHHHHHcC-CCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCC
Q 006042 494 FIVKAVHYIEDEQT--ADGSWYGNWGICFIYGTCFALGGLQVAG-KTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPN 570 (663)
Q Consensus 494 ~i~rav~~L~~~Q~--~DGsw~g~wg~~~~Y~T~~aL~aL~~~g-~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~ 570 (663)
.++..++-+++..+ .+|.. .+..|.||++ ||.-.- ......+.-.+.++||+++|.+|||||.... .
T Consensus 9 ~~~~~~~~i~~~~~~~~~g~~-----S~S~YDTAWV--amvp~~~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~---~ 78 (764)
T 3p5p_A 9 RADELVVKIKDMFNALGDGDI-----SPSAYDTAWV--ARLATISSDGSEKPRFPQALNWVFNNQLQDGSWGIESH---F 78 (764)
T ss_dssp HHHHHHHHHHHHHHTCSSCCC-----CCCHHHHHHH--HHCEEECTTSCEEESCHHHHHHHHHCCCTTSCCSCTTS---C
T ss_pred HHHHHHHHHHHHHhcCCCCcc-----cCcHHHHHHH--HhCccccCCCCCCCCChHHHHHHHHccCCCCCCCCCCC---c
Confidence 45555555655543 24432 3578999994 443211 0101234567899999999999999996410 0
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcC
Q 006042 571 KIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQ 617 (663)
Q Consensus 571 ~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q 617 (663)
. ......+|.-+++||..-+.. +..|+||+.||.++-
T Consensus 79 ~-------~~d~ll~TlAcvlAL~~w~~~---~~~i~~Gl~fl~~nl 115 (764)
T 3p5p_A 79 S-------LCDRLLNTTNSVIALSVWKTG---HSQVQQGAEFIAENL 115 (764)
T ss_dssp C-------HHHHHHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHHH
T ss_pred c-------hHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHH
Confidence 0 012367899999999986542 358999999999754
No 52
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=96.33 E-value=0.0086 Score=68.46 Aligned_cols=82 Identities=23% Similarity=0.387 Sum_probs=57.1
Q ss_pred CcchhHHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcC
Q 006042 518 ICFIYGTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAG 597 (663)
Q Consensus 518 ~~~~Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag 597 (663)
.+..|.||++ ||.-. . ...+.-.+.++||+++|.+|||||..... . ......+|.-+++||..-+
T Consensus 31 S~S~YDTAWV--Amvp~--~-~~~p~Fp~~~~wil~nQ~~DGsWG~~~~~---~-------~~D~ll~TLAcvlAL~~w~ 95 (727)
T 3pya_A 31 TISAYDTAWV--ALIDA--G-DKTPAFPSAVKWIAENQLSDGSWGDAYLF---S-------YHDRLINTLACVVALRSWN 95 (727)
T ss_dssp CCCHHHHHHH--HTCBC--S-SSSBSCHHHHHHHHHTCCTTSCCSCSSSC---C-------HHHHHHHHHHHHHHHHHTT
T ss_pred cCcHHHhHHH--hhccC--C-CCCCCCHHHHHHHHhcCCCCCCCCCCCCc---c-------hhhHHHHHHHHHHHHHHcc
Confidence 3578999994 44321 1 12344678999999999999999964100 0 0123678999999999865
Q ss_pred CCCCCcHHHHHHHHHHHhcC
Q 006042 598 QADRDPTPIHRGVKLLINSQ 617 (663)
Q Consensus 598 ~~~~~~~~v~r~i~~L~~~Q 617 (663)
.. ++.|+||+.||.++-
T Consensus 96 ~~---~~~i~rGl~fl~~nl 112 (727)
T 3pya_A 96 LF---PHQCNKGITFFRENI 112 (727)
T ss_dssp CC---HHHHHHHHHHHHHHG
T ss_pred CC---HHHHHHHHHHHHHHH
Confidence 32 358999999999753
No 53
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=96.25 E-value=0.13 Score=54.47 Aligned_cols=131 Identities=12% Similarity=0.021 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHcCCC-c-------CChHHHHHHHHHHHhhcCC-CCCccCCCcCCCCccccCCCCCCCcHHHHHHHHH
Q 006042 521 IYGTCFALGGLQVAGKT-Y-------NNCLAIRRAVDFLLNAQSD-DGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVL 591 (663)
Q Consensus 521 ~Y~T~~aL~aL~~~g~~-~-------~~~~~i~ra~~~Ll~~Q~~-DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALl 591 (663)
..+.++++.||..+-.. + ......++.+++|++.|.+ ||-|..... .+.. ++..-..+.||...-
T Consensus 212 aRg~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld---~~~~---~~~~~EsSatA~~ay 285 (373)
T 1nc5_A 212 ARSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVD---KGDR---SDNWLESSGSCLYMY 285 (373)
T ss_dssp HHHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTT---CTTS---TTCCBCHHHHHHHHH
T ss_pred cchHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecC---CCCC---CCCCccccHHHHHHH
Confidence 34778888888755321 1 1234567788999999997 999984211 1111 122344556665555
Q ss_pred HHHH---cCCCCC-CcHHHHHHHHHHHhc---CccCCCC--CCCcccccccccc--ccccC-----CccchHHHHHHHHH
Q 006042 592 SLIS---AGQADR-DPTPIHRGVKLLINS---QLENGDF--PQQEIMGVFMRNC--MLHYA-----EYRNIFPLRALAEY 655 (663)
Q Consensus 592 aL~~---ag~~~~-~~~~v~r~i~~L~~~---Q~~dG~w--~~~~~~g~f~~~~--~~~y~-----~y~~~~pl~AL~~y 655 (663)
+|+. .|..+. -.+.++|+.+.|+++ ..+||.. ......| .+.++ |++.+ .+-...-|+|+..+
T Consensus 286 ~l~~g~~~g~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~l~~~~~~~~~-~~~~~~yY~~~~~~~~d~~G~g~~lla~~e~ 364 (373)
T 1nc5_A 286 AIAKGINKGYLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDICVGT-SAGFYDYYVSRERSTNDLHGAGAFILAMTEL 364 (373)
T ss_dssp HHHHHHHHTSSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEECSC-CSCCHHHHHTSCEESSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCcHHHHHHHHHHHHHHHHhceeECCCCCEEecceEEeC-cCCCchhhhcccCCCCCcchHHHHHHHHHHH
Confidence 5543 354321 124789999999885 4677853 2222222 33332 33322 33556788888887
Q ss_pred HHh
Q 006042 656 RKR 658 (663)
Q Consensus 656 ~~~ 658 (663)
.+.
T Consensus 365 ~~~ 367 (373)
T 1nc5_A 365 EPL 367 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 54
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=95.89 E-value=0.17 Score=53.83 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHH
Q 006042 415 ERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENF 494 (663)
Q Consensus 415 ~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~ 494 (663)
+..++.++.+++.|.+ ||.|-..-.+.+ ++.+.+|.++.+-+.+.....++-.+++.+.
T Consensus 263 ~~~~~~a~~~~~~q~~-~G~W~~~~d~~~--------------------~y~EsSatA~~ay~ll~~~~~g~l~~~Y~~~ 321 (382)
T 3pmm_A 263 TVLDAQIAALAECQDD-SGLWHTLLDDPH--------------------SYLEASATAGFAYGILKAVRKRYVGQHYAGV 321 (382)
T ss_dssp HHHHHHHHHHHHHCCT-TSCEESBTTCTT--------------------SCEEHHHHHHHHHHHHHHHHTTSSCGGGHHH
T ss_pred HHHHHHHHHHHHcCCC-CCChhhccCCCC--------------------CCccccHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 5678899999999998 999853221110 2334444444443332211111222457789
Q ss_pred HHHHHHHHHHhcccCCCcccC-----CC-----------CcchhHHHHHHHHHHHc
Q 006042 495 IVKAVHYIEDEQTADGSWYGN-----WG-----------ICFIYGTCFALGGLQVA 534 (663)
Q Consensus 495 i~rav~~L~~~Q~~DGsw~g~-----wg-----------~~~~Y~T~~aL~aL~~~ 534 (663)
.+|+++-|.++.++||...+- -| ....||.+.+|.|+..+
T Consensus 322 a~ka~~~l~~~i~~dG~l~~v~~gt~~g~~~~~Y~~~p~~~~~~G~~~~lla~~e~ 377 (382)
T 3pmm_A 322 AEKAIRGIVQNISPQGELLQTSFGTGMGSDLDFYRQIPLTSMPYGQAMAILCLTEY 377 (382)
T ss_dssp HHHHHHHHHHTBCTTSCBCSCBCCCCCCSSHHHHHTCCBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCEeCeecCCCCCCChhhhhcccCCCCCccHHHHHHHHHHH
Confidence 999999999999999976431 11 11256888888777654
No 55
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=95.60 E-value=0.71 Score=48.71 Aligned_cols=128 Identities=15% Similarity=0.171 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhhhhCCCc--chHHHHHHHHHHHHHHHHhccc-CCCcccCC--C---C--cchhHHHHHHHHHHHc---C
Q 006042 469 TASAIEAFMLFKKLYPHH--RKKEIENFIVKAVHYIEDEQTA-DGSWYGNW--G---I--CFIYGTCFALGGLQVA---G 535 (663)
Q Consensus 469 Ta~~L~aL~~~~~~~~~~--~~~~~~~~i~rav~~L~~~Q~~-DGsw~g~w--g---~--~~~Y~T~~aL~aL~~~---g 535 (663)
.+-++.+|..+.+..|.. .++.+.+..++.+++|.+.|.+ ||.|.... + . ..+-+|+....+|... |
T Consensus 215 ~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q~~~dG~W~~~ld~~~~~~~~~EsSatA~~ay~l~~g~~~g 294 (373)
T 1nc5_A 215 IGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQDKETGLWYQIVDKGDRSDNWLESSGSCLYMYAIAKGINKG 294 (373)
T ss_dssp HHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTSCTTTSCCBSBTTCTTSTTCCBCHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhcCCCCCceeeecCCCCCCCCCccccHHHHHHHHHHHHHHCC
Confidence 345677777665543431 2355777889999999999997 99997311 1 1 1334677776776643 3
Q ss_pred CC-cCChHHHHHHHHHHHhh---cCCCCC--ccCCCcCCCCc--c-ccCCCCCCCcHHHHHHHHHHHHHc
Q 006042 536 KT-YNNCLAIRRAVDFLLNA---QSDDGG--WGESYKSCPNK--I-YTPLEGKRSTVVHTALAVLSLISA 596 (663)
Q Consensus 536 ~~-~~~~~~i~ra~~~Ll~~---Q~~DGg--Wg~~~~s~~~~--~-y~~~~g~~s~~~~Ta~ALlaL~~a 596 (663)
.. ....+.++|+.+.|.++ .++||- ++..+....+. + |...|-...++...+..|+|+.+.
T Consensus 295 ~l~~~Y~~~a~k~~~~l~~~~~~~~~dG~l~~~~~~~~~~~~~~~yY~~~~~~~~d~~G~g~~lla~~e~ 364 (373)
T 1nc5_A 295 YLDRAYETTLLKAYQGLIQHKTETSEDGAFLVKDICVGTSAGFYDYYVSRERSTNDLHGAGAFILAMTEL 364 (373)
T ss_dssp SSCGGGHHHHHHHHHHHHHHHEEECTTSCEEECCEECSCCSCCHHHHHTSCEESSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHhceeECCCCCEEecceEEeCcCCCchhhhcccCCCCCcchHHHHHHHHHHH
Confidence 22 13578899999999884 478883 34433222111 1 211111123466677888887653
No 56
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=95.55 E-value=0.37 Score=52.07 Aligned_cols=215 Identities=13% Similarity=0.092 Sum_probs=117.3
Q ss_pred CCchHHHHHHHHHHH---cCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCC-ccchHHH
Q 006042 318 SQTWDTALGLQALMA---CNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQV-SDCTAEG 393 (663)
Q Consensus 318 s~vwdTal~~~AL~~---ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd-~d~Ta~a 393 (663)
....|.++++.+|.+ ....+++.+.+.+..+||...+.+. ..|.|... .. ..... +|+--++
T Consensus 142 ~~LDD~g~~~~~Li~lY~~T~d~~yl~~a~~~ad~L~~~~pRt-~~Ggf~h~------------~~-~~~q~WiD~lyM~ 207 (445)
T 3k11_A 142 HALDDAGAVCTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRL-ADGTFARN------------RP-QRNTLWLDDMFMG 207 (445)
T ss_dssp CSGGGTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBC-TTCCBCBC------------SS-STTEEETHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCC-CCCceeec------------CC-CCCceEecchhhH
Confidence 346778877777754 3334567889999999999998654 22444311 00 01112 2333345
Q ss_pred HHHHHHhcCCCCcccCCCC---CHHHHHHHHHHHHhhccccCCCcc-ccccCCchhhhhhcCcccccccccccccccCcH
Q 006042 394 LKCVLQLSLMPPEIVGEKM---EPERLYDAVNFLLSLQDEKTGGLA-VWERAGASLLLEWLNPVEFLEDLIVEHTYVECT 469 (663)
Q Consensus 394 l~aL~~~~~~~~~~~~~~~---~~~~i~~a~~wLl~~Qn~~DGgw~-~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~T 469 (663)
+--|..++.. .+++. .++++.........++++++|-|- .+....+. .++ ..+ .-..
T Consensus 208 ~pfla~~~~~----tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~~~-----~~~-~~W---------aRGn 268 (445)
T 3k11_A 208 IPAVAQMSRY----DKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESSTD-----HPA-FCW---------ARAN 268 (445)
T ss_dssp HHHHHHHHHH----CGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTCSS-----CCC-CCB---------HHHH
T ss_pred HHHHHHHHHH----HCCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCCCC-----CCc-cee---------cccc
Confidence 5555544431 12211 122333333344446666466552 11111100 000 001 1124
Q ss_pred HHHHHHHHHhhhhCCC-c-chHHHHHHHHHHHHHHHHhcccCCCcccCCCC--c--chhHHHHHHHHHHH---cCCCc--
Q 006042 470 ASAIEAFMLFKKLYPH-H-RKKEIENFIVKAVHYIEDEQTADGSWYGNWGI--C--FIYGTCFALGGLQV---AGKTY-- 538 (663)
Q Consensus 470 a~~L~aL~~~~~~~~~-~-~~~~~~~~i~rav~~L~~~Q~~DGsw~g~wg~--~--~~Y~T~~aL~aL~~---~g~~~-- 538 (663)
+-++.+|...-+..|. + .+..+.+.+++.++.|++.|.+||.|.-.... + .+-+|+..+.||.. .|...
