Query 006044
Match_columns 663
No_of_seqs 393 out of 2268
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 17:32:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006044.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006044hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.8 2.3E-20 5E-25 189.7 16.3 118 34-154 1-120 (229)
2 COG4753 Response regulator con 99.8 1.5E-20 3.3E-25 207.0 13.8 119 33-153 1-123 (475)
3 COG4566 TtrR Response regulato 99.8 5.4E-20 1.2E-24 180.6 14.3 170 31-203 2-172 (202)
4 COG2197 CitB Response regulato 99.8 1.4E-19 2.9E-24 181.6 16.3 170 34-205 1-180 (211)
5 COG4565 CitB Response regulato 99.8 1.9E-18 4.1E-23 172.5 19.4 119 34-154 1-122 (224)
6 COG2204 AtoC Response regulato 99.8 3.2E-18 7E-23 188.7 16.9 119 33-153 4-123 (464)
7 PLN03162 golden-2 like transcr 99.8 8.1E-19 1.8E-23 184.3 9.4 66 217-282 232-297 (526)
8 PF00072 Response_reg: Respons 99.8 2.1E-17 4.6E-22 144.4 15.8 110 36-147 1-112 (112)
9 COG3437 Response regulator con 99.8 8.3E-18 1.8E-22 178.5 14.6 232 31-328 12-249 (360)
10 PRK10046 dpiA two-component re 99.7 8.7E-17 1.9E-21 160.3 19.3 122 30-153 1-125 (225)
11 PRK10840 transcriptional regul 99.7 1.1E-16 2.4E-21 157.7 18.7 170 33-204 3-181 (216)
12 PRK11466 hybrid sensory histid 99.7 7.5E-17 1.6E-21 189.7 18.2 151 1-152 630-800 (914)
13 PRK15347 two component system 99.7 1.1E-16 2.5E-21 187.7 18.7 117 33-151 690-811 (921)
14 PRK11091 aerobic respiration c 99.7 1E-16 2.2E-21 186.2 17.6 149 1-152 473-645 (779)
15 TIGR02956 TMAO_torS TMAO reduc 99.7 1.2E-16 2.7E-21 188.6 18.1 150 1-152 651-823 (968)
16 PRK10841 hybrid sensory kinase 99.7 4E-16 8.6E-21 186.1 19.6 119 33-153 801-920 (924)
17 PRK09483 response regulator; P 99.7 7.3E-16 1.6E-20 148.9 17.7 169 33-203 1-178 (217)
18 COG0784 CheY FOG: CheY-like re 99.7 1.1E-15 2.4E-20 136.7 17.1 120 31-151 3-125 (130)
19 PRK09959 hybrid sensory histid 99.7 3.9E-16 8.4E-21 189.1 18.4 149 1-151 904-1075(1197)
20 PRK11107 hybrid sensory histid 99.7 5.1E-16 1.1E-20 181.9 18.0 118 33-152 667-787 (919)
21 PRK10360 DNA-binding transcrip 99.7 7.4E-16 1.6E-20 146.6 14.1 162 33-200 1-164 (196)
22 PRK10430 DNA-binding transcrip 99.7 5.8E-15 1.3E-19 148.3 21.0 119 33-151 1-122 (239)
23 PRK10529 DNA-binding transcrip 99.7 2.7E-15 5.8E-20 146.1 17.5 118 34-153 2-119 (225)
24 PLN03029 type-a response regul 99.7 2E-15 4.3E-20 152.1 17.0 122 32-153 7-149 (222)
25 PRK10643 DNA-binding transcrip 99.7 6.5E-15 1.4E-19 141.8 18.8 118 34-153 1-119 (222)
26 PRK10336 DNA-binding transcrip 99.6 6.7E-15 1.5E-19 141.8 18.2 153 34-188 1-164 (219)
27 PRK09958 DNA-binding transcrip 99.6 5.4E-15 1.2E-19 141.5 17.5 164 34-199 1-169 (204)
28 PRK11173 two-component respons 99.6 5.3E-15 1.2E-19 146.2 17.4 118 34-153 4-121 (237)
29 PRK10816 DNA-binding transcrip 99.6 8.1E-15 1.7E-19 142.8 17.3 118 34-153 1-119 (223)
30 PRK11517 transcriptional regul 99.6 1.6E-14 3.4E-19 139.9 18.7 118 34-153 1-118 (223)
31 COG3706 PleD Response regulato 99.6 5.9E-15 1.3E-19 162.0 17.3 122 32-155 131-255 (435)
32 PRK10766 DNA-binding transcrip 99.6 1.1E-14 2.4E-19 141.4 17.2 118 34-153 3-120 (221)
33 PRK09836 DNA-binding transcrip 99.6 1.2E-14 2.6E-19 141.9 17.3 117 34-152 1-118 (227)
34 PRK11475 DNA-binding transcrip 99.6 3E-15 6.4E-20 150.2 12.3 155 46-204 3-165 (207)
35 PRK10701 DNA-binding transcrip 99.6 1.6E-14 3.4E-19 142.9 17.3 118 34-153 2-119 (240)
36 PRK10955 DNA-binding transcrip 99.6 1.7E-14 3.7E-19 140.5 17.0 117 34-153 2-118 (232)
37 TIGR02154 PhoB phosphate regul 99.6 2E-14 4.4E-19 138.4 17.1 119 33-153 2-123 (226)
38 PRK13856 two-component respons 99.6 2.4E-14 5.1E-19 142.5 17.3 118 34-153 2-120 (241)
39 CHL00148 orf27 Ycf27; Reviewed 99.6 2.9E-14 6.3E-19 139.6 17.6 120 32-153 5-124 (240)
40 PRK10161 transcriptional regul 99.6 3.1E-14 6.8E-19 139.2 17.3 117 34-152 3-122 (229)
41 COG3947 Response regulator con 99.6 2.8E-15 6.1E-20 155.5 10.4 115 34-152 1-116 (361)
42 PRK09935 transcriptional regul 99.6 6.6E-14 1.4E-18 133.7 18.3 167 33-201 3-177 (210)
43 PRK15411 rcsA colanic acid cap 99.6 2.8E-14 6.1E-19 142.6 15.8 162 34-205 1-169 (207)
44 PRK11083 DNA-binding response 99.6 4.4E-14 9.5E-19 136.6 16.6 119 33-153 3-122 (228)
45 TIGR03787 marine_sort_RR prote 99.6 5.9E-14 1.3E-18 136.9 17.4 117 35-153 2-121 (227)
46 PRK09468 ompR osmolarity respo 99.6 5.1E-14 1.1E-18 138.9 17.2 119 33-153 5-124 (239)
47 KOG0519 Sensory transduction h 99.6 8.5E-15 1.8E-19 172.0 13.4 120 30-150 663-784 (786)
48 PRK10100 DNA-binding transcrip 99.6 7.5E-15 1.6E-19 148.1 11.1 168 32-205 9-187 (216)
49 TIGR01387 cztR_silR_copR heavy 99.6 1.1E-13 2.3E-18 133.0 17.9 116 36-153 1-117 (218)
50 PRK11697 putative two-componen 99.6 5.5E-14 1.2E-18 139.4 16.2 116 33-152 1-118 (238)
51 PRK14084 two-component respons 99.5 1.2E-13 2.6E-18 138.1 16.6 116 34-153 1-119 (246)
52 TIGR01557 myb_SHAQKYF myb-like 99.5 8.2E-15 1.8E-19 119.3 6.6 55 220-274 1-56 (57)
53 PRK13837 two-component VirA-li 99.5 1.2E-13 2.6E-18 162.7 18.7 149 1-152 643-814 (828)
54 PRK09581 pleD response regulat 99.5 3.8E-14 8.2E-19 151.7 13.0 119 31-152 153-274 (457)
55 PRK15369 two component system 99.5 4.1E-13 8.8E-18 126.5 17.8 170 32-203 2-179 (211)
56 PRK15479 transcriptional regul 99.5 5.2E-13 1.1E-17 128.6 18.8 118 34-153 1-119 (221)
57 TIGR02875 spore_0_A sporulatio 99.5 2E-13 4.4E-18 138.4 16.5 118 33-152 2-124 (262)
58 COG4567 Response regulator con 99.5 1E-13 2.2E-18 132.5 12.6 112 35-148 11-123 (182)
59 PRK10651 transcriptional regul 99.5 5.3E-13 1.1E-17 127.5 17.7 168 32-201 5-183 (216)
60 PRK09390 fixJ response regulat 99.5 1.6E-13 3.5E-18 128.7 13.7 119 32-152 2-121 (202)
61 PRK10403 transcriptional regul 99.5 3.7E-13 8.1E-18 128.1 16.1 165 33-199 6-179 (215)
62 PRK10365 transcriptional regul 99.5 2.1E-13 4.5E-18 148.4 15.3 119 32-152 4-123 (441)
63 PRK11361 acetoacetate metaboli 99.5 4.1E-13 8.8E-18 147.0 16.6 120 30-151 1-121 (457)
64 PRK10710 DNA-binding transcrip 99.5 1E-12 2.3E-17 128.6 17.6 117 34-152 11-127 (240)
65 PRK15115 response regulator Gl 99.5 5E-13 1.1E-17 146.2 15.9 118 33-152 5-123 (444)
66 PRK10923 glnG nitrogen regulat 99.5 7.6E-13 1.6E-17 145.9 17.3 117 34-152 4-121 (469)
67 PRK13557 histidine kinase; Pro 99.5 1.1E-12 2.4E-17 143.4 17.1 150 1-151 362-534 (540)
68 PRK12555 chemotaxis-specific m 99.5 8.9E-13 1.9E-17 140.0 15.8 102 34-137 1-106 (337)
69 TIGR02915 PEP_resp_reg putativ 99.5 9.9E-13 2.2E-17 143.9 15.9 112 36-151 1-118 (445)
70 TIGR01818 ntrC nitrogen regula 99.4 1.9E-12 4.2E-17 142.1 16.0 115 36-152 1-116 (463)
71 PRK10610 chemotaxis regulatory 99.4 1.1E-11 2.3E-16 106.0 17.0 118 33-152 5-126 (129)
72 PRK13435 response regulator; P 99.4 4.7E-12 1E-16 116.6 15.5 116 33-153 5-122 (145)
73 PRK09581 pleD response regulat 99.4 6.1E-12 1.3E-16 134.7 17.8 118 34-153 3-123 (457)
74 PRK00742 chemotaxis-specific m 99.4 7.3E-12 1.6E-16 133.8 16.4 104 33-138 3-110 (354)
75 COG2201 CheB Chemotaxis respon 99.4 3.4E-12 7.5E-17 136.9 13.0 104 33-138 1-108 (350)
76 PRK13558 bacterio-opsin activa 99.4 5.4E-12 1.2E-16 144.5 15.0 118 33-152 7-127 (665)
77 PRK09191 two-component respons 99.3 8.3E-11 1.8E-15 118.3 15.8 115 34-152 138-254 (261)
78 COG3707 AmiR Response regulato 99.2 8.3E-11 1.8E-15 116.6 12.4 119 32-152 4-123 (194)
79 cd00156 REC Signal receiver do 99.2 3E-10 6.4E-15 92.1 12.9 111 37-149 1-112 (113)
80 PRK10693 response regulator of 99.1 5.8E-10 1.3E-14 117.5 12.5 90 62-153 2-93 (303)
81 COG3279 LytT Response regulato 99.1 7.1E-10 1.5E-14 114.1 10.9 116 33-152 1-119 (244)
82 PRK15029 arginine decarboxylas 98.9 9.1E-09 2E-13 120.6 14.2 115 34-150 1-131 (755)
83 PRK11107 hybrid sensory histid 98.2 1.8E-05 3.9E-10 93.7 14.1 144 1-150 486-650 (919)
84 PRK10618 phosphotransfer inter 98.2 2.3E-06 5.1E-11 102.8 6.6 85 1-94 640-741 (894)
85 COG3706 PleD Response regulato 98.0 5E-06 1.1E-10 92.4 5.3 94 57-153 12-105 (435)
86 smart00448 REC cheY-homologous 97.4 0.001 2.2E-08 46.7 8.2 55 34-90 1-55 (55)
87 PF06490 FleQ: Flagellar regul 97.3 0.0017 3.6E-08 59.4 9.9 106 35-149 1-107 (109)
88 cd02071 MM_CoA_mut_B12_BD meth 95.8 0.25 5.4E-06 45.7 13.4 110 35-146 1-120 (122)
89 PF03709 OKR_DC_1_N: Orn/Lys/A 95.5 0.12 2.6E-06 47.6 10.0 105 45-151 5-113 (115)
90 PRK02261 methylaspartate mutas 95.5 0.47 1E-05 45.3 14.2 115 33-150 3-134 (137)
91 cd02067 B12-binding B12 bindin 95.1 0.25 5.4E-06 45.0 10.7 94 40-135 10-109 (119)
92 TIGR00640 acid_CoA_mut_C methy 94.3 2 4.3E-05 40.9 14.9 116 34-151 3-128 (132)
93 PF00249 Myb_DNA-binding: Myb- 92.0 0.44 9.6E-06 37.0 5.6 48 222-272 1-48 (48)
94 PRK15399 lysine decarboxylase 91.3 1.9 4.2E-05 51.6 12.3 114 34-151 1-122 (713)
95 PF02310 B12-binding: B12 bind 90.9 4.6 0.0001 36.3 11.9 92 40-134 11-110 (121)
96 PRK15320 transcriptional activ 90.5 0.88 1.9E-05 46.6 7.3 167 35-205 3-196 (251)
97 PRK15400 lysine decarboxylase 90.3 2.3 4.9E-05 51.0 11.7 113 34-150 1-121 (714)
98 TIGR03815 CpaE_hom_Actino heli 90.0 0.88 1.9E-05 48.6 7.4 83 58-149 2-85 (322)
99 cd04728 ThiG Thiazole synthase 89.7 1.8 3.9E-05 45.5 9.2 111 33-151 93-225 (248)
100 TIGR01501 MthylAspMutase methy 89.5 8.4 0.00018 37.0 12.9 109 40-150 12-132 (134)
101 PRK00208 thiG thiazole synthas 88.8 3.9 8.4E-05 43.2 10.8 110 33-151 93-225 (250)
102 cd02070 corrinoid_protein_B12- 85.1 11 0.00024 37.9 11.5 98 33-135 82-191 (201)
103 PRK01130 N-acetylmannosamine-6 83.9 18 0.00039 36.6 12.5 83 49-134 110-201 (221)
104 PRK00043 thiE thiamine-phospha 82.6 18 0.00038 35.8 11.7 69 62-134 110-187 (212)
105 cd02069 methionine_synthase_B1 81.4 14 0.00031 37.8 10.8 103 32-136 87-202 (213)
106 cd04729 NanE N-acetylmannosami 81.0 19 0.00042 36.4 11.5 73 60-135 127-206 (219)
107 PF01408 GFO_IDH_MocA: Oxidore 79.8 44 0.00095 29.7 12.5 37 115-151 73-111 (120)
108 PF10087 DUF2325: Uncharacteri 78.3 16 0.00034 32.5 8.8 90 35-125 1-93 (97)
109 cd02068 radical_SAM_B12_BD B12 77.8 21 0.00045 32.9 9.7 105 44-150 3-111 (127)
110 cd02072 Glm_B12_BD B12 binding 77.7 49 0.0011 31.6 12.3 105 40-147 10-127 (128)
111 PF01596 Methyltransf_3: O-met 75.4 13 0.00027 38.0 8.2 84 4-88 37-130 (205)
112 PRK03958 tRNA 2'-O-methylase; 74.5 31 0.00067 34.8 10.4 93 35-135 33-128 (176)
113 TIGR00007 phosphoribosylformim 73.3 40 0.00087 34.1 11.3 68 65-134 146-217 (230)
114 TIGR02370 pyl_corrinoid methyl 72.3 29 0.00064 34.9 9.9 97 34-135 85-193 (197)
115 COG0512 PabA Anthranilate/para 72.2 5.7 0.00012 40.4 4.7 77 33-113 1-81 (191)
116 PRK10558 alpha-dehydro-beta-de 71.9 36 0.00078 35.9 10.8 100 48-149 9-113 (256)
117 TIGR03239 GarL 2-dehydro-3-deo 71.5 46 0.001 35.0 11.5 99 49-149 3-106 (249)
118 PRK12724 flagellar biosynthesi 70.9 22 0.00047 40.5 9.4 113 11-125 229-353 (432)
119 COG2185 Sbm Methylmalonyl-CoA 70.7 1.1E+02 0.0023 30.1 12.8 115 32-150 11-137 (143)
120 PRK10128 2-keto-3-deoxy-L-rham 70.5 45 0.00097 35.6 11.2 100 48-149 8-112 (267)
121 cd04724 Tryptophan_synthase_al 68.8 20 0.00044 37.2 8.1 57 93-149 63-125 (242)
122 cd04730 NPD_like 2-Nitropropan 68.6 69 0.0015 32.3 11.8 71 62-135 108-185 (236)
123 PRK09426 methylmalonyl-CoA mut 68.5 60 0.0013 39.3 12.9 116 34-151 583-708 (714)
124 TIGR01334 modD putative molybd 68.5 21 0.00046 38.3 8.3 93 36-132 159-260 (277)
125 CHL00162 thiG thiamin biosynth 67.0 1.1E+02 0.0024 32.8 12.9 114 33-151 107-239 (267)
126 PRK07896 nicotinate-nucleotide 66.4 28 0.00061 37.6 8.8 93 36-132 173-271 (289)
127 smart00426 TEA TEA domain. 64.2 5.3 0.00012 34.3 2.2 47 224-270 5-67 (68)
128 COG4999 Uncharacterized domain 64.2 33 0.00072 32.9 7.6 105 32-144 10-119 (140)
129 PLN02591 tryptophan synthase 64.1 23 0.00051 37.3 7.5 58 93-150 65-128 (250)
130 PF03602 Cons_hypoth95: Conser 63.3 28 0.00062 34.7 7.6 69 34-102 66-138 (183)
131 cd03114 ArgK-like The function 63.2 6.8 0.00015 37.6 3.1 44 66-115 80-123 (148)
132 cd00564 TMP_TenI Thiamine mono 62.8 52 0.0011 31.6 9.2 70 62-135 101-178 (196)
133 PRK13111 trpA tryptophan synth 62.7 23 0.0005 37.5 7.2 57 93-149 75-138 (258)
134 TIGR03151 enACPred_II putative 62.6 65 0.0014 34.8 10.7 82 50-134 102-189 (307)
135 cd04727 pdxS PdxS is a subunit 62.4 47 0.001 35.9 9.4 89 61-152 117-247 (283)
136 PF09936 Methyltrn_RNA_4: SAM- 62.2 70 0.0015 32.6 10.0 100 35-139 44-162 (185)
137 TIGR02311 HpaI 2,4-dihydroxyhe 62.1 86 0.0019 32.9 11.3 99 49-149 3-106 (249)
138 cd00331 IGPS Indole-3-glycerol 61.4 1.6E+02 0.0035 29.5 12.8 76 56-134 120-200 (217)
139 TIGR00262 trpA tryptophan synt 61.3 30 0.00065 36.4 7.8 57 93-149 73-136 (256)
140 PRK01911 ppnK inorganic polyph 61.0 39 0.00085 36.4 8.7 102 34-154 1-122 (292)
141 PRK10742 putative methyltransf 59.5 23 0.00051 37.5 6.5 57 33-92 110-177 (250)
142 PRK11840 bifunctional sulfur c 57.7 1.5E+02 0.0032 32.8 12.4 114 33-151 167-299 (326)
143 PRK00748 1-(5-phosphoribosyl)- 57.3 51 0.0011 33.3 8.4 67 66-134 148-219 (233)
144 TIGR01037 pyrD_sub1_fam dihydr 56.8 1.4E+02 0.0031 31.5 12.1 59 95-153 223-287 (300)
145 PRK11889 flhF flagellar biosyn 56.5 48 0.001 37.8 8.6 74 14-87 250-328 (436)
146 cd04726 KGPDC_HPS 3-Keto-L-gul 56.0 1.9E+02 0.0041 28.4 12.0 99 33-135 77-186 (202)
147 PLN02871 UDP-sulfoquinovose:DA 55.8 1.3E+02 0.0028 33.7 12.1 107 33-151 290-399 (465)
148 TIGR00343 pyridoxal 5'-phospha 55.7 71 0.0015 34.6 9.4 60 93-152 184-250 (287)
149 cd03823 GT1_ExpE7_like This fa 55.5 2E+02 0.0044 29.0 12.5 66 80-151 263-328 (359)
150 TIGR01761 thiaz-red thiazoliny 55.5 1.2E+02 0.0026 33.5 11.4 105 32-151 2-113 (343)
151 PTZ00314 inosine-5'-monophosph 55.4 94 0.002 36.0 11.1 99 33-134 253-372 (495)
152 PRK05718 keto-hydroxyglutarate 55.3 1.3E+02 0.0029 31.0 11.0 90 51-143 10-101 (212)
153 PRK05458 guanosine 5'-monophos 55.3 1.6E+02 0.0034 32.5 12.2 98 35-135 113-230 (326)
154 CHL00200 trpA tryptophan synth 55.1 40 0.00086 35.8 7.4 57 93-149 78-140 (263)
155 PRK13587 1-(5-phosphoribosyl)- 54.4 68 0.0015 33.2 8.9 67 67-134 151-220 (234)
156 PRK07259 dihydroorotate dehydr 54.3 1.4E+02 0.0029 31.8 11.4 59 94-152 222-286 (301)
157 PRK05848 nicotinate-nucleotide 54.3 53 0.0012 35.2 8.2 90 36-133 155-255 (273)
158 cd04723 HisA_HisF Phosphoribos 54.0 66 0.0014 33.2 8.7 68 65-134 147-217 (233)
159 TIGR00566 trpG_papA glutamine 53.5 48 0.001 32.9 7.4 74 36-113 2-79 (188)
160 PRK07649 para-aminobenzoate/an 53.4 15 0.00033 36.9 3.9 49 36-86 2-50 (195)
161 PRK00278 trpC indole-3-glycero 53.2 2.4E+02 0.0051 29.8 12.8 94 37-134 139-239 (260)
162 TIGR00381 cdhD CO dehydrogenas 53.1 2.3E+02 0.0049 32.2 13.0 123 18-149 100-236 (389)
163 cd01424 MGS_CPS_II Methylglyox 53.1 1E+02 0.0023 27.6 8.9 25 39-63 8-32 (110)
164 PRK08385 nicotinate-nucleotide 53.0 1.2E+02 0.0027 32.6 10.7 93 36-133 157-257 (278)
165 cd03313 enolase Enolase: Enola 52.5 1E+02 0.0023 34.6 10.6 105 40-147 210-347 (408)
166 PRK05567 inosine 5'-monophosph 52.2 1.1E+02 0.0025 35.0 11.0 99 32-134 239-359 (486)
167 PRK12726 flagellar biosynthesi 51.8 71 0.0015 36.2 9.0 56 32-87 233-293 (407)
168 PRK06096 molybdenum transport 51.6 49 0.0011 35.7 7.5 71 59-133 192-262 (284)
169 PF07688 KaiA: KaiA domain; I 51.3 65 0.0014 34.5 8.1 76 36-114 3-79 (283)
170 PLN02274 inosine-5'-monophosph 51.0 1E+02 0.0022 35.9 10.4 100 32-134 259-379 (505)
171 cd04722 TIM_phosphate_binding 50.3 1.1E+02 0.0023 28.8 9.0 55 80-134 137-198 (200)
172 PRK05749 3-deoxy-D-manno-octul 50.2 1.6E+02 0.0035 32.3 11.5 54 94-151 334-387 (425)
173 PRK06731 flhF flagellar biosyn 49.7 62 0.0013 34.5 7.9 54 33-87 103-162 (270)
174 PRK07428 nicotinate-nucleotide 49.3 77 0.0017 34.2 8.5 94 35-133 168-269 (288)
175 PRK14974 cell division protein 48.9 92 0.002 34.3 9.2 98 32-133 167-285 (336)
176 cd02065 B12-binding_like B12 b 48.8 1.2E+02 0.0025 27.2 8.5 70 40-111 10-85 (125)
177 KOG1601 GATA-4/5/6 transcripti 48.8 2.2 4.8E-05 42.6 -3.0 112 37-150 19-137 (340)
178 TIGR02026 BchE magnesium-proto 48.8 1.4E+02 0.003 34.3 11.1 108 42-152 21-138 (497)
179 cd04732 HisA HisA. Phosphorib 48.6 2E+02 0.0043 29.0 11.1 69 65-134 147-218 (234)
180 PRK06774 para-aminobenzoate sy 48.3 22 0.00048 35.2 4.1 74 36-113 2-79 (191)
181 PRK12704 phosphodiesterase; Pr 48.2 19 0.00042 41.8 4.1 45 108-152 251-297 (520)
182 COG0157 NadC Nicotinate-nucleo 48.0 1.4E+02 0.0029 32.4 10.0 89 36-131 161-258 (280)
183 PRK05703 flhF flagellar biosyn 47.9 1.5E+02 0.0033 33.6 11.0 92 32-124 250-350 (424)
184 PF04321 RmlD_sub_bind: RmlD s 47.5 69 0.0015 33.8 7.8 80 34-115 1-102 (286)
185 PRK06843 inosine 5-monophospha 47.4 1.8E+02 0.0039 33.1 11.3 100 32-134 164-284 (404)
186 PRK06552 keto-hydroxyglutarate 47.3 1.7E+02 0.0037 30.1 10.4 91 52-144 9-103 (213)
187 TIGR00735 hisF imidazoleglycer 47.3 1.9E+02 0.0041 30.1 10.9 78 67-146 158-246 (254)
188 PF01729 QRPTase_C: Quinolinat 47.2 60 0.0013 32.3 6.8 94 36-133 53-153 (169)
189 PRK15484 lipopolysaccharide 1, 46.8 3.6E+02 0.0078 29.4 13.4 76 66-151 267-343 (380)
190 cd03813 GT1_like_3 This family 46.7 1.7E+02 0.0036 33.1 11.1 65 80-151 371-441 (475)
191 TIGR00262 trpA tryptophan synt 46.5 2.7E+02 0.006 29.3 12.0 104 33-136 115-228 (256)
192 TIGR03088 stp2 sugar transfera 46.1 1.6E+02 0.0034 31.3 10.4 65 80-151 273-337 (374)
193 PF05690 ThiG: Thiazole biosyn 45.9 1.1E+02 0.0024 32.5 8.7 115 33-151 93-225 (247)
194 cd00381 IMPDH IMPDH: The catal 45.7 1.9E+02 0.0041 31.6 11.0 99 32-134 105-225 (325)
195 PRK10669 putative cation:proto 45.6 1.7E+02 0.0036 34.0 11.2 94 33-136 440-535 (558)
196 PRK04452 acetyl-CoA decarbonyl 45.1 4.5E+02 0.0097 29.0 13.6 120 20-149 38-171 (319)
197 TIGR00693 thiE thiamine-phosph 45.0 1.4E+02 0.0031 29.2 9.2 70 61-134 101-179 (196)
198 PRK14960 DNA polymerase III su 44.9 1.5E+02 0.0033 35.9 10.7 73 79-153 118-193 (702)
199 PRK02155 ppnK NAD(+)/NADH kina 44.7 1.6E+02 0.0036 31.6 10.2 101 35-154 7-121 (291)
200 PLN02781 Probable caffeoyl-CoA 44.3 1E+02 0.0022 31.8 8.3 58 31-88 91-153 (234)
201 PRK02083 imidazole glycerol ph 43.6 2.3E+02 0.0051 29.3 10.9 77 67-146 156-244 (253)
202 cd06533 Glyco_transf_WecG_TagA 43.5 1.2E+02 0.0026 29.8 8.3 102 7-112 17-130 (171)
203 PRK09140 2-dehydro-3-deoxy-6-p 43.5 1.6E+02 0.0034 30.1 9.4 85 59-145 14-99 (206)
204 PRK14098 glycogen synthase; Pr 43.2 2.6E+02 0.0057 32.0 12.1 112 33-151 336-450 (489)
205 PF04131 NanE: Putative N-acet 42.9 2.1E+02 0.0045 29.4 10.0 100 32-135 63-173 (192)
206 TIGR00064 ftsY signal recognit 42.3 1.1E+02 0.0024 32.5 8.3 54 32-87 99-162 (272)
207 PRK07695 transcriptional regul 42.0 2.3E+02 0.0049 28.2 10.2 67 62-132 101-174 (201)
208 cd04962 GT1_like_5 This family 41.8 2.2E+02 0.0047 29.8 10.5 65 80-151 271-335 (371)
209 PRK09016 quinolinate phosphori 41.7 1.4E+02 0.003 32.5 9.1 90 36-132 182-277 (296)
210 TIGR03499 FlhF flagellar biosy 41.6 28 0.0006 37.0 3.8 53 34-87 225-280 (282)
211 TIGR01163 rpe ribulose-phospha 41.4 2.1E+02 0.0046 28.1 9.8 54 93-146 43-97 (210)
212 TIGR00734 hisAF_rel hisA/hisF 41.0 1.5E+02 0.0032 30.5 8.8 68 65-134 142-212 (221)
213 PRK06543 nicotinate-nucleotide 40.9 3.9E+02 0.0084 29.0 12.2 90 35-131 161-261 (281)
214 COG4122 Predicted O-methyltran 40.1 91 0.002 32.5 7.1 62 28-90 79-143 (219)
215 PLN02476 O-methyltransferase 40.1 1.2E+02 0.0027 32.6 8.3 59 30-88 140-203 (278)
216 PRK03372 ppnK inorganic polyph 40.0 3.1E+02 0.0067 29.9 11.4 103 33-154 5-130 (306)
217 PRK14949 DNA polymerase III su 39.6 75 0.0016 39.6 7.3 72 79-152 119-193 (944)
218 PF01081 Aldolase: KDPG and KH 39.6 82 0.0018 32.2 6.6 81 60-143 13-94 (196)
219 PRK14075 pnk inorganic polypho 39.6 2.2E+02 0.0048 30.0 10.1 94 34-154 1-96 (256)
220 TIGR00308 TRM1 tRNA(guanine-26 39.5 5.9E+02 0.013 28.5 13.9 111 34-152 70-190 (374)
221 cd00331 IGPS Indole-3-glycerol 39.5 1.3E+02 0.0029 30.2 8.1 67 83-149 49-117 (217)
222 PRK06978 nicotinate-nucleotide 39.3 1.8E+02 0.004 31.6 9.5 90 35-131 178-273 (294)
223 PRK07028 bifunctional hexulose 39.2 4.3E+02 0.0094 29.7 12.9 101 49-152 99-212 (430)
224 PRK13125 trpA tryptophan synth 39.2 2.4E+02 0.0051 29.3 10.1 54 96-149 64-125 (244)
225 COG2022 ThiG Uncharacterized e 38.8 2E+02 0.0043 30.7 9.2 115 33-151 100-232 (262)
226 PRK08007 para-aminobenzoate sy 38.8 35 0.00077 33.9 3.8 49 36-86 2-50 (187)
227 cd08179 NADPH_BDH NADPH-depend 38.8 2.3E+02 0.005 31.2 10.5 63 34-101 24-100 (375)
228 PF14097 SpoVAE: Stage V sporu 38.6 3.6E+02 0.0078 27.4 10.6 75 36-110 3-86 (180)
229 cd08187 BDH Butanol dehydrogen 38.6 2E+02 0.0044 31.7 10.0 78 33-115 28-137 (382)
230 PRK07764 DNA polymerase III su 38.4 91 0.002 38.4 7.9 72 79-152 120-194 (824)
231 PF00534 Glycos_transf_1: Glyc 38.3 3.3E+02 0.0071 25.3 10.7 109 33-153 47-159 (172)
232 PRK06015 keto-hydroxyglutarate 38.1 2.2E+02 0.0047 29.3 9.4 60 84-144 32-91 (201)
233 cd03820 GT1_amsD_like This fam 38.0 4.2E+02 0.009 26.3 12.3 108 33-151 209-318 (348)
234 cd04731 HisF The cyclase subun 37.9 1.7E+02 0.0036 30.0 8.7 70 63-134 26-99 (243)
235 PRK01231 ppnK inorganic polyph 37.9 3.4E+02 0.0074 29.3 11.3 105 31-154 2-120 (295)
236 PRK06895 putative anthranilate 37.7 39 0.00085 33.5 3.9 31 34-64 2-32 (190)
237 PRK05581 ribulose-phosphate 3- 37.6 2E+02 0.0043 28.7 9.0 56 80-135 132-198 (220)
238 KOG3648 Golgi apparatus protei 37.5 30 0.00064 41.1 3.4 13 631-643 280-292 (1179)
239 PRK04885 ppnK inorganic polyph 37.5 91 0.002 33.2 6.8 56 80-154 36-95 (265)
240 cd04740 DHOD_1B_like Dihydroor 37.5 5.2E+02 0.011 27.3 13.1 57 95-151 220-282 (296)
241 PRK13566 anthranilate synthase 37.4 74 0.0016 38.6 6.8 79 31-113 524-605 (720)
242 PF02254 TrkA_N: TrkA-N domain 37.2 2.9E+02 0.0063 24.3 9.7 92 34-134 22-115 (116)
243 KOG0922 DEAH-box RNA helicase 36.9 75 0.0016 38.1 6.5 103 2-127 110-216 (674)
244 PRK13125 trpA tryptophan synth 36.8 3.8E+02 0.0083 27.8 11.2 88 46-136 118-215 (244)
245 TIGR01163 rpe ribulose-phospha 36.5 1.3E+02 0.0028 29.6 7.5 67 65-135 115-193 (210)
246 cd03818 GT1_ExpC_like This fam 36.4 3.2E+02 0.0069 29.6 11.0 75 66-151 291-365 (396)
247 TIGR01182 eda Entner-Doudoroff 36.0 2.9E+02 0.0064 28.4 10.0 81 59-143 12-94 (204)
248 PRK02649 ppnK inorganic polyph 35.9 2.3E+02 0.0049 30.9 9.6 101 35-154 3-126 (305)
249 PRK04180 pyridoxal biosynthesi 35.8 96 0.0021 33.7 6.6 60 93-152 190-256 (293)
250 cd00429 RPE Ribulose-5-phospha 35.5 1.3E+02 0.0028 29.5 7.2 55 80-135 128-194 (211)
251 PRK03378 ppnK inorganic polyph 35.2 1.4E+02 0.0031 32.2 7.9 102 34-154 6-121 (292)
252 PRK06106 nicotinate-nucleotide 35.2 2.2E+02 0.0047 30.8 9.2 90 36-132 167-263 (281)
253 PF02581 TMP-TENI: Thiamine mo 34.8 2.3E+02 0.0049 27.8 8.7 69 61-133 100-175 (180)
254 cd05212 NAD_bind_m-THF_DH_Cycl 34.8 1.3E+02 0.0028 29.0 6.8 54 31-91 26-83 (140)
255 COG0742 N6-adenine-specific me 34.7 75 0.0016 32.4 5.4 53 34-87 67-122 (187)
256 PRK03708 ppnK inorganic polyph 34.7 2.6E+02 0.0056 29.9 9.7 102 34-154 1-114 (277)
257 PLN02716 nicotinate-nucleotide 34.6 2.5E+02 0.0054 30.8 9.6 96 36-131 173-286 (308)
258 PRK07455 keto-hydroxyglutarate 34.5 3.4E+02 0.0074 27.1 10.1 86 57-143 14-99 (187)
259 PRK15427 colanic acid biosynth 34.2 6.8E+02 0.015 27.7 13.4 107 34-151 254-369 (406)
260 PRK05637 anthranilate synthase 34.2 69 0.0015 32.6 5.1 49 34-85 2-50 (208)
261 PF03060 NMO: Nitronate monoox 34.1 2.9E+02 0.0063 30.0 10.2 81 51-134 130-218 (330)
262 TIGR01302 IMP_dehydrog inosine 33.8 3.2E+02 0.0069 31.1 10.8 99 32-134 235-355 (450)
263 PF01959 DHQS: 3-dehydroquinat 33.8 3.3E+02 0.0071 30.5 10.5 70 80-150 97-168 (354)
264 PF03808 Glyco_tran_WecB: Glyc 33.5 2.6E+02 0.0057 27.4 8.9 76 32-111 47-131 (172)
265 PRK04128 1-(5-phosphoribosyl)- 33.4 3.8E+02 0.0083 27.7 10.5 69 64-134 30-101 (228)
266 PRK09922 UDP-D-galactose:(gluc 33.0 4.6E+02 0.0099 28.0 11.4 67 80-152 258-324 (359)
267 TIGR01305 GMP_reduct_1 guanosi 33.0 1.9E+02 0.004 32.3 8.4 68 68-135 110-178 (343)
268 PRK04338 N(2),N(2)-dimethylgua 32.8 2.5E+02 0.0055 31.4 9.6 78 34-118 82-162 (382)
269 PF01564 Spermine_synth: Sperm 32.8 51 0.0011 34.4 4.0 60 32-94 99-165 (246)
270 PRK05670 anthranilate synthase 32.7 56 0.0012 32.3 4.1 48 36-85 2-49 (189)
271 PRK11359 cyclic-di-GMP phospho 32.5 3.8E+02 0.0083 31.7 11.7 97 49-148 683-793 (799)
272 cd08185 Fe-ADH1 Iron-containin 32.5 2.1E+02 0.0047 31.5 9.0 63 34-101 26-102 (380)
273 TIGR03704 PrmC_rel_meth putati 32.5 4.2E+02 0.0091 27.6 10.7 51 34-87 111-161 (251)
274 PRK10416 signal recognition pa 32.4 2.2E+02 0.0048 31.0 8.9 55 31-87 140-204 (318)
275 PLN02935 Bifunctional NADH kin 32.1 3.1E+02 0.0067 32.2 10.3 57 79-154 262-320 (508)
276 KOG1562 Spermidine synthase [A 31.9 1.3E+02 0.0029 33.0 6.9 64 35-100 147-216 (337)
277 COG0626 MetC Cystathionine bet 31.9 2.9E+02 0.0062 31.4 9.9 123 5-133 70-205 (396)
278 COG0673 MviM Predicted dehydro 31.9 4.4E+02 0.0095 27.7 11.0 104 33-149 3-114 (342)
279 PF04309 G3P_antiterm: Glycero 31.7 53 0.0012 33.0 3.8 61 66-132 106-166 (175)
280 cd03825 GT1_wcfI_like This fam 31.6 1.4E+02 0.0031 30.8 7.1 75 34-112 1-82 (365)
281 cd03785 GT1_MurG MurG is an N- 31.6 6.2E+02 0.013 26.4 12.8 65 80-151 253-323 (350)
282 PRK07765 para-aminobenzoate sy 31.5 67 0.0015 32.8 4.6 79 34-113 1-83 (214)
283 PRK14722 flhF flagellar biosyn 31.4 3.6E+02 0.0077 30.3 10.5 87 34-121 168-262 (374)
284 cd03804 GT1_wbaZ_like This fam 31.4 3.6E+02 0.0079 28.2 10.2 104 34-151 222-325 (351)
285 PRK06559 nicotinate-nucleotide 31.2 3.8E+02 0.0083 29.1 10.3 90 35-131 169-265 (290)
286 PRK01033 imidazole glycerol ph 31.2 2.3E+02 0.0051 29.6 8.6 68 66-134 154-225 (258)
287 cd03801 GT1_YqgM_like This fam 31.1 5.4E+02 0.012 25.6 12.0 74 67-151 267-340 (374)
288 PRK13789 phosphoribosylamine-- 31.1 3.7E+02 0.0081 30.3 10.7 62 32-95 3-84 (426)
289 cd03819 GT1_WavL_like This fam 30.8 6.1E+02 0.013 26.1 12.8 108 33-150 216-328 (355)
290 cd04731 HisF The cyclase subun 30.4 2.4E+02 0.0052 28.8 8.4 65 68-134 153-222 (243)
291 PRK03659 glutathione-regulated 30.4 2.5E+02 0.0055 33.1 9.6 93 33-134 423-517 (601)
292 PLN02335 anthranilate synthase 30.3 57 0.0012 33.5 3.8 78 33-113 18-98 (222)
293 CHL00101 trpG anthranilate syn 30.3 59 0.0013 32.3 3.9 48 36-85 2-49 (190)
294 TIGR03449 mycothiol_MshA UDP-N 30.1 7.1E+02 0.015 26.7 12.5 107 34-151 253-367 (405)
295 PF03328 HpcH_HpaI: HpcH/HpaI 30.0 3.5E+02 0.0076 27.3 9.5 84 64-149 8-106 (221)
296 cd01573 modD_like ModD; Quinol 29.9 2.9E+02 0.0062 29.5 9.1 70 60-134 187-257 (272)
297 TIGR00696 wecB_tagA_cpsF bacte 29.7 2.9E+02 0.0062 27.7 8.5 99 9-111 21-130 (177)
298 cd06338 PBP1_ABC_ligand_bindin 29.6 5.7E+02 0.012 26.7 11.3 66 45-114 157-230 (345)
299 cd01948 EAL EAL domain. This d 29.6 2.3E+02 0.005 27.8 7.9 88 49-139 137-238 (240)
300 cd00452 KDPG_aldolase KDPG and 29.5 3.5E+02 0.0077 26.8 9.2 70 60-135 101-171 (190)
301 cd04949 GT1_gtfA_like This fam 28.9 4.9E+02 0.011 27.4 10.8 54 93-151 291-344 (372)
302 cd08194 Fe-ADH6 Iron-containin 28.9 3.7E+02 0.0081 29.6 10.1 63 34-101 24-99 (375)
303 PRK09860 putative alcohol dehy 28.8 3.3E+02 0.0072 30.2 9.7 63 34-101 32-107 (383)
304 PRK13143 hisH imidazole glycer 28.8 1.2E+02 0.0027 30.3 5.9 44 34-85 1-44 (200)
305 TIGR02082 metH 5-methyltetrahy 28.7 4.5E+02 0.0097 34.0 11.8 103 33-137 732-847 (1178)
306 PRK04302 triosephosphate isome 28.4 6.5E+02 0.014 25.6 12.9 53 96-148 162-217 (223)
307 PRK04539 ppnK inorganic polyph 28.2 5.5E+02 0.012 27.8 11.0 102 34-154 6-126 (296)
308 PLN02591 tryptophan synthase 28.2 7.4E+02 0.016 26.2 12.4 98 36-136 110-219 (250)
309 PRK00748 1-(5-phosphoribosyl)- 28.1 3.2E+02 0.0069 27.5 8.8 72 64-136 30-104 (233)
310 PRK09490 metH B12-dependent me 28.0 3.6E+02 0.0078 35.0 10.8 102 34-137 752-866 (1229)
311 TIGR00417 speE spermidine synt 27.8 3.6E+02 0.0077 28.3 9.3 55 34-91 97-157 (270)
312 cd04726 KGPDC_HPS 3-Keto-L-gul 27.7 2E+02 0.0042 28.3 7.0 82 65-148 11-98 (202)
313 cd08176 LPO Lactadehyde:propan 27.6 3.8E+02 0.0083 29.5 9.9 63 34-101 29-104 (377)
314 cd08181 PPD-like 1,3-propanedi 27.5 4.3E+02 0.0094 28.9 10.2 63 34-101 26-102 (357)
315 TIGR00095 RNA methyltransferas 27.4 4E+02 0.0086 26.6 9.1 67 35-101 74-143 (189)
316 PRK13111 trpA tryptophan synth 27.4 6.7E+02 0.014 26.6 11.2 98 36-136 121-229 (258)
317 COG0421 SpeE Spermidine syntha 27.3 83 0.0018 33.9 4.5 54 34-90 101-160 (282)
318 PF01285 TEA: TEA/ATTS domain 27.3 72 0.0016 36.4 4.2 52 220-271 47-112 (431)
319 TIGR03061 pip_yhgE_Nterm YhgE/ 27.2 1.4E+02 0.003 28.8 5.7 52 31-85 41-102 (164)
320 PRK00994 F420-dependent methyl 27.2 3.6E+02 0.0078 28.9 8.9 79 57-138 31-118 (277)
321 PRK07114 keto-hydroxyglutarate 27.2 6.6E+02 0.014 26.2 10.9 85 58-144 18-106 (222)
322 TIGR00736 nifR3_rel_arch TIM-b 27.1 2.9E+02 0.0064 28.9 8.4 94 38-134 116-219 (231)
323 PF00977 His_biosynth: Histidi 27.0 2.7E+02 0.0059 28.6 8.1 70 64-134 147-219 (229)
324 TIGR03365 Bsubt_queE 7-cyano-7 26.9 5.3E+02 0.011 26.7 10.3 100 35-139 75-187 (238)
325 TIGR00959 ffh signal recogniti 26.6 5.5E+02 0.012 29.3 11.1 85 32-118 127-226 (428)
326 PF03102 NeuB: NeuB family; I 26.5 2.4E+02 0.0053 29.7 7.7 92 47-143 59-160 (241)
327 PLN02823 spermine synthase 26.5 1.7E+02 0.0037 32.2 6.9 54 34-90 128-187 (336)
328 cd00532 MGS-like MGS-like doma 26.4 1.5E+02 0.0032 27.0 5.4 22 40-61 8-29 (112)
329 PF00290 Trp_syntA: Tryptophan 26.1 1.1E+02 0.0024 32.6 5.2 54 94-147 74-134 (259)
330 TIGR01579 MiaB-like-C MiaB-lik 26.1 4.3E+02 0.0094 29.4 10.1 93 43-149 10-107 (414)
331 TIGR03572 WbuZ glycosyl amidat 26.1 3.7E+02 0.0081 27.2 8.9 72 63-135 29-103 (232)
332 cd08170 GlyDH Glycerol dehydro 26.0 3.3E+02 0.0071 29.6 9.0 76 34-114 23-109 (351)
333 TIGR01859 fruc_bis_ald_ fructo 26.0 2.4E+02 0.0052 30.3 7.7 84 63-153 152-244 (282)
334 PRK07994 DNA polymerase III su 26.0 1.5E+02 0.0033 35.6 6.8 72 79-152 119-193 (647)
335 PRK08072 nicotinate-nucleotide 25.9 4.2E+02 0.0091 28.5 9.5 91 35-133 160-258 (277)
336 PLN02589 caffeoyl-CoA O-methyl 25.9 3.1E+02 0.0067 28.9 8.4 59 30-88 101-165 (247)
337 PRK13585 1-(5-phosphoribosyl)- 25.9 3.4E+02 0.0073 27.6 8.6 78 65-144 150-237 (241)
338 PRK12727 flagellar biosynthesi 25.8 4.9E+02 0.011 30.9 10.6 54 33-87 380-436 (559)
339 PRK14076 pnk inorganic polypho 25.7 2.3E+02 0.005 33.3 8.2 103 34-155 291-407 (569)
340 cd03798 GT1_wlbH_like This fam 25.7 6.2E+02 0.013 25.3 10.3 53 94-152 292-344 (377)
341 PRK14723 flhF flagellar biosyn 25.7 4.8E+02 0.011 32.2 10.9 111 34-147 216-344 (767)
342 COG1643 HrpA HrpA-like helicas 25.7 3.7E+02 0.0079 33.6 10.0 128 2-153 109-254 (845)
343 cd04724 Tryptophan_synthase_al 25.5 4.3E+02 0.0092 27.5 9.3 98 36-136 108-216 (242)
344 COG1091 RfbD dTDP-4-dehydrorha 25.4 3.6E+02 0.0078 29.2 8.8 79 34-115 1-101 (281)
345 PRK05458 guanosine 5'-monophos 25.3 2.3E+02 0.005 31.2 7.5 53 80-133 112-166 (326)
346 PLN00191 enolase 25.3 4.7E+02 0.01 30.2 10.3 108 39-147 239-379 (457)
347 PRK03562 glutathione-regulated 25.2 3.6E+02 0.0077 32.1 9.6 91 33-132 423-515 (621)
348 cd01568 QPRTase_NadC Quinolina 25.2 3.4E+02 0.0073 28.9 8.6 94 35-134 153-254 (269)
349 PRK09522 bifunctional glutamin 25.2 1E+02 0.0022 36.1 5.1 51 34-86 2-55 (531)
350 PRK01033 imidazole glycerol ph 25.0 4E+02 0.0087 27.9 9.1 72 63-135 29-103 (258)
351 TIGR02149 glgA_Coryne glycogen 25.0 8.3E+02 0.018 25.8 12.0 75 66-151 271-351 (388)
352 TIGR00735 hisF imidazoleglycer 24.9 4.6E+02 0.01 27.2 9.5 71 64-135 30-103 (254)
353 cd04951 GT1_WbdM_like This fam 24.9 5.9E+02 0.013 26.1 10.2 104 33-150 219-324 (360)
354 smart00052 EAL Putative diguan 24.9 3.6E+02 0.0078 26.5 8.4 89 48-139 137-239 (241)
355 KOG4175 Tryptophan synthase al 24.9 2.3E+02 0.005 29.7 6.8 40 105-144 94-139 (268)
356 TIGR01306 GMP_reduct_2 guanosi 24.8 2.3E+02 0.005 31.2 7.4 56 80-135 109-165 (321)
357 PRK10867 signal recognition pa 24.5 7.2E+02 0.016 28.5 11.5 102 33-136 129-250 (433)
358 PRK10060 RNase II stability mo 24.5 5.7E+02 0.012 30.4 11.2 98 48-148 545-656 (663)
359 PRK08185 hypothetical protein; 24.5 2.6E+02 0.0057 30.2 7.6 84 63-153 148-242 (283)
360 PF04131 NanE: Putative N-acet 24.4 1.9E+02 0.0041 29.7 6.2 70 57-134 45-117 (192)
361 PF01993 MTD: methylene-5,6,7, 24.4 1.7E+02 0.0037 31.3 6.0 64 72-138 54-117 (276)
362 cd08551 Fe-ADH iron-containing 24.4 4.1E+02 0.0088 29.1 9.3 63 34-101 24-99 (370)
363 PRK05286 dihydroorotate dehydr 24.4 5.8E+02 0.013 27.9 10.5 56 96-151 277-341 (344)
364 cd08182 HEPD Hydroxyethylphosp 24.2 3.7E+02 0.0081 29.4 9.0 63 34-101 24-96 (367)
365 PRK11923 algU RNA polymerase s 24.2 1.5E+02 0.0033 28.7 5.5 39 227-268 126-164 (193)
366 TIGR01361 DAHP_synth_Bsub phos 24.0 2.6E+02 0.0057 29.6 7.5 74 65-139 147-234 (260)
367 PRK04128 1-(5-phosphoribosyl)- 24.0 3.3E+02 0.0072 28.1 8.1 65 65-134 144-210 (228)
368 COG3836 HpcH 2,4-dihydroxyhept 23.9 6.2E+02 0.014 27.1 9.9 97 48-147 7-109 (255)
369 cd01572 QPRTase Quinolinate ph 23.8 5.3E+02 0.011 27.5 9.7 90 36-134 155-253 (268)
370 PRK12723 flagellar biosynthesi 23.8 8E+02 0.017 27.7 11.5 92 32-125 205-306 (388)
371 PRK14967 putative methyltransf 23.7 7.1E+02 0.015 25.0 10.3 48 35-87 61-109 (223)
372 PRK13695 putative NTPase; Prov 23.7 4.6E+02 0.01 25.1 8.6 71 79-150 96-172 (174)
373 cd05844 GT1_like_7 Glycosyltra 23.6 8.4E+02 0.018 25.3 12.7 52 94-151 284-335 (367)
374 PRK13609 diacylglycerol glucos 23.6 9.3E+02 0.02 25.8 12.8 105 33-151 230-337 (380)
375 PRK04457 spermidine synthase; 23.6 8.1E+02 0.018 25.7 11.0 52 33-87 90-144 (262)
376 cd08171 GlyDH-like2 Glycerol d 23.5 2.6E+02 0.0056 30.5 7.5 76 34-114 23-110 (345)
377 PRK15201 fimbriae regulatory p 23.4 83 0.0018 32.2 3.4 154 34-205 2-165 (198)
378 PLN02274 inosine-5'-monophosph 23.3 3.1E+02 0.0067 31.9 8.5 67 65-134 248-316 (505)
379 TIGR01306 GMP_reduct_2 guanosi 23.2 1E+03 0.022 26.2 12.5 97 35-134 110-226 (321)
380 cd08186 Fe-ADH8 Iron-containin 23.2 4.5E+02 0.0096 29.1 9.4 63 34-101 27-103 (383)
381 cd00561 CobA_CobO_BtuR ATP:cor 23.2 2E+02 0.0043 28.4 6.0 46 78-123 94-144 (159)
382 PRK05567 inosine 5'-monophosph 23.2 2.7E+02 0.0059 32.0 8.0 64 67-133 230-295 (486)
383 PRK00811 spermidine synthase; 23.1 5.8E+02 0.013 27.1 9.9 57 32-91 99-162 (283)
384 PLN02727 NAD kinase 22.9 3E+02 0.0066 34.6 8.5 101 34-153 679-800 (986)
385 PRK00077 eno enolase; Provisio 22.8 6E+02 0.013 28.8 10.5 106 40-148 213-348 (425)
386 PRK10415 tRNA-dihydrouridine s 22.8 6.5E+02 0.014 27.3 10.4 95 37-133 113-222 (321)
387 PRK06806 fructose-bisphosphate 22.7 3.7E+02 0.008 28.9 8.4 71 62-134 151-229 (281)
388 COG4262 Predicted spermidine s 22.6 2.9E+02 0.0063 31.5 7.6 63 29-93 309-379 (508)
389 PRK08649 inosine 5-monophospha 22.6 1.1E+03 0.024 26.4 12.6 66 65-134 142-214 (368)
390 cd06304 PBP1_BmpA_like Peripla 22.6 5.2E+02 0.011 26.0 9.1 65 46-115 20-89 (260)
391 cd02810 DHOD_DHPD_FMN Dihydroo 22.5 8.6E+02 0.019 25.4 11.0 69 64-132 108-193 (289)
392 cd06284 PBP1_LacI_like_6 Ligan 22.5 5.4E+02 0.012 25.3 9.1 63 44-113 16-84 (267)
393 COG0159 TrpA Tryptophan syntha 22.4 2.8E+02 0.006 29.9 7.2 53 94-146 81-140 (265)
394 PF00497 SBP_bac_3: Bacterial 22.4 2.6E+02 0.0057 26.5 6.7 52 32-87 109-160 (225)
395 cd00405 PRAI Phosphoribosylant 22.3 4.7E+02 0.01 26.0 8.6 51 79-132 120-178 (203)
396 TIGR00078 nadC nicotinate-nucl 22.2 5.2E+02 0.011 27.5 9.3 91 35-134 150-249 (265)
397 PRK14956 DNA polymerase III su 22.2 2E+02 0.0044 33.4 6.7 74 79-152 121-195 (484)
398 TIGR01425 SRP54_euk signal rec 22.2 4.9E+02 0.011 29.9 9.6 99 33-135 128-248 (429)
399 PRK01185 ppnK inorganic polyph 22.2 6.5E+02 0.014 26.9 10.1 101 34-154 1-107 (271)
400 COG2109 BtuR ATP:corrinoid ade 22.1 2.7E+02 0.0058 28.8 6.7 45 79-123 122-171 (198)
401 TIGR00737 nifR3_yhdG putative 22.1 8E+02 0.017 26.3 10.9 93 39-133 113-220 (319)
402 PRK15490 Vi polysaccharide bio 22.1 1.4E+03 0.031 27.4 13.4 102 34-147 430-533 (578)
403 PRK00941 acetyl-CoA decarbonyl 22.0 9.1E+02 0.02 30.0 12.1 117 31-153 235-384 (781)
404 cd02810 DHOD_DHPD_FMN Dihydroo 21.9 6.6E+02 0.014 26.3 10.0 38 95-132 230-269 (289)
405 cd06354 PBP1_BmpA_PnrA_like Pe 21.8 4.8E+02 0.01 26.5 8.8 65 45-114 20-89 (265)
406 PF07652 Flavi_DEAD: Flaviviru 21.5 3.4E+02 0.0074 26.8 7.1 85 31-116 31-136 (148)
407 cd03808 GT1_cap1E_like This fa 21.4 8E+02 0.017 24.4 10.2 52 94-151 277-328 (359)
408 cd02940 DHPD_FMN Dihydropyrimi 21.2 5.6E+02 0.012 27.3 9.4 38 95-132 239-278 (299)
409 COG3010 NanE Putative N-acetyl 21.2 8.7E+02 0.019 25.6 10.2 113 32-148 97-224 (229)
410 PRK15454 ethanol dehydrogenase 21.1 4E+02 0.0087 29.8 8.6 63 34-101 50-125 (395)
411 cd02809 alpha_hydroxyacid_oxid 21.1 8.3E+02 0.018 26.0 10.7 69 63-134 180-255 (299)
412 cd06296 PBP1_CatR_like Ligand- 21.1 4.9E+02 0.011 25.8 8.5 65 44-114 16-86 (270)
413 PLN02366 spermidine synthase 21.0 6.7E+02 0.014 27.3 10.0 59 31-91 113-177 (308)
414 cd02801 DUS_like_FMN Dihydrour 21.0 8.4E+02 0.018 24.3 10.9 91 40-132 106-210 (231)
415 cd02803 OYE_like_FMN_family Ol 20.9 6.6E+02 0.014 26.7 10.0 41 93-133 268-308 (327)
416 cd03802 GT1_AviGT4_like This f 20.9 8.4E+02 0.018 24.8 10.4 74 65-150 233-306 (335)
417 PLN02316 synthase/transferase 20.9 1.1E+03 0.023 30.4 12.8 113 33-151 869-997 (1036)
418 PRK00771 signal recognition pa 20.8 9.9E+02 0.021 27.4 11.7 84 33-119 123-220 (437)
419 cd08178 AAD_C C-terminal alcoh 20.8 4.7E+02 0.01 29.1 9.1 63 34-101 22-97 (398)
420 cd01147 HemV-2 Metal binding p 20.7 2.5E+02 0.0055 28.3 6.4 33 80-115 75-107 (262)
421 PRK01581 speE spermidine synth 20.7 5.8E+02 0.013 28.8 9.5 57 31-90 172-237 (374)
422 PRK14329 (dimethylallyl)adenos 20.6 5.4E+02 0.012 29.4 9.7 103 34-150 24-139 (467)
423 TIGR01302 IMP_dehydrog inosine 20.5 3.4E+02 0.0073 31.0 7.9 53 79-132 236-290 (450)
424 cd06282 PBP1_GntR_like_2 Ligan 20.5 6.9E+02 0.015 24.6 9.4 91 45-151 17-113 (266)
425 cd03115 SRP The signal recogni 20.5 5.6E+02 0.012 24.4 8.5 53 33-87 28-90 (173)
426 COG0461 PyrE Orotate phosphori 20.5 2.4E+02 0.0052 29.1 6.1 64 30-117 109-174 (201)
427 PLN02898 HMP-P kinase/thiamin- 20.4 5.1E+02 0.011 29.8 9.4 65 62-130 396-467 (502)
428 PRK03612 spermidine synthase; 20.3 5.4E+02 0.012 29.9 9.7 58 31-91 319-385 (521)
429 cd03795 GT1_like_4 This family 20.2 9.4E+02 0.02 24.6 13.3 109 33-151 218-331 (357)
430 cd05014 SIS_Kpsf KpsF-like pro 20.2 3.7E+02 0.0081 24.1 6.8 87 43-137 12-100 (128)
431 cd04733 OYE_like_2_FMN Old yel 20.1 3.4E+02 0.0073 29.5 7.6 40 95-134 281-320 (338)
432 PRK11572 copper homeostasis pr 20.0 5.6E+02 0.012 27.3 8.9 91 41-133 98-196 (248)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.84 E-value=2.3e-20 Score=189.73 Aligned_cols=118 Identities=31% Similarity=0.509 Sum_probs=111.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIM 111 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~--~~~IPVII 111 (663)
++|||||||+..++.|...|+..||.|..+.++.+|++.+... ||+||+|++||++||++++++||. ....||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ---PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC---CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5899999999999999999999999999999999999999753 999999999999999999999984 46789999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+|+.++......++++||+|||.|||+++||.+.++.++|+..