T Consensus 269 GW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~~Q~~~G~W~~vld~~~~y~EsSaTAmfaygllkgvr~G~Ld~~ 348 (445)
T 3k11_A 269 GWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTALQSGEGFWHQLLDCNDSYLETSATAIYVYCLAHAINKGWIDAI 348 (445)
T ss_dssp HHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHTTCCTTSCEESBTTCTTSCEEHHHHHHHHHHHHHHHHHTSSCHH
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHhCCCCCchhhccCCCCCCCCccHHHHHHHHHHHHHHcCCCCHH
Confidence 4555666655443332 1 34557788999999999999999999742211 1 33477776666643 34431
Q ss_pred CChHHHHHHHHHHHhhcCCCCCccCCC
Q 006042 539 NNCLAIRRAVDFLLNAQSDDGGWGESY 565 (663)
Q Consensus 539 ~~~~~i~ra~~~Ll~~Q~~DGgWg~~~ 565 (663)
...+.++|+.+.|.++-++||--+..|
T Consensus 349 ~Y~~~A~ka~~~L~~~i~~dG~l~~v~ 375 (445)
T 3k11_A 349 AYGPVAQLGWHAVAGKINEEGQVEGTC 375 (445)
T ss_dssp HHHHHHHHHHHHHHTTBCTTSCBCSCB
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEecee
Confidence 124678999999999989998655443
No 57
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=94.14 E-value=1.5 Score=46.57 Aligned_cols=150 Identities=10% Similarity=-0.020 Sum_probs=85.8
Q ss_pred CCchHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCC-----Cccc
Q 006042 318 SQTWDTALGLQALMACNI---ADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQ-----VSDC 389 (663)
Q Consensus 318 s~vwdTal~~~AL~~ag~---~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~p-----d~d~ 389 (663)
-.+|+++.++.+++.+.. .+++....+++++||.+.-...+ .|||.++. ..+.| .+.+
T Consensus 49 k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d~~-------------~Gg~~~~~-~dG~~~~~~~~lyd 114 (402)
T 3gt5_A 49 RHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRNPA-------------TGGYAWTL-CDDRVEDDTNHCYG 114 (402)
T ss_dssp EEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBCTT-------------TSCBCSEE-ETTEEEECCEEHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCccCC-------------CCcEEEEe-eCCCCCcCCcchHH
Confidence 346899999999987641 34466788999999987532210 14555554 23332 3567
Q ss_pred hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhh-ccccCCCcc-ccccCCchhhhhhcCcccccccccccccccC
Q 006042 390 TAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSL-QDEKTGGLA-VWERAGASLLLEWLNPVEFLEDLIVEHTYVE 467 (663)
Q Consensus 390 Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~-Qn~~DGgw~-~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~ 467 (663)
-|+++.|+..... .+++...+...+..++|.+. ..++.|++. .+..+ |. + ...+...
T Consensus 115 ~Af~i~al~~~~~-----tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~----~~--~----------~~~~~~n 173 (402)
T 3gt5_A 115 LAFVMLAYSCGLK-----VGIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQ----WN--F----------TRYRGQN 173 (402)
T ss_dssp HHHHHHHHHHHHH-----TTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTT----CC--B----------CSCEEHH
T ss_pred HHHHHHHHHHHHH-----hCChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCCC----CC--C----------CCCCCCC
Confidence 8999999887532 23444556667777777765 444235542 22221 10 0 0111222
Q ss_pred cHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHh
Q 006042 468 CTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDE 505 (663)
Q Consensus 468 ~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~ 505 (663)
..+++++++..+.....+ +...+.+++.++.+.+.
T Consensus 174 ~~m~l~eall~L~~~tgd---~~~~~~a~~l~~~~~~~ 208 (402)
T 3gt5_A 174 ANMHMCEAMLAAYEASGE---QRYLERALVLADRITRR 208 (402)
T ss_dssp HHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHH
Confidence 345566666665543222 34566777888887765
No 58
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=94.10 E-value=1.1 Score=51.47 Aligned_cols=254 Identities=16% Similarity=0.132 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHh
Q 006042 321 WDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQL 400 (663)
Q Consensus 321 wdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~ 400 (663)
-|++++++||...|.+ +..++.++||.+.|..+ |.+...+. ..|=++ .+.+-.|.|+..+.++..+
T Consensus 343 RD~~~~~~al~~~G~~----~~a~~~l~~l~~~q~~~---G~~~~~~~---~~G~p~----w~~~Q~D~~g~~l~~~~~~ 408 (684)
T 1lf6_A 343 RDLYHVANAFIAAGDV----DSANRSLDYLAKVVKDN---GMIPQNTW---ISGKPY----WTGIQLDEQADPIILSYRL 408 (684)
T ss_dssp HHHHHHHHHHHHHTCH----HHHHHHHHHHHHHHHHH---SSCCSCBC---TTSCBC----CCCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCCH----HHHHHHHHHHHhhcCCC---CCccccee---CCCCcc----cCCccccchHHHHHHHHHH
Confidence 5799999999998853 45788999999999765 66532221 112122 1224578999999887765
Q ss_pred cCCCCcccCCCCCHHH-HHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHH---
Q 006042 401 SLMPPEIVGEKMEPER-LYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAF--- 476 (663)
Q Consensus 401 ~~~~~~~~~~~~~~~~-i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL--- 476 (663)
.. .+ .. +. ++++++|+.+.... -+.+-++...+ .++...+.+..+|
T Consensus 409 ~~-----~g--~~-~~~v~~al~~i~~~~~~--~~~g~WE~~~g--------------------~~~~t~~~~~~aL~~~ 458 (684)
T 1lf6_A 409 KR-----YD--LY-DSLVKPLADFIIKIGPK--TGQERWEEIGG--------------------YSPATMAAEVAGLTCA 458 (684)
T ss_dssp TC-----GG--GT-TTTHHHHHHHHHHHCSS--BSSCTTSSCCB--------------------BCHHHHHHHHHHHHHH
T ss_pred HH-----cC--ch-HHHHHHHHHHHHHhCCC--CCcccccccCC--------------------cCHHHHHHHHHHHHHH
Confidence 43 12 23 45 99999999987643 22222222111 0122233333333
Q ss_pred HHhhhhCCCc-chHHHHHHHHHHHHHHHH-hcccCC-----CcccCC----CCc--------------chhHH--HHHHH
Q 006042 477 MLFKKLYPHH-RKKEIENFIVKAVHYIED-EQTADG-----SWYGNW----GIC--------------FIYGT--CFALG 529 (663)
Q Consensus 477 ~~~~~~~~~~-~~~~~~~~i~rav~~L~~-~Q~~DG-----sw~g~w----g~~--------------~~Y~T--~~aL~ 529 (663)
+.+.+...+. ..+......++-.+.|.+ ..+++| +|+.+- +.. +.-.+ + ++.
T Consensus 459 a~lA~~~g~~~~a~~~~~~a~~i~~~i~~~~w~~~~~~g~~~~f~r~~~d~~~~~~~~~~~~~~~~~~~~~~~lDa-s~l 537 (684)
T 1lf6_A 459 AYIAEQNKDYESAQKYQEKADNWQKLIDNLTYTENGPLGNGQYYIRIAGLSDPDADFMINIANGGGVYDQKEIVDP-SFL 537 (684)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHEESSCSSTTSCEECSCBSSSCTTSCCEEEETTTTEEEEGGGCCCG-GGG
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCCCcccccCCeeEEEeccCCCccccccccccccccCCCCCcEeH-HHh
Confidence 3332221111 111122222222222322 344552 232211 000 00000 1 222
Q ss_pred HHHHcCCCcCChHHHHHHHHHHHhhcCCC---C-CccCCCc-CCCC----ccccCCCC-CCCcHHHHHHHHHHHHHcCCC
Q 006042 530 GLQVAGKTYNNCLAIRRAVDFLLNAQSDD---G-GWGESYK-SCPN----KIYTPLEG-KRSTVVHTALAVLSLISAGQA 599 (663)
Q Consensus 530 aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D---G-gWg~~~~-s~~~----~~y~~~~g-~~s~~~~Ta~ALlaL~~ag~~ 599 (663)
.+..+|.....++.+.++++-+.+.-..| | +|..... .+.. ..|.. .| +..-+..|+|..++|...|.
T Consensus 538 ~~~~~G~~~~~dpr~~~Tl~~i~~~L~~~~~~G~~~~RY~~d~y~~~~~G~~f~~-~g~g~~W~~~t~~~a~al~~~G~- 615 (684)
T 1lf6_A 538 ELVRLGVKSADDPKILNTLKVVDSTIKVDTPKGPSWYRYNHDGYGEPSKTELYHG-AGKGRLWPLLTGERGMYEIAAGK- 615 (684)
T ss_dssp HHHHTTSSCTTCHHHHHHHHHHHHHSEEEETTEEEECSSTTCCCSCSBTTBCCSS-SSCCCBBHHHHHHHHHHHHHTTC-
T ss_pred HHHhcCCcCCCCHHHHHHHHHHHHHhccCCCCCCeEeccCCCCCCcccCCCcccc-CCCCCchHHHHHHHHHHHHHhCh-
Confidence 23345654335678888888887655333 4 3432111 1110 00100 01 23446789999999999886
Q ss_pred CCCcHHHHHHHHHHHhcCccCCCCCCC
Q 006042 600 DRDPTPIHRGVKLLINSQLENGDFPQQ 626 (663)
Q Consensus 600 ~~~~~~v~r~i~~L~~~Q~~dG~w~~~ 626 (663)
...+-+++|....+..|-++|+
T Consensus 616 -----~A~~~~~~l~~~a~~~gllpE~ 637 (684)
T 1lf6_A 616 -----DATPYVKAMEKFANEGGIISEQ 637 (684)
T ss_dssp -----CCHHHHHHHHHHSCTTSCCCSC
T ss_pred -----HHHHHHHHHHHhcccCCccCee
Confidence 1456778888877777888765
No 59
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=93.87 E-value=2.4 Score=44.48 Aligned_cols=243 Identities=11% Similarity=0.052 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhhheecCCCcee--e-------cCCCCchHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHhhcccCCC
Q 006042 292 AFKKHLNRIADYIWLGEDGMKV--Q-------TFGSQTWDTALGLQALMACNI---ADEVESVLGKGHDYLKKAQIRDNP 359 (663)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~g~~~--~-------~~~s~vwdTal~~~AL~~ag~---~~~~~~~l~ka~~wL~~~Q~~~~~ 359 (663)
..+++++.|.+.++ +++|... . ......++.++++.||.+... .+++....+++.++|......+
T Consensus 78 ~A~~~~~~l~~~~~-~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~~~~~d~-- 154 (388)
T 2gz6_A 78 IARNGAKFLAQHGR-DDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVLRRKDNP-- 154 (388)
T ss_dssp HHHHHHHHHHHHSB-CTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHhcC-CCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCC--
Confidence 45666677777655 3344221 1 113467999999999987321 2234455666777777654322
Q ss_pred CCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhh-ccccCCCcccc
Q 006042 360 VGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSL-QDEKTGGLAVW 438 (663)
Q Consensus 360 ~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~-Qn~~DGgw~~~ 438 (663)
.|-|...++ + +. .....++.+.++.+++.+... .+++...+...+.++.+... .++++|++..+
T Consensus 155 ~g~~~~~~~----~-~~------~~~~~~~~~~~~~all~l~~~----t~d~~~~~~A~~~~~~~~~~~~~~~~g~~~e~ 219 (388)
T 2gz6_A 155 KGKYTKTYP----G-TR------PMKALAVPMILANLTLEMEWL----LPQETLENVLAATVQEVMGDFLDQEQGLMYEN 219 (388)
T ss_dssp ---------------CC------CCEETHHHHHHHHHHHHTGGG----SCHHHHHHHHHHHHHHHHHTTEETTTTEECSE
T ss_pred CcccCcccC----C-CC------CCCCCCHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 133321111 0 00 112245666777777776542 12222334555666666554 23324554322
Q ss_pred ccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHh-cccC-CCccc--
Q 006042 439 ERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDE-QTAD-GSWYG-- 514 (663)
Q Consensus 439 ~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~-Q~~D-Gsw~g-- 514 (663)
-.. .| +.+ +.+ .++ ...|++. ..+...|..+.....+ +...+..++.++++.+. .+++ |++..
T Consensus 220 ~~~---~w-~~~-~~~-~~~-~~~pgh~---~e~a~lL~~~~~~tgd---~~~~~~A~~~~~~~~~~g~d~~~Gg~~~~~ 286 (388)
T 2gz6_A 220 VAP---DG-SHI-DCF-EGR-LINPGHG---IEAMWFIMDIARRKND---SKTINQAVDVVLNILNFAWDNEYGGLYYFM 286 (388)
T ss_dssp ECT---TS-CCC-CST-TTT-EECHHHH---HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHBCTTTCSBCSCE
T ss_pred ECC---CC-CCC-CCc-ccC-cCCCCHH---HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhccCCCCCEEEee
Confidence 111 11 000 000 001 1111111 1122223333322121 23445566677777543 4555 76642
Q ss_pred CC-CC---------cchhHHHHHHHHHHHc----CCCcCChHHHHHHHHHHHhhc--CCCCCccCCCc
Q 006042 515 NW-GI---------CFIYGTCFALGGLQVA----GKTYNNCLAIRRAVDFLLNAQ--SDDGGWGESYK 566 (663)
Q Consensus 515 ~w-g~---------~~~Y~T~~aL~aL~~~----g~~~~~~~~i~ra~~~Ll~~Q--~~DGgWg~~~~ 566 (663)
.+ |. ...++.+.++.|+..+ |.. ..-+..++..+|+.++. .++|+|-....