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 9999999999999999999999999999999999999998764
No 2
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-20 Score=206.96 Aligned_cols=119 Identities=28% Similarity=0.473 Sum_probs=110.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC--LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~--gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IP 108 (663)
+++||||||++.+|++|+.++.+. ++. |.+|.||.+|++.+++.. |||||+||.||+|||+++++.+++ .+++.
T Consensus 1 MykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~--pDiviTDI~MP~mdGLdLI~~ike~~p~~~ 78 (475)
T COG4753 1 MYKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQ--PDIVITDINMPGMDGLDLIKAIKEQSPDTE 78 (475)
T ss_pred CeeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCce
Confidence 579999999999999999999875 564 569999999999999876 999999999999999999999974 68999
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+||+|++++++++.+|+++|+.|||+||++.++|..++.++..+.
T Consensus 79 ~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl 123 (475)
T COG4753 79 FIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKL 123 (475)
T ss_pred EEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998754
No 3
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.83 E-value=5.4e-20 Score=180.64 Aligned_cols=170 Identities=24% Similarity=0.317 Sum_probs=141.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcE
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPV 109 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir-~~~~IPV 109 (663)
+...-|.|||||...|+.+..+|+..||.|..+.++.+.|...... .|-++|+|+.||+|+|+++..++. ....+||
T Consensus 2 ~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~--~pGclllDvrMPg~sGlelq~~L~~~~~~~PV 79 (202)
T COG4566 2 PREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLD--RPGCLLLDVRMPGMSGLELQDRLAERGIRLPV 79 (202)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccCC--CCCeEEEecCCCCCchHHHHHHHHhcCCCCCE
Confidence 3445689999999999999999999999999999999999985443 489999999999999999999996 4578999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHhhhccCC
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGT 189 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~s~sl~~~~~~klt~~Eie~lssv~eGs 189 (663)
|++|++.|.....+|++.||.|||.||++...|..+++++++............ .........++.+|.+++..+-.|.
T Consensus 80 IfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~-~~~~~~l~tLT~RERqVl~~vV~G~ 158 (202)
T COG4566 80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQ-AAIRARLATLTPRERQVLDLVVRGL 158 (202)
T ss_pred EEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHhcCHHHHHHHHHHHcCc
Confidence 999999999999999999999999999999999999999987643222211100 0011223568999999999999999
Q ss_pred cchhhhhhhccccc
Q 006044 190 EGTFKAQRKRISAK 203 (663)
Q Consensus 190 e~~lka~~k~Is~K 203 (663)
-++.++....|+.+
T Consensus 159 ~NKqIA~dLgiS~r 172 (202)
T COG4566 159 MNKQIAFDLGISER 172 (202)
T ss_pred ccHHHHHHcCCchh
Confidence 88888888777744
No 4
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.82 E-value=1.4e-19 Score=181.55 Aligned_cols=170 Identities=30% Similarity=0.344 Sum_probs=142.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~g-y~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir-~~~~IPVI 110 (663)
++|+|+||++.+|..|+.+|.... ++ |..+.++.++++.++... ||+||+|+.||+++|+++++.|+ ..++++||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~--pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELK--PDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhcC--CCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 579999999999999999998764 66 458888999999987765 99999999999999999999997 56889999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccc-----c-CCcccccc-cCCCchhHHHHh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-----S-GSLEETDH-HKRGSDEIEYAS 183 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~-----s-~sl~~~~~-~klt~~Eie~ls 183 (663)
++|.+++..++.++++.||.+|+.|..+.++|..+++.++.+..+....... . ........ ..++.+|.+++.
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~RE~eVL~ 158 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLPPDIARKLAGLLPSSSAEAPLAELLTPRELEVLR 158 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeCHHHHHHHHhhcccccccccccCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998765433221110 0 00011111 368999999999
Q ss_pred hhccCCcchhhhhhhccccccc
Q 006044 184 SVNEGTEGTFKAQRKRISAKEE 205 (663)
Q Consensus 184 sv~eGse~~lka~~k~Is~Kee 205 (663)
.+.+|..++.++.+..++.+|.
T Consensus 159 lla~G~snkeIA~~L~iS~~TV 180 (211)
T COG2197 159 LLAEGLSNKEIAEELNLSEKTV 180 (211)
T ss_pred HHHCCCCHHHHHHHHCCCHhHH
Confidence 9999999999999999987754
No 5
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=1.9e-18 Score=172.51 Aligned_cols=119 Identities=29% Similarity=0.468 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~-gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
++|||||||+.+.+.-+.+++.. +|. |.+|.+.++|..++++.+ |||||+|+.||+.+|++++..|+. ...+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~--pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK--PDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhhC--CCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 58999999999999999999976 665 569999999999999877 899999999999999999999984 4578899
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
++||-.+.+.+.+|++.|+.|||+|||..+.|.+++.+..+++.
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~ 122 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRH 122 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877653
No 6
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.78 E-value=3.2e-18 Score=188.74 Aligned_cols=119 Identities=41% Similarity=0.630 Sum_probs=112.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir-~~~~IPVII 111 (663)
..+|||||||+.+|..+..+|...||.|.++.++.+|++.+.... ||+||+|+.||+|||++++++|+ ..+++|||+
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~--~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~ 81 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESP--FDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIV 81 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCCEEE
Confidence 347999999999999999999999999999999999999998763 99999999999999999999997 458999999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
||++.+.+.+.+|++.||+|||.|||+.++|..++++++...
T Consensus 82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998754
No 7
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.77 E-value=8.1e-19 Score=184.31 Aligned_cols=66 Identities=55% Similarity=0.823 Sum_probs=62.6
Q ss_pred CCCCCcccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhCcc
Q 006044 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLNGVS 282 (663)
Q Consensus 217 ~~KKpRVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASHLQKyRl~LKrls~~a 282 (663)
..||+|++||.|||++|++||++||.+||+||+||++|+|+||||+||+|||||||+++|++....
T Consensus 232 g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rE 297 (526)
T PLN03162 232 GKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAARE 297 (526)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchh
Confidence 579999999999999999999999999999999999999999999999999999999999885433
No 8
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.76 E-value=2.1e-17 Score=144.44 Aligned_cols=110 Identities=37% Similarity=0.639 Sum_probs=104.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006044 36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy-~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILS 113 (663)
||||||++..++.++.+|+..+| .|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|+|++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~--~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHP--PDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHST--ESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccC--ceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999998899 9999999999999998876 999999999999999999999974 4689999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHH
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq 147 (663)
...+.....++++.|+++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999998874
No 9
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.75 E-value=8.3e-18 Score=178.53 Aligned_cols=232 Identities=26% Similarity=0.399 Sum_probs=169.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-c---CC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E---MD 106 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~---~~ 106 (663)
...++||+|||++..+..++.+|+..+|.|.+|.+|++|+++..... +|+||+|++||+|||++++.+|+. . ..
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~--~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ 89 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEP--PDLVLLDVRMPEMDGAEVLNKLKAMSPSTRR 89 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhcccC--CceEEeeccCCCccHHHHHHHHHhcCCcccc
Confidence 45689999999999999999999999999999999999999998766 999999999999999999999975 3 46
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHhhhc
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVN 186 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~s~sl~~~~~~klt~~Eie~lssv~ 186 (663)
+|||++|++.+.+...+|+..||++||.||+++.+|...+...+..+....... +...|++
T Consensus 90 ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k~~~~~~~----------------~~~~~le--- 150 (360)
T COG3437 90 IPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLKRNEDFLL----------------DQNLYLE--- 150 (360)
T ss_pred cceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHH---
Confidence 999999999999999999999999999999999999988875554332221111 0111111
Q ss_pred cCCcchhhhhhhcccccccccccccCCCCCCCCCCcccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHH
Q 006044 187 EGTEGTFKAQRKRISAKEEDDGELESDDPSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVAS 266 (663)
Q Consensus 187 eGse~~lka~~k~Is~KeedD~e~e~~d~S~~KKpRVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVAS 266 (663)
..+-. .++.+ ..+....|-+.+..|. ..+ ..+..++..
T Consensus 151 -----~~e~~-----~~~~e-------------------~~~~~~~~~~t~~~L~-------~~~------E~R~~etg~ 188 (360)
T COG3437 151 -----LQELR-----RRTEE-------------------LAQIEDNLDETLEELA-------ALL------EVRDYETGD 188 (360)
T ss_pred -----HHHHH-----HHHHH-------------------HHHHHHHHHHHHHHHH-------HHH------Hhcccchhh
Confidence 00000 00000 0111122223333331 222 347788999
Q ss_pred HHHHHHHHHHHhhCccccCCcccccCCCcccccccCCCCccc--chhccccCCCChhHHHHHHH
Q 006044 267 HLQKFRLYLKRLNGVSQQGGITNSFCAPIETNVKLGSLGRFD--IQALAASGQIPPQTLAALHA 328 (663)
Q Consensus 267 HLQKyRl~LKrls~~a~q~gis~~~~~~~~~~~~l~~~~~~~--~~~~~~~~q~~~~~~~~~~~ 328 (663)
|+.+...|.+.+ +...|++..+...+..+++|-.+|... =..+-..|.+.++-+...+.
T Consensus 189 H~~Rv~~~~~~l---Ae~lgLse~~v~~i~~AapLHDIGKvaiPD~ILlKpg~Lt~ee~~imk~ 249 (360)
T COG3437 189 HLERVAQYSELL---AELLGLSEEEVDLIKKAAPLHDIGKVAIPDSILLKPGKLTSEEFEIMKG 249 (360)
T ss_pred HHHHHHHHHHHH---HHHhCCCHHHHHHHHhccchhhcccccCChHHhcCCCCCCHHHHHHHhc
Confidence 999999999998 888888888777766666776677663 25566777887776666543
No 10
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.74 E-value=8.7e-17 Score=160.35 Aligned_cols=122 Identities=25% Similarity=0.380 Sum_probs=110.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCC
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~-gy-~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~ 106 (663)
+|..++||||||++.+++.++.+|... ++ .|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .++
T Consensus 1 ~~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~--pdlvllD~~mp~~~gle~~~~l~~~~~~ 78 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFK--PGLILLDNYLPDGRGINLLHELVQAHYP 78 (225)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhcCCC
Confidence 467799999999999999999999864 67 4679999999999998765 999999999999999999999975 467
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
.+||++|++.+.+.+.++++.||++||.||++.++|..+++++..++
T Consensus 79 ~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 125 (225)
T PRK10046 79 GDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRK 125 (225)
T ss_pred CCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999886644
No 11
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.74 E-value=1.1e-16 Score=157.68 Aligned_cols=170 Identities=17% Similarity=0.175 Sum_probs=138.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-e-EEEECCHHHHHHHHHHcCCCceEEEEecCCCC---CCHHHHHHHHhc-cCC
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLY-N-VTTCSQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGL-EMD 106 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy-~-V~tasng~eALelLre~k~~pDLVILDI~MPd---mDG~ELL~~Ir~-~~~ 106 (663)
+++||||||++..+..++.+|...++ . +..+.++.++++.+.... ||+||+|+.||+ ++|++++++|+. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLD--AHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCC--CCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 47999999999999999999987654 3 678999999999987654 999999999999 599999999974 578
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccc---cCCcccccccCCCchhHHHHh
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN---SGSLEETDHHKRGSDEIEYAS 183 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~---s~sl~~~~~~klt~~Eie~ls 183 (663)
+|||++|.+.+.....++++.||++||.||.+.++|..+++.++.+.......... ...........++.+|.+++.
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~evl~ 160 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR 160 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCeecCHHHHHHHHHhccCCCccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999988754332211100 000000112358999999999
Q ss_pred hhccCCcchhhhhhhcccccc
Q 006044 184 SVNEGTEGTFKAQRKRISAKE 204 (663)
Q Consensus 184 sv~eGse~~lka~~k~Is~Ke 204 (663)
.+.+|..+..++.+..++.++
T Consensus 161 ~~~~G~s~~eIA~~l~iS~~T 181 (216)
T PRK10840 161 LFAEGFLVTEIAKKLNRSIKT 181 (216)
T ss_pred HHHCCCCHHHHHHHHCCCHHH
Confidence 999999999999988887653
No 12
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.72 E-value=7.5e-17 Score=189.67 Aligned_cols=151 Identities=25% Similarity=0.323 Sum_probs=133.9
Q ss_pred ChhHHHHHHHcCCC-------CCCccccccccCCCC------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 006044 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQ------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (663)
Q Consensus 1 lai~~~~v~~mGGs-------g~gs~~~~dl~~~d~------------fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~ 61 (663)
|+|++++++.|||. |.|++|.+.+++... ...+++||||||++..+..++.+|...+|.|.
T Consensus 630 L~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~ 709 (914)
T PRK11466 630 LTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITAEMLNTSGAQVV 709 (914)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEccccccccccccccccccCCcceEEEeCCHHHHHHHHHHHHhcCCceE
Confidence 58999999999994 778999888876311 11357999999999999999999999999999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHH
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREE 140 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~e 140 (663)
.+.++.+|++.+... ..||+||+|++||+|||+++++.|+. .+.+|||++|++...+...+++..|+++||.||++.+
T Consensus 710 ~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~ 788 (914)
T PRK11466 710 AVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPRE 788 (914)
T ss_pred EeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHH
Confidence 999999999988643 24899999999999999999999974 4789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 006044 141 ELKNIWQHVVRK 152 (663)
Q Consensus 141 eLk~~Iq~VLrk 152 (663)
+|..++.++++.
T Consensus 789 ~L~~~i~~~~~~ 800 (914)
T PRK11466 789 VLGQLLAHYLQL 800 (914)
T ss_pred HHHHHHHHHhhh
Confidence 999999998764
No 13
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.72 E-value=1.1e-16 Score=187.67 Aligned_cols=117 Identities=28% Similarity=0.420 Sum_probs=109.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-----CCC
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDL 107 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-----~~I 107 (663)
+++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+|||++++++|+.. +.+
T Consensus 690 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~~~ 767 (921)
T PRK15347 690 QLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQHR--FDLVLMDIRMPGLDGLETTQLWRDDPNNLDPDC 767 (921)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhhcCCCC
Confidence 468999999999999999999999999999999999999998755 9999999999999999999999742 578
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|||++|++.+.+...++++.|+++||.||++.++|..++.++++
T Consensus 768 pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 768 MIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred cEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999987764
No 14
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.71 E-value=1e-16 Score=186.23 Aligned_cols=149 Identities=23% Similarity=0.364 Sum_probs=129.2
Q ss_pred ChhHHHHHHHcCCC-------CCCccccccccCCCC-------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCeE
Q 006044 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQ-------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNV 60 (663)
Q Consensus 1 lai~~~~v~~mGGs-------g~gs~~~~dl~~~d~-------------fP~giRVLIVDDD~~~re~L~~lL~~~gy~V 60 (663)
|+|++++|++|||. |.|++|.+.++++.. -..+++||||||++..+..++.+|+..+|.|
T Consensus 473 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~ILivdD~~~~~~~l~~~L~~~g~~v 552 (779)
T PRK11091 473 LAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPAVAEEVEDAFDEDDMPLPALNILLVEDIELNVIVARSVLEKLGNSV 552 (779)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccccccccccccccccccccccceEEEcCCHHHHHHHHHHHHHcCCEE
Confidence 58999999999994 889999988877421 1125899999999999999999999999999
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CC-CcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD-LPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 61 ~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~-IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
..+.++.+|++.+.... ||+||+|+.||+|||+++++.|+.. .. .|||++|++... ...++++.|+++||.||
T Consensus 553 ~~a~~~~eal~~~~~~~--~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP 629 (779)
T PRK11091 553 DVAMTGKEALEMFDPDE--YDLVLLDIQLPDMTGLDIARELRERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKP 629 (779)
T ss_pred EEECCHHHHHHHhhcCC--CCEEEEcCCCCCCCHHHHHHHHHhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECC
Confidence 99999999999998654 9999999999999999999999854 34 488889987654 46789999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 006044 137 IREEELKNIWQHVVRK 152 (663)
Q Consensus 137 ~s~eeLk~~Iq~VLrk 152 (663)
++.++|..++++++..
T Consensus 630 ~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 630 LSVPALTAMIKKFWDT 645 (779)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999988754
No 15
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.71 E-value=1.2e-16 Score=188.55 Aligned_cols=150 Identities=27% Similarity=0.350 Sum_probs=133.2
Q ss_pred ChhHHHHHHHcCCC-------CCCccccccccCCCC------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE
Q 006044 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQ------------FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT 61 (663)
Q Consensus 1 lai~~~~v~~mGGs-------g~gs~~~~dl~~~d~------------fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~ 61 (663)
|+|++++++.|||. |.|++|.+.+++... ...+.+||||||++..+..++.+|...+|.|.
T Consensus 651 L~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~~~~~~~~~~~~~~~~~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~ 730 (968)
T TIGR02956 651 LAISQRLVEAMDGELGVESELGVGSCFWFTLPLTRGKPAEDSATLTVIDLPPQRVLLVEDNEVNQMVAQGFLTRLGHKVT 730 (968)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCCCCccccccccccccccccceEEEcCcHHHHHHHHHHHHHcCCEEE
Confidence 58999999999994 788999888876421 11245899999999999999999999999999
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CC---CcEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MD---LPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~---IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~ 137 (663)
.+.++.+|++.+.... ||+||+|++||+|||+++++.|+.. +. +|||++|++...+...++++.|+++||.||+
T Consensus 731 ~~~~~~~a~~~l~~~~--~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~ 808 (968)
T TIGR02956 731 LAESGQSALECFHQHA--FDLALLDINLPDGDGVTLLQQLRAIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPV 808 (968)
T ss_pred EECCHHHHHHHHHCCC--CCEEEECCCCCCCCHHHHHHHHHhCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 9999999999998754 9999999999999999999999853 22 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006044 138 REEELKNIWQHVVRK 152 (663)
Q Consensus 138 s~eeLk~~Iq~VLrk 152 (663)
+.++|..++.+++..
T Consensus 809 ~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 809 VEEQLTAMIAVILAG 823 (968)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999887753
No 16
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.70 E-value=4e-16 Score=186.06 Aligned_cols=119 Identities=30% Similarity=0.482 Sum_probs=110.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
+++||||||++..+..++.+|+..+|.|..+.++.+|++.+.... ||+||+|++||+|||+++++.|++ .+.+|||+
T Consensus 801 ~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~~--~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII~ 878 (924)
T PRK10841 801 DMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVIG 878 (924)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999999999998765 999999999999999999999985 46799999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+|+....+...++++.|+++||.||++.++|..++.++.+..
T Consensus 879 lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 879 VTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998876543
No 17
>PRK09483 response regulator; Provisional
Probab=99.69 E-value=7.3e-16 Score=148.91 Aligned_cols=169 Identities=20% Similarity=0.231 Sum_probs=137.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPV 109 (663)
+++||||||++..+..++.+|... ++.+. .+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~i 78 (217)
T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNA--VDVVLMDMNMPGIGGLEATRKILRYTPDVKI 78 (217)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCeE
Confidence 479999999999999999999874 77765 7999999999988754 999999999999999999999964 578999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc------ccCCcccccccCCCchhHHHHh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE------NSGSLEETDHHKRGSDEIEYAS 183 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e------~s~sl~~~~~~klt~~Eie~ls 183 (663)
|++|...+.....+++..|+++|+.||++.++|..++++++++......... ............++.+|.+++.
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vl~ 158 (217)
T PRK09483 79 IMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRYIASDIAQQMALSQIEPATENPFASLSERELQIML 158 (217)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHhhcccCCCccccccCHHHHHHHH
Confidence 9999999999999999999999999999999999999998876433221110 0001111223458999999999
Q ss_pred hhccCCcchhhhhhhccccc
Q 006044 184 SVNEGTEGTFKAQRKRISAK 203 (663)
Q Consensus 184 sv~eGse~~lka~~k~Is~K 203 (663)
.+.+|.....++.+..++.+
T Consensus 159 ~~~~G~~~~~Ia~~l~is~~ 178 (217)
T PRK09483 159 MITKGQKVNEISEQLNLSPK 178 (217)
T ss_pred HHHCCCCHHHHHHHhCCCHH
Confidence 99999888777777666544
No 18
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.69 E-value=1.1e-15 Score=136.70 Aligned_cols=120 Identities=38% Similarity=0.574 Sum_probs=105.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCc
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~-eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IP 108 (663)
....+||||||++..+..++.+|...++.|..+.++. +|++.++... .||+|++|+.||++||++++++++.. ..+|
T Consensus 3 ~~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~p 81 (130)
T COG0784 3 LSGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIP 81 (130)
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCC
Confidence 3467999999999999999999999999999999995 9999998752 39999999999999999999999865 6788
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHH-HHHHHHHHHH
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVR 151 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~ee-Lk~~Iq~VLr 151 (663)
+|++|++.......++++.|+++|+.||+...+ |...+++.+.
T Consensus 82 vv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 125 (130)
T COG0784 82 VILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLA 125 (130)
T ss_pred EEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHH
Confidence 999999999887788899999999999977666 7777775543
No 19
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.69 E-value=3.9e-16 Score=189.08 Aligned_cols=149 Identities=24% Similarity=0.450 Sum_probs=133.2
Q ss_pred ChhHHHHHHHcCCC-------CCCccccccccCCC---------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCC
Q 006044 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPD---------------QFPAGLRVLVVDDDITCLRILEQMLRRCLY 58 (663)
Q Consensus 1 lai~~~~v~~mGGs-------g~gs~~~~dl~~~d---------------~fP~giRVLIVDDD~~~re~L~~lL~~~gy 58 (663)
|+|+++++++|||. |.|++|.+.++... ..+.+++||||||++..+..++.+|+..+|
T Consensus 904 L~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~g~ 983 (1197)
T PRK09959 904 LMICKELIKNMQGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRLLLKRQLNLLGY 983 (1197)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEccccchhcccccccccccccccCceEEEcCCCHHHHHHHHHHHHHcCC
Confidence 58999999999994 77888888777631 123467999999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 006044 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (663)
Q Consensus 59 ~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~ 137 (663)
.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||++|+..+.+...++++.|+++||.||+
T Consensus 984 ~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~i~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~ 1061 (1197)
T PRK09959 984 DVDEATDGVQALHKVSMQH--YDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTANAQANEREKGLSCGMNLCLFKPL 1061 (1197)
T ss_pred EEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCC
Confidence 9999999999999997654 999999999999999999999974 4679999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006044 138 REEELKNIWQHVVR 151 (663)
Q Consensus 138 s~eeLk~~Iq~VLr 151 (663)
+.++|..+++++.+
T Consensus 1062 ~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1062 TLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999887654
No 20
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.68 E-value=5.1e-16 Score=181.88 Aligned_cols=118 Identities=31% Similarity=0.505 Sum_probs=109.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~IPV 109 (663)
.++||||||++..+..++.+|...++.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|+. .+++||
T Consensus 667 ~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~~--~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~pi 744 (919)
T PRK11107 667 PLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQRP--FDLILMDIQMPGMDGIRACELIRQLPHNQNTPI 744 (919)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHhcccCCCCCE
Confidence 468999999999999999999999999999999999999998765 999999999999999999999985 357999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
|++|++.+.+...++++.|+++||.||++.++|..++.+++..
T Consensus 745 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 745 IAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999887654
No 21
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.67 E-value=7.4e-16 Score=146.58 Aligned_cols=162 Identities=21% Similarity=0.244 Sum_probs=127.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~-gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
+++||||||++..+..++.+|... ++. +..+.++.++++.+.... ||+||+|+.||+++|+++++.++ +.+|||
T Consensus 1 m~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi 76 (196)
T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRG--VQVCICDISMPDISGLELLSQLP--KGMATI 76 (196)
T ss_pred CeEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHc--cCCCEE
Confidence 368999999999999999999754 554 568999999999987654 99999999999999999999986 368999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHhhhccCCc
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTE 190 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~s~sl~~~~~~klt~~Eie~lssv~eGse 190 (663)
++|...+.+....+++.||++|+.||++.++|..+++.++++.......... .........++.+|.+++..+.+|..
T Consensus 77 ~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~Lt~~E~~il~~l~~g~~ 154 (196)
T PRK10360 77 MLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAI--KLASGRQDPLTKRERQVAEKLAQGMA 154 (196)
T ss_pred EEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHH--HHHhccccCCCHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999988754221111100 00011123578889999988888866
Q ss_pred chhhhhhhcc
Q 006044 191 GTFKAQRKRI 200 (663)
Q Consensus 191 ~~lka~~k~I 200 (663)
...++....+
T Consensus 155 ~~~Ia~~l~~ 164 (196)
T PRK10360 155 VKEIAAELGL 164 (196)
T ss_pred HHHHHHHhCC
Confidence 5555554433
No 22
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.67 E-value=5.8e-15 Score=148.34 Aligned_cols=119 Identities=23% Similarity=0.355 Sum_probs=104.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~-gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPV 109 (663)
+++||||||++.+++.++.+|... ++. +..+.++.++++.+......||+||+|+.||+++|+++++.|+. .+.+||
T Consensus 1 m~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~v 80 (239)
T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDV 80 (239)
T ss_pred CeeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCE
Confidence 478999999999999999999864 565 45889999999988642234999999999999999999999974 468999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|++|+..+...+.+++..|+++||.||++.++|..++.++..
T Consensus 81 I~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~ 122 (239)
T PRK10430 81 IVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987543
No 23
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.66 E-value=2.7e-15 Score=146.08 Aligned_cols=118 Identities=28% Similarity=0.383 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
++||||||++..++.+...|...+|.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 58999999999999999999999999999999999999886654 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+..+.+...++++.||++||.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999887653
No 24
>PLN03029 type-a response regulator protein; Provisional
Probab=99.66 E-value=2e-15 Score=152.05 Aligned_cols=122 Identities=28% Similarity=0.560 Sum_probs=109.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcC------------------CCceEEEEecCCCCCC
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERK------------------GCFDVVLSDVHMPDMD 93 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k------------------~~pDLVILDI~MPdmD 93 (663)
..++||||||++..+..+..+|...+|.|.++.++.+|++.+.... ..+||||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 4579999999999999999999999999999999999999986542 1367999999999999
Q ss_pred HHHHHHHHhcc---CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 94 GFKLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 94 G~ELL~~Ir~~---~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|+++++.|+.. .++|||++|+..+.....++++.||++||.||++..+|..++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999753 4799999999999999999999999999999999999998888877654
No 25
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.65 E-value=6.5e-15 Score=141.84 Aligned_cols=118 Identities=31% Similarity=0.506 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
|+||||||++..+..+..+|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGH--YSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999998999999999999999887654 999999999999999999999974 467999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887654
No 26
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.65 E-value=6.7e-15 Score=141.77 Aligned_cols=153 Identities=21% Similarity=0.326 Sum_probs=124.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
|+||||||++..+..+..+|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP--YDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999999988999999999999999887644 999999999999999999999975 468999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccC-------C---cccccccCCCchhHHHH
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSG-------S---LEETDHHKRGSDEIEYA 182 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~s~-------s---l~~~~~~klt~~Eie~l 182 (663)
|+..+.+...++++.||++|+.||++.++|..+++.++++...........+ . ........++.+|.+++
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~E~~il 158 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALL 158 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhccccCCCCceeECCEEEEcccCEEEECCEEEecCHHHHHHH
Confidence 9999999999999999999999999999999999988764321110000000 0 00112235888999998
Q ss_pred hhhccC
Q 006044 183 SSVNEG 188 (663)
Q Consensus 183 ssv~eG 188 (663)
..+..+
T Consensus 159 ~~l~~~ 164 (219)
T PRK10336 159 ELLMRN 164 (219)
T ss_pred HHHHhC
Confidence 877765
No 27
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.65 E-value=5.4e-15 Score=141.53 Aligned_cols=164 Identities=15% Similarity=0.179 Sum_probs=129.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
|+|||+||++..+..++..|...++.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+..|+|+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 5899999999999999999998889886 7999999999988654 999999999999999999999975 46789999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc---ccCCcccccccCCCchhHHHHhhhccC
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---NSGSLEETDHHKRGSDEIEYASSVNEG 188 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e---~s~sl~~~~~~klt~~Eie~lssv~eG 188 (663)
+++..+.....+++..||++|+.||++.++|..+++.++++......... ............++.+|.+++..+..|
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~E~~vl~~l~~g 158 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDG 158 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCCcccCHHHHHHHHhccCCCcccccCCHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999998765322111100 000001111235788999999888888
Q ss_pred Ccchhhhhhhc
Q 006044 189 TEGTFKAQRKR 199 (663)
Q Consensus 189 se~~lka~~k~ 199 (663)
.....++....
T Consensus 159 ~~~~~I~~~l~ 169 (204)
T PRK09958 159 KDNNDIAEKMF 169 (204)
T ss_pred CCHHHHHHHhC
Confidence 65555544433
No 28
>PRK11173 two-component response regulator; Provisional
Probab=99.64 E-value=5.3e-15 Score=146.24 Aligned_cols=118 Identities=20% Similarity=0.419 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
.+||||||++..+..+...|+..++.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt 81 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEND--INLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 58999999999999999999999999999999999999987654 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 82 ~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9999998999999999999999999999999999888764
No 29
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.63 E-value=8.1e-15 Score=142.82 Aligned_cols=118 Identities=28% Similarity=0.412 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
|+||||||++..+..+...|...+|.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHL--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999987654 999999999999999999999975 468999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887653
No 30
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.63 E-value=1.6e-14 Score=139.93 Aligned_cols=118 Identities=25% Similarity=0.480 Sum_probs=109.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
|+||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD--YALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 58999999999999999999988999999999999999887654 9999999999999999999999876789999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999887654
No 31
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.63 E-value=5.9e-15 Score=161.99 Aligned_cols=122 Identities=34% Similarity=0.509 Sum_probs=113.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~IP 108 (663)
...+||||||+...++.++.+|...||.|..+.++.+|+..+.+.+ ||+||+|+.||++||+++++++|. ...+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~--~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELP--PDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcCC--CcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 5679999999999999999999999999999999999999998875 999999999999999999999974 35799
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~ 155 (663)
||++++.++.+...+||+.|+.|||.||+...+|...+++.++++..
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~ 255 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY 255 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999998888876654
No 32
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.63 E-value=1.1e-14 Score=141.43 Aligned_cols=118 Identities=22% Similarity=0.387 Sum_probs=110.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
++||||||++..+..+...|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~ 80 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQH--VDLILLDINLPGEDGLMLTRELRSRSTVGIILVT 80 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999999999999999999887654 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 81 GRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999887663
No 33
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.62 E-value=1.2e-14 Score=141.93 Aligned_cols=117 Identities=21% Similarity=0.475 Sum_probs=108.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVIIL 112 (663)
|+||||||++..+..+...|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +++|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD--YDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999988999999999999999887654 9999999999999999999999754 68999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
|+..+.+...++++.||++|+.||++.++|...++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988764
No 34
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.62 E-value=3e-15 Score=150.17 Aligned_cols=155 Identities=14% Similarity=0.101 Sum_probs=124.4
Q ss_pred HHHHHHHHHh---CCCeEEEECCHHHHHHHHHHcCCCceEEE---EecCCCCCCHHHHHHHHh-ccCCCcEEEEecCCCH
Q 006044 46 LRILEQMLRR---CLYNVTTCSQAAVALDILRERKGCFDVVL---SDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRV 118 (663)
Q Consensus 46 re~L~~lL~~---~gy~V~tasng~eALelLre~k~~pDLVI---LDI~MPdmDG~ELL~~Ir-~~~~IPVIILSa~~d~ 118 (663)
|.+++.+|.. .+|.|..+.+++++++.++... ||+|| +|+.||++||++++++|+ ..+.+|||++|++++.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~~--pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRIS--FSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccCC--CCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 6788899975 3566789999999999887654 89998 788999999999999996 5678999999998877
Q ss_pred HHHHHHH-hcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHhhhccCCcchhhhhh
Q 006044 119 SAVMRGI-RHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTEGTFKAQR 197 (663)
Q Consensus 119 e~v~kAl-~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~s~sl~~~~~~klt~~Eie~lssv~eGse~~lka~~ 197 (663)
..+.+++ +.||.+||.||.+.++|..+++.++++..+......... .......++.+|.+++..+.+|..++.++.+
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~~~~~~~~~--~~~~~~~LT~RE~eVL~ll~~G~snkeIA~~ 158 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQATDRLNNQW--YINQSRMLSPTEREILRFMSRGYSMPQIAEQ 158 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCcccCHHHHHHh--hccCcCCCCHHHHHHHHHHHCCCCHHHHHHH
Confidence 7676766 799999999999999999999999886543322111000 0011345899999999999999999999999
Q ss_pred hcccccc
Q 006044 198 KRISAKE 204 (663)
Q Consensus 198 k~Is~Ke 204 (663)
..++.+|
T Consensus 159 L~iS~~T 165 (207)
T PRK11475 159 LERNIKT 165 (207)
T ss_pred HCCCHHH
Confidence 8888663
No 35
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.61 E-value=1.6e-14 Score=142.86 Aligned_cols=118 Identities=19% Similarity=0.335 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
.+||||||++..++.+...|...+|.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.....|+|+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~--~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQ--PDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 48999999999999999999999999999999999999987654 9999999999999999999999876778999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+..+.....++++.||++||.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9988888889999999999999999999999998887653
No 36
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.61 E-value=1.7e-14 Score=140.50 Aligned_cols=117 Identities=32% Similarity=0.528 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
.+||||||++..+..++.+|...++.+..+.++.++++.+.. .||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 589999999999999999999889999999999999998753 39999999999999999999999865559999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999887654
No 37
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.61 E-value=2e-14 Score=138.43 Aligned_cols=119 Identities=29% Similarity=0.501 Sum_probs=109.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IPV 109 (663)
+++||||||++..+..++..|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERG--PDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcC--CCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 368999999999999999999988999999999999999987654 9999999999999999999999753 57899
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|++|+..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999887653
No 38
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.60 E-value=2.4e-14 Score=142.52 Aligned_cols=118 Identities=25% Similarity=0.439 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
.+||||||++..+..+...|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++....+|+|++|
T Consensus 2 ~~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt 79 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASET--VDVVVVDLNLGREDGLEIVRSLATKSDVPIIIIS 79 (241)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEE
Confidence 37999999999999999999999999999999999999887654 9999999999999999999999877789999999
Q ss_pred cC-CCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 114 AD-GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 114 a~-~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+. .+.....++++.||++|+.||++.++|...++.++++.
T Consensus 80 ~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 80 GDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 85 46667789999999999999999999999999887653
No 39
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.60 E-value=2.9e-14 Score=139.57 Aligned_cols=120 Identities=38% Similarity=0.598 Sum_probs=110.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVII 111 (663)
..++||||||++..+..+...|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++..+.+|+|+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~--~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ 82 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQ--PDLVILDVMMPKLDGYGVCQEIRKESDVPIIM 82 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEE
Confidence 3579999999999999999999988999999999999999887654 99999999999999999999998767899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+|++.+.....++++.||++||.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998887653
No 40
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.60 E-value=3.1e-14 Score=139.25 Aligned_cols=117 Identities=29% Similarity=0.485 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IPVI 110 (663)
.+||||||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 58999999999999999999988999999999999999887654 9999999999999999999999753 578999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
++|+..+.....++++.||++||.||++.++|...++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988765
No 41
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.60 E-value=2.8e-15 Score=155.54 Aligned_cols=115 Identities=30% Similarity=0.509 Sum_probs=105.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
+||+|||||......|..+|.+.++.+.+|+...+||+.+...+ |||||+||.||+|+|+|++++++. .+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~k--pDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFK--PDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhcC--CCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 58999999999999999999999999999999999999999877 999999999999999999999984 578999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
|++.+ +..+++...+.|||.||++.+.|.+++.+..+.
T Consensus 79 ssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ 116 (361)
T COG3947 79 SSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKR 116 (361)
T ss_pred ecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhcc
Confidence 99875 467788888999999999999999999988743
No 42
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.59 E-value=6.6e-14 Score=133.70 Aligned_cols=167 Identities=18% Similarity=0.265 Sum_probs=130.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPV 109 (663)
..+||||||++..+..++..|... ++.+. .+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTRP--VDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 368999999999999999999876 57765 7889999999887654 999999999999999999999975 467999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccc-c---ccC-CcccccccCCCchhHHHHhh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-E---NSG-SLEETDHHKRGSDEIEYASS 184 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~-e---~s~-sl~~~~~~klt~~Eie~lss 184 (663)
|++|...+.....++++.|+++|+.||++.++|..+++.++++........ . ... .........++.+|.+.+..
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~re~~vl~~ 160 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTDTVLSNREVTILRY 160 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCCceeCHHHHHHHHhcccccCccccccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999998877542211110 0 000 00011223578888888888
Q ss_pred hccCCcchhhhhhhccc
Q 006044 185 VNEGTEGTFKAQRKRIS 201 (663)
Q Consensus 185 v~eGse~~lka~~k~Is 201 (663)
+.+|.....++....++
T Consensus 161 l~~g~s~~eIa~~l~~s 177 (210)
T PRK09935 161 LVSGLSNKEIADQLLLS 177 (210)
T ss_pred HHcCCCHHHHHHHhCCC
Confidence 87886666666655443
No 43
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.58 E-value=2.8e-14 Score=142.57 Aligned_cols=162 Identities=12% Similarity=-0.014 Sum_probs=130.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHcCCCceEEEEecC--CCCCCHHHHHHHHhc-cCCC
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFKLLEHIGL-EMDL 107 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy---~V~tasng~eALelLre~k~~pDLVILDI~--MPdmDG~ELL~~Ir~-~~~I 107 (663)
|.|+||||++.+++.++.+|...++ .|..+.++.++++.+...+ ||+||+|+. |+.++|++++++|+. .+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~~--pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSLR--PSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhccC--CCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 4699999999999999999986542 4568999999999887654 999999966 888899999999964 6789
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCe-EEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHhhhc
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVN 186 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~d-YLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~s~sl~~~~~~klt~~Eie~lssv~ 186 (663)
+||++|++++..... ++..|+.. |+.|+.+.++|..+++.+..+........ .. ....++.+|.+++..+.
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~------~~-~~~~LT~RE~eVL~lla 150 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFL------NL-PTLSLSRTESSMLRMWM 150 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCccc------cC-CcccCCHHHHHHHHHHH
Confidence 999999998876643 56556554 89999999999999999987654332111 00 11248999999999999
Q ss_pred cCCcchhhhhhhccccccc
Q 006044 187 EGTEGTFKAQRKRISAKEE 205 (663)
Q Consensus 187 eGse~~lka~~k~Is~Kee 205 (663)
+|..++.++.+..++.++.
T Consensus 151 ~G~snkeIA~~L~iS~~TV 169 (207)
T PRK15411 151 AGQGTIQISDQMNIKAKTV 169 (207)
T ss_pred cCCCHHHHHHHcCCCHHHH
Confidence 9999999999988886643
No 44
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.58 E-value=4.4e-14 Score=136.62 Aligned_cols=119 Identities=29% Similarity=0.420 Sum_probs=108.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVII 111 (663)
.++||||||++..++.+...|...+|.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+|+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQP--PDLVILDVGLPDISGFELCRQLLAFHPALPVIF 80 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 368999999999999999999988999999999999999887644 9999999999999999999999754 7899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+|+..+......+++.||++|+.||++.++|..+++.++++.
T Consensus 81 ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 999999888999999999999999999999999998877653
No 45
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.58 E-value=5.9e-14 Score=136.86 Aligned_cols=117 Identities=27% Similarity=0.412 Sum_probs=107.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHhcc-CCCcEEE
Q 006044 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIM 111 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPd--mDG~ELL~~Ir~~-~~IPVII 111 (663)
+||||||++..+..+...|...+|.+..+.++.+++..+.... ||+||+|+.||+ .+|+++++.++.. +.+|+|+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQRL--PDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhCC--CCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 6999999999999999999988999999999999999987655 999999999998 5899999999754 6799999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+|+..+.+....++++||++|+.||++.++|...++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999888754
No 46
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.58 E-value=5.1e-14 Score=138.88 Aligned_cols=119 Identities=29% Similarity=0.491 Sum_probs=109.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVII 111 (663)
..+||||||++..+..++..|...+|.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~--~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRES--FHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999999999999999999999887654 9999999999999999999999754 6899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+++..+.+...++++.||++|+.||++.++|...++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999887653
No 47
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.58 E-value=8.5e-15 Score=171.98 Aligned_cols=120 Identities=29% Similarity=0.490 Sum_probs=111.1
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCC
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDL 107 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~--~~I 107 (663)
+-.+.+||||||++..++..+.+|++.|.+++.+.+|.+|++++.. .+.||+||+|++||.|||+|+.++||+. ..+
T Consensus 663 ~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~ 741 (786)
T KOG0519|consen 663 LLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKERWHL 741 (786)
T ss_pred cccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhcCCC
Confidence 4468999999999999999999999999999999999999999972 3469999999999999999999999854 489
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
|||+|||+.+.....+|++.|.++||.||+..+.|..+++.++
T Consensus 742 pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~ 784 (786)
T KOG0519|consen 742 PIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFL 784 (786)
T ss_pred CEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999888765
No 48
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.58 E-value=7.5e-15 Score=148.06 Aligned_cols=168 Identities=16% Similarity=0.139 Sum_probs=129.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHH-HHHhc-cCCCcE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL-EHIGL-EMDLPV 109 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL-~~Ir~-~~~IPV 109 (663)
...+|++|||+|..+.+|+.+|......+..+.++.++++.+. .|||||+|+.||+++|++++ +.|+. .+.++|
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~v 84 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKI 84 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcE
Confidence 3456999999999999999999864445667889999988743 28999999999999999997 55764 578999
Q ss_pred EEEecCCCHHHHHHHHh--cCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc-----ccCC--cccccccCCCchhHH
Q 006044 110 IMMSADGRVSAVMRGIR--HGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE-----NSGS--LEETDHHKRGSDEIE 180 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~--~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e-----~s~s--l~~~~~~klt~~Eie 180 (663)
|++|+.++. ...++. .||.+|+.|+.+.++|.++++.++++..+...... .... ........++.+|.+
T Consensus 85 vvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~Lt~rE~~ 162 (216)
T PRK10100 85 LLLNTPEDY--PYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHREKE 162 (216)
T ss_pred EEEECCchh--HHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCcccCHHHHHHHHHhhcccccCCCccCCCCHHHHH
Confidence 999998773 445565 49999999999999999999999876543322110 0000 000112358999999
Q ss_pred HHhhhccCCcchhhhhhhccccccc
Q 006044 181 YASSVNEGTEGTFKAQRKRISAKEE 205 (663)
Q Consensus 181 ~lssv~eGse~~lka~~k~Is~Kee 205 (663)
++..+..|..+..++....++.++.
T Consensus 163 Vl~l~~~G~s~~eIA~~L~iS~~TV 187 (216)
T PRK10100 163 ILNKLRIGASNNEIARSLFISENTV 187 (216)
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHH
Confidence 9999999999988888887776644
No 49
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.57 E-value=1.1e-13 Score=133.04 Aligned_cols=116 Identities=29% Similarity=0.519 Sum_probs=107.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILSa 114 (663)
|||+||++..+..+...|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|||+++.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKDD--YDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 689999999999999999988999999999999999887654 999999999999999999999974 57899999999
Q ss_pred CCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 115 ~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
..+.....++++.||++|+.||++.++|...++.++++.
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999888754
No 50
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.57 E-value=5.5e-14 Score=139.37 Aligned_cols=116 Identities=27% Similarity=0.423 Sum_probs=100.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-Ce-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCL-YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~g-y~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
+++|+||||++..++.++.+|...+ +. +..+.++.++++.+.... ||+||+|+.||+++|+++++.++.....+||
T Consensus 1 m~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~--~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii 78 (238)
T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRLK--PDVVFLDIQMPRISGLELVGMLDPEHMPYIV 78 (238)
T ss_pred CcEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHhcccCCCEEE
Confidence 4799999999999999999998876 33 457899999999987654 9999999999999999999999644445688
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
++|++. +.+.++++.||.+||.||++.++|..++.++.+.
T Consensus 79 ~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 79 FVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 888765 4678999999999999999999999999988754
No 51
>PRK14084 two-component response regulator; Provisional
Probab=99.55 E-value=1.2e-13 Score=138.06 Aligned_cols=116 Identities=19% Similarity=0.385 Sum_probs=100.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~g-y-~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVI 110 (663)
++||||||++..+..++.+|...+ + .+..+.++.+++..+.+.. ||+||+|+.||+++|+++++.|+.. +..++|
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~~--~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQ--YDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998764 4 5778999999999987654 9999999999999999999999754 456788
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
++|++.+ ...++++.||.+||.||++.++|..+++++.+..
T Consensus 79 ~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 79 FATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 8887654 5678999999999999999999999999887543
No 52
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.55 E-value=8.2e-15 Score=119.27 Aligned_cols=55 Identities=67% Similarity=1.033 Sum_probs=52.7
Q ss_pred CCcccccHHHHHHHHHHHHHhcc-CcccHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 006044 220 KPRVVWSVELHQQFVSAVNQLGI-DKAVPKRILELMNVPGLTRENVASHLQKFRLY 274 (663)
Q Consensus 220 KpRVvWTvELHrkFv~AVnqLGi-dKAvPKkILElMnVpgLTrenVASHLQKyRl~ 274 (663)
|+|+.||.|+|++|++||+.+|. +.|+||+|+++|++++||+++|+||+||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 68999999999999999999998 89999999999999999999999999999963
No 53
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.54 E-value=1.2e-13 Score=162.73 Aligned_cols=149 Identities=21% Similarity=0.260 Sum_probs=130.6
Q ss_pred ChhHHHHHHHcCCC-------CCCccccccccCCCCCC---------------CccEEEEEeCCHHHHHHHHHHHHhCCC
Q 006044 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQFP---------------AGLRVLVVDDDITCLRILEQMLRRCLY 58 (663)
Q Consensus 1 lai~~~~v~~mGGs-------g~gs~~~~dl~~~d~fP---------------~giRVLIVDDD~~~re~L~~lL~~~gy 58 (663)
|+|++++++.+||. |.|++|.+.++....-| .+.+||||||++..+..++..|...+|
T Consensus 643 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~~~~~~~~~~~~~~~~~~~ILvVddd~~~~~~l~~~L~~~G~ 722 (828)
T PRK13837 643 LATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSSKVPVAPQAFFGPGPLPRGRGETVLLVEPDDATLERYEEKLAALGY 722 (828)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCCCCCCCccccCCCcccCCCCCCEEEEEcCCHHHHHHHHHHHHHCCC
Confidence 58999999999994 77888888877532111 256899999999999999999999999
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 006044 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (663)
Q Consensus 59 ~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~ 137 (663)
.|..+.++.++++.+......||+||+ .||+++|+++++.|+. .+.+|||++++..+.....+++..| ++||.||+
T Consensus 723 ~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~ 799 (828)
T PRK13837 723 EPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIILGGNSKTMALSPDLLASV-AEILAKPI 799 (828)
T ss_pred EEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCC
Confidence 999999999999999765445899999 7999999999999974 5789999999999999999999999 99999999
Q ss_pred CHHHHHHHHHHHHHH
Q 006044 138 REEELKNIWQHVVRK 152 (663)
Q Consensus 138 s~eeLk~~Iq~VLrk 152 (663)
+.++|..+++++++.
T Consensus 800 ~~~~L~~~l~~~l~~ 814 (828)
T PRK13837 800 SSRTLAYALRTALAT 814 (828)
T ss_pred CHHHHHHHHHHHHcc
Confidence 999999999988764
No 54
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.54 E-value=3.8e-14 Score=151.66 Aligned_cols=119 Identities=22% Similarity=0.433 Sum_probs=106.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~I 107 (663)
....+||||||++..+..+..+|.+ .+.+..+.++.+|+..+.+.+ ||+||+|+.||+++|+++++.++. .+.+
T Consensus 153 ~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~~--~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~ 229 (457)
T PRK09581 153 DEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAETN--YDLVIVSANFENYDPLRLCSQLRSKERTRYV 229 (457)
T ss_pred ccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccCC--CCEEEecCCCCCchHhHHHHHHHhccccCCC
Confidence 3467899999999999999999976 477778999999999987654 999999999999999999999974 2689
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
|||++|++++.+++.+|++.||+|||.||++.++|...+....++
T Consensus 230 ~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 230 PILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred cEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888776543
No 55
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.53 E-value=4.1e-13 Score=126.50 Aligned_cols=170 Identities=18% Similarity=0.243 Sum_probs=131.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~-gy~V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IP 108 (663)
..++|||+||++..+..+...|... ++.+ ..+.++.+++..+.... ||+||+|+.|++++|+++++.++. .+..|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 79 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQLE--PDIVILDLGLPGMNGLDVIPQLHQRWPAMN 79 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHHCCCCc
Confidence 3578999999999999999999865 4654 47899999998887654 999999999999999999999974 46789
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccc-----ccccCCcccccccCCCchhHHHHh
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKE-----HENSGSLEETDHHKRGSDEIEYAS 183 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke-----~e~s~sl~~~~~~klt~~Eie~ls 183 (663)
+|++|...+......++..|+.+|+.||++.++|...++.++++....... ..............++.++.+++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~e~~vl~ 159 (211)
T PRK15369 80 ILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGKRYIDPALNREAILALLNADDTNPPLLTPRERQILK 159 (211)
T ss_pred EEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCceeCHHHHHHHHHHhccCCCCcccCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999887653221100 000000111223457888899988
Q ss_pred hhccCCcchhhhhhhccccc
Q 006044 184 SVNEGTEGTFKAQRKRISAK 203 (663)
Q Consensus 184 sv~eGse~~lka~~k~Is~K 203 (663)
.+.+|.....++....++.+
T Consensus 160 l~~~g~~~~~Ia~~l~~s~~ 179 (211)
T PRK15369 160 LITEGYTNRDIAEQLSISIK 179 (211)
T ss_pred HHHCCCCHHHHHHHhCCCHH
Confidence 88888776666665544433
No 56
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.53 E-value=5.2e-13 Score=128.55 Aligned_cols=118 Identities=28% Similarity=0.503 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
|+||++||++..+..++..|...++.+..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+++|+|++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSEM--YALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999988999999999999998887654 999999999999999999999974 467999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+...+.....++++.|+++|+.||++.++|...++.++++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887754
No 57
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.53 E-value=2e-13 Score=138.36 Aligned_cols=118 Identities=28% Similarity=0.427 Sum_probs=104.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-C--CC
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-M--DL 107 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~-gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~--~I 107 (663)
.++||||||++..+..+..+|... ++. +..+.++.++++.+.... ||+||+|+.||++||+++++.++.. . ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQQ--PDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 479999999999999999999864 445 457999999999998765 9999999999999999999999743 2 37
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
|+|++|+..+.....++++.|+++|+.||++.++|...+++++.+
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999999999999999999999999999999999887654
No 58
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.52 E-value=1e-13 Score=132.46 Aligned_cols=112 Identities=24% Similarity=0.454 Sum_probs=105.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006044 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILS 113 (663)
..||||||..++..|...+++.||.|.++.+.++||..++... |.-.++|+.|.+.+|+++++.|+. ..+..||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~--PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAP--PAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcCC--CceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 6899999999999999999999999999999999999999865 999999999999999999999984 5789999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHH
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~ 148 (663)
++.+...+.+|++.|||+||.||-+.+++..++..
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence 99999999999999999999999999999877653
No 59
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.52 E-value=5.3e-13 Score=127.45 Aligned_cols=168 Identities=18% Similarity=0.299 Sum_probs=130.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~-gy~V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IP 108 (663)
...+||||||++..+..++.+|... ++.+ ..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+..|
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~ 82 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSGR 82 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 3468999999999999999999764 5554 47899999999987654 999999999999999999999974 46789
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccc--------cccCCcccccccCCCchhHH
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH--------ENSGSLEETDHHKRGSDEIE 180 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~--------e~s~sl~~~~~~klt~~Eie 180 (663)
+|+++...+......+++.|+.+|+.||++.++|...++.++++........ .............++.+|.+
T Consensus 83 vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~ 162 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRERD 162 (216)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcccCHHHHHHHHHHhhcccCccccccccCCHHHHH
Confidence 9999999999999999999999999999999999999999886532211110 00000001112248889999
Q ss_pred HHhhhccCCcchhhhhhhccc
Q 006044 181 YASSVNEGTEGTFKAQRKRIS 201 (663)
Q Consensus 181 ~lssv~eGse~~lka~~k~Is 201 (663)
++..+.+|..+..++....++
T Consensus 163 vl~~l~~g~~~~~ia~~l~is 183 (216)
T PRK10651 163 ILKLIAQGLPNKMIARRLDIT 183 (216)
T ss_pred HHHHHHcCCCHHHHHHHcCCC
Confidence 999988887777766655444
No 60
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.52 E-value=1.6e-13 Score=128.71 Aligned_cols=119 Identities=31% Similarity=0.480 Sum_probs=108.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
.+.+||||||++..+..+...|...+|.+..+.++.++++.+.... ||+||+|+.|++++|+++++.++. .+.+|+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~ii 79 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLR--FGCVVTDVRMPGIDGIELLRRLKARGSPLPVI 79 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccCC--CCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEE
Confidence 4578999999999999999999988999999999999998887654 999999999999999999999974 4678999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+++...+......+++.|+.+|+.||+..+++...++.++..
T Consensus 80 ~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 80 VMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988887764
No 61
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.51 E-value=3.7e-13 Score=128.09 Aligned_cols=165 Identities=22% Similarity=0.250 Sum_probs=127.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~-~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPV 109 (663)
.++||||||++..+..++..|.. .++.+. .+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLD--PDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 47899999999999999999975 467764 7899999999887654 9999999999999999999999754 57899
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccc-----c-ccCCcccccccCCCchhHHHHh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEH-----E-NSGSLEETDHHKRGSDEIEYAS 183 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~-----e-~s~sl~~~~~~klt~~Eie~ls 183 (663)
|+++...+......+++.|+++|+.||++.++|..+++.++++........ . ............++.+|.+++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~e~~vl~ 163 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELDVLH 163 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCCeecCHHHHHHHHhhhccCCCCcccccCCHHHHHHHH
Confidence 999999888889999999999999999999999999998765432111000 0 0000011112357889999998
Q ss_pred hhccCCcchhhhhhhc
Q 006044 184 SVNEGTEGTFKAQRKR 199 (663)
Q Consensus 184 sv~eGse~~lka~~k~ 199 (663)
.+.+|......+.+..
T Consensus 164 ~~~~g~s~~~ia~~l~ 179 (215)
T PRK10403 164 ELAQGLSNKQIASVLN 179 (215)
T ss_pred HHHCCCCHHHHHHHcC
Confidence 8888866665555443
No 62
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.50 E-value=2.1e-13 Score=148.43 Aligned_cols=119 Identities=37% Similarity=0.623 Sum_probs=110.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
.+++||||||++..+..++.+|...+|.|..+.++.+++..+.... ||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQV--FDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 4589999999999999999999999999999999999999887654 999999999999999999999974 4679999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
++|++.+.+.+.++++.||.+|+.||++.++|...+++++++
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888764
No 63
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.49 E-value=4.1e-13 Score=147.01 Aligned_cols=120 Identities=34% Similarity=0.530 Sum_probs=110.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IP 108 (663)
++...+||||||++..+..+...|...+|.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|
T Consensus 1 ~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlillD~~~p~~~g~~ll~~i~~~~~~~p 78 (457)
T PRK11361 1 MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIH--PDVVLMDIRMPEMDGIKALKEMRSHETRTP 78 (457)
T ss_pred CCCCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Confidence 355678999999999999999999999999999999999999987654 999999999999999999999974 46899
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
||++|++.+.+...++++.|+.+|+.||++.++|...+++++.