T Consensus 287 ~~~g~~~~~~~~~~~~~W~qae~i~a~~~ly~~tgd~-~yl~~a~~~~~~~~~~~~D~~~G~w~~~l~ 353 (388)
T 2gz6_A 287 DAAGHPPQQLEWDQKLWWVHLESLVALAMGYRLTGRD-ACWAWYQKMHDYSWQHFADPEYGEWFGYLN 353 (388)
T ss_dssp ETTSCCCSCTTTTCEEHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHBCTTTSSBCCEEC
T ss_pred cCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHhCcCCCCCceEEeeC
Confidence 11 21 1234556666666543 332 12445677888887765 35899976543
No 60
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=93.36 E-value=0.35 Score=51.13 Aligned_cols=127 Identities=17% Similarity=0.345 Sum_probs=76.3
Q ss_pred HHHHHHHHH-HhhccccCCCc-cccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHH
Q 006042 416 RLYDAVNFL-LSLQDEKTGGL-AVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIEN 493 (663)
Q Consensus 416 ~i~~a~~wL-l~~Qn~~DGgw-~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~ 493 (663)
-.++.+.|. ...+.. .||| ..+..+.. . + |.| -.....+..+.+++.+.... ...+...+
T Consensus 16 l~~~~l~fw~~~~~D~-~GGf~~~~~~d~~--~---~-~~e---------K~l~~nar~i~~~a~a~~~~--~~~~~~~~ 77 (388)
T 2gz6_A 16 LLNDVLPFWENHSLDS-EGGYFTCLDRQGK--V---Y-DTD---------KFIWLQNRQVWTFSMLCNQL--EKRENWLK 77 (388)
T ss_dssp HHHTHHHHHHHHCBCT-TSSBCCEEBTTSC--E---E-ECC---------EEHHHHHHHHHHHHHHHHHT--CCCHHHHH
T ss_pred HHHhHHHHHHhcCCCC-CCCEEeEECCCCC--c---C-Ccc---------hhHHHHHHHHHHHHHHHHHh--cCCHHHHH
Confidence 345677777 557777 8895 66654332 1 0 111 13456888888888765431 11245677
Q ss_pred HHHHHHHHHHHh-cccCCCcccCC---C-----CcchhHHHHHHHHHHHc----CCCcCChHHHHHHHHHHHhhcCC-CC
Q 006042 494 FIVKAVHYIEDE-QTADGSWYGNW---G-----ICFIYGTCFALGGLQVA----GKTYNNCLAIRRAVDFLLNAQSD-DG 559 (663)
Q Consensus 494 ~i~rav~~L~~~-Q~~DGsw~g~w---g-----~~~~Y~T~~aL~aL~~~----g~~~~~~~~i~ra~~~Ll~~Q~~-DG 559 (663)
.++++++||++. ++++|+|+... | ....|+-++++.||+.+ |.+ ...+...+..++++++... +|
T Consensus 78 ~A~~~~~~l~~~~~~~~Gg~~~~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~-~~l~~A~~~~~~i~~~~~d~~g 156 (388)
T 2gz6_A 78 IARNGAKFLAQHGRDDEGNWYFALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEE-WAKDVAMQAYNNVLRRKDNPKG 156 (388)
T ss_dssp HHHHHHHHHHHHSBCTTSCBCSEECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhcCCCc
Confidence 899999999998 67789987421 1 24678888899988764 322 1234556667788777643 34
Q ss_pred Cc
Q 006042 560 GW 561 (663)
Q Consensus 560 gW 561 (663)
.|
T Consensus 157 ~~ 158 (388)
T 2gz6_A 157 KY 158 (388)
T ss_dssp --
T ss_pred cc
Confidence 44
No 61
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=93.29 E-value=1.2 Score=53.11 Aligned_cols=91 Identities=18% Similarity=0.113 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHHHHH
Q 006042 320 TWDTALGLQALMACNIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKCVLQ 399 (663)
Q Consensus 320 vwdTal~~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~aL~~ 399 (663)
+.|++++++||...|.. +..++.++||.+.|... .|.+..+|. .+|-++ .+-+-.|.|+..+.++..
T Consensus 331 ~RDaa~t~~all~~G~~----e~A~~~l~~L~~~Q~~~--~G~~~~~y~---i~G~~~----w~~~Q~D~~g~~l~~~~~ 397 (1020)
T 1ulv_A 331 ARDMYQSVTALLAAGDE----EAAARGVEWLFTYQQQP--DGHFPQTSR---VDGTIG----QNGIQLDETAFPILLANQ 397 (1020)
T ss_dssp HHHHHHHHHHHHHHTCH----HHHHHHHHHHHHHTCCT--TSCCCSCBC---TTSCBC----CCCCBTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHcCCH----HHHHHHHHHHHHHhcCC--CCCeeeEEe---cCCCcC----CCCccCccchHHHHHHHH
Confidence 46899999999999853 45788999999999422 277765553 122111 111356999999998887
Q ss_pred hcCCCCcccCCCCCHHHHHHHHHHHHhhc
Q 006042 400 LSLMPPEIVGEKMEPERLYDAVNFLLSLQ 428 (663)
Q Consensus 400 ~~~~~~~~~~~~~~~~~i~~a~~wLl~~Q 428 (663)
+.+. +....++.++++++|+.+..
T Consensus 398 ~~~~-----d~~~w~~~v~~al~~i~~~g 421 (1020)
T 1ulv_A 398 IGRT-----DAGFYRNELKPAADYLVAAG 421 (1020)
T ss_dssp HTCC-----CHHHHHHTHHHHHHHHHHHC
T ss_pred HHhc-----CHHHHHHHHHHHHHHHHHhC
Confidence 6531 11112237899999998875
No 62
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=91.05 E-value=7.5 Score=43.57 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=56.5
Q ss_pred chHHHHHHHHHH----HcCCCCchHHHHHHHHHHHHh---hcccCCCCCCcccc----CCCCCCCcccCccCCCCCCCcc
Q 006042 320 TWDTALGLQALM----ACNIADEVESVLGKGHDYLKK---AQIRDNPVGDYKGN----FRHFSKGAWTFSDQDHGWQVSD 388 (663)
Q Consensus 320 vwdTal~~~AL~----~ag~~~~~~~~l~ka~~wL~~---~Q~~~~~~G~~~~~----~~~~~~GgW~fs~~~~~~pd~d 388 (663)
+-|.+++++||. .+|. .+..+++.+||.. .|...+..|+|... -+.....|-.|. ..-+.|-.|
T Consensus 52 ~RDaa~t~~aL~~~~~~~G~----~~~a~~~~~~l~~~~~lQ~~y~~~G~~~~~~~l~E~~~~ldG~~~~-~~w~~~Q~D 126 (599)
T 2vn4_A 52 TRDSALVFKNLIDRFTETYD----AGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKPFT-GNWGRPQRD 126 (599)
T ss_dssp HHHHHHHHHHHHHHHHHSBC----HHHHHHHHHHHHHHHHHHHCCBTTBCSTTSGGGGCCEECTTSCBCC-SCCSCCCTH
T ss_pred hhhHHHHHHHHHHHHHhCCC----HHHHHHHHHHHhcccceeeeeCCCCCcccccCcCceEEecCCcccc-CcCCCeecc
Confidence 359999999999 7775 3456788899975 56443445766310 000011222220 011224556
Q ss_pred c-----hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccc
Q 006042 389 C-----TAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDE 430 (663)
Q Consensus 389 ~-----Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~ 430 (663)
- |+..+.++..........+. ...-+.++++++|+....+.
T Consensus 127 ~~glr~~~~~~~~~~~~~~g~~~~~~-~~~w~~v~~~l~~v~~~w~~ 172 (599)
T 2vn4_A 127 GPALRAIALIGYSKWLINNNYQSTVS-NVIWPIVRNDLNYVAQYWNQ 172 (599)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHH-HHTHHHHHHHHHHHHHHTTS
T ss_pred ccchhHHHHHHHHHHHHHhCCccccc-HHHHHHHHHHHHHHHHhCCC
Confidence 6 66666555432211100000 01246899999999998775
No 63
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=91.00 E-value=4.6 Score=44.16 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=55.5
Q ss_pred chHHHHHHHHHHHcCCCC----chHHHHHHHHHHHHhhcccCCCCCCccc---------cCCCCCCCcccCccCCCCCCC
Q 006042 320 TWDTALGLQALMACNIAD----EVESVLGKGHDYLKKAQIRDNPVGDYKG---------NFRHFSKGAWTFSDQDHGWQV 386 (663)
Q Consensus 320 vwdTal~~~AL~~ag~~~----~~~~~l~ka~~wL~~~Q~~~~~~G~~~~---------~~~~~~~GgW~fs~~~~~~pd 386 (663)
+-|.++++.||...|... +..+.+++-++|....|...++.|.|.. +|. ..|-.|.. .-+.|-
T Consensus 68 ~RDaa~t~~aL~~~g~~~~~~~~l~~~a~~y~~~~~~lq~~~~~~G~~~~~~~~glgep~y~---vdG~~~~~-~w~~~Q 143 (492)
T 2fba_A 68 TRDSAITFLTVLSELEDNNFNTTLAKAVEYYINTSYNLQRTSNPSGSFDDENHKGLGEPKFN---TDGSAYTG-AWGRPQ 143 (492)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTSCBTTBCTTSGGGGGGGCCEEC---TTSCBCCS-CCSCCB
T ss_pred cchHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHhcccCCCCCcCcccccccCceeec---cCCCcCCc-ccCCcc
Confidence 359999999999887521 1234455555652234432223477762 221 12222211 112256
Q ss_pred ccchHHHHHHHHHhc----CCCC------cccC------CCCCHHHHHHHHHHHHhhccc
Q 006042 387 SDCTAEGLKCVLQLS----LMPP------EIVG------EKMEPERLYDAVNFLLSLQDE 430 (663)
Q Consensus 387 ~d~Ta~al~aL~~~~----~~~~------~~~~------~~~~~~~i~~a~~wLl~~Qn~ 430 (663)
.|-++..+.++.... .... ++++ .....+.+++.++|+...-+.
T Consensus 144 ~D~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w~~ 203 (492)
T 2fba_A 144 NDGPALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWDS 203 (492)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTTS
T ss_pred ccchhHHHHHHHHHHHHhhccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhcCC
Confidence 788999888776421 0000 0000 001135788999999887653
No 64
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=89.47 E-value=3.6 Score=43.33 Aligned_cols=220 Identities=15% Similarity=0.138 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHHHhhccccC-CCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchH
Q 006042 411 KMEPERLYDAVNFLLSLQDEKT-GGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKK 489 (663)
Q Consensus 411 ~~~~~~i~~a~~wLl~~Qn~~D-Ggw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~ 489 (663)
+...+.+.++.++|.+.=++ . |+...+....+..+ .+. -.+|+-.. |.+|...++...+ +
T Consensus 107 ~~~~~~~~~aA~~L~~r~~~-~~g~i~sw~~~~~~~~---------~~~-----~iID~mmn-i~~L~~A~~~~gd---~ 167 (377)
T 2ahf_A 107 ESARKLALDAADVLMRRWRA-DAGIIQAWGPKGDPEN---------GGR-----IIIDCLLN-LPLLLWAGEQTGD---P 167 (377)
T ss_dssp HHHHHHHHHHHHHHHTTEET-TTTEECCBSSTTCTTT---------TTE-----EEGGGGGG-HHHHHHHHHHHCC---T
T ss_pred HHHHHHHHHHHHHHHHhCCC-CCCeEEeccCCCCCCC---------Cce-----EEechHHH-HHHHHHHHHHhCC---H
Confidence 34567888999999988777 6 44444432111000 000 12333333 6777765543221 2
Q ss_pred HHHHHHHHHHHHHHHhc-ccCCCcc---------cCC-------CCc----chhHHHHHHHHHHHcCCCc---CChHHHH
Q 006042 490 EIENFIVKAVHYIEDEQ-TADGSWY---------GNW-------GIC----FIYGTCFALGGLQVAGKTY---NNCLAIR 545 (663)
Q Consensus 490 ~~~~~i~rav~~L~~~Q-~~DGsw~---------g~w-------g~~----~~Y~T~~aL~aL~~~g~~~---~~~~~i~ 545 (663)
++.+...+.++++++.+ ++||+.. |.. |.. ..-|.++++.|+..+-+.. ..-+...
T Consensus 168 ~y~~~A~~~a~~~l~~~~r~dgs~~h~~~~D~~tG~~~~~~t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d~~yL~~A~ 247 (377)
T 2ahf_A 168 EYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAK 247 (377)
T ss_dssp HHHHHHHHHHHHHHHHTBBTTSCBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCeeeCCCcCCcCCcchhHHHHHHHHHHHHHHHHHHCChHHHHHHH
Confidence 35567778888888765 5556552 111 211 1236678888887542211 1123556
Q ss_pred HHHHHHHhhcCCCCCc-cCCCcCCCCccccCCCCCCCcHHHH---HHHHHHHHHcCCCC---C--CcHHHHHHHHHHHhc
Q 006042 546 RAVDFLLNAQSDDGGW-GESYKSCPNKIYTPLEGKRSTVVHT---ALAVLSLISAGQAD---R--DPTPIHRGVKLLINS 616 (663)
Q Consensus 546 ra~~~Ll~~Q~~DGgW-g~~~~s~~~~~y~~~~g~~s~~~~T---a~ALlaL~~ag~~~---~--~~~~v~r~i~~L~~~ 616 (663)
+..++++++..+||++ -.... .. ++...-+++.+ |++|+-|....... . -.+..++.++-|.+.
T Consensus 248 ~la~~~l~~~~~d~~pywd~~~--~~-----~~~~~~d~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~ 320 (377)
T 2ahf_A 248 RMARHFLARVPEDGVVYWDFEV--PQ-----EPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDG 320 (377)
T ss_dssp HHHHHHHTTCCTTSSCBSBTTS--CC-----CTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHhCCcccccCC--Cc-----cCCCccCCCHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHH
Confidence 6788999998667872 21111 00 11222234444 45555555442100 0 013456777777764
Q ss_pred Cc------cCCCCCCCcccccccc-ccccccCCccchHHHHHHHHHHHh
Q 006042 617 QL------ENGDFPQQEIMGVFMR-NCMLHYAEYRNIFPLRALAEYRKR 658 (663)
Q Consensus 617 Q~------~dG~w~~~~~~g~f~~-~~~~~y~~y~~~~pl~AL~~y~~~ 658 (663)
-. .+|-.... ++..|. .-...--.|-.+|=+-||.||.+.
T Consensus 321 y~~~~~~~~~g~L~h~--~~~~~~~~~~d~~~~ygDy~~~Eal~r~~~~ 367 (377)
T 2ahf_A 321 YAERDDGEAEGFIRRG--SYHVRGGISPDDYTIWGDYYYLEALLRLERG 367 (377)
T ss_dssp TBCCCCSSCCCSBSCB--CSBTTTTBSSSBCBHHHHHHHHHHHHHHHHC
T ss_pred HhcCCCCCCCeEEecc--cccCCCCCCCCcCccHHHHHHHHHHHHHHcC
Confidence 32 22222221 111221 113334557778999999999774
No 65
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=88.81 E-value=8.7 Score=40.87 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=84.9
Q ss_pred CCchHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCC----CCccchH
Q 006042 318 SQTWDTALGLQALMACNIA--DEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGW----QVSDCTA 391 (663)
Q Consensus 318 s~vwdTal~~~AL~~ag~~--~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~----pd~d~Ta 391 (663)
-.+|++++++.+++.+... +++....+++++||.+. ..+.. .|||.++....+. -...+-|
T Consensus 48 k~~~~nar~i~~~a~a~~~g~~~~l~~A~~~~~fl~~~-~~D~~------------~GG~~~s~d~dg~~~~~k~lyd~A 114 (421)
T 2zbl_A 48 THLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGA-LRDKK------------YGGWYACVNDQGVVDASKQGYQHF 114 (421)
T ss_dssp EEHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTTT-TBCTT------------TSSBCSEEETTEEEECCEEHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHh-ccCcC------------CCeEEEEeCCCCCcCCchhHHHHH
Confidence 3468999999999876432 34567889999999987 33311 1344444211121 2345678
Q ss_pred HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhh-ccccCCCccc-cccCCchhhhhhcCcccccccccccccccCcH
Q 006042 392 EGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSL-QDEKTGGLAV-WERAGASLLLEWLNPVEFLEDLIVEHTYVECT 469 (663)
Q Consensus 392 ~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~-Qn~~DGgw~~-~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~T 469 (663)
+++.++..... .+++...+...+.++++.+. ..+++|||-. .+.+.. + ..++......
T Consensus 115 f~i~al~~~~~-----tg~~~~l~~a~~~~~~l~~~~~d~~~Ggf~~~~d~d~~--------~-------~~~~~~~n~~ 174 (421)
T 2zbl_A 115 FALLGAASAVT-----TGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFS--------Q-------TEDYRGGNAN 174 (421)
T ss_dssp HHHHHHHHHHT-----TTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTSC--------S-------BCSCEEHHHH
T ss_pred HHHHHHHHHHH-----hCCccHHHHHHHHHHHHHHHhccCCCCCeeeeecCCCC--------c-------ccccCCCcHH
Confidence 88888877321 23445567778888888774 3332677632 222110 0 0011112222
Q ss_pred HHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhc
Q 006042 470 ASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQ 506 (663)
Q Consensus 470 a~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q 506 (663)
++.+++|..+.....+ ++..+..++.++++.+..
T Consensus 175 m~~~~al~~l~~~tgd---~~~~~~A~~~~~~~~~~~ 208 (421)
T 2zbl_A 175 MHAVEAFLIVYDVTHD---KKWLDRALRIASVIIHDV 208 (421)
T ss_dssp HHHHHHHHHHHHTTCC---THHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHhhCC---HHHHHHHHHHHHHHHHHh
Confidence 3456677666544322 234456677888877654
No 66
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=87.80 E-value=3.3 Score=43.92 Aligned_cols=130 Identities=12% Similarity=0.168 Sum_probs=77.5
Q ss_pred HHHHHHHHHHH-hhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHH
Q 006042 415 ERLYDAVNFLL-SLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIEN 493 (663)
Q Consensus 415 ~~i~~a~~wLl-~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~ 493 (663)
..+++.+.|.. ..+.+ +|||..+-...+ .. ...+. -....++..|-+++....... .+...+
T Consensus 13 ~~~~~~l~fw~~~~~D~-~GGf~~~l~~dg-~~------~~~~~------k~l~~n~r~i~~~a~a~~~~g---~~~~l~ 75 (402)
T 3gt5_A 13 THISDTMAFYHPRCIDS-AGGFFHYFRDDG-SI------YNATH------RHLVSSTRFVFNYAMAYLQFG---TAEYLD 75 (402)
T ss_dssp HHHHHHHHHHTTTTBCT-TSSBCCEECTTS-CE------EESSE------EEHHHHHHHHHHHHHHHHHHC---CHHHHH
T ss_pred HHHHHHHHHHHhcCCCC-CcCeeeEECCCC-CC------CCCCc------hhHHHHHHHHHHHHHHHHhhC---ChHHHH
Confidence 34577788764 56776 999964322111 11 00011 124467888888887654311 234667
Q ss_pred HHHHHHHHHHHh-cccC-CCcccCC--C-----CcchhHHHHHHHHHHHc---CCCcCChHHHHHHHHHHHhhc-CC-CC
Q 006042 494 FIVKAVHYIEDE-QTAD-GSWYGNW--G-----ICFIYGTCFALGGLQVA---GKTYNNCLAIRRAVDFLLNAQ-SD-DG 559 (663)
Q Consensus 494 ~i~rav~~L~~~-Q~~D-Gsw~g~w--g-----~~~~Y~T~~aL~aL~~~---g~~~~~~~~i~ra~~~Ll~~Q-~~-DG 559 (663)
..+++++||.+. .+++ |+|+-+. | ..++|.-++++.||+.+ |.+ ...+.+++..++|.+.- .+ .|
T Consensus 76 ~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~Af~i~al~~~~~tgd~-~~l~~A~~l~~~i~~~f~d~~~G 154 (402)
T 3gt5_A 76 AVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLAFVMLAYSCGLKVGIK-QAREWMDETWCLLERHFWDAEYG 154 (402)
T ss_dssp HHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHTEETTTT
T ss_pred HHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHHHHHHHHHHHHHhCCh-hHHHHHHHHHHHHHHHhcCCcCC
Confidence 889999999885 4455 8886321 1 24678888999888764 332 13455666677777763 33 35
Q ss_pred Ccc
Q 006042 560 GWG 562 (663)
Q Consensus 560 gWg 562 (663)
++.
T Consensus 155 ~~~ 157 (402)
T 3gt5_A 155 LYK 157 (402)
T ss_dssp EEC
T ss_pred Cch
Confidence 554
No 67
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=87.59 E-value=13 Score=39.33 Aligned_cols=218 Identities=14% Similarity=0.151 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHHhhccccCCC-ccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHH
Q 006042 412 MEPERLYDAVNFLLSLQDEKTGG-LAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKE 490 (663)
Q Consensus 412 ~~~~~i~~a~~wLl~~Qn~~DGg-w~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~ 490 (663)
...+.+.++.++|.+.=++ .|| +..+....+. .+.+...-+..-|.+|..+++... +++
T Consensus 134 ~~~~~~~~aA~~L~~r~~~-~~g~iqsw~~~~~~----------------~~~~~iID~~mni~~L~~A~~~~g---d~~ 193 (397)
T 2zzr_A 134 KALEATIKAADKLMERYQE-KGGFIQAWGELGYK----------------EHYRLIIDCLLNIQLLFFAYEQTG---DEK 193 (397)
T ss_dssp HHHHHHHHHHHHHHTTEET-TTTEECCSSSTTCG----------------GGCEEETTHHHHTHHHHHHHHHHC---CHH
T ss_pred HHHHHHHHHHHHHHHHhCc-CCCEEEecccCCCC----------------CCCceeechHhHHHHHHHHHHHhC---CHH
Confidence 4667889999999987777 655 4444311100 011222334456778877665422 234
Q ss_pred HHHHHHHHHHHHHHhc-ccCCCccc----------------CCCCcchh----HHHHHHHHHHHcCCCcCCh---HHHHH
Q 006042 491 IENFIVKAVHYIEDEQ-TADGSWYG----------------NWGICFIY----GTCFALGGLQVAGKTYNNC---LAIRR 546 (663)
Q Consensus 491 ~~~~i~rav~~L~~~Q-~~DGsw~g----------------~wg~~~~Y----~T~~aL~aL~~~g~~~~~~---~~i~r 546 (663)
+.+...+.++++.+.. ++||+.+- ..|...-| |.++++.|+..+-+...+. +...+
T Consensus 194 y~~~A~~ha~~~l~~~~r~dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d~~yL~~A~~ 273 (397)
T 2zzr_A 194 YRQVAVNHFYASANNVVRDDSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARGQAWGIYGIPLSYRKMKDYQQIILFKG 273 (397)
T ss_dssp HHHHHHHHHHHHHHHTBCTTSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCCCCeEEEEEeeCCCCCcccCCcccccCcchhhHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 5556666777777765 44454421 11221222 6788888887642111122 33455
Q ss_pred HHHHHHhhcCCCCC-ccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCC-C---CCc----HHHHHHHHHHHhcC
Q 006042 547 AVDFLLNAQSDDGG-WGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQA-D---RDP----TPIHRGVKLLINSQ 617 (663)
Q Consensus 547 a~~~Ll~~Q~~DGg-Wg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~-~---~~~----~~v~r~i~~L~~~Q 617 (663)
..++++++-..||+ +-....... +...-+++.+|-+..+|+.+... + ... +..++.++-|.+.-
T Consensus 274 la~~~l~~~~~d~~pywdt~~~~~-------~~~~~D~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y 346 (397)
T 2zzr_A 274 MTNYFLNRLPEDKVSYWDLIFTDG-------SGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMHTMLRSLIEQY 346 (397)
T ss_dssp HHHHHHHTCCTTSCCBSBTTCCTT-------SCCCBCHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHhCCccccCCCCCC-------CCCcCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHH
Confidence 56788887655665 322211000 12223355555555555543222 1 111 23566777777643
Q ss_pred cc------CCCCCCCccccccccccccc-cCCccchHHHHHHHHHHHh
Q 006042 618 LE------NGDFPQQEIMGVFMRNCMLH-YAEYRNIFPLRALAEYRKR 658 (663)
Q Consensus 618 ~~------dG~w~~~~~~g~f~~~~~~~-y~~y~~~~pl~AL~~y~~~ 658 (663)
.. +|-... .++-.|..-.+. --.|..||=|-||.|+.+.
T Consensus 347 ~~~~~~~~~glL~h--~~~~~~~~~~~d~~~~~gDYy~~Eal~r~~~~ 392 (397)
T 2zzr_A 347 SNNELIAGRPLLLH--GVYSWHSGKGVDEGNIWGDYYYLEALIRFYKD 392 (397)
T ss_dssp BCCCCCTTCCSBCC--EEEETTTTEEEEECBHHHHHHHHHHHHHHHSC
T ss_pred hccCCCCCCceeee--ceeeCCCCCCCCCCcchHHHHHHHHHHHHhcC
Confidence 21 222211 112233322222 2357889999999999764
No 68
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=85.25 E-value=24 Score=38.24 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=55.0
Q ss_pred chHHHHHHHHHH---HcCCCCchHHHHHHHHHHHHh---hcccCCCCCCcc------ccCCCCCCCcccCccCCCCCCCc
Q 006042 320 TWDTALGLQALM---ACNIADEVESVLGKGHDYLKK---AQIRDNPVGDYK------GNFRHFSKGAWTFSDQDHGWQVS 387 (663)
Q Consensus 320 vwdTal~~~AL~---~ag~~~~~~~~l~ka~~wL~~---~Q~~~~~~G~~~------~~~~~~~~GgW~fs~~~~~~pd~ 387 (663)
+-|.++++.||. ..|..++ .++..+||.. .|...++.|.|. .+|. ..|-.|.. ..+.|-.
T Consensus 53 ~RDaa~t~~aL~~~~~~G~~~~----a~~~~~~l~~~~~lQ~~~~~~G~l~~~glgE~~y~---vdG~~~~~-~w~~~Q~ 124 (472)
T 1gai_A 53 TRDSGLVIKTLVDLFRNGDTDL----LSTIEHYISSQAIIQGVSNPSGDLSSGGLGEPKFN---VDETAYTG-SWGRPQR 124 (472)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGG----HHHHHHHHHHHHHHHHCCBTTBCTTTTGGGCCEEC---TTSCBCCS-CCSCCCT
T ss_pred hhhHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHHHHhhcccCCCCccccCCCCCceEc---cCCCccCC-cCCCccc
Confidence 359999999999 7886443 5666777776 342222346665 4442 12222211 1123556
Q ss_pred cc-----hHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccc
Q 006042 388 DC-----TAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDE 430 (663)
Q Consensus 388 d~-----Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~ 430 (663)
|- |+..+.++..........+ ....-+.+++.++|+.+.-+.
T Consensus 125 D~~g~ra~~~~~~~~~l~~~g~~~~~-~~~~w~~i~~~l~~v~~~w~~ 171 (472)
T 1gai_A 125 DGPALRATAMIGFGQWLLDNGYTSAA-TEIVWPLVRNDLSYVAQYWNQ 171 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHH-HHTHHHHHHHHHHHHHHHTTS
T ss_pred cccchhHHHHHHHHHHHHHcCCcccc-chhHHHHHHHHHHHHHHhcCC
Confidence 77 6666666542221110000 001235689999999887654
No 69
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=83.25 E-value=28 Score=36.35 Aligned_cols=101 Identities=11% Similarity=0.011 Sum_probs=57.4
Q ss_pred CCchHHHHHHHHHHHcC------CCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCC-----CCC
Q 006042 318 SQTWDTALGLQALMACN------IADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHG-----WQV 386 (663)
Q Consensus 318 s~vwdTal~~~AL~~ag------~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~-----~pd 386 (663)
..+|+.+.++.++..+. -.+++....+++++||.+.-.... .| +||.++....+ --.
T Consensus 53 k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~~~d~~-gg-----------~g~~~s~d~dg~~~~~~~~ 120 (402)
T 1fp3_A 53 KYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAP-PE-----------KKCAFVLTRDGRPVKVQRS 120 (402)
T ss_dssp EEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTBSST-TS-----------CCBCSEECTTSCEEECCSS
T ss_pred cchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhccCcC-CC-----------CceEEEECCCCCccccccc
Confidence 44688899999987643 133467789999999998753211 12 03333321112 123
Q ss_pred ccchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhc--cccCCCc
Q 006042 387 SDCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQ--DEKTGGL 435 (663)
Q Consensus 387 ~d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Q--n~~DGgw 435 (663)
+.+-|+++.++..+... .+++...+...+.++++++.- .+ +|+|
T Consensus 121 lyd~af~~~a~~~~~~a----tgd~~~~~~A~~l~~~~~~~~~d~~-~G~f 166 (402)
T 1fp3_A 121 IFSECFYTMAMNELWRV----TAEARYQSEAVDMMDQIVHWVREDP-SGLG 166 (402)
T ss_dssp SHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHHHHTCG-GGGC
T ss_pred hHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhccCC-Cccc
Confidence 45678888888765431 122223344455666666544 45 6666
No 70
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin torroid, super beta sandwich, carbohydrase family GH15; 2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP: a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Probab=83.20 E-value=8.4 Score=43.93 Aligned_cols=94 Identities=11% Similarity=0.096 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCC
Q 006042 523 GTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRD 602 (663)
Q Consensus 523 ~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~ 602 (663)
..++++++|..+|. .+..++.++||.+.|++||+|-.......++.| +..+.-.|+..|.++.........
T Consensus 344 D~~~~~~al~~~G~----~~~a~~~l~~l~~~q~~~G~~~~~~~~~G~p~w-----~~~Q~D~~g~~l~~~~~~~~~g~~ 414 (684)
T 1lf6_A 344 DLYHVANAFIAAGD----VDSANRSLDYLAKVVKDNGMIPQNTWISGKPYW-----TGIQLDEQADPIILSYRLKRYDLY 414 (684)
T ss_dssp HHHHHHHHHHHHTC----HHHHHHHHHHHHHHHHHHSSCCSCBCTTSCBCC-----CCCCHHHHHHHHHHHHHTTCGGGT
T ss_pred HHHHHHHHHHHcCC----HHHHHHHHHHHHhhcCCCCCcccceeCCCCccc-----CCccccchHHHHHHHHHHHHcCch
Confidence 56778888888875 467889999999999999997532211111112 124456778777776654332212
Q ss_pred cHH-HHHHHHHHHhcCc--cCCCCCCC
Q 006042 603 PTP-IHRGVKLLINSQL--ENGDFPQQ 626 (663)
Q Consensus 603 ~~~-v~r~i~~L~~~Q~--~dG~w~~~ 626 (663)
+. ++++++|+.+.-. ..|-|.+.