T Consensus 79 vI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~ 121 (457)
T PRK11361 79 VILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQ 121 (457)
T ss_pred EEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999998887654
No 64
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.49 E-value=1e-12 Score=128.60 Aligned_cols=117 Identities=27% Similarity=0.436 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
.+||||||++..+..+..+|...++.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++....+|+|+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQTP--PDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 38999999999999999999998999999999999999987654 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
...+......+++.||++|+.||++.++|...++.++++
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~ 127 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhh
Confidence 999888889999999999999999999999999887764
No 65
>PRK15115 response regulator GlrR; Provisional
Probab=99.48 E-value=5e-13 Score=146.16 Aligned_cols=118 Identities=30% Similarity=0.528 Sum_probs=109.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
..+||||||++..+..+...|...+|.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~~--~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNREK--VDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 378999999999999999999999999999999999999987654 999999999999999999999964 46799999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+|+..+.+...++++.||.+|+.||++.++|...++++++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 66
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.48 E-value=7.6e-13 Score=145.87 Aligned_cols=117 Identities=35% Similarity=0.495 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
.+||||||++..+..++.+|...+|.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.|+. .+.+|||++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~~--~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 58999999999999999999999999999999999999998654 999999999999999999999974 467999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
|++.+.+...++++.|+.+|+.||++.++|...+++++..
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887754
No 67
>PRK13557 histidine kinase; Provisional
Probab=99.46 E-value=1.1e-12 Score=143.38 Aligned_cols=150 Identities=23% Similarity=0.321 Sum_probs=129.7
Q ss_pred ChhHHHHHHHcCCC-------CCCccccccccCCCC--------------CCCccEEEEEeCCHHHHHHHHHHHHhCCCe
Q 006044 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPDQ--------------FPAGLRVLVVDDDITCLRILEQMLRRCLYN 59 (663)
Q Consensus 1 lai~~~~v~~mGGs-------g~gs~~~~dl~~~d~--------------fP~giRVLIVDDD~~~re~L~~lL~~~gy~ 59 (663)
|+|++++++.+||. |.|+.|++.++.... -+.+.+||||||++..+..+..+|...+|.
T Consensus 362 L~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~~~~~~~~~~~~~~~~~~~~~~iliv~~~~~~~~~l~~~l~~~~~~ 441 (540)
T PRK13557 362 LSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASDQAENPEQEPKARAIDRGGTETILIVDDRPDVAELARMILEDFGYR 441 (540)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCCCccCCCCCCCCcccccCCCceEEEEcCcHHHHHHHHHHHHhcCCe
Confidence 57999999999994 778888887766321 013568999999999999999999988999
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 006044 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (663)
Q Consensus 60 V~tasng~eALelLre~k~~pDLVILDI~MPd-mDG~ELL~~Ir~-~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~ 137 (663)
+..+.++.++++.+... ..||+||+|..|++ ++|+++++.|+. .+.+|+|+++...+......++..|+.+|+.||+
T Consensus 442 v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~ 520 (540)
T PRK13557 442 TLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLLTTGYAEASIERTDAGGSEFDILNKPY 520 (540)
T ss_pred EEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEEEEcCCCchhhhhhhccccCCceeeCCC
Confidence 99999999999988643 24999999999997 999999999975 4679999999999888888899999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 006044 138 REEELKNIWQHVVR 151 (663)
Q Consensus 138 s~eeLk~~Iq~VLr 151 (663)
+.++|...++.++.
T Consensus 521 ~~~~l~~~l~~~~~ 534 (540)
T PRK13557 521 RRAELARRVRMVLD 534 (540)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999887654
No 68
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.46 E-value=8.9e-13 Score=140.01 Aligned_cols=102 Identities=25% Similarity=0.363 Sum_probs=90.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLR-RCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~-~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVII 111 (663)
++||||||++..+..++.+|. ..++.+. .+.++.++++.+.... ||+|++|+.||+|+|++++++|+....+|||+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~~--pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQP--PDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999995 5577775 7899999999998755 99999999999999999999998766799999
Q ss_pred EecCCC--HHHHHHHHhcCCCeEEeCCC
Q 006044 112 MSADGR--VSAVMRGIRHGACDYLIKPI 137 (663)
Q Consensus 112 LSa~~d--~e~v~kAl~~GA~dYLlKP~ 137 (663)
+++..+ .+...++++.|+.+|+.||+
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 998754 56677899999999999999
No 69
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.45 E-value=9.9e-13 Score=143.85 Aligned_cols=112 Identities=25% Similarity=0.413 Sum_probs=103.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCC-----CCHHHHHHHHhc-cCCCcE
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPd-----mDG~ELL~~Ir~-~~~IPV 109 (663)
||||||++..+..+...| .+|.|..+.++.+|++.+.... ||+||+|+.||+ ++|+++++.++. .+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~~--~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRHE--PAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999988 6899999999999999998764 999999999996 899999999964 578999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|++|+..+.+...++++.||++||.||++.++|..++++++.
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999999988765
No 70
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.43 E-value=1.9e-12 Score=142.12 Aligned_cols=115 Identities=35% Similarity=0.527 Sum_probs=106.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILSa 114 (663)
||||||++..+..+...|...+|.|..+.++.+|+..+.... ||+||+|+.||+++|+++++.++. .+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARGQ--PDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 689999999999999999988999999999999999987654 999999999999999999999974 46799999999
Q ss_pred CCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 115 DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 115 ~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+.+.....++++.|+.+|+.||++.++|...+++++..
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887754
No 71
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.42 E-value=1.1e-11 Score=105.98 Aligned_cols=118 Identities=33% Similarity=0.570 Sum_probs=105.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCc
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IP 108 (663)
.++|+++|+++.....++..|...++. +..+.++.+++..+.... +|++++|..+++++|+++++.++.. +.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--FGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhccC--CCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 479999999999999999999988884 778899999999887654 9999999999999999999999743 5689
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+|+++...+.....++++.|+.+|+.||++.+++...+++++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999888888899999999999999999999999999887754
No 72
>PRK13435 response regulator; Provisional
Probab=99.42 E-value=4.7e-12 Score=116.55 Aligned_cols=116 Identities=22% Similarity=0.314 Sum_probs=101.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MP-dmDG~ELL~~Ir~~~~IPVI 110 (663)
+++|||+|+++..+..+...|...++.+. .+.++.++++.+.... ||+||+|+.|+ +.+|+++++.++....+|+|
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~dliivd~~~~~~~~~~~~~~~l~~~~~~pii 82 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQ--PDVALVDVHLADGPTGVEVARRLSADGGVEVV 82 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcC--CCEEEEeeecCCCCcHHHHHHHHHhCCCCCEE
Confidence 57999999999999999999998888876 7899999999887644 99999999998 58999999999766789999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+++...+. ..++..|+++|+.||++.++|...+++++.++
T Consensus 83 ~ls~~~~~---~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (145)
T PRK13435 83 FMTGNPER---VPHDFAGALGVIAKPYSPRGVARALSYLSARR 122 (145)
T ss_pred EEeCCHHH---HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcC
Confidence 99976442 46788999999999999999999999887654
No 73
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.41 E-value=6.1e-12 Score=134.71 Aligned_cols=118 Identities=35% Similarity=0.524 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IPVI 110 (663)
.+||||||++..+..+...|...+|.+..+.++.+++..+.... ||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQ--PDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 48999999999999999999888999999999999999998754 9999999999999999999999753 368999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
++|+..+.....++++.||++|+.||++.++|..+++.+++.+
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLK 123 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998877643
No 74
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.38 E-value=7.3e-12 Score=133.76 Aligned_cols=104 Identities=33% Similarity=0.454 Sum_probs=91.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
+++||||||++..+..++.+|... ++.+. .+.++.++++.+.... ||+|++|+.||+++|++++++|+....+|+|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~~--~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKLN--PDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhhC--CCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999876 77776 8999999999987655 9999999999999999999999765559999
Q ss_pred EEecCC--CHHHHHHHHhcCCCeEEeCCCC
Q 006044 111 MMSADG--RVSAVMRGIRHGACDYLIKPIR 138 (663)
Q Consensus 111 ILSa~~--d~e~v~kAl~~GA~dYLlKP~s 138 (663)
++|+.. ......++++.|+++||.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 999754 3466778999999999999994
No 75
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.37 E-value=3.4e-12 Score=136.87 Aligned_cols=104 Identities=35% Similarity=0.471 Sum_probs=94.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~g--y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
++|||||||....|+.|+++|...+ +.|.++.|+.+|++++.+.. ||+|.+|+.||.|||++++++|-....+|||
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~--PDVi~ld~emp~mdgl~~l~~im~~~p~pVi 78 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLK--PDVITLDVEMPVMDGLEALRKIMRLRPLPVI 78 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcC--CCEEEEecccccccHHHHHHHHhcCCCCcEE
Confidence 4799999999999999999999886 66789999999999999876 9999999999999999999999766899999
Q ss_pred EEecCCC--HHHHHHHHhcCCCeEEeCCCC
Q 006044 111 MMSADGR--VSAVMRGIRHGACDYLIKPIR 138 (663)
Q Consensus 111 ILSa~~d--~e~v~kAl~~GA~dYLlKP~s 138 (663)
|+|+... .+...+|+++||.||+.||..
T Consensus 79 mvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 79 MVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 9987543 577889999999999999974
No 76
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.37 E-value=5.4e-12 Score=144.47 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=104.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
.++||||||++..+..++.+|...+|.|..+.++.+++..+.... |||||+|+.||+++|++++++|+. .+.+|||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~~--~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAGE--IDCVVADHEPDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhccC--CCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 479999999999999999999888999999999999999887654 999999999999999999999974 57899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHH--HHHHHHHHHHHH
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREE--ELKNIWQHVVRK 152 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~e--eLk~~Iq~VLrk 152 (663)
+|+..+.+...++++.|+.+|+.||.... .+..+++.++..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999997543 555666655543
No 77
>PRK09191 two-component response regulator; Provisional
Probab=99.28 E-value=8.3e-11 Score=118.28 Aligned_cols=115 Identities=23% Similarity=0.320 Sum_probs=98.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCcEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPd-mDG~ELL~~Ir~~~~IPVII 111 (663)
.+|||+||++..+..++..|+..++.+. .+.++.++++.+.... ||+||+|+.||+ ++|+++++.++....+|||+
T Consensus 138 ~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~~--~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii~ 215 (261)
T PRK09191 138 TRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKTR--PGLILADIQLADGSSGIDAVNDILKTFDVPVIF 215 (261)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhccC--CCEEEEecCCCCCCCHHHHHHHHHHhCCCCEEE
Confidence 4799999999999999999998888877 7889999999987654 999999999995 89999999997544899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+|+..+.... +...|+.+|+.||++.++|...+++++..
T Consensus 216 ls~~~~~~~~--~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 216 ITAFPERLLT--GERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EeCCCcHHHH--HHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9997765433 44567889999999999999999887643
No 78
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.23 E-value=8.3e-11 Score=116.61 Aligned_cols=119 Identities=24% Similarity=0.336 Sum_probs=103.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
..++||++||++..+..++..|...||.+ +.+.++.++.+.+.... ||+||+|+.||..|-.+-+.........|||
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~--pDvVildie~p~rd~~e~~~~~~~~~~~piv 81 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQ--PDVVILDIEMPRRDIIEALLLASENVARPIV 81 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhcC--CCEEEEecCCCCccHHHHHHHhhcCCCCCEE
Confidence 34789999999999999999999999964 57888889999888766 9999999999999944444444456788999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
++|++++...+..+++.|+.+||+||++...|+.++.-+..+
T Consensus 82 ~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~sr 123 (194)
T COG3707 82 ALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSR 123 (194)
T ss_pred EEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHH
Confidence 999999999999999999999999999999999988876654
No 79
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.21 E-value=3e-10 Score=92.12 Aligned_cols=111 Identities=36% Similarity=0.583 Sum_probs=99.1
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecC
Q 006044 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSAD 115 (663)
Q Consensus 37 LIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILSa~ 115 (663)
+++|+++..+..+...+...++.+..+.+..+++..+.... +|++|+|..+++.+|+++++.++. .+.+|+|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEK--PDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhCC--CCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 47899999999999999988999999999999999887654 999999999999999999999975 467899999988
Q ss_pred CCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 006044 116 GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (663)
Q Consensus 116 ~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~V 149 (663)
.......+++..|+.+|+.||++.++|...++++
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 8888888999999999999999999998887653
No 80
>PRK10693 response regulator of RpoS; Provisional
Probab=99.10 E-value=5.8e-10 Score=117.51 Aligned_cols=90 Identities=24% Similarity=0.463 Sum_probs=80.4
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCC-CH
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI-RE 139 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~-s~ 139 (663)
.+.++.+|++.+.... ||+||+|+.||+++|++++++++. .+.+|||++|+..+.+.+.++++.||+|||.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~~--pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGFT--PDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 4788999999997654 999999999999999999999975 4679999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHHh
Q 006044 140 EELKNIWQHVVRKR 153 (663)
Q Consensus 140 eeLk~~Iq~VLrkk 153 (663)
++|...+.++++..
T Consensus 80 ~~L~~~i~~~l~~~ 93 (303)
T PRK10693 80 NRLREMVFACLYPS 93 (303)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999888876543
No 81
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.06 E-value=7.1e-10 Score=114.09 Aligned_cols=116 Identities=28% Similarity=0.435 Sum_probs=99.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~-gy-~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPV 109 (663)
+++|++|||++..++.|+.++... .+ .+..+.++.++++.++... +|++++||.||+++|+++...|+. .+..+|
T Consensus 1 m~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~fldI~~~~~~G~ela~~i~~~~~~~~I 78 (244)
T COG3279 1 MLKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLR--PDLVFLDIAMPDINGIELAARIRKGDPRPAI 78 (244)
T ss_pred CCcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhccC--CCeEEEeeccCccchHHHHHHhcccCCCCeE
Confidence 478999999999999999999842 22 2347899999999998764 999999999999999999999986 456778
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+++|++++ ++..+++..|.|||.||+..+.|...++.+.+.
T Consensus 79 vfvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 79 VFVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 88998765 467788999999999999999999999876553
No 82
>PRK15029 arginine decarboxylase; Provisional
Probab=98.92 E-value=9.1e-09 Score=120.62 Aligned_cols=115 Identities=12% Similarity=0.190 Sum_probs=90.7
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHH----HHHHHH
Q 006044 34 LRVLVVDDDIT--------CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF----KLLEHI 101 (663)
Q Consensus 34 iRVLIVDDD~~--------~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~----ELL~~I 101 (663)
|||||||||.. .++.|+..|+..+|+|..+.++.+|++.+... ..||+||+|++||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 58999999995 69999999999999999999999999999763 249999999999999998 899999
Q ss_pred hc-cCCCcEEEEecCCC--HHHHHHHHhcCCCeEEeCCCCHHHH-HHHHHHHH
Q 006044 102 GL-EMDLPVIMMSADGR--VSAVMRGIRHGACDYLIKPIREEEL-KNIWQHVV 150 (663)
Q Consensus 102 r~-~~~IPVIILSa~~d--~e~v~kAl~~GA~dYLlKP~s~eeL-k~~Iq~VL 150 (663)
|. ..++|||++|+..+ .+...+.+ --+.+|+.+--+..++ ...+....
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRDLL-ELVDEFAWILEDTADFIAGRAVAAM 131 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHHHH-HhhheEEEecCCCHHHHHHHHHHHH
Confidence 85 46899999999986 33333322 2356788887554443 34444443
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.17 E-value=1.8e-05 Score=93.68 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=118.9
Q ss_pred ChhHHHHHHHcCCC-------CCCccccccccCCC-----------CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEE
Q 006044 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPD-----------QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTT 62 (663)
Q Consensus 1 lai~~~~v~~mGGs-------g~gs~~~~dl~~~d-----------~fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~t 62 (663)
|+|++++++.|||+ |.|++|++.+++.. ....+.+|+|+||++..+..+..+|..+++.+..
T Consensus 486 L~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~~~~~~~~~~~~~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~ 565 (919)
T PRK11107 486 LVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLDLNPNPIIDGLPTDCLAGKRLLYVEPNSAAAQATLDILSETPLEVTY 565 (919)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEeccCCccccccCCccccCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEE
Confidence 58999999999994 78999988887631 1235689999999999999999999999999999
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hc--cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCH
Q 006044 63 CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (663)
Q Consensus 63 asng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~I-r~--~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~ 139 (663)
+.+..+ +.. ..||++|+|+.||++++.+.+... +. ....++|+++...+......+.+.|+++|+.||+..
T Consensus 566 ~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~ 639 (919)
T PRK11107 566 SPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSH 639 (919)
T ss_pred cCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCH
Confidence 988877 333 349999999999998877665544 32 234568888888888888999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006044 140 EELKNIWQHVV 150 (663)
Q Consensus 140 eeLk~~Iq~VL 150 (663)
.++...+....
T Consensus 640 ~~l~~~l~~~~ 650 (919)
T PRK11107 640 TRLLPALLEPC 650 (919)
T ss_pred HHHHHHHHHhh
Confidence 99988887654
No 84
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=98.16 E-value=2.3e-06 Score=102.80 Aligned_cols=85 Identities=15% Similarity=0.231 Sum_probs=69.0
Q ss_pred ChhHHHHHHHcCCC-------CCCccccccccCCC----------CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEE
Q 006044 1 MAALQRIVQSSGGS-------GYGSSRAADVAVPD----------QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTC 63 (663)
Q Consensus 1 lai~~~~v~~mGGs-------g~gs~~~~dl~~~d----------~fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~ta 63 (663)
|+||++||+.|||. |.|++|.+.+++.. ....+.+||||||++.+++.++.+|+.+|+.|.++
T Consensus 640 LaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~~~~~~~~~~~~~~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a 719 (894)
T PRK10618 640 FFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKMLAADPEVEEEEEKLLDGVTVLLDITSEEVRKIVTRQLENWGATCITP 719 (894)
T ss_pred HHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEccCCcccccccccccCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEc
Confidence 58999999999994 89999999888731 12256899999999999999999999999999988
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecCCCCCCH
Q 006044 64 SQAAVALDILRERKGCFDVVLSDVHMPDMDG 94 (663)
Q Consensus 64 sng~eALelLre~k~~pDLVILDI~MPdmDG 94 (663)
.++. . ...|||||+|+++ +++|
T Consensus 720 ~~~~------~--~~~~Dlvl~D~~~-~~~~ 741 (894)
T PRK10618 720 DERL------I--SQEYDIFLTDNPS-NLTA 741 (894)
T ss_pred Cccc------c--CCCCCEEEECCCC-cCCC
Confidence 7632 1 2349999999984 4443
No 85
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.02 E-value=5e-06 Score=92.36 Aligned_cols=94 Identities=35% Similarity=0.511 Sum_probs=83.0
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 57 gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
.++|.++..+.+++..+...+ +|.+++|+.||+|+|+++++.++..+.. ++++|+.++.....+++++|+.+||+||
T Consensus 12 ~~~v~~a~~g~~~l~~~~~~~--~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~ 88 (435)
T COG3706 12 YKEVATAKKGLIALAILLDHK--PDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKP 88 (435)
T ss_pred hhhhhhccchHHHHHHHhcCC--CCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCC
Confidence 367778999999999998765 9999999999999999999999876655 8999999998889999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q 006044 137 IREEELKNIWQHVVRKR 153 (663)
Q Consensus 137 ~s~eeLk~~Iq~VLrkk 153 (663)
+....+......+.+.+
T Consensus 89 ~~~~~~~~r~~~l~~~k 105 (435)
T COG3706 89 VNDSQLFLRAKSLVRLK 105 (435)
T ss_pred CChHHHHHhhhhhccch
Confidence 99999888877776544
No 86
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.45 E-value=0.001 Score=46.71 Aligned_cols=55 Identities=40% Similarity=0.643 Sum_probs=48.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MP 90 (663)
++|+++|+++..+..+...+...++.+..+.+..+++..+.... +|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEK--PDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCC
Confidence 47999999999999999999988999999999999998887654 99999998654
No 87
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.32 E-value=0.0017 Score=59.45 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=74.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hccCCCcEEEEe
Q 006044 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMS 113 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~I-r~~~~IPVIILS 113 (663)
||||||||..-+..|+.+|+-.|+.+..++...- ........ .+.+++-..-.+ ...++++.+ +..+.+||+++.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~~--~~~~~v~~g~~~-~~~~~l~~l~~~~~~~Pvlllg 76 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSSP--WEACAVILGSCS-KLAELLKELLKWAPHIPVLLLG 76 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhcC--CcEEEEEecCch-hHHHHHHHHHhhCCCCCEEEEC
Confidence 6999999999999999999988998877765443 23333322 454444332222 445666666 466899999998
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~V 149 (663)
........ ..+.+-|..|+++.+|..+++++
T Consensus 77 ~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 77 EHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 77665111 12667799999999999999875
No 88
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=95.81 E-value=0.25 Score=45.74 Aligned_cols=110 Identities=12% Similarity=0.007 Sum_probs=78.8
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhcc-
Q 006044 35 RVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE- 104 (663)
Q Consensus 35 RVLIV----DDD~~~re~L~~lL~~~gy~V~t---asng~eALelLre~k~~pDLVILDI~MPdm--DG~ELL~~Ir~~- 104 (663)
||++. |.|..=...+..+|+..||+|.. ....++.++.+.+.+ +|+|.+-..++.. .--++++.+++.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~--~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQED--VDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 35555 66777777888889999999874 446788888888765 9999998877532 123455666544
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Q 006044 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (663)
Q Consensus 105 ~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~I 146 (663)
+.-..|++-+....+...++.++|.++|+..--..++....+
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 434456666555566677888999999999888888776544
No 89
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.51 E-value=0.12 Score=47.63 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHh-ccCCCcEEEEecCCCHHHH
Q 006044 45 CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG-LEMDLPVIMMSADGRVSAV 121 (663)
Q Consensus 45 ~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPd--mDG~ELL~~Ir-~~~~IPVIILSa~~d~e~v 121 (663)
....|...|...+++|..+.+..+++..++... .+..|++|+. ++ ....++++.|+ ....+||.+++.....+.+
T Consensus 5 ~~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~~-~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l 82 (115)
T PF03709_consen 5 ASRELAEALEQRGREVVDADSTDDALAIIESFT-DIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDL 82 (115)
T ss_dssp HHHHHHHHHHHTTTEEEEESSHHHHHHHHHCTT-TEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCC
T ss_pred HHHHHHHHHHHCCCEEEEeCChHHHHHHHHhCC-CeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccC
Confidence 345677788878999999999999999999764 6899999986 21 23457788886 4689999999987655555
Q ss_pred HHHHhcCCCeEEeCCC-CHHHHHHHHHHHHH
Q 006044 122 MRGIRHGACDYLIKPI-REEELKNIWQHVVR 151 (663)
Q Consensus 122 ~kAl~~GA~dYLlKP~-s~eeLk~~Iq~VLr 151 (663)
-..+-..+++|+...- +.+.+...+..+.+
T Consensus 83 ~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~ 113 (115)
T PF03709_consen 83 PAEVLGEVDGFIWLFEDTAEFIARRIEAAAR 113 (115)
T ss_dssp CHHHHCCESEEEETTTTTHHHHHHHHHHHHH
T ss_pred CHHHHhhccEEEEecCCCHHHHHHHHHHHHH
Confidence 4455567788988875 45555566665554
No 90
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.47 E-value=0.47 Score=45.32 Aligned_cols=115 Identities=15% Similarity=0.045 Sum_probs=84.1
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhc
Q 006044 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (663)
Q Consensus 33 giRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asng~eALelLre~k~~pDLVILDI~MPdm--DG~ELL~~Ir~ 103 (663)
+.+||+. |.|..=...+..+|+..||+|+. ....++.++.+.+.. +|+|.+-..|... ..-++++.+++
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~--~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETD--ADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4578888 88888888999999999999874 456788888888765 9999999888742 23456667764
Q ss_pred c-C-CCcEEEEecCC------CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 104 E-M-DLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 104 ~-~-~IPVIILSa~~------d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
. . +++|+ +-+.. ..+...++.+.|++......-..+++...+++.+
T Consensus 81 ~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~ 134 (137)
T PRK02261 81 AGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDL 134 (137)
T ss_pred cCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 3 3 55444 33322 3455677889999888888888888887776654
No 91
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.08 E-value=0.25 Score=44.98 Aligned_cols=94 Identities=11% Similarity=-0.019 Sum_probs=65.8
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhccCC-CcEEEEe
Q 006044 40 DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEMD-LPVIMMS 113 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~t---asng~eALelLre~k~~pDLVILDI~MPdm--DG~ELL~~Ir~~~~-IPVIILS 113 (663)
|.+..=...+..+|+..||+|.. ....++.++.+.+.+ ||+|.+-..+... +..++++.+++... -+.|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~--pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEED--ADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 66677788899999999999853 345678888887765 9999998876542 34566777765432 3445566
Q ss_pred cCCCHHHHHHHHhcCCCeEEeC
Q 006044 114 ADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlK 135 (663)
+.........+.+.|++.|+..
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECC
Confidence 6555444456788999766653
No 92
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.30 E-value=2 Score=40.89 Aligned_cols=116 Identities=10% Similarity=-0.021 Sum_probs=78.2
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCC-CCH-HHHHHHHhcc
Q 006044 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE 104 (663)
Q Consensus 34 iRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asng~eALelLre~k~~pDLVILDI~MPd-mDG-~ELL~~Ir~~ 104 (663)
.||++. |-|..=...+..+|+..||+|.. ..+.++.++.+.+.. +|+|.+-..+.. +.. -++++.|++.
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~--adii~iSsl~~~~~~~~~~~~~~L~~~ 80 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDKL 80 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEcCchhhhHHHHHHHHHHHHhc
Confidence 455554 55566677788888888999873 557889999888765 999888776632 222 2344555542
Q ss_pred -CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 105 -MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 105 -~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.....|++-+....+...+..++|+++|+..--+..++...+.+.+.
T Consensus 81 g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 81 GRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred CCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 32233444543444556778899999999988888888877776543
No 93
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=92.02 E-value=0.44 Score=37.03 Aligned_cols=48 Identities=29% Similarity=0.384 Sum_probs=39.2
Q ss_pred cccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006044 222 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFR 272 (663)
Q Consensus 222 RVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASHLQKyR 272 (663)
|-.||.|-+..|+++|.+.|.+ .-++|.+.|. ++.|..++.+|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 3479999999999999999966 3578998866 5899999999988874
No 94
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=91.27 E-value=1.9 Score=51.56 Aligned_cols=114 Identities=12% Similarity=0.073 Sum_probs=74.0
Q ss_pred cEEEEEeCCH-HH-----HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCC
Q 006044 34 LRVLVVDDDI-TC-----LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (663)
Q Consensus 34 iRVLIVDDD~-~~-----re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir-~~~~ 106 (663)
|+|+|||++- .. .+.|.+.|++.+|.|..+.+..+++..++.. .....|++|+.-. ..++++.++ ...+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 5788888874 22 4566677778899999999999999998854 4688999996332 355888886 4579
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCC-HHHHHHHHHHHHH
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIR-EEELKNIWQHVVR 151 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s-~eeLk~~Iq~VLr 151 (663)
+||+++........+-...-.-..+|+..-.+ .+.+...+....+
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~ 122 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTN 122 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHH
Confidence 99999876543332222222334556554432 3444444444443
No 95
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=90.88 E-value=4.6 Score=36.28 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=57.7
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEecCC-CCC-CHHHHHHHHhcc-CCCcEEEEe
Q 006044 40 DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHM-PDM-DGFKLLEHIGLE-MDLPVIMMS 113 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~ta---sng~eALelLre~k~~pDLVILDI~M-Pdm-DG~ELL~~Ir~~-~~IPVIILS 113 (663)
+-++.-...+..+|++.||+|... .+.++..+.+++.+ ||+|.+...+ +.. ...++++.++.. ++++||+ -
T Consensus 11 ~~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~--pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~-G 87 (121)
T PF02310_consen 11 EVHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAER--PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVV-G 87 (121)
T ss_dssp SSTSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTT--CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEE-E
T ss_pred cchhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCC--CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEE-E
Confidence 345677889999999999999765 34567777777765 9999999844 333 345666666654 4555554 4
Q ss_pred cCCCHHHHHHHHh--cCCCeEEe
Q 006044 114 ADGRVSAVMRGIR--HGACDYLI 134 (663)
Q Consensus 114 a~~d~e~v~kAl~--~GA~dYLl 134 (663)
+..-.......++ .|++..+.
T Consensus 88 G~~~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 88 GPHATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp ESSSGHHHHHHHHHHHTSEEEEE
T ss_pred CCchhcChHHHhccCcCcceecC
Confidence 4333333344454 45554443
No 96
>PRK15320 transcriptional activator SprB; Provisional
Probab=90.47 E-value=0.88 Score=46.64 Aligned_cols=167 Identities=15% Similarity=0.113 Sum_probs=97.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEE
Q 006044 35 RVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIM 111 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~--gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir-~~~~IPVII 111 (663)
.|+|-.|.-...-.++.++++. +..|.+|.+-...|..++.. ||.+++=.--|..--+ +-..++ ..++-||++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~~---p~a~lil~l~p~eh~~-lf~~l~~~l~~~~v~v 78 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDM---PDAGLILALNPHEHVY-LFHALLTRLQNRKVLV 78 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhhC---CCceEEEeeCchhHHH-HHHHHHHHcCCCceEE
Confidence 5788888888888899999875 56788888888888888764 6654443333433222 222333 346778888
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCC-----C----HHHHHHHHHHHHHHhhcccc--cccc--cCCccc----------
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPI-----R----EEELKNIWQHVVRKRWNENK--EHEN--SGSLEE---------- 168 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~-----s----~eeLk~~Iq~VLrkk~~~~k--e~e~--s~sl~~---------- 168 (663)
++..-......-.--.|..+|++|-- + ...|-++|-+...+-..... .... ....++
T Consensus 79 v~d~l~~~dr~vl~~~g~~~~~l~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T PRK15320 79 VADRLYYIDRCVLQYFGVMDYVLKDELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNINQYAW 158 (251)
T ss_pred EecceeehhhhhhhhhcchhHHHHHHHHHHhcccccccCCcHHHHHHhcCccccccceeeeccCCCChHHHhhhccceee
Confidence 88655443333333568888887631 0 11123344333321110000 0000 000000
Q ss_pred -ccccCCCchhHHHHhhhccCCcchhhhhhhccccccc
Q 006044 169 -TDHHKRGSDEIEYASSVNEGTEGTFKAQRKRISAKEE 205 (663)
Q Consensus 169 -~~~~klt~~Eie~lssv~eGse~~lka~~k~Is~Kee 205 (663)
.-...++.+|++++..+.+|.....++.+..++.|+.
T Consensus 159 ~~~~~~LSdREIEVL~LLAkG~SNKEIAekL~LS~KTV 196 (251)
T PRK15320 159 WNLPPGVTQAKYALLILLSSGHPAIELAKKFGLGTKTV 196 (251)
T ss_pred ecCCCCCCHHHHHHHHHHHcCCCHHHHHHHhccchhhH
Confidence 1123678899999999999999988888887776643
No 97
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=90.26 E-value=2.3 Score=51.01 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=71.8
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCC
Q 006044 34 LRVLVVDDDI-T-----CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMD 106 (663)
Q Consensus 34 iRVLIVDDD~-~-----~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir-~~~~ 106 (663)
|+||||+++. . -.+.|..-|++.+|.|..+.+..+++..++.. .....|++|+.- . ..++++.++ ...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK--Y-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch--h-hHHHHHHHHHhCCC
Confidence 5788887772 1 24566777788899999999999999998854 468899999532 2 245788886 4579
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCC-CHHHHHHHHHHHH
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVV 150 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~-s~eeLk~~Iq~VL 150 (663)
+||+++........+-...-.-..+|+..-- +.+.+...+....
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~ 121 (714)
T PRK15400 77 LPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTT 121 (714)
T ss_pred CCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHH
Confidence 9999987654333222222222344554332 3444434344443
No 98
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=89.96 E-value=0.88 Score=48.60 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=53.7
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe-cCCCHHHHHHHHhcCCCeEEeCC
Q 006044 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 58 y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS-a~~d~e~v~kAl~~GA~dYLlKP 136 (663)
.++..+.+..++-... ..-.+|++|-.+-. ..+... .-....+|++. ...+.+....+++.||.|||.+|
T Consensus 2 ~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~----~~~~~~-~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P 72 (322)
T TIGR03815 2 VELDVAPDPEAARRAW----ARAPLVLVDADMAE----ACAAAG-LPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLP 72 (322)
T ss_pred CceEEccCchhhhhcc----ccCCeEEECchhhh----HHHhcc-CCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeCC
Confidence 3455666655443322 23678999865411 111111 11223355444 46678899999999999999999
Q ss_pred CCHHHHHHHHHHH
Q 006044 137 IREEELKNIWQHV 149 (663)
Q Consensus 137 ~s~eeLk~~Iq~V 149 (663)
++.++|..++.++
T Consensus 73 ~~~~~l~~~l~~~ 85 (322)
T TIGR03815 73 EAEGWLVELLADL 85 (322)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999988776
No 99
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=89.68 E-value=1.8 Score=45.51 Aligned_cols=111 Identities=23% Similarity=0.266 Sum_probs=73.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH------hCCCeEE-EE-CCHHHHHHHHHHcCCCceEEEEecCCC---------CCCHH
Q 006044 33 GLRVLVVDDDITCLRILEQMLR------RCLYNVT-TC-SQAAVALDILRERKGCFDVVLSDVHMP---------DMDGF 95 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~------~~gy~V~-ta-sng~eALelLre~k~~pDLVILDI~MP---------dmDG~ 95 (663)
.+|+=|+.|+.....-+...++ +.||.|. .| .+...|-+ +.+.. +++| || +..-.
T Consensus 93 ~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~-l~~~G--~~~v-----mPlg~pIGsg~Gi~~~ 164 (248)
T cd04728 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKR-LEDAG--CAAV-----MPLGSPIGSGQGLLNP 164 (248)
T ss_pred eEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH-HHHcC--CCEe-----CCCCcCCCCCCCCCCH
Confidence 4677777666543333333222 3488876 44 45555544 44433 7887 66 12116
Q ss_pred HHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006044 96 KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (663)
Q Consensus 96 ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl-----KP~s~eeLk~~Iq~VLr 151 (663)
++++.|++..++|||+=.+-...+.+.++++.||+..+. |.-++..+...+..++.
T Consensus 165 ~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~ 225 (248)
T cd04728 165 YNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVE 225 (248)
T ss_pred HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHH
Confidence 888888776789999988888999999999999999865 44456666666666654
No 100
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=89.55 E-value=8.4 Score=37.01 Aligned_cols=109 Identities=13% Similarity=0.031 Sum_probs=74.2
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHhcc-CCCcEEEEe
Q 006044 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGLE-MDLPVIMMS 113 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~---tasng~eALelLre~k~~pDLVILDI~MPd-mD-G~ELL~~Ir~~-~~IPVIILS 113 (663)
|-|..=...+..+|+..||+|. .....++.++.+++.. +|+|-+...|.. +. --++.+.+++. ..-++|++-
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~--adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivG 89 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETK--ADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVG 89 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEec
Confidence 4445556778889999999986 4668889999888765 999998887753 22 22455556532 222445555
Q ss_pred cC-----CCHH-HHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 114 AD-----GRVS-AVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 114 a~-----~d~e-~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
+. .+.. ...++.++|++..+...-..+++.+.+++.+
T Consensus 90 G~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred CCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 42 2222 2456788998888887788888888887655
No 101
>PRK00208 thiG thiazole synthase; Reviewed
Probab=88.81 E-value=3.9 Score=43.16 Aligned_cols=110 Identities=23% Similarity=0.268 Sum_probs=73.7
Q ss_pred ccEEEEEeCCHHHH-------HHHHHHHHhCCCeEE-EE-CCHHHHHHHHHHcCCCceEEEEecCCC---------CCCH
Q 006044 33 GLRVLVVDDDITCL-------RILEQMLRRCLYNVT-TC-SQAAVALDILRERKGCFDVVLSDVHMP---------DMDG 94 (663)
Q Consensus 33 giRVLIVDDD~~~r-------e~L~~lL~~~gy~V~-ta-sng~eALelLre~k~~pDLVILDI~MP---------dmDG 94 (663)
.+|+=|+.|+.... +..+.++ +.||.|. .| .+...|-++ .+.. +|+| || +..-
T Consensus 93 ~iKlEVi~d~~~llpd~~~tv~aa~~L~-~~Gf~vlpyc~~d~~~ak~l-~~~G--~~~v-----mPlg~pIGsg~gi~~ 163 (250)
T PRK00208 93 WIKLEVIGDDKTLLPDPIETLKAAEILV-KEGFVVLPYCTDDPVLAKRL-EEAG--CAAV-----MPLGAPIGSGLGLLN 163 (250)
T ss_pred eEEEEEecCCCCCCcCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHH-HHcC--CCEe-----CCCCcCCCCCCCCCC
Confidence 46777776665332 3333333 3488876 44 455555444 4433 7887 66 1111
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006044 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (663)
Q Consensus 95 ~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl-----KP~s~eeLk~~Iq~VLr 151 (663)
.++++.|++..++|||+=.+-...+.+.++++.||++.++ |.-++..+...+...+.
T Consensus 164 ~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~ 225 (250)
T PRK00208 164 PYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVE 225 (250)
T ss_pred HHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHH
Confidence 6778888776789999988889999999999999999865 54456777777666664
No 102
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=85.10 E-value=11 Score=37.87 Aligned_cols=98 Identities=15% Similarity=0.079 Sum_probs=67.9
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhc
Q 006044 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGL 103 (663)
Q Consensus 33 giRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asng~eALelLre~k~~pDLVILDI~MPdm--DG~ELL~~Ir~ 103 (663)
..||++. |.|..=...+..+|+..||+|+. -...++.++.+++.+ ||+|-+-..|... +..++++.+++
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK--PDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHH
Confidence 4578888 77777788999999999999874 335778888888765 9999999877653 33456666764
Q ss_pred cC---CCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 104 EM---DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 104 ~~---~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
.. +++|++=-..-..+ -+-..||+.|-.-
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 43 45555433322332 3456799988763
No 103
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=83.89 E-value=18 Score=36.57 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=55.9
Q ss_pred HHHHHHh-CCCeE-EEECCHHHHHHHHHHcCCCceEEEEecC-------CCCCCHHHHHHHHhccCCCcEEEEecCCCHH
Q 006044 49 LEQMLRR-CLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVS 119 (663)
Q Consensus 49 L~~lL~~-~gy~V-~tasng~eALelLre~k~~pDLVILDI~-------MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e 119 (663)
+.+.+++ .+..+ ..+.+.+++..... . .+|+|.+... ......++++++++...++|||...+-.+.+
T Consensus 110 ~i~~~~~~~~i~vi~~v~t~ee~~~a~~-~--G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~ 186 (221)
T PRK01130 110 LVKRIKEYPGQLLMADCSTLEEGLAAQK-L--GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPE 186 (221)
T ss_pred HHHHHHhCCCCeEEEeCCCHHHHHHHHH-c--CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHH
Confidence 3333444 44443 45677777754443 2 3888865321 1223357888988766689999988888899
Q ss_pred HHHHHHhcCCCeEEe
Q 006044 120 AVMRGIRHGACDYLI 134 (663)
Q Consensus 120 ~v~kAl~~GA~dYLl 134 (663)
.+.++++.||+..+.
T Consensus 187 ~~~~~l~~GadgV~i 201 (221)
T PRK01130 187 QAKKALELGAHAVVV 201 (221)
T ss_pred HHHHHHHCCCCEEEE
Confidence 999999999998755
No 104
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=82.63 E-value=18 Score=35.84 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=49.3
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCCC--------CHHHHHHHHhccCC-CcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMPDM--------DGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MPdm--------DG~ELL~~Ir~~~~-IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
.+.+..++.+..+. .+|.|.+.--.|.. .|++.+++++...+ +||++.-+- +.+.+.++++.||+.+
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 45566676665542 38999887555532 36888888865544 898877665 5678889999999998
Q ss_pred Ee
Q 006044 133 LI 134 (663)
Q Consensus 133 Ll 134 (663)
..
T Consensus 186 ~~ 187 (212)
T PRK00043 186 AV 187 (212)
T ss_pred EE
Confidence 75
No 105
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=81.39 E-value=14 Score=37.77 Aligned_cols=103 Identities=13% Similarity=0.158 Sum_probs=69.5
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCC-C-CHHHHHHHHh
Q 006044 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (663)
Q Consensus 32 ~giRVLIV----DDD~~~re~L~~lL~~~gy~V~ta---sng~eALelLre~k~~pDLVILDI~MPd-m-DG~ELL~~Ir 102 (663)
..-+|++. |.|..=...+..+|+..||+|... ...++.++.+.+.+ ||+|.+-..|+. + +--++++.++
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~--~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHK--ADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEccchhccHHHHHHHHHHHH
Confidence 45578888 778888888999999999998743 35788888888776 999999988864 2 2345666676
Q ss_pred cc-CCCcEEEEecCCCHHHHHH---HHhcCCCeEEeCC
Q 006044 103 LE-MDLPVIMMSADGRVSAVMR---GIRHGACDYLIKP 136 (663)
Q Consensus 103 ~~-~~IPVIILSa~~d~e~v~k---Al~~GA~dYLlKP 136 (663)
+. .+++|++=-+--+.+.+.+ +-..||+.|-.-.
T Consensus 165 ~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 165 RRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred hcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 43 3556555433333333322 1246998887644
No 106
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=81.02 E-value=19 Score=36.39 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=52.0
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEecC-------CCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 60 VTTCSQAAVALDILRERKGCFDVVLSDVH-------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 60 V~tasng~eALelLre~k~~pDLVILDI~-------MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
+..+.+.+++...... .+|+|.+..+ ......+++++.++...++||+...+-.+.+.+.++++.||+..
T Consensus 127 iv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV 203 (219)
T cd04729 127 MADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAV 203 (219)
T ss_pred EEECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEE
Confidence 3456777777655543 3888765321 11223578888887666899999888888999999999999987
Q ss_pred EeC
Q 006044 133 LIK 135 (663)
Q Consensus 133 LlK 135 (663)
+.=
T Consensus 204 ~vG 206 (219)
T cd04729 204 VVG 206 (219)
T ss_pred EEc
Confidence 763
No 107
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=79.80 E-value=44 Score=29.72 Aligned_cols=37 Identities=14% Similarity=0.227 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006044 115 DGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (663)
Q Consensus 115 ~~d~e~v~kAl~~GA~dYLlKP~--s~eeLk~~Iq~VLr 151 (663)
..-.+.+.++++.|..=|+-||+ +.+++.++++.+-+
T Consensus 73 ~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~ 111 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKE 111 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHH
Confidence 34467788999999999999997 88888888876644
No 108
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=78.31 E-value=16 Score=32.48 Aligned_cols=90 Identities=16% Similarity=0.176 Sum_probs=56.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006044 35 RVLVVDDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~ta---sng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVII 111 (663)
+||||-........++..+++.|+..... .........+...-...|+||+=.+.-.=+-...+++..+..++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999998888899999999999988777 222222222332222379998866554444455555555667889987
Q ss_pred EecCCCHHHHHHHH
Q 006044 112 MSADGRVSAVMRGI 125 (663)
Q Consensus 112 LSa~~d~e~v~kAl 125 (663)
.-... ...+.+++
T Consensus 81 ~~~~~-~~~l~~~l 93 (97)
T PF10087_consen 81 SRSRG-VSSLERAL 93 (97)
T ss_pred ECCCC-HHHHHHHH
Confidence 65333 33344443
No 109
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=77.84 E-value=21 Score=32.88 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEecCCCCC-CHHHHHHHHhc-cCCCcEEEEecCCCHH
Q 006044 44 TCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGL-EMDLPVIMMSADGRVS 119 (663)
Q Consensus 44 ~~re~L~~lL~~~gy~V~t--asng~eALelLre~k~~pDLVILDI~MPdm-DG~ELL~~Ir~-~~~IPVIILSa~~d~e 119 (663)
.-...+..+|++.++.+.. ....++.++.+... ..||+|.+....... ...++++.+|+ .++++||+=-.+...
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~- 80 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATF- 80 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhh-
Confidence 4456788889888877643 34556666766552 249999999855544 35667778875 456666653333221
Q ss_pred HHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 120 AVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 120 ~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
.....+..-..||+.+---...+.+.++++.
T Consensus 81 ~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 81 FPEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred CHHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 1222244556688888766666666666643
No 110
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=77.66 E-value=49 Score=31.64 Aligned_cols=105 Identities=16% Similarity=0.060 Sum_probs=70.9
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEecCCCC-CCH-HHHHHHHhcc--CCCcEEEE
Q 006044 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGLE--MDLPVIMM 112 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~---tasng~eALelLre~k~~pDLVILDI~MPd-mDG-~ELL~~Ir~~--~~IPVIIL 112 (663)
|-|..=...+..+|+..||+|. .....++.++.+.+.. +|+|-+...|.. +.. -++.+.+++. .+++|+ +
T Consensus 10 D~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~--adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vi-v 86 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETD--ADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLY-V 86 (128)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEE-E
Confidence 3445556788889999999986 4667888888888765 999998887754 333 3455666543 254444 3
Q ss_pred ecC-----CC-HHHHHHHHhcCCCeEEeCCCCHHHHHHHHH
Q 006044 113 SAD-----GR-VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (663)
Q Consensus 113 Sa~-----~d-~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq 147 (663)
-+. .+ .+...++.++|++..+...-.++++...++
T Consensus 87 GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 87 GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 332 12 334566788999988887777777766553
No 111
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=75.39 E-value=13 Score=38.01 Aligned_cols=84 Identities=19% Similarity=0.242 Sum_probs=56.7
Q ss_pred HHHHHHHcCCC-----CCCccccccccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHH
Q 006044 4 LQRIVQSSGGS-----GYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRE 75 (663)
Q Consensus 4 ~~~~v~~mGGs-----g~gs~~~~dl~~~d~fP~giRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasng~eALelLre 75 (663)
++.|+.+++-. |++..+. -+.+...+|.+-+|.-||-++...+..++++++.++ .|. ...++.+.+..+..
T Consensus 37 L~~l~~~~~~k~vLEIGt~~GyS-al~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~ 115 (205)
T PF01596_consen 37 LQMLVRLTRPKRVLEIGTFTGYS-ALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAN 115 (205)
T ss_dssp HHHHHHHHT-SEEEEESTTTSHH-HHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEeccccccH-HHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHh
Confidence 45566666552 3333332 111233456667999999999999999999998875 343 56788888887765
Q ss_pred cC--CCceEEEEecC
Q 006044 76 RK--GCFDVVLSDVH 88 (663)
Q Consensus 76 ~k--~~pDLVILDI~ 88 (663)
.. ..||+|++|..
T Consensus 116 ~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 116 DGEEGQFDFVFIDAD 130 (205)
T ss_dssp TTTTTSEEEEEEEST
T ss_pred ccCCCceeEEEEccc
Confidence 42 36999999984
No 112
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=74.54 E-value=31 Score=34.80 Aligned_cols=93 Identities=9% Similarity=0.160 Sum_probs=65.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006044 35 RVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~g--y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIIL 112 (663)
+++|+.+++..++.+++++..+| |+|....+.+++++.++.....+.|+..+....+ .++-++..-.. .-|++++
T Consensus 33 ~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~-~~p~LIv 109 (176)
T PRK03958 33 KIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK-GEPLLIV 109 (176)
T ss_pred eEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc-CCcEEEE
Confidence 68999999999999999999885 7899999999999999743335899999998866 55544432222 4566665
Q ss_pred ec-CCCHHHHHHHHhcCCCeEEeC
Q 006044 113 SA-DGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 113 Sa-~~d~e~v~kAl~~GA~dYLlK 135 (663)
-+ ..-+..+ ++ .+||.+=
T Consensus 110 vGg~gvp~ev---ye--~aDynlg 128 (176)
T PRK03958 110 VGAEKVPREV---YE--LADWNVA 128 (176)
T ss_pred EcCCCCCHHH---Hh--hCCEEec
Confidence 54 3333333 22 3567663
No 113
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=73.26 E-value=40 Score=34.11 Aligned_cols=68 Identities=15% Similarity=0.299 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 65 QAAVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 65 ng~eALelLre~k~~pD-LVILDI~MPdm-DG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+..+..+.+.+.. .| ++++|+.--++ .| +++++++++..++|||+-.+-.+.+.+.++++.||++.+.
T Consensus 146 ~~~~~~~~~~~~g--~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEELG--LEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhCC--CCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 3345555555543 66 78888865432 12 6888888777789999988888899999999999998875
No 114
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=72.33 E-value=29 Score=34.89 Aligned_cols=97 Identities=14% Similarity=0.081 Sum_probs=63.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCCC-CH-HHHHHHHhcc
Q 006044 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM-DG-FKLLEHIGLE 104 (663)
Q Consensus 34 iRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asng~eALelLre~k~~pDLVILDI~MPdm-DG-~ELL~~Ir~~ 104 (663)
-+|++. |.|..=...+..+|+..||+|+. -...++.++.+++.+ ||+|-+-..|... .. -++++.+++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~--pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEK--PLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEccccccCHHHHHHHHHHHHHc
Confidence 356655 55566677888889999999873 446678888888766 9999999887642 22 3455666644
Q ss_pred --C-CCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 105 --M-DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 105 --~-~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
+ +++|+ +-+..-.. .-+-+.||+.|-.-
T Consensus 163 ~~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~d 193 (197)
T TIGR02370 163 GYRDSVKFM-VGGAPVTQ--DWADKIGADVYGEN 193 (197)
T ss_pred CCCCCCEEE-EEChhcCH--HHHHHhCCcEEeCC
Confidence 2 34544 44433222 23456799988653
No 115
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=72.15 E-value=5.7 Score=40.42 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=53.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecC--CCCCC--HHHHHHHHhccCCCc
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMD--GFKLLEHIGLEMDLP 108 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~--MPdmD--G~ELL~~Ir~~~~IP 108 (663)
+++||+||....+--.|.++|.+.+++|++..+....++.++..+ ||.|++.-- -|..- -.+++++. ..++|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~--pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALK--PDAIVISPGPGTPKDAGISLELIRRF--AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhhcC--CCEEEEcCCCCChHHcchHHHHHHHh--cCCCC
Confidence 468999999999999999999999988887776643344555444 899998642 22212 24445544 35678
Q ss_pred EEEEe
Q 006044 109 VIMMS 113 (663)
Q Consensus 109 VIILS 113 (663)
|+-+-
T Consensus 77 iLGVC 81 (191)
T COG0512 77 ILGVC 81 (191)
T ss_pred EEEEC
Confidence 87653
No 116
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=71.88 E-value=36 Score=35.89 Aligned_cols=100 Identities=12% Similarity=0.114 Sum_probs=68.3
Q ss_pred HHHHHHHhCCCeE--EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHH
Q 006044 48 ILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR 123 (663)
Q Consensus 48 ~L~~lL~~~gy~V--~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~--~~~IPVIILSa~~d~e~v~k 123 (663)
.|++.|..-...+ ........+.+.+.... ||.|++|..=...|--++...++. ...++.++=....+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLAG--FDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 4666666533322 22333446666666544 999999998777776666666652 34566666667778899999
Q ss_pred HHhcCCCeEEeCCC-CHHHHHHHHHHH
Q 006044 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (663)
Q Consensus 124 Al~~GA~dYLlKP~-s~eeLk~~Iq~V 149 (663)
+++.||.+.+.-=+ +.++.+.+++.+
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~ 113 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAST 113 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHc
Confidence 99999999877544 577777776654
No 117
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=71.51 E-value=46 Score=34.96 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=67.4
Q ss_pred HHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHHH
Q 006044 49 LEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (663)
Q Consensus 49 L~~lL~~~gy~--V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~--~~~IPVIILSa~~d~e~v~kA 124 (663)
|++.|..-... +........+.+++.... ||.|++|..=..+|--++...++. ...++.++=....+...+.++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G--~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~ 80 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITTEVLGLAG--FDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRL 80 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHHHHHHhcC--CCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHH
Confidence 44555543332 223334456667666543 999999998877776666666652 345666666677888999999
Q ss_pred HhcCCCeEEeCCC-CHHHHHHHHHHH
Q 006044 125 IRHGACDYLIKPI-REEELKNIWQHV 149 (663)
Q Consensus 125 l~~GA~dYLlKP~-s~eeLk~~Iq~V 149 (663)
++.||.+.+.-=+ +.++.+++++.+
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~ 106 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAAT 106 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999999887554 577777776654
No 118
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.88 E-value=22 Score=40.51 Aligned_cols=113 Identities=10% Similarity=0.118 Sum_probs=59.3
Q ss_pred cCCCCCCccccccccCCC-CCCCccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe
Q 006044 11 SGGSGYGSSRAADVAVPD-QFPAGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD 86 (663)
Q Consensus 11 mGGsg~gs~~~~dl~~~d-~fP~giRVLIVDDD~~~---re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILD 86 (663)
+|.+|.|..+..--.... ....+.+|++++-|+.- ...++.+.+..+..+..+.+..++.+.++.. .+|+||+|
T Consensus 229 vGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~--~~D~VLID 306 (432)
T PRK12724 229 VGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARD--GSELILID 306 (432)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhC--CCCEEEEe
Confidence 344466655533221111 12346789999988721 2233444344455555566666777777643 49999999
Q ss_pred c--CCC-CCCHHHHHHHH-hc----cCCCcEEEEecCCCHHHHHHHH
Q 006044 87 V--HMP-DMDGFKLLEHI-GL----EMDLPVIMMSADGRVSAVMRGI 125 (663)
Q Consensus 87 I--~MP-dmDG~ELL~~I-r~----~~~IPVIILSa~~d~e~v~kAl 125 (663)
. .++ +.+-++-+..+ +. .+.-.++++++....+.+.+++
T Consensus 307 TaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 307 TAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred CCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 6 222 12233333332 21 1223567778777665555444
No 119
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=70.68 E-value=1.1e+02 Score=30.05 Aligned_cols=115 Identities=16% Similarity=0.051 Sum_probs=73.9
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHH----HH
Q 006044 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL----EH 100 (663)
Q Consensus 32 ~giRVLIV----DDD~~~re~L~~lL~~~gy~V~---tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL----~~ 100 (663)
...|||+. |-+..=.+.+.+.|+..||+|. ...+.+|+....-+.. .|+|.+... .....+++ +.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~d--v~vIgvSsl--~g~h~~l~~~lve~ 86 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEED--VDVIGVSSL--DGGHLTLVPGLVEA 86 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhcC--CCEEEEEec--cchHHHHHHHHHHH
Confidence 34566665 7777788899999999999986 5778899998886544 888776543 22233444 44
Q ss_pred HhccCCCcEE-EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 101 IGLEMDLPVI-MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 101 Ir~~~~IPVI-ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
+++.---.|+ +.-+.-..+...+..++|++.++.--....+...-+.+.+
T Consensus 87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 4432212233 3444444455566678999999887676666655554433
No 120
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=70.49 E-value=45 Score=35.56 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=67.7
Q ss_pred HHHHHHHhCCCeE--EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHH
Q 006044 48 ILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMR 123 (663)
Q Consensus 48 ~L~~lL~~~gy~V--~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir--~~~~IPVIILSa~~d~e~v~k 123 (663)
.|++.|..-...+ ........+.+.+.... ||.|++|..=...|--++...++ ....+..++=....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~G--fD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATSG--YDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHcC--CCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 3566666533322 23333456666666543 99999999877777666666664 234555666666778889999
Q ss_pred HHhcCCCeEEeCCC-CHHHHHHHHHHH
Q 006044 124 GIRHGACDYLIKPI-REEELKNIWQHV 149 (663)
Q Consensus 124 Al~~GA~dYLlKP~-s~eeLk~~Iq~V 149 (663)
+++.||.+.+.--+ +.++.+++++.+
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a~ 112 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHhc
Confidence 99999999988665 577777766654
No 121
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=68.85 E-value=20 Score=37.18 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=42.6
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 006044 93 DGFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (663)
Q Consensus 93 DG~ELL~~Ir~~~~IPVIILSa~~d------~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~V 149 (663)
.++++++.+|...++|+++|+-.+. ...+.++.++|+++.+.-.+..+++...++.+
T Consensus 63 ~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~ 125 (242)
T cd04724 63 DVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAA 125 (242)
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 3566777777656889988876554 56678888999999999767777776666655
No 122
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=68.65 E-value=69 Score=32.32 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=49.4
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MPd-------mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+.+.+++.. +.+.. .|.|+++-.-++ ...+++++++++..++||++.-+-...+.+.+++..||++...
T Consensus 108 ~v~~~~~~~~-~~~~g--ad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 108 TVTSVEEARK-AEAAG--ADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred eCCCHHHHHH-HHHcC--CCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 4445555544 33333 788887643111 2457788888766689999888877778899999999998766
Q ss_pred C
Q 006044 135 K 135 (663)
Q Consensus 135 K 135 (663)
-
T Consensus 185 g 185 (236)
T cd04730 185 G 185 (236)
T ss_pred c
Confidence 4
No 123
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=68.51 E-value=60 Score=39.34 Aligned_cols=116 Identities=10% Similarity=-0.034 Sum_probs=75.1
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhcc
Q 006044 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLE 104 (663)
Q Consensus 34 iRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asng~eALelLre~k~~pDLVILDI~MPdm--DG~ELL~~Ir~~ 104 (663)
.+|+|. |.+..-...+..+|...||+|.. ..+.+++.+...+.. +|+|++-..+... ..-++++.|++.