T Consensus 415 -~~~v~~al~~i~~~~~~~~~g~WE~~ 440 (684)
T 1lf6_A 415 -DSLVKPLADFIIKIGPKTGQERWEEI 440 (684)
T ss_dssp -TTTHHHHHHHHHHHCSSBSSCTTSSC
T ss_pred -HHHHHHHHHHHHHhCCCCCccccccc
Confidence 35 9999999998653 34668765
No 71
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=81.54 E-value=18 Score=43.16 Aligned_cols=127 Identities=15% Similarity=0.227 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHhccc--CCCcccC----CC---------Ccch----hHHHHHHHHHHHcCCCcCChHHHHHHHHHH
Q 006042 491 IENFIVKAVHYIEDEQTA--DGSWYGN----WG---------ICFI----YGTCFALGGLQVAGKTYNNCLAIRRAVDFL 551 (663)
Q Consensus 491 ~~~~i~rav~~L~~~Q~~--DGsw~g~----wg---------~~~~----Y~T~~aL~aL~~~g~~~~~~~~i~ra~~~L 551 (663)
..+.+.+++--|+..+.+ .|+.-.. |. ..|- -.+++++.+|..+|. .+..++.++||
T Consensus 282 ~~~~~~rSl~~Lk~l~~~~t~GaiiAS~t~p~~e~~gg~rn~dgYry~W~RDaa~t~~all~~G~----~e~A~~~l~~L 357 (1020)
T 1ulv_A 282 LRTQYDVSLMTVKSHEDKTFPGAFIASLTIPWGQAASAETHREGYHAVWARDMYQSVTALLAAGD----EEAAARGVEWL 357 (1020)
T ss_dssp HHHHHHHHHHHHHTTBCSSSTTCBCSCSSCTTGGGSBCSSCCCTTCSBCHHHHHHHHHHHHHHTC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCeEEEeCCCCcccccCCccCCCCCceEccchHHHHHHHHHHcCC----HHHHHHHHHHH
Confidence 345667777777777654 2544221 11 0122 367888889988885 46778999999
Q ss_pred Hhhc-CCCCCccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCC-cH-HHHHHHHHHHhcCc--cCCCCCCC
Q 006042 552 LNAQ-SDDGGWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRD-PT-PIHRGVKLLINSQL--ENGDFPQQ 626 (663)
Q Consensus 552 l~~Q-~~DGgWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~-~~-~v~r~i~~L~~~Q~--~dG~w~~~ 626 (663)
.+.| +++|.|...+....++.|. ..+.-.|++.|.++....+.+.. -+ .++++++|+.++-. ..|-|.+.
T Consensus 358 ~~~Q~~~~G~~~~~y~i~G~~~w~-----~~Q~D~~g~~l~~~~~~~~~d~~~w~~~v~~al~~i~~~g~~~~~~~WEe~ 432 (1020)
T 1ulv_A 358 FTYQQQPDGHFPQTSRVDGTIGQN-----GIQLDETAFPILLANQIGRTDAGFYRNELKPAADYLVAAGPKTPQERWEET 432 (1020)
T ss_dssp HHHTCCTTSCCCSCBCTTSCBCCC-----CCBTHHHHHHHHHHHHHTCCCHHHHHHTHHHHHHHHHHHCSCBSBCTTSSC
T ss_pred HHHhcCCCCCeeeEEecCCCcCCC-----CccCccchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCChhhhccc
Confidence 9999 8999886543322222221 12446788888887765443210 12 58999999998643 33668765
No 72
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=80.79 E-value=17 Score=38.10 Aligned_cols=192 Identities=15% Similarity=0.090 Sum_probs=94.8
Q ss_pred Cch-HHHHHHHHHHHcCC---CCchHHHHHHHHHHHHhhcccCCCCCCc-cccCCCCCCCcccCccCCCCCCCccch---
Q 006042 319 QTW-DTALGLQALMACNI---ADEVESVLGKGHDYLKKAQIRDNPVGDY-KGNFRHFSKGAWTFSDQDHGWQVSDCT--- 390 (663)
Q Consensus 319 ~vw-dTal~~~AL~~ag~---~~~~~~~l~ka~~wL~~~Q~~~~~~G~~-~~~~~~~~~GgW~fs~~~~~~pd~d~T--- 390 (663)
+++ ||-+++.+|..++. .+++.....++.+++.+...+++ |+. ...+-+...|-+-+.....|+. |+.
T Consensus 145 ~~iID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~l~~~~r~d--gs~~h~~~~D~~tG~~~~~~t~qG~~--dds~Wa 220 (377)
T 2ahf_A 145 RIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRGD--DSSYHTFYFDPENGNAIRGGTHQGNT--DGSTWT 220 (377)
T ss_dssp EEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHTBBTT--SCBCSEEEECTTTCCEEEEECSSSSS--TTSCBH
T ss_pred eEEechHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCC--CCeEEEEEeeCCCCCeeeCCCcCCcC--CcchhH
Confidence 344 67777778875532 34466778888999999887643 332 2111111123221111113333 354
Q ss_pred ---HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccC
Q 006042 391 ---AEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVE 467 (663)
Q Consensus 391 ---a~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~ 467 (663)
|.++.++..+-+. .+++..-+...+..+++++.... ||+. .|+..... ++ ....|+|.
T Consensus 221 RGqAw~i~gl~~ly~~----T~d~~yL~~A~~la~~~l~~~~~-d~~p-ywd~~~~~-----~~------~~~~d~Sa-- 281 (377)
T 2ahf_A 221 RGQAWGIYGFALNSRY----LGNADLLETAKRMARHFLARVPE-DGVV-YWDFEVPQ-----EP------SSYRDSSA-- 281 (377)
T ss_dssp HHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHTTCCT-TSSC-BSBTTSCC-----CT------TSCBCHHH--
T ss_pred HHHHHHHHHHHHHHHH----HCChHHHHHHHHHHHHHHHhhHH-hCCc-ccccCCCc-----cC------CCccCCCH--
Confidence 8888888775421 12222233556667888888855 7772 12221100 00 00113223
Q ss_pred cHHHHHHHHHHhhhhCC--CcchHHHHHHHHHHHHHHHHhc------ccCCCccc---------CCCCcchhHHHHHHHH
Q 006042 468 CTASAIEAFMLFKKLYP--HHRKKEIENFIVKAVHYIEDEQ------TADGSWYG---------NWGICFIYGTCFALGG 530 (663)
Q Consensus 468 ~Ta~~L~aL~~~~~~~~--~~~~~~~~~~i~rav~~L~~~Q------~~DGsw~g---------~wg~~~~Y~T~~aL~a 530 (663)
++.+..+|..+.+..+ +...+.+.+...+.++-|.+.- +.+|-... ...++-+||-++-+.|
T Consensus 282 -~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y~~~~~~~~~g~L~h~~~~~~~~~~~d~~~~ygDy~~~Ea 360 (377)
T 2ahf_A 282 -SAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDGYAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEA 360 (377)
T ss_dssp -HHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHTBCCCCSSCCCSBSCBCSBTTTTBSSSBCBHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhcCCCCCCCeEEecccccCCCCCCCCcCccHHHHHHHHH
Confidence 3333334444433322 1123446677788888887653 23332211 1123467777777777
Q ss_pred HHHc
Q 006042 531 LQVA 534 (663)
Q Consensus 531 L~~~ 534 (663)
|..+
T Consensus 361 l~r~ 364 (377)
T 2ahf_A 361 LLRL 364 (377)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 73
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=77.17 E-value=12 Score=39.27 Aligned_cols=129 Identities=13% Similarity=0.109 Sum_probs=72.9
Q ss_pred HHHHHHHHH-hhccccCCCc-cccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHH
Q 006042 417 LYDAVNFLL-SLQDEKTGGL-AVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENF 494 (663)
Q Consensus 417 i~~a~~wLl-~~Qn~~DGgw-~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~ 494 (663)
+++++.+.. ....++.||| ..+..+... . | + ......++..|.+++.+....+....++..+.
T Consensus 19 ~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~-----~-~---~------~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~ 83 (402)
T 1fp3_A 19 LDRVMAFWLEHSHDREHGGFFTCLGRDGRV-----Y-D---D------LKYVWLQGRQVWMYCRLYRKLERFHRPELLDA 83 (402)
T ss_dssp HHHHHHHHHHHSBCTTTSSBCCCBCTTSCB-----S-C---C------CEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHH
T ss_pred HHHHHHHhhccCCCCCCCCEeeEECCCCCC-----C-C---C------ccchhhhHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 577888888 5666547888 433322110 0 1 1 11244567777777765443100112356678
Q ss_pred HHHHHHHHHHh-cccCC--CcccC----C----CCcchhHHHHHHHHHHHc----CCCcCChHHHHHHHHHHHhhc--CC
Q 006042 495 IVKAVHYIEDE-QTADG--SWYGN----W----GICFIYGTCFALGGLQVA----GKTYNNCLAIRRAVDFLLNAQ--SD 557 (663)
Q Consensus 495 i~rav~~L~~~-Q~~DG--sw~g~----w----g~~~~Y~T~~aL~aL~~~----g~~~~~~~~i~ra~~~Ll~~Q--~~ 557 (663)
++++++||.+. +.++| +|+-+ + ...+.|.-++++.++..+ |.. ...+.+.+.++++++.- .+
T Consensus 84 A~~~~~fl~~~~~d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~-~~~~~A~~l~~~~~~~~~d~~ 162 (402)
T 1fp3_A 84 AKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEA-RYQSEAVDMMDQIVHWVREDP 162 (402)
T ss_dssp HHHHHHHHHHHTBSSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHhccCcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHhccCC
Confidence 99999999997 55554 77632 1 123567777777777643 332 12344455666666654 45
Q ss_pred CCCc
Q 006042 558 DGGW 561 (663)
Q Consensus 558 DGgW 561 (663)
+|+|
T Consensus 163 ~G~f 166 (402)
T 1fp3_A 163 SGLG 166 (402)
T ss_dssp GGGC
T ss_pred Cccc
Confidence 5666
No 74
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=76.41 E-value=19 Score=39.22 Aligned_cols=127 Identities=13% Similarity=0.111 Sum_probs=70.5
Q ss_pred ccchHHHHHHHHHhcCCCCcccCCCCC---HHHHHHHHHH---HHhhccccCCCcc----------ccccCCchhhhhhc
Q 006042 387 SDCTAEGLKCVLQLSLMPPEIVGEKME---PERLYDAVNF---LLSLQDEKTGGLA----------VWERAGASLLLEWL 450 (663)
Q Consensus 387 ~d~Ta~al~aL~~~~~~~~~~~~~~~~---~~~i~~a~~w---Ll~~Qn~~DGgw~----------~~~~~~~~~~l~~~ 450 (663)
+-|.|+++.+|+.++.. ++ .. .+.+++-++| |.+..++ +|.|. -|..+-.
T Consensus 68 ~RDaa~t~~aL~~~g~~-----~~-~~~~l~~~a~~y~~~~~~lq~~~~~-~G~~~~~~~~glgep~y~vdG~------- 133 (492)
T 2fba_A 68 TRDSAITFLTVLSELED-----NN-FNTTLAKAVEYYINTSYNLQRTSNP-SGSFDDENHKGLGEPKFNTDGS------- 133 (492)
T ss_dssp HHHHHHHHHHHHHHHHH-----TT-TCHHHHHHHHHHHHHHHHHHTSCBT-TBCTTSGGGGGGGCCEECTTSC-------
T ss_pred cchHHHHHHHHHHhCcc-----cc-cccchHHHHHHHHHHHHHHhcccCC-CCCcCcccccccCceeeccCCC-------
Confidence 45788899888877520 00 11 3445566665 3333477 88885 2221110
Q ss_pred CcccccccccccccccCcHHHHHHHHHHhhhhC--CCcc--------------hHHH-HHHHHHHHHHHHHhccc-C-CC
Q 006042 451 NPVEFLEDLIVEHTYVECTASAIEAFMLFKKLY--PHHR--------------KKEI-ENFIVKAVHYIEDEQTA-D-GS 511 (663)
Q Consensus 451 ~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~--~~~~--------------~~~~-~~~i~rav~~L~~~Q~~-D-Gs 511 (663)
.|. .....+-.|.++..+.++..+.... .+.. ...+ .+.|++.++|+.+.-+. | |-
T Consensus 134 ----~~~-~~w~~~Q~D~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w~~pd~dl 208 (492)
T 2fba_A 134 ----AYT-GAWGRPQNDGPALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWDSTGFDL 208 (492)
T ss_dssp ----BCC-SCCSCCBTTHHHHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTTSCEECT
T ss_pred ----cCC-cccCCccccchhHHHHHHHHHHHHhhccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 010 0112345678898888776542110 0100 0223 47899999999998553 3 67
Q ss_pred cccCCCCcchhHHHHHHHHHHH
Q 006042 512 WYGNWGICFIYGTCFALGGLQV 533 (663)
Q Consensus 512 w~g~wg~~~~Y~T~~aL~aL~~ 533 (663)
|..+.|. ++|..+.+..||..
T Consensus 209 WEer~g~-~~~T~~~~~~AL~~ 229 (492)
T 2fba_A 209 WEENQGR-HFFTSLVQQKALAY 229 (492)
T ss_dssp TSCCEEC-CHHHHHHHHHHHHH
T ss_pred cCccCCC-ChHHHHHHHHHHHH
Confidence 7655443 77777766677753
No 75
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=75.80 E-value=45 Score=37.01 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=88.2
Q ss_pred HHHHHHHHHHhhhhCCCcc------hHHHHHHHHHHHHHHHHhcccCCCccc----CCCCc--------c---------h
Q 006042 469 TASAIEAFMLFKKLYPHHR------KKEIENFIVKAVHYIEDEQTADGSWYG----NWGIC--------F---------I 521 (663)
Q Consensus 469 Ta~~L~aL~~~~~~~~~~~------~~~~~~~i~rav~~L~~~Q~~DGsw~g----~wg~~--------~---------~ 521 (663)
|+.++-+|..+.+..++.. .+.+.+.++=+++||+++|.++|.++. .|+.. + .
T Consensus 164 ~~~~~w~ll~~~~~~~~~~~~~~~~~~~lldE~rWg~D~llkm~~~~g~~y~qVgd~W~~d~~~R~~~~~~~~~~~~~~~ 243 (586)
T 3h7l_A 164 TPMVVWNILKGLSLLEGSEDIAAFTRTRLIEEALFGADFLVRMQNEKGFFYMTVFDKWSKDTAQREICAYETQLGHKFDD 243 (586)
T ss_dssp HHHHHHHHHHHHHHSTTSSSSCHHHHHHHHHHHHHHHHHHHHTBCTTSCBBCEEECTTCCCGGGCEEEEEETTTTEEESC
T ss_pred hhHHHHHHHHHHHHhhhhccCcccchHHHHHHHHHHHHHHHhcccCCCeEEEEecCCCCCCCCccccccccCCCCCCCcc
Confidence 3444455554444333211 245677889999999999999998863 34320 0 0
Q ss_pred h------HHHHHHHHHHHcCCC-----cC---ChHHHHHHHHHHHhhcCC---CCCccCCCcCCCCccccCCCCCCCcHH
Q 006042 522 Y------GTCFALGGLQVAGKT-----YN---NCLAIRRAVDFLLNAQSD---DGGWGESYKSCPNKIYTPLEGKRSTVV 584 (663)
Q Consensus 522 Y------~T~~aL~aL~~~g~~-----~~---~~~~i~ra~~~Ll~~Q~~---DGgWg~~~~s~~~~~y~~~~g~~s~~~ 584 (663)
| +++.++.||+.+... .. --...+++.+|+.++... +|. ..| .+-.
T Consensus 244 y~~~~~~~agl~aAALA~Asrvf~d~~~~a~~~L~aA~~a~~fa~~~~~~y~~~g~----------~~~-------~De~ 306 (586)
T 3h7l_A 244 YQAGFRQGGGVAIAALAAASRLGVHGEYDQQKYRNAAENGYWHLKEHNTQYLNDGE----------ENI-------IDEY 306 (586)
T ss_dssp CBCCGGGTHHHHHHHHHHHTTSSSCSSSCHHHHHHHHHHHHHHHHHHHHHHSTTSC----------CCH-------HHHH
T ss_pred eecCCCCcHHHHHHHHHHHhcccCCCCcChHHHHHHHHHHHHHHHhcCccccCCCC----------ccc-------hhHH
Confidence 1 334455666655443 11 123455778898886431 110 001 1112
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHHH---HHHHHhcCccC--CC--CCCCccccccccccccccCCccchHHHHHHHHHHH
Q 006042 585 HTALAVLSLISAGQADRDPTPIHRG---VKLLINSQLEN--GD--FPQQEIMGVFMRNCMLHYAEYRNIFPLRALAEYRK 657 (663)
Q Consensus 585 ~Ta~ALlaL~~ag~~~~~~~~v~r~---i~~L~~~Q~~d--G~--w~~~~~~g~f~~~~~~~y~~y~~~~pl~AL~~y~~ 657 (663)
.-.||.+-|..+... +.-++.+ .+.|.+++..+ |+ |.... + .+++ -||.=.+..++.||.+|.+
T Consensus 307 ~~~WAA~eLy~ATgd---~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d--~-~~r~---~~d~a~~gl~~iaLl~l~~ 377 (586)
T 3h7l_A 307 CALLASVELFKATKE---TRYLEESRLWAQRLVARQMSDEQIQHFWSANQ--D-GSRP---YFHAAEAGLPTIALCEYLA 377 (586)
T ss_dssp HHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHTTEECCSSCSSEEBSSS--S-SSSB---CCCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhccCCccCCCcCCCcc--c-CCcc---cccccccHHHHHHHHHhhh
Confidence 236888888866432 2234444 34566666443 33 33211 0 2232 2343357899999999977
Q ss_pred hCC
Q 006042 658 RVP 660 (663)
Q Consensus 658 ~~~ 660 (663)
...
T Consensus 378 ~~~ 380 (586)
T 3h7l_A 378 IED 380 (586)
T ss_dssp HCC
T ss_pred hcC
Confidence 654
No 76
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=70.79 E-value=68 Score=33.04 Aligned_cols=191 Identities=15% Similarity=0.103 Sum_probs=99.6
Q ss_pred CchHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHH
Q 006042 319 QTWDTALGLQALMACNI---ADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLK 395 (663)
Q Consensus 319 ~vwdTal~~~AL~~ag~---~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~ 395 (663)
..|=++.++-+|.++.. .+++...++++.+++..... +.+. + . -.||-++..+
T Consensus 44 ~yWW~a~~~~~l~d~~~~tgd~~y~~~a~~~~~~~~~~~~-----~~~~----------------~-~--~~DD~a~~~l 99 (349)
T 3k7x_A 44 NYWWLAHLVEVRLDAYLRTKKQADLEVAEKTYLHNKNRNG-----GTLI----------------H-D--FYDDMLWNAL 99 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTT-----SSSC----------------C-S--BHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-----CCCC----------------c-c--CccHHHHHHH
Confidence 33557777788876431 23456777788887776321 2110 0 1 1378888777
Q ss_pred HHHHhcCCCCcccCCCCCHHHHHHHHHHH-Hhhcccc-CCCccccccCCchhhhhhcCcccccccccccccccCcHHHHH
Q 006042 396 CVLQLSLMPPEIVGEKMEPERLYDAVNFL-LSLQDEK-TGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAI 473 (663)
Q Consensus 396 aL~~~~~~~~~~~~~~~~~~~i~~a~~wL-l~~Qn~~-DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L 473 (663)
+++.+-+. .+++..-+..++..+++ .+.-+++ .||+. +.... +.+ ..+-..+..+
T Consensus 100 a~~~aye~----t~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~-W~~~~-----------~~~-------knaisN~~~~ 156 (349)
T 3k7x_A 100 AAYRLYKA----TGKSIYLEDAQLVWQDLVDTGWNDIMGGGFA-WRRPQ-----------MYY-------KNTPVNAPFI 156 (349)
T ss_dssp HHHHHHHH----HCCHHHHHHHHHHHHHHHHHTBCSGGGSCBE-EETTE-----------EEE-------EEHHHHHHHH
T ss_pred HHHHHHHH----HCCchHHHHHHHHHHHHHHhCCCCCCCCceE-ecCCC-----------ccc-------cchhhHHHHH
Confidence 77766431 12222333444555666 4443431 36652 22110 001 1222455666
Q ss_pred HHHHHhhhhCCCcchHHHHHHHHHHHHHHHHh-cccCCCcccC----C-C-----CcchhHHHHHHHHHHHcCCCcCChH
Q 006042 474 EAFMLFKKLYPHHRKKEIENFIVKAVHYIEDE-QTADGSWYGN----W-G-----ICFIYGTCFALGGLQVAGKTYNNCL 542 (663)
Q Consensus 474 ~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~-Q~~DGsw~g~----w-g-----~~~~Y~T~~aL~aL~~~g~~~~~~~ 542 (663)
.+++.+.+... .+.+.+..++..+|+.+. .+++|..+.. . | ..++|+.+..|.|+..+-..-.+..
T Consensus 157 ~~la~l~~~tg---d~~Yl~~A~~~~~w~~~~l~d~~g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~g~~~LY~~T~d~~ 233 (349)
T 3k7x_A 157 ILSCWLYNELN---ETKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGTIDYEWKFTYNQGVYIGANLELYRITKEAI 233 (349)
T ss_dssp HHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHBCTTSCBCCEECTTSSSCBCTTCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHhC---CHHHHHHHHHHHHHHHhcCCCCCCeEecCCccCCCCccCCcCeeeHHHHHHHHHHHHHHHhhCcHH
Confidence 66666544322 234567788999999875 4566655421 1 1 2478999999999876521111233
Q ss_pred HHH---HHHHHHHhhcCCCC
Q 006042 543 AIR---RAVDFLLNAQSDDG 559 (663)
Q Consensus 543 ~i~---ra~~~Ll~~Q~~DG 559 (663)
.++ +.++.+++.--+||
T Consensus 234 yl~~a~~l~~~~~~~f~~~g 253 (349)
T 3k7x_A 234 YLDTANKTAAISLKELTEDG 253 (349)
T ss_dssp HHHHHHHHHHHHHHHHEETT
T ss_pred HHHHHHHHHHHHHHHhccCC
Confidence 444 44445544433454
No 77
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=70.44 E-value=8.7 Score=43.03 Aligned_cols=123 Identities=12% Similarity=0.019 Sum_probs=66.9
Q ss_pred ccchHHHHHHHH----HhcCCCCcccCCCCCHHHHHHHHHHHHh---hc---cccCCCcccc----ccCCchhhhhhcCc
Q 006042 387 SDCTAEGLKCVL----QLSLMPPEIVGEKMEPERLYDAVNFLLS---LQ---DEKTGGLAVW----ERAGASLLLEWLNP 452 (663)
Q Consensus 387 ~d~Ta~al~aL~----~~~~~~~~~~~~~~~~~~i~~a~~wLl~---~Q---n~~DGgw~~~----~~~~~~~~l~~~~~ 452 (663)
+-|.+++++||+ .++ +.+..++..+||.+ .| ++ ||+|..- +.. + .++.
T Consensus 52 ~RDaa~t~~aL~~~~~~~G-----------~~~~a~~~~~~l~~~~~lQ~~y~~-~G~~~~~~~l~E~~----~--~ldG 113 (599)
T 2vn4_A 52 TRDSALVFKNLIDRFTETY-----------DAGLQRRIEQYITAQVTLQGLSNP-SGSLADGSGLGEPK----F--ELTL 113 (599)
T ss_dssp HHHHHHHHHHHHHHHHHSB-----------CHHHHHHHHHHHHHHHHHHHCCBT-TBCSTTSGGGGCCE----E--CTTS
T ss_pred hhhHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHhcccceeeeeCC-CCCcccccCcCceE----E--ecCC
Confidence 468999999988 543 34566788999974 78 88 9998411 100 0 0110
Q ss_pred ccccccccccccccCc-----HHHHHHHHHHhhhhCCCcc---hHHHHHHHHHHHHHHHHhccc--CCCcccCCCCcchh
Q 006042 453 VEFLEDLIVEHTYVEC-----TASAIEAFMLFKKLYPHHR---KKEIENFIVKAVHYIEDEQTA--DGSWYGNWGICFIY 522 (663)
Q Consensus 453 ~e~f~~~~~d~~~~~~-----Ta~~L~aL~~~~~~~~~~~---~~~~~~~i~rav~~L~~~Q~~--DGsw~g~wg~~~~Y 522 (663)
. .| +.....+--|. ++..+.++. +... +.. ...+-+.|+++++|+.+..+. .|-|..+-| .++|
T Consensus 114 ~-~~-~~~w~~~Q~D~~glr~~~~~~~~~~-~~~~--g~~~~~~~~~w~~v~~~l~~v~~~w~~~d~dlWEer~g-~~~~ 187 (599)
T 2vn4_A 114 K-PF-TGNWGRPQRDGPALRAIALIGYSKW-LINN--NYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWEEVNG-SSFF 187 (599)
T ss_dssp C-BC-CSCCSCCCTHHHHHHHHHHHHHHHH-HHHT--TCHHHHHHHTHHHHHHHHHHHHHHTTSCEECTTSCCEE-EEHH
T ss_pred c-cc-cCcCCCeeccccchhHHHHHHHHHH-HHHh--CCcccccHHHHHHHHHHHHHHHHhCCCCCCCeeeecCC-cchH
Confidence 0 01 00011123344 444433332 2111 111 122457899999999998764 266665533 3777
Q ss_pred HHHHHHHHHHH
Q 006042 523 GTCFALGGLQV 533 (663)
Q Consensus 523 ~T~~aL~aL~~ 533 (663)
..+....||..
T Consensus 188 T~~~~~~aL~~ 198 (599)
T 2vn4_A 188 TVANQHRALVE 198 (599)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76666666643
No 78
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=69.78 E-value=88 Score=34.67 Aligned_cols=130 Identities=19% Similarity=0.122 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccc--cc--------cccccccccCcHHHHHHHHHHhhhh--
Q 006042 415 ERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEF--LE--------DLIVEHTYVECTASAIEAFMLFKKL-- 482 (663)
Q Consensus 415 ~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~--f~--------~~~~d~~~~~~Ta~~L~aL~~~~~~-- 482 (663)
+.++-++|||++||.+ +|++-.--.+. |.+...+-+. +. +..++ ....++..+.+|+.....
T Consensus 194 dE~rWg~D~llkm~~~-~g~~y~qVgd~---W~~d~~~R~~~~~~~~~~~~~~~y~~~--~~~~agl~aAALA~Asrvf~ 267 (586)
T 3h7l_A 194 EEALFGADFLVRMQNE-KGFFYMTVFDK---WSKDTAQREICAYETQLGHKFDDYQAG--FRQGGGVAIAALAAASRLGV 267 (586)
T ss_dssp HHHHHHHHHHHHTBCT-TSCBBCEEECT---TCCCGGGCEEEEEETTTTEEESCCBCC--GGGTHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHhcccC-CCeEEEEecCC---CCCCCCccccccccCCCCCCCcceecC--CCCcHHHHHHHHHHHhcccC
Confidence 3456688999999999 99863222221 3211000000 10 00111 112244455566655544
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhcc---cCCCcccCCCCcchhHHHHHHHHHHHc-CCCcCChHHHHHHHH---HHHhhc
Q 006042 483 YPHHRKKEIENFIVKAVHYIEDEQT---ADGSWYGNWGICFIYGTCFALGGLQVA-GKTYNNCLAIRRAVD---FLLNAQ 555 (663)
Q Consensus 483 ~~~~~~~~~~~~i~rav~~L~~~Q~---~DGsw~g~wg~~~~Y~T~~aL~aL~~~-g~~~~~~~~i~ra~~---~Ll~~Q 555 (663)
++.+..++.-+..+++.+|+.++.. .+|. -+...-|+..+|..-|..+ |. ...++.+.+ .|..++
T Consensus 268 d~~~~a~~~L~aA~~a~~fa~~~~~~y~~~g~----~~~~De~~~~WAA~eLy~ATgd----~~YL~~a~~~a~~l~~~~ 339 (586)
T 3h7l_A 268 HGEYDQQKYRNAAENGYWHLKEHNTQYLNDGE----ENIIDEYCALLASVELFKATKE----TRYLEESRLWAQRLVARQ 339 (586)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHHSTTSC----CCHHHHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHTTE
T ss_pred CCCcChHHHHHHHHHHHHHHHhcCccccCCCC----ccchhHHHHHHHHHHHHHHhCC----HHHHHHHHHHHHHHHHhc
Confidence 3444445666778899999988642 2332 2222334434444444443 43 344444443 455555
Q ss_pred CCC
Q 006042 556 SDD 558 (663)
Q Consensus 556 ~~D 558 (663)
..|
T Consensus 340 ~~~ 342 (586)
T 3h7l_A 340 MSD 342 (586)
T ss_dssp ECC
T ss_pred cCC
Confidence 443
No 79
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=67.00 E-value=64 Score=34.01 Aligned_cols=129 Identities=16% Similarity=0.174 Sum_probs=76.5
Q ss_pred HHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCcchHHHHHHH
Q 006042 416 RLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHHRKKEIENFI 495 (663)
Q Consensus 416 ~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~~~~~~~~i 495 (663)
.+...+.|-.....+ . ||...+.+ +.. ...+ .-....++..|.+++..... . .+...+..