T Consensus 583 pkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~~--a~ivvlcs~d~~~~e~~~~l~~~Lk~~ 660 (714)
T PRK09426 583 PRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEND--VHVVGVSSLAAGHKTLVPALIEALKKL 660 (714)
T ss_pred ceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHcC--CCEEEEeccchhhHHHHHHHHHHHHhc
Confidence 356654 44455556677888888999853 346788888887754 8988876655432 234566667654
Q ss_pred CCCcE-EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 105 MDLPV-IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 105 ~~IPV-IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
-.-.| |++.+.--.+......+.|+++|+..-.+..++...+++.+.
T Consensus 661 G~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 661 GREDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 21123 445544233334566789999999988888887777666554
No 124
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=68.46 E-value=21 Score=38.27 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=58.0
Q ss_pred EEEEeCCHHHHH---HHHHHHHh----C--CCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 006044 36 VLVVDDDITCLR---ILEQMLRR----C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (663)
Q Consensus 36 VLIVDDD~~~re---~L~~lL~~----~--gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~ 106 (663)
|||=|+|..+.- .++..+.. . ......+.+.++|.+.+.. .+|+|++| +|+-.+-.+..+.++....
T Consensus 159 ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~~ 234 (277)
T TIGR01334 159 LLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFDH 234 (277)
T ss_pred heehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccCC
Confidence 677666654432 34444432 1 2234578899999998864 38999999 3433333334444432223
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
-.+|-.|+--+.+.+.+..+.|++-+
T Consensus 235 ~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 235 IPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred CEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 33566888888888888888898753
No 125
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=67.00 E-value=1.1e+02 Score=32.82 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=75.0
Q ss_pred ccEEEEEeCC-------HHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEecCCCCCCH-----HHHH
Q 006044 33 GLRVLVVDDD-------ITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLL 98 (663)
Q Consensus 33 giRVLIVDDD-------~~~re~L~~lL~~~gy~V~tas--ng~eALelLre~k~~pDLVILDI~MPdmDG-----~ELL 98 (663)
.+|+=|+-|+ ....+.-+.++ +.||.|..+. |..-|-++ .+.. =.+++-+--|-.+| -..+
T Consensus 107 wIKLEVi~D~~~LlPD~~etl~Aae~Lv-~eGF~VlPY~~~D~v~a~rL-ed~G---c~aVMPlgsPIGSg~Gl~n~~~l 181 (267)
T CHL00162 107 FVKLEVISDPKYLLPDPIGTLKAAEFLV-KKGFTVLPYINADPMLAKHL-EDIG---CATVMPLGSPIGSGQGLQNLLNL 181 (267)
T ss_pred eEEEEEeCCCcccCCChHHHHHHHHHHH-HCCCEEeecCCCCHHHHHHH-HHcC---CeEEeeccCcccCCCCCCCHHHH
Confidence 4555555333 23344444444 5699997554 44344333 3321 23445555553332 3567
Q ss_pred HHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEE-----eCCCCHHHHHHHHHHHHH
Q 006044 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-----IKPIREEELKNIWQHVVR 151 (663)
Q Consensus 99 ~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYL-----lKP~s~eeLk~~Iq~VLr 151 (663)
+.|++.+++|||+=.+-...+.+.++++.|+++.+ .|--++.++..++++++.
T Consensus 182 ~~i~e~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~ 239 (267)
T CHL00162 182 QIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQ 239 (267)
T ss_pred HHHHHcCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHH
Confidence 77788889999999999999999999999999875 466788889888888775
No 126
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.44 E-value=28 Score=37.57 Aligned_cols=93 Identities=13% Similarity=0.090 Sum_probs=55.9
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006044 36 VLVVDDDITCLRILEQMLRR----CL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~----~g--y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPV 109 (663)
|||=|.|....-.+...+++ .. .....+.+.+++.+.+.. ..|+|.+| +|.-.+--+.++.++....-..
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ 248 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARAPTVL 248 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccCCCEE
Confidence 66655554333233333332 22 245688999999999864 38999999 3331111122222232333346
Q ss_pred EEEecCCCHHHHHHHHhcCCCeE
Q 006044 110 IMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dY 132 (663)
|..|+--+.+.+.+..+.|++.+
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEE
Confidence 77888888999999889998754
No 127
>smart00426 TEA TEA domain.
Probab=64.16 E-value=5.3 Score=34.29 Aligned_cols=47 Identities=28% Similarity=0.333 Sum_probs=29.9
Q ss_pred cccHHHHHHHHHHHHHhccCcccHHHHH-------------HHh-cCCCC--CHHHHHHHHHH
Q 006044 224 VWSVELHQQFVSAVNQLGIDKAVPKRIL-------------ELM-NVPGL--TRENVASHLQK 270 (663)
Q Consensus 224 vWTvELHrkFv~AVnqLGidKAvPKkIL-------------ElM-nVpgL--TrenVASHLQK 270 (663)
+|..+|...|++|+..+--...-+-++. +++ ..+|. |+.+|+||+|.
T Consensus 5 vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv 67 (68)
T smart00426 5 VWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV 67 (68)
T ss_pred cCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence 7999999999999998742221111222 222 23554 56888888874
No 128
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=64.15 E-value=33 Score=32.87 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=69.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHH-----HHHHHhccCC
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-----LLEHIGLEMD 106 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~E-----LL~~Ir~~~~ 106 (663)
.|-+.+.||-+.........+|..-+.+|+.-.. +..+-... ||++|+.+-.+-.+-.. +.+.+.. -+
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~lp~~h--YD~~Ll~vavtfr~n~tm~~~~l~~Al~m-td 82 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSALPPAH--YDMMLLGVAVTFRENLTMQHERLAKALSM-TD 82 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEeccc----ccccChhh--hceeeecccccccCCchHHHHHHHHHHhh-hc
Confidence 5678999999999999999999988888764222 22232223 99999999776544333 3333321 22
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHH
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~ 144 (663)
- ||+--.....-.+.+....|+.+.|+||++...|..
T Consensus 83 ~-vilalPs~~qv~AeqLkQ~g~~~CllKPls~~rLlp 119 (140)
T COG4999 83 F-VILALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLP 119 (140)
T ss_pred c-eEEecCcHHHHhHHHHhhcchHhHhhCcchhhhhHH
Confidence 2 333222333344567788999999999999888765
No 129
>PLN02591 tryptophan synthase
Probab=64.07 E-value=23 Score=37.29 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=45.4
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 93 DGFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 93 DG~ELL~~Ir~~~~IPVIILSa~~d------~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
+.+++++++|...++|+|+|+=++. .....++-++|+++.|+-.+..+|.......+.
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~ 128 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAA 128 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 4678888888667899998885543 344778889999999999999888887776653
No 130
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=63.31 E-value=28 Score=34.73 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCH-HHHHHHHh
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIG 102 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy---~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG-~ELL~~Ir 102 (663)
-+|..||-++.....+++-++..+. ......+...++..+......+|+|++|-=-..... .++++.|.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHH
Confidence 3799999999999999999987753 234677888888777544456999999941112222 45666664
No 131
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=63.17 E-value=6.8 Score=37.58 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006044 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (663)
Q Consensus 66 g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~ 115 (663)
..++++.++.. .+|+||+|. ++..- .....+ ...+..+|+++..
T Consensus 80 ~~~~~~~~~~~--~~D~iiIDt--aG~~~-~~~~~~-~~Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDAA--GFDVIIVET--VGVGQ-SEVDIA-SMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHhc--CCCEEEEEC--CccCh-hhhhHH-HhCCEEEEEECCC
Confidence 35566666553 499999998 66542 222322 3355667776665
No 132
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=62.82 E-value=52 Score=31.56 Aligned_cols=70 Identities=19% Similarity=0.148 Sum_probs=48.9
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCC--------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MPd--------mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
.+.+..++.+.... .+|.|+++-..|. ..|++.++++++..++||++..+- ..+.+.++++.|++.+.
T Consensus 101 ~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 101 STHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGI-TPENAAEVLAAGADGVA 176 (196)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence 34556666555442 3899988654432 356788888876678898888765 46778899999999875
Q ss_pred eC
Q 006044 134 IK 135 (663)
Q Consensus 134 lK 135 (663)
.=
T Consensus 177 ~g 178 (196)
T cd00564 177 VI 178 (196)
T ss_pred Ee
Confidence 53
No 133
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=62.73 E-value=23 Score=37.47 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=44.1
Q ss_pred CHHHHHHHHh-ccCCCcEEEEecCC------CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 006044 93 DGFKLLEHIG-LEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (663)
Q Consensus 93 DG~ELL~~Ir-~~~~IPVIILSa~~------d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~V 149 (663)
+.+++++++| ...++|+|+|+=++ -.....++.++|+++.|+-.+..++....+..+
T Consensus 75 ~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~ 138 (258)
T PRK13111 75 DVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAA 138 (258)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHH
Confidence 3577788887 55789999888443 345578889999999999878888887777665
No 134
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=62.56 E-value=65 Score=34.82 Aligned_cols=82 Identities=15% Similarity=0.146 Sum_probs=57.8
Q ss_pred HHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEecCC-----CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHH
Q 006044 50 EQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (663)
Q Consensus 50 ~~lL~~~gy~V-~tasng~eALelLre~k~~pDLVILDI~M-----PdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~k 123 (663)
-+.++..+..| ..+.+.++|..+.+. ..|.|++.-.- ....-++++.+++...++|||+--+-.+.+.+.+
T Consensus 102 i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~ 178 (307)
T TIGR03151 102 IPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAA 178 (307)
T ss_pred HHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHH
Confidence 33444445544 357788887666543 38988874421 1223588888887666899998888888888999
Q ss_pred HHhcCCCeEEe
Q 006044 124 GIRHGACDYLI 134 (663)
Q Consensus 124 Al~~GA~dYLl 134 (663)
++..||++...
T Consensus 179 al~~GA~gV~i 189 (307)
T TIGR03151 179 AFALGAEAVQM 189 (307)
T ss_pred HHHcCCCEeec
Confidence 99999998665
No 135
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=62.42 E-value=47 Score=35.86 Aligned_cols=89 Identities=12% Similarity=0.083 Sum_probs=62.0
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEec---------------------------------CC--CCCCHHHHHHHHhccC
Q 006044 61 TTCSQAAVALDILRERKGCFDVVLSDV---------------------------------HM--PDMDGFKLLEHIGLEM 105 (663)
Q Consensus 61 ~tasng~eALelLre~k~~pDLVILDI---------------------------------~M--PdmDG~ELL~~Ir~~~ 105 (663)
.-|++.+||+...+.- +|+|=+=+ .. ....++++++++.+..
T Consensus 117 AD~stleEal~a~~~G---ad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~ 193 (283)
T cd04727 117 CGARNLGEALRRISEG---AAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG 193 (283)
T ss_pred ccCCCHHHHHHHHHCC---CCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc
Confidence 4678888888887653 78877654 01 1234789999998767
Q ss_pred CCcEE--EEecCCCHHHHHHHHhcCCCeEEeC-----CCCHHHHHHHHHHHHHH
Q 006044 106 DLPVI--MMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVRK 152 (663)
Q Consensus 106 ~IPVI--ILSa~~d~e~v~kAl~~GA~dYLlK-----P~s~eeLk~~Iq~VLrk 152 (663)
.+||| ....-...+.+.++++.||+.+++= .-++.+....+...+.+
T Consensus 194 ~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 194 RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 79997 6666668999999999999997653 33455555555554443
No 136
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=62.21 E-value=70 Score=32.58 Aligned_cols=100 Identities=24% Similarity=0.337 Sum_probs=56.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--C----Ce---------EEEECCHHHHHHHHHHc-CCCceEEEEecC-CCCCCHHHH
Q 006044 35 RVLVVDDDITCLRILEQMLRRC--L----YN---------VTTCSQAAVALDILRER-KGCFDVVLSDVH-MPDMDGFKL 97 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~--g----y~---------V~tasng~eALelLre~-k~~pDLVILDI~-MPdmDG~EL 97 (663)
+-.||.--+..++.+++++.-+ | |+ |..+.+.++|++.+++. ...|-+|-+|.. -|+.=.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 5688888888899998888743 2 22 78999999999998863 235899999998 455556666
Q ss_pred HHHHhccCCCcEEEEe--cCCCHHHHHHHHhcCCCeEEeCCCCH
Q 006044 98 LEHIGLEMDLPVIMMS--ADGRVSAVMRGIRHGACDYLIKPIRE 139 (663)
Q Consensus 98 L~~Ir~~~~IPVIILS--a~~d~e~v~kAl~~GA~dYLlKP~s~ 139 (663)
+++.-...+-|++++- +..-.+.++ ..+||++.|+.-
T Consensus 124 lr~~l~~~~~P~LllFGTGwGL~~ev~-----~~~D~iLePI~g 162 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWGLAPEVM-----EQCDYILEPIRG 162 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT---HHHH-----TT-SEEB--TTT
T ss_pred HHHHHhccCCeEEEEecCCCCCCHHHH-----HhcCeeEccccc
Confidence 6655344566766664 444444443 358899999853
No 137
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=62.13 E-value=86 Score=32.86 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=66.3
Q ss_pred HHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHHH
Q 006044 49 LEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRG 124 (663)
Q Consensus 49 L~~lL~~~g--y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~--~~~IPVIILSa~~d~e~v~kA 124 (663)
+++.|+.-. +.+..........+.+.... +|.|++|+.=...|--++...++. .....+++=....+...+.++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g--~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~ 80 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEICAGAG--FDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQL 80 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHHHHhcC--CCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHH
Confidence 445555432 22333444456667666544 999999998766777777776653 234556665566677789999
Q ss_pred HhcCCCeEEe-CCCCHHHHHHHHHHH
Q 006044 125 IRHGACDYLI-KPIREEELKNIWQHV 149 (663)
Q Consensus 125 l~~GA~dYLl-KP~s~eeLk~~Iq~V 149 (663)
++.||++.+. |--+.++++++++.+
T Consensus 81 Ld~Ga~gIivP~v~s~e~a~~~v~~~ 106 (249)
T TIGR02311 81 LDIGAQTLLVPMIETAEQAEAAVAAT 106 (249)
T ss_pred hCCCCCEEEecCcCCHHHHHHHHHHc
Confidence 9999998755 446788888777664
No 138
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=61.44 E-value=1.6e+02 Score=29.52 Aligned_cols=76 Identities=14% Similarity=0.010 Sum_probs=50.6
Q ss_pred CCCeE-EEECCHHHHHHHHHHcCCCceEEEEe-cCC-CCCCHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHhcCCC
Q 006044 56 CLYNV-TTCSQAAVALDILRERKGCFDVVLSD-VHM-PDMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGAC 130 (663)
Q Consensus 56 ~gy~V-~tasng~eALelLre~k~~pDLVILD-I~M-PdmDG~ELL~~Ir~~--~~IPVIILSa~~d~e~v~kAl~~GA~ 130 (663)
.+..+ ..+.+.+++.+..+ .. +|.+.+- ... ....+++++++++.. .++|||...+-...+.+.+++++||+
T Consensus 120 ~g~~~~v~v~~~~e~~~~~~-~g--~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~ 196 (217)
T cd00331 120 LGMEVLVEVHDEEELERALA-LG--AKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGAD 196 (217)
T ss_pred cCCeEEEEECCHHHHHHHHH-cC--CCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCC
Confidence 45543 35667777655554 32 7776544 110 011245777887644 47899999999998999999999999
Q ss_pred eEEe
Q 006044 131 DYLI 134 (663)
Q Consensus 131 dYLl 134 (663)
+.++
T Consensus 197 gviv 200 (217)
T cd00331 197 AVLI 200 (217)
T ss_pred EEEE
Confidence 9764
No 139
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=61.33 E-value=30 Score=36.42 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=44.4
Q ss_pred CHHHHHHHHhcc-CCCcEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 006044 93 DGFKLLEHIGLE-MDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (663)
Q Consensus 93 DG~ELL~~Ir~~-~~IPVIILSa~~d------~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~V 149 (663)
+.+++++.+++. .++|+++|+-++. ...+.++.++|+++.+.-....++....++.+
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~ 136 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAA 136 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHH
Confidence 456778888755 6899888877665 57788899999999999888888877666554
No 140
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.04 E-value=39 Score=36.42 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=60.1
Q ss_pred cEEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------------HHHcCCCceEEEEecCCCCCCHH
Q 006044 34 LRVLVV--DDDITCL---RILEQMLRRCLYNVTTCSQAAVALDI-------------LRERKGCFDVVLSDVHMPDMDGF 95 (663)
Q Consensus 34 iRVLIV--DDD~~~r---e~L~~lL~~~gy~V~tasng~eALel-------------Lre~k~~pDLVILDI~MPdmDG~ 95 (663)
|+|.|+ -+.+... ..+..+|.+.++.+.......+.+.. .......+|+||+ -+.||-
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 567777 2334443 45555666667777654432222210 0111123688777 367873
Q ss_pred HHHHHHhc--cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 96 KLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 96 ELL~~Ir~--~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+|+..+. ..++||+-+- .|-.+||. .++.+++..++++++++.+
T Consensus 77 -~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 77 -FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGDY 122 (292)
T ss_pred -HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 4454442 3578988654 36667877 5788999999999987654
No 141
>PRK10742 putative methyltransferase; Provisional
Probab=59.51 E-value=23 Score=37.50 Aligned_cols=57 Identities=21% Similarity=0.177 Sum_probs=41.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC------C----CeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCC
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC------L----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDM 92 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~------g----y~V~-tasng~eALelLre~k~~pDLVILDI~MPdm 92 (663)
|-+|..||.++.+...|+.-|++. + -.+. ...+..+.|.. ....||+|++|-+-|.-
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCC
Confidence 567999999999999999998873 1 1222 34555555544 33359999999998874
No 142
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=57.70 E-value=1.5e+02 Score=32.78 Aligned_cols=114 Identities=15% Similarity=0.151 Sum_probs=72.6
Q ss_pred ccEEEEEeCCHHH-------HHHHHHHHHhCCCeE--EEECCHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHH
Q 006044 33 GLRVLVVDDDITC-------LRILEQMLRRCLYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLL 98 (663)
Q Consensus 33 giRVLIVDDD~~~-------re~L~~lL~~~gy~V--~tasng~eALelLre~k~~pDLVILDI~MP-----dmDG~ELL 98 (663)
.+|+=|+.|+... .+..+.++ +.|+.| .++.+...|-++.. .. + +.++-+--| +..--+.+
T Consensus 167 ~iKlEvi~e~~~llpd~~~~v~aa~~L~-~~Gf~v~~yc~~d~~~a~~l~~-~g--~-~avmPl~~pIGsg~gv~~p~~i 241 (326)
T PRK11840 167 LVKLEVLGDAKTLYPDMVETLKATEILV-KEGFQVMVYCSDDPIAAKRLED-AG--A-VAVMPLGAPIGSGLGIQNPYTI 241 (326)
T ss_pred eEEEEEcCCCCCcccCHHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHh-cC--C-EEEeeccccccCCCCCCCHHHH
Confidence 3566566555443 33333333 338877 34555666555443 32 4 333332111 12234667
Q ss_pred HHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006044 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (663)
Q Consensus 99 ~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl-----KP~s~eeLk~~Iq~VLr 151 (663)
+.+.+.+++|||+=.+-...+.+.+|+++||++.|+ |--++-.+.+++++++.
T Consensus 242 ~~~~e~~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 242 RLIVEGATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVE 299 (326)
T ss_pred HHHHHcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHH
Confidence 777666889999988889999999999999999764 55677888888887765
No 143
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=57.26 E-value=51 Score=33.29 Aligned_cols=67 Identities=10% Similarity=0.188 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcC-CCeEEe
Q 006044 66 AAVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI 134 (663)
Q Consensus 66 g~eALelLre~k~~pD-LVILDI~MPdm-DG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~G-A~dYLl 134 (663)
..+..+.+.+.. ++ ++++|+..-++ .| ++++++++...++|||.-..-.+.+.+.++++.| |++.+.
T Consensus 148 ~~e~~~~~~~~g--~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFEDAG--VKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHhcC--CCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 355555555433 56 88888865332 34 6888888766679999988888999999999988 888765
No 144
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=56.83 E-value=1.4e+02 Score=31.55 Aligned_cols=59 Identities=8% Similarity=0.134 Sum_probs=44.5
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCe------EEeCCCCHHHHHHHHHHHHHHh
Q 006044 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD------YLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 95 ~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~d------YLlKP~s~eeLk~~Iq~VLrkk 153 (663)
++.+.++++..++|||..-.-.+.+.+.+++..||+. ++.+|.-..++++-+.+.+.++
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~ 287 (300)
T TIGR01037 223 LRMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAE 287 (300)
T ss_pred HHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHc
Confidence 3666777766679999988888999999999999875 5667865666666666655543
No 145
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.46 E-value=48 Score=37.81 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=43.2
Q ss_pred CCCCccccccccCCCCCCCccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcC--CCceEEEEec
Q 006044 14 SGYGSSRAADVAVPDQFPAGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDV 87 (663)
Q Consensus 14 sg~gs~~~~dl~~~d~fP~giRVLIVDDD~~---~re~L~~lL~~~gy~V~tasng~eALelLre~k--~~pDLVILDI 87 (663)
.|.|..+..-.....-...+.+|++++-|+- ..+.|+.+-+..+..+..+.+..+..+.+.... ..+|+||+|.
T Consensus 250 tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 250 TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 4555555433222111234678999998864 334445554455777776777666555554322 1489999996
No 146
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=56.02 E-value=1.9e+02 Score=28.41 Aligned_cols=99 Identities=10% Similarity=0.058 Sum_probs=60.3
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHHhCCCeEE----EECCHHHHHHHHHHcCCCceEEEEecC-----CCCCCHHHHHHHH
Q 006044 33 GLRVLVVDDD--ITCLRILEQMLRRCLYNVT----TCSQAAVALDILRERKGCFDVVLSDVH-----MPDMDGFKLLEHI 101 (663)
Q Consensus 33 giRVLIVDDD--~~~re~L~~lL~~~gy~V~----tasng~eALelLre~k~~pDLVILDI~-----MPdmDG~ELL~~I 101 (663)
|...+++.+. +...+.+.+.+++.+..+. .+.+..++++.+. . ..|.|.+... .....+.+.++++
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~-~--~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLK-L--GVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHH-C--CCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 4455555443 2233444455555555443 5567778877443 2 3788877421 1124567778887
Q ss_pred hccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 102 r~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
+...++|+++.-+- ..+.+.++++.||+.++.=
T Consensus 154 ~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 154 KKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 65567777765554 5788999999999987553
No 147
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=55.78 E-value=1.3e+02 Score=33.69 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=62.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIIL 112 (663)
.++++||-|.+. ++.++++.........-.-..++..+.+.. .|++++=-. .+.=|+.+++.+. ..+|||.-
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI~s 361 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGTPTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVVAA 361 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccCCeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEEEc
Confidence 456777766543 344555544322122223334555555543 477665322 2333555666653 46888854
Q ss_pred ecCCCHHHHHHHHhc---CCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 113 SADGRVSAVMRGIRH---GACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~---GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.... ..+.++. |-.+++..|-+.++|.+.+..++.
T Consensus 362 ~~gg----~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 362 RAGG----IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred CCCC----cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 3322 2344455 889999999999999999988764
No 148
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=55.73 E-value=71 Score=34.62 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=44.9
Q ss_pred CHHHHHHHHhccCCCcEE--EEecCCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006044 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (663)
Q Consensus 93 DG~ELL~~Ir~~~~IPVI--ILSa~~d~e~v~kAl~~GA~dYLl-----KP~s~eeLk~~Iq~VLrk 152 (663)
-++++++++++...+||| ...+-..++.+..++++||+.+++ |.-++.+....+..++.+
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 578999999776789998 566666889999999999999754 444566666655555544
No 149
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=55.53 E-value=2e+02 Score=29.04 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=44.8
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 80 pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.|++|+--...+.-|..+++.+. ..+|||.-. .. ...+-+..|..+++.++-+.+++.+++..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~~~-~~---~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIASD-IG---GMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEECC-CC---CHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46666543323445666777764 467877532 22 24455677888999999999999999988875
No 150
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=55.49 E-value=1.2e+02 Score=33.53 Aligned_cols=105 Identities=12% Similarity=0.154 Sum_probs=61.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceE-EEEecCCCCCCHHHHHHHHhccCCCc
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDV-VLSDVHMPDMDGFKLLEHIGLEMDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasng~eALelLre~k~~pDL-VILDI~MPdmDG~ELL~~Ir~~~~IP 108 (663)
..+||.||.- -.-...+..+.... ++++. .++...+..+.+.+. +.+ +..|+ -+++ ...++-
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~---~gi~~y~~~-------eell----~d~Di~ 66 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHR---LGVPLYCEV-------EELP----DDIDIA 66 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH---hCCCccCCH-------HHHh----cCCCEE
Confidence 4578999987 44333343333322 45543 555544544444432 221 12221 1222 235555
Q ss_pred EEEEec----CCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 109 VIMMSA----DGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 109 VIILSa----~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
+|.+.+ ..-.+.+.+|+++|..=++-||+..+|..++++.+-+
T Consensus 67 ~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~ 113 (343)
T TIGR01761 67 CVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAER 113 (343)
T ss_pred EEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 555522 3457889999999999999999998777777766543
No 151
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=55.45 E-value=94 Score=35.97 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=53.5
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEec--------------CCCC
Q 006044 33 GLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDV--------------HMPD 91 (663)
Q Consensus 33 giRVLIVDD----D~~~re~L~~lL~~~-gy~V~--tasng~eALelLre~k~~pDLVILDI--------------~MPd 91 (663)
+..++.+|- .....+.++.+-+.+ ...|. .+.+.++|..++.. ..|.|.+.+ ..|.
T Consensus 253 g~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~a---Gad~I~vg~g~Gs~~~t~~~~~~g~p~ 329 (495)
T PTZ00314 253 GVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDA---GADGLRIGMGSGSICITQEVCAVGRPQ 329 (495)
T ss_pred CCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHc---CCCEEEECCcCCcccccchhccCCCCh
Confidence 556666663 222233344333332 12222 35555666655543 267765433 2233
Q ss_pred CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 92 MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 92 mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+-+.-+.++....++|||.=-+-.....+.+|+.+||+....
T Consensus 330 ~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~ 372 (495)
T PTZ00314 330 ASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVML 372 (495)
T ss_pred HHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 2222222222234568888766777888999999999998765
No 152
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.33 E-value=1.3e+02 Score=30.97 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=56.1
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHcCC-CceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcC
Q 006044 51 QMLRRCL-YNVTTCSQAAVALDILRERKG-CFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (663)
Q Consensus 51 ~lL~~~g-y~V~tasng~eALelLre~k~-~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~G 128 (663)
..|.+.+ .-|....+.++|++.++.... .++ ++.+.|-.-++++.++.+++...--+|-.-.--+.+.+..++++|
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~--~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG 87 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKALVAGGLP--VLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG 87 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCC--EEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC
Confidence 3444433 456677888888887775421 255 444445555899999999754332333333345668899999999
Q ss_pred CCeEEeCCCCHHHHH
Q 006044 129 ACDYLIKPIREEELK 143 (663)
Q Consensus 129 A~dYLlKP~s~eeLk 143 (663)
|+ |++-|.-..++.
T Consensus 88 A~-FivsP~~~~~vi 101 (212)
T PRK05718 88 AQ-FIVSPGLTPPLL 101 (212)
T ss_pred CC-EEECCCCCHHHH
Confidence 97 666674333443
No 153
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=55.28 E-value=1.6e+02 Score=32.46 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=62.1
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHHcCCCceEEEEecCC----------C-CCC--H
Q 006044 35 RVLVVDDD----ITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHM----------P-DMD--G 94 (663)
Q Consensus 35 RVLIVDDD----~~~re~L~~lL~~~g-y~V~--tasng~eALelLre~k~~pDLVILDI~M----------P-dmD--G 94 (663)
.++++|-- ....+.++.+-+.+. ..|. .+.+.++|..+++. ..|.|..-+.= . +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 67777533 333333444333332 2222 47788888777753 37887643211 0 112 4
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 95 ~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
+..+..+.+..++|||.--+-.....+.+|+..||+.+..=
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 55677776556799998888889999999999999987653
No 154
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=55.07 E-value=40 Score=35.82 Aligned_cols=57 Identities=12% Similarity=0.171 Sum_probs=44.5
Q ss_pred CHHHHHHHHhccCCCcEEEEecCC------CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 006044 93 DGFKLLEHIGLEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (663)
Q Consensus 93 DG~ELL~~Ir~~~~IPVIILSa~~------d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~V 149 (663)
+.+++++++|...++|+|+||=++ -.....++.++|+++.+.--+..+|....++.+
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~ 140 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVC 140 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHH
Confidence 457888888877889998888554 345688899999999999888888877666554
No 155
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=54.41 E-value=68 Score=33.24 Aligned_cols=67 Identities=15% Similarity=0.157 Sum_probs=50.8
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 67 AVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 67 ~eALelLre~k~~pDLVILDI~MPdm-DG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+.++.+.+.. .-.+|++|+..-++ .| +++++++.+..++|||+--+-.+.+.+.++++.|++..++
T Consensus 151 ~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 151 FSFVRQLSDIP-LGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred HHHHHHHHHcC-CCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 45555554432 24799999976543 33 6778888776789999988888999999999999998876
No 156
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=54.32 E-value=1.4e+02 Score=31.79 Aligned_cols=59 Identities=15% Similarity=0.229 Sum_probs=42.5
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCe------EEeCCCCHHHHHHHHHHHHHH
Q 006044 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD------YLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 94 G~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~d------YLlKP~s~eeLk~~Iq~VLrk 152 (663)
.++.++++++..++|||....-.+.+.+.+.+..||+. ++..|.-..++++-+++.+.+
T Consensus 222 ~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~ 286 (301)
T PRK07259 222 ALRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDK 286 (301)
T ss_pred cHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHH
Confidence 36778888766689999999999999999999999864 233455455555555554443
No 157
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.27 E-value=53 Score=35.17 Aligned_cols=90 Identities=11% Similarity=0.215 Sum_probs=57.2
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCC---eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH-Hhc--c-
Q 006044 36 VLVVDDDITCLRILEQMLRR----CLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IGL--E- 104 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~----~gy---~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~-Ir~--~- 104 (663)
|||=|.|......+...+++ ..+ ....+.+.+||++.++. .+|+|.+|= |+ ++.+++ ++. .
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn----~~-~e~l~~~v~~~~~~ 226 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDN----MS-VEEIKEVVAYRNAN 226 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECC----CC-HHHHHHHHHHhhcc
Confidence 56656555444445555542 332 23589999999999864 389999884 33 333333 331 1
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 105 MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 105 ~~IPVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
..-..|..++.-+.+.+.+..+.|++.+.
T Consensus 227 ~~~~~ieAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 227 YPHVLLEASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred CCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 12235667878899999999999998654
No 158
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=53.97 E-value=66 Score=33.15 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPdm-DG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+..+.++.+... .-.++++|+..-++ .| +++++.+.....+||++--+-.+.+.+.++++.|++..+.
T Consensus 147 ~~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 147 GPEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 356666666554 24699999976543 22 6778888766789999988889999999999999998765
No 159
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=53.49 E-value=48 Score=32.94 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=45.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE-ecC-CCCCCH--HHHHHHHhccCCCcEEE
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS-DVH-MPDMDG--FKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVIL-DI~-MPdmDG--~ELL~~Ir~~~~IPVII 111 (663)
|||||....+-..+.++|...++.+....+....++.+.+.. ||.||+ -=- -|..++ .++++++ ...+||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALL--PLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcC--CCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 899999999999999999998888776553322233344333 886666 111 111122 2344443 34678876
Q ss_pred Ee
Q 006044 112 MS 113 (663)
Q Consensus 112 LS 113 (663)
+-
T Consensus 78 IC 79 (188)
T TIGR00566 78 VC 79 (188)
T ss_pred EC
Confidence 64
No 160
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=53.42 E-value=15 Score=36.88 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=37.3
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD 86 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILD 86 (663)
|||||.+..+-..|.++|++.++.+......+..++.+... .||.||+-
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~--~~d~iIls 50 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENM--KPDFLMIS 50 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhC--CCCEEEEC
Confidence 89999999999999999999988887766554334444433 38888773
No 161
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=53.23 E-value=2.4e+02 Score=29.77 Aligned_cols=94 Identities=18% Similarity=0.092 Sum_probs=57.9
Q ss_pred EEEeC-CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEec-C--CCCCCHHHHHHHHh-ccC-CCcE
Q 006044 37 LVVDD-DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV-H--MPDMDGFKLLEHIG-LEM-DLPV 109 (663)
Q Consensus 37 LIVDD-D~~~re~L~~lL~~~gy~V-~tasng~eALelLre~k~~pDLVILDI-~--MPdmDG~ELL~~Ir-~~~-~IPV 109 (663)
|++.+ ++..++.+.....+.|..+ ..+.+.+|+...... .+|+|-+.- + .-..| ++...++. ..+ ..++
T Consensus 139 Li~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~v 214 (260)
T PRK00278 139 LIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLV 214 (260)
T ss_pred EEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEE
Confidence 33333 3333333334444456554 577888888665532 378776431 1 11223 55666654 333 3688
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
|..++-...+.+.++.++||+.++.
T Consensus 215 IaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 215 VSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999765
No 162
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=53.09 E-value=2.3e+02 Score=32.17 Aligned_cols=123 Identities=11% Similarity=0.077 Sum_probs=70.2
Q ss_pred ccccccccCCCCCCCccEEEEEeC-CHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHH-
Q 006044 18 SSRAADVAVPDQFPAGLRVLVVDD-DITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGF- 95 (663)
Q Consensus 18 s~~~~dl~~~d~fP~giRVLIVDD-D~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~- 95 (663)
..+++|..|+. |..+-+.|.|+ -..+-+.++..+.... -+.++-+.+.++... .|+|-+-..--+-+|.
T Consensus 100 vfyrhE~~~~n--pp~ia~dV~D~~~~~~~~~i~~~~~dV~-----~dP~~wak~~V~~~~--aD~Ialr~~S~DP~~~d 170 (389)
T TIGR00381 100 ALYRFEEPQPN--PPVVTFDVFDIPMPGLPKPIRMHFEDVM-----EDPAEWARKCVKEFG--ADMVTIHLISTDPKLDD 170 (389)
T ss_pred cceecCcCCCC--CCeEEEEEecCCccccHHHHHHHHHHHh-----cCHHHHHHHHHHHhC--CCEEEEEecCCCccccc
Confidence 45566666644 56677888887 3344444555544321 112233334443333 7888776655444422
Q ss_pred ----HHHHHH---hccCCCcEEEEec---CCCHHHHHHHHhcCCC-eEEeCCCCHH-HHHHHHHHH
Q 006044 96 ----KLLEHI---GLEMDLPVIMMSA---DGRVSAVMRGIRHGAC-DYLIKPIREE-ELKNIWQHV 149 (663)
Q Consensus 96 ----ELL~~I---r~~~~IPVIILSa---~~d~e~v~kAl~~GA~-dYLlKP~s~e-eLk~~Iq~V 149 (663)
++.+.+ .+.-++|+|+.+. ..+.+.+..+++.-.. .-|+-..+.+ .++.+...+
T Consensus 171 ~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lA 236 (389)
T TIGR00381 171 KSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAA 236 (389)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHH
Confidence 344444 3457889988877 6677777777776554 4666666766 555444433
No 163
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=53.09 E-value=1e+02 Score=27.62 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=14.9
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEEE
Q 006044 39 VDDDITCLRILEQMLRRCLYNVTTC 63 (663)
Q Consensus 39 VDDD~~~re~L~~lL~~~gy~V~ta 63 (663)
-|.+......+.+.|...||.+...
T Consensus 8 ~~~~k~~~~~~~~~l~~~G~~l~aT 32 (110)
T cd01424 8 ADRDKPEAVEIAKRLAELGFKLVAT 32 (110)
T ss_pred EcCcHhHHHHHHHHHHHCCCEEEEc
Confidence 3455555555566666678887543
No 164
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.97 E-value=1.2e+02 Score=32.55 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=60.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhC----C-C-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCC
Q 006044 36 VLVVDDDITCLRILEQMLRRC----L-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDL 107 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~----g-y-~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~--~~I 107 (663)
|||-|+|..+. .+...+... . . ....+.+.+++.+.+... +|+|.+|=..|+ +--++.+.++.. ..-
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~ag---aDiI~LDn~~~e-~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAG---ADIIMLDNMTPE-EIREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcC---cCEEEECCCCHH-HHHHHHHHHHhcCcCCC
Confidence 78888886555 566666532 1 2 345889999999998643 899999965433 112222333321 123
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
..|..|+--+.+.+.+..+.|++.+.
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 45677888888899888899987543
No 165
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=52.54 E-value=1e+02 Score=34.59 Aligned_cols=105 Identities=14% Similarity=0.252 Sum_probs=65.8
Q ss_pred eCCHHHHHHHHHHHHhCCCe----EEEE-----------------------CCHHHHHHHHHHcCCCceEEEEecCCCCC
Q 006044 40 DDDITCLRILEQMLRRCLYN----VTTC-----------------------SQAAVALDILRERKGCFDVVLSDVHMPDM 92 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~----V~ta-----------------------sng~eALelLre~k~~pDLVILDI~MPdm 92 (663)
+++...++.+++.++..+|. |..+ -+..+++++++.....++++.+.==++..
T Consensus 210 ~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~~ 289 (408)
T cd03313 210 SSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDED 289 (408)
T ss_pred CChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence 56777788888888776553 3322 23478888777643347887777666655
Q ss_pred CHHHHHHHHhccC--CCcEEEEecC---CCHHHHHHHHhcCCCe-EEeCCCCHHHHHHHHH
Q 006044 93 DGFKLLEHIGLEM--DLPVIMMSAD---GRVSAVMRGIRHGACD-YLIKPIREEELKNIWQ 147 (663)
Q Consensus 93 DG~ELL~~Ir~~~--~IPVIILSa~---~d~e~v~kAl~~GA~d-YLlKP~s~eeLk~~Iq 147 (663)
| ++-.++|+... .+|| +... .+.....++++.|+++ +++||-..--|-.+++
T Consensus 290 D-~eg~~~L~~~~g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~ 347 (408)
T cd03313 290 D-WEGWAKLTAKLGDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIE 347 (408)
T ss_pred C-HHHHHHHHHhcCCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHH
Confidence 5 55566665444 4444 3332 2567788899888766 5679976554444443
No 166
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=52.18 E-value=1.1e+02 Score=35.02 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=61.6
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CC--eEEEECCHHHHHHHHHHcCCCceEEEEecCCCC------------C
Q 006044 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (663)
Q Consensus 32 ~giRVLIVDDD----~~~re~L~~lL~~~-gy--~V~tasng~eALelLre~k~~pDLVILDI~MPd------------m 92 (663)
.+++++++|.. ..+.+.++.+-.+. .. .+..+.+.++|..+++. ..|.|..-+ -|+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~-g~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGI-GPGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECC-CCCccccceeecCCCc
Confidence 46788888864 22333444443333 22 23567788888888764 278876432 121 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 93 DG~ELL~~Ir---~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.-++++..++ ...++|||.=-+-.....+.+|+.+||+..+.
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~ 359 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVML 359 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEE
Confidence 1244554443 23468888877788889999999999997655
No 167
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=51.82 E-value=71 Score=36.23 Aligned_cols=56 Identities=13% Similarity=0.160 Sum_probs=36.6
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcC--CCceEEEEec
Q 006044 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERK--GCFDVVLSDV 87 (663)
Q Consensus 32 ~giRVLIVDDD~~---~re~L~~lL~~~gy~V~tasng~eALelLre~k--~~pDLVILDI 87 (663)
.+.+|.+|+-|+- ..+.|+.+-+..+..+..+.+..+..+.+.... ..+|+||+|.
T Consensus 233 ~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDT 293 (407)
T PRK12726 233 QNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDT 293 (407)
T ss_pred cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEEC
Confidence 4678999988864 234455555555666666777776655554332 2489999997
No 168
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=51.61 E-value=49 Score=35.71 Aligned_cols=71 Identities=11% Similarity=0.050 Sum_probs=47.0
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 59 ~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
....+.+.++|.+.++. .+|+|++|- |+-.+--++.+.++....-.++-.|+--..+.+.+..+.|++-..
T Consensus 192 IeVEv~tleqa~ea~~a---gaDiI~LDn-~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is 262 (284)
T PRK06096 192 IVVEADTPKEAIAALRA---QPDVLQLDK-FSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFI 262 (284)
T ss_pred EEEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 44578899999999864 389999993 432222233333332222345668888888988888889987543
No 169
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=51.34 E-value=65 Score=34.55 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=54.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILSa 114 (663)
|-+.=.++.....+..+|....|.+..+.++++.++.++.+++.+|.+|+..... -..+..++.+ ..-+|+|++..
T Consensus 3 I~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~---~~~~~~~L~e~g~LLPaVil~~ 79 (283)
T PF07688_consen 3 ICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPL---LPPLFNQLYEQGILLPAVILGS 79 (283)
T ss_dssp EEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTST---THHHHHHHHHCT----EEEES-
T ss_pred EEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCC---cHHHHHHHHHcCccccEEEEec
Confidence 4555567788889999999888999999999999999998888899999987553 3567777753 34679998865
No 170
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=50.98 E-value=1e+02 Score=35.88 Aligned_cols=100 Identities=15% Similarity=0.226 Sum_probs=66.1
Q ss_pred CccEEEEEeCCH----HHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEecC--------------CC
Q 006044 32 AGLRVLVVDDDI----TCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVH--------------MP 90 (663)
Q Consensus 32 ~giRVLIVDDD~----~~re~L~~lL~~~-gy~V--~tasng~eALelLre~k~~pDLVILDI~--------------MP 90 (663)
++..|+++|--. ...+.++.+=..+ +-.| ..+.+.++|..+++. ..|.|.+-++ .|
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCC
Confidence 456788887543 1123333333333 2333 357888888888764 3898876431 23
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 91 dmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
...-+..+..+....++|||.=.+-.....+.+|+.+||+....
T Consensus 336 ~~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~v 379 (505)
T PLN02274 336 QATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMM 379 (505)
T ss_pred cccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 33455566666555689999999999999999999999998765
No 171
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=50.26 E-value=1.1e+02 Score=28.79 Aligned_cols=55 Identities=18% Similarity=0.031 Sum_probs=40.3
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 80 FDVVLSDVHMPDMDG-------FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 80 pDLVILDI~MPdmDG-------~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.|.|.++-..+...+ ...+..++....+||+...+-...+.+.++++.||+.+..
T Consensus 137 ~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 137 VDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 788888877664332 2344555556789999988887778888999999987753
No 172
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=50.16 E-value=1.6e+02 Score=32.30 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=30.8
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 94 G~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|..+++.+ ...+|||.-........+.+.+. ..+++..|-+.++|.+.+..++.
T Consensus 334 g~~~lEAm--a~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 334 GHNPLEPA--AFGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred CCCHHHHH--HhCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 33444444 24678886322233333433332 12466668889999999888764
No 173
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=49.73 E-value=62 Score=34.52 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=33.3
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHH---HHHHHHcCCCceEEEEec
Q 006044 33 GLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVA---LDILRERKGCFDVVLSDV 87 (663)
Q Consensus 33 giRVLIVDDD~~---~re~L~~lL~~~gy~V~tasng~eA---LelLre~k~~pDLVILDI 87 (663)
+.+|.+++-|.. ..+.++.+.+..++.+..+.+..+. ++.+... ..+|+||+|.
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt 162 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDT 162 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEEC
Confidence 467888877643 3444455555567777766665443 3333332 2489999997
No 174
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=49.29 E-value=77 Score=34.25 Aligned_cols=94 Identities=14% Similarity=0.104 Sum_probs=55.7
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--CeE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCC
Q 006044 35 RVLVVDDDITCLRILEQMLR----RCL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~----~~g--y~V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~ 106 (663)
-|||=|.|....-.+++.+. ..+ ..| .++.+.+||.+.+.. .+|+|.+|- |.-.+--+.++.++. .++
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn-~~~e~l~~av~~~~~~~~~ 243 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDN-MPVDLMQQAVQLIRQQNPR 243 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHHHhcCCC
Confidence 36766666544433444443 233 233 478899999998854 389999993 321111122233332 344
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
++ |..++--+.+.+.+....|++...
T Consensus 244 i~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 244 VK-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 44 556666788888888899987653
No 175
>PRK14974 cell division protein FtsY; Provisional
Probab=48.91 E-value=92 Score=34.31 Aligned_cols=98 Identities=22% Similarity=0.240 Sum_probs=50.5
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECCH-------HHHHHHHHHcCCCceEEEEecCCCCCC--HHHHHH
Q 006044 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCSQA-------AVALDILRERKGCFDVVLSDVHMPDMD--GFKLLE 99 (663)
Q Consensus 32 ~giRVLIVDDD~---~~re~L~~lL~~~gy~V~tasng-------~eALelLre~k~~pDLVILDI~MPdmD--G~ELL~ 99 (663)
.+.+|++++-|. ...+.|+.+....+..+.....+ .++++.++.. .+|+||+|.- +.. -.+++.
T Consensus 167 ~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~--~~DvVLIDTa--Gr~~~~~~lm~ 242 (336)
T PRK14974 167 NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR--GIDVVLIDTA--GRMHTDANLMD 242 (336)
T ss_pred cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC--CCCEEEEECC--CccCCcHHHHH
Confidence 457899998773 33445555555556555433221 2445554443 3899999984 221 223333
Q ss_pred HHh-----ccCCCcEEEEecCCCHHHHH--HHH--hcCCCeEE
Q 006044 100 HIG-----LEMDLPVIMMSADGRVSAVM--RGI--RHGACDYL 133 (663)
Q Consensus 100 ~Ir-----~~~~IPVIILSa~~d~e~v~--kAl--~~GA~dYL 133 (663)
.++ ..++..++++++....+... +.| ..+.+..|
T Consensus 243 eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giI 285 (336)
T PRK14974 243 ELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVI 285 (336)
T ss_pred HHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEE
Confidence 332 23555566666544433332 222 24555543
No 176
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=48.83 E-value=1.2e+02 Score=27.19 Aligned_cols=70 Identities=20% Similarity=0.154 Sum_probs=48.9
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCCC-CHHHHHHHHh-ccC-CCcEEE
Q 006044 40 DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIG-LEM-DLPVIM 111 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~ta---sng~eALelLre~k~~pDLVILDI~MPdm-DG~ELL~~Ir-~~~-~IPVII 111 (663)
|.++.-...+..+++..|+++... ....+.++.+.+.+ ||+|.+...+... ..++.+..++ ..+ ++++++
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~~--pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivv 85 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEED--ADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVV 85 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHcC--CCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEE
Confidence 667777888999999999988643 35667777777654 9999999877653 2445555554 344 566665
No 177
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=48.78 E-value=2.2 Score=42.65 Aligned_cols=112 Identities=22% Similarity=0.247 Sum_probs=73.9
Q ss_pred EEEeCCHHHHHHHHHHHHhCCC----eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcE
Q 006044 37 LVVDDDITCLRILEQMLRRCLY----NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (663)
Q Consensus 37 LIVDDD~~~re~L~~lL~~~gy----~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~IPV 109 (663)
+.+||+...+..+..++...-+ .........+....... ..+|+++.++.||++.+++++.++.. ..++++
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (340)
T KOG1601|consen 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATS--FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPV 96 (340)
T ss_pred cccccccCCcccccccccccccccccccccccchhhhhhcccc--ccccccccccccccccccccccccccCCCCCCCCc
Confidence 7777777777776666655321 11122222110000000 24899999999999999999988853 345667
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
+++............+..++.+|+.||....++...+.++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 137 (340)
T KOG1601|consen 97 PSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHVR 137 (340)
T ss_pred ccccccccchhhhcccCCcccccccccccCCCcccCCcccc
Confidence 77776666666777788889999999998777776666654
No 178
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=48.77 E-value=1.4e+02 Score=34.32 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHhCC-CeEEEEC------CHHHHHHHHHHcCCCceEEEEecCCCCCC-HHHHHHHHhc-cCCCcEEEE
Q 006044 42 DITCLRILEQMLRRCL-YNVTTCS------QAAVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 42 D~~~re~L~~lL~~~g-y~V~tas------ng~eALelLre~k~~pDLVILDI~MPdmD-G~ELL~~Ir~-~~~IPVIIL 112 (663)
.|.-+..|...|+..| ++|.... +.++..+.+++.. ||+|.+-..-+... ..++++.+|+ .++++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~--pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHC--PDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcC--cCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 5777889999998888 5776543 2334445566544 99999987655432 4567777764 467766653
Q ss_pred ecCCCHHHHHHHHh-cCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 113 SADGRVSAVMRGIR-HGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 113 Sa~~d~e~v~kAl~-~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
-.+... ...+.++ ....||++.--..+.+.++++.+..+
T Consensus 99 G~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~g 138 (497)
T TIGR02026 99 GIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALENH 138 (497)
T ss_pred CCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHcC
Confidence 333322 2234443 45678999988888888888776443
No 179
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=48.64 E-value=2e+02 Score=28.99 Aligned_cols=69 Identities=12% Similarity=0.198 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPdm---DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+..+.++.+.+.. .=-++++|+..-++ --+++++++++..++|||.-..-.+.+.+.++++.||++.+.
T Consensus 147 ~~~~~~~~~~~~g-a~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEELG-VKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHcC-CCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 3445555555432 12467787754322 226888888877789999988888888899999999998765
No 180
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=48.31 E-value=22 Score=35.21 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=46.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecC-C-CCCCH--HHHHHHHhccCCCcEEE
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH-M-PDMDG--FKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~-M-PdmDG--~ELL~~Ir~~~~IPVII 111 (663)
||+||....+-..|..+|++.++.|....+...-++.+++.. ||.||+-=- | |..++ ..+++.+ ..++||+-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~--~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLA--PSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcC--CCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 899999999999999999998888877665432234444433 787776321 1 11122 2333332 34678776
Q ss_pred Ee
Q 006044 112 MS 113 (663)
Q Consensus 112 LS 113 (663)
+-
T Consensus 78 IC 79 (191)
T PRK06774 78 VC 79 (191)
T ss_pred EC
Confidence 54
No 181
>PRK12704 phosphodiesterase; Provisional
Probab=48.20 E-value=19 Score=41.77 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=39.1
Q ss_pred cEEEEecCCCHH--HHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 108 PVIMMSADGRVS--AVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 108 PVIILSa~~d~e--~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
.+|++|+++... .+..+++.++.|+..||++++++...++.-+..
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 388999998876 889999999999999999999998887766543
No 182
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=47.98 E-value=1.4e+02 Score=32.43 Aligned_cols=89 Identities=18% Similarity=0.220 Sum_probs=58.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhC----CCe--E-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCC
Q 006044 36 VLVVDDDITCLRILEQMLRRC----LYN--V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~----gy~--V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~--~~~ 106 (663)
|||=|.|....-.+++.+++. .|. | ..+.+.+++.++++.. +|+|++|= |+--++-+.++. ...
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~ag---aDiImLDN----m~~e~~~~av~~l~~~~ 233 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAG---ADIIMLDN----MSPEELKEAVKLLGLAG 233 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcC---CCEEEecC----CCHHHHHHHHHHhccCC
Confidence 677666665555577766542 442 2 4788999999998753 89999994 333344443332 333
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCe
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACD 131 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~d 131 (663)
-.++=.|+.-..+.+.+....|++-
T Consensus 234 ~~~lEaSGgIt~~ni~~yA~tGVD~ 258 (280)
T COG0157 234 RALLEASGGITLENIREYAETGVDV 258 (280)
T ss_pred ceEEEEeCCCCHHHHHHHhhcCCCE
Confidence 3445578888888888888888764
No 183
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.89 E-value=1.5e+02 Score=33.58 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=52.5
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecC--CC-CCCHHHHHHHH-h-c
Q 006044 32 AGLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MP-DMDGFKLLEHI-G-L 103 (663)
Q Consensus 32 ~giRVLIVDDD~~~---re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~--MP-dmDG~ELL~~I-r-~ 103 (663)
.+.+|.+|+-|+-- .+.|+.+-+..+..+..+.+..+....++... .+|+||+|.- .+ +....+.+..+ + .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~ 328 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFS 328 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhcc
Confidence 45799999988732 23344444444666666777777666666543 5899999963 11 12233334333 3 2
Q ss_pred cCCC-cEEEEecCCCHHHHHHH
Q 006044 104 EMDL-PVIMMSADGRVSAVMRG 124 (663)
Q Consensus 104 ~~~I-PVIILSa~~d~e~v~kA 124 (663)
...+ .++++++........+.
T Consensus 329 ~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 329 GEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred CCCCeEEEEEECCCCHHHHHHH
Confidence 1223 35667776665444443
No 184
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=47.55 E-value=69 Score=33.76 Aligned_cols=80 Identities=24% Similarity=0.256 Sum_probs=50.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHHcCCCceEEEEecCCCCCCHH-----------
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVHMPDMDGF----------- 95 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tas-------ng~eALelLre~k~~pDLVILDI~MPdmDG~----------- 95 (663)
|||||+-..-.+-..|.+.|...+++|.... +..+..+.+++.+ ||+||-=.-+.+.+..
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~~--pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAFK--PDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHhC--CCeEeccceeecHHhhhhChhhhHHHh
Confidence 7999999999999999999998888877653 5555566666665 9999876544332221
Q ss_pred ----HHHHHHhccCCCcEEEEecC
Q 006044 96 ----KLLEHIGLEMDLPVIMMSAD 115 (663)
Q Consensus 96 ----ELL~~Ir~~~~IPVIILSa~ 115 (663)
..+.++....++++|.+|+.
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 11222223467899999974
No 185
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=47.40 E-value=1.8e+02 Score=33.05 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=61.1
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHHhC-CCe--EEEECCHHHHHHHHHHcCCCceEEEEecCC--------------C
Q 006044 32 AGLRVLVVDDD----ITCLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHM--------------P 90 (663)
Q Consensus 32 ~giRVLIVDDD----~~~re~L~~lL~~~-gy~--V~tasng~eALelLre~k~~pDLVILDI~M--------------P 90 (663)
++..|+++|-- ....+.++.+=..+ ... +.-+.+.++|..+++. ..|.|..-+.- |
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 46778887752 22223333332222 122 2357888888888764 37888754311 2
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 91 DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 91 dmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
..+-+..+..+.....+|||+=-.-.....+.+|+.+||+....
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmv 284 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 22222223333334578999888888999999999999998765
No 186
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.34 E-value=1.7e+02 Score=30.07 Aligned_cols=91 Identities=15% Similarity=0.045 Sum_probs=58.4
Q ss_pred HHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCC-Cc-E-EEEecCCCHHHHHHHHhc
Q 006044 52 MLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD-LP-V-IMMSADGRVSAVMRGIRH 127 (663)
Q Consensus 52 lL~~~g-y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~-IP-V-IILSa~~d~e~v~kAl~~ 127 (663)
.|.+.. .-|....+.++++..++... .--+=++.+.|-.-++++.++.+++... -| + |=.-.--+.+.+.+++++
T Consensus 9 ~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~a 87 (213)
T PRK06552 9 KLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILA 87 (213)
T ss_pred HHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHc
Confidence 344333 35567778888887766531 1234466666667779999999975432 12 3 334445678889999999
Q ss_pred CCCeEEeCCCCHHHHHH
Q 006044 128 GACDYLIKPIREEELKN 144 (663)
Q Consensus 128 GA~dYLlKP~s~eeLk~ 144 (663)
||. |++-|.-..++.+
T Consensus 88 GA~-FivsP~~~~~v~~ 103 (213)
T PRK06552 88 GAQ-FIVSPSFNRETAK 103 (213)
T ss_pred CCC-EEECCCCCHHHHH
Confidence 997 7777865555544
No 187
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=47.29 E-value=1.9e+02 Score=30.10 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCce-EEEEecCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcC-CCeEEe------C
Q 006044 67 AVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDYLI------K 135 (663)
Q Consensus 67 ~eALelLre~k~~pD-LVILDI~MPd-mDG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~G-A~dYLl------K 135 (663)
.+..+.+.+.. .| ++++|+.--+ +.| +++++++++..++|||..-.-.+.+.+.++++.| ++..+. +
T Consensus 158 ~~~~~~l~~~G--~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 158 VEWAKEVEKLG--AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHHHHHHHcC--CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 34444554433 66 4555543211 122 5888888877789999998889999999999988 777433 3
Q ss_pred CCCHHHHHHHH
Q 006044 136 PIREEELKNIW 146 (663)
Q Consensus 136 P~s~eeLk~~I 146 (663)
-++.++++..+
T Consensus 236 ~~~~~~~~~~~ 246 (254)
T TIGR00735 236 EITIGEVKEYL 246 (254)
T ss_pred CCCHHHHHHHH
Confidence 34555554444
No 188
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=47.20 E-value=60 Score=32.28 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=58.1
Q ss_pred EEEEeCCHHHHHHHHHHHHh----C--CC-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006044 36 VLVVDDDITCLRILEQMLRR----C--LY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~----~--gy-~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IP 108 (663)
|||=|.+..+.-.+.+.++. . .. ....+.+.+++.+.++.. +|+|.+|-.-|+ +--++++.++....-.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g---~d~I~lD~~~~~-~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAG---ADIIMLDNMSPE-DLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT----SEEEEES-CHH-HHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhC---CCEEEecCcCHH-HHHHHHHHHhhcCCcE
Confidence 66666665544445444443 2 22 335789999999988753 899999965441 2223333344434447
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
.|..|+--+.+.+.+..+.|++.+-
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 7888988888889888899986653
No 189
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=46.75 E-value=3.6e+02 Score=29.35 Aligned_cols=76 Identities=13% Similarity=0.214 Sum_probs=46.7
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeE-EeCCCCHHHHHH
Q 006044 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPIREEELKN 144 (663)
Q Consensus 66 g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dY-LlKP~s~eeLk~ 144 (663)
.++..+.+.. .|++++--...+.=|.-+++.+. ..+|||.... .. ..+.+..|..+| +..|.+.++|.+
T Consensus 267 ~~~l~~~~~~----aDv~v~pS~~~E~f~~~~lEAma--~G~PVI~s~~-gg---~~Eiv~~~~~G~~l~~~~d~~~la~ 336 (380)
T PRK15484 267 PEKMHNYYPL----ADLVVVPSQVEEAFCMVAVEAMA--AGKPVLASTK-GG---ITEFVLEGITGYHLAEPMTSDSIIS 336 (380)
T ss_pred HHHHHHHHHh----CCEEEeCCCCccccccHHHHHHH--cCCCEEEeCC-CC---cHhhcccCCceEEEeCCCCHHHHHH
Confidence 3444444442 47777643333333455556553 4688876433 22 334566788898 567899999999
Q ss_pred HHHHHHH
Q 006044 145 IWQHVVR 151 (663)
Q Consensus 145 ~Iq~VLr 151 (663)
.+.+++.