T Consensus 16 ~~~~ll~f~~~~~d~-~-GF~~ld~~--g~~------~~~~------~k~~~~nar~i~~~a~a~~~-g---~~~~l~~A 75 (421)
T 2zbl_A 16 ETDRIFNFGKNAVVP-T-GFGWLGNK--GQI------KEEM------GTHLWITARMLHVYSVAASM-G---RPGAYDLV 75 (421)
T ss_dssp HHHHHHHHHGGGEET-T-EECCBCTT--SCB------CGGG------CEEHHHHHHHHHHHHHHHHT-T---CTTHHHHH
T ss_pred HHHHHHHHHHhCcCC-C-CcceECCC--CCC------CCCc------hhhHHHHHHHHHHHHHHHHc-C---ChhHHHHH
Confidence 455667777777777 5 67432221 100 0001 11345678888888876542 1 12356788
Q ss_pred HHHHHHHHHhcc-cC-CCcccCC---C----CcchhHHHHHHHHHHHc---CCCcCChHHHHHHHHHHHhhcC-C-CCCc
Q 006042 496 VKAVHYIEDEQT-AD-GSWYGNW---G----ICFIYGTCFALGGLQVA---GKTYNNCLAIRRAVDFLLNAQS-D-DGGW 561 (663)
Q Consensus 496 ~rav~~L~~~Q~-~D-Gsw~g~w---g----~~~~Y~T~~aL~aL~~~---g~~~~~~~~i~ra~~~Ll~~Q~-~-DGgW 561 (663)
+++++||.+... ++ |+|+-+. | ....|.-++++.++... |.+ ...+.+++.++++.+.-. + +|||
T Consensus 76 ~~~~~fl~~~~~D~~~GG~~~s~d~dg~~~~~k~lyd~Af~i~al~~~~~tg~~-~~l~~a~~~~~~l~~~~~d~~~Ggf 154 (421)
T 2zbl_A 76 DHGIKAMNGALRDKKYGGWYACVNDQGVVDASKQGYQHFFALLGAASAVTTGHP-EARKLLDYTIEVIEKYFWSEEEQMC 154 (421)
T ss_dssp HHHHHHHTTTTBCTTTSSBCSEEETTEEEECCEEHHHHHHHHHHHHHHHTTTCT-THHHHHHHHHHHHHHHTEETTTTEE
T ss_pred HHHHHHHHHhccCcCCCeEEEEeCCCCCcCCchhHHHHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHHhccCCCCCe
Confidence 999999998743 33 8887321 1 24667778888888764 333 245667778888887543 3 6887
Q ss_pred cCCC
Q 006042 562 GESY 565 (663)
Q Consensus 562 g~~~ 565 (663)
....
T Consensus 155 ~~~~ 158 (421)
T 2zbl_A 155 LESW 158 (421)
T ss_dssp CCEE
T ss_pred eeee
Confidence 6553
No 80
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=63.87 E-value=66 Score=33.88 Aligned_cols=189 Identities=13% Similarity=0.094 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCC---CCchHHHHHHHHHHHHhhcccCCCCCC-ccccCCCCCCCcccCccCCCCCCCccch------H
Q 006042 322 DTALGLQALMACNI---ADEVESVLGKGHDYLKKAQIRDNPVGD-YKGNFRHFSKGAWTFSDQDHGWQVSDCT------A 391 (663)
Q Consensus 322 dTal~~~AL~~ag~---~~~~~~~l~ka~~wL~~~Q~~~~~~G~-~~~~~~~~~~GgW~fs~~~~~~pd~d~T------a 391 (663)
|+.+.+.+|..++. .+++.....++.+++.+...+++ |+ +...+-+...|.+......+|+. |+. |
T Consensus 174 D~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l~~~~r~d--gs~~h~~~~d~~~G~~~~~~t~qGy~--dds~WaRGqA 249 (397)
T 2zzr_A 174 DCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASANNVVRDD--SSAFHTFYFDPETGEPLKGVTRQGYS--DESSWARGQA 249 (397)
T ss_dssp THHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTT--SCBCSEEEECTTTCCEEEEECTTSSS--TTSCBHHHHH
T ss_pred chHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCC--CCeEEEEEeeCCCCCcccCCcccccC--cchhhHHHHH
Confidence 68888888887642 23456667778889998887653 32 21111111123221111113433 454 8
Q ss_pred HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHH
Q 006042 392 EGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTAS 471 (663)
Q Consensus 392 ~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~ 471 (663)
.++.++..+-+. .+++..-+...+..+++++.=.. ||+ +.|+..... + + ....| ++.++.
T Consensus 250 w~i~gl~~lY~~----T~d~~yL~~A~~la~~~l~~~~~-d~~-pywdt~~~~-----~-~-----~~~~D---~Sa~ai 309 (397)
T 2zzr_A 250 WGIYGIPLSYRK----MKDYQQIILFKGMTNYFLNRLPE-DKV-SYWDLIFTD-----G-S-----GQPRD---TSATAT 309 (397)
T ss_dssp HHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHTCCT-TSC-CBSBTTCCT-----T-S-----CCCBC---HHHHHH
T ss_pred HHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHhhHH-hCC-ccccCCCCC-----C-C-----CCcCC---CCHHHH
Confidence 888888876421 12212223334455666665433 665 223321110 0 0 01123 223334
Q ss_pred HHHHHHHhhhhCCCcchHH--HHHHHHHHHHHHHHhc------ccCCCccc---C------CCCcchhHHHHHHHHHHHc
Q 006042 472 AIEAFMLFKKLYPHHRKKE--IENFIVKAVHYIEDEQ------TADGSWYG---N------WGICFIYGTCFALGGLQVA 534 (663)
Q Consensus 472 ~L~aL~~~~~~~~~~~~~~--~~~~i~rav~~L~~~Q------~~DGsw~g---~------wg~~~~Y~T~~aL~aL~~~ 534 (663)
+..+|..+....++..... +.+...+.++-+.+.- +.+|-... . ..++-+|+-.+-+.||..+
T Consensus 310 aA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y~~~~~~~~~glL~h~~~~~~~~~~~d~~~~~gDYy~~Eal~r~ 389 (397)
T 2zzr_A 310 AVCGIHEMLKYLPEVDPDKETYKYAMHTMLRSLIEQYSNNELIAGRPLLLHGVYSWHSGKGVDEGNIWGDYYYLEALIRF 389 (397)
T ss_dssp HHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHHHHHTBCCCCCTTCCSBCCEEEETTTTEEEEECBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHhccCCCCCCceeeeceeeCCCCCCCCCCcchHHHHHHHHHHHH
Confidence 4444444444322211123 5667778888777653 22222211 1 1234678999999998876
No 81
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=57.34 E-value=45 Score=34.47 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhcccCC-CcccC-C---CCcchh-------HHHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC
Q 006042 492 ENFIVKAVHYIEDEQTADG-SWYGN-W---GICFIY-------GTCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG 559 (663)
Q Consensus 492 ~~~i~rav~~L~~~Q~~DG-sw~g~-w---g~~~~Y-------~T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 559 (663)
.+.++++++.|.+..-+|+ .++.. + ...|.| ....+..-|+..|.. .+ ...+||.+.-..+|
T Consensus 190 ~~l~~~g~~lL~~g~p~D~~~l~~~~~~~~~~~y~yd~~vn~iDalrv~L~La~~g~~---~~---~~~~fl~~~~~~~g 263 (350)
T 3ren_A 190 EGIYEKSNSIIENGKISEEVPLYRKVFYEETQKYDEEENVDFLLSTIVILNRIEAGEN---EE---SSIKWIKEKFKKDG 263 (350)
T ss_dssp HHHHHHHHHHHHTTBCCSSSCCBCSEEETTTTEECCCSEEEHHHHHHHHHHHHHTTCC---CH---HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCcccccCCcccccCCCCcccccccchHHHHHHHHHHHhcCCC---cH---HHHHHHHHHHhhcC
Confidence 5678999999998665663 23211 1 123555 233343446666664 22 23677774221234
Q ss_pred ---CccCCCcCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCCCCCCCcccccccccc
Q 006042 560 ---GWGESYKSCPNKIYTPLEGKRSTVVHTALAVLSLISAGQADRDPTPIHRGVKLLINSQLENGDFPQQEIMGVFMRNC 636 (663)
Q Consensus 560 ---gWg~~~~s~~~~~y~~~~g~~s~~~~Ta~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG~w~~~~~~g~f~~~~ 636 (663)
+|-.-. +. .+.+..+|+ -.||+.+|...... |.+-.+.+++-|.+-|..|+..+.- |.|-..-
T Consensus 264 ~l~~~y~~~----tg--~~~~~~eS~---g~yAiaal~~~~~~--D~~la~~~~~rm~~fq~~d~~s~yy---GG~~~~~ 329 (350)
T 3ren_A 264 FLVATYNGK----NG--DATSQIESP---SIYSNVALIANYIG--DKELFNKAIDKLKYYQIKNKDSVLY---GGFGDEK 329 (350)
T ss_dssp SCCSEEETT----TC--CBCCCCCCH---HHHHHHHHHHHHHT--CHHHHHHHHHHHHHHSCCCTTSTTT---TSCSBTT
T ss_pred CcceEEECC----CC--CcCCCCCCH---HHHHHHHHHHHHcC--CHHHHHHHHHHHHhcccCCCCcccC---CcccccC
Confidence 343210 00 000111232 24666555543222 3457888999999988888553321 2221111
Q ss_pred ccccCCccchHHHHHHHHHH
Q 006042 637 MLHYAEYRNIFPLRALAEYR 656 (663)
Q Consensus 637 ~~~y~~y~~~~pl~AL~~y~ 656 (663)
--.-++|.+..||.|...|.
T Consensus 330 ~~~~~sfdNL~~LlA~~~~~ 349 (350)
T 3ren_A 330 TNSVYSFDNLNALLAFQKYK 349 (350)
T ss_dssp TTBCBHHHHHHHHHHHHTCC
T ss_pred CCceeeeccHHHHHHHHhhc
Confidence 11346789999999987764
No 82
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=54.95 E-value=14 Score=27.83 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCC
Q 006042 525 CFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDD 558 (663)
Q Consensus 525 ~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 558 (663)
-.|..||...+. .++||++||-++..+.
T Consensus 34 ~qA~kALKat~~------NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 34 ECVLRAMKKKGE------NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHHCS------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHcCC------CHHHHHHHHHhCCCCC
Confidence 457788888665 3899999999998764
No 83
>1gai_A Glucoamylase-471; hydrolase, glycosidase, polysaccharide degradation, glycoPro; HET: MAN NAG BMA GAC; 1.70A {Aspergillus awamori} SCOP: a.102.1.1 PDB: 1gah_A* 3gly_A* 1dog_A* 1glm_A* 1agm_A* 3eqa_A*
Probab=50.87 E-value=27 Score=37.78 Aligned_cols=42 Identities=10% Similarity=0.136 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhccc--CCCcccCCCCcchhHHHHHHHHHHH
Q 006042 491 IENFIVKAVHYIEDEQTA--DGSWYGNWGICFIYGTCFALGGLQV 533 (663)
Q Consensus 491 ~~~~i~rav~~L~~~Q~~--DGsw~g~wg~~~~Y~T~~aL~aL~~ 533 (663)
+-+.|++.++||.+.-+. -|-|..+-| .++|..+.+..||..