T Consensus 337 ~I~~ll~ 343 (380)
T PRK15484 337 DINRTLA 343 (380)
T ss_pred HHHHHHc
Confidence 9988764
No 190
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=46.67 E-value=1.7e+02 Score=33.09 Aligned_cols=65 Identities=18% Similarity=0.325 Sum_probs=42.6
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhc------CCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH------GACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 80 pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~------GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.|++++--. .+.-|+.+++.+. ..+|||. |.... ..+.+.. |.++++..|-+.++|.+++.+++.
T Consensus 371 aDv~vlpS~-~Eg~p~~vlEAma--~G~PVVa-td~g~---~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~ 441 (475)
T cd03813 371 LDVLVLTSI-SEGQPLVILEAMA--AGIPVVA-TDVGS---CRELIEGADDEALGPAGEVVPPADPEALARAILRLLK 441 (475)
T ss_pred CCEEEeCch-hhcCChHHHHHHH--cCCCEEE-CCCCC---hHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhc
Confidence 566666432 2334556666653 4678876 33322 3344444 778999999999999999988764
No 191
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=46.54 E-value=2.7e+02 Score=29.30 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=58.3
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EE--CCHHHHHHHHHHcCCCceEEEEecCCCC------CCHHHHHHHHh
Q 006044 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TC--SQAAVALDILRERKGCFDVVLSDVHMPD------MDGFKLLEHIG 102 (663)
Q Consensus 33 giRVLIVDDD~-~~re~L~~lL~~~gy~V~-ta--sng~eALelLre~k~~pDLVILDI~MPd------mDG~ELL~~Ir 102 (663)
|..-+|+=|.+ .....+...+++.+.... .+ ++..+-++.+.+....+..++.=..-.+ .+-.+.++++|
T Consensus 115 GvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr 194 (256)
T TIGR00262 115 GVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLK 194 (256)
T ss_pred CCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHH
Confidence 44444444443 344455555566664422 22 2223444444444433555554111111 12356777777
Q ss_pred ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 103 LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 103 ~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
+..+.||++=.+-.+.+.+.++.++||+.++.-.
T Consensus 195 ~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 195 AYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred hhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 6667787764445568899999999999998865
No 192
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=46.14 E-value=1.6e+02 Score=31.25 Aligned_cols=65 Identities=25% Similarity=0.276 Sum_probs=41.7
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 80 pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.|++++=-. .+.=|..+++.+. ..+|||. |.... ..+.+..|..+++..|-+.+++.+.+..++.
T Consensus 273 adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 273 LDLFVLPSL-AEGISNTILEAMA--SGLPVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred cCEEEeccc-cccCchHHHHHHH--cCCCEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 455554221 2233556666653 4678876 32222 3445667888999999999999999988764
No 193
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=45.90 E-value=1.1e+02 Score=32.52 Aligned_cols=115 Identities=19% Similarity=0.217 Sum_probs=67.1
Q ss_pred ccEEEEEeCCHHH----HHHH--HHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEecCCCCCCH-----HHHHH
Q 006044 33 GLRVLVVDDDITC----LRIL--EQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLLE 99 (663)
Q Consensus 33 giRVLIVDDD~~~----re~L--~~lL~~~gy~V~tas--ng~eALelLre~k~~pDLVILDI~MPdmDG-----~ELL~ 99 (663)
.+|+=|+.|+... .+.+ .+.|-+.||.|..+. |..-|-++ .+.. . -+++-+--|-.+| -..++
T Consensus 93 wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL-~d~G--c-aavMPlgsPIGSg~Gi~n~~~l~ 168 (247)
T PF05690_consen 93 WIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRL-EDAG--C-AAVMPLGSPIGSGRGIQNPYNLR 168 (247)
T ss_dssp EEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHH-HHTT----SEBEEBSSSTTT---SSTHHHHH
T ss_pred eEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHH-HHCC--C-CEEEecccccccCcCCCCHHHHH
Confidence 4677777665432 2222 334556699997444 44444333 3322 1 2455555554444 35677
Q ss_pred HHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC-----CCCHHHHHHHHHHHHH
Q 006044 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK-----PIREEELKNIWQHVVR 151 (663)
Q Consensus 100 ~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK-----P~s~eeLk~~Iq~VLr 151 (663)
.|++..++|||+=.+-.....+.+|++.|++..|+- --++-.+..++++.+.
T Consensus 169 ~i~~~~~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 169 IIIERADVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHHGSSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHH
Confidence 777667999999999999999999999999999874 4567777777777664
No 194
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=45.72 E-value=1.9e+02 Score=31.59 Aligned_cols=99 Identities=17% Similarity=0.309 Sum_probs=56.2
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CeEE--EECCHHHHHHHHHHcCCCceEEEEecCCCC------------C
Q 006044 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (663)
Q Consensus 32 ~giRVLIVDD----D~~~re~L~~lL~~~g-y~V~--tasng~eALelLre~k~~pDLVILDI~MPd------------m 92 (663)
.+.+++++|- .....+.++.+-+... ..|. .+.+.+.|..+++. ..|.|.+.+ -|+ .
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~ 180 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGV 180 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCC
Confidence 3567777763 2333444444333321 2332 46677777766653 378887632 111 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 93 DG~ELL~~Ir---~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.-+.++..+. ...++|||.--.-.+...+.+|+.+||+....
T Consensus 181 p~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 181 PQATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CHHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 1223333332 23468988666667788899999999998655
No 195
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=45.62 E-value=1.7e+02 Score=34.00 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=43.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tas-ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir-~~~~IPVI 110 (663)
+..|++||.|+...+.++ +.++.+...+ .-.+.++.+.-. +.|.+++-+.-.+.+ ..++..++ ..++.++|
T Consensus 440 g~~vvvId~d~~~~~~~~----~~g~~~i~GD~~~~~~L~~a~i~--~a~~viv~~~~~~~~-~~iv~~~~~~~~~~~ii 512 (558)
T PRK10669 440 GIPLVVIETSRTRVDELR----ERGIRAVLGNAANEEIMQLAHLD--CARWLLLTIPNGYEA-GEIVASAREKRPDIEII 512 (558)
T ss_pred CCCEEEEECCHHHHHHHH----HCCCeEEEcCCCCHHHHHhcCcc--ccCEEEEEcCChHHH-HHHHHHHHHHCCCCeEE
Confidence 345666666665433332 2344443222 112333333222 366666544322111 22333344 34667777
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
.-.. +.+......+.||+ ++.-|
T Consensus 513 ar~~--~~~~~~~l~~~Gad-~vv~p 535 (558)
T PRK10669 513 ARAH--YDDEVAYITERGAN-QVVMG 535 (558)
T ss_pred EEEC--CHHHHHHHHHcCCC-EEECh
Confidence 6654 33444455678877 44444
No 196
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=45.08 E-value=4.5e+02 Score=29.03 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=67.6
Q ss_pred ccccccCCCCCCCccEEEEEeCCH-HHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHHcCCCceEEEEecCCCCCCH---
Q 006044 20 RAADVAVPDQFPAGLRVLVVDDDI-TCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDG--- 94 (663)
Q Consensus 20 ~~~dl~~~d~fP~giRVLIVDDD~-~~re~L~~lL~~~gy~V~tasng~-eALelLre~k~~pDLVILDI~MPdmDG--- 94 (663)
+++|..|+. |..+-+.|.|+-+ .+-+.++..+... ..+.. -|.+..++. ..|+|-+-+.-.+-++
T Consensus 38 ~r~e~~~~n--~p~ia~~v~D~~~~~~~~~i~~~~~~v------~~~p~~~Ak~q~~~~--GAd~Idl~~~s~dp~~~d~ 107 (319)
T PRK04452 38 YHFEGPMPN--PPVIAMEVFDMPPEDWPEAVKEPFGDV------MNDPAAWAKKCVEEY--GADMITLHLISTDPNGKDK 107 (319)
T ss_pred cccCCCCCC--CCeEEEEEecCCCcccHHHHHHHHHHH------hcCHHHHHHHHHHHh--CCCEEEEECCCCCcccccc
Confidence 667766654 5667788888876 4444555555441 22222 233222232 3666555432223222
Q ss_pred -----HHHHHHHhccCCCcEEEEecC---CCHHHHHHHHhcCCCe-EEeCCCCHHHHHHHHHHH
Q 006044 95 -----FKLLEHIGLEMDLPVIMMSAD---GRVSAVMRGIRHGACD-YLIKPIREEELKNIWQHV 149 (663)
Q Consensus 95 -----~ELL~~Ir~~~~IPVIILSa~---~d~e~v~kAl~~GA~d-YLlKP~s~eeLk~~Iq~V 149 (663)
..+++.+.+.-++|+++.+.. .+.+.+.++++.-... -|+=+.+.+.++.+...+
T Consensus 108 ~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~en~~~i~~lA 171 (319)
T PRK04452 108 SPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEEDNYKKIAAAA 171 (319)
T ss_pred hHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHHHHHHHHHHH
Confidence 234455555678999877663 3788888888764433 577778877655555444
No 197
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=45.00 E-value=1.4e+02 Score=29.22 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=49.1
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEecCCCC--------CCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCCe
Q 006044 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACD 131 (663)
Q Consensus 61 ~tasng~eALelLre~k~~pDLVILDI~MPd--------mDG~ELL~~Ir~-~~~IPVIILSa~~d~e~v~kAl~~GA~d 131 (663)
.++.+.+++.+..+ . ..|.|.++-..+. ..|++.++.+.. .+++||+++-+- +.+.+.++++.|+++
T Consensus 101 ~s~h~~~e~~~a~~-~--g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~g 176 (196)
T TIGR00693 101 VSTHNLEELAEAEA-E--GADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADG 176 (196)
T ss_pred EeCCCHHHHHHHhH-c--CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 36777777766443 2 3899988765542 237899988864 346898877655 577888889999988
Q ss_pred EEe
Q 006044 132 YLI 134 (663)
Q Consensus 132 YLl 134 (663)
+..
T Consensus 177 va~ 179 (196)
T TIGR00693 177 VAV 179 (196)
T ss_pred EEE
Confidence 654
No 198
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.86 E-value=1.5e+02 Score=35.95 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=48.6
Q ss_pred CceEEEEe-cCCCCCCHHHHHHH-HhccC-CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 79 CFDVVLSD-VHMPDMDGFKLLEH-IGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 79 ~pDLVILD-I~MPdmDG~ELL~~-Ir~~~-~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
.+.++|+| ++|-...++..+.+ |.+.+ .+.+|+.|. +...+...+...+.-|-.||++.+++...+++++.+.
T Consensus 118 k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt--d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 118 RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT--DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC--ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc
Confidence 37888888 66655556665544 44323 355565553 3333445555667789999999999999999888653
No 199
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=44.68 E-value=1.6e+02 Score=31.60 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=60.4
Q ss_pred EEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHHH-------HHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006044 35 RVLVV--DDDITCL---RILEQMLRRCLYNVTTCSQAAVALDI-------LRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (663)
Q Consensus 35 RVLIV--DDD~~~r---e~L~~lL~~~gy~V~tasng~eALel-------Lre~k~~pDLVILDI~MPdmDG~ELL~~Ir 102 (663)
+|+|+ .+.+... +.+.++|+..++.+.........+.. .......+|+||+ -+.||- +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 47777 3334444 45555566667876654432221110 1111224788887 367773 455554
Q ss_pred c--cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 103 L--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 103 ~--~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
. ..++|++-+. .|-.+||. .+..+++...+.+++++.+
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCCc
Confidence 2 3578887554 46668888 7888999999999876543
No 200
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=44.30 E-value=1e+02 Score=31.84 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=43.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHc--CCCceEEEEecC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVH 88 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~--V~-tasng~eALelLre~--k~~pDLVILDI~ 88 (663)
+..-+|.-+|-++...+..++.+...++. |. ...++.+.+..+... ...||+|++|..
T Consensus 91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 43448999999999999999999887652 33 456777777766433 235999999975
No 201
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=43.59 E-value=2.3e+02 Score=29.27 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCCce-EEEEecCC----CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhc-CCCeEEe------
Q 006044 67 AVALDILRERKGCFD-VVLSDVHM----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-GACDYLI------ 134 (663)
Q Consensus 67 ~eALelLre~k~~pD-LVILDI~M----PdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~-GA~dYLl------ 134 (663)
.+..+.+.+.. ++ ++++|+.- .+. -++++++++...++|||+--.-.+.+.+.++++. ||++.+.
T Consensus 156 ~~~~~~~~~~g--~~~ii~~~i~~~g~~~g~-d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 156 VEWAKEVEELG--AGEILLTSMDRDGTKNGY-DLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HHHHHHHHHcC--CCEEEEcCCcCCCCCCCc-CHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 34445444432 54 77877542 222 2677888877678999998888888889999975 9987665
Q ss_pred CCCCHHHHHHHH
Q 006044 135 KPIREEELKNIW 146 (663)
Q Consensus 135 KP~s~eeLk~~I 146 (663)
.-++.++++..+
T Consensus 233 ~~~~~~~~~~~~ 244 (253)
T PRK02083 233 GEITIGELKAYL 244 (253)
T ss_pred CCCCHHHHHHHH
Confidence 345556665544
No 202
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=43.54 E-value=1.2e+02 Score=29.84 Aligned_cols=102 Identities=14% Similarity=0.203 Sum_probs=61.7
Q ss_pred HHHHcCCCCCCccccccccCC--C-CCCCccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEE-------CCHHHHHHHHH
Q 006044 7 IVQSSGGSGYGSSRAADVAVP--D-QFPAGLRVLVVDDDITCLRILEQMLRRC--LYNVTTC-------SQAAVALDILR 74 (663)
Q Consensus 7 ~v~~mGGsg~gs~~~~dl~~~--d-~fP~giRVLIVDDD~~~re~L~~lL~~~--gy~V~ta-------sng~eALelLr 74 (663)
+....|+....++...|+... + --..+.+|.++-..+...+.+.+.|++. +..+..+ .+..+.++.+.
T Consensus 17 ~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~ 96 (171)
T cd06533 17 AARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERIN 96 (171)
T ss_pred HHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHH
Confidence 344455543444444444210 1 1123689999999999999988888876 3344331 12233466776
Q ss_pred HcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006044 75 ERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (663)
Q Consensus 75 e~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIIL 112 (663)
+.. ||+|++-+.+|... .++.+.+...+.+|++-
T Consensus 97 ~~~--pdiv~vglG~PkQE--~~~~~~~~~l~~~v~~~ 130 (171)
T cd06533 97 ASG--ADILFVGLGAPKQE--LWIARHKDRLPVPVAIG 130 (171)
T ss_pred HcC--CCEEEEECCCCHHH--HHHHHHHHHCCCCEEEE
Confidence 655 99999999999765 34555554445566553
No 203
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=43.50 E-value=1.6e+02 Score=30.08 Aligned_cols=85 Identities=11% Similarity=0.021 Sum_probs=53.7
Q ss_pred eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE-EEecCCCHHHHHHHHhcCCCeEEeCCC
Q 006044 59 NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI-MMSADGRVSAVMRGIRHGACDYLIKPI 137 (663)
Q Consensus 59 ~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI-ILSa~~d~e~v~kAl~~GA~dYLlKP~ 137 (663)
-|....+.+++++.++... .-.+=++.+.+-.-++++.++.++.....+++ =.-.--+.+.+..++++||+ |+.-|.
T Consensus 14 ~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~-fivsp~ 91 (206)
T PRK09140 14 AILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGR-LIVTPN 91 (206)
T ss_pred EEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCC-EEECCC
Confidence 4556667777777665421 12333566667777899999998754443433 23334567788999999995 666676
Q ss_pred CHHHHHHH
Q 006044 138 REEELKNI 145 (663)
Q Consensus 138 s~eeLk~~ 145 (663)
...++.+.
T Consensus 92 ~~~~v~~~ 99 (206)
T PRK09140 92 TDPEVIRR 99 (206)
T ss_pred CCHHHHHH
Confidence 55555443
No 204
>PRK14098 glycogen synthase; Provisional
Probab=43.24 E-value=2.6e+02 Score=32.02 Aligned_cols=112 Identities=9% Similarity=0.084 Sum_probs=61.9
Q ss_pred ccEEEEEeC-CHHHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006044 33 GLRVLVVDD-DITCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (663)
Q Consensus 33 giRVLIVDD-D~~~re~L~~lL~~~gy~V~t--asng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPV 109 (663)
.++++|+-+ +...++.|+++..+..-.|.. .-+..++.+.+.. .|++++=- ..+.-|+..++.++ ..+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~----aDi~l~PS-~~E~~Gl~~lEAma--~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG----LDMLLMPG-KIESCGMLQMFAMS--YGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh----CCEEEeCC-CCCCchHHHHHHHh--CCCCe
Confidence 456666654 333455666665544323322 2233333344332 57776532 22444666666553 45566
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|+.....-.+.+.+....+..+|+..|.+.++|..++.+++.
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 654433333333333334678999999999999999988764
No 205
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=42.92 E-value=2.1e+02 Score=29.42 Aligned_cols=100 Identities=18% Similarity=0.236 Sum_probs=61.6
Q ss_pred CccEEEEEeCCHH----HHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEecC------CCCCCHHHHHHH
Q 006044 32 AGLRVLVVDDDIT----CLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEH 100 (663)
Q Consensus 32 ~giRVLIVDDD~~----~re~L~~lL~~~gy-~V~tasng~eALelLre~k~~pDLVILDI~------MPdmDG~ELL~~ 100 (663)
.|-.|+-+|--.- .++.+-..++..+. -...|++.+|++...+. .+|+|=+-+. ..+..-|+|+++
T Consensus 63 aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~ 139 (192)
T PF04131_consen 63 AGADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVRE 139 (192)
T ss_dssp CT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHH
T ss_pred cCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHH
Confidence 3556777775422 23333333444332 23478999999988764 3898876541 123346899999
Q ss_pred HhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 101 IGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 101 Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
+... .+|||.=-....++.+.+++++||+..++=
T Consensus 140 l~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 140 LVQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred HHhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 9764 899888777889999999999999988763
No 206
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=42.29 E-value=1.1e+02 Score=32.47 Aligned_cols=54 Identities=30% Similarity=0.345 Sum_probs=31.5
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEEC---CH-H---HHHHHHHHcCCCceEEEEec
Q 006044 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCS---QA-A---VALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 32 ~giRVLIVDDD~~---~re~L~~lL~~~gy~V~tas---ng-~---eALelLre~k~~pDLVILDI 87 (663)
.+.+|++||-|.. ..+.++.+.+..+..+.... +. . ++++.+... .+|+||+|.
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~~--~~D~ViIDT 162 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKAR--NIDVVLIDT 162 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHHC--CCCEEEEeC
Confidence 4679999998852 23445555565565544322 22 2 333333333 499999997
No 207
>PRK07695 transcriptional regulator TenI; Provisional
Probab=41.99 E-value=2.3e+02 Score=28.23 Aligned_cols=67 Identities=16% Similarity=0.225 Sum_probs=47.7
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MPd-------mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
++.+.+++.+... . ..|.|++.-..|. ..|++.++.+....++||+++-+- +.+.+.++++.|++.+
T Consensus 101 s~~s~e~a~~a~~-~--Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 101 SVHSLEEAIQAEK-N--GADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred eCCCHHHHHHHHH-c--CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 5667777655433 2 3898887643322 236788888876667999987766 7788889999999876
No 208
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=41.83 E-value=2.2e+02 Score=29.77 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=43.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 80 pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.|++++=.. .+.-|+.+++.+. ..+|||... .. ...+.+..|..+|+.+|-+.+++.+.+..++.
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~s~-~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMA--CGVPVVASN-AG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHH--cCCCEEEeC-CC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 466655332 2334566666653 467888632 22 24556777889999999999999998887754
No 209
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=41.72 E-value=1.4e+02 Score=32.54 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=56.6
Q ss_pred EEEEeCCHHHHHHHHHHHHh----C--CCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006044 36 VLVVDDDITCLRILEQMLRR----C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~----~--gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPV 109 (663)
|||=|.|....-.++..+++ . ......+.+.+++.+.++.. +|+|.+|=.-| -++-+.++....-..
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~g---aDiI~LDn~s~----e~~~~av~~~~~~~~ 254 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKAG---ADIIMLDNFTT----EQMREAVKRTNGRAL 254 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcC---CCEEEeCCCCh----HHHHHHHHhhcCCeE
Confidence 56656654444344444432 2 13445899999999998743 89999995443 233333332222235
Q ss_pred EEEecCCCHHHHHHHHhcCCCeE
Q 006044 110 IMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dY 132 (663)
|..|+--+.+.+.+..+.|++-.
T Consensus 255 ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 255 LEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred EEEECCCCHHHHHHHHhcCCCEE
Confidence 66777888888888889998754
No 210
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=41.61 E-value=28 Score=36.99 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=34.4
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEec
Q 006044 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 34 iRVLIVDDD~~---~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI 87 (663)
.+|.+|+-|+. ..+.+..+-+..+..+..+.+..+..+.++... .+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-DKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc-CCCEEEEeC
Confidence 78999988863 233444444444556666677766666666543 489999995
No 211
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=41.43 E-value=2.1e+02 Score=28.09 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=38.0
Q ss_pred CHHHHHHHHhccCCCcEEE-EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Q 006044 93 DGFKLLEHIGLEMDLPVIM-MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (663)
Q Consensus 93 DG~ELL~~Ir~~~~IPVII-LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~I 146 (663)
-|++.+++|+.....|+.+ +..++..+.+..+.+.||+..++-....++....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 5889999998666677633 55556677888888999998777555445554444
No 212
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=41.00 E-value=1.5e+02 Score=30.51 Aligned_cols=68 Identities=18% Similarity=0.224 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPdm-DG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+..+..+.+.... ..+|++|+.--++ .| +++++++.....+|||+=-+-...+.+.++.+.||+..+.
T Consensus 142 ~~~~~~~~~~~~g--~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSFD--YGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhcC--CEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 4444555554432 4799999976443 33 7889999877789999887788888898999999998775
No 213
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.91 E-value=3.9e+02 Score=28.96 Aligned_cols=90 Identities=17% Similarity=0.110 Sum_probs=58.3
Q ss_pred EEEEEeCCHHHH--H--HHHHHHHh----CCC---eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc
Q 006044 35 RVLVVDDDITCL--R--ILEQMLRR----CLY---NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (663)
Q Consensus 35 RVLIVDDD~~~r--e--~L~~lL~~----~gy---~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~ 103 (663)
-|||=|.|.... - .+...+.+ ..+ ....+.+.+++.+.+.. .+|+|.+|= |+--++-+.+..
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn----~s~e~l~~av~~ 233 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDN----FSLDDLREGVEL 233 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECC----CCHHHHHHHHHH
Confidence 477777776543 1 24444432 332 23589999999998864 389999994 343344444432
Q ss_pred cCCCcEEEEecCCCHHHHHHHHhcCCCe
Q 006044 104 EMDLPVIMMSADGRVSAVMRGIRHGACD 131 (663)
Q Consensus 104 ~~~IPVIILSa~~d~e~v~kAl~~GA~d 131 (663)
.....+|-.|+.-..+.+.+....|++-
T Consensus 234 ~~~~~~leaSGgI~~~ni~~yA~tGVD~ 261 (281)
T PRK06543 234 VDGRAIVEASGNVNLNTVGAIASTGVDV 261 (281)
T ss_pred hCCCeEEEEECCCCHHHHHHHHhcCCCE
Confidence 2233367788888899998888888764
No 214
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=40.14 E-value=91 Score=32.46 Aligned_cols=62 Identities=23% Similarity=0.278 Sum_probs=42.9
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-cCCCceEEEEecCCC
Q 006044 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-RKGCFDVVLSDVHMP 90 (663)
Q Consensus 28 d~fP~giRVLIVDDD~~~re~L~~lL~~~gy--~V~tasng~eALelLre-~k~~pDLVILDI~MP 90 (663)
...|..-++.-||-++...+..++.+++.+. .|..... -+|++.+.. ....||+||+|..=+
T Consensus 79 ~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~~~~~fDliFIDadK~ 143 (219)
T COG4122 79 LALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRLLDGSFDLVFIDADKA 143 (219)
T ss_pred hhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhccCCCccEEEEeCChh
Confidence 3455344899999999999999999998865 3433331 344555443 234699999998543
No 215
>PLN02476 O-methyltransferase
Probab=40.10 E-value=1.2e+02 Score=32.58 Aligned_cols=59 Identities=15% Similarity=0.240 Sum_probs=43.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHc--CCCceEEEEecC
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRER--KGCFDVVLSDVH 88 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy~--V~-tasng~eALelLre~--k~~pDLVILDI~ 88 (663)
.|..-+|.-+|-++...+..+..+++.++. |. ...++.+.|..+... ...||+||+|..
T Consensus 140 l~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 140 LPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 444457999999999999999999988763 43 456777777665322 235999999975
No 216
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.03 E-value=3.1e+02 Score=29.92 Aligned_cols=103 Identities=23% Similarity=0.295 Sum_probs=61.0
Q ss_pred ccEEEEEe--CCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHHcCCCceEEEEecCCCC
Q 006044 33 GLRVLVVD--DDIT---CLRILEQMLRRCLYNVTTCSQAAVALDI----------------LRERKGCFDVVLSDVHMPD 91 (663)
Q Consensus 33 giRVLIVD--DD~~---~re~L~~lL~~~gy~V~tasng~eALel----------------Lre~k~~pDLVILDI~MPd 91 (663)
..+|+|+- +.+. ..+.+..+|...++.|.........+.. .......+|+||+ -+
T Consensus 5 ~~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lG 80 (306)
T PRK03372 5 SRRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LG 80 (306)
T ss_pred ccEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----Ec
Confidence 34588872 3333 3455666666678877765543322210 0111123677776 36
Q ss_pred CCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 92 MDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 92 mDG~ELL~~Ir--~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
.||- +|+..+ ...++||+-+- .|-.+||.- +..+++..++++++++.+
T Consensus 81 GDGT-~L~aar~~~~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 81 GDGT-ILRAAELARAADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRDY 130 (306)
T ss_pred CCHH-HHHHHHHhccCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCCc
Confidence 7882 344443 23578888654 377788885 778999999999887653
No 217
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.62 E-value=75 Score=39.63 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=50.9
Q ss_pred CceEEEEe-cCCCCCCHHHHHHHHhccCC--CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 79 CFDVVLSD-VHMPDMDGFKLLEHIGLEMD--LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 79 ~pDLVILD-I~MPdmDG~ELL~~Ir~~~~--IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
.+-|+|+| ++|-..+.++.+.++-+++. +.+|+.| .+...+...+...+.-|-.||++.+++...+++++..
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT--Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC--CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 47888888 77766666665544434433 4445444 3444566777878889999999999999999988765
No 218
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=39.56 E-value=82 Score=32.16 Aligned_cols=81 Identities=14% Similarity=0.119 Sum_probs=44.5
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 006044 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (663)
Q Consensus 60 V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s 138 (663)
|....+.+++++.++... .-.+=++.+.|-.-+.+++++.+++. ++ -+|=.-.--+.+.+.+|+++||. |++-|.-
T Consensus 13 Vir~~~~~~a~~~~~al~-~gGi~~iEiT~~t~~a~~~I~~l~~~~p~-~~vGAGTV~~~e~a~~a~~aGA~-FivSP~~ 89 (196)
T PF01081_consen 13 VIRGDDPEDAVPIAEALI-EGGIRAIEITLRTPNALEAIEALRKEFPD-LLVGAGTVLTAEQAEAAIAAGAQ-FIVSPGF 89 (196)
T ss_dssp EETTSSGGGHHHHHHHHH-HTT--EEEEETTSTTHHHHHHHHHHHHTT-SEEEEES--SHHHHHHHHHHT-S-EEEESS-
T ss_pred EEEcCCHHHHHHHHHHHH-HCCCCEEEEecCCccHHHHHHHHHHHCCC-CeeEEEeccCHHHHHHHHHcCCC-EEECCCC
Confidence 334445555555444310 01233456666666788999888643 44 33444555678899999999997 6666654
Q ss_pred HHHHH
Q 006044 139 EEELK 143 (663)
Q Consensus 139 ~eeLk 143 (663)
.+++.
T Consensus 90 ~~~v~ 94 (196)
T PF01081_consen 90 DPEVI 94 (196)
T ss_dssp -HHHH
T ss_pred CHHHH
Confidence 44443
No 219
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.56 E-value=2.2e+02 Score=29.98 Aligned_cols=94 Identities=15% Similarity=0.225 Sum_probs=60.3
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006044 34 LRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 34 iRVLIVDDD--~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVII 111 (663)
|++.|+..+ ....+.++..|.+.+..+....+.. ......|+||+ -+.||. +++.++.. ++||+-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc-CCCEEE
Confidence 455555333 3445566777777777666554422 11224788887 377884 55666544 889886
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+. .|-.+||. .+..+++..++++++++.+
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g~~ 96 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNWNF 96 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcCCc
Confidence 65 35567887 6788999999998876543
No 220
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=39.47 E-value=5.9e+02 Score=28.52 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=63.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hccCCCcEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVI 110 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~-V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~I-r~~~~IPVI 110 (663)
-+|..+|-++...+.+++-++..+.. + ....+....+. .....||+|++|- ++. ..+++..+ +...+--++
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~---~~~~~fDvIdlDP--fGs-~~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR---YRNRKFHVIDIDP--FGT-PAPFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH---HhCCCCCEEEeCC--CCC-cHHHHHHHHHhcccCCEE
Confidence 47999999999999998888765432 3 33444444443 3223499999996 443 23455443 333444578
Q ss_pred EEecCCCHHH----HHHHH-hcCCCeEEeCC-C-CHHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSA----VMRGI-RHGACDYLIKP-I-REEELKNIWQHVVRK 152 (663)
Q Consensus 111 ILSa~~d~e~----v~kAl-~~GA~dYLlKP-~-s~eeLk~~Iq~VLrk 152 (663)
.+|+.|.... ...++ +.|+. ..|. + ..--|+-++..+.+.
T Consensus 144 ~vTaTD~~~L~G~~~~~~~rkYga~--~~~~~~~~E~glRiLlg~i~r~ 190 (374)
T TIGR00308 144 LVTATDTSALCGNYPKSCLRKYGAN--PVKTESCHESALRLLLGFVKRT 190 (374)
T ss_pred EEEecccHHhcCCChHHHHHHhCCc--ccCCcchHHHHHHHHHHHHHHH
Confidence 8887665443 34455 44653 3343 2 223345555555543
No 221
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=39.46 E-value=1.3e+02 Score=30.17 Aligned_cols=67 Identities=15% Similarity=0.138 Sum_probs=44.5
Q ss_pred EEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe--CCCCHHHHHHHHHHH
Q 006044 83 VLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI--KPIREEELKNIWQHV 149 (663)
Q Consensus 83 VILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl--KP~s~eeLk~~Iq~V 149 (663)
-+.|...--...++.++.++...++||++...-.+...+..+++.||+..++ .-+..+++...++..
T Consensus 49 ~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 49 SVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 3444443334567888888776789999765445566788899999999873 223445666665554
No 222
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.27 E-value=1.8e+02 Score=31.61 Aligned_cols=90 Identities=16% Similarity=0.068 Sum_probs=57.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC----C-CeE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006044 35 RVLVVDDDITCLRILEQMLRRC----L-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~----g-y~V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IP 108 (663)
-|||=|.|....-.++..+++. . ..| ..+.+.+++.+.+.. .+|+|++|=.-| -++-+.++....-.
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmsp----e~l~~av~~~~~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTL----DMMREAVRVTAGRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCH----HHHHHHHHhhcCCe
Confidence 4777677665544444444321 1 223 578999999999864 389999994333 33333333222234
Q ss_pred EEEEecCCCHHHHHHHHhcCCCe
Q 006044 109 VIMMSADGRVSAVMRGIRHGACD 131 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~d 131 (663)
+|-.|+.-..+.+.+..+.|++-
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~ 273 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDR 273 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCE
Confidence 56678888888888888888864
No 223
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=39.21 E-value=4.3e+02 Score=29.68 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=58.8
Q ss_pred HHHHHHhCCCeEEE----ECCHHHHHHHHHHcCCCceEEEEecCC----CCCCHHHHHHHHhccCCCcEEEEecCCCHHH
Q 006044 49 LEQMLRRCLYNVTT----CSQAAVALDILRERKGCFDVVLSDVHM----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSA 120 (663)
Q Consensus 49 L~~lL~~~gy~V~t----asng~eALelLre~k~~pDLVILDI~M----PdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~ 120 (663)
+.+..++.+..+.. +.+..+.+..+.+. ..|.|.+..-. ....+++.+++++...++||++.-+- ..+.
T Consensus 99 ~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~--GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n 175 (430)
T PRK07028 99 AVRAARKYGVRLMADLINVPDPVKRAVELEEL--GVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAET 175 (430)
T ss_pred HHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc--CCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHH
Confidence 33444445544432 22333333333333 37888765321 12467888898876667888776654 5677
Q ss_pred HHHHHhcCCCeE-----EeCCCCHHHHHHHHHHHHHH
Q 006044 121 VMRGIRHGACDY-----LIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 121 v~kAl~~GA~dY-----LlKP~s~eeLk~~Iq~VLrk 152 (663)
+.++++.||+.+ |.+.-++.+..+.++..+++
T Consensus 176 ~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~ 212 (430)
T PRK07028 176 AAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS 212 (430)
T ss_pred HHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence 889999999965 44444555555555554443
No 224
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=39.16 E-value=2.4e+02 Score=29.29 Aligned_cols=54 Identities=22% Similarity=0.338 Sum_probs=36.5
Q ss_pred HHHHHHhccCCCcEEEEe-----cCCCHHHHHHHHhcCCCeEEeC--CCC-HHHHHHHHHHH
Q 006044 96 KLLEHIGLEMDLPVIMMS-----ADGRVSAVMRGIRHGACDYLIK--PIR-EEELKNIWQHV 149 (663)
Q Consensus 96 ELL~~Ir~~~~IPVIILS-----a~~d~e~v~kAl~~GA~dYLlK--P~s-~eeLk~~Iq~V 149 (663)
++++.++...++|+++|+ ..+....+.++.++|++.++.- |+. .+++...++.+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~ 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEII 125 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHH
Confidence 567777766788987664 3344455778889999999885 343 45666555554
No 225
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=38.81 E-value=2e+02 Score=30.72 Aligned_cols=115 Identities=22% Similarity=0.221 Sum_probs=72.9
Q ss_pred ccEEEEEeCCHHH-------HHHHHHHHHhCCCeEEEECCHHHHH-HHHHHcCCCceEEEEecCCCCCCHH-----HHHH
Q 006044 33 GLRVLVVDDDITC-------LRILEQMLRRCLYNVTTCSQAAVAL-DILRERKGCFDVVLSDVHMPDMDGF-----KLLE 99 (663)
Q Consensus 33 giRVLIVDDD~~~-------re~L~~lL~~~gy~V~tasng~eAL-elLre~k~~pDLVILDI~MPdmDG~-----ELL~ 99 (663)
.+|+=|+-|+... .+. .+.|-+.||.|..+.+..-.+ +.|++.. =..+|-+--|-.+|. ..++
T Consensus 100 wiKlEVi~d~~tLlPD~~etl~A-ae~Lv~eGF~VlPY~~dD~v~arrLee~G---caavMPl~aPIGSg~G~~n~~~l~ 175 (262)
T COG2022 100 WIKLEVIGDEKTLLPDPIETLKA-AEQLVKEGFVVLPYTTDDPVLARRLEEAG---CAAVMPLGAPIGSGLGLQNPYNLE 175 (262)
T ss_pred eEEEEEecCCcccCCChHHHHHH-HHHHHhCCCEEeeccCCCHHHHHHHHhcC---ceEeccccccccCCcCcCCHHHHH
Confidence 4677677665432 222 334445699997655433322 2333322 234555555544443 4566
Q ss_pred HHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC-----CCHHHHHHHHHHHHH
Q 006044 100 HIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-----IREEELKNIWQHVVR 151 (663)
Q Consensus 100 ~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP-----~s~eeLk~~Iq~VLr 151 (663)
.|+++.++|||+=.+-.....+..+++.|++..|+-- -++-.+.++..+++.
T Consensus 176 iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~ 232 (262)
T COG2022 176 IIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232 (262)
T ss_pred HHHHhCCCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHH
Confidence 7777789999999999999999999999999988753 345556666665543
No 226
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=38.81 E-value=35 Score=33.91 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=35.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD 86 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILD 86 (663)
|||||....+-..|.++|.+.++.+..+.+.+..++.+.... ||.||+-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~--~d~iils 50 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALK--PQKIVIS 50 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcC--CCEEEEc
Confidence 899999999999999999998888776665432234444333 7877763
No 227
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=38.78 E-value=2.3e+02 Score=31.22 Aligned_cols=63 Identities=11% Similarity=0.127 Sum_probs=43.1
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006044 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (663)
Q Consensus 34 iRVLIVDDD~~~r-----e~L~~lL~~~gy~V~tas---------ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~ 99 (663)
-|+|||-|..... +.+...|+..++.+..+. +..++++.+++.+ +|+||- +.+..-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFE--PDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHH
Confidence 4899998876544 677888887676665443 3557777777765 898885 45666666666
Q ss_pred HH
Q 006044 100 HI 101 (663)
Q Consensus 100 ~I 101 (663)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 55
No 228
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=38.63 E-value=3.6e+02 Score=27.42 Aligned_cols=75 Identities=19% Similarity=0.174 Sum_probs=55.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEEC-------CHHHHHHHHHHcCCCceEEEEecC-CC-CCCHHHHHHHHhccCC
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTTCS-------QAAVALDILRERKGCFDVVLSDVH-MP-DMDGFKLLEHIGLEMD 106 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tas-------ng~eALelLre~k~~pDLVILDI~-MP-dmDG~ELL~~Ir~~~~ 106 (663)
|||=|-|...++.++..-++.+-++...+ ++++.++++++.+++|=+|..|=. .. ..-|=+.++.+-..++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 45557788888999988888887776544 788999999988877777777753 22 2357788888877777
Q ss_pred CcEE
Q 006044 107 LPVI 110 (663)
Q Consensus 107 IPVI 110 (663)
+-|+
T Consensus 83 IeVL 86 (180)
T PF14097_consen 83 IEVL 86 (180)
T ss_pred ceEE
Confidence 6654
No 229
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=38.58 E-value=2e+02 Score=31.74 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=49.8
Q ss_pred ccEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHH
Q 006044 33 GLRVLVVDDDITC-----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLL 98 (663)
Q Consensus 33 giRVLIVDDD~~~-----re~L~~lL~~~gy~V~tas---------ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL 98 (663)
+-|+|||-|.... .+.+...|+..+..+..+. +..++++.+++.. +|.||- +.+..-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEK--VDFILA---VGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCChHHHHHH
Confidence 3589999776443 3567788887676665443 3456777777765 899875 3455556666
Q ss_pred HHHhc------------------cCCCcEEEEecC
Q 006044 99 EHIGL------------------EMDLPVIMMSAD 115 (663)
Q Consensus 99 ~~Ir~------------------~~~IPVIILSa~ 115 (663)
+.+.. .+.+|+|.+...
T Consensus 103 K~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 103 KAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred HHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 55421 245788887653
No 230
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=38.40 E-value=91 Score=38.43 Aligned_cols=72 Identities=18% Similarity=0.317 Sum_probs=50.6
Q ss_pred CceEEEEe-cCCCCCCHHHHHH-HHhccC-CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 79 CFDVVLSD-VHMPDMDGFKLLE-HIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 79 ~pDLVILD-I~MPdmDG~ELL~-~Ir~~~-~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
.+.|+|+| ++|-...+++.|. .|.+-+ .+.+|++| .+.+.+...++..+..|-.+++..++|...+..++++
T Consensus 120 ~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t--t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~ 194 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT--TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ 194 (824)
T ss_pred CceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe--CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH
Confidence 47888887 6665566776544 444433 44555555 3444577788888889999999999999988887754
No 231
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=38.34 E-value=3.3e+02 Score=25.25 Aligned_cols=109 Identities=19% Similarity=0.287 Sum_probs=66.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECC--HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQ--AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy--~V~tasn--g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IP 108 (663)
.++++|+.+.... ..+.......+. .+..... ..+..++++. .|++++=... +.-|..+++.+. ..+|
T Consensus 47 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~p 118 (172)
T PF00534_consen 47 NYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGCP 118 (172)
T ss_dssp TEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-E
T ss_pred CeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--cccc
Confidence 4577777733322 234444444332 3433333 3455666654 5777775554 555667777763 4567
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
||+ +. .....+.+..+..+++..+.+.+++.+.+.+++...
T Consensus 119 vI~-~~---~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 119 VIA-SD---IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEE-ES---STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eee-cc---ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 664 33 233456778888999999999999999999988653
No 232
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.08 E-value=2.2e+02 Score=29.29 Aligned_cols=60 Identities=8% Similarity=0.194 Sum_probs=37.8
Q ss_pred EEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHH
Q 006044 84 LSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144 (663)
Q Consensus 84 ILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~ 144 (663)
++.+.|-.-+.++.++++++..+--+|=.-.--+.+.+.+++++||. |++-|.-..++.+
T Consensus 32 ~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~ 91 (201)
T PRK06015 32 AIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLA 91 (201)
T ss_pred EEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 34444555567788888764332222334445578889999999997 7777765555543
No 233
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=37.97 E-value=4.2e+02 Score=26.33 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=60.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~g--y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
.++++|+.+.+. ...++..+...+ ..|......++..+.+.. .|++|.-... +.=|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~i~ps~~-e~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYAK----ASIFVLTSRF-EGFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHHh----CCEEEeCccc-cccCHHHHHHHH--cCCCEE
Confidence 345666654332 233333444332 233333333444444433 5777776544 223566666663 577887
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
+....... .+....+..+++.++.+.+++.+.+.+++.
T Consensus 281 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 281 SFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLME 318 (348)
T ss_pred EecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHc
Confidence 54322222 234456668899999999999999988764
No 234
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=37.93 E-value=1.7e+02 Score=30.03 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=51.2
Q ss_pred ECCHHHHHHHHHHcCCCce-EEEEecCCCC---CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 63 CSQAAVALDILRERKGCFD-VVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 63 asng~eALelLre~k~~pD-LVILDI~MPd---mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
..+..+..+.+.+.. +| |+++|+.--+ ..-+++++++++...+||++--+-.+.+.+.+.+..|++..+.
T Consensus 26 ~~d~~~~a~~~~~~G--~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~i 99 (243)
T cd04731 26 AGDPVELAKRYNEQG--ADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSI 99 (243)
T ss_pred CCCHHHHHHHHHHCC--CCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEE
Confidence 336777777776653 44 8888887421 1235778888777789999988888899999999999876554
No 235
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.89 E-value=3.4e+02 Score=29.32 Aligned_cols=105 Identities=22% Similarity=0.247 Sum_probs=61.6
Q ss_pred CCccEEEEE--eCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHH-----H--HHHcCCCceEEEEecCCCCCCHHHHH
Q 006044 31 PAGLRVLVV--DDDIT---CLRILEQMLRRCLYNVTTCSQAAVALD-----I--LRERKGCFDVVLSDVHMPDMDGFKLL 98 (663)
Q Consensus 31 P~giRVLIV--DDD~~---~re~L~~lL~~~gy~V~tasng~eALe-----l--Lre~k~~pDLVILDI~MPdmDG~ELL 98 (663)
|...+|.|+ .+.+. ..+.+.++|.+.++++.......+.+. . .......+|+||+ -+.||- ++
T Consensus 2 ~~~~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l 76 (295)
T PRK01231 2 PSFRNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGS-LL 76 (295)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHH-HH
Confidence 455568888 33333 344556666677777765443222111 0 0111123788876 267773 33
Q ss_pred HHHh--ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 99 EHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 99 ~~Ir--~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+.++ ...++||+-+.. |-.+||. .++.+++..+++.++++.+
T Consensus 77 ~~~~~~~~~~~Pvlgin~-------------G~lGFl~-~~~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 77 GAARALARHNVPVLGINR-------------GRLGFLT-DIRPDELEFKLAEVLDGHY 120 (295)
T ss_pred HHHHHhcCCCCCEEEEeC-------------Ccccccc-cCCHHHHHHHHHHHHcCCc
Confidence 3333 245788886653 5667774 6889999999999887653
No 236
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=37.72 E-value=39 Score=33.48 Aligned_cols=31 Identities=10% Similarity=0.200 Sum_probs=26.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCS 64 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tas 64 (663)
+||||||....+-..+.++|++.++.+.+..
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 6999999999888889999999888776555
No 237
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=37.56 E-value=2e+02 Score=28.65 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=34.1
Q ss_pred ceEEEEecCCCCCC-------HHHHHHHHhccC---CC-cEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 80 FDVVLSDVHMPDMD-------GFKLLEHIGLEM---DL-PVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 80 pDLVILDI~MPdmD-------G~ELL~~Ir~~~---~I-PVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
.|.|+++-.-|+.+ +++.+++++... .+ ++|++.+--..+.+.++.+.|++.++.-
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 67776665445443 334444444221 23 4566666667788888888999977554
No 238
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.51 E-value=30 Score=41.08 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=7.0
Q ss_pred cccCCcccccccc
Q 006044 631 KEEPNLEFVENAK 643 (663)
Q Consensus 631 ~~~~~~~~~~~~~ 643 (663)
.+||.|.+.|..|
T Consensus 280 ~~~~~iQi~~~CK 292 (1179)
T KOG3648|consen 280 EREPKIQVSELCK 292 (1179)
T ss_pred hcCchhhHHHHHH
Confidence 4556665555444
No 239
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.50 E-value=91 Score=33.18 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=40.5
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhc--c--CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 80 FDVVLSDVHMPDMDGFKLLEHIGL--E--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 80 pDLVILDI~MPdmDG~ELL~~Ir~--~--~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+|+||+ -+.||- +|+.++. . .++||+-+- .|-.+||. .++.+++..++++++.+.+
T Consensus 36 ~Dlvi~----iGGDGT-~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 36 PDIVIS----VGGDGT-LLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKDPG 95 (265)
T ss_pred CCEEEE----ECCcHH-HHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcCCc
Confidence 798887 377873 5555542 2 578877554 47888999 6888999999999887643
No 240
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=37.49 E-value=5.2e+02 Score=27.26 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=40.8
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeE------EeCCCCHHHHHHHHHHHHH
Q 006044 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY------LIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 95 ~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dY------LlKP~s~eeLk~~Iq~VLr 151 (663)
+++++++++..++|||..-.-.+.+.+.+++..||+.. +.-|.-..++++-+.+.+.
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~ 282 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLD 282 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHH
Confidence 57778887666899999888889999999999999753 3345444455544444444
No 241
>PRK13566 anthranilate synthase; Provisional
Probab=37.42 E-value=74 Score=38.62 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=49.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEec--CCCC-CCHHHHHHHHhccCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV--HMPD-MDGFKLLEHIGLEMDL 107 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI--~MPd-mDG~ELL~~Ir~~~~I 107 (663)
-.+++|||||....+...|.++|++.++.|.++..... .+.+... .||.||+-= ..|. .+-.++++.+. ..++
T Consensus 524 ~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~~--~~DgVVLsgGpgsp~d~~~~~lI~~a~-~~~i 599 (720)
T PRK13566 524 GEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDRV--NPDLVVLSPGPGRPSDFDCKATIDAAL-ARNL 599 (720)
T ss_pred CCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhhc--CCCEEEECCCCCChhhCCcHHHHHHHH-HCCC
Confidence 36789999999988999999999999998877665432 2233322 389877621 1121 12233444432 3468
Q ss_pred cEEEEe
Q 006044 108 PVIMMS 113 (663)
Q Consensus 108 PVIILS 113 (663)
||+-+-
T Consensus 600 PILGIC 605 (720)
T PRK13566 600 PIFGVC 605 (720)
T ss_pred cEEEEe
Confidence 887654
No 242
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=37.21 E-value=2.9e+02 Score=24.33 Aligned_cols=92 Identities=16% Similarity=0.051 Sum_probs=52.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECC-HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasn-g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
.+|++||.++...+.+ ...++.+....- -.+.|+.+.-. ..+.||+...- +..-+.++..+++ .+..++|+
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a~i~--~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERAGIE--KADAVVILTDD-DEENLLIALLARELNPDIRIIA 94 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHTTGG--CESEEEEESSS-HHHHHHHHHHHHHHTTTSEEEE
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhcCcc--ccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEEE
Confidence 5899999998764333 334566543221 13444444333 37888887652 2334555666665 56677776
Q ss_pred EecCCCHHHHHHHHhcCCCeEEe
Q 006044 112 MSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLl 134 (663)
... +.+......+.||+..+.
T Consensus 95 ~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 95 RVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp EES--SHHHHHHHHHTT-SEEEE
T ss_pred EEC--CHHHHHHHHHCCcCEEEC
Confidence 654 444556666788876553
No 243
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=36.92 E-value=75 Score=38.05 Aligned_cols=103 Identities=22% Similarity=0.262 Sum_probs=64.6
Q ss_pred hhHHHHHHHcCCC---CCCccccccccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCC
Q 006044 2 AALQRIVQSSGGS---GYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKG 78 (663)
Q Consensus 2 ai~~~~v~~mGGs---g~gs~~~~dl~~~d~fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~ 78 (663)
+..+|+++.||+- ..|-+.+||- .--..-||-..-|--..|+.+..-+.. .|.|.....+ +++.
T Consensus 110 slA~RVAeE~~~~lG~~VGY~IRFed----~ts~~TrikymTDG~LLRE~l~Dp~Ls-kYsvIIlDEA-------HERs- 176 (674)
T KOG0922|consen 110 SLAKRVAEEMGCQLGEEVGYTIRFED----STSKDTRIKYMTDGMLLREILKDPLLS-KYSVIILDEA-------HERS- 176 (674)
T ss_pred HHHHHHHHHhCCCcCceeeeEEEecc----cCCCceeEEEecchHHHHHHhcCCccc-cccEEEEech-------hhhh-
Confidence 5678999999983 4455555544 334467888889988777776555433 3544443221 1111
Q ss_pred CceEEEEecCCCCCCHHHHHHHH-hccCCCcEEEEecCCCHHHHHHHHhc
Q 006044 79 CFDVVLSDVHMPDMDGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRH 127 (663)
Q Consensus 79 ~pDLVILDI~MPdmDG~ELL~~I-r~~~~IPVIILSa~~d~e~v~kAl~~ 127 (663)
+-+|+ -+.++++| +..+++++|++||.-+.+...+.|..
T Consensus 177 ----l~TDi------LlGlLKki~~~R~~LklIimSATlda~kfS~yF~~ 216 (674)
T KOG0922|consen 177 ----LHTDI------LLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNN 216 (674)
T ss_pred ----hHHHH------HHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcC
Confidence 11111 24567766 56678899999998888888777765
No 244
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.76 E-value=3.8e+02 Score=27.76 Aligned_cols=88 Identities=6% Similarity=-0.017 Sum_probs=51.0
Q ss_pred HHHHHHHHHhCCCeEEEECCH---HHHHHHHHHcCCCceEEEEecCCCCC------CHHHHHHHHhccC-CCcEEEEecC
Q 006044 46 LRILEQMLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDM------DGFKLLEHIGLEM-DLPVIMMSAD 115 (663)
Q Consensus 46 re~L~~lL~~~gy~V~tasng---~eALelLre~k~~pDLVILDI~MPdm------DG~ELL~~Ir~~~-~IPVIILSa~ 115 (663)
...+...+++.|..+..+-+. .+.++.+.... ..++++ -.+|+- +-.+.++++|+.. +.||++=.+-
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~--~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI 194 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLS--PLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGL 194 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCc
Confidence 344556666667655433322 34445444333 567777 445542 2234556666433 4676544444
Q ss_pred CCHHHHHHHHhcCCCeEEeCC
Q 006044 116 GRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 116 ~d~e~v~kAl~~GA~dYLlKP 136 (663)
.+.+.+.++.++||+.++.=.
T Consensus 195 ~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 195 DSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CCHHHHHHHHHcCCCEEEECH
Confidence 477888888999999998854
No 245
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=36.51 E-value=1.3e+02 Score=29.58 Aligned_cols=67 Identities=10% Similarity=0.038 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCCC-------HHHHHHHHhcc-----CCCcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPDMD-------GFKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPdmD-------G~ELL~~Ir~~-----~~IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
+..+.++.+... .|.|+++-.-|+.+ +++.++++++. +.+|+++. +--..+.+.++++.||+.+
T Consensus 115 t~~e~~~~~~~~---~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~-GGI~~env~~l~~~gad~i 190 (210)
T TIGR01163 115 TPLEFLEYVLPD---VDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD-GGVNDDNARELAEAGADIL 190 (210)
T ss_pred CCHHHHHHHHhh---CCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE-CCcCHHHHHHHHHcCCCEE
Confidence 445555555332 57777765444433 33444445421 23565443 3445678888899999987
Q ss_pred EeC
Q 006044 133 LIK 135 (663)
Q Consensus 133 LlK 135 (663)
+.-
T Consensus 191 ivg 193 (210)
T TIGR01163 191 VAG 193 (210)
T ss_pred EEC
Confidence 664
No 246
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=36.42 E-value=3.2e+02 Score=29.56 Aligned_cols=75 Identities=19% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHH
Q 006044 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNI 145 (663)
Q Consensus 66 g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~ 145 (663)
.++..+.+.. .|+.++ ...++.-|+.+++.+. ..+|||.- ... ...+.+..|..+++..|.+.++|.+.
T Consensus 291 ~~~~~~~l~~----adv~v~-~s~~e~~~~~llEAmA--~G~PVIas-~~~---g~~e~i~~~~~G~lv~~~d~~~la~~ 359 (396)
T cd03818 291 YDQYLALLQV----SDVHVY-LTYPFVLSWSLLEAMA--CGCLVVGS-DTA---PVREVITDGENGLLVDFFDPDALAAA 359 (396)
T ss_pred HHHHHHHHHh----CcEEEE-cCcccccchHHHHHHH--CCCCEEEc-CCC---CchhhcccCCceEEcCCCCHHHHHHH
Confidence 3455555543 466554 2345555666777663 56788763 222 23455677889999999999999999
Q ss_pred HHHHHH
Q 006044 146 WQHVVR 151 (663)
Q Consensus 146 Iq~VLr 151 (663)
+..++.
T Consensus 360 i~~ll~ 365 (396)
T cd03818 360 VIELLD 365 (396)
T ss_pred HHHHHh
Confidence 988875
No 247
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=36.03 E-value=2.9e+02 Score=28.39 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=48.9
Q ss_pred eEEEECCHHHHHHHHHHc-CCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 59 NVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 59 ~V~tasng~eALelLre~-k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
-|....+.+++++.++.. ...+++|=+ .|-.-+.++.++++++. +++ +|-.-.--+.+.+.+++++||. |++-|
T Consensus 12 aVlr~~~~e~a~~~~~al~~~Gi~~iEi--t~~t~~a~~~i~~l~~~~~~~-~vGAGTVl~~~~a~~a~~aGA~-FivsP 87 (204)
T TIGR01182 12 PVIRIDDVDDALPLAKALIEGGLRVLEV--TLRTPVALDAIRLLRKEVPDA-LIGAGTVLNPEQLRQAVDAGAQ-FIVSP 87 (204)
T ss_pred EEEecCCHHHHHHHHHHHHHcCCCEEEE--eCCCccHHHHHHHHHHHCCCC-EEEEEeCCCHHHHHHHHHcCCC-EEECC
Confidence 345566667766655532 122454433 34445688888888754 343 2333445577889999999997 66777
Q ss_pred CCHHHHH
Q 006044 137 IREEELK 143 (663)
Q Consensus 137 ~s~eeLk 143 (663)
....++.