T Consensus 154 ~w~~i~~~l~~v~~~w~~pd~dlWEer~g-~~~~T~~~~~~AL~~ 197 (472)
T 1gai_A 154 VWPLVRNDLSYVAQYWNQTGYDLWEEVNG-SSFFTIAVQHRALVE 197 (472)
T ss_dssp HHHHHHHHHHHHHHHTTSCEECTTSCCEE-EEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCcccCC-CCHHHHHHHHHHHHH
Confidence 446799999999987553 377765533 377777666666653
No 84
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=49.49 E-value=2.3e+02 Score=30.02 Aligned_cols=89 Identities=4% Similarity=0.096 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhccccCCCccccccCC--chhhhhhcCcccc-ccc----ccccccccCcHHHHHHHHHHhhhhCCCcc
Q 006042 415 ERLYDAVNFLLSLQDEKTGGLAVWERAG--ASLLLEWLNPVEF-LED----LIVEHTYVECTASAIEAFMLFKKLYPHHR 487 (663)
Q Consensus 415 ~~i~~a~~wLl~~Qn~~DGgw~~~~~~~--~~~~l~~~~~~e~-f~~----~~~d~~~~~~Ta~~L~aL~~~~~~~~~~~ 487 (663)
+.++-++|||++||.+ +|++-.-..+. ++.+.. .|-+. -.+ +...++.++.|+.+..+|+.......+.-
T Consensus 94 deikwg~D~llk~~~~-~g~~y~qVgd~~~Dh~~w~--~Pe~~~~~R~~y~~~~~~pgs~~a~~~AAalA~as~vfk~~D 170 (433)
T 1ks8_A 94 KAVKWATDYFIKAHTS-QNEFYGQVGQGDADHAFWG--RPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVD 170 (433)
T ss_dssp HHHHHHHHHHHHHCCB-TTBEEEEESCHHHHHTCCS--CGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhccC-CCcEEEEeCCCCcCCcccC--CHhhCCCCCceeeccCCCCccHHHHHHHHHHHHHHHhccccC
Confidence 4567788899999998 88763222111 111111 11110 000 01123445567777777766554432211
Q ss_pred ---hHHHHHHHHHHHHHHHHhc
Q 006042 488 ---KKEIENFIVKAVHYIEDEQ 506 (663)
Q Consensus 488 ---~~~~~~~i~rav~~L~~~Q 506 (663)
..+.-+..+++-+|..+++
T Consensus 171 ~~yA~~~L~~A~~~~~fa~~~~ 192 (433)
T 1ks8_A 171 GTYSNNLLTHARQLFDFANNYR 192 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
Confidence 2344556677888888765
No 85
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=41.08 E-value=27 Score=26.97 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=21.5
Q ss_pred HHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCCC
Q 006042 526 FALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDDG 559 (663)
Q Consensus 526 ~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~DG 559 (663)
..+.||...+-. +++|++||++.+..+|
T Consensus 36 an~~AL~at~Gn------ve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 36 ANLQALIATDGD------TNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHHCCSSSC
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCccC
Confidence 357888887543 7899999999876554
No 86
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=41.00 E-value=4.7e+02 Score=30.11 Aligned_cols=99 Identities=10% Similarity=0.034 Sum_probs=56.9
Q ss_pred cchHHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccC
Q 006042 388 DCTAEGLKCVLQLSLMPPEIVGEKMEPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVE 467 (663)
Q Consensus 388 d~Ta~al~aL~~~~~~~~~~~~~~~~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~ 467 (663)
-|+....++|.. ..++.+++.+..+.+.|.+ ||.....-.... ..+...+...++|
T Consensus 367 RD~~qd~~~~~~------------~~pe~ar~~il~~~~~Q~~-dG~v~h~~~p~~-----------~~g~~~~~~~~~D 422 (822)
T 3rrs_A 367 RDSNQDLLGFVH------------LIPERARERIIDIASTQFA-DGSAYHQYQPLT-----------KRGNNDIGSGFND 422 (822)
T ss_dssp HHHHHHHHHHTT------------TCHHHHHHHHHHHHTTCCT-TSCCCSEEETTT-----------TEECTTTCSCBTT
T ss_pred HHHHHHHHHHHh------------cCHHHHHHHHHHHHHhhcc-cCcccceecCcC-----------CCCccCCCCcccc
Confidence 356666666642 2457889999999999999 998743211000 0011111134577
Q ss_pred cHHHHHHHHHHhhhhCCCc--ch------------HHHHHHHHHHHHHHHHhcccCC
Q 006042 468 CTASAIEAFMLFKKLYPHH--RK------------KEIENFIVKAVHYIEDEQTADG 510 (663)
Q Consensus 468 ~Ta~~L~aL~~~~~~~~~~--~~------------~~~~~~i~rav~~L~~~Q~~DG 510 (663)
.+...+.++..+-+...+. -+ ..+-+.++++++|+.+...++|
T Consensus 423 ~~lWl~~av~~Yi~~TGD~~~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 479 (822)
T 3rrs_A 423 DPLWLIAGTAAYIKETGDFSILDEPVPFDNEPGSEVPLFEHLTRSFEFTVTHRGPHG 479 (822)
T ss_dssp HHHHHHHHHHHHHHHHCCGGGGGSEECSTTCTTCCEEHHHHHHHHHHHHHHSBCTTS
T ss_pred hHhHHHHHHHHHHHHHCCHHHHHhhhhhhccccccccHHHHHHHHHHHHHhcCCCCC
Confidence 7777777776552221111 00 1234578999999998665554
No 87
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=36.13 E-value=4e+02 Score=30.62 Aligned_cols=86 Identities=14% Similarity=0.022 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhhccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHHHHHhhhhCCCc--ch--
Q 006042 413 EPERLYDAVNFLLSLQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEAFMLFKKLYPHH--RK-- 488 (663)
Q Consensus 413 ~~~~i~~a~~wLl~~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~aL~~~~~~~~~~--~~-- 488 (663)
.++.+++.+..+.+.|.+ ||.....-.... ..+...+...++|.+...+.++..+-+...+. -+
T Consensus 373 ~p~~~r~~il~~~~~Q~~-dG~~~h~~~p~~-----------~~g~~~~~~~~~D~~lW~i~av~~Y~~~TGD~~~L~e~ 440 (811)
T 3qde_A 373 IPERARERLLDLAATQLE-DGSAYHQYQPLT-----------KKGNNEIGSNFNDDPLWLILATAAYIKETGDYSILKEQ 440 (811)
T ss_dssp CHHHHHHHHHHHHTTBCT-TSCBCSEECTTT-----------CCEECTTCCCBTTHHHHHHHHHHHHHHHHCCGGGGGSE
T ss_pred CHHHHHHHHHHHHhhccc-CCCccceecCCC-----------CCCCCCCCCCcccchhHHHHHHHHHHHHHCCHHHHHhh
Confidence 467889999999999999 998743211000 00111111345777777777776553221111 00
Q ss_pred ----------HHHHHHHHHHHHHHHHhcccCC
Q 006042 489 ----------KEIENFIVKAVHYIEDEQTADG 510 (663)
Q Consensus 489 ----------~~~~~~i~rav~~L~~~Q~~DG 510 (663)
..+-+.++++++|+.+...++|
T Consensus 441 ~p~~~~~~~~~tl~eh~~ra~~~~~~~~g~~G 472 (811)
T 3qde_A 441 VPFNNDPSKADTMFEHLTRSFYHVVNNLGPHG 472 (811)
T ss_dssp EEETTEEEEEEEHHHHHHHHHHHHHTCBCTTS
T ss_pred hhhhcCCcccccHHHHHHHHHHHHHhcCCCCC
Confidence 1234578999999997665554
No 88
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.90 E-value=38 Score=25.56 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHhcCccC
Q 006042 588 LAVLSLISAGQADRDPTPIHRGVKLLINSQLEN 620 (663)
Q Consensus 588 ~ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~d 620 (663)
-|..||.+.+. .|+|+++||-++..+.
T Consensus 35 qA~kALKat~~------NvErAaDWLFSH~D~~ 61 (63)
T 1wgn_A 35 CVLRAMKKKGE------NIEQILDYLFAHSGPS 61 (63)
T ss_dssp HHHHHHHHHCS------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHcCC------CHHHHHHHHHhCCCCC
Confidence 56677776653 3999999999987764
No 89
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=30.27 E-value=4.5e+02 Score=26.68 Aligned_cols=162 Identities=12% Similarity=-0.039 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHc---CCCCchHHHHHHHHHHHHhhcccCCCCCCccccCCCCCCCcccCccCCCCCCCccchHHHHHH
Q 006042 320 TWDTALGLQALMAC---NIADEVESVLGKGHDYLKKAQIRDNPVGDYKGNFRHFSKGAWTFSDQDHGWQVSDCTAEGLKC 396 (663)
Q Consensus 320 vwdTal~~~AL~~a---g~~~~~~~~l~ka~~wL~~~Q~~~~~~G~~~~~~~~~~~GgW~fs~~~~~~pd~d~Ta~al~a 396 (663)
..|.++.++++.++ --.+++....++..++|....-.+ . ..||..++.....+..+-..+.++.+
T Consensus 91 ~DD~a~~~la~~~aye~t~~~~yL~~A~~l~~~l~~~~wd~-~-----------~gGGi~W~~~~~~~knaisN~~~~~~ 158 (349)
T 3k7x_A 91 YDDMLWNALAAYRLYKATGKSIYLEDAQLVWQDLVDTGWND-I-----------MGGGFAWRRPQMYYKNTPVNAPFIIL 158 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCS-G-----------GGSCBEEETTEEEEEEHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhCCCC-C-----------CCCceEecCCCccccchhhHHHHHHH
Confidence 46888877777653 112233444555566662222111 0 12343332211112222245666666
Q ss_pred HHHhcCCCCcccCCCCCHHHHHHHHHHHHh-hccccCCCccccccCCchhhhhhcCcccccccccccccccCcHHHHHHH
Q 006042 397 VLQLSLMPPEIVGEKMEPERLYDAVNFLLS-LQDEKTGGLAVWERAGASLLLEWLNPVEFLEDLIVEHTYVECTASAIEA 475 (663)
Q Consensus 397 L~~~~~~~~~~~~~~~~~~~i~~a~~wLl~-~Qn~~DGgw~~~~~~~~~~~l~~~~~~e~f~~~~~d~~~~~~Ta~~L~a 475 (663)
+..+.+ ..+++.+.+..+++.+|+.+ +.++ +|.+ ++..... . . +........++..+.+|.+
T Consensus 159 la~l~~----~tgd~~Yl~~A~~~~~w~~~~l~d~-~g~v--~Dg~~~~-~-----~----g~~~~~~~~tYnqg~~l~g 221 (349)
T 3k7x_A 159 SCWLYN----ELNETKYLEWAMKTYEWQTKVLVRE-DGFV--EDGINRL-E-----D----GTIDYEWKFTYNQGVYIGA 221 (349)
T ss_dssp HHHHHH----HHCCHHHHHHHHHHHHHHHHHHBCT-TSCB--CCEECTT-S-----S----SCBCTTCCCHHHHHHHHHH
T ss_pred HHHHHH----HhCCHHHHHHHHHHHHHHHhcCCCC-CCeE--ecCCccC-C-----C----CccCCcCeeeHHHHHHHHH
Confidence 655543 12334456677888999976 3455 6543 3321100 0 0 0000011356678889998
Q ss_pred HHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcc
Q 006042 476 FMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWY 513 (663)
Q Consensus 476 L~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~ 513 (663)
+..+.+...+ +...+...+.++.+.+..-++|-..
T Consensus 222 ~~~LY~~T~d---~~yl~~a~~l~~~~~~~f~~~gi~~ 256 (349)
T 3k7x_A 222 NLELYRITKE---AIYLDTANKTAAISLKELTEDGIFK 256 (349)
T ss_dssp HHHHHHHHCC---HHHHHHHHHHHHHHHHHHEETTEEC
T ss_pred HHHHHHhhCc---HHHHHHHHHHHHHHHHHhccCCccc
Confidence 8887644222 3345566777777766655666554
No 90
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=30.18 E-value=1.1e+02 Score=32.29 Aligned_cols=63 Identities=13% Similarity=0.045 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhhCCCcchHHHHHHHHHHHHHHHHhcccCCCcccCC------CCcchhHHHHHHHHHHHc
Q 006042 469 TASAIEAFMLFKKLYPHHRKKEIENFIVKAVHYIEDEQTADGSWYGNW------GICFIYGTCFALGGLQVA 534 (663)
Q Consensus 469 Ta~~L~aL~~~~~~~~~~~~~~~~~~i~rav~~L~~~Q~~DGsw~g~w------g~~~~Y~T~~aL~aL~~~ 534 (663)
++-++.+|..+... ...+...+.++++++|+.+.+.++|.|...- -+...+|+.-.+.+|..+
T Consensus 233 ~aGI~~~Ll~~~~~---~~~~~~~~~i~~~l~~l~~~~~~~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~ 301 (411)
T 3e6u_A 233 LAGIYYYLMQPSLQ---VSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQA 301 (411)
T ss_dssp HHHHHHHHTCGGGC---CCHHHHHHTHHHHHHHHHHTCCTTSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh---cChHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccCccccccCCcHHHHHHHHHH
Confidence 34444555544322 2234567789999999999998899887421 112445555555555443
No 91
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.82 E-value=56 Score=25.16 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=19.5
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHhcCccCC
Q 006042 589 AVLSLISAGQADRDPTPIHRGVKLLINSQLENG 621 (663)
Q Consensus 589 ALlaL~~ag~~~~~~~~v~r~i~~L~~~Q~~dG 621 (663)
.+.||...+- .|+++|+||.+.+...|
T Consensus 37 n~~AL~at~G------nve~Ave~L~~~~~~~~ 63 (67)
T 2dna_A 37 NLQALIATDG------DTNAAIYKLKSSQGFSG 63 (67)
T ss_dssp HHHHHHHTTS------CHHHHHHHHHHCCSSSC
T ss_pred HHHHHHHcCC------CHHHHHHHHHhCCCccC
Confidence 3566666542 38899999999877655
No 92
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.18 E-value=59 Score=25.55 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=21.0
Q ss_pred HHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCC
Q 006042 526 FALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDD 558 (663)
Q Consensus 526 ~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 558 (663)
.++.||...+.. +++|++||.+.+.++
T Consensus 46 ~~~~AL~~t~Gn------ve~Ave~L~~~~~~~ 72 (74)
T 1vej_A 46 ANLQALVATDGD------IHAAIEMLLGASGPS 72 (74)
T ss_dssp HHHHHHHHTTSC------HHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhCCC------HHHHHHHHHhCCCCC
Confidence 467888886543 789999999987665
No 93
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.12 E-value=61 Score=24.57 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCC
Q 006042 525 CFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSD 557 (663)
Q Consensus 525 ~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 557 (663)
..|..||...+. ..+++|++||++++..
T Consensus 34 ~~a~~AL~~t~~-----~nve~A~ewL~~~~~d 61 (64)
T 2cpw_A 34 ARAQKALASTGG-----RSVQTACDWLFSHSGP 61 (64)
T ss_dssp HHHHHHHHHTTT-----SCHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHcCC-----CCHHHHHHHHHhCCCC
Confidence 446677777653 1378999999998864
No 94
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=26.06 E-value=65 Score=25.23 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCC
Q 006042 524 TCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDD 558 (663)
Q Consensus 524 T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 558 (663)
.-.++.||...+.. +++|++||++.|.++
T Consensus 43 r~~a~~AL~~~~~n------ve~Ave~Ll~~~~p~ 71 (73)
T 1vg5_A 43 RTQVEVALAAADDD------LTVAVEILMSQSGPS 71 (73)
T ss_dssp HHHHHHHHHHHTSC------HHHHHHHHHTCSCSS
T ss_pred HHHHHHHHHHhCCC------HHHHHHHHHHCCCCC
Confidence 34577888877543 789999999988764
No 95
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=24.41 E-value=81 Score=24.56 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCC
Q 006042 524 TCFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSD 557 (663)
Q Consensus 524 T~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 557 (663)
...|..||...+. .+++|++||.+++..
T Consensus 43 ~~~a~~AL~~t~~------nve~Ave~L~~~~~d 70 (73)
T 1wiv_A 43 EDVARKALKASGG------DIEKATDWVFNNSGP 70 (73)
T ss_dssp HHHHHHHHHHTTS------CHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHhCC------CHHHHHHHHHhCCCC
Confidence 3457788888654 378999999998864
No 96
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.39 E-value=85 Score=23.69 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=21.2
Q ss_pred HHHHHHHHHcCCCcCChHHHHHHHHHHHhhcCCC
Q 006042 525 CFALGGLQVAGKTYNNCLAIRRAVDFLLNAQSDD 558 (663)
Q Consensus 525 ~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~D 558 (663)
..|+.||...+. .+++|++||++.+.+.
T Consensus 24 ~~a~~AL~~~~~------nve~A~e~L~~~~~~~ 51 (63)
T 1wji_A 24 EASRQALMDNGN------NLEAALNVLLTSNKQK 51 (63)
T ss_dssp HHHHHHHHHTTS------CHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHhCC------CHHHHHHHHHHCCCCc
Confidence 456788887654 3789999999987653
No 97
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.90 E-value=87 Score=22.84 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=19.1
Q ss_pred HHHHHHHHcCCCcCChHHHHHHHHHHHhhcCC
Q 006042 526 FALGGLQVAGKTYNNCLAIRRAVDFLLNAQSD 557 (663)
Q Consensus 526 ~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q~~ 557 (663)
.++.||...+-. +++|++||.+....
T Consensus 26 ~n~~AL~~~~Gd------v~~Ave~L~~~~~~ 51 (54)
T 2dah_A 26 ANLQALIATGGD------VDAAVEKLRQSSGP 51 (54)
T ss_dssp HHHHHHHHHTSC------HHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCC------HHHHHHHHHhCCCc
Confidence 356778776543 78999999987644
No 98
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=21.75 E-value=72 Score=23.11 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCcCChHHHHHHHHHHHhhc
Q 006042 525 CFALGGLQVAGKTYNNCLAIRRAVDFLLNAQ 555 (663)
Q Consensus 525 ~~aL~aL~~~g~~~~~~~~i~ra~~~Ll~~Q 555 (663)
-.++.||...+.. +++|++||.+.+
T Consensus 27 ~~~~~AL~~t~gn------ve~Ave~L~~~~ 51 (53)
T 2knz_A 27 EANLQALIATGGD------INAAIERLLGSQ 51 (53)
T ss_dssp HHHHHHHHHHTSC------HHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC------HHHHHHHHHHcC
Confidence 4577888887643 789999999865
Done!