T Consensus 88 ~~~~~v~ 94 (204)
T TIGR01182 88 GLTPELA 94 (204)
T ss_pred CCCHHHH
Confidence 5544443
No 248
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.92 E-value=2.3e+02 Score=30.88 Aligned_cols=101 Identities=14% Similarity=0.220 Sum_probs=60.7
Q ss_pred EEEEE--eCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHH----------------HHHcCCCceEEEEecCCCCCC
Q 006044 35 RVLVV--DDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDI----------------LRERKGCFDVVLSDVHMPDMD 93 (663)
Q Consensus 35 RVLIV--DDD~~---~re~L~~lL~~~gy~V~tasng~eALel----------------Lre~k~~pDLVILDI~MPdmD 93 (663)
+|.|+ .+.+. ....+.++|.+.++.+....+..+.+.. .......+|+||+ -+.|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGD 78 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGD 78 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCc
Confidence 56776 33333 3455666676778877654433222210 0111113677776 3678
Q ss_pred HHHHHHHHhc--cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 94 GFKLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 94 G~ELL~~Ir~--~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
| .+|+..+. ..++||+-+. .|-.+||.- +..+++...+++++++.+
T Consensus 79 G-TlL~aar~~~~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 79 G-TVLSAARQLAPCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred H-HHHHHHHHhcCCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCCc
Confidence 8 46666553 3578888664 366788885 678999999999887653
No 249
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=35.84 E-value=96 Score=33.75 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=44.8
Q ss_pred CHHHHHHHHhccCCCcEE--EEecCCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006044 93 DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (663)
Q Consensus 93 DG~ELL~~Ir~~~~IPVI--ILSa~~d~e~v~kAl~~GA~dYLl-----KP~s~eeLk~~Iq~VLrk 152 (663)
-++++++++++...+||| ....-...+.+..++++||+.+++ |.-++.+....+...+..
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~ 256 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTH 256 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHH
Confidence 478899998777789998 566666899999999999998754 444666666666655543
No 250
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=35.45 E-value=1.3e+02 Score=29.54 Aligned_cols=55 Identities=15% Similarity=0.137 Sum_probs=34.4
Q ss_pred ceEEEEecCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 80 FDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 80 pDLVILDI~MPdmDG-------~ELL~~Ir~~-----~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
.|.|+++-..|+.+| ++.++++++. +++|+++.- --..+.+.++.+.||+.++.=
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~G-GI~~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDG-GINLETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEEC-CCCHHHHHHHHHcCCCEEEEC
Confidence 687777665555433 3445555432 246765544 444578888999999988764
No 251
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.21 E-value=1.4e+02 Score=32.19 Aligned_cols=102 Identities=22% Similarity=0.241 Sum_probs=59.8
Q ss_pred cEEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHHHHH-------HHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006044 34 LRVLVV--DDDITCL---RILEQMLRRCLYNVTTCSQAAVALD-------ILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 34 iRVLIV--DDD~~~r---e~L~~lL~~~gy~V~tasng~eALe-------lLre~k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
.+|+|+ -+.+... ..+.++|.+.++.+.........+. ........+|+||+ -+.||- +++..
T Consensus 6 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDGT-~L~aa 80 (292)
T PRK03378 6 KCIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDGN-MLGAA 80 (292)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcHH-HHHHH
Confidence 358887 3334444 4555666666777765443332221 00111123688776 367873 44544
Q ss_pred hc--cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 102 GL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 102 r~--~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+. ..++||+-+- .|-.+||. .+..+++..++++++.+.+
T Consensus 81 ~~~~~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 81 RVLARYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred HHhcCCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcCCc
Confidence 42 3467887554 35667877 6778999999999876653
No 252
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.15 E-value=2.2e+02 Score=30.82 Aligned_cols=90 Identities=18% Similarity=0.065 Sum_probs=56.5
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--C-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006044 36 VLVVDDDITCLRILEQMLRR----CL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~----~g--y-~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IP 108 (663)
|||=|.|..+.-.+...+++ .. . ....+.+.+++.+.++. .+|+|.+|= |+--++-+.+......-
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn----~s~e~l~~av~~~~~~~ 239 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDN----MTPDTLREAVAIVAGRA 239 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCC----CCHHHHHHHHHHhCCCc
Confidence 56655554443334444432 22 2 33589999999999864 389999994 33333444443222223
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeE
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dY 132 (663)
++..|+--+.+.+.+..+.|++-.
T Consensus 240 ~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 240 ITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred eEEEECCCCHHHHHHHHhcCCCEE
Confidence 477888888898988889998643
No 253
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=34.77 E-value=2.3e+02 Score=27.83 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=48.7
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEecCCCCC-------CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPDM-------DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 61 ~tasng~eALelLre~k~~pDLVILDI~MPdm-------DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
..|.+.+++.++.+. .+|.|++---.|.. -|++.++++.....+||+.+-+-+ .+.+.+..+.||++.-
T Consensus 100 ~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 478898886665532 37999988765543 389999998877789999987654 4456678899998864
No 254
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=34.75 E-value=1.3e+02 Score=29.04 Aligned_cols=54 Identities=28% Similarity=0.312 Sum_probs=43.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC----CHHHHHHHHHHcCCCceEEEEecCCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCS----QAAVALDILRERKGCFDVVLSDVHMPD 91 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tas----ng~eALelLre~k~~pDLVILDI~MPd 91 (663)
..|.+|+|+.......+-|..+|.+.+..|+.|. +..++ +++ -|+|++-..-+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~~----ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VHD----ADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hhh----CCEEEEecCCCC
Confidence 3577999999999999999999999999999887 44333 322 699999887664
No 255
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=34.72 E-value=75 Score=32.37 Aligned_cols=53 Identities=30% Similarity=0.345 Sum_probs=38.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeE-EEECCHHHHHHHHHHcCCCceEEEEec
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCL--YNV-TTCSQAAVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~g--y~V-~tasng~eALelLre~k~~pDLVILDI 87 (663)
-++++||-|......|++-++..+ -.+ ....++..+|..+... ..+|+|++|-
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 479999999999999999888765 222 3444555666655543 2499999995
No 256
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.70 E-value=2.6e+02 Score=29.94 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=58.6
Q ss_pred cEEEEEe--CCH---HHHHHHHHHHHhCCCeEEEECCHHHHHHHH------HHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006044 34 LRVLVVD--DDI---TCLRILEQMLRRCLYNVTTCSQAAVALDIL------RERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (663)
Q Consensus 34 iRVLIVD--DD~---~~re~L~~lL~~~gy~V~tasng~eALelL------re~k~~pDLVILDI~MPdmDG~ELL~~Ir 102 (663)
|||.|+- +.+ ...+.+.++|+..++++.......+.+... ......+|+||. -+.||. +++.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGT-lL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGT-ILRIEH 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHH-HHHHHH
Confidence 5778872 222 345556666767788776653322211100 000113787776 367874 333333
Q ss_pred -ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 103 -LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 103 -~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
...++||+.+.. |-.+|+. .+..+++..++.+++++.+
T Consensus 76 ~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~~ 114 (277)
T PRK03708 76 KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGDY 114 (277)
T ss_pred hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCCc
Confidence 234789887764 4446666 6778999999998876653
No 257
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=34.64 E-value=2.5e+02 Score=30.83 Aligned_cols=96 Identities=15% Similarity=0.067 Sum_probs=56.7
Q ss_pred EEEEeCCHHHHHHHHHHHH-------hCCC---eEEEECCHHHHHHHHH---HcCCCceEEEEecC--CCC---CCHHHH
Q 006044 36 VLVVDDDITCLRILEQMLR-------RCLY---NVTTCSQAAVALDILR---ERKGCFDVVLSDVH--MPD---MDGFKL 97 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~-------~~gy---~V~tasng~eALelLr---e~k~~pDLVILDI~--MPd---mDG~EL 97 (663)
|||=|.|....-.+...++ ...+ ....+.+.+++.+.+. ..+..+|+|++|=. -|+ .+--++
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l 252 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSML 252 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHH
Confidence 7776666544333333332 2222 2357899999999887 11124899999954 121 033333
Q ss_pred HHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCe
Q 006044 98 LEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACD 131 (663)
Q Consensus 98 L~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~d 131 (663)
-+.+........|-.|+--..+.+.+....|++-
T Consensus 253 ~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~ 286 (308)
T PLN02716 253 KEAVELINGRFETEASGNVTLDTVHKIGQTGVTY 286 (308)
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCE
Confidence 3333322223347788888888888888888864
No 258
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.46 E-value=3.4e+02 Score=27.12 Aligned_cols=86 Identities=10% Similarity=0.071 Sum_probs=52.2
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 57 gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
-.-|....+.+++++.++..- .-.+=++.+.+...+..++++.+++....-.+-...--..+.+..|++.||+..+.--
T Consensus 14 ~~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~ 92 (187)
T PRK07455 14 AIAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPH 92 (187)
T ss_pred EEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCC
Confidence 345667788888888776531 1234466677777888898888864332211111111123677889999998666655
Q ss_pred CCHHHHH
Q 006044 137 IREEELK 143 (663)
Q Consensus 137 ~s~eeLk 143 (663)
++.+.+.
T Consensus 93 ~~~~~~~ 99 (187)
T PRK07455 93 VDPELIE 99 (187)
T ss_pred CCHHHHH
Confidence 6655443
No 259
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=34.21 E-value=6.8e+02 Score=27.67 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=59.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEE--ECCHHHHHHHHHHcCCCceEEEEecCCC---CCCH--HHHHHHHhcc
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLY--NVTT--CSQAAVALDILRERKGCFDVVLSDVHMP---DMDG--FKLLEHIGLE 104 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy--~V~t--asng~eALelLre~k~~pDLVILDI~MP---dmDG--~ELL~~Ir~~ 104 (663)
+++.||-|-+. ++.+++++++.+. .|.. .-+.++..+.+.. .|+.++=.... +.+| ..+++.+.
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma-- 326 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA-- 326 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh--
Confidence 34555554432 3444555544332 2222 1233444444432 46666532211 1233 44566653
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 105 ~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
..+|||.-. .. .+.+.++.|..+++..|-+.++|.+++..++.
T Consensus 327 ~G~PVI~t~-~~---g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVSTL-HS---GIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEEeC-CC---CchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 467887632 22 24456778999999999999999999988765
No 260
>PRK05637 anthranilate synthase component II; Provisional
Probab=34.20 E-value=69 Score=32.65 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=35.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVIL 85 (663)
-||||||...-+...|..+|++.++.+..+..... ++.+... .||.||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~~--~~~~iIl 50 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILAA--NPDLICL 50 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHhc--CCCEEEE
Confidence 48999999999999999999998887766554322 2333332 3787777
No 261
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=34.13 E-value=2.9e+02 Score=30.02 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=52.4
Q ss_pred HHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEecC-----CC-CC-CHHHHHHHHhccCCCcEEEEecCCCHHHHH
Q 006044 51 QMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVH-----MP-DM-DGFKLLEHIGLEMDLPVIMMSADGRVSAVM 122 (663)
Q Consensus 51 ~lL~~~gy~-V~tasng~eALelLre~k~~pDLVILDI~-----MP-dm-DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~ 122 (663)
+.++..+.. +..+++.++|...++.. +|.|++-=. .. +. +-+.|+..++...++|||.--+-.+...+.
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~~~G---~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ia 206 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAAKAG---ADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIA 206 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHHHTT----SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHH
T ss_pred HHHHHcCCccccccCCHHHHHHhhhcC---CCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHH
Confidence 334455544 45899999998877643 898887621 11 22 357777888777789999977778888899
Q ss_pred HHHhcCCCeEEe
Q 006044 123 RGIRHGACDYLI 134 (663)
Q Consensus 123 kAl~~GA~dYLl 134 (663)
.++.+||++...
T Consensus 207 aal~lGA~gV~~ 218 (330)
T PF03060_consen 207 AALALGADGVQM 218 (330)
T ss_dssp HHHHCT-SEEEE
T ss_pred HHHHcCCCEeec
Confidence 999999998765
No 262
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=33.83 E-value=3.2e+02 Score=31.14 Aligned_cols=99 Identities=14% Similarity=0.255 Sum_probs=60.7
Q ss_pred CccEEEEEeC---CHH-HHHHHHHHHHhC-CCe--EEEECCHHHHHHHHHHcCCCceEEEEecCCCC------------C
Q 006044 32 AGLRVLVVDD---DIT-CLRILEQMLRRC-LYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (663)
Q Consensus 32 ~giRVLIVDD---D~~-~re~L~~lL~~~-gy~--V~tasng~eALelLre~k~~pDLVILDI~MPd------------m 92 (663)
.+..++.||- +.. ..+.++.+-+.+ ... +..+.+.++|..++... .|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aG---ad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAG---ADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhC---CCEEEECCC-CCcCCccceecCCCc
Confidence 4678888887 433 333344433332 222 33677888888877642 687754321 11 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 93 DG~ELL~~Ir---~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
--+.++..+. ...++|||.=-+-.....+.+|+.+||+....
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 1234444432 23578988877788889999999999998765
No 263
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=33.78 E-value=3.3e+02 Score=30.54 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=44.1
Q ss_pred ceEEEEecCCCCCCHHH-HHHHHhccCCCcEEEE-ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 80 FDVVLSDVHMPDMDGFK-LLEHIGLEMDLPVIMM-SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 80 pDLVILDI~MPdmDG~E-LL~~Ir~~~~IPVIIL-Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
.|.+|++..-+..==+| ++..+. .....||.. ....+...+...++.|+++.+++|-++.+++++...+-
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~ 168 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLK 168 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHh
Confidence 46666655433221122 333332 234445543 33455667778899999999999999999998877653
No 264
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=33.53 E-value=2.6e+02 Score=27.41 Aligned_cols=76 Identities=14% Similarity=0.245 Sum_probs=51.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECC-------HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQ-------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~--gy~V~tasn-------g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir 102 (663)
.+.+|.++-..+...+.+...|++. +..+..+.+ .++.++.+.+.. ||+|++-+-+|... .++.+.+
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~--pdiv~vglG~PkQE--~~~~~~~ 122 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG--PDIVFVGLGAPKQE--RWIARHR 122 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC--CCEEEEECCCCHHH--HHHHHHH
Confidence 4579999999999999888888875 344443332 345555666554 99999999998754 3455555
Q ss_pred ccCCCcEEE
Q 006044 103 LEMDLPVIM 111 (663)
Q Consensus 103 ~~~~IPVII 111 (663)
.....+|++
T Consensus 123 ~~l~~~v~i 131 (172)
T PF03808_consen 123 QRLPAGVII 131 (172)
T ss_pred HHCCCCEEE
Confidence 555556443
No 265
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.39 E-value=3.8e+02 Score=27.70 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecC-CC-C-CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 64 SQAAVALDILRERKGCFDVVLSDVH-MP-D-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 64 sng~eALelLre~k~~pDLVILDI~-MP-d-mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+..+..+.+.+. .-.|+++|++ +- + ..-+++++++.....+||++=-+-.+.+.+.+++..|++..++
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~viv 101 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVII 101 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 4677777766653 1348888886 32 2 1358899999777788999866777888899999999998766
No 266
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=33.04 E-value=4.6e+02 Score=27.99 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=43.0
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 80 pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
.|++++--. .+.=|+.+++.+. ..+|||..-.... ..+.+..|..+++..|-+.++|.+++..++..
T Consensus 258 ~d~~v~~s~-~Egf~~~~lEAma--~G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~ 324 (359)
T PRK09922 258 VSALLLTSK-FEGFPMTLLEAMS--YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISG 324 (359)
T ss_pred CcEEEECCc-ccCcChHHHHHHH--cCCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhC
Confidence 355554222 1223556666653 4678875321222 34566778899999999999999999987654
No 267
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=32.98 E-value=1.9e+02 Score=32.28 Aligned_cols=68 Identities=13% Similarity=-0.029 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCceEEEEecCCCCCC-HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 68 VALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 68 eALelLre~k~~pDLVILDI~MPdmD-G~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
+-++.|.+....+|+|++|+---... -++.+++||....-+.|+--.-...+.+..++++||+...+=
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 33444443322489999999654433 467788887654334444443667888999999999987644
No 268
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=32.82 E-value=2.5e+02 Score=31.40 Aligned_cols=78 Identities=18% Similarity=0.098 Sum_probs=52.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe-E-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH-HhccCCCcEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYN-V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH-IGLEMDLPVI 110 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~-V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~-Ir~~~~IPVI 110 (663)
-+|..+|-++...+.+++-++..+.. + ....+..+.+.. . ..||+|++|- |+ .+.+++.. ++....--+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~--~--~~fD~V~lDP--~G-s~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE--E--RKFDVVDIDP--FG-SPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh--c--CCCCEEEECC--CC-CcHHHHHHHHHHhcCCCEE
Confidence 36999999999999999888765432 2 345555554432 2 2499999996 43 44577766 5544455788
Q ss_pred EEecCCCH
Q 006044 111 MMSADGRV 118 (663)
Q Consensus 111 ILSa~~d~ 118 (663)
.+|+.|-.
T Consensus 155 yvSAtD~~ 162 (382)
T PRK04338 155 CVTATDTA 162 (382)
T ss_pred EEEecCch
Confidence 88876654
No 269
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=32.79 E-value=51 Score=34.40 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=39.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--C---CeEE-EECCHHHHHHHHHHcCC-CceEEEEecCCCCCCH
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRC--L---YNVT-TCSQAAVALDILRERKG-CFDVVLSDVHMPDMDG 94 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~--g---y~V~-tasng~eALelLre~k~-~pDLVILDI~MPdmDG 94 (663)
...+|-+||=|+.+.+..++++... . -++. ...++..-++ +... .||+||+|..-|...+
T Consensus 99 ~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~---~~~~~~yDvIi~D~~dp~~~~ 165 (246)
T PF01564_consen 99 PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK---ETQEEKYDVIIVDLTDPDGPA 165 (246)
T ss_dssp T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH---TSSST-EEEEEEESSSTTSCG
T ss_pred CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH---hccCCcccEEEEeCCCCCCCc
Confidence 3358999999999999999988642 1 1232 5566555554 4333 5999999998776443
No 270
>PRK05670 anthranilate synthase component II; Provisional
Probab=32.74 E-value=56 Score=32.31 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=34.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVIL 85 (663)
|||||-...+-..+.++|++.++.+..........+.+.... ||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~--~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALN--PDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCC--CCEEEE
Confidence 899999999999999999999888766544321222233332 787776
No 271
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=32.51 E-value=3.8e+02 Score=31.70 Aligned_cols=97 Identities=16% Similarity=0.125 Sum_probs=67.4
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEecCCCC-----CCHHHHHHHHh---ccCCCcEEEEecCCCH
Q 006044 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (663)
Q Consensus 49 L~~lL~~~gy~V~t--asng~eALelLre~k~~pDLVILDI~MPd-----mDG~ELL~~Ir---~~~~IPVIILSa~~d~ 118 (663)
....|+..|+.+.. +.++...+..+.... +|.|-+|-.+-. .....+++.|. ...++.|| ..+-++.
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l~--~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe~~ 759 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRLVSLP--VTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVETK 759 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHHhhCC--CCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCCCH
Confidence 34456777888754 667778888887765 999999975421 12344555552 34455554 5667777
Q ss_pred HHHHHHHhcCCC----eEEeCCCCHHHHHHHHHH
Q 006044 119 SAVMRGIRHGAC----DYLIKPIREEELKNIWQH 148 (663)
Q Consensus 119 e~v~kAl~~GA~----dYLlKP~s~eeLk~~Iq~ 148 (663)
+....+.+.|++ .|+.||...++|...++.
T Consensus 760 ~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 760 EQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 778888899997 378899999999875543
No 272
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=32.50 E-value=2.1e+02 Score=31.46 Aligned_cols=63 Identities=16% Similarity=0.219 Sum_probs=41.6
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006044 34 LRVLVVDDDIT-----CLRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (663)
Q Consensus 34 iRVLIVDDD~~-----~re~L~~lL~~~gy~V~ta---------sng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~ 99 (663)
-|+|||-|... ..+.++..|++.+.++..+ .+..++.+.+++.. +|+||- ..+..-+++.+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEG--CDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 48999987654 3456777787766555443 34557777777765 999885 34656666666
Q ss_pred HH
Q 006044 100 HI 101 (663)
Q Consensus 100 ~I 101 (663)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 55
No 273
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=32.48 E-value=4.2e+02 Score=27.62 Aligned_cols=51 Identities=18% Similarity=0.151 Sum_probs=33.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEec
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI 87 (663)
.+|..+|-++...+..++-+...+..+. ..+..+.+.... ...+|+||+|-
T Consensus 111 ~~v~~vDis~~al~~A~~N~~~~~~~~~-~~D~~~~l~~~~--~~~fDlVv~NP 161 (251)
T TIGR03704 111 IELHAADIDPAAVRCARRNLADAGGTVH-EGDLYDALPTAL--RGRVDILAANA 161 (251)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCEEE-Eeechhhcchhc--CCCEeEEEECC
Confidence 5899999999998888887776654443 334333332111 13499999984
No 274
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=32.36 E-value=2.2e+02 Score=31.00 Aligned_cols=55 Identities=22% Similarity=0.209 Sum_probs=30.3
Q ss_pred CCccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHHcCCCceEEEEec
Q 006044 31 PAGLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 31 P~giRVLIVDDD~~~r---e~L~~lL~~~gy~V~tas---ng----~eALelLre~k~~pDLVILDI 87 (663)
+.+.+|+|++-|..-. +.+..+-...+..+.... +. .+++...... .+|+||+|.
T Consensus 140 ~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~--~~D~ViIDT 204 (318)
T PRK10416 140 AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKAR--GIDVLIIDT 204 (318)
T ss_pred hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 3467999999886322 233334444454444332 22 2334333333 499999998
No 275
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=32.05 E-value=3.1e+02 Score=32.17 Aligned_cols=57 Identities=18% Similarity=0.333 Sum_probs=40.0
Q ss_pred CceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 79 CFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 79 ~pDLVILDI~MPdmDG~ELL~~Ir~--~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
.+|+||+ -+.||- +|+..+. ...+||+-+ ..|-.+||. ++..+++..++..++++.+
T Consensus 262 ~~DlVIs----iGGDGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFLt-~i~~~e~~~~Le~il~G~y 320 (508)
T PLN02935 262 KVDLVIT----LGGDGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFMT-PFHSEQYRDCLDAILKGPI 320 (508)
T ss_pred CCCEEEE----ECCcHH-HHHHHHHhccCCCcEEEE-------------eCCCcceec-ccCHHHHHHHHHHHHcCCc
Confidence 3677776 367874 5555542 346787744 467888975 7899999999999887643
No 276
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=31.92 E-value=1.3e+02 Score=33.04 Aligned_cols=64 Identities=25% Similarity=0.391 Sum_probs=45.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCC---eE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006044 35 RVLVVDDDITCLRILEQMLRR--CLY---NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~--~gy---~V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~ 100 (663)
.|+++|-|..+.+.=+.++.. ++| +| ....+|...++.+.++. +|+||+|+.=|.+.+..+-.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~--~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP--FDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC--ceEEEEecCCccchHHHHHHH
Confidence 477888777777776667664 344 23 24448888888776554 999999999999888766543
No 277
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=31.91 E-value=2.9e+02 Score=31.38 Aligned_cols=123 Identities=19% Similarity=0.253 Sum_probs=69.6
Q ss_pred HHHHHHcCC-------CCCCccccccccCCCCCCCccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHH
Q 006044 5 QRIVQSSGG-------SGYGSSRAADVAVPDQFPAGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCS--QAAVALDILR 74 (663)
Q Consensus 5 ~~~v~~mGG-------sg~gs~~~~dl~~~d~fP~giRVLIVDDD-~~~re~L~~lL~~~gy~V~tas--ng~eALelLr 74 (663)
++++..=|| ||+++....-+.+ ..+|=+||+.+|- --.+..+..++.+.+.+|..+. +..+.++.+.
T Consensus 70 ~~~a~LEg~~~~~afsSGmaAI~~~~l~l---l~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~ 146 (396)
T COG0626 70 EALAELEGGEDAFAFSSGMAAISTALLAL---LKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIK 146 (396)
T ss_pred HHHHHhhCCCcEEEecCcHHHHHHHHHHh---cCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhc
Confidence 345555566 3555555543433 2336789998883 4567788888989888887665 4445555554
Q ss_pred HcCCCceEEEEecC-CCCCCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 75 ERKGCFDVVLSDVH-MPDMDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 75 e~k~~pDLVILDI~-MPdmDG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
. ...++|+++-- -|-|.- +..+.++..... .++++=..--..+..+.+++||+=.+
T Consensus 147 ~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 147 E--PNTKLVFLETPSNPLLEVPDIPAIARLAKAYG-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred c--cCceEEEEeCCCCcccccccHHHHHHHHHhcC-CEEEEECCcccccccChhhcCCCEEE
Confidence 3 13899999862 122222 223333322233 33333322233455677888876443
No 278
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=31.90 E-value=4.4e+02 Score=27.73 Aligned_cols=104 Identities=14% Similarity=0.102 Sum_probs=58.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeE-EEEC-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CC
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCL--YNV-TTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MD 106 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~g--y~V-~tas-ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~--~~ 106 (663)
.+||.||----.........+.... ..+ ..++ +.+.|.+..++.. +.-+..| .+.+-.. .+
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~--~~~~~~~-----------~~~ll~~~~iD 69 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG--IAKAYTD-----------LEELLADPDID 69 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC--CCcccCC-----------HHHHhcCCCCC
Confidence 5788888766555444444444432 233 3333 3334444443332 1112222 2222122 34
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHH
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~--s~eeLk~~Iq~V 149 (663)
+-+|......-.+.+.+|+++|..=|+-||+ +.+|..++++.+
T Consensus 70 ~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a 114 (342)
T COG0673 70 AVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELA 114 (342)
T ss_pred EEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 4444444556678899999999999999996 678888766654
No 279
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=31.70 E-value=53 Score=33.05 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 66 g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
.+.+++.+++.+ ||.|=+ ||+ =-.++++++++.-++|||.=-=-.+.+.+.+++++||...
T Consensus 106 l~~~~~~i~~~~--PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aV 166 (175)
T PF04309_consen 106 LETGIKQIEQSK--PDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAV 166 (175)
T ss_dssp HHHHHHHHHHHT---SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHhhcC--CCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEE
Confidence 446667777766 998766 788 5557777777777889875333467888999999999864
No 280
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=31.65 E-value=1.4e+02 Score=30.78 Aligned_cols=75 Identities=15% Similarity=0.069 Sum_probs=43.5
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCeEEEECCHH-HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 006044 34 LRVLVVDDDI------TCLRILEQMLRRCLYNVTTCSQAA-VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (663)
Q Consensus 34 iRVLIVDDD~------~~re~L~~lL~~~gy~V~tasng~-eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~ 106 (663)
||||++-... .....+...|.+.|++|....... ...+.++.. .||+|.+-.-....-.+..+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~--~~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEII--NADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhcc--cCCEEEEEccccCccCHHHHHHHH--cC
Confidence 5788886553 456667777878888876544333 344444444 499998754333333333444432 46
Q ss_pred CcEEEE
Q 006044 107 LPVIMM 112 (663)
Q Consensus 107 IPVIIL 112 (663)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 776654
No 281
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=31.56 E-value=6.2e+02 Score=26.41 Aligned_cols=65 Identities=20% Similarity=0.273 Sum_probs=37.3
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC----CCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006044 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD----GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (663)
Q Consensus 80 pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~----~d~e~v~kAl~~GA~dYLlKP~--s~eeLk~~Iq~VLr 151 (663)
.|++++.- + +..+++.+ ...+|+|++... +......+.+..+-.++++.+- +.++|.+++..++.
T Consensus 253 ad~~v~~s---g--~~t~~Eam--~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 253 ADLVISRA---G--ASTVAELA--ALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323 (350)
T ss_pred cCEEEECC---C--HhHHHHHH--HhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhc
Confidence 56776522 1 34445554 357888875421 2222222333334467888775 89999998887764
No 282
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=31.49 E-value=67 Score=32.75 Aligned_cols=79 Identities=20% Similarity=0.186 Sum_probs=43.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEe-c-CCCCCCHHH--HHHHHhccCCCcE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSD-V-HMPDMDGFK--LLEHIGLEMDLPV 109 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILD-I-~MPdmDG~E--LL~~Ir~~~~IPV 109 (663)
||||++|........+...|.+.++.+..+......+....+....+|.||+- = ..|..++.+ +++++. ..++||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~-~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACA-AAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHH-hCCCCE
Confidence 58999999988888889999888887765544322222222111237766652 1 112222322 333322 246787
Q ss_pred EEEe
Q 006044 110 IMMS 113 (663)
Q Consensus 110 IILS 113 (663)
+-+-
T Consensus 80 LGIC 83 (214)
T PRK07765 80 LGVC 83 (214)
T ss_pred EEEc
Confidence 7654
No 283
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.41 E-value=3.6e+02 Score=30.34 Aligned_cols=87 Identities=14% Similarity=0.044 Sum_probs=49.5
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecC-CCCCCHH--HHHHHHhc--cC
Q 006044 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH-MPDMDGF--KLLEHIGL--EM 105 (663)
Q Consensus 34 iRVLIVDDD~~---~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~-MPdmDG~--ELL~~Ir~--~~ 105 (663)
.+|.+|..|.. ..+.|+.+-+..+..+..+.+..+....+.+.. .+|+||+|.- +...|-. +.+..+.. .+
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-CCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 47888876664 345566555666777776766666555555443 4799999973 2222322 33333421 12
Q ss_pred CCcEEEEecCCCHHHH
Q 006044 106 DLPVIMMSADGRVSAV 121 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v 121 (663)
.-.++++++....+.+
T Consensus 247 ~~~lLVLsAts~~~~l 262 (374)
T PRK14722 247 VQRLLLLNATSHGDTL 262 (374)
T ss_pred CeEEEEecCccChHHH
Confidence 2346777776655443
No 284
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=31.40 E-value=3.6e+02 Score=28.23 Aligned_cols=104 Identities=15% Similarity=0.136 Sum_probs=61.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
.+++|+.+.+.. +.+++.+ .....+...-+.++..+.+.. .|++++-.. +.-|+-+++.+. ..+|||...
T Consensus 222 ~~l~ivG~g~~~-~~l~~~~-~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~~~ 291 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRAKA-GPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIAYG 291 (351)
T ss_pred CcEEEEECChhH-HHHHhhc-CCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEEeC
Confidence 567777766542 2333311 111222233355556666654 577775543 334555666653 467888754
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
... ..+.+..|..+++..|-+.++|.+++..++.
T Consensus 292 ~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~ 325 (351)
T cd03804 292 KGG----ALETVIDGVTGILFEEQTVESLAAAVERFEK 325 (351)
T ss_pred CCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 322 2334566778999999999999999988765
No 285
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.18 E-value=3.8e+02 Score=29.15 Aligned_cols=90 Identities=12% Similarity=0.060 Sum_probs=57.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh----CC--Ce-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006044 35 RVLVVDDDITCLRILEQMLRR----CL--YN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~----~g--y~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~I 107 (663)
-|||=|.|....-.+...+++ .. .. ...+.+.+++.+.+.. .+|+|++|=.-| -++-+.+.....-
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmsp----e~l~~av~~~~~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSL----EQIEQAITLIAGR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCH----HHHHHHHHHhcCc
Confidence 477777776555445554443 23 22 3478999999999864 389999994333 2333333221222
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCe
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACD 131 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~d 131 (663)
.++-.|+.-..+.+.+..+.|++-
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~ 265 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDY 265 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCE
Confidence 456678888888888888888874
No 286
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.17 E-value=2.3e+02 Score=29.62 Aligned_cols=68 Identities=15% Similarity=0.270 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHH-hcCCCeEEe
Q 006044 66 AAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGI-RHGACDYLI 134 (663)
Q Consensus 66 g~eALelLre~k~~pDLVILDI~MPdm-DG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl-~~GA~dYLl 134 (663)
..+.++.+.+.. .-.++++|+.--++ .| ++++++++....+|||.--+-.+.+.+.+++ +.|+++.+.
T Consensus 154 ~~e~~~~~~~~g-~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEALG-AGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHcC-CCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 445556665442 23588898864322 23 6778888777889999988888999999998 789987543
No 287
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=31.14 E-value=5.4e+02 Score=25.56 Aligned_cols=74 Identities=20% Similarity=0.271 Sum_probs=45.5
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Q 006044 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (663)
Q Consensus 67 ~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~I 146 (663)
++..+.+.. .|++|+-... +.-|..+++.+. ..+|||...... ..+.+..+-.+++..+.+.+++.+.+
T Consensus 267 ~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~~i 335 (374)
T cd03801 267 EDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDVGG----IPEVVEDGETGLLVPPGDPEALAEAI 335 (374)
T ss_pred hhHHHHHHh----cCEEEecchh-ccccchHHHHHH--cCCcEEEeCCCC----hhHHhcCCcceEEeCCCCHHHHHHHH
Confidence 444444433 4666654333 333455666553 467777543322 33445567888999999999999999
Q ss_pred HHHHH
Q 006044 147 QHVVR 151 (663)
Q Consensus 147 q~VLr 151 (663)
..++.
T Consensus 336 ~~~~~ 340 (374)
T cd03801 336 LRLLD 340 (374)
T ss_pred HHHHc
Confidence 88754
No 288
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=31.09 E-value=3.7e+02 Score=30.34 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=36.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eE-------------------EEECCHHHHHHHHHHcCCCceEEEEecCCCC
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NV-------------------TTCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy-~V-------------------~tasng~eALelLre~k~~pDLVILDI~MPd 91 (663)
..||||||..--.-.....++.+.-.+ .+ ....+.++.++.+++.. +|+|+....-|-
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~~--iD~Vv~g~E~~l 80 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSNP--FDLIVVGPEDPL 80 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHcC--CCEEEECCchHH
Confidence 458999998876655555555443111 11 11245666666777655 999998765544
Q ss_pred CCHH
Q 006044 92 MDGF 95 (663)
Q Consensus 92 mDG~ 95 (663)
..|+
T Consensus 81 ~~gl 84 (426)
T PRK13789 81 VAGF 84 (426)
T ss_pred HHHH
Confidence 4443
No 289
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=30.80 E-value=6.1e+02 Score=26.08 Aligned_cols=108 Identities=22% Similarity=0.289 Sum_probs=60.1
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006044 33 GLRVLVVDDDI---TCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (663)
Q Consensus 33 giRVLIVDDD~---~~re~L~~lL~~~gy--~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~I 107 (663)
.++++|+-+.+ ...+.+.+.+.+.+. .|.......+..+.+.. .|++|+=-.-++.-|..+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~----ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL----ADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh----CCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 34566664332 233333444443322 34433333333344432 46666543234445666777663 567
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
|||+.- ... ..+.+..+..+++..|-+.+++.+++..++
T Consensus 290 PvI~~~-~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~ 328 (355)
T cd03819 290 PVIASD-HGG---ARETVRPGETGLLVPPGDAEALAQALDQIL 328 (355)
T ss_pred CEEEcC-CCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 887533 222 345566777899999999999999986554
No 290
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=30.43 E-value=2.4e+02 Score=28.85 Aligned_cols=65 Identities=15% Similarity=0.229 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCCce-EEEEecCC---CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhc-CCCeEEe
Q 006044 68 VALDILRERKGCFD-VVLSDVHM---PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-GACDYLI 134 (663)
Q Consensus 68 eALelLre~k~~pD-LVILDI~M---PdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~-GA~dYLl 134 (663)
+..+.+.+. .+| ++++++.- ...-.++++++++...++|||+.-.-.+.+.+.++++. |++..+.
T Consensus 153 ~~~~~l~~~--G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 153 EWAKEVEEL--GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred HHHHHHHHC--CCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 333444443 367 66666542 11223788888877678999988888888999999987 8877655
No 291
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=30.40 E-value=2.5e+02 Score=33.14 Aligned_cols=93 Identities=14% Similarity=0.196 Sum_probs=46.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tas-ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
++.++++|.|+...+.++ +.++.+...+ +-.+.|+.+.- ++.|++++-++-+ .+-..++..+|+ .++++||
T Consensus 423 g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~agi--~~A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 423 KMRITVLERDISAVNLMR----KYGYKVYYGDATQLELLRAAGA--EKAEAIVITCNEP-EDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEeeCCCHHHHHhcCC--ccCCEEEEEeCCH-HHHHHHHHHHHHHCCCCeEE
Confidence 445666666665443332 2344443221 11223333222 2356666654332 223445555553 4677777
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEe
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+-+. +.+...+..+.||+..+.
T Consensus 496 aRa~--~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 496 ARAR--GRVEAHELLQAGVTQFSR 517 (601)
T ss_pred EEeC--CHHHHHHHHhCCCCEEEc
Confidence 6553 445566777889986664
No 292
>PLN02335 anthranilate synthase
Probab=30.33 E-value=57 Score=33.51 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=44.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecC-C-CCCCHHHHHHHHhc-cCCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH-M-PDMDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~-M-PdmDG~ELL~~Ir~-~~~IPV 109 (663)
..+|||||....+-..|.+.|++.++.+.++......++.+... .||.||+-=- | |...| ..++.++. ...+||
T Consensus 18 ~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~--~~d~iVisgGPg~p~d~~-~~~~~~~~~~~~~Pi 94 (222)
T PLN02335 18 NGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRK--NPRGVLISPGPGTPQDSG-ISLQTVLELGPLVPL 94 (222)
T ss_pred cCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhc--CCCEEEEcCCCCChhhcc-chHHHHHHhCCCCCE
Confidence 35899999777777889999999888777665422112333332 3777766321 1 11112 12333432 346787
Q ss_pred EEEe
Q 006044 110 IMMS 113 (663)
Q Consensus 110 IILS 113 (663)
+-+-
T Consensus 95 LGIC 98 (222)
T PLN02335 95 FGVC 98 (222)
T ss_pred EEec
Confidence 7653
No 293
>CHL00101 trpG anthranilate synthase component 2
Probab=30.32 E-value=59 Score=32.30 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=34.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVIL 85 (663)
|||||....+-..|.+.|++.+..+..+......++.+... .||.||+
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~--~~dgiii 49 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNL--NIRHIII 49 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhC--CCCEEEE
Confidence 89999999999999999999888877666443222223222 3787775
No 294
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=30.14 E-value=7.1e+02 Score=26.68 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=61.5
Q ss_pred cEEEEEeC---CH-HHHHHHHHHHHhCCC--eEEEEC--CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 006044 34 LRVLVVDD---DI-TCLRILEQMLRRCLY--NVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (663)
Q Consensus 34 iRVLIVDD---D~-~~re~L~~lL~~~gy--~V~tas--ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~ 105 (663)
++++|+.+ +. ...+.++++.+..+. .|.... +.++..+.+.. .|+.++-.. .+.-|..+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~----ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRA----ADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHh----CCEEEECCC-CCCcChHHHHHHH--c
Confidence 55566642 11 233445555544432 233322 23444444442 476665432 3344666666663 4
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.+|||...... ..+.+..|..+++..|-+.+++.+++.+++.
T Consensus 326 G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~ 367 (405)
T TIGR03449 326 GTPVVAARVGG----LPVAVADGETGLLVDGHDPADWADALARLLD 367 (405)
T ss_pred CCCEEEecCCC----cHhhhccCCceEECCCCCHHHHHHHHHHHHh
Confidence 68888644322 2345667888999999999999999988764
No 295
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=29.98 E-value=3.5e+02 Score=27.30 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecCCCC---------CCHHHHHHHHhc-c-CCCcEEEEecCCCHHHHHH---HHhcCC
Q 006044 64 SQAAVALDILRERKGCFDVVLSDVHMPD---------MDGFKLLEHIGL-E-MDLPVIMMSADGRVSAVMR---GIRHGA 129 (663)
Q Consensus 64 sng~eALelLre~k~~pDLVILDI~MPd---------mDG~ELL~~Ir~-~-~~IPVIILSa~~d~e~v~k---Al~~GA 129 (663)
.+-.+.++.+... .+|.|++|+.-.. .+-.+++..++. . ....+++=....+.....+ ++..|+
T Consensus 8 ~~~~~~~~~a~~~--g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~ 85 (221)
T PF03328_consen 8 ANSPKMLEKAAAS--GADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGA 85 (221)
T ss_dssp STSHHHHHHHHTT--CSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHhc--CCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCC
Confidence 3445556666554 4999999997543 223344444443 2 2345666455555555666 999999
Q ss_pred CeEEeCC-CCHHHHHHHHHHH
Q 006044 130 CDYLIKP-IREEELKNIWQHV 149 (663)
Q Consensus 130 ~dYLlKP-~s~eeLk~~Iq~V 149 (663)
++.++-= -+.++++.+++.+
T Consensus 86 ~gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 86 DGIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp SEEEETT--SHHHHHHHHHHH
T ss_pred CeeeccccCcHHHHHHHHHHH
Confidence 9876543 4677887777654
No 296
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=29.92 E-value=2.9e+02 Score=29.52 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=46.7
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 60 V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
...+.+.+++.+.++. ..|.|.+|-.-|. +--++.+.++.. +++|+++ ++--+.+.+.+..+.|++.+..
T Consensus 187 gVev~t~eea~~A~~~---gaD~I~ld~~~p~-~l~~~~~~~~~~~~~i~i~A-sGGI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 187 VVEVDSLEEALAAAEA---GADILQLDKFSPE-ELAELVPKLRSLAPPVLLAA-AGGINIENAAAYAAAGADILVT 257 (272)
T ss_pred EEEcCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHHhccCCCceEEE-ECCCCHHHHHHHHHcCCcEEEE
Confidence 3578899999888743 3899999955443 112344445433 4666554 4455778888999999987644
No 297
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=29.75 E-value=2.9e+02 Score=27.67 Aligned_cols=99 Identities=11% Similarity=0.095 Sum_probs=59.1
Q ss_pred HHcCCCCCCccccccccCC---CCCCCccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEE----C--CHHHHHHHHHHcC
Q 006044 9 QSSGGSGYGSSRAADVAVP---DQFPAGLRVLVVDDDITCLRILEQMLRRC--LYNVTTC----S--QAAVALDILRERK 77 (663)
Q Consensus 9 ~~mGGsg~gs~~~~dl~~~---d~fP~giRVLIVDDD~~~re~L~~lL~~~--gy~V~ta----s--ng~eALelLre~k 77 (663)
..+|+.-...+...|+... .--..+.+|.++-..+...+.+.+.|++. +.+|..+ . +.++.++.+.+..
T Consensus 21 r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~ 100 (177)
T TIGR00696 21 KLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSG 100 (177)
T ss_pred HHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcC
Confidence 3445433334444454221 11135689999999999999999999875 3444332 1 1233456666654
Q ss_pred CCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006044 78 GCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 78 ~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVII 111 (663)
+|+|++-+.+|...-+ +.+.+.....+|++
T Consensus 101 --~dil~VglG~PkQE~~--~~~~~~~~~~~v~~ 130 (177)
T TIGR00696 101 --AGIVFVGLGCPKQEIW--MRNHRHLKPDAVMI 130 (177)
T ss_pred --CCEEEEEcCCcHhHHH--HHHhHHhCCCcEEE
Confidence 9999999999986633 34444333344443
No 298
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=29.61 E-value=5.7e+02 Score=26.72 Aligned_cols=66 Identities=11% Similarity=0.040 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCeEEE-------ECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006044 45 CLRILEQMLRRCLYNVTT-------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSA 114 (663)
Q Consensus 45 ~re~L~~lL~~~gy~V~t-------asng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILSa 114 (663)
....++..+++.+.+|.. ..+....+..++... +|+|++... +.+...+++.++. ....+++..+.
T Consensus 157 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~--~d~i~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ 230 (345)
T cd06338 157 VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAG--PDAVVVAGH--FPDAVLLVRQMKELGYNPKALYMTV 230 (345)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcC--CCEEEECCc--chhHHHHHHHHHHcCCCCCEEEEec
Confidence 345556666666666542 134445556665543 788887543 3456667777653 34555655443
No 299
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=29.56 E-value=2.3e+02 Score=27.85 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=57.2
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEecCCCC-----CCHHHHHHHHh---ccCCCcEEEEecCCCH
Q 006044 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG---LEMDLPVIMMSADGRV 118 (663)
Q Consensus 49 L~~lL~~~gy~V~t--asng~eALelLre~k~~pDLVILDI~MPd-----mDG~ELL~~Ir---~~~~IPVIILSa~~d~ 118 (663)
+.+.|+..|+.+.. +..+...++.+.... ||.|-+|..+.. .....+++.+. ...+++|| ++.-++.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRLP--VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhCC--CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEE-EEecCCH
Confidence 44445666888765 456667777777665 999999975431 23345555552 23455544 5677778
Q ss_pred HHHHHHHhcCCC----eEEeCCCCH
Q 006044 119 SAVMRGIRHGAC----DYLIKPIRE 139 (663)
Q Consensus 119 e~v~kAl~~GA~----dYLlKP~s~ 139 (663)
+....+.+.|++ .|+.||...
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCC
Confidence 888888899985 367788654
No 300
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=29.54 E-value=3.5e+02 Score=26.76 Aligned_cols=70 Identities=7% Similarity=-0.022 Sum_probs=51.2
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 60 V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
+..+.+.+|+.+.++. .+|.|-++- .+.. |.++++.++.. +.+|++.+-+- +.+.+.+.++.|++....-
T Consensus 101 i~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 101 LPGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGG 171 (190)
T ss_pred ECCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEc
Confidence 3467788998888753 389998853 3333 89999998754 46887776655 7788899999998876544
No 301
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=28.93 E-value=4.9e+02 Score=27.42 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=37.2
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 93 DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
-|+-+++.+ ...+|||....... ..+.+..|..+|+..|-+.++|.+++..++.
T Consensus 291 ~~~~~lEAm--a~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~ 344 (372)
T cd04949 291 FGLSLMEAL--SHGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLN 344 (372)
T ss_pred cChHHHHHH--hCCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHc
Confidence 355555555 35678886432211 2344567889999999999999999988875
No 302
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=28.87 E-value=3.7e+02 Score=29.56 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=40.2
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006044 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (663)
Q Consensus 34 iRVLIVDDD~~----~re~L~~lL~~~gy~V~tas---------ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~ 100 (663)
-|+|||-|... ..+.+.+.|+..+..+..+. ...++.+.+++.. +|.||- ..+..-+++.+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGG--CDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHHH
Confidence 37999887644 33567777877666554442 2456667776654 898875 345566666665
Q ss_pred H
Q 006044 101 I 101 (663)
Q Consensus 101 I 101 (663)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 5
No 303
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=28.82 E-value=3.3e+02 Score=30.24 Aligned_cols=63 Identities=21% Similarity=0.241 Sum_probs=41.9
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006044 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (663)
Q Consensus 34 iRVLIVDDD~~----~re~L~~lL~~~gy~V~ta---------sng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~ 100 (663)
-|+|||-|... ..+.+...|+..+..+..+ ++..++.+.+++.+ +|.||- ..+..-++..+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~--~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENN--CDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC--CCEEEE---eCCchHHHHHHH
Confidence 48999987643 3456777887766555443 34557777777765 999884 346666666666
Q ss_pred H
Q 006044 101 I 101 (663)
Q Consensus 101 I 101 (663)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 5
No 304
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=28.77 E-value=1.2e+02 Score=30.29 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=35.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVIL 85 (663)
|||+|||-.--+...+.+.|++.++.+....+..+ +. .+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~~----~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----IL----DADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----Hc----cCCEEEE
Confidence 68999999999999999999999998887765322 21 3888887
No 305
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=28.73 E-value=4.5e+02 Score=34.05 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=68.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEecCCCC-CCH-HHHHHHHhc
Q 006044 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGL 103 (663)
Q Consensus 33 giRVLIV----DDD~~~re~L~~lL~~~gy~V~tas---ng~eALelLre~k~~pDLVILDI~MPd-mDG-~ELL~~Ir~ 103 (663)
.-+|++. |-|.+=...+.-+|+..||+|+-.. ..++.++.+++.+ +|+|-+-..|.. +.. -++++.+++
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~~--~diVgLS~Lmt~t~~~m~~vi~~L~~ 809 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDHN--ADVIGLSGLITPSLDEMKEVAEEMNR 809 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcccccHHHHHHHHHHHHh
Confidence 3477777 6777777778888888899997433 5778888888765 999999887753 333 346677754
Q ss_pred -cCCCcEEEEecCCCHHHHHH---HHhcCCCeEEeCCC
Q 006044 104 -EMDLPVIMMSADGRVSAVMR---GIRHGACDYLIKPI 137 (663)
Q Consensus 104 -~~~IPVIILSa~~d~e~v~k---Al~~GA~dYLlKP~ 137 (663)
..++||++=-+--..+.+.. ....||+.|..-..
T Consensus 810 ~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~ 847 (1178)
T TIGR02082 810 RGITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDAS 847 (1178)
T ss_pred cCCCceEEEeccccchhHHHhhhhhhccCCeEEecCHH
Confidence 35677776554444444432 12338888876443
No 306
>PRK04302 triosephosphate isomerase; Provisional
Probab=28.38 E-value=6.5e+02 Score=25.61 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=36.1
Q ss_pred HHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC--CCHHHHHHHHHH
Q 006044 96 KLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP--IREEELKNIWQH 148 (663)
Q Consensus 96 ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP--~s~eeLk~~Iq~ 148 (663)
++++.+++. .++|||.-.+-...+.+..+.+.|+++.+.=- ++.+.+..+++.
T Consensus 162 ~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~ 217 (223)
T PRK04302 162 DAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRD 217 (223)
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHH
Confidence 445556653 47899988888888999999999999987643 233344444443
No 307
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.24 E-value=5.5e+02 Score=27.81 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=59.7
Q ss_pred cEEEEE--eCCHHHH---HHHHHHHHhCCCeEEEECCHHH---HHH-------H--HHHcCCCceEEEEecCCCCCCHHH
Q 006044 34 LRVLVV--DDDITCL---RILEQMLRRCLYNVTTCSQAAV---ALD-------I--LRERKGCFDVVLSDVHMPDMDGFK 96 (663)
Q Consensus 34 iRVLIV--DDD~~~r---e~L~~lL~~~gy~V~tasng~e---ALe-------l--Lre~k~~pDLVILDI~MPdmDG~E 96 (663)
.+|+|+ -+.+... ..+..+|.+.++.+........ ++. . .......+|+||+ -+.||-
T Consensus 6 ~~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT- 80 (296)
T PRK04539 6 HNIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV----LGGDGT- 80 (296)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE----ECCcHH-
Confidence 458887 3344444 4455556666777765321111 110 0 0111113688776 367874
Q ss_pred HHHHHhc--cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 97 LLEHIGL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 97 LL~~Ir~--~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+|+..+. ..++||+-+- .|-.+||.- ++.+++...++.++++.+
T Consensus 81 ~L~aa~~~~~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 81 FLSVAREIAPRAVPIIGIN-------------QGHLGFLTQ-IPREYMTDKLLPVLEGKY 126 (296)
T ss_pred HHHHHHHhcccCCCEEEEe-------------cCCCeEeec-cCHHHHHHHHHHHHcCCc
Confidence 4454442 3578988665 466889984 889999999999887653
No 308
>PLN02591 tryptophan synthase
Probab=28.20 E-value=7.4e+02 Score=26.23 Aligned_cols=98 Identities=13% Similarity=0.043 Sum_probs=60.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEE-EE--CCHHHHHHHHHHcCCCceEEEEecCCCC---------CCHHHHHHHHhc
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVT-TC--SQAAVALDILRERKGCFDVVLSDVHMPD---------MDGFKLLEHIGL 103 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~-ta--sng~eALelLre~k~~pDLVILDI~MPd---------mDG~ELL~~Ir~ 103 (663)
|||.|-...-.+.+...+++.+.... .+ +..++=++.+.+.. .+.|-+ +.+.+ .+-.++++++|+
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~gFIY~-Vs~~GvTG~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EGFVYL-VSSTGVTGARASVSGRVESLLQELKE 186 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CCcEEE-eeCCCCcCCCcCCchhHHHHHHHHHh
Confidence 56666665556666666666665433 22 22233445555443 343332 11111 123456778887
Q ss_pred cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 104 ~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
..++||++=.+-.+.+.+.+..+.||++.++-.
T Consensus 187 ~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 187 VTDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred cCCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 789999987777788899999999999999865
No 309
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=28.12 E-value=3.2e+02 Score=27.53 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecCCC--C-CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 64 SQAAVALDILRERKGCFDVVLSDVHMP--D-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 64 sng~eALelLre~k~~pDLVILDI~MP--d-mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
.+..+..+.+.+.. --.+.++|+.-- + ..-+++++++++...+||++=-.-.+.+.+.+++..||+..++--
T Consensus 30 ~~~~~~a~~~~~~g-~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 30 DDPVAQAKAWEDQG-AKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred CCHHHHHHHHHHcC-CCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 46667677666542 235788887421 1 234788888877678899987777788999999999998776543
No 310
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=27.99 E-value=3.6e+02 Score=35.03 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=66.8
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEEC---CHHHHHHHHHHcCCCceEEEEecCCCC-CCH-HHHHHHHhc-
Q 006044 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTCS---QAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHIGL- 103 (663)
Q Consensus 34 iRVLIV----DDD~~~re~L~~lL~~~gy~V~tas---ng~eALelLre~k~~pDLVILDI~MPd-mDG-~ELL~~Ir~- 103 (663)
-+||+. |-|.+=...+.-+|+..||+|+-.. ..++.++.+++.+ +|+|.+-..|.. +.. .++++.++.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~~--~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEEN--ADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHhC--CCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 477777 7777778888888888999987433 5678888888766 999999887753 333 456677754
Q ss_pred cCCCcEEEEecCCCHHH-HHHH--HhcCCCeEEeCCC
Q 006044 104 EMDLPVIMMSADGRVSA-VMRG--IRHGACDYLIKPI 137 (663)
Q Consensus 104 ~~~IPVIILSa~~d~e~-v~kA--l~~GA~dYLlKP~ 137 (663)
..++||++=-+.-.... ..+. --.||+.|..-..
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA~ 866 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDAS 866 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCHH
Confidence 35777776544333222 1111 1128888876443
No 311
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=27.82 E-value=3.6e+02 Score=28.28 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=36.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCC
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCL-----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~g-----y~V~-tasng~eALelLre~k~~pDLVILDI~MPd 91 (663)
.+|.+||-++...+..++.+.... -.+. ...++.+.++ .....+|+||+|..-|.
T Consensus 97 ~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---~~~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 97 EKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---DTENTFDVIIVDSTDPV 157 (270)
T ss_pred ceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH---hCCCCccEEEEeCCCCC
Confidence 479999999999888888875421 1222 3345555444 33345999999986443
No 312
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=27.71 E-value=2e+02 Score=28.28 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCC--CCCHHHHHHHHhcc-CCCcEEEE--ecCCCHHHHHHHHhcCCCeEEeCCCC-
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLE-MDLPVIMM--SADGRVSAVMRGIRHGACDYLIKPIR- 138 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MP--dmDG~ELL~~Ir~~-~~IPVIIL--Sa~~d~e~v~kAl~~GA~dYLlKP~s- 138 (663)
+.+++++.++..... +-++.+.+| -..|+++++.+++. +++|+++- ........+..+.++||+..+.-...
T Consensus 11 ~~~~~~~~~~~l~~~--i~~ieig~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~ 88 (202)
T cd04726 11 DLEEALELAKKVPDG--VDIIEAGTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAP 88 (202)
T ss_pred CHHHHHHHHHHhhhc--CCEEEcCCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCC
Confidence 444555555443322 223444333 23578889888764 67888763 22222233567889999876654333
Q ss_pred HHHHHHHHHH
Q 006044 139 EEELKNIWQH 148 (663)
Q Consensus 139 ~eeLk~~Iq~ 148 (663)
.+.+...++.
T Consensus 89 ~~~~~~~i~~ 98 (202)
T cd04726 89 LSTIKKAVKA 98 (202)
T ss_pred HHHHHHHHHH
Confidence 2344444443
No 313
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=27.65 E-value=3.8e+02 Score=29.50 Aligned_cols=63 Identities=13% Similarity=0.181 Sum_probs=40.5
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEECC---------HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006044 34 LRVLVVDDDITC----LRILEQMLRRCLYNVTTCSQ---------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (663)
Q Consensus 34 iRVLIVDDD~~~----re~L~~lL~~~gy~V~tasn---------g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~ 100 (663)
-|+|||-|.... .+.++..|+..+..+..+.. ..++.+.+++.. +|+||- ..+..-+++.+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEG--CDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCcHHHHHHHH
Confidence 389999876543 34677788776665554432 446666666654 898885 345566666665
Q ss_pred H
Q 006044 101 I 101 (663)
Q Consensus 101 I 101 (663)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 5
No 314
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=27.51 E-value=4.3e+02 Score=28.90 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=41.4
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006044 34 LRVLVVDDDITCL-----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (663)
Q Consensus 34 iRVLIVDDD~~~r-----e~L~~lL~~~gy~V~tas---------ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~ 99 (663)
-|+|||-|..... +.+...|+..+..+..+. +..++.+.+++.. +|+||- ..+..-+++.+
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGSviD~aK 100 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFN--ADFVIG---IGGGSPLDAAK 100 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHH
Confidence 5899998876522 567788877666555442 3456667777655 898876 45666666666
Q ss_pred HH
Q 006044 100 HI 101 (663)
Q Consensus 100 ~I 101 (663)
.+
T Consensus 101 ~i 102 (357)
T cd08181 101 AI 102 (357)
T ss_pred HH
Confidence 54
No 315
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=27.41 E-value=4e+02 Score=26.60 Aligned_cols=67 Identities=19% Similarity=0.108 Sum_probs=43.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006044 35 RVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~--V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
+|..||.++...+.+++-++..+.. + ....+..+++..+......+|+|++|-=.....--++++.+
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHH
Confidence 7999999999999998888776542 3 24556656655443222237999999755433334455555
No 316
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.38 E-value=6.7e+02 Score=26.59 Aligned_cols=98 Identities=11% Similarity=0.038 Sum_probs=58.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEEE-EC--CHHHHHHHHHHcCCCceEEEE-ec-CCCC------CCHHHHHHHHhcc
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVTT-CS--QAAVALDILRERKGCFDVVLS-DV-HMPD------MDGFKLLEHIGLE 104 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~t-as--ng~eALelLre~k~~pDLVIL-DI-~MPd------mDG~ELL~~Ir~~ 104 (663)
|+|.|=...-.+.+...+++.+..... ++ +..+-++.+.+.. .+.|-+ .. .-.+ .+..++++++++.
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 444444444445555556666654322 22 2234455555544 454432 11 1111 2355688888877
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 105 ~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
.++||++=.+-.+.+.+.++.+. |++.++-.
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcH
Confidence 78999987777788888888875 99988765
No 317
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=27.29 E-value=83 Score=33.86 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=39.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-----CeEE-EECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCL-----YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~g-----y~V~-tasng~eALelLre~k~~pDLVILDI~MP 90 (663)
-+|.+||=|+.+.+.-+++|.... -+|. ... ++.+.+++....+|+||+|..-|
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~---Dg~~~v~~~~~~fDvIi~D~tdp 160 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIID---DGVEFLRDCEEKFDVIIVDSTDP 160 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEec---cHHHHHHhCCCcCCEEEEcCCCC
Confidence 379999999999999999987542 2232 344 45555555544699999999877
No 318
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=27.26 E-value=72 Score=36.43 Aligned_cols=52 Identities=29% Similarity=0.447 Sum_probs=29.5
Q ss_pred CCcccccHHHHHHHHHHHHHh---ccCccc--------HHHHHHHhc-CCC--CCHHHHHHHHHHH
Q 006044 220 KPRVVWSVELHQQFVSAVNQL---GIDKAV--------PKRILELMN-VPG--LTRENVASHLQKF 271 (663)
Q Consensus 220 KpRVvWTvELHrkFv~AVnqL---GidKAv--------PKkILElMn-Vpg--LTrenVASHLQKy 271 (663)
+..-+|..++.+.|.+|+..+ |-.|-. -+-|-+++. ..| -||.+|+||+|.+
T Consensus 47 ~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 47 DGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTGKTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS----SHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhCcccchhHHHHHHHHH
Confidence 344589999999999999876 222210 012223331 223 4679999999999
No 319
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=27.19 E-value=1.4e+02 Score=28.83 Aligned_cols=52 Identities=23% Similarity=0.165 Sum_probs=35.0
Q ss_pred CCccEEEEEeCCHHH---------HHHHHHHHHhC-CCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006044 31 PAGLRVLVVDDDITC---------LRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLS 85 (663)
Q Consensus 31 P~giRVLIVDDD~~~---------re~L~~lL~~~-gy~V~tasng~eALelLre~k~~pDLVIL 85 (663)
+..++|.|||.|... -+.+.+.|... .+.+.. .+..+|.+.++..+ ++.+|.
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g~--~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADGK--YYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcCc--EEEEEE
Confidence 467899999988654 34445555543 445443 48899999998765 776654
No 320
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=27.16 E-value=3.6e+02 Score=28.91 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=51.0
Q ss_pred CCeEEEECCHH-----HH---HH-HHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhc
Q 006044 57 LYNVTTCSQAA-----VA---LD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH 127 (663)
Q Consensus 57 gy~V~tasng~-----eA---Le-lLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~ 127 (663)
+..+..+++|. ++ .. +++++. ||++|.=---|..-|-.-.+.+-+..++|.|++|....... .++++.
T Consensus 31 dI~vrv~gsGaKm~pe~~~~~~~~~~~~~~--pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~-~d~l~~ 107 (277)
T PRK00994 31 DIDVRVVGSGAKMGPEEVEEVVKKMLEEWK--PDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKV-KDAMEE 107 (277)
T ss_pred CceEEEeccCCCCCHHHHHHHHHHHHHhhC--CCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccch-HHHHHh
Confidence 55666665442 22 22 334554 99988755445566776677765667889999997665553 378877
Q ss_pred CCCeEEeCCCC
Q 006044 128 GACDYLIKPIR 138 (663)
Q Consensus 128 GA~dYLlKP~s 138 (663)
.-.+||+-+.+
T Consensus 108 ~g~GYIivk~D 118 (277)
T PRK00994 108 QGLGYIIVKAD 118 (277)
T ss_pred cCCcEEEEecC
Confidence 77788766543
No 321
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.16 E-value=6.6e+02 Score=26.19 Aligned_cols=85 Identities=11% Similarity=0.117 Sum_probs=51.2
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCc--EEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP--VIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 58 y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~--~~IP--VIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
.-|....+.++|++.++... .--+=++.+.|-.-++++.++.|+.. ...| +|=.-.--+.+.+..++++||. |+
T Consensus 18 i~Vvr~~~~~~a~~~~~al~-~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~-Fi 95 (222)
T PRK07114 18 VPVFYHADVEVAKKVIKACY-DGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGAN-FI 95 (222)
T ss_pred EEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCC-EE
Confidence 34556777777777665431 12233556666566788888877421 1122 2334445578889999999997 66
Q ss_pred eCCCCHHHHHH
Q 006044 134 IKPIREEELKN 144 (663)
Q Consensus 134 lKP~s~eeLk~ 144 (663)
+-|.-..++.+
T Consensus 96 VsP~~~~~v~~ 106 (222)
T PRK07114 96 VTPLFNPDIAK 106 (222)
T ss_pred ECCCCCHHHHH
Confidence 66755555443
No 322
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=27.15 E-value=2.9e+02 Score=28.90 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=59.7
Q ss_pred EEeCCHHHHHHHHHHHHhCCCeEEE-----EC--CHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhccC-CC
Q 006044 38 VVDDDITCLRILEQMLRRCLYNVTT-----CS--QAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEM-DL 107 (663)
Q Consensus 38 IVDDD~~~re~L~~lL~~~gy~V~t-----as--ng~eALelLre~k~~pDLVILDI~MPdm--DG~ELL~~Ir~~~-~I 107 (663)
+..|.....+.++.+- ..+..|+. .. +..+..+.+.+. ..|.|.+|...++. --++.++++++.. ++
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~a--Gad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~i 192 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVDD--GFDGIHVDAMYPGKPYADMDLLKILSEEFNDK 192 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHHc--CCCEEEEeeCCCCCchhhHHHHHHHHHhcCCC
Confidence 4455555555555554 33333321 11 222333444443 48988889776653 2478888887765 59
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
|||.--.-.+.+.+.+.++.||+...+
T Consensus 193 pIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 193 IIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 999887778888999999999987643
No 323
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=27.00 E-value=2.7e+02 Score=28.59 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 64 SQAAVALDILRERKGCFDVVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 64 sng~eALelLre~k~~pDLVILDI~MPdm-DG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+..+.++.+.+.. .-.+|++|+.--++ .| ++++++++...++|+|+--+-.+.+.+.++.+.|+++.+.
T Consensus 147 ~~~~~~~~~~~~~g-~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEELG-AGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHTT--SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhcC-CcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 45677777777653 35799999976542 33 5778888766699999988888889999999999988765
No 324
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=26.89 E-value=5.3e+02 Score=26.68 Aligned_cols=100 Identities=14% Similarity=0.150 Sum_probs=58.3
Q ss_pred EEEEEeCCHHHHHHHHHHHH---hCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCC---CHHH----HHHHHhcc
Q 006044 35 RVLVVDDDITCLRILEQMLR---RCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM---DGFK----LLEHIGLE 104 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~---~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdm---DG~E----LL~~Ir~~ 104 (663)
.|.+---+|..+..+..+++ ..++.+..-+||.-..+.++ ..|.|.+|+..|.. ..++ .++.+++.
T Consensus 75 ~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~~l~----~~d~v~vs~K~~~sg~~~~~~~~~~~ik~l~~~ 150 (238)
T TIGR03365 75 HVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFR----DLDDLTLSPKPPSSGMETDWQALDDCIERLDDG 150 (238)
T ss_pred eEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHHHHh----hCCEEEEeCCCCCCCCCCcHHHHHHHHHHhhhc
Confidence 57888999988766666554 45888888888875555443 26889999998852 2232 33344322
Q ss_pred CC--CcEEEEecCCCHHHHHHHHhc-CCCeEEeCCCCH
Q 006044 105 MD--LPVIMMSADGRVSAVMRGIRH-GACDYLIKPIRE 139 (663)
Q Consensus 105 ~~--IPVIILSa~~d~e~v~kAl~~-GA~dYLlKP~s~ 139 (663)
.. +.++ ++...+.+.+.+.... ....+++-|...
T Consensus 151 ~~~~vK~V-v~~~~d~~~a~~~~~~~~~~~~~l~P~~~ 187 (238)
T TIGR03365 151 PQTSLKVV-VFDDADYAYAKEVHARYPDLPFYLQPGNH 187 (238)
T ss_pred CceEEEEE-ECCcccHHHHHHHHHhcCCCCEEECCCCC
Confidence 22 3444 3444555444443321 122466777654
No 325
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=26.58 E-value=5.5e+02 Score=29.33 Aligned_cols=85 Identities=24% Similarity=0.271 Sum_probs=43.7
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHHcCCCceEEEEecC--CC-CCCHHHHH
Q 006044 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDVH--MP-DMDGFKLL 98 (663)
Q Consensus 32 ~giRVLIVDDD~---~~re~L~~lL~~~gy~V~tas---ng~----eALelLre~k~~pDLVILDI~--MP-dmDG~ELL 98 (663)
.+.+|++||-|. ...+.|+.+-...+..+..+. +.. ++++.+... .+|+||+|.- ++ +.+.++-+
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~~--~~DvVIIDTaGr~~~d~~l~~eL 204 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKEN--GFDVVIVDTAGRLQIDEELMEEL 204 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCccccCHHHHHHH
Confidence 357899999984 233344444444454444332 332 344444333 4999999983 22 12244444
Q ss_pred HHHhc--cCCCcEEEEecCCCH
Q 006044 99 EHIGL--EMDLPVIMMSADGRV 118 (663)
Q Consensus 99 ~~Ir~--~~~IPVIILSa~~d~ 118 (663)
..+.. .++-.++++.+....
T Consensus 205 ~~i~~~~~p~e~lLVvda~tgq 226 (428)
T TIGR00959 205 AAIKEILNPDEILLVVDAMTGQ 226 (428)
T ss_pred HHHHHhhCCceEEEEEeccchH
Confidence 44432 244345555554433
No 326
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=26.52 E-value=2.4e+02 Score=29.66 Aligned_cols=92 Identities=20% Similarity=0.293 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHH-
Q 006044 47 RILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGI- 125 (663)
Q Consensus 47 e~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl- 125 (663)
..|.++.++.|.......-..++++.+.+ +++-..=|--.+.+-+.+++++.. .+.|||+=|+....+.+.+|+
T Consensus 59 ~~L~~~~~~~gi~f~stpfd~~s~d~l~~----~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~stl~EI~~Av~ 133 (241)
T PF03102_consen 59 KELFEYCKELGIDFFSTPFDEESVDFLEE----LGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGMSTLEEIERAVE 133 (241)
T ss_dssp HHHHHHHHHTT-EEEEEE-SHHHHHHHHH----HT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT--HHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEECCCCHHHHHHHHH----cCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCCCCHHHHHHHHH
Confidence 44566666677776666666788888865 344455566667888999999964 678999999888877766654
Q ss_pred ---hcCCCeEEe------CCCCHHHHH
Q 006044 126 ---RHGACDYLI------KPIREEELK 143 (663)
Q Consensus 126 ---~~GA~dYLl------KP~s~eeLk 143 (663)
+.|..++++ -|...+++.
T Consensus 134 ~~~~~~~~~l~llHC~s~YP~~~e~~N 160 (241)
T PF03102_consen 134 VLREAGNEDLVLLHCVSSYPTPPEDVN 160 (241)
T ss_dssp HHHHHCT--EEEEEE-SSSS--GGG--
T ss_pred HHHhcCCCCEEEEecCCCCCCChHHcC
Confidence 446655432 255555553
No 327
>PLN02823 spermine synthase
Probab=26.50 E-value=1.7e+02 Score=32.22 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=37.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006044 34 LRVLVVDDDITCLRILEQMLRRC-----LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~-----gy~V~-tasng~eALelLre~k~~pDLVILDI~MP 90 (663)
.+|.+||=|+.+.+..++.+... .-++. ...++.+.+ +.....||+||+|+--|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 58999999999999999988532 12332 455655555 44344699999997544
No 328
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=26.35 E-value=1.5e+02 Score=27.01 Aligned_cols=22 Identities=18% Similarity=0.005 Sum_probs=12.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE
Q 006044 40 DDDITCLRILEQMLRRCLYNVT 61 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~ 61 (663)
|.+......+...|...||.+.
T Consensus 8 d~~K~~~~~~a~~l~~~G~~i~ 29 (112)
T cd00532 8 DHVKAMLVDLAPKLSSDGFPLF 29 (112)
T ss_pred cccHHHHHHHHHHHHHCCCEEE
Confidence 4444444455555556677764
No 329
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=26.13 E-value=1.1e+02 Score=32.57 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=39.5
Q ss_pred HHHHHHHHh-ccCCCcEEEEecCC------CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHH
Q 006044 94 GFKLLEHIG-LEMDLPVIMMSADG------RVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (663)
Q Consensus 94 G~ELL~~Ir-~~~~IPVIILSa~~------d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq 147 (663)
.+++++++| ...++|+|+||=++ -.....+|-++|+++.|+--+..++-.....
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~ 134 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE 134 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH
Confidence 467788888 77899999998544 2345667778999999998777766554443
No 330
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=26.08 E-value=4.3e+02 Score=29.41 Aligned_cols=93 Identities=10% Similarity=0.007 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCC----CHHHHHHHHhc-cCCCcEEEEecCCC
Q 006044 43 ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM----DGFKLLEHIGL-EMDLPVIMMSADGR 117 (663)
Q Consensus 43 ~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdm----DG~ELL~~Ir~-~~~IPVIILSa~~d 117 (663)
..--+.|...|...||..+.. ...+|+|++.....-. ..++.++++++ .++.+||+ ++..-
T Consensus 10 ~~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvv-gGc~a 75 (414)
T TIGR01579 10 QYESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIV-TGCYA 75 (414)
T ss_pred HHHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEE-ECCcc
Confidence 344567888888888875431 1237999998755443 36778888864 34555554 44332
Q ss_pred HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 006044 118 VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (663)
Q Consensus 118 ~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~V 149 (663)
.....++.++...|++.-+-....+.+.++..
T Consensus 76 ~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 76 QSNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred ccCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 22333445666678999998888888777654
No 331
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=26.06 E-value=3.7e+02 Score=27.23 Aligned_cols=72 Identities=14% Similarity=0.178 Sum_probs=52.3
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 63 CSQAAVALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 63 asng~eALelLre~k~~pDLVILDI~MPdm---DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
..+..++.+.+.+.. .-.++++|+.--+. .-+++++++.+...+||++=..-.+.+.+.++++.|++..++-
T Consensus 29 ~~dp~~~a~~~~~~g-~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 29 IGDPVNAARIYNAKG-ADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 347777777776543 22589999976432 3467788887667889988777778888888899998877664
No 332
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=26.04 E-value=3.3e+02 Score=29.58 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=48.2
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEE--------EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006044 34 LRVLVVDDDITC---LRILEQMLRRCLYNVT--------TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (663)
Q Consensus 34 iRVLIVDDD~~~---re~L~~lL~~~gy~V~--------tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir 102 (663)
-|+|||-|.... .+.+...|+..+..+. +..+..++.+.+++.+ +|+||- +.+..-+++.+.+.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGS~iD~aK~ia 97 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNG--ADVVIG---IGGGKTLDTAKAVA 97 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcC--CCEEEE---ecCchhhHHHHHHH
Confidence 588888876543 3445555655444332 1234456666666654 898876 56777788888876
Q ss_pred ccCCCcEEEEec
Q 006044 103 LEMDLPVIMMSA 114 (663)
Q Consensus 103 ~~~~IPVIILSa 114 (663)
....+|+|.+..
T Consensus 98 ~~~~~P~iaIPT 109 (351)
T cd08170 98 DYLGAPVVIVPT 109 (351)
T ss_pred HHcCCCEEEeCC
Confidence 556788887643
No 333
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=26.03 E-value=2.4e+02 Score=30.26 Aligned_cols=84 Identities=18% Similarity=0.327 Sum_probs=58.3
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEec---C-----CCCCCHHHHHHHHhccCCCcEEEEec-CCCHHHHHHHHhcCCCeEE
Q 006044 63 CSQAAVALDILRERKGCFDVVLSDV---H-----MPDMDGFKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 63 asng~eALelLre~k~~pDLVILDI---~-----MPdmDG~ELL~~Ir~~~~IPVIILSa-~~d~e~v~kAl~~GA~dYL 133 (663)
+++.++|.+.+++.. +|.+-..+ + -|.. ++++++.|++.-++|+++.-+ .-+.+.+.++++.|++..=
T Consensus 152 ~t~~eea~~f~~~tg--vD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKETG--VDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHHC--cCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 568899998887544 78777542 2 1333 489999998777899988763 3455678889999998765
Q ss_pred eCCCCHHHHHHHHHHHHHHh
Q 006044 134 IKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 134 lKP~s~eeLk~~Iq~VLrkk 153 (663)
.= .+|+.++.+.+++.
T Consensus 229 v~----T~l~~a~~~~~~~~ 244 (282)
T TIGR01859 229 ID----TDCRIAFTAAIRKV 244 (282)
T ss_pred EC----cHHHHHHHHHHHHH
Confidence 42 35666666655543
No 334
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=26.02 E-value=1.5e+02 Score=35.62 Aligned_cols=72 Identities=18% Similarity=0.322 Sum_probs=49.0
Q ss_pred CceEEEEe-cCCCCCCHHHHH-HHHhccC-CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 79 CFDVVLSD-VHMPDMDGFKLL-EHIGLEM-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 79 ~pDLVILD-I~MPdmDG~ELL-~~Ir~~~-~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
.+.++|+| ++|-..+.++.+ +.|.+-+ .+.+|+.|. +...+...+...+.-|-.||++.+++...+++++++
T Consensus 119 ~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt--~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~ 193 (647)
T PRK07994 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT--DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQA 193 (647)
T ss_pred CCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC--CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH
Confidence 47788887 566555566644 4444322 344555543 444566677778889999999999999999988765
No 335
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.94 E-value=4.2e+02 Score=28.52 Aligned_cols=91 Identities=8% Similarity=0.005 Sum_probs=58.1
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--CeE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006044 35 RVLVVDDDITCLRILEQMLR----RCL--YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~----~~g--y~V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~I 107 (663)
.|||=|.|....-.++..+. ..+ ..| .++.+.+++.+.+.. .+|.|.+|- =|.+.++++......
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 47777777655544444443 223 223 478899998888753 389999973 345666666433233
Q ss_pred cE-EEEecCCCHHHHHHHHhcCCCeEE
Q 006044 108 PV-IMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 108 PV-IILSa~~d~e~v~kAl~~GA~dYL 133 (663)
|+ |..++--..+.+.+..+.|++..-
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~IA 258 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYIS 258 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEE
Confidence 33 345556678888889999998754
No 336
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=25.92 E-value=3.1e+02 Score=28.91 Aligned_cols=59 Identities=19% Similarity=0.305 Sum_probs=44.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHc---CCCceEEEEecC
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVH 88 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasng~eALelLre~---k~~pDLVILDI~ 88 (663)
.|.+-+|.-+|-++...+.-+..+++.++ .|. ...++.+.|..+... ...||+|++|..
T Consensus 101 l~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 101 LPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 35556899999999999999999988764 343 566777777766432 236999999986
No 337
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=25.92 E-value=3.4e+02 Score=27.62 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCC---CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe------
Q 006044 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI------ 134 (663)
Q Consensus 65 ng~eALelLre~k~~pD-LVILDI~MP---dmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl------ 134 (663)
+..+..+.+.... ++ ++++|+..- ..-.+++++++....++|||+--+-.+.+.+.+.++.||+..+.
T Consensus 150 ~~~~~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 150 TPVEAAKRFEELG--AGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CHHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 4455555554432 44 667776421 12347888888776789999988888888888889999998654
Q ss_pred CCCCHHHHHH
Q 006044 135 KPIREEELKN 144 (663)
Q Consensus 135 KP~s~eeLk~ 144 (663)
.|+..++++.
T Consensus 228 ~~~~~~~~~~ 237 (241)
T PRK13585 228 GKFTLEEAIE 237 (241)
T ss_pred CCcCHHHHHH
Confidence 4555444443
No 338
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.81 E-value=4.9e+02 Score=30.92 Aligned_cols=54 Identities=24% Similarity=0.227 Sum_probs=34.2
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEec
Q 006044 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 33 giRVLIVDDD~~~---re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI 87 (663)
+.+|.+++-|..- .+.+..+-+..+..+..+.+..+..+.++... .+|+||+|.
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-~~DLVLIDT 436 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-DYKLVLIDT 436 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc-cCCEEEecC
Confidence 4578888876521 23333333334566666677777767766543 589999997
No 339
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.72 E-value=2.3e+02 Score=33.32 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=58.0
Q ss_pred cEEEEE--eCCHHHHH---HHHHHHHhCCCeEEEECCHHHHHHH-HH------HcCCCceEEEEecCCCCCCHHHHHHHH
Q 006044 34 LRVLVV--DDDITCLR---ILEQMLRRCLYNVTTCSQAAVALDI-LR------ERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 34 iRVLIV--DDD~~~re---~L~~lL~~~gy~V~tasng~eALel-Lr------e~k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
++|.|+ -+.+...+ .+..+|.+.+..+.........+.. +. .....+|+||+ -+.||- +|+..
T Consensus 291 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT-~L~aa 365 (569)
T PRK14076 291 TKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIIS----IGGDGT-VLRAS 365 (569)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEE----ECCcHH-HHHHH
Confidence 467777 23344443 3444455556666554332222211 00 00012566665 266773 45555
Q ss_pred hc--cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006044 102 GL--EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (663)
Q Consensus 102 r~--~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~ 155 (663)
+. ..++||+-+. .|-.+||. .++.+++...++.++++.+.
T Consensus 366 ~~~~~~~~PilGin-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~~~ 407 (569)
T PRK14076 366 KLVNGEEIPIICIN-------------MGTVGFLT-EFSKEEIFKAIDSIISGEYE 407 (569)
T ss_pred HHhcCCCCCEEEEc-------------CCCCCcCc-ccCHHHHHHHHHHHHcCCce
Confidence 42 3478887553 46678888 78899999999999876543
No 340
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=25.69 E-value=6.2e+02 Score=25.30 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=35.5
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 94 G~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
|..+++.+. ..+|||.- .... ..+.+..+..+++.++-+.+++.+++..++..
T Consensus 292 ~~~~~Ea~~--~G~pvI~~-~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~ 344 (377)
T cd03798 292 GLVLLEAMA--CGLPVVAT-DVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLAD 344 (377)
T ss_pred ChHHHHHHh--cCCCEEEe-cCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcC
Confidence 344444442 46787753 2222 34456778888999999999999999887653
No 341
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.68 E-value=4.8e+02 Score=32.17 Aligned_cols=111 Identities=17% Similarity=0.076 Sum_probs=61.8
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCC---C--HHHHHHHHh-c-
Q 006044 34 LRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM---D--GFKLLEHIG-L- 103 (663)
Q Consensus 34 iRVLIVDDD~~---~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdm---D--G~ELL~~Ir-~- 103 (663)
.+|.+|+-|.. ..+.|+.+-+..+..+..+.+..+..+.++... .+|+||+|. +++ | -.+.+..+. .
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDT--AGRs~~d~~l~eel~~l~~~~ 292 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDT--VGMSQRDRNVSEQIAMLCGVG 292 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeC--CCCCccCHHHHHHHHHHhccC
Confidence 47888877753 234555555555666666778888777777654 579999997 332 2 233334432 1
Q ss_pred cCCCcEEEEecCCCHHH---HHHHHhc----CCCeE-EeCCCCHHHHHHHHH
Q 006044 104 EMDLPVIMMSADGRVSA---VMRGIRH----GACDY-LIKPIREEELKNIWQ 147 (663)
Q Consensus 104 ~~~IPVIILSa~~d~e~---v~kAl~~----GA~dY-LlKP~s~eeLk~~Iq 147 (663)
.+.-.++++++....+. +.+.|.. +..++ ++|=-....+=.++.
T Consensus 293 ~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~ 344 (767)
T PRK14723 293 RPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALD 344 (767)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHH
Confidence 23445666766554433 4455543 45555 445433333333333
No 342
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=25.65 E-value=3.7e+02 Score=33.56 Aligned_cols=128 Identities=21% Similarity=0.210 Sum_probs=70.5
Q ss_pred hhHHHHHHHcCCC-C--CCccccccccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCC
Q 006044 2 AALQRIVQSSGGS-G--YGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKG 78 (663)
Q Consensus 2 ai~~~~v~~mGGs-g--~gs~~~~dl~~~d~fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~ 78 (663)
++.+|+++.||+. | .|-...+| +.-...-+|-++-|=...|+....-+.. +|.+.+.... +++.
T Consensus 109 svA~RvAeel~~~~G~~VGY~iRfe----~~~s~~Trik~mTdGiLlrei~~D~~Ls-~ys~vIiDEa-------HERS- 175 (845)
T COG1643 109 SVAERVAEELGEKLGETVGYSIRFE----SKVSPRTRIKVMTDGILLREIQNDPLLS-GYSVVIIDEA-------HERS- 175 (845)
T ss_pred HHHHHHHHHhCCCcCceeeEEEEee----ccCCCCceeEEeccHHHHHHHhhCcccc-cCCEEEEcch-------hhhh-
Confidence 5778999999983 2 23333433 3445556788888877666555433322 3433333211 1111
Q ss_pred CceEEEEecCCCCCC-HHHHHHHH-hcc-CCCcEEEEecCCCHHHHHHHHhc-C----------CCeEEeCCCCHHH-HH
Q 006044 79 CFDVVLSDVHMPDMD-GFKLLEHI-GLE-MDLPVIMMSADGRVSAVMRGIRH-G----------ACDYLIKPIREEE-LK 143 (663)
Q Consensus 79 ~pDLVILDI~MPdmD-G~ELL~~I-r~~-~~IPVIILSa~~d~e~v~kAl~~-G----------A~dYLlKP~s~ee-Lk 143 (663)
-+.| ++.+++.+ ... ++++||+||+.-+.+...+.|.. - +.-|..++...++ +.
T Consensus 176 -----------l~tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~ 244 (845)
T COG1643 176 -----------LNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILL 244 (845)
T ss_pred -----------HHHHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHH
Confidence 0111 34566664 333 36889999988888877766652 1 1224445554555 77
Q ss_pred HHHHHHHHHh
Q 006044 144 NIWQHVVRKR 153 (663)
Q Consensus 144 ~~Iq~VLrkk 153 (663)
.++..+++..
T Consensus 245 ~ai~~~v~~~ 254 (845)
T COG1643 245 DAIVAAVDIH 254 (845)
T ss_pred HHHHHHHHHh
Confidence 7777766554
No 343
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=25.55 E-value=4.3e+02 Score=27.46 Aligned_cols=98 Identities=9% Similarity=0.008 Sum_probs=58.4
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEecCCCC--------CCHHHHHHHHhcc
Q 006044 36 VLVVDDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLE 104 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~~~gy~V~---tasng~eALelLre~k~~pDLVILDI~MPd--------mDG~ELL~~Ir~~ 104 (663)
|++.|-+....+.+...+++.+.... .-++..+.++.+.... .|.|++=-.+|. .+..+.++++|+.
T Consensus 108 iiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 108 LIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 44445555544555556666665432 2223345555555433 344332111332 2345777888777
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 105 ~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
.++||++=.+-...+.+.++.++ |+.++.-.
T Consensus 186 ~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 186 TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred CCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 78999987777778888888888 99998854
No 344
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=25.37 E-value=3.6e+02 Score=29.22 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=53.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEE-------ECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHH----------
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTT-------CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK---------- 96 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~t-------asng~eALelLre~k~~pDLVILDI~MPdmDG~E---------- 96 (663)
|+|||.-+.--.-..|.+.|. .+++|.. .++.....+.+++.+ ||+||--.-+...|.-|
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~--PDvVIn~AAyt~vD~aE~~~e~A~~vN 77 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETR--PDVVINAAAYTAVDKAESEPELAFAVN 77 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHHHhhC--CCEEEECccccccccccCCHHHHHHhH
Confidence 569999999888888888887 4566653 346667778888766 99999655554443322
Q ss_pred -----HHHHHhccCCCcEEEEecC
Q 006044 97 -----LLEHIGLEMDLPVIMMSAD 115 (663)
Q Consensus 97 -----LL~~Ir~~~~IPVIILSa~ 115 (663)
-+.++......++|.+|.+
T Consensus 78 a~~~~~lA~aa~~~ga~lVhiSTD 101 (281)
T COG1091 78 ATGAENLARAAAEVGARLVHISTD 101 (281)
T ss_pred HHHHHHHHHHHHHhCCeEEEeecc
Confidence 1222223457888888853
No 345
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.33 E-value=2.3e+02 Score=31.23 Aligned_cols=53 Identities=21% Similarity=0.117 Sum_probs=39.1
Q ss_pred ceEEEEecCCCCCC-HHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 80 FDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 80 pDLVILDI~MPdmD-G~ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
+|+|.+|.-.+..+ -.+++++|+.. +++|||+=. -...+.+..+.++||+...
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~-V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGN-VGTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEe-cCCHHHHHHHHHcCcCEEE
Confidence 59999999887654 45688888754 456766521 2367888999999998754
No 346
>PLN00191 enolase
Probab=25.32 E-value=4.7e+02 Score=30.16 Aligned_cols=108 Identities=13% Similarity=0.214 Sum_probs=68.7
Q ss_pred EeCCHHHHHHHHHHHHhCCCe----------------------EE---------EECCHHHHHHHHHHcCCCceEEEEec
Q 006044 39 VDDDITCLRILEQMLRRCLYN----------------------VT---------TCSQAAVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 39 VDDD~~~re~L~~lL~~~gy~----------------------V~---------tasng~eALelLre~k~~pDLVILDI 87 (663)
++++...++.|.+.+...+|+ +. ..-+..+++++++.....++++.+.=
T Consensus 239 ~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IED 318 (457)
T PLN00191 239 IQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIED 318 (457)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEEC
Confidence 356777778888888755543 10 11278888888887555578877765
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEec-CCCHHHHHHHHhcCCCe-EEeCCCCHHHHHHHHH
Q 006044 88 HMPDMDGFKLLEHIGLEMDLPVIMMSA-DGRVSAVMRGIRHGACD-YLIKPIREEELKNIWQ 147 (663)
Q Consensus 88 ~MPdmDG~ELL~~Ir~~~~IPVIILSa-~~d~e~v~kAl~~GA~d-YLlKP~s~eeLk~~Iq 147 (663)
-++.. .++-+++|+....+||+.==. ..+...+.++++.++++ +++|+-...-|..+++
T Consensus 319 Pl~~~-D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~ 379 (457)
T PLN00191 319 PFDQD-DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIE 379 (457)
T ss_pred CCCcc-cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHH
Confidence 55543 366667776656666553011 13467788899888776 6788876555555444
No 347
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=25.23 E-value=3.6e+02 Score=32.13 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=48.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tas-ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
++++.++|.|+...+.+++ .++.+...+ +-.+.|+...- ++.|+||+-++-++. -..++..+|+ .++++||
T Consensus 423 g~~vvvID~d~~~v~~~~~----~g~~v~~GDat~~~~L~~agi--~~A~~vvv~~~d~~~-n~~i~~~ar~~~p~~~ii 495 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLRK----FGMKVFYGDATRMDLLESAGA--AKAEVLINAIDDPQT-SLQLVELVKEHFPHLQII 495 (621)
T ss_pred CCCEEEEECCHHHHHHHHh----cCCeEEEEeCCCHHHHHhcCC--CcCCEEEEEeCCHHH-HHHHHHHHHHhCCCCeEE
Confidence 4567777777765444433 456553221 11223332221 236777766533322 2444455553 4677776
Q ss_pred EEecCCCHHHHHHHHhcCCCeE
Q 006044 111 MMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dY 132 (663)
+-+. +.+...+..+.||+..
T Consensus 496 aRa~--d~~~~~~L~~~Gad~v 515 (621)
T PRK03562 496 ARAR--DVDHYIRLRQAGVEKP 515 (621)
T ss_pred EEEC--CHHHHHHHHHCCCCEE
Confidence 6553 4455666778888754
No 348
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.22 E-value=3.4e+02 Score=28.86 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=57.5
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCC---CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHH-HHHHHhccCC
Q 006044 35 RVLVVDDDITCLRILEQML----RRCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-LLEHIGLEMD 106 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL----~~~g---y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~E-LL~~Ir~~~~ 106 (663)
.|||-|+|..+.-.+...+ +..+ .....+.+.+++.+.+.. .+|.|.+|-.-| +.+. +.+.++..++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~---gaD~I~ld~~~~--e~l~~~v~~i~~~~~ 227 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEA---GADIIMLDNMSP--EELKEAVKLLKGLPR 227 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCH--HHHHHHHHHhccCCC
Confidence 4777777654443332222 2222 233578899999988764 389999987544 2222 2233333234
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+| |..++--+.+.+.+..+.||+.+..
T Consensus 228 i~-i~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 228 VL-LEASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred eE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 54 5566677788899999999987643
No 349
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=25.20 E-value=1e+02 Score=36.06 Aligned_cols=51 Identities=18% Similarity=0.127 Sum_probs=36.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH---HHHHHHHHHcCCCceEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSD 86 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng---~eALelLre~k~~pDLVILD 86 (663)
+||||||....+-..|.++|+..++.+..+.+. ...++.+.... ||.||+-
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~~~~~~~~~~~l~~~~--~~~IIlS 55 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMS--NPVLMLS 55 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEECCCCCccCHHHHHhcC--cCEEEEc
Confidence 589999999999999999999988877765542 12244443332 6777664
No 350
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=25.03 E-value=4e+02 Score=27.88 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=54.1
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 63 CSQAAVALDILRERKGCFDVVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 63 asng~eALelLre~k~~pDLVILDI~MPdm---DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
..+..+..+.+.... .-.|+++|+.--++ .-++++++|.....+||++=..-...+.+.+.+..|++..++-
T Consensus 29 ~~dp~~~a~~~~~~g-~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 29 IGDPINAVRIFNEKE-VDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 346677777666543 23699999976642 2378999997767899988777788888999999999887764
No 351
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=25.01 E-value=8.3e+02 Score=25.76 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCH------
Q 006044 66 AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE------ 139 (663)
Q Consensus 66 g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~------ 139 (663)
..+..+.+.. .|++++=-. .+.-|+-+++.+. ..+|||+.- ... ..+.+..|..+++.++-+.
T Consensus 271 ~~~~~~~~~~----aDv~v~ps~-~e~~g~~~lEA~a--~G~PvI~s~-~~~---~~e~i~~~~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 271 KEELVELLSN----AEVFVCPSI-YEPLGIVNLEAMA--CGTPVVASA-TGG---IPEVVVDGETGFLVPPDNSDADGFQ 339 (388)
T ss_pred HHHHHHHHHh----CCEEEeCCc-cCCCChHHHHHHH--cCCCEEEeC-CCC---HHHHhhCCCceEEcCCCCCcccchH
Confidence 4444444432 577665322 2344666666653 567887632 222 3455677888999999887
Q ss_pred HHHHHHHHHHHH
Q 006044 140 EELKNIWQHVVR 151 (663)
Q Consensus 140 eeLk~~Iq~VLr 151 (663)
++|.+.+..++.
T Consensus 340 ~~l~~~i~~l~~ 351 (388)
T TIGR02149 340 AELAKAINILLA 351 (388)
T ss_pred HHHHHHHHHHHh
Confidence 788888877654
No 352
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=24.94 E-value=4.6e+02 Score=27.24 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecCCCC---CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 64 SQAAVALDILRERKGCFDVVLSDVHMPD---MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 64 sng~eALelLre~k~~pDLVILDI~MPd---mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
.+..+..+.+.+.. .-.|++.|+.-.+ ..-++++++|++..++||++--+-.+.+.+.+++..||+..++=
T Consensus 30 ~dp~~~a~~~~~~G-~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 30 GDPVELAQRYDEEG-ADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCHHHHHHHHHHcC-CCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 47777777776542 2468899987543 23456778887667899999888889999999999998877653
No 353
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=24.92 E-value=5.9e+02 Score=26.12 Aligned_cols=104 Identities=15% Similarity=0.211 Sum_probs=54.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~g--y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
.++++|+.+.+. .+.+++++...+ ..|.......+..+.+.. .|++++--.. +.-|..+++.+. ..+|||
T Consensus 219 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPL-RATLERLIKALGLSNRVKLLGLRDDIAAYYNA----ADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCc-HHHHHHHHHhcCCCCcEEEecccccHHHHHHh----hceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 356666655443 234444444432 234333333333344332 4666654332 223566666653 466777
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
+ +.... ..+.+.. .+++.++.+.+++.+++..++
T Consensus 291 ~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll 324 (360)
T cd04951 291 A-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEIL 324 (360)
T ss_pred E-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHH
Confidence 5 32222 2222222 568888999999999998876
No 354
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=24.88 E-value=3.6e+02 Score=26.47 Aligned_cols=89 Identities=13% Similarity=0.081 Sum_probs=57.0
Q ss_pred HHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEecCCCC-----CCHHHHHHHHh---ccCCCcEEEEecCCC
Q 006044 48 ILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIG---LEMDLPVIMMSADGR 117 (663)
Q Consensus 48 ~L~~lL~~~gy~V~t--asng~eALelLre~k~~pDLVILDI~MPd-----mDG~ELL~~Ir---~~~~IPVIILSa~~d 117 (663)
.....|+..|+.+.. +..+..-+..+.... ||.|-+|..+-. .....+++.+. ...++.|| .++-++
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l~--~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRLP--VDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVV-AEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhCC--CCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEE-EecCCC
Confidence 334556667887754 555666677777655 999999975431 11334555552 33455544 566777
Q ss_pred HHHHHHHHhcCCC----eEEeCCCCH
Q 006044 118 VSAVMRGIRHGAC----DYLIKPIRE 139 (663)
Q Consensus 118 ~e~v~kAl~~GA~----dYLlKP~s~ 139 (663)
.+....+.+.|++ .|+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 7778888899986 367788654
No 355
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=24.87 E-value=2.3e+02 Score=29.70 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=32.6
Q ss_pred CCCcEEEEecC------CCHHHHHHHHhcCCCeEEeCCCCHHHHHH
Q 006044 105 MDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKN 144 (663)
Q Consensus 105 ~~IPVIILSa~------~d~e~v~kAl~~GA~dYLlKP~s~eeLk~ 144 (663)
-.+|||+|+-+ .+..++..+-++||.+||.-.+.++|-..
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 35899998754 46788899999999999999888887654
No 356
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=24.77 E-value=2.3e+02 Score=31.20 Aligned_cols=56 Identities=14% Similarity=0.120 Sum_probs=41.6
Q ss_pred ceEEEEecCCCC-CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 80 FDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 80 pDLVILDI~MPd-mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
.|+|++|.--.. ..-++.+++|++..+.|.|+.-.-...+.+..++++||+....-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 599999984433 33567788887666667666655678899999999999987643
No 357
>PRK10867 signal recognition particle protein; Provisional
Probab=24.50 E-value=7.2e+02 Score=28.48 Aligned_cols=102 Identities=22% Similarity=0.236 Sum_probs=49.7
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHHhCCCeEEEE---CCHHH----HHHHHHHcCCCceEEEEecC--CC-CCCHHHHHH
Q 006044 33 GLRVLVVDDDITC---LRILEQMLRRCLYNVTTC---SQAAV----ALDILRERKGCFDVVLSDVH--MP-DMDGFKLLE 99 (663)
Q Consensus 33 giRVLIVDDD~~~---re~L~~lL~~~gy~V~ta---sng~e----ALelLre~k~~pDLVILDI~--MP-dmDG~ELL~ 99 (663)
+.+|++|+-|..- .+.|+.+.+..+..+... .+..+ +++..+.. .+|+||+|.- ++ +.+.++-+.
T Consensus 129 G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~~~--~~DvVIIDTaGrl~~d~~lm~eL~ 206 (433)
T PRK10867 129 KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAKEN--GYDVVIVDTAGRLHIDEELMDELK 206 (433)
T ss_pred CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHHhc--CCCEEEEeCCCCcccCHHHHHHHH
Confidence 6789999988532 233444444545555433 23333 33333333 4999999983 22 123344444
Q ss_pred HHhc--cCCCcEEEEecCCCHHHH--HHHHh--cCCCeEE-eCC
Q 006044 100 HIGL--EMDLPVIMMSADGRVSAV--MRGIR--HGACDYL-IKP 136 (663)
Q Consensus 100 ~Ir~--~~~IPVIILSa~~d~e~v--~kAl~--~GA~dYL-lKP 136 (663)
.+.. .++--+.++.+....+.+ .+.|. .+..++| +|-
T Consensus 207 ~i~~~v~p~evllVlda~~gq~av~~a~~F~~~~~i~giIlTKl 250 (433)
T PRK10867 207 AIKAAVNPDEILLVVDAMTGQDAVNTAKAFNEALGLTGVILTKL 250 (433)
T ss_pred HHHHhhCCCeEEEEEecccHHHHHHHHHHHHhhCCCCEEEEeCc
Confidence 4432 233335555554432332 23333 3455554 453
No 358
>PRK10060 RNase II stability modulator; Provisional
Probab=24.49 E-value=5.7e+02 Score=30.37 Aligned_cols=98 Identities=14% Similarity=0.127 Sum_probs=66.8
Q ss_pred HHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEecCC----C-CCCHHHHHHHHh---ccCCCcEEEEecCCC
Q 006044 48 ILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHIG---LEMDLPVIMMSADGR 117 (663)
Q Consensus 48 ~L~~lL~~~gy~V~--tasng~eALelLre~k~~pDLVILDI~M----P-dmDG~ELL~~Ir---~~~~IPVIILSa~~d 117 (663)
.+...|+..|+.+. -+..+...+..++..+ +|.|=+|-.+ . +.....+++.|- ...++.||+ .+-.+
T Consensus 545 ~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l~--~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA-eGVEt 621 (663)
T PRK10060 545 SVIQQFSQLGAQVHLDDFGTGYSSLSQLARFP--IDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA-EGVET 621 (663)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHHhCC--CCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE-ecCCC
Confidence 33455667788775 4778888899998765 9999999533 2 233455666552 345666664 45556
Q ss_pred HHHHHHHHhcCCCe----EEeCCCCHHHHHHHHHH
Q 006044 118 VSAVMRGIRHGACD----YLIKPIREEELKNIWQH 148 (663)
Q Consensus 118 ~e~v~kAl~~GA~d----YLlKP~s~eeLk~~Iq~ 148 (663)
.+....+.+.|++. |+.||...+++...++.
T Consensus 622 ~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 622 AKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred HHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 66666677888863 68899999998876654
No 359
>PRK08185 hypothetical protein; Provisional
Probab=24.48 E-value=2.6e+02 Score=30.18 Aligned_cols=84 Identities=17% Similarity=0.343 Sum_probs=57.4
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEecC----------CCCCCHHHHHHHHhccCCCcEEEEecCC-CHHHHHHHHhcCCCe
Q 006044 63 CSQAAVALDILRERKGCFDVVLSDVH----------MPDMDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACD 131 (663)
Q Consensus 63 asng~eALelLre~k~~pDLVILDI~----------MPdmDG~ELL~~Ir~~~~IPVIILSa~~-d~e~v~kAl~~GA~d 131 (663)
+++.++|.+.++... .|.+-.-+- -|+.+ +++++.|++..++|+++.-+.. ..+...+|++.|+.-
T Consensus 148 ~t~peea~~f~~~Tg--vD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 148 YTDPEQAEDFVSRTG--VDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred CCCHHHHHHHHHhhC--CCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 568889988887654 787777330 25566 9999999877789998876653 456678899999754
Q ss_pred EEeCCCCHHHHHHHHHHHHHHh
Q 006044 132 YLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 132 YLlKP~s~eeLk~~Iq~VLrkk 153 (663)
.=. -.+|+.++...++..
T Consensus 225 iNi----~T~l~~a~~~~~~~~ 242 (283)
T PRK08185 225 INI----SSDMKYAFFKKVREI 242 (283)
T ss_pred EEe----ChHHHHHHHHHHHHH
Confidence 321 235555555555543
No 360
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=24.44 E-value=1.9e+02 Score=29.72 Aligned_cols=70 Identities=11% Similarity=0.053 Sum_probs=49.1
Q ss_pred CCeEEEECCHHHHHHHHHHcCCCceEEEEecCC---CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 57 LYNVTTCSQAAVALDILRERKGCFDVVLSDVHM---PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 57 gy~V~tasng~eALelLre~k~~pDLVILDI~M---PdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
++.|.+..+-+++.+++... .|+|-+|-.. | .+--+++++|++.. .++|.--...+....|.++|++ ++
T Consensus 45 ~~~V~ITPT~~ev~~l~~aG---adIIAlDaT~R~Rp-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D-~I 116 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEAG---ADIIALDATDRPRP-ETLEELIREIKEKY---QLVMADISTLEEAINAAELGFD-II 116 (192)
T ss_dssp TSS--BS-SHHHHHHHHHCT----SEEEEE-SSSS-S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-S-EE
T ss_pred CCCeEECCCHHHHHHHHHcC---CCEEEEecCCCCCC-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCC-EE
Confidence 46788888888988888643 7999999865 5 67778889998655 6677777889999999999965 54
Q ss_pred e
Q 006044 134 I 134 (663)
Q Consensus 134 l 134 (663)
.
T Consensus 117 ~ 117 (192)
T PF04131_consen 117 G 117 (192)
T ss_dssp E
T ss_pred E
Confidence 3
No 361
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=24.44 E-value=1.7e+02 Score=31.27 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=42.6
Q ss_pred HHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 006044 72 ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (663)
Q Consensus 72 lLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s 138 (663)
++++.. ||++|.=---|..-|-.-.+.+-...++|.|++|...... ..++++..-.+||+-+.+
T Consensus 54 ~~~~~~--pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 54 MLKEWD--PDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHHHH----SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred HHHhhC--CCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 345665 9998876555566788888887667899999999755444 467888888888776654
No 362
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=24.43 E-value=4.1e+02 Score=29.06 Aligned_cols=63 Identities=17% Similarity=0.143 Sum_probs=39.3
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006044 34 LRVLVVDDDITCL----RILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (663)
Q Consensus 34 iRVLIVDDD~~~r----e~L~~lL~~~gy~V~tas---------ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~ 100 (663)
-|+|||-|..... +.+...|+..++.+..+. +..++++.+++.. +|.||- +.+..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEG--CDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcC--CCEEEE---eCCchHHHHHHH
Confidence 3889887765433 567777776665554332 2445666666554 898775 345566666666
Q ss_pred H
Q 006044 101 I 101 (663)
Q Consensus 101 I 101 (663)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 5
No 363
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=24.37 E-value=5.8e+02 Score=27.93 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=40.2
Q ss_pred HHHHHHhccC--CCcEEEEecCCCHHHHHHHHhcCCCe------EEeC-CCCHHHHHHHHHHHHH
Q 006044 96 KLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACD------YLIK-PIREEELKNIWQHVVR 151 (663)
Q Consensus 96 ELL~~Ir~~~--~IPVIILSa~~d~e~v~kAl~~GA~d------YLlK-P~s~eeLk~~Iq~VLr 151 (663)
+.++++++.. ++|||..-+-.+.+.+.+.+.+||+. ++.+ |.-..++++-++..++
T Consensus 277 ~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 277 EVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLR 341 (344)
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 3555665443 79999999999999999999999974 4454 6655666665555544
No 364
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=24.16 E-value=3.7e+02 Score=29.39 Aligned_cols=63 Identities=22% Similarity=0.183 Sum_probs=40.9
Q ss_pred cEEEEEeCCHH-HHHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006044 34 LRVLVVDDDIT-CLRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 34 iRVLIVDDD~~-~re~L~~lL~~~gy~V~ta---------sng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
-|+|||-|... ....+...|+..+..+..+ ++..++++.+++.. +|+||- +.+..-+++.+.+
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~D~IIa---vGGGs~~D~aK~i 96 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFG--PDAVLA---VGGGSVLDTAKAL 96 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcC--cCEEEE---eCCcHHHHHHHHH
Confidence 37888877654 4667788888766555433 23556777777654 898874 4455566666655
No 365
>PRK11923 algU RNA polymerase sigma factor AlgU; Provisional
Probab=24.15 E-value=1.5e+02 Score=28.74 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHH
Q 006044 227 VELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHL 268 (663)
Q Consensus 227 vELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASHL 268 (663)
.++++.+.+++..|-... +.++.+.-+.|++.++||..|
T Consensus 126 ~~~~~~l~~~l~~L~~~~---r~v~~l~~~~g~s~~eIA~~l 164 (193)
T PRK11923 126 DEIEGTVHRTIQQLPEDL---RTALTLREFDGLSYEDIASVM 164 (193)
T ss_pred HHHHHHHHHHHHhCCHHH---hHHHhhHHhcCCCHHHHHHHH
Confidence 345566777777774221 235555456666665555544
No 366
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=24.05 E-value=2.6e+02 Score=29.57 Aligned_cols=74 Identities=15% Similarity=0.139 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEecC--C--CC---CCHHHHHHHHhccCCCcEEEEecC-CC-----HHHHHHHHhcCCCe
Q 006044 65 QAAVALDILRERKGCFDVVLSDVH--M--PD---MDGFKLLEHIGLEMDLPVIMMSAD-GR-----VSAVMRGIRHGACD 131 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~--M--Pd---mDG~ELL~~Ir~~~~IPVIILSa~-~d-----~e~v~kAl~~GA~d 131 (663)
+...|++.++.. +..+|+|+.-. . |- .--+..+..+++..++||++=+.+ .. ......|+.+||++
T Consensus 147 e~~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~g 225 (260)
T TIGR01361 147 EWLYAAEYILSS-GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADG 225 (260)
T ss_pred HHHHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCE
Confidence 345667777654 34689998851 1 21 112344555565568999984444 33 45566788999998
Q ss_pred -EEeCCCCH
Q 006044 132 -YLIKPIRE 139 (663)
Q Consensus 132 -YLlKP~s~ 139 (663)
+|-|-+++
T Consensus 226 l~iE~H~t~ 234 (260)
T TIGR01361 226 LMIEVHPDP 234 (260)
T ss_pred EEEEeCCCc
Confidence 67775544
No 367
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.96 E-value=3.3e+02 Score=28.15 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCC-CHHHHHHHH-hccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHI-GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPdm-DG~ELL~~I-r~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+..++++.+++.. -.+|++|+.--++ .|++ .+ +...++|||.--+-.+.+.+.++.+.|+++.+.
T Consensus 144 ~~~~~~~~~~~~~--~~ii~t~i~~dGt~~G~d---~l~~~~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 144 KVEDAYEMLKNYV--NRFIYTSIERDGTLTGIE---EIERFWGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred CHHHHHHHHHHHh--CEEEEEeccchhcccCHH---HHHHhcCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 4456666666542 4799999987664 6777 33 222579999988888888999999999998654
No 368
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=23.91 E-value=6.2e+02 Score=27.12 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=64.3
Q ss_pred HHHHHHHhCCCeEEEECCHH--HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcEEEEecCCCHHHHH
Q 006044 48 ILEQMLRRCLYNVTTCSQAA--VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPVIMMSADGRVSAVM 122 (663)
Q Consensus 48 ~L~~lL~~~gy~V~tasng~--eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~IPVIILSa~~d~e~v~ 122 (663)
.++.-|......|.....-. -..|.+... .||-+++|..-...|.-.++.+|+. .+..|||=+. -.++..+.
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~a--GfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p-~g~~~~Ik 83 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATA--GFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPP-VGDPVMIK 83 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhc--CCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCC-CCCHHHHH
Confidence 46666765545555433332 233444443 4999999998888888888888863 3445655443 56788899
Q ss_pred HHHhcCCCeEEeCCCC-HHHHHHHHH
Q 006044 123 RGIRHGACDYLIKPIR-EEELKNIWQ 147 (663)
Q Consensus 123 kAl~~GA~dYLlKP~s-~eeLk~~Iq 147 (663)
+.++.||...|.-=++ .++-+..+.
T Consensus 84 q~LD~GAqtlliPmV~s~eqAr~~V~ 109 (255)
T COG3836 84 QLLDIGAQTLLIPMVDTAEQARQAVA 109 (255)
T ss_pred HHHccccceeeeeccCCHHHHHHHHH
Confidence 9999999998885554 455544443
No 369
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=23.77 E-value=5.3e+02 Score=27.49 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=0.0
Q ss_pred EEEEeCC-------HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC--C
Q 006044 36 VLVVDDD-------ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM--D 106 (663)
Q Consensus 36 VLIVDDD-------~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~--~ 106 (663)
|||.|++ ....+.+++.+........++.+.+++.+.+... +|.|.+|-. +.+.++++.... +
T Consensus 155 vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~g---aDyI~ld~~-----~~e~l~~~~~~~~~~ 226 (268)
T cd01572 155 VLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEAG---ADIIMLDNM-----SPEELREAVALLKGR 226 (268)
T ss_pred eeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcC---CCEEEECCc-----CHHHHHHHHHHcCCC
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+| |+.++--..+.+.+..+.|++.+-+
T Consensus 227 ip-i~AiGGI~~~ni~~~a~~Gvd~Iav 253 (268)
T cd01572 227 VL-LEASGGITLENIRAYAETGVDYISV 253 (268)
T ss_pred Cc-EEEECCCCHHHHHHHHHcCCCEEEE
No 370
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=23.75 E-value=8e+02 Score=27.70 Aligned_cols=92 Identities=17% Similarity=0.112 Sum_probs=52.5
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecC--CCCCCHHH---HHHHHhc
Q 006044 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVH--MPDMDGFK---LLEHIGL 103 (663)
Q Consensus 32 ~giRVLIVDDD~~---~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~--MPdmDG~E---LL~~Ir~ 103 (663)
.+.+|.+|+-|.. ..+.|+.+.+..+..+..+.+..+..+.+... ..+|+||+|.- ++ .|-.. +.+.+..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~ 282 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMKLAEMKELLNA 282 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHHHHHHHHHHHh
Confidence 3568999988863 22334444444466677777776666666554 35999999983 22 23332 2222222
Q ss_pred -cCC-CcEEEEecCCCHHHHHHHH
Q 006044 104 -EMD-LPVIMMSADGRVSAVMRGI 125 (663)
Q Consensus 104 -~~~-IPVIILSa~~d~e~v~kAl 125 (663)
.++ -.++++++......+.+.+
T Consensus 283 ~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 283 CGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred cCCCCeEEEEEcCCCCHHHHHHHH
Confidence 223 3567788776665555443
No 371
>PRK14967 putative methyltransferase; Provisional
Probab=23.69 E-value=7.1e+02 Score=25.05 Aligned_cols=48 Identities=23% Similarity=0.084 Sum_probs=31.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEec
Q 006044 35 RVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI 87 (663)
+|..+|-++...+..+.-+...+..+. ...+..+ .+.. ..+|+||++.
T Consensus 61 ~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~--~~fD~Vi~np 109 (223)
T PRK14967 61 SVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEF--RPFDVVVSNP 109 (223)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccC--CCeeEEEECC
Confidence 899999999888887777766554443 2334333 2222 3499999983
No 372
>PRK13695 putative NTPase; Provisional
Probab=23.68 E-value=4.6e+02 Score=25.13 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=39.6
Q ss_pred CceEEEEec--CCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHHHHhc--CCCeEEeCCCCHHHHHHHHHHHH
Q 006044 79 CFDVVLSDV--HMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRGIRH--GACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 79 ~pDLVILDI--~MPdmDG~ELL~~Ir--~~~~IPVIILSa~~d~e~v~kAl~~--GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
.+|++|+|= .+...+ -.+.+.|. .....|+|+++.........+.+.. +..=|-..|-+.++|...+...+
T Consensus 96 ~~~~lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 96 EADVIIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCEEEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 589999995 232222 22333332 1456788888776543333333333 33335567778888877665543
No 373
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=23.60 E-value=8.4e+02 Score=25.31 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=36.3
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 94 G~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|..+++.+. ..+|||.-.... ..+.+..|..+++..|-+.++|.+++.+++.
T Consensus 284 ~~~~~EA~a--~G~PvI~s~~~~----~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 335 (367)
T cd05844 284 PVVLLEAQA--SGVPVVATRHGG----IPEAVEDGETGLLVPEGDVAALAAALGRLLA 335 (367)
T ss_pred chHHHHHHH--cCCCEEEeCCCC----chhheecCCeeEEECCCCHHHHHHHHHHHHc
Confidence 556666663 467888533222 3344566778899999999999999988764
No 374
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=23.58 E-value=9.3e+02 Score=25.81 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=53.7
Q ss_pred ccEEEEE-eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006044 33 GLRVLVV-DDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 33 giRVLIV-DDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVII 111 (663)
.++++++ .++...++.++++.+..+-.|.......+..+++.. .|+++++ + .|..+++.+. ..+|+|+
T Consensus 230 ~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~----aD~~v~~---~--gg~t~~EA~a--~g~PvI~ 298 (380)
T PRK13609 230 DLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRV----TSCMITK---P--GGITLSEAAA--LGVPVIL 298 (380)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHh----ccEEEeC---C--CchHHHHHHH--hCCCEEE
Confidence 3565554 555555666666665433234433333333333332 5777763 2 2555666653 4678776
Q ss_pred EecCC--CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 112 MSADG--RVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 112 LSa~~--d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
..... ..+.+....+.|+ ...+.+.++|.+.+..++.
T Consensus 299 ~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 299 YKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 43221 1222222234454 2334577888888877753
No 375
>PRK04457 spermidine synthase; Provisional
Probab=23.58 E-value=8.1e+02 Score=25.70 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=37.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC--CCeEE-EECCHHHHHHHHHHcCCCceEEEEec
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC--LYNVT-TCSQAAVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~--gy~V~-tasng~eALelLre~k~~pDLVILDI 87 (663)
..+|.+||=++...+..++.+... ...+. ...++.+.+.. ....||+|++|.
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---~~~~yD~I~~D~ 144 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---HRHSTDVILVDG 144 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh---CCCCCCEEEEeC
Confidence 468999999999999988887532 23343 45676666553 234599999996
No 376
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=23.48 E-value=2.6e+02 Score=30.45 Aligned_cols=76 Identities=9% Similarity=0.144 Sum_probs=47.9
Q ss_pred cEEEEEeCCHHH---HHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006044 34 LRVLVVDDDITC---LRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 34 iRVLIVDDD~~~---re~L~~lL~~~gy~V~ta---------sng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
-|+|||-|.... .+.+...|+..+..+..+ .+..++.+..++.. +|+||- +.+..-+++.+.+
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~--~d~iia---vGGGs~~D~aK~i 97 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQE--ADMIFA---VGGGKAIDTVKVL 97 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcC--CCEEEE---eCCcHHHHHHHHH
Confidence 589999886543 445666676655443322 23345555555544 899885 4567778888887
Q ss_pred hccCCCcEEEEec
Q 006044 102 GLEMDLPVIMMSA 114 (663)
Q Consensus 102 r~~~~IPVIILSa 114 (663)
.....+|+|.+-.
T Consensus 98 a~~~~~p~i~VPT 110 (345)
T cd08171 98 ADKLGKPVFTFPT 110 (345)
T ss_pred HHHcCCCEEEecC
Confidence 6555778877644
No 377
>PRK15201 fimbriae regulatory protein FimW; Provisional
Probab=23.36 E-value=83 Score=32.20 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=78.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHH-HHHH--hccCCC
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCL---YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKL-LEHI--GLEMDL 107 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~g---y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~EL-L~~I--r~~~~I 107 (663)
+.|.|-|.+.-+..+|+-++.+.. ..-..+-..+ .-+..|+.++.+ |.|.+.. +-+| ......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 70 (198)
T PRK15201 2 LSIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPE--------EIDNADIAFLAL---DDDWFSAGCYQIPMHTQHQL 70 (198)
T ss_pred cceeeccccchhhhhHHHHHHHHHHHHHHHhccCChh--------hccccceeeeec---chhhhhCCceecccccccee
Confidence 456666777666666665554321 1101111111 112357777655 2333321 1122 122345
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCe----EEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHh
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACD----YLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYAS 183 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~d----YLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~s~sl~~~~~~klt~~Eie~ls 183 (663)
.||+.-..+....+ ...|- |+..--+.+++.....-+++++..... ... +.-.......++.+|.+++.
T Consensus 71 ~~~~~~~~~~~~~~-----~~~~~~~~~~iyr~d~v~~i~~k~~~il~~~al~~~-~~~-~~~~~~~~~~LSpRErEVLr 143 (198)
T PRK15201 71 RVIICNKCDKEKLM-----FRPCLYMLPHIYREDDVEEITRKMILILHKRALRHS-VPS-GICHYCTTRHFSVTERHLLK 143 (198)
T ss_pred EEEEeccccchhhh-----hchhHhhcchhhccccHHHHHHHHHHHHHHHHHHhh-CCc-hhccccCCCCCCHHHHHHHH
Confidence 66766555444333 23333 444455566665555445543321111 100 00011223458999999999
Q ss_pred hhccCCcchhhhhhhccccccc
Q 006044 184 SVNEGTEGTFKAQRKRISAKEE 205 (663)
Q Consensus 184 sv~eGse~~lka~~k~Is~Kee 205 (663)
.+.+|.....++....++.++.
T Consensus 144 LLAqGkTnKEIAe~L~IS~rTV 165 (198)
T PRK15201 144 LIASGYHLSETAALLSLSEEQT 165 (198)
T ss_pred HHHCCCCHHHHHHHhCCCHHHH
Confidence 9999999999999888887654
No 378
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=23.31 E-value=3.1e+02 Score=31.94 Aligned_cols=67 Identities=19% Similarity=0.161 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPd-mDG~ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+..+-.+.|-+.. .|+|.+|.--.. ..-++++++||.. ++++||+ ..-...+.+..++++||+....
T Consensus 248 ~~~~r~~~l~~ag--~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLVKAG--VDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHHHcC--CCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 3344444554443 899999994211 1234788888754 5666664 3334677789999999998754
No 379
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=23.22 E-value=1e+03 Score=26.23 Aligned_cols=97 Identities=11% Similarity=0.121 Sum_probs=59.6
Q ss_pred EEEEEeCC----HHHHHHHHHHHHhCC-CeE--EEECCHHHHHHHHHHcCCCceEEEEecCCC-----------CCC--H
Q 006044 35 RVLVVDDD----ITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMD--G 94 (663)
Q Consensus 35 RVLIVDDD----~~~re~L~~lL~~~g-y~V--~tasng~eALelLre~k~~pDLVILDI~MP-----------dmD--G 94 (663)
.++++|-- ....+.++.+-+... ..| ..+.+.+.|..+++. ..|.|..-+.-- +.. +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCchH
Confidence 56666652 344444555444332 222 124577777776653 267776442111 111 3
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 95 ~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+..+..++...++|||.-.+-.....+.+|+.+||+....
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmi 226 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMI 226 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEee
Confidence 4566666655679999988888889999999999998755
No 380
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=23.21 E-value=4.5e+02 Score=29.11 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHH
Q 006044 34 LRVLVVDDDITC-----LRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLE 99 (663)
Q Consensus 34 iRVLIVDDD~~~-----re~L~~lL~~~gy~V~tas---------ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~ 99 (663)
-|+|||-|.... .+.+...|+..+..+..+. +..++.+.+++.. +|+||. ..+..-+++.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFG--AQAVIA---IGGGSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcC--CCEEEE---eCCccHHHHHH
Confidence 379999887654 3567888887776655443 3446666666654 898874 34555555555
Q ss_pred HH
Q 006044 100 HI 101 (663)
Q Consensus 100 ~I 101 (663)
.+
T Consensus 102 ~i 103 (383)
T cd08186 102 SA 103 (383)
T ss_pred HH
Confidence 54
No 381
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=23.17 E-value=2e+02 Score=28.44 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=30.3
Q ss_pred CCceEEEEecCCCC-----CCHHHHHHHHhccCCCcEEEEecCCCHHHHHH
Q 006044 78 GCFDVVLSDVHMPD-----MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (663)
Q Consensus 78 ~~pDLVILDI~MPd-----mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~k 123 (663)
..+||||+|=-+.- .+--++++.|+..+.--=+|+|++.-.+...+
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e 144 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIE 144 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHH
Confidence 35999999953321 33446777777666655677888877665544
No 382
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=23.16 E-value=2.7e+02 Score=32.00 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 67 AVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 67 ~eALelLre~k~~pDLVILDI~MPd-mDG~ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
.++.+.+.+.. .|+|.+|..-.. .+-++.++.|+.. +++|||+ -.-.+.+.+..++++||+...
T Consensus 230 ~e~a~~L~~ag--vdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEAG--VDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHhC--CCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 45555555544 899999974332 3456778888755 4888887 455677888999999998663
No 383
>PRK00811 spermidine synthase; Provisional
Probab=23.13 E-value=5.8e+02 Score=27.09 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=39.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC------CCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCC
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRC------LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~------gy~V~-tasng~eALelLre~k~~pDLVILDI~MPd 91 (663)
..-+|.+||=|+...+..++.+... .-+|. ...++.+.+.. ....||+||+|..-|.
T Consensus 99 ~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~---~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 99 SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE---TENSFDVIIVDSTDPV 162 (283)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---CCCcccEEEECCCCCC
Confidence 3358999999999999999988642 12332 45566554433 3345999999986553
No 384
>PLN02727 NAD kinase
Probab=22.89 E-value=3e+02 Score=34.61 Aligned_cols=101 Identities=16% Similarity=0.167 Sum_probs=60.1
Q ss_pred cEEEEEeCC-HHHHH---HHHHHHHhC-CCeEEEECCHHHHHHHH--------------HHcCCCceEEEEecCCCCCCH
Q 006044 34 LRVLVVDDD-ITCLR---ILEQMLRRC-LYNVTTCSQAAVALDIL--------------RERKGCFDVVLSDVHMPDMDG 94 (663)
Q Consensus 34 iRVLIVDDD-~~~re---~L~~lL~~~-gy~V~tasng~eALelL--------------re~k~~pDLVILDI~MPdmDG 94 (663)
-+|+||-.. ....+ .|..+|... +.+|..-....+.+..+ .+....+|+||+ -+.||
T Consensus 679 rtVgIV~K~~~ea~~~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIv----LGGDG 754 (986)
T PLN02727 679 KTVLLLKKLGQELMEEAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVAC----LGGDG 754 (986)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEE----ECCcH
Confidence 468888433 23333 345555554 77777655555443111 111113677776 36777
Q ss_pred HHHHHHHh--ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 95 FKLLEHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 95 ~ELL~~Ir--~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
- +|+..+ ....+||+-+. .|-.+||. .+..+++...|..++.+.
T Consensus 755 T-lLrAar~~~~~~iPILGIN-------------lGrLGFLT-di~~ee~~~~L~~Il~G~ 800 (986)
T PLN02727 755 V-ILHASNLFRGAVPPVVSFN-------------LGSLGFLT-SHYFEDFRQDLRQVIHGN 800 (986)
T ss_pred H-HHHHHHHhcCCCCCEEEEe-------------CCCccccc-cCCHHHHHHHHHHHHcCC
Confidence 3 555554 23567887543 57778888 488899999999988664
No 385
>PRK00077 eno enolase; Provisional
Probab=22.85 E-value=6e+02 Score=28.81 Aligned_cols=106 Identities=15% Similarity=0.268 Sum_probs=61.9
Q ss_pred eCCHHHHHHHHHHHHhCCCe----EEEEC--------------------CHHHHHHHHHHcCCCceEEEEecCCCCCCHH
Q 006044 40 DDDITCLRILEQMLRRCLYN----VTTCS--------------------QAAVALDILRERKGCFDVVLSDVHMPDMDGF 95 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~----V~tas--------------------ng~eALelLre~k~~pDLVILDI~MPdmDG~ 95 (663)
+++...++.+++.++..+|+ |..+- +.+++++.+...-..++++.+.==++..| +
T Consensus 213 ~~~~e~l~~lreAi~~ag~~~G~di~l~lD~aas~~~~~~~y~~~~~~~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D-~ 291 (425)
T PRK00077 213 KSNEEALDLILEAIEKAGYKPGEDIALALDCAASEFYKDGKYVLEGEGLTSEEMIDYLAELVDKYPIVSIEDGLDEND-W 291 (425)
T ss_pred cchHHHHHHHHHHHHHhcCCCCCceEEEEehhhhhcccCCeeeccCCcCCHHHHHHHHHHHHhhCCcEEEEcCCCCcc-H
Confidence 56667777888888776554 22222 33455655554433478877765554433 5
Q ss_pred HHHHHHhccC--CCcEEEEecC---CCHHHHHHHHhcCCCe-EEeCCCCHHHHHHHHHH
Q 006044 96 KLLEHIGLEM--DLPVIMMSAD---GRVSAVMRGIRHGACD-YLIKPIREEELKNIWQH 148 (663)
Q Consensus 96 ELL~~Ir~~~--~IPVIILSa~---~d~e~v~kAl~~GA~d-YLlKP~s~eeLk~~Iq~ 148 (663)
+-.++|+... .+||+ ... .......++++.++++ +++|+-..--|..+++.
T Consensus 292 ~g~~~L~~~~~~~ipI~--gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~~i 348 (425)
T PRK00077 292 EGWKLLTEKLGDKVQLV--GDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETLDA 348 (425)
T ss_pred HHHHHHHHhcCCCCeEE--cCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHH
Confidence 5555565433 45543 333 2477788888888766 57888765555554443
No 386
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=22.75 E-value=6.5e+02 Score=27.34 Aligned_cols=95 Identities=9% Similarity=0.073 Sum_probs=57.7
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEE------EC---CHHHHHHHHHHcCCCceEEEEecCC-CCC----CHHHHHHHHh
Q 006044 37 LVVDDDITCLRILEQMLRRCLYNVTT------CS---QAAVALDILRERKGCFDVVLSDVHM-PDM----DGFKLLEHIG 102 (663)
Q Consensus 37 LIVDDD~~~re~L~~lL~~~gy~V~t------as---ng~eALelLre~k~~pDLVILDI~M-Pdm----DG~ELL~~Ir 102 (663)
.+..|-....+.++.+-....+.|.. .. +..+..+.+.+. ..|.|.+.-.. +++ -.++++++++
T Consensus 113 ~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~--G~d~i~vh~rt~~~~~~G~a~~~~i~~ik 190 (321)
T PRK10415 113 ALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC--GIQALTIHGRTRACLFNGEAEYDSIRAVK 190 (321)
T ss_pred HHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh--CCCEEEEecCccccccCCCcChHHHHHHH
Confidence 34456666666666665554444431 11 223333444443 36766544322 211 2378888888
Q ss_pred ccCCCcEEEEecCCCHHHHHHHHh-cCCCeEE
Q 006044 103 LEMDLPVIMMSADGRVSAVMRGIR-HGACDYL 133 (663)
Q Consensus 103 ~~~~IPVIILSa~~d~e~v~kAl~-~GA~dYL 133 (663)
+..++|||..-.-.+.+.+.++++ .||+...
T Consensus 191 ~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 191 QKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred HhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 777899998877778888999997 5887754
No 387
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=22.71 E-value=3.7e+02 Score=28.89 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=51.4
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecC--C---CC--CCHHHHHHHHhccCCCcEEEEecCC-CHHHHHHHHhcCCCeEE
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVH--M---PD--MDGFKLLEHIGLEMDLPVIMMSADG-RVSAVMRGIRHGACDYL 133 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~--M---Pd--mDG~ELL~~Ir~~~~IPVIILSa~~-d~e~v~kAl~~GA~dYL 133 (663)
.+++.++|.+..++.. +|.+-.-+- - ++ .=|++.+++|++..++|+++.-+.. ..+.+.++++.|++..=
T Consensus 151 s~t~~eea~~f~~~tg--~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAEETD--VDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHHhhC--CCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 4788999988886543 787776331 1 11 2379999999877789998887443 56778889999998764
Q ss_pred e
Q 006044 134 I 134 (663)
Q Consensus 134 l 134 (663)
.
T Consensus 229 v 229 (281)
T PRK06806 229 V 229 (281)
T ss_pred E
Confidence 4
No 388
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=22.62 E-value=2.9e+02 Score=31.51 Aligned_cols=63 Identities=27% Similarity=0.361 Sum_probs=45.7
Q ss_pred CCCCccEEEEEeCCHHHHHHHH--HHHHhC------CCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCC
Q 006044 29 QFPAGLRVLVVDDDITCLRILE--QMLRRC------LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93 (663)
Q Consensus 29 ~fP~giRVLIVDDD~~~re~L~--~lL~~~------gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmD 93 (663)
.+|.-..|-.||=||...+.-+ ..|+.. .-+|..+. ++|...++...+.||.||.|+--|+..
T Consensus 309 kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tp 379 (508)
T COG4262 309 KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTP 379 (508)
T ss_pred hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCc
Confidence 3566678999999999888877 555543 23455443 467777877767799999998777654
No 389
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.60 E-value=1.1e+03 Score=26.37 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCC-------CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHM-------PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~M-------PdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+..+..+.+.+.. .|+|.++-+. +..+..++.+.++. .++|||. ..-.+.+.+.++++.||+..+.
T Consensus 142 ~~~e~a~~l~eaG--vd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEAG--VDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHCC--CCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 4556666666544 8999997542 22245555555554 5789887 4445677888899999998754
No 390
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=22.59 E-value=5.2e+02 Score=26.00 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCeEEEEC--CHH---HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006044 46 LRILEQMLRRCLYNVTTCS--QAA---VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (663)
Q Consensus 46 re~L~~lL~~~gy~V~tas--ng~---eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~ 115 (663)
...+++.+++.+|.+..+. +.+ +.++.+.... +|-||+ +|......+.+.+.....+||+++...
T Consensus 20 ~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~~--vdgiii---~~~~~~~~~~~~~~~~~~ipvv~~~~~ 89 (260)
T cd06304 20 YEGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQG--YDLIFG---VGFGFMDAVEKVAKEYPDVKFAIIDGV 89 (260)
T ss_pred HHHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHcC--CCEEEE---CCcchhHHHHHHHHHCCCCEEEEecCc
Confidence 3566666777788876543 222 3444444444 886665 222112233333433447898888653
No 391
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=22.53 E-value=8.6e+02 Score=25.40 Aligned_cols=69 Identities=19% Similarity=0.282 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHcC-CCceEEEEecCCCCCCH-----------HHHHHHHhccCCCcEEE-EecCCC----HHHHHHHHh
Q 006044 64 SQAAVALDILRERK-GCFDVVLSDVHMPDMDG-----------FKLLEHIGLEMDLPVIM-MSADGR----VSAVMRGIR 126 (663)
Q Consensus 64 sng~eALelLre~k-~~pDLVILDI~MPdmDG-----------~ELL~~Ir~~~~IPVII-LSa~~d----~e~v~kAl~ 126 (663)
.+.++..+.++... ..+|.|=+++.-|...+ .++++.+++.-++||++ ++...+ .+.+..+.+
T Consensus 108 ~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 108 SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35555544443321 13788888887775322 24566666555788877 554433 233444556
Q ss_pred cCCCeE
Q 006044 127 HGACDY 132 (663)
Q Consensus 127 ~GA~dY 132 (663)
+||+..
T Consensus 188 ~Gad~i 193 (289)
T cd02810 188 AGADGL 193 (289)
T ss_pred cCCCEE
Confidence 676443
No 392
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=22.51 E-value=5.4e+02 Score=25.34 Aligned_cols=63 Identities=19% Similarity=0.168 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCCCeEEEECC------HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 44 TCLRILEQMLRRCLYNVTTCSQ------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 44 ~~re~L~~lL~~~gy~V~tasn------g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
.+.+.+++.+++.+|.+..+.. ..++++.+...+ +|-||+....+... +.+.+ ...+|+|++.
T Consensus 16 ~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--vdgiii~~~~~~~~---~~~~~--~~~ipvv~~~ 84 (267)
T cd06284 16 EILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQ--ADGIILLDGSLPPT---ALTAL--AKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcC--CCEEEEecCCCCHH---HHHHH--hcCCCEEEEe
Confidence 3456777778888898765443 223444555444 89777643222211 33333 2478999875
No 393
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=22.42 E-value=2.8e+02 Score=29.88 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=37.8
Q ss_pred HHHHHHHHh-ccCCCcEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Q 006044 94 GFKLLEHIG-LEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIW 146 (663)
Q Consensus 94 G~ELL~~Ir-~~~~IPVIILSa~~d------~e~v~kAl~~GA~dYLlKP~s~eeLk~~I 146 (663)
-+++++.+| ....+|+|+|+=++. .....++-+.|+++.|+--+..++-....
T Consensus 81 ~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~ 140 (265)
T COG0159 81 TLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELL 140 (265)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHH
Confidence 466777777 447899999986553 34466888999999999766666654333
No 394
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=22.40 E-value=2.6e+02 Score=26.46 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=38.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEec
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI 87 (663)
.+.+|.++.+.. ..+.+...... ...+..+.+..++++++...+ .|.+|.|.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~g~--~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLSGR--IDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhcCC--eeeeeccc
Confidence 456888888855 44445554433 567788999999999998765 99999985
No 395
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=22.26 E-value=4.7e+02 Score=26.01 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=33.6
Q ss_pred CceEEEEecCCCCC-------CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcC-CCeE
Q 006044 79 CFDVVLSDVHMPDM-------DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG-ACDY 132 (663)
Q Consensus 79 ~pDLVILDI~MPdm-------DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~G-A~dY 132 (663)
..|.+++|..-++. -++++++.+. ..+|+++.-+ -+.+.+.++++.+ +++.
T Consensus 120 ~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGG-I~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 120 EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGG-LTPDNVAEAIRLVRPYGV 178 (203)
T ss_pred cCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECC-CChHHHHHHHHhcCCCEE
Confidence 47889999865532 2456666664 4678776554 4677777888877 6544
No 396
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=22.23 E-value=5.2e+02 Score=27.52 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=57.1
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCC--C-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-c-C
Q 006044 35 RVLVVDDDITCLRILEQMLR----RCL--Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-E-M 105 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~----~~g--y-~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~-~ 105 (663)
.|||.|+|..+.-.+...+. ..+ . ...++.+.+++++.++. .+|.|.+|-.-| +-++++.. . .
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~---gaDyI~ld~~~~-----e~lk~~v~~~~~ 221 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEA---GADIIMLDNMKP-----EEIKEAVQLLKG 221 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCH-----HHHHHHHHHhcC
Confidence 47888887554432333222 223 2 33588999999988754 389999986444 34444321 1 2
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 106 DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+|+ +.++--+.+.+.+..+.|++.+-+
T Consensus 222 ~ipi-~AsGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 222 RVLL-EASGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred CCcE-EEECCCCHHHHHHHHHcCCCEEEe
Confidence 3665 456666788888899999987644
No 397
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.23 E-value=2e+02 Score=33.39 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=52.2
Q ss_pred CceEEEEe-cCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 79 CFDVVLSD-VHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 79 ~pDLVILD-I~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
.+-++|+| ++|-..+.++.+-++-+++...++++-+..+...+...+...+..|-.||++.+++...+++++.+
T Consensus 121 ~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~ 195 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI 195 (484)
T ss_pred CCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHH
Confidence 36677777 566555566654333244555566555555566777889999999999999999999999888764
No 398
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=22.22 E-value=4.9e+02 Score=29.87 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=48.5
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CH----HHHHHHHHHcCCCceEEEEecCCCCCCH--HHHHHH
Q 006044 33 GLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QA----AVALDILRERKGCFDVVLSDVHMPDMDG--FKLLEH 100 (663)
Q Consensus 33 giRVLIVDDD~~~r---e~L~~lL~~~gy~V~tas---ng----~eALelLre~k~~pDLVILDI~MPdmDG--~ELL~~ 100 (663)
+.+|+||+-|+.-. +.|+.+-+..+..+.... +. .++++.++.. .+|+||+|.- +... -+++++
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~--~~DvViIDTa--Gr~~~d~~lm~E 203 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE--NFDIIIVDTS--GRHKQEDSLFEE 203 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC--CCCEEEEECC--CCCcchHHHHHH
Confidence 56999998886322 222223333344444322 22 2455555543 4999999984 3221 234444
Q ss_pred Hh---c--cCCCcEEEEecCCC--HHHHHHHHh--cCCCeE-EeC
Q 006044 101 IG---L--EMDLPVIMMSADGR--VSAVMRGIR--HGACDY-LIK 135 (663)
Q Consensus 101 Ir---~--~~~IPVIILSa~~d--~e~v~kAl~--~GA~dY-LlK 135 (663)
+. . .++..+.++.+... .....++|. .+..+. |+|
T Consensus 204 l~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTK 248 (429)
T TIGR01425 204 MLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITK 248 (429)
T ss_pred HHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEEC
Confidence 42 1 23444555554322 233445663 355554 444
No 399
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.18 E-value=6.5e+02 Score=26.91 Aligned_cols=101 Identities=20% Similarity=0.331 Sum_probs=57.2
Q ss_pred cEEEEE--eCCHHHHHHHHHHHH--hCCCeEEEECCHHHHHHHH--HHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006044 34 LRVLVV--DDDITCLRILEQMLR--RCLYNVTTCSQAAVALDIL--RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (663)
Q Consensus 34 iRVLIV--DDD~~~re~L~~lL~--~~gy~V~tasng~eALelL--re~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~I 107 (663)
|||.|+ .+.+...+.+.++.+ ..+..+.......+.+... ......+|+||+ -+.||- +|+..+.. ..
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT-~L~a~~~~-~~ 74 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELLPPDWEIIYEMEAAKALGMDGLDIEEINADVIIT----IGGDGT-ILRTLQRA-KG 74 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHhcCCEEEEechhhhhcCcccCcccccCCCEEEE----EcCcHH-HHHHHHHc-CC
Confidence 466776 344555544444433 3466665443332222200 000113677776 367885 55555532 34
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
||+-+- .|-.+||. .++.+++...+++++++.+
T Consensus 75 PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~~ 107 (271)
T PRK01185 75 PILGIN-------------MGGLGFLT-EIEIDEVGSAIKKLIRGEY 107 (271)
T ss_pred CEEEEE-------------CCCCccCc-ccCHHHHHHHHHHHHcCCc
Confidence 877553 36678988 5889999999999887653
No 400
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=22.09 E-value=2.7e+02 Score=28.78 Aligned_cols=45 Identities=9% Similarity=0.133 Sum_probs=30.1
Q ss_pred CceEEEEecCCC-----CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHH
Q 006044 79 CFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (663)
Q Consensus 79 ~pDLVILDI~MP-----dmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~k 123 (663)
.+||||+|=-.. =.+--|++..|+..|.---||+|+........+
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie 171 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIE 171 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHH
Confidence 499999994221 234456777777777766777888776655544
No 401
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=22.07 E-value=8e+02 Score=26.34 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=55.6
Q ss_pred EeCCHHHHHHHHHHHHhCCCeEEE-E-----C---CHHHHHHHHHHcCCCceEEEEecCCCC-----CCHHHHHHHHhcc
Q 006044 39 VDDDITCLRILEQMLRRCLYNVTT-C-----S---QAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIGLE 104 (663)
Q Consensus 39 VDDD~~~re~L~~lL~~~gy~V~t-a-----s---ng~eALelLre~k~~pDLVILDI~MPd-----mDG~ELL~~Ir~~ 104 (663)
..+-....+.++.+-+..++.|.. . . +..+..+.+.+. ..|.|.+.-.... .--++.++.|++.
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA--GAQAVTLHGRTRAQGYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh--CCCEEEEEcccccccCCCchhHHHHHHHHHc
Confidence 344455556666655444444421 1 1 123444445443 3677766433221 1136778888777
Q ss_pred CCCcEEEEecCCCHHHHHHHH-hcCCCeEE
Q 006044 105 MDLPVIMMSADGRVSAVMRGI-RHGACDYL 133 (663)
Q Consensus 105 ~~IPVIILSa~~d~e~v~kAl-~~GA~dYL 133 (663)
.++|||..-.-.+.+.+.+++ ..||+...
T Consensus 191 ~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 191 VRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 789999988888999999999 46777653
No 402
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=22.07 E-value=1.4e+03 Score=27.38 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=57.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy--~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVII 111 (663)
++++||-|-+. ++.++.+.++.+. .|.......+.-+.+.. .|+.++=- .-+.-|..+++.+. ..+|||.
T Consensus 430 irLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~Laa----ADVfVlPS-~~EGfp~vlLEAMA--~GlPVVA 501 (578)
T PRK15490 430 TRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQK----MNVFILFS-RYEGLPNVLIEAQM--VGVPVIS 501 (578)
T ss_pred eEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHHh----CCEEEEcc-cccCccHHHHHHHH--hCCCEEE
Confidence 56666665442 3445555554432 34443333333333332 57666532 22444666777663 5778885
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHH
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq 147 (663)
.-... ..+.+..|..+|+.+|.+.+.+.+.+.
T Consensus 502 TdvGG----~~EiV~dG~nG~LVp~~D~~aLa~ai~ 533 (578)
T PRK15490 502 TPAGG----SAECFIEGVSGFILDDAQTVNLDQACR 533 (578)
T ss_pred eCCCC----cHHHcccCCcEEEECCCChhhHHHHHH
Confidence 43322 335566899999999998888776654
No 403
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=22.01 E-value=9.1e+02 Score=30.00 Aligned_cols=117 Identities=17% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC----CCe-EEEECCHHHHHHH----------------HHHcCCCceEEEEecCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRC----LYN-VTTCSQAAVALDI----------------LRERKGCFDVVLSDVHM 89 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~----gy~-V~tasng~eALel----------------Lre~k~~pDLVILDI~M 89 (663)
+...+|++.-.++..-+.+..+++.. +.+ +..|.++.|.++. ++ .+.+|++++|.+=
T Consensus 235 ~~~vnI~vhGHnp~l~~~iv~~~~~~el~~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~--TGavD~~VvD~QC 312 (781)
T PRK00941 235 KSKPVILVIGHNVAPGTYIIDYLEENGLTDKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIR--SGIPDVIVVDEQC 312 (781)
T ss_pred CCCcEEEEECCCchHHHHHHHHHhCcchhhCceEEEEecccchHhhhccCCcccCcHHHHHHHHH--cCCCcEEEEeccc
Confidence 45678999999999999998887632 444 3477777776522 22 2358999999973
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEe----------cCCCHHHHHHHHhcCC--CeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 90 PDMDGFKLLEHIGLEMDLPVIMMS----------ADGRVSAVMRGIRHGA--CDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 90 PdmDG~ELL~~Ir~~~~IPVIILS----------a~~d~e~v~kAl~~GA--~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
.--+-.++++. .+.++|-+| .+++.+.+.+.+..|- --+|+-|....|+.-.+...+.+.
T Consensus 313 i~p~L~eiA~~----ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~g~~i~~~~k~g~~a~~~a~~~~~~ 384 (781)
T PRK00941 313 VRTDILEEAKK----LGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIPGALILDPEKVGEVAVRVAKAVAPI 384 (781)
T ss_pred CcccHHHHHHH----hCCCEEEecccccccCCCCCccCHHHHHHHHHhCCCCeeEEecHHHHHHHHHHHHHHHhhh
Confidence 32233344443 445555444 3456677777766554 447888888888776665555443
No 404
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=21.89 E-value=6.6e+02 Score=26.25 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=30.8
Q ss_pred HHHHHHHhccC--CCcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 95 ~ELL~~Ir~~~--~IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
++.+++++... ++|||..-.-.+.+.+.+++..||+..
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 55677776544 899999998889999999999998753
No 405
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=21.84 E-value=4.8e+02 Score=26.50 Aligned_cols=65 Identities=14% Similarity=0.052 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhCCCeEEEECC--H---HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEec
Q 006044 45 CLRILEQMLRRCLYNVTTCSQ--A---AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA 114 (663)
Q Consensus 45 ~re~L~~lL~~~gy~V~tasn--g---~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa 114 (663)
+...+++.+++.+|.+..+.. . .+.++.+.... +|-||+-- +..+ -...+.++...++|+|++..
T Consensus 20 ~~~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~~--vdgiI~~~--~~~~-~~~~~~~~~~~~~PiV~i~~ 89 (265)
T cd06354 20 AWEGLERAAKELGIEYKYVESKSDADYEPNLEQLADAG--YDLIVGVG--FLLA-DALKEVAKQYPDQKFAIIDA 89 (265)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhCC--CCEEEEcC--cchH-HHHHHHHHHCCCCEEEEEec
Confidence 455667777778998776532 2 24455555544 89887731 1112 23334444445789988754
No 406
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=21.47 E-value=3.4e+02 Score=26.83 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=47.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCe---------------EEEECCHHHHHHHHHH--cCCCceEEEEec-CCCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYN---------------VTTCSQAAVALDILRE--RKGCFDVVLSDV-HMPDM 92 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~---------------V~tasng~eALelLre--~k~~pDLVILDI-~MPdm 92 (663)
-+++||||+.--....+.+.+.|+..... |+..+.+. ....+.+ ....||+||+|= |.-|-
T Consensus 31 ~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~~p~~~~~yd~II~DEcH~~Dp 109 (148)
T PF07652_consen 31 KRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLLNPCRLKNYDVIIMDECHFTDP 109 (148)
T ss_dssp HTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHHTSSCTTS-SEEEECTTT--SH
T ss_pred HccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhcCcccccCccEEEEeccccCCH
Confidence 36789999999999999999999865321 23333333 3333332 123599999995 33332
Q ss_pred CHHHHHHHH---hccCCCcEEEEecCC
Q 006044 93 DGFKLLEHI---GLEMDLPVIMMSADG 116 (663)
Q Consensus 93 DG~ELL~~I---r~~~~IPVIILSa~~ 116 (663)
.-+-+.-.| .......+|++||..
T Consensus 110 ~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 110 TSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 233332333 233456899999854
No 407
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=21.38 E-value=8e+02 Score=24.41 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=34.7
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 94 G~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|..+++.+. ..+|||. |.... ..+.+..|..+++..+-+.+++.+.+..++.
T Consensus 277 ~~~~~Ea~~--~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~ 328 (359)
T cd03808 277 PRVLLEAMA--MGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIE 328 (359)
T ss_pred chHHHHHHH--cCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHh
Confidence 445555542 4678776 32222 2344566778899999999999998888653
No 408
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=21.24 E-value=5.6e+02 Score=27.34 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=32.2
Q ss_pred HHHHHHHhccC--CCcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 95 FKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 95 ~ELL~~Ir~~~--~IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
++.+.++++.- ++|||...+-.+.+.+.+.+.+||+..
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V 278 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVV 278 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChh
Confidence 67777776544 899999999999999999999999864
No 409
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=21.23 E-value=8.7e+02 Score=25.64 Aligned_cols=113 Identities=20% Similarity=0.283 Sum_probs=74.6
Q ss_pred CccEEEEEeCCHHHHH--HHHHHHHhC---CC-eEEEECCHHHHHHHHHHcCCCceEEEEec-------CCCCCCHHHHH
Q 006044 32 AGLRVLVVDDDITCLR--ILEQMLRRC---LY-NVTTCSQAAVALDILRERKGCFDVVLSDV-------HMPDMDGFKLL 98 (663)
Q Consensus 32 ~giRVLIVDDD~~~re--~L~~lL~~~---gy-~V~tasng~eALelLre~k~~pDLVILDI-------~MPdmDG~ELL 98 (663)
.|..|+.+|-...-|- .+.+++... +. -...|++.+|++...+. .+|+|=+-+ .-|...-|+++
T Consensus 97 ~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~---G~D~IGTTLsGYT~~~~~~~~pDf~lv 173 (229)
T COG3010 97 AGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKL---GFDIIGTTLSGYTGYTEKPTEPDFQLV 173 (229)
T ss_pred CCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHc---CCcEEecccccccCCCCCCCCCcHHHH
Confidence 3567777775432221 344444433 22 23478999999987764 378774432 23344558999
Q ss_pred HHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC-C-CHHHHHHHHHH
Q 006044 99 EHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP-I-REEELKNIWQH 148 (663)
Q Consensus 99 ~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP-~-s~eeLk~~Iq~ 148 (663)
+.+.. .+++||.=-.++.++.+.++++.||+..++=- + +++++......
T Consensus 174 k~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~It~~F~~ 224 (229)
T COG3010 174 KQLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEEITQWFVD 224 (229)
T ss_pred HHHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHHHHHHHHH
Confidence 99865 78899998889999999999999999887654 2 45555544433
No 410
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=21.09 E-value=4e+02 Score=29.76 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=40.7
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCeEEEE---------CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006044 34 LRVLVVDDDITC----LRILEQMLRRCLYNVTTC---------SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (663)
Q Consensus 34 iRVLIVDDD~~~----re~L~~lL~~~gy~V~ta---------sng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~ 100 (663)
-++|||-|.... .+.+...|++.+..+..+ ....++++.+++.+ +|+||- +.+..-++..+.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~--~D~Iia---vGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESG--CDGVIA---FGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcC--cCEEEE---eCChHHHHHHHH
Confidence 478888775432 355777787766655444 23557777777765 999886 456566666665
Q ss_pred H
Q 006044 101 I 101 (663)
Q Consensus 101 I 101 (663)
+
T Consensus 125 i 125 (395)
T PRK15454 125 V 125 (395)
T ss_pred H
Confidence 4
No 411
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=21.06 E-value=8.3e+02 Score=26.05 Aligned_cols=69 Identities=19% Similarity=0.125 Sum_probs=46.1
Q ss_pred ECCHHHHHHHHHHcCCCceEEEEecCC-----CCCCHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 63 CSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 63 asng~eALelLre~k~~pDLVILDI~M-----PdmDG~ELL~~Ir~~--~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+.+.++|..+.+ . ..|.|.+.-+- .+...++++.++++. .++|||.--+-.+...+.+++.+||+....
T Consensus 180 v~s~~~a~~a~~-~--G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~i 255 (299)
T cd02809 180 ILTPEDALRAVD-A--GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLI 255 (299)
T ss_pred cCCHHHHHHHHH-C--CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 355555544443 2 37777765432 123456777777542 269999888888999999999999998644
No 412
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.05 E-value=4.9e+02 Score=25.83 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhCCCeEEEECC------HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEec
Q 006044 44 TCLRILEQMLRRCLYNVTTCSQ------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSA 114 (663)
Q Consensus 44 ~~re~L~~lL~~~gy~V~tasn------g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa 114 (663)
.+...++..+++.+|.+..... -.++++.+.... +|.||+.-..++ . ..++++. ..++|+|++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--~dgiii~~~~~~--~-~~~~~~~-~~~ipvV~i~~ 86 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARR--TDGVILVTPELT--S-AQRAALR-RTGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcC--CCEEEEecCCCC--h-HHHHHHh-cCCCCEEEEec
Confidence 4556677777788998765432 224556665544 897776543332 2 3455553 35789998854
No 413
>PLN02366 spermidine synthase
Probab=21.00 E-value=6.7e+02 Score=27.29 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=39.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRC-----LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~-----gy~V~-tasng~eALelLre~k~~pDLVILDI~MPd 91 (663)
|...+|.+||=|+.+.+..++.+... .-++. .+.++.+.++... ...+|+||+|..-|.
T Consensus 113 ~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~--~~~yDvIi~D~~dp~ 177 (308)
T PLN02366 113 SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAP--EGTYDAIIVDSSDPV 177 (308)
T ss_pred CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhcc--CCCCCEEEEcCCCCC
Confidence 44468999999998888888887542 12343 4556555554331 235999999986553
No 414
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=20.98 E-value=8.4e+02 Score=24.31 Aligned_cols=91 Identities=12% Similarity=0.098 Sum_probs=53.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEEE-E----C---CHHHHHHHHHHcCCCceEEEEecCC----C-CCCHHHHHHHHhccCC
Q 006044 40 DDDITCLRILEQMLRRCLYNVTT-C----S---QAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHIGLEMD 106 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~t-a----s---ng~eALelLre~k~~pDLVILDI~M----P-dmDG~ELL~~Ir~~~~ 106 (663)
.+-....+.++.+-+..+..+.. . . +..+.++.+.+. ..|.|.+.-.. + ..-.++.++++++..+
T Consensus 106 ~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~--Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ 183 (231)
T cd02801 106 KDPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDA--GASALTVHGRTREQRYSGPADWDYIAEIKEAVS 183 (231)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHh--CCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC
Confidence 34444556666555444432221 1 1 223333444443 36776554321 1 1234778888887788
Q ss_pred CcEEEEecCCCHHHHHHHHhc-CCCeE
Q 006044 107 LPVIMMSADGRVSAVMRGIRH-GACDY 132 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~-GA~dY 132 (663)
+|||.--.-.+.+.+.++++. ||+..
T Consensus 184 ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 184 IPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred CeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 999987777788899999988 66653
No 415
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.95 E-value=6.6e+02 Score=26.71 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=32.2
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 93 DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 93 DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
..+++++.+++..++||+..-...+.+.+.++++.|..|++
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 35678888887778999888777788999999999655543
No 416
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=20.91 E-value=8.4e+02 Score=24.78 Aligned_cols=74 Identities=19% Similarity=0.268 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHH
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKN 144 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~ 144 (663)
+..+..+.+.. .|++++-....+.-|+.+++.+. ..+|||.--... ..+.+..|..+|+..+ .++|.+
T Consensus 233 ~~~~~~~~~~~----~d~~v~ps~~~E~~~~~~lEAma--~G~PvI~~~~~~----~~e~i~~~~~g~l~~~--~~~l~~ 300 (335)
T cd03802 233 GGAEKAELLGN----ARALLFPILWEEPFGLVMIEAMA--CGTPVIAFRRGA----VPEVVEDGVTGFLVDS--VEELAA 300 (335)
T ss_pred CHHHHHHHHHh----CcEEEeCCcccCCcchHHHHHHh--cCCCEEEeCCCC----chhheeCCCcEEEeCC--HHHHHH
Confidence 34444555543 57777755444556777777764 457888543222 3345667888999988 888888
Q ss_pred HHHHHH
Q 006044 145 IWQHVV 150 (663)
Q Consensus 145 ~Iq~VL 150 (663)
++..+.
T Consensus 301 ~l~~l~ 306 (335)
T cd03802 301 AVARAD 306 (335)
T ss_pred HHHHHh
Confidence 887763
No 417
>PLN02316 synthase/transferase
Probab=20.90 E-value=1.1e+03 Score=30.38 Aligned_cols=113 Identities=9% Similarity=0.085 Sum_probs=61.7
Q ss_pred ccEEEEEeC--CHHHHHHHHHHHHhCC--C--eEEEECCHHHHHH-HHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 006044 33 GLRVLVVDD--DITCLRILEQMLRRCL--Y--NVTTCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (663)
Q Consensus 33 giRVLIVDD--D~~~re~L~~lL~~~g--y--~V~tasng~eALe-lLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~ 105 (663)
..+++|+-+ ++.....++.+....+ + .|..+....+.+. .+-. ..|++++=- +-+.=|+-.++.++ .
T Consensus 869 ~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iya---aADiflmPS-~~EP~GLvqLEAMa--~ 942 (1036)
T PLN02316 869 NGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYA---GADFILVPS-IFEPCGLTQLTAMR--Y 942 (1036)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHH---hCcEEEeCC-cccCccHHHHHHHH--c
Confidence 456677764 3334455555555331 1 3332222233332 2221 157777642 33445666676664 4
Q ss_pred CCcEEEEecCCCHHHHHHH---------HhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 106 DLPVIMMSADGRVSAVMRG---------IRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v~kA---------l~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
..|+|+-..-.-.+.+... ...+..+|+..|.+.+.|..+|.+++.
T Consensus 943 GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~ 997 (1036)
T PLN02316 943 GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAIS 997 (1036)
T ss_pred CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHHh
Confidence 5566654333444444332 012478999999999999999988875
No 418
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=20.82 E-value=9.9e+02 Score=27.42 Aligned_cols=84 Identities=20% Similarity=0.181 Sum_probs=42.6
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEE---CCHHHHH-HHHHHcCCCceEEEEecCCCCCCH--HHHHHHHh-
Q 006044 33 GLRVLVVDDDIT---CLRILEQMLRRCLYNVTTC---SQAAVAL-DILRERKGCFDVVLSDVHMPDMDG--FKLLEHIG- 102 (663)
Q Consensus 33 giRVLIVDDD~~---~re~L~~lL~~~gy~V~ta---sng~eAL-elLre~k~~pDLVILDI~MPdmDG--~ELL~~Ir- 102 (663)
+.+|++|+.|.. ..+.++.+....+..+... .+..+.+ +.++... ..|+||+|.- +... -+++++++
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTA--Gr~~~d~~lm~El~~ 199 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTA--GRHALEEDLIEEMKE 199 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECC--CcccchHHHHHHHHH
Confidence 578999988853 2334555555555555433 2333322 3333322 3699999984 2221 22333332
Q ss_pred ----ccCCCcEEEEecCCCHH
Q 006044 103 ----LEMDLPVIMMSADGRVS 119 (663)
Q Consensus 103 ----~~~~IPVIILSa~~d~e 119 (663)
..++..++++.+....+
T Consensus 200 l~~~~~pdevlLVvda~~gq~ 220 (437)
T PRK00771 200 IKEAVKPDEVLLVIDATIGQQ 220 (437)
T ss_pred HHHHhcccceeEEEeccccHH
Confidence 23455566666544433
No 419
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=20.82 E-value=4.7e+02 Score=29.08 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=40.4
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCeEEEEC---------CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006044 34 LRVLVVDDDIT----CLRILEQMLRRCLYNVTTCS---------QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (663)
Q Consensus 34 iRVLIVDDD~~----~re~L~~lL~~~gy~V~tas---------ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~ 100 (663)
-|||||-|... ..+.+...|+..++.+..+. ...++++.+++.+ +|+||- +.+..-+++.+.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~--~D~IIa---iGGGS~iD~AK~ 96 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFK--PDTIIA---LGGGSPMDAAKI 96 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcC--CCEEEE---eCCccHHHHHHH
Confidence 58999987543 34457777877776665443 4557777777655 898884 345555555554
Q ss_pred H
Q 006044 101 I 101 (663)
Q Consensus 101 I 101 (663)
+
T Consensus 97 i 97 (398)
T cd08178 97 M 97 (398)
T ss_pred H
Confidence 4
No 420
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.70 E-value=2.5e+02 Score=28.30 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=19.4
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006044 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (663)
Q Consensus 80 pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~ 115 (663)
|||||........ +..+.+++...+|++.+...
T Consensus 75 PDLIi~~~~~~~~---~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 75 PDVVIDVGSDDPT---SIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCEEEEecCCccc---hhHHHHHHhhCCCEEEEecC
Confidence 9999986543221 23444443356788877643
No 421
>PRK01581 speE spermidine synthase; Validated
Probab=20.66 E-value=5.8e+02 Score=28.85 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=36.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHH--HH---hC---CCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQM--LR---RC---LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~l--L~---~~---gy~V~-tasng~eALelLre~k~~pDLVILDI~MP 90 (663)
+...+|.+||=|+...+..+.. |. +. .-++. .+.++.+.+.. ....||+||+|+--|
T Consensus 172 ~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~---~~~~YDVIIvDl~DP 237 (374)
T PRK01581 172 ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS---PSSLYDVIIIDFPDP 237 (374)
T ss_pred CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh---cCCCccEEEEcCCCc
Confidence 4445899999999988887752 21 11 22443 45666665543 334599999997433
No 422
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.58 E-value=5.4e+02 Score=29.43 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=62.3
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCC----HHHHH---HHHh
Q 006044 34 LRVLVV----DDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD----GFKLL---EHIG 102 (663)
Q Consensus 34 iRVLIV----DDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmD----G~ELL---~~Ir 102 (663)
.+|.|+ --+..--+.|...|...||.++. .....|+||+...-.-.+ -...+ ++++
T Consensus 24 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~-------------~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k 90 (467)
T PRK14329 24 KKLFIESYGCQMNFADSEIVASILQMAGYNTTE-------------NLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALK 90 (467)
T ss_pred CEEEEEecCCCCcHHHHHHHHHHHHHCcCEECC-------------CcccCCEEEEeCcceechHHHHHHHHHHHHHHHH
Confidence 345554 45666678888999888998653 112379999987654322 23333 3343
Q ss_pred c-cCCCcEEEEecCCCHHHHHHHHhc-CCCeEEeCCCCHHHHHHHHHHHH
Q 006044 103 L-EMDLPVIMMSADGRVSAVMRGIRH-GACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 103 ~-~~~IPVIILSa~~d~e~v~kAl~~-GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
+ .++.+| ++++..-...-.+.++. +..||++-+-..+.+.++++.+.
T Consensus 91 ~~~p~~~i-vvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~ 139 (467)
T PRK14329 91 KKNPKLIV-GVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVE 139 (467)
T ss_pred hhCCCcEE-EEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHHh
Confidence 3 345544 44443322222334444 44899999999999888887754
No 423
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=20.53 E-value=3.4e+02 Score=30.98 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=39.8
Q ss_pred CceEEEEecCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 79 CFDVVLSDVHMPD-MDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 79 ~pDLVILDI~MPd-mDG~ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
.+|+|.+|..-.. ...++.+++|+.. +++|||+ -.-...+.+..++++||+..
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEE
Confidence 3899999984432 3567788888765 6888887 34456788889999999876
No 424
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=20.50 E-value=6.9e+02 Score=24.56 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCCCeEEEECC---HH---HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCH
Q 006044 45 CLRILEQMLRRCLYNVTTCSQ---AA---VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRV 118 (663)
Q Consensus 45 ~re~L~~lL~~~gy~V~tasn---g~---eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~ 118 (663)
....+++.+++.+|.+..+.. .. ++++.+.... +|.||+....+. ..+.++.++ ...+|+|++.....
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiii~~~~~~--~~~~~~~~~-~~~ipvV~~~~~~~- 90 (266)
T cd06282 17 CVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQR--VDGLILTVADAA--TSPALDLLD-AERVPYVLAYNDPQ- 90 (266)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcC--CCEEEEecCCCC--chHHHHHHh-hCCCCEEEEeccCC-
Confidence 445666777777898776532 23 3444444433 898887543332 234555554 35789888754322
Q ss_pred HHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 119 SAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 119 e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.+ .+|+. .-.......+.+++++
T Consensus 91 --------~~-~~~v~-~d~~~~g~~~~~~l~~ 113 (266)
T cd06282 91 --------PG-RPSVS-VDNRAAARDVAQALAA 113 (266)
T ss_pred --------CC-CCEEe-eCcHHHHHHHHHHHHH
Confidence 11 23543 3344455555555554
No 425
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=20.49 E-value=5.6e+02 Score=24.36 Aligned_cols=53 Identities=26% Similarity=0.247 Sum_probs=27.7
Q ss_pred ccEEEEEeCCHHHH---HHHHHHHHhCCCeEEEEC---CHHHHH----HHHHHcCCCceEEEEec
Q 006044 33 GLRVLVVDDDITCL---RILEQMLRRCLYNVTTCS---QAAVAL----DILRERKGCFDVVLSDV 87 (663)
Q Consensus 33 giRVLIVDDD~~~r---e~L~~lL~~~gy~V~tas---ng~eAL----elLre~k~~pDLVILDI 87 (663)
+.+|++||-|..-. +.+..+....+..+.... +..+.+ ..+.. ..+|+||+|.
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~viiDt 90 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE--ENFDVVIVDT 90 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 57899999875322 223333333344444332 333322 22223 3489999987
No 426
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=20.46 E-value=2.4e+02 Score=29.11 Aligned_cols=64 Identities=23% Similarity=0.213 Sum_probs=37.3
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCce--EEEEecCCCCCCHHHHHHHHhccCCC
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFD--VVLSDVHMPDMDGFKLLEHIGLEMDL 107 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pD--LVILDI~MPdmDG~ELL~~Ir~~~~I 107 (663)
++.|-||+||||-. ++-.+..+|++.+++....+. ++++|.. +-.+.......+
T Consensus 109 ~~~G~kVvvVEDVi-----------------TTG~Si~eai~~l~~~G~~V~gv~~ivDR~-------~~~~~~~~~~g~ 164 (201)
T COG0461 109 EVKGEKVVVVEDVI-----------------TTGGSILEAVEALREAGAEVVGVAVIVDRQ-------SGAKEVLKEYGV 164 (201)
T ss_pred CCCCCEEEEEEecc-----------------cCCHhHHHHHHHHHHcCCeEEEEEEEEecc-------hhHHHHHHhcCC
Confidence 45788999999943 344456667777776543232 5677765 223333334566
Q ss_pred cEEEEecCCC
Q 006044 108 PVIMMSADGR 117 (663)
Q Consensus 108 PVIILSa~~d 117 (663)
|++-+...++
T Consensus 165 ~~~sl~tl~d 174 (201)
T COG0461 165 KLVSLVTLSD 174 (201)
T ss_pred ceEEEeeHHH
Confidence 7666555433
No 427
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=20.36 E-value=5.1e+02 Score=29.78 Aligned_cols=65 Identities=18% Similarity=0.240 Sum_probs=44.4
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCC-----C--CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCC
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMP-----D--MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGAC 130 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MP-----d--mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~ 130 (663)
.|.+.+++...... .+|.|.+---.| + .-|++.++++....++||+.+-+- +.+.+.+.++.|++
T Consensus 396 S~h~~~e~~~a~~~---gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~~~~~G~~ 467 (502)
T PLN02898 396 SCKTPEQAEQAWKD---GADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGI-SASNAASVMESGAP 467 (502)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHHHHHcCCC
Confidence 56677666555432 378886433222 1 127888988876778999988554 57778889999988
No 428
>PRK03612 spermidine synthase; Provisional
Probab=20.28 E-value=5.4e+02 Score=29.93 Aligned_cols=58 Identities=28% Similarity=0.241 Sum_probs=37.4
Q ss_pred CCccEEEEEeCCHHHHHHHHH--HHHhC------CCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQ--MLRRC------LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPD 91 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~--lL~~~------gy~V~-tasng~eALelLre~k~~pDLVILDI~MPd 91 (663)
+..-+|.+||=|+...+..++ .+... .-++. ...|+.+.++ .....||+||+|..-|.
T Consensus 319 ~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~---~~~~~fDvIi~D~~~~~ 385 (521)
T PRK03612 319 PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLR---KLAEKFDVIIVDLPDPS 385 (521)
T ss_pred CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHH---hCCCCCCEEEEeCCCCC
Confidence 333589999999999998887 44321 12343 4556655443 33346999999975554
No 429
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=20.20 E-value=9.4e+02 Score=24.58 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=62.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEE--CCHHHHHHHHHHcCCCceEEEEecC-CCCCCHHHHHHHHhccCCC
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTC--SQAAVALDILRERKGCFDVVLSDVH-MPDMDGFKLLEHIGLEMDL 107 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~g--y~V~ta--sng~eALelLre~k~~pDLVILDI~-MPdmDG~ELL~~Ir~~~~I 107 (663)
.++++|+.+-+. ...+.+++++.+ -.|... -+..+..+.+.. .|++++-.. ..+.-|+.+++.+. ..+
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~----ad~~i~ps~~~~e~~g~~~~Ea~~--~g~ 290 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLAA----CDVFVFPSVERSEAFGIVLLEAMA--FGK 290 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHh----CCEEEeCCcccccccchHHHHHHH--cCC
Confidence 466777766543 334555554332 234332 233444445443 477665322 12344667777764 467
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|||.--.....+.+.. .|..+++..+-+.+++.+++..++.
T Consensus 291 Pvi~~~~~~~~~~i~~---~~~~g~~~~~~d~~~~~~~i~~l~~ 331 (357)
T cd03795 291 PVISTEIGTGGSYVNL---HGVTGLVVPPGDPAALAEAIRRLLE 331 (357)
T ss_pred CEEecCCCCchhHHhh---CCCceEEeCCCCHHHHHHHHHHHHH
Confidence 8886322222222222 4788999999999999999998875
No 430
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=20.16 E-value=3.7e+02 Score=24.08 Aligned_cols=87 Identities=15% Similarity=0.049 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCC--CHHHHHHHHhccCCCcEEEEecCCCHHH
Q 006044 43 ITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDM--DGFKLLEHIGLEMDLPVIMMSADGRVSA 120 (663)
Q Consensus 43 ~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdm--DG~ELL~~Ir~~~~IPVIILSa~~d~e~ 120 (663)
....+.++..|...+..+....+.......+... .+-|++|+ +..++. +-.++++..++ .+++||.+|...+...
T Consensus 12 ~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~d~vi~-iS~sG~t~~~~~~~~~a~~-~g~~vi~iT~~~~s~l 88 (128)
T cd05014 12 GHIARKIAATLSSTGTPAFFLHPTEALHGDLGMV-TPGDVVIA-ISNSGETDELLNLLPHLKR-RGAPIIAITGNPNSTL 88 (128)
T ss_pred HHHHHHHHHHhhcCCCceEEcccchhhccccCcC-CCCCEEEE-EeCCCCCHHHHHHHHHHHH-CCCeEEEEeCCCCCch
Confidence 3445566666776777776655443222222211 12366554 334432 34555555543 4799999999877655
Q ss_pred HHHHHhcCCCeEEeCCC
Q 006044 121 VMRGIRHGACDYLIKPI 137 (663)
Q Consensus 121 v~kAl~~GA~dYLlKP~ 137 (663)
.. .|+..|.-|.
T Consensus 89 a~-----~ad~~l~~~~ 100 (128)
T cd05014 89 AK-----LSDVVLDLPV 100 (128)
T ss_pred hh-----hCCEEEECCC
Confidence 43 3555565554
No 431
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=20.09 E-value=3.4e+02 Score=29.52 Aligned_cols=40 Identities=18% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 95 ~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+++++|++..++||++.....+.+.+.++++.|.+|++.
T Consensus 281 ~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 320 (338)
T cd04733 281 LEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIG 320 (338)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 4677788877789999988888899999999999888753
No 432
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=20.01 E-value=5.6e+02 Score=27.32 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHhC-CCeEE------EECCHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCcEEEE
Q 006044 41 DDITCLRILEQMLRRC-LYNVT------TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVIMM 112 (663)
Q Consensus 41 DD~~~re~L~~lL~~~-gy~V~------tasng~eALelLre~k~~pDLVILDI~MPd-mDG~ELL~~Ir~~~~IPVIIL 112 (663)
|..+.++.++.++... +..++ .+.+..+|++.+.+.. +|=||+-=.-+. .+|++.|+++.+...-.+||.
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG--~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~ 175 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLG--VARILTSGQQQDAEQGLSLIMELIAASDGPIIMA 175 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcC--CCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 4467777888888765 34443 4578899999888764 888888755553 579999998854333244666
Q ss_pred ecCCCHHHHHHHHhcCCCeEE
Q 006044 113 SADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYL 133 (663)
-+--..+.+.+....|+..|-
T Consensus 176 GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 176 GAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEe
Confidence 555566666666678887765
Done